Citrus Sinensis ID: 022369
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 298 | 2.2.26 [Sep-21-2011] | |||||||
| Q8N5I4 | 330 | Dehydrogenase/reductase S | yes | no | 0.832 | 0.751 | 0.358 | 3e-29 | |
| Q91WL8 | 414 | WW domain-containing oxid | yes | no | 0.637 | 0.458 | 0.407 | 3e-29 | |
| Q9NZC7 | 414 | WW domain-containing oxid | no | no | 0.664 | 0.478 | 0.386 | 3e-29 | |
| Q5R9W5 | 414 | WW domain-containing oxid | yes | no | 0.664 | 0.478 | 0.376 | 2e-28 | |
| Q5F389 | 414 | WW domain-containing oxid | yes | no | 0.674 | 0.485 | 0.378 | 2e-28 | |
| Q6RVV4 | 316 | Short-chain dehydrogenase | N/A | no | 0.677 | 0.639 | 0.380 | 3e-28 | |
| Q8TC12 | 318 | Retinol dehydrogenase 11 | no | no | 0.734 | 0.688 | 0.356 | 9e-27 | |
| A2RVM0 | 322 | Short-chain dehydrogenase | no | no | 0.751 | 0.695 | 0.345 | 4e-26 | |
| Q9QYF1 | 316 | Retinol dehydrogenase 11 | no | no | 0.805 | 0.759 | 0.341 | 5e-26 | |
| Q8NBN7 | 331 | Retinol dehydrogenase 13 | no | no | 0.671 | 0.604 | 0.358 | 1e-24 |
| >sp|Q8N5I4|DHRSX_HUMAN Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 147/265 (55%), Gaps = 17/265 (6%)
Query: 40 VIYEMLFQRILASHLQNPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99
VI L +R L+ P+ PP D IVTG T GIG A+ LA G HV++A N
Sbjct: 20 VILAQLLRRCRGGFLE-PV-FPPRPDRVAIVTGGTDGIGYSTAKHLARLGMHVIIAGNND 77
Query: 100 KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIF 159
A +++ K +EE L +E + DL S+ S+ +F + + + PLHVLINNAG+
Sbjct: 78 SKAKQVVSKIKEE----TLNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVLINNAGVM 133
Query: 160 SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR-GSP---SRIINVNSVMHYVGFV 215
+ PQ+ ++DG+EEH +N+L LL+ LL +L GSP +R++ V+S HYV +
Sbjct: 134 MV--PQRKTRDGFEEHFGLNYLGHFLLTNLLLDTLKESGSPGHSARVVTVSSATHYVAEL 191
Query: 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAE-SGINVVCVSPGIVSTNVA 274
+ +D+ + Y+ Y+ SKLA + F+ LQ+ L AE S + V PG+V+T+V
Sbjct: 192 NMDDLQSSAC---YSPHAAYAQSKLALVLFTYHLQRLLAAEGSHVTANVVDPGVVNTDVY 248
Query: 275 RDLPKIVQAAYHLIPYFIF-NPQEG 298
+ + + A L+ + +F P EG
Sbjct: 249 KHVFWATRLAKKLLGWLLFKTPDEG 273
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Homo sapiens (taxid: 9606) EC: 1EC: .EC: 1EC: .EC: -EC: .EC: - |
| >sp|Q91WL8|WWOX_MOUSE WW domain-containing oxidoreductase OS=Mus musculus GN=Wwox PE=1 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 113/206 (54%), Gaps = 16/206 (7%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+ SGIG E A+ A GAHV++A RNL A+E + + EEW +EAM LD
Sbjct: 128 LVTGANSGIGFETAKSFALHGAHVILACRNLSRASEAVSRILEEWH----KAKVEAMTLD 183
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
L L SV F+EA+ + LHVL+ NAG F++ P +KDG E QVNHL L
Sbjct: 184 LAVLRSVQHFAEAFKAKNVSLHVLVCNAGTFAL--PWGLTKDGLETTFQVNHLGHFYLVQ 241
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN-------VVSGRRKYTSLMGYSGSKLA 241
LL L R SP+R+I V+S H F D D + + R Y +++ Y+ SKL
Sbjct: 242 LLQDVLCRSSPARVIVVSSESHR--FTDINDSSGKLDLSRLSPPRSDYWAMLAYNRSKLC 299
Query: 242 QIKFSSILQKRLPAESGINVVCVSPG 267
I FS+ L +RL + G+ V PG
Sbjct: 300 NILFSNELHRRL-SPRGVTSNAVHPG 324
|
Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm (By similarity). May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9NZC7|WWOX_HUMAN WW domain-containing oxidoreductase OS=Homo sapiens GN=WWOX PE=1 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (323), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 83/215 (38%), Positives = 118/215 (54%), Gaps = 17/215 (7%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+ SGIG E A+ A GAHV++A RN+ A+E + + EEW +EAM LD
Sbjct: 128 VVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWH----KAKVEAMTLD 183
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
L L SV F+EA+ + PLHVL+ NA F++ P +KDG E QVNHL L
Sbjct: 184 LALLRSVQHFAEAFKAKNVPLHVLVCNAATFAL--PWSLTKDGLETTFQVNHLGHFYLVQ 241
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTED-------MNVVSGRRKYTSLMGYSGSKLA 241
LL L R +P+R+I V+S H F D D + + Y +++ Y+ SKL
Sbjct: 242 LLQDVLCRSAPARVIVVSSESHR--FTDINDSLGKLDFSRLSPTKNDYWAMLAYNRSKLC 299
Query: 242 QIKFSSILQKRLPAESGINVVCVSPG-IVSTNVAR 275
I FS+ L +RL + G+ V PG ++ +N+ R
Sbjct: 300 NILFSNELHRRL-SPRGVTSNAVHPGNMMYSNIHR 333
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Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. Required for normal bone development (By similarity). May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5R9W5|WWOX_PONAB WW domain-containing oxidoreductase OS=Pongo abelii GN=WWOX PE=2 SV=1 | Back alignment and function description |
|---|
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 118/215 (54%), Gaps = 17/215 (7%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+ SGIG E A+ A GAHV++A RN+ A+E + + EEW +EA+ LD
Sbjct: 128 VVTGANSGIGFETAKSFALHGAHVILACRNMARASEAVSRILEEWH----KAKVEAVTLD 183
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
L L SV F+EA+ + PLHVL+ NA F++ P +KDG E QVNHL L
Sbjct: 184 LALLRSVQHFAEAFKAKNVPLHVLVCNAATFAL--PWSLTKDGLETTFQVNHLGHFYLVQ 241
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTED-------MNVVSGRRKYTSLMGYSGSKLA 241
LL L R +P+R+I V+S H F D D + + Y +++ Y+ SKL
Sbjct: 242 LLQDVLCRSAPARVIVVSSESHR--FTDINDSLGKLDFSRLSPTKNDYWAMLAYNRSKLC 299
Query: 242 QIKFSSILQKRLPAESGINVVCVSPG-IVSTNVAR 275
+ FS+ L +RL + G+ V PG ++ +N+ R
Sbjct: 300 NVLFSNELHRRL-SPRGVTSNAVHPGNMMYSNIHR 333
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Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development. Inhibits Wnt signaling, probably by sequestering DVL2 in the cytoplasm. Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q5F389|WWOX_CHICK WW domain-containing oxidoreductase OS=Gallus gallus GN=WWOX PE=2 SV=2 | Back alignment and function description |
|---|
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 125/214 (58%), Gaps = 13/214 (6%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
I+TG+ SGIG E A+ A GA+V++A RN+ N+ +Q+ EEW +EAM LD
Sbjct: 128 IITGANSGIGFETAKSFALHGAYVILACRNMSRGNDAVQRILEEWH----KAKVEAMTLD 183
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
L SL SV F+EA+ + PLH+L+ NA IF G ++DG E QVNHL L
Sbjct: 184 LASLRSVQNFAEAFKSKNMPLHILVCNAAIF--GSSWCLTEDGLESTFQVNHLGHFYLVQ 241
Query: 189 LLFPSLIRGSPSRIINVNSVMH-YVGFVDTE---DMNVVS-GRRKYTSLMGYSGSKLAQI 243
LL L R SP+R++ V+S H + D+ D +++S +++Y +++ Y+ SKL I
Sbjct: 242 LLEDILRRSSPARVVVVSSESHRFTEIKDSSGKLDFSLLSPSKKEYWAMLAYNRSKLCNI 301
Query: 244 KFSSILQKRLPAESGINVVCVSPG-IVSTNVARD 276
FS+ L +RL + G+ V PG ++ +++ R+
Sbjct: 302 LFSNELNRRL-SPHGVTSNSVHPGNMIYSSIHRN 334
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Putative oxidoreductase. Acts as a tumor suppressor and plays a role in apoptosis. May function synergistically with p53/TP53 to control genotoxic stress-induced cell death. Plays a role in TGFB1 signaling and TGFB1-mediated cell death. May also play a role in tumor necrosis factor (TNF)-mediated cell death. Required for normal bone development. Inhibits Wnt signaling. Gallus gallus (taxid: 9031) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q6RVV4|TIC32_PEA Short-chain dehydrogenase TIC 32, chloroplastic OS=Pisum sativum GN=TIC32 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 122/218 (55%), Gaps = 16/218 (7%)
Query: 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLP-LNIEA 124
LT IVTG++SGIG E R LA GAHV+M VRN+ AA ++ ++ K +P ++A
Sbjct: 31 LTAIVTGASSGIGAETTRVLALRGAHVIMGVRNMVAAKDV-----KDTILKDIPSAKVDA 85
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPA 184
+ELDL SLDSV +F+ +N PL++LINNAGI + P K SKD E NH+
Sbjct: 86 IELDLSSLDSVKKFASEFNSSGRPLNILINNAGIMAC--PFKLSKDNIELQFATNHIGHF 143
Query: 185 LLSILLFPSLIRGS-----PSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
LL+ LL ++ + + RI+NV S H + + + ++ + Y + Y SK
Sbjct: 144 LLTNLLLDTMKKTTRESKKEGRIVNVASEAHRFAYPEGIRFDKINDQSSYNNWRAYGQSK 203
Query: 240 LAQIKFSSILQKRLPAESGINVVCVS--PGIVSTNVAR 275
LA + ++ L K L E G+N+ S PG + TN+ R
Sbjct: 204 LANVLHANQLTKHLK-EDGVNITANSLHPGTIVTNLFR 240
|
Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62. Has a NADPH-dependent dehydrogenase activity, but only after preincubation with lipids. Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q8TC12|RDH11_HUMAN Retinol dehydrogenase 11 OS=Homo sapiens GN=RDH11 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 120 bits (302), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 128/230 (55%), Gaps = 11/230 (4%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+ +GIG+E A++LA+ GA V +A R+++ EL+ K + +G L +LD
Sbjct: 45 VVTGANTGIGKETAKELAQRGARVYLACRDVEKG-ELVAKEIQTTTGNQQVL---VRKLD 100
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
L S+ F++ + LHVLINNAG+ P + DG+E H+ VNHL LL+
Sbjct: 101 LSDTKSIRAFAKGFLAEEKHLHVLINNAGVMMC--PYSKTADGFEMHIGVNHLGHFLLTH 158
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
LL L +PSRI+NV+S+ H++G + ++ G + Y + + Y SKLA I F+
Sbjct: 159 LLLEKLKESAPSRIVNVSSLAHHLGRIHFHNLQ---GEKFYNAGLAYCHSKLANILFTQE 215
Query: 249 LQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
L +RL SG+ V PG V + + R ++ + L +FI PQ+G
Sbjct: 216 LARRLKG-SGVTTYSVHPGTVQSELVRH-SSFMRWMWWLFSFFIKTPQQG 263
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Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent retinal reductase. Displays high activity towards 9-cis and all-trans-retinol. Also involved in the metabolism of short-chain aldehydes. No steroid dehydrogenase activity detected. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 0 EC: 0 |
| >sp|A2RVM0|TIC32_ARATH Short-chain dehydrogenase TIC 32, chloroplastic OS=Arabidopsis thaliana GN=TIC32 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 125/240 (52%), Gaps = 16/240 (6%)
Query: 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
LT IVTG++SGIG E AR L+ G HVVMAVRN + ++ + ++ G L + M
Sbjct: 30 LTAIVTGASSGIGVETARVLSLRGVHVVMAVRNTDSGAKVKEDIVKQVPGAKL----DVM 85
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
ELDL S+ SV +F+ + PL++LINNAGI + P SKD E NHL L
Sbjct: 86 ELDLSSMQSVRKFASEYKSTGLPLNLLINNAGIMAC--PFMLSKDNIELQFATNHLGHFL 143
Query: 186 LSILLFPSLIRGS-----PSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
L+ LL ++ S RI+N++S H + + + ++ + Y+S+ Y SKL
Sbjct: 144 LTKLLLDTMKSTSRESKREGRIVNLSSEAHRFSYPEGVRFDKINDKSSYSSMRAYGQSKL 203
Query: 241 AQIKFSSILQKRLPAESGINVVCVS--PGIVSTNVARDLPKIVQAAYHLIPYFIFN--PQ 296
+ ++ L K+L E G+N+ S PG + TN+ R + A + +I PQ
Sbjct: 204 CNVLHANELTKQLK-EDGVNITANSLHPGAIMTNLGRYFNPYLAVAVGAVAKYILKSVPQ 262
|
Involved in protein precursor import into chloroplasts. Part of the redox regulon consisting of TIC32, TIC 55 and TIC62. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9QYF1|RDH11_MOUSE Retinol dehydrogenase 11 OS=Mus musculus GN=Rdh11 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 137/258 (53%), Gaps = 18/258 (6%)
Query: 41 IYEMLFQRILASHLQNPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK 100
I +ML + S++Q P + IVTG+ +GIG+E A+ LA+ GA V +A R++
Sbjct: 21 IRKMLSSGVCTSNVQLPGKVA-------IVTGANTGIGKETAKDLAQRGARVYLACRDVD 73
Query: 101 AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFS 160
EL + + +G + +LDL S+ F++ + LH+LINNAG+
Sbjct: 74 KG-ELAAREIQAVTGNS---QVFVRKLDLADTKSIRAFAKDFLAEEKHLHLLINNAGVMM 129
Query: 161 IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220
P + DG+E H+ VNHL LL+ LL L +PSRI+N++S+ H++G + ++
Sbjct: 130 C--PYSKTADGFEMHIGVNHLGHFLLTHLLLEKLKESAPSRIVNLSSLGHHLGRIHFHNL 187
Query: 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI 280
G + Y++ + Y SKLA I F+ L KRL SG+ V PG V + + R I
Sbjct: 188 Q---GEKFYSAGLAYCHSKLANILFTKELAKRLKG-SGVTTYSVHPGTVHSELTR-YSSI 242
Query: 281 VQAAYHLIPYFIFNPQEG 298
++ + L FI PQEG
Sbjct: 243 MRWLWQLFFVFIKTPQEG 260
|
Exhibits an oxidoreductive catalytic activity towards retinoids. Most efficient as an NADPH-dependent all-trans-retinal reductase. Also involved in the metabolism of short-chain aldehydes. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 0 EC: 0 |
| >sp|Q8NBN7|RDH13_HUMAN Retinol dehydrogenase 13 OS=Homo sapiens GN=RDH13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 117/209 (55%), Gaps = 9/209 (4%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T IVTG+ +GIG++ A +LA G ++++A R++ E + ++ G+ L ++ A
Sbjct: 40 TVIVTGANTGIGKQTALELARRGGNIILACRDM----EKCEAAAKDIRGETLNHHVNARH 95
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LDL SL S+ F+ + +LINNAG+ P ++DG+E VNHL LL
Sbjct: 96 LDLASLKSIREFAAKIIEEEERVDILINNAGVMRC--PHWTTEDGFEMQFGVNHLGHFLL 153
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ LL L +PSRIIN++S+ H G +D +D+N + RKY + Y SKLA + F+
Sbjct: 154 TNLLLDKLKASAPSRIINLSSLAHVAGHIDFDDLNWQT--RKYNTKAAYCQSKLAIVLFT 211
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVAR 275
L +RL SG+ V + PG+ T + R
Sbjct: 212 KELSRRLQG-SGVTVNALHPGVARTELGR 239
|
Does not exhibit retinol dehydrogenase (RDH) activity in vitro. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 298 | ||||||
| 18138085 | 385 | forever young oxidoreductase [Solanum bu | 0.989 | 0.766 | 0.797 | 1e-134 | |
| 18138083 | 385 | forever young oxidoreductase [Solanum ly | 0.993 | 0.768 | 0.791 | 1e-133 | |
| 255557092 | 367 | short-chain dehydrogenase, putative [Ric | 0.919 | 0.746 | 0.839 | 1e-130 | |
| 449439227 | 390 | PREDICTED: WW domain-containing oxidored | 0.912 | 0.697 | 0.867 | 1e-129 | |
| 225456449 | 371 | PREDICTED: retinol dehydrogenase 11 [Vit | 0.936 | 0.752 | 0.863 | 1e-129 | |
| 356531044 | 378 | PREDICTED: retinol dehydrogenase 11-like | 0.983 | 0.775 | 0.785 | 1e-128 | |
| 356560045 | 377 | PREDICTED: retinol dehydrogenase 11-like | 0.973 | 0.769 | 0.776 | 1e-126 | |
| 12004621 | 376 | forever young oxidoreductase [Arabidopsi | 0.969 | 0.768 | 0.771 | 1e-121 | |
| 79487049 | 376 | Rossmann-fold NAD(P)-binding domain-cont | 0.969 | 0.768 | 0.771 | 1e-121 | |
| 110741905 | 376 | forever young gene [Arabidopsis thaliana | 0.969 | 0.768 | 0.771 | 1e-121 |
| >gi|18138085|gb|AAL60069.1|AF216836_1 forever young oxidoreductase [Solanum bulbocastanum] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/297 (79%), Positives = 264/297 (88%), Gaps = 2/297 (0%)
Query: 2 ETTSSSSSTSSPSAAELISKSKRKEALGWMEWLRGWLYVIYEMLFQRILASHLQNPLPLP 61
E ++TSS + L K+ +K+ALGWMEWLRGW Y++YEMLFQRILASHLQNP+PLP
Sbjct: 5 EAEKKKNTTSSEAKQPL--KTAKKKALGWMEWLRGWFYLVYEMLFQRILASHLQNPMPLP 62
Query: 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLN 121
P+ND+TCIVTGSTSGIGREIARQLAE+GAHVVMAVR+ A ELI+KWQEEWSGKGLPLN
Sbjct: 63 PINDVTCIVTGSTSGIGREIARQLAEAGAHVVMAVRSTNRAQELIRKWQEEWSGKGLPLN 122
Query: 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHL 181
IE MELDLLSLDSV RF+EAWN R+ P+HVLINNAGIFSIGEPQKFSKDGYEEHMQVNHL
Sbjct: 123 IEVMELDLLSLDSVARFAEAWNSRMAPVHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHL 182
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
APA+LSILL PSLIRGSPSRIINVNS MHYVGFVD EDMNVVSG+RKYTS++GY GSKLA
Sbjct: 183 APAMLSILLLPSLIRGSPSRIINVNSTMHYVGFVDPEDMNVVSGKRKYTSVVGYGGSKLA 242
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
QI FSS+LQKRLPAESGI+VVC +PGIV TNVARDLP+ +Q Y LIPYFIFN +EG
Sbjct: 243 QIMFSSVLQKRLPAESGISVVCNTPGIVLTNVARDLPQFLQVGYRLIPYFIFNAEEG 299
|
Source: Solanum bulbocastanum Species: Solanum bulbocastanum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18138083|gb|AAL60068.1|AF216835_1 forever young oxidoreductase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 235/297 (79%), Positives = 262/297 (88%), Gaps = 1/297 (0%)
Query: 2 ETTSSSSSTSSPSAAELISKSKRKEALGWMEWLRGWLYVIYEMLFQRILASHLQNPLPLP 61
E +TSS A + + K+ +K+ LGWMEWLRGW Y++YEMLFQRILASHLQNP+PLP
Sbjct: 4 EEAEKKKNTSSSEAKQPL-KTAKKKTLGWMEWLRGWFYLVYEMLFQRILASHLQNPMPLP 62
Query: 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLN 121
P+ND+TCIVTGSTSGIGREIARQLAE+GAHVVMAVR+ A ELI+KWQEEWSGKGLPLN
Sbjct: 63 PINDVTCIVTGSTSGIGREIARQLAEAGAHVVMAVRSTNRAQELIRKWQEEWSGKGLPLN 122
Query: 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHL 181
IE MELDLLSLDSV RF+EAWN R+ P+HVLINNAGIFSIGEPQKFSKDGYEEHMQVNHL
Sbjct: 123 IEVMELDLLSLDSVARFAEAWNARMAPVHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHL 182
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
APA+LSILL PSLIRGSPSRI+NVNS MHYVGFVD EDMNVVSG+RKYTS++GY GSKLA
Sbjct: 183 APAMLSILLLPSLIRGSPSRIVNVNSTMHYVGFVDPEDMNVVSGKRKYTSVVGYGGSKLA 242
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
QI FSSIL KRLPAESGI+VVC +PGIV TNVARDLP+ +Q Y LIPYFIFN +EG
Sbjct: 243 QIMFSSILHKRLPAESGISVVCNTPGIVLTNVARDLPQFLQVGYRLIPYFIFNAEEG 299
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255557092|ref|XP_002519578.1| short-chain dehydrogenase, putative [Ricinus communis] gi|223541236|gb|EEF42789.1| short-chain dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 230/274 (83%), Positives = 258/274 (94%)
Query: 25 KEALGWMEWLRGWLYVIYEMLFQRILASHLQNPLPLPPVNDLTCIVTGSTSGIGREIARQ 84
K LGW+EWLRGW+YV++EMLFQRI+ASHLQNPLPLPPVN LTCIVTGSTSGIG EIARQ
Sbjct: 8 KRGLGWIEWLRGWMYVVHEMLFQRIMASHLQNPLPLPPVNGLTCIVTGSTSGIGTEIARQ 67
Query: 85 LAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144
LAE+GAHV+MAVRN K A+ELI+KWQ EWSG GLPLNIE MELDLLSL+SVV+F+EAWN
Sbjct: 68 LAEAGAHVIMAVRNTKGAHELIRKWQNEWSGLGLPLNIEVMELDLLSLESVVKFAEAWNA 127
Query: 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIIN 204
R GPLHVLINNAGIFSIGEPQKFSKDGYE+HMQVNHLAPALLSILL PSL++GSPSRI+N
Sbjct: 128 RSGPLHVLINNAGIFSIGEPQKFSKDGYEQHMQVNHLAPALLSILLLPSLVKGSPSRIVN 187
Query: 205 VNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCV 264
VNSVMHYVGFVDTEDMNV++G+RKYTSL+GY+ SKLAQ+ FSS+L +RLPAE+GI+VVCV
Sbjct: 188 VNSVMHYVGFVDTEDMNVITGKRKYTSLVGYASSKLAQVMFSSVLHRRLPAEAGISVVCV 247
Query: 265 SPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
SPG+V TNVARDLPKIVQAAYHLIPYFIF+PQEG
Sbjct: 248 SPGVVQTNVARDLPKIVQAAYHLIPYFIFSPQEG 281
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439227|ref|XP_004137388.1| PREDICTED: WW domain-containing oxidoreductase-like [Cucumis sativus] gi|449507149|ref|XP_004162946.1| PREDICTED: WW domain-containing oxidoreductase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 236/272 (86%), Positives = 255/272 (93%)
Query: 27 ALGWMEWLRGWLYVIYEMLFQRILASHLQNPLPLPPVNDLTCIVTGSTSGIGREIARQLA 86
ALGW+EWLRGW+YVI+EMLFQRI+ASHLQNP+PLPPVNDLTCIVTGSTSGIGREIARQLA
Sbjct: 32 ALGWVEWLRGWMYVIHEMLFQRIMASHLQNPMPLPPVNDLTCIVTGSTSGIGREIARQLA 91
Query: 87 ESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146
ESGAHVVMAVRN KAA +LIQKWQ EWSG GLPLNIE M+LDLLSLDSVVRF+EA+N R+
Sbjct: 92 ESGAHVVMAVRNPKAALDLIQKWQNEWSGMGLPLNIEVMQLDLLSLDSVVRFAEAYNARM 151
Query: 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVN 206
GPLHVLINNAGIFSIGEPQKFSKDGYEEH+QVNHLAPALLSILL PSLIRGSPSRIINVN
Sbjct: 152 GPLHVLINNAGIFSIGEPQKFSKDGYEEHLQVNHLAPALLSILLLPSLIRGSPSRIINVN 211
Query: 207 SVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSP 266
SVMHYVGFVDTEDMN+VS +RK+TSL+GYS SKLAQ+ FSS+L K+LP ESGINV CVSP
Sbjct: 212 SVMHYVGFVDTEDMNLVSSKRKFTSLVGYSSSKLAQVMFSSVLHKKLPVESGINVACVSP 271
Query: 267 GIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
GIV TNVARDL K VQAAY LIPYFIF+PQEG
Sbjct: 272 GIVHTNVARDLSKFVQAAYGLIPYFIFSPQEG 303
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225456449|ref|XP_002284398.1| PREDICTED: retinol dehydrogenase 11 [Vitis vinifera] gi|297734487|emb|CBI15734.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 241/279 (86%), Positives = 260/279 (93%)
Query: 20 SKSKRKEALGWMEWLRGWLYVIYEMLFQRILASHLQNPLPLPPVNDLTCIVTGSTSGIGR 79
S S K+ LGWMEWLRGWLYVIYEMLFQRI ASHLQNPLPLPP++DLTCI+TGSTSGIG
Sbjct: 6 SSSGGKQGLGWMEWLRGWLYVIYEMLFQRISASHLQNPLPLPPLHDLTCIITGSTSGIGL 65
Query: 80 EIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139
+IARQLAE+GAHVVMAVRN KAAN+LIQKWQ EWSGKGLPLNIE MELDLLSLDSV RF
Sbjct: 66 QIARQLAEAGAHVVMAVRNSKAANDLIQKWQSEWSGKGLPLNIEVMELDLLSLDSVARFC 125
Query: 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSP 199
EAWN R PLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILL PSLIRGSP
Sbjct: 126 EAWNARSAPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLLPSLIRGSP 185
Query: 200 SRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGI 259
SRI+NVNSVMHY+GFVDTEDMNVVSG+RKYTSL+GYS SKLAQ++FSS+L KRLPAE+G+
Sbjct: 186 SRIVNVNSVMHYIGFVDTEDMNVVSGKRKYTSLVGYSSSKLAQVQFSSVLHKRLPAEAGV 245
Query: 260 NVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
+VVCVSPG+V TNVARDLP+IVQAAYHLIPYFIF PQEG
Sbjct: 246 SVVCVSPGVVQTNVARDLPRIVQAAYHLIPYFIFTPQEG 284
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356531044|ref|XP_003534088.1| PREDICTED: retinol dehydrogenase 11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 234/298 (78%), Positives = 265/298 (88%), Gaps = 5/298 (1%)
Query: 1 METTSSSSSTSSPSAAELISKSKRKEALGWMEWLRGWLYVIYEMLFQRILASHLQNPLPL 60
M TT+SSSS +P+ +K +KE LGW+EWLRGW Y++YEMLFQRI+ASHL NP+PL
Sbjct: 1 MATTTSSSSEEAPN-----TKKNKKERLGWIEWLRGWFYLVYEMLFQRIMASHLHNPMPL 55
Query: 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPL 120
PPVNDLTCIVTGSTSGIG EIARQLA+SGAHVVMAVRN KAA ELIQKWQ + G +PL
Sbjct: 56 PPVNDLTCIVTGSTSGIGLEIARQLAQSGAHVVMAVRNTKAAQELIQKWQVDSEGLSIPL 115
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNH 180
N+E M++DLLSLDSV RF+EAWN R PLHVLINNAGIFSIGEPQKFSKDGYE+H+QVNH
Sbjct: 116 NVEVMQVDLLSLDSVTRFAEAWNARSAPLHVLINNAGIFSIGEPQKFSKDGYEQHLQVNH 175
Query: 181 LAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
LAPALLSILL PSLIRGSPSRI+NVNS+MH+VGFVDTEDMNV SG+RK++SL+GYS SKL
Sbjct: 176 LAPALLSILLLPSLIRGSPSRIVNVNSIMHHVGFVDTEDMNVTSGKRKFSSLVGYSSSKL 235
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
A+I FSSIL KRLPAESGI+V+CVSPGIV TNVARDLPK+VQAAYHLIPYFIF+ QEG
Sbjct: 236 AEIMFSSILNKRLPAESGISVLCVSPGIVQTNVARDLPKLVQAAYHLIPYFIFSAQEG 293
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356560045|ref|XP_003548306.1| PREDICTED: retinol dehydrogenase 11-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/295 (77%), Positives = 262/295 (88%), Gaps = 5/295 (1%)
Query: 4 TSSSSSTSSPSAAELISKSKRKEALGWMEWLRGWLYVIYEMLFQRILASHLQNPLPLPPV 63
T+SSSS +P+ +K +KE LGW+EWLRGW YV+YEMLFQRI+ASHL NP+PLPPV
Sbjct: 3 TTSSSSEEAPN-----TKKNKKECLGWIEWLRGWFYVVYEMLFQRIMASHLHNPMPLPPV 57
Query: 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
NDLTCIVTGSTSGIG EIARQLA+SGAHVVMAVRN KAA ELIQKWQ + G +PLN+E
Sbjct: 58 NDLTCIVTGSTSGIGLEIARQLAQSGAHVVMAVRNTKAAQELIQKWQVDSEGLSIPLNVE 117
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAP 183
M++DLLSLDSV RF+EAWN R PLHVLINNAGIFSIGEPQKFSKDGYE+H+QVNHLAP
Sbjct: 118 VMQVDLLSLDSVTRFAEAWNARSAPLHVLINNAGIFSIGEPQKFSKDGYEQHLQVNHLAP 177
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
ALLSILL PSLIRGSPSRI+NVNS+MH+VGFVDTEDMN+ SG+RK++S++GYS SKLA+I
Sbjct: 178 ALLSILLLPSLIRGSPSRIVNVNSIMHHVGFVDTEDMNLTSGKRKFSSMVGYSSSKLAEI 237
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
FSS + KRLPAESGI+V+CVSPGIV TNVARDLPK+VQAAYHLIPYFIF+ QEG
Sbjct: 238 MFSSTINKRLPAESGISVLCVSPGIVQTNVARDLPKLVQAAYHLIPYFIFSAQEG 292
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12004621|gb|AAG44120.1|AF217275_1 forever young oxidoreductase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/293 (77%), Positives = 259/293 (88%), Gaps = 4/293 (1%)
Query: 6 SSSSTSSPSAAELISKSKRKEALGWMEWLRGWLYVIYEMLFQRILASHLQNPLPLPPVND 65
S +TSSPS A +K+K+ LGWMEW+RGW V E+LFQRI ASHL+NPLPLP VND
Sbjct: 2 SDETTSSPSPA----PAKKKQNLGWMEWMRGWSSVFGEILFQRITASHLENPLPLPSVND 57
Query: 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
LTC+VTGSTSGIGRE ARQLAE+GAHVVMAVRN KAA ELI +WQ EWSGKGLPLNIEAM
Sbjct: 58 LTCVVTGSTSGIGRETARQLAEAGAHVVMAVRNTKAAQELILQWQNEWSGKGLPLNIEAM 117
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
E+DLLSLDSV RF+EA+N RLGPLHVLINNAG+F++GE QKFS++GYE+HMQVNHLAPAL
Sbjct: 118 EIDLLSLDSVARFAEAFNARLGPLHVLINNAGMFAMGEAQKFSEEGYEQHMQVNHLAPAL 177
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
LS+LL PSLIRGSPSRIINVNSVMH VGFVD +DMNVVSGRRKY+SL+GYS SKLAQI F
Sbjct: 178 LSVLLLPSLIRGSPSRIINVNSVMHSVGFVDPDDMNVVSGRRKYSSLIGYSSSKLAQIMF 237
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
SSIL K+LP E+G++VVC+SPG+V TNVARDL +I+QA Y +IPYFIF+PQEG
Sbjct: 238 SSILFKKLPLETGVSVVCLSPGVVLTNVARDLSRILQALYAVIPYFIFSPQEG 290
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79487049|ref|NP_194506.4| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gi|332659990|gb|AEE85390.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/293 (77%), Positives = 259/293 (88%), Gaps = 4/293 (1%)
Query: 6 SSSSTSSPSAAELISKSKRKEALGWMEWLRGWLYVIYEMLFQRILASHLQNPLPLPPVND 65
S +TSSPS A +K+K+ LGWMEW+RGW V E+LFQRI ASHL+NPLPLP VND
Sbjct: 2 SDETTSSPSPA----PAKKKQNLGWMEWMRGWSSVFGEILFQRITASHLENPLPLPSVND 57
Query: 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
LTC+VTGSTSGIGRE ARQLAE+GAHVVMAVRN KAA ELI +WQ EWSGKGLPLNIEAM
Sbjct: 58 LTCVVTGSTSGIGRETARQLAEAGAHVVMAVRNTKAAQELILQWQNEWSGKGLPLNIEAM 117
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
E+DLLSLDSV RF+EA+N RLGPLHVLINNAG+F++GE QKFS++GYE+HMQVNHLAPAL
Sbjct: 118 EIDLLSLDSVARFAEAFNARLGPLHVLINNAGMFAMGEAQKFSEEGYEQHMQVNHLAPAL 177
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
LS+LL PSLIRGSPSRIINVNSVMH VGFVD +DMNVVSGRRKY+SL+GYS SKLAQI F
Sbjct: 178 LSVLLLPSLIRGSPSRIINVNSVMHSVGFVDPDDMNVVSGRRKYSSLIGYSSSKLAQIMF 237
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
SSIL K+LP E+G++VVC+SPG+V TNVARDL +I+QA Y +IPYFIF+PQEG
Sbjct: 238 SSILFKKLPLETGVSVVCLSPGVVLTNVARDLSRILQALYAVIPYFIFSPQEG 290
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110741905|dbj|BAE98894.1| forever young gene [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/293 (77%), Positives = 259/293 (88%), Gaps = 4/293 (1%)
Query: 6 SSSSTSSPSAAELISKSKRKEALGWMEWLRGWLYVIYEMLFQRILASHLQNPLPLPPVND 65
S +TSSPS A +K+K+ LGWMEW+RGW V E+LFQRI ASHL+NPLPLP VND
Sbjct: 2 SDETTSSPSPA----PAKKKQNLGWMEWMRGWSSVFGEILFQRITASHLENPLPLPSVND 57
Query: 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
LTC+VTGSTSGIGRE ARQLAE+GAHVVMAVRN KAA ELI +WQ EWSGKGLPLNIEAM
Sbjct: 58 LTCVVTGSTSGIGRETARQLAEAGAHVVMAVRNTKAAQELILQWQNEWSGKGLPLNIEAM 117
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
E+DLLSLDSV RF+EA+N RLGPLHVLINNAG+F++GE QKFS++GYE+HMQVNHLAPAL
Sbjct: 118 EIDLLSLDSVARFAEAFNARLGPLHVLINNAGMFAMGEEQKFSEEGYEQHMQVNHLAPAL 177
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
LS+LL PSLIRGSPSRIINVNSVMH VGFVD +DMNVVSGRRKY+SL+GYS SKLAQI F
Sbjct: 178 LSVLLLPSLIRGSPSRIINVNSVMHSVGFVDPDDMNVVSGRRKYSSLIGYSSSKLAQIMF 237
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
SSIL K+LP E+G++VVC+SPG+V TNVARDL +I+QA Y +IPYFIF+PQEG
Sbjct: 238 SSILFKKLPLETGVSVVCLSPGVVLTNVARDLSRILQALYAVIPYFIFSPQEG 290
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 298 | ||||||
| TAIR|locus:2137772 | 376 | FEY "FOREVER YOUNG" [Arabidops | 0.929 | 0.736 | 0.790 | 1.8e-117 | |
| TAIR|locus:2163741 | 375 | AT5G53090 [Arabidopsis thalian | 0.926 | 0.736 | 0.789 | 1.6e-116 | |
| TAIR|locus:2163751 | 364 | AT5G53100 [Arabidopsis thalian | 0.926 | 0.758 | 0.723 | 3.4e-109 | |
| UNIPROTKB|Q8N5I4 | 330 | DHRSX "Dehydrogenase/reductase | 0.832 | 0.751 | 0.358 | 4.7e-32 | |
| MGI|MGI:2181510 | 335 | Dhrsx "dehydrogenase/reductase | 0.778 | 0.692 | 0.369 | 4.2e-31 | |
| ZFIN|ZDB-GENE-060825-39 | 336 | zgc:153441 "zgc:153441" [Danio | 0.671 | 0.595 | 0.377 | 5.4e-31 | |
| UNIPROTKB|F1P957 | 317 | RDH11 "Uncharacterized protein | 0.734 | 0.690 | 0.369 | 8.8e-31 | |
| FB|FBgn0033204 | 300 | CG2065 [Drosophila melanogaste | 0.664 | 0.66 | 0.379 | 1.8e-30 | |
| ZFIN|ZDB-GENE-050522-387 | 298 | zgc:112332 "zgc:112332" [Danio | 0.758 | 0.758 | 0.377 | 1.8e-30 | |
| ZFIN|ZDB-GENE-070912-611 | 292 | si:dkey-94e7.2 "si:dkey-94e7.2 | 0.751 | 0.767 | 0.364 | 3.8e-30 |
| TAIR|locus:2137772 FEY "FOREVER YOUNG" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 219/277 (79%), Positives = 251/277 (90%)
Query: 22 SKRKEALGWMEWLRGWLYVIYEMLFQRILASHLQNPLPLPPVNDLTCIVTGSTSGIGREI 81
+K+K+ LGWMEW+RGW V E+LFQRI ASHL+NPLPLP VNDLTC+VTGSTSGIGRE
Sbjct: 14 AKKKQNLGWMEWMRGWSSVFGEILFQRITASHLENPLPLPSVNDLTCVVTGSTSGIGRET 73
Query: 82 ARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141
ARQLAE+GAHVVMAVRN KAA ELI +WQ EWSGKGLPLNIEAME+DLLSLDSV RF+EA
Sbjct: 74 ARQLAEAGAHVVMAVRNTKAAQELILQWQNEWSGKGLPLNIEAMEIDLLSLDSVARFAEA 133
Query: 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSR 201
+N RLGPLHVLINNAG+F++GE QKFS++GYE+HMQVNHLAPALLS+LL PSLIRGSPSR
Sbjct: 134 FNARLGPLHVLINNAGMFAMGEAQKFSEEGYEQHMQVNHLAPALLSVLLLPSLIRGSPSR 193
Query: 202 IINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINV 261
IINVNSVMH VGFVD +DMNVVSGRRKY+SL+GYS SKLAQI FSSIL K+LP E+G++V
Sbjct: 194 IINVNSVMHSVGFVDPDDMNVVSGRRKYSSLIGYSSSKLAQIMFSSILFKKLPLETGVSV 253
Query: 262 VCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
VC+SPG+V TNVARDL +I+QA Y +IPYFIF+PQEG
Sbjct: 254 VCLSPGVVLTNVARDLSRILQALYAVIPYFIFSPQEG 290
|
|
| TAIR|locus:2163741 AT5G53090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1148 (409.2 bits), Expect = 1.6e-116, P = 1.6e-116
Identities = 218/276 (78%), Positives = 246/276 (89%)
Query: 23 KRKEALGWMEWLRGWLYVIYEMLFQRILASHLQNPLPLPPVNDLTCIVTGSTSGIGREIA 82
K+KE LGW+E ++GW V +E LFQR +ASHLQNPLPLP +N LTCIVTGSTSGIGRE A
Sbjct: 14 KKKEGLGWIESIKGWSCVFHEFLFQRFMASHLQNPLPLPSLNHLTCIVTGSTSGIGRETA 73
Query: 83 RQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142
RQLAE+GA VVMAVRN KAA+ELIQ+WQ+EWSGKG+PLN+EAMELDLLSLDSVV F W
Sbjct: 74 RQLAEAGARVVMAVRNTKAAHELIQQWQKEWSGKGIPLNLEAMELDLLSLDSVVGFCNLW 133
Query: 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRI 202
N RL PLHVLINNAGIFS+GE QKFSKDGYE+HMQVNHLAPALLS+LL PSLIRGSPSRI
Sbjct: 134 NARLSPLHVLINNAGIFSMGEEQKFSKDGYEQHMQVNHLAPALLSLLLLPSLIRGSPSRI 193
Query: 203 INVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVV 262
INVNSVMHYVGFVD +DMNVVSG+RK+TSL+GYSGSKLAQ+ FS++L KRLP E+ I+VV
Sbjct: 194 INVNSVMHYVGFVDPDDMNVVSGKRKFTSLVGYSGSKLAQVMFSNVLLKRLPLETRISVV 253
Query: 263 CVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
C+SPGIV TNVARDLP+ VQ Y LIPYFIF+PQEG
Sbjct: 254 CLSPGIVLTNVARDLPRYVQVQYALIPYFIFSPQEG 289
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| TAIR|locus:2163751 AT5G53100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1079 (384.9 bits), Expect = 3.4e-109, P = 3.4e-109
Identities = 201/278 (72%), Positives = 240/278 (86%)
Query: 23 KRKEALGWMEWLRGWLYVIYEMLFQRILASHLQNPLPLPPVNDLTCIVTGSTSGIGREIA 82
K+ + LGW++W+RGW V+ E+L QRI+ASHLQ P LPP+N LTCIVTGSTSGIG E A
Sbjct: 2 KKNDGLGWIQWMRGWFNVVQEILLQRIMASHLQIPFHLPPLNHLTCIVTGSTSGIGSETA 61
Query: 83 RQLAESGAHVVMAVRNLKAANELIQKWQEEWS--GKGLPLNIEAMELDLLSLDSVVRFSE 140
RQLAE+GAHVVMAVRN+KAA+ELIQ+WQ +WS G+GLPLNI+AMELDLLSLDSVVRFS
Sbjct: 62 RQLAEAGAHVVMAVRNIKAAHELIQQWQTKWSASGEGLPLNIQAMELDLLSLDSVVRFSN 121
Query: 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPS 200
AWN RL PLHVLINNAG+F++G QKFS+DGYE+HMQVNHLAPALLS+LL PSLIR S S
Sbjct: 122 AWNARLAPLHVLINNAGMFAMGGAQKFSEDGYEQHMQVNHLAPALLSLLLLPSLIRASRS 181
Query: 201 RIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGIN 260
RIINVNSVMHYVGFVD DMN VSG+RK++SL YS SKLAQ+ F+++L K+LP E+GI+
Sbjct: 182 RIINVNSVMHYVGFVDPNDMNFVSGKRKFSSLSAYSSSKLAQVMFNNVLLKKLPLETGIS 241
Query: 261 VVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
VVC+SPG+V TN+ RDLP++VQ Y +PYFIF+PQEG
Sbjct: 242 VVCLSPGVVQTNITRDLPRLVQDLYSALPYFIFSPQEG 279
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| UNIPROTKB|Q8N5I4 DHRSX "Dehydrogenase/reductase SDR family member on chromosome X" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 95/265 (35%), Positives = 146/265 (55%)
Query: 40 VIYEMLFQRILASHLQNPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99
VI L +R L+ P+ PP D IVTG T GIG A+ LA G HV++A N
Sbjct: 20 VILAQLLRRCRGGFLE-PV-FPPRPDRVAIVTGGTDGIGYSTAKHLARLGMHVIIAGNND 77
Query: 100 KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIF 159
A +++ K +EE L +E + DL S+ S+ +F + + + PLHVLINNAG+
Sbjct: 78 SKAKQVVSKIKEET----LNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVLINNAGVM 133
Query: 160 SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR-GSP---SRIINVNSVMHYVGFV 215
+ PQ+ ++DG+EEH +N+L LL+ LL +L GSP +R++ V+S HYV +
Sbjct: 134 MV--PQRKTRDGFEEHFGLNYLGHFLLTNLLLDTLKESGSPGHSARVVTVSSATHYVAEL 191
Query: 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAE-SGINVVCVSPGIVSTNVA 274
+ +D+ Y+ Y+ SKLA + F+ LQ+ L AE S + V PG+V+T+V
Sbjct: 192 NMDDLQ---SSACYSPHAAYAQSKLALVLFTYHLQRLLAAEGSHVTANVVDPGVVNTDVY 248
Query: 275 RDLPKIVQAAYHLIPYFIFN-PQEG 298
+ + + A L+ + +F P EG
Sbjct: 249 KHVFWATRLAKKLLGWLLFKTPDEG 273
|
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| MGI|MGI:2181510 Dhrsx "dehydrogenase/reductase (SDR family) X chromosome" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 92/249 (36%), Positives = 132/249 (53%)
Query: 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGK 116
P LPP IVTG+T+GIGR ARQLA G VV+A + E++ + E
Sbjct: 35 PPVLPPQPGRVAIVTGATAGIGRSTARQLARLGMCVVVAGNDEHRGQEVVSSIRAEMGSD 94
Query: 117 GLPLNIEAMELDLLSLDSVVRFSEAWNGRLG-PLHVLINNAGIFSIGEPQKFSKDGYEEH 175
+ LDL SL SV F+ + LG PLH+L+NNAG+ EP+ ++DG+E H
Sbjct: 95 ----RAHFLPLDLASLASVRGFARDFQA-LGLPLHLLVNNAGVML--EPRAETEDGFERH 147
Query: 176 MQVNHLAPALLSILLFPSL----IRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTS 231
+ VN L LL++LL P+L G SR++ V S HYVG VD D++ GR Y+
Sbjct: 148 LGVNFLGHFLLTLLLLPALRASGAEGRGSRVVTVGSATHYVGTVDMADLH---GRHAYSP 204
Query: 232 LMGYSGSKLAQIKFSSILQKRLPAESG-INVVCVSPGIVSTNVARDLPKIVQAAYHLIPY 290
Y+ SKLA F+ LQ+ L A + PG+V T + R +++ A + +
Sbjct: 205 YAAYAQSKLALALFALQLQRILDARGDPVTSNMADPGVVDTELYRHAGWVLRTAKRFLGW 264
Query: 291 FIF-NPQEG 298
+F +P+EG
Sbjct: 265 LVFKSPEEG 273
|
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| ZFIN|ZDB-GENE-060825-39 zgc:153441 "zgc:153441" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 79/209 (37%), Positives = 121/209 (57%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T ++TG+ +GIG+E AR +A GA VVMA R+L A + + + +G +I
Sbjct: 54 TVVITGANTGIGKETARDMARRGARVVMACRDLSKAEKAAAEIRRS-TGNA---DIVVRH 109
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
L+L SL SV +F+ + L +LINNAG+ P+ ++DGYE VNHL LL
Sbjct: 110 LNLASLHSVRQFAHQYTATEDRLDILINNAGVMMC--PKSLTEDGYETQFAVNHLGHFLL 167
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
++LL L + SPSR+INV+S+ H G + +D+N + Y SL+ Y SKLA + F+
Sbjct: 168 TVLLLDMLKKSSPSRVINVSSITHKGGKIHFDDLNF--NKAPYDSLVSYRQSKLANLLFT 225
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVAR 275
L +R+ SG++V + PG++ T + R
Sbjct: 226 RELARRIKG-SGVSVFSLHPGVIRTELGR 253
|
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| UNIPROTKB|F1P957 RDH11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
Identities = 85/230 (36%), Positives = 128/230 (55%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+ +GIG+E A++LA+ GA V +A R++ EL+ + + +G L +LD
Sbjct: 44 VVTGANTGIGKETAKELAQRGARVYLACRDV-LKGELVAREIQTMTGNKQVL---VRKLD 99
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
L S+ F++ + LH+LINNAG+ P + DG+E HM VNHL LL+
Sbjct: 100 LADTKSIRAFAKGFLAEEKHLHILINNAGVMMC--PYTKTVDGFEMHMGVNHLGHFLLTH 157
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
LL L +PSRI+NV+S+ H++G + D+ G + Y S + Y SKLA I F+
Sbjct: 158 LLLEKLKESAPSRIVNVSSLAHHLGRIHFHDLQ---GEKFYNSGLAYCHSKLANILFTQE 214
Query: 249 LQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
L +RL SGI V PG V + + R P ++ + L +FI PQ+G
Sbjct: 215 LARRLKG-SGITAYSVHPGTVKSELVRHSP-FMKWMWWLFSFFIKTPQQG 262
|
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| FB|FBgn0033204 CG2065 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 79/208 (37%), Positives = 122/208 (58%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
IVTG+ +GIG+E ++A+ G V MA R++ + Q E + + NI + ELD
Sbjct: 18 IVTGANTGIGKETVLEIAKRGGTVYMACRDMNRCEKARQDIIRETNNQ----NIFSRELD 73
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
L SL+S+ +F+ + LHVLINNAG+ P+ +KDG+E + VNH+ LL+
Sbjct: 74 LSSLESIRKFAAGFKKEQDKLHVLINNAGVMHC--PRTLTKDGFEMQLGVNHMGHFLLTH 131
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
LL L + +PSRI+NV+S++H GF+ T D+N + Y+ + YS SKLA + F+
Sbjct: 132 LLLDVLKKTAPSRIVNVSSLVHTQGFIKTADLN---SEKSYSRIGAYSQSKLANVLFTRE 188
Query: 249 LQKRLPAESGINVVCVSPGIVSTNVARD 276
L KRL +G+ + PG V T ++R+
Sbjct: 189 LAKRLEG-TGVTTNSLHPGAVDTELSRN 215
|
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| ZFIN|ZDB-GENE-050522-387 zgc:112332 "zgc:112332" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 89/236 (37%), Positives = 126/236 (53%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
+++ T I+TG+ +GIG+E AR LA GA VVMA R+L+ A ++ + SG NI
Sbjct: 18 LDEKTVIITGANTGIGKETARDLARRGARVVMACRDLEKAEAARRELMDN-SGNQ---NI 73
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA 182
+LDL S+ F+E N +++LINNAGI P + DG+E VNHL
Sbjct: 74 VVKKLDLADTKSIKAFAELINKEEKQVNILINNAGIMMC--PYSKTADGFEMQFGVNHLG 131
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
LL LL L + +PSRI+NV SV H + ED+N + Y+ Y SKLA
Sbjct: 132 HFLLIYLLLDLLKKSTPSRIVNVASVAHTWSGIHLEDIN---SEKVYSPRRAYGQSKLAN 188
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
I + L KRL SG+NV + PG+V + + R+L K Q A+ + F +G
Sbjct: 189 ILCTRSLAKRLQG-SGVNVYSLHPGVVQSELFRNLSKPAQIAFKVFSPFTKTTSQG 243
|
|
| ZFIN|ZDB-GENE-070912-611 si:dkey-94e7.2 "si:dkey-94e7.2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 86/236 (36%), Positives = 126/236 (53%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
++D T I+TG+ +GIG+E + LA+ G ++MA R+++ A ++ EE SG NI
Sbjct: 14 LDDKTIIITGANTGIGKETTKDLAKRGPRIIMACRDVEKAERAQREIMEE-SGNQ---NI 69
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA 182
+LDL S+ F+E N LH+LINNAG+ P + DG+E VNHL
Sbjct: 70 VIRKLDLSDTRSIREFAEVINSEERSLHLLINNAGVMMC--PYSKTADGFEMQFGVNHLG 127
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
LL+ LL L R +PSRIIN++S+ H G + +D+N R Y S Y SKLA
Sbjct: 128 HFLLTFLLIDLLKRSAPSRIINLSSMAHSWGTITLDDIN---SERNYHSRRAYGQSKLAN 184
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
I F+ L K+L G+ V PGIV T + R + + + ++ F P +G
Sbjct: 185 ILFTRSLAKKL---KGVTSYAVHPGIVRTELKRHMNLGLLIMWKVVRPFTKTPVQG 237
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00018015001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (371 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 298 | |||
| cd05327 | 269 | cd05327, retinol-DH_like_SDR_c_like, retinol dehyd | 1e-65 | |
| cd09807 | 274 | cd09807, retinol-DH_like_SDR_c, retinol dehydrogen | 4e-46 | |
| cd05233 | 234 | cd05233, SDR_c, classical (c) SDRs | 9e-45 | |
| PRK06197 | 306 | PRK06197, PRK06197, short chain dehydrogenase; Pro | 3e-44 | |
| cd09809 | 284 | cd09809, human_WWOX_like_SDR_c-like, human WWOX (W | 2e-40 | |
| PRK06196 | 315 | PRK06196, PRK06196, oxidoreductase; Provisional | 1e-36 | |
| COG1028 | 251 | COG1028, FabG, Dehydrogenases with different speci | 2e-35 | |
| COG0300 | 265 | COG0300, DltE, Short-chain dehydrogenases of vario | 1e-31 | |
| cd08932 | 223 | cd08932, HetN_like_SDR_c, HetN oxidoreductase-like | 2e-29 | |
| PRK05565 | 247 | PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) | 5e-29 | |
| cd09810 | 311 | cd09810, LPOR_like_SDR_c_like, light-dependent pro | 2e-28 | |
| cd05333 | 240 | cd05333, BKR_SDR_c, beta-Keto acyl carrier protein | 2e-27 | |
| cd05324 | 225 | cd05324, carb_red_PTCR-like_SDR_c, Porcine testicu | 6e-27 | |
| cd05332 | 257 | cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxyste | 3e-26 | |
| pfam00106 | 167 | pfam00106, adh_short, short chain dehydrogenase | 1e-25 | |
| cd05374 | 248 | cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxyster | 2e-25 | |
| PRK05854 | 313 | PRK05854, PRK05854, short chain dehydrogenase; Pro | 1e-24 | |
| PRK05653 | 246 | PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-24 | |
| PRK07453 | 322 | PRK07453, PRK07453, protochlorophyllide oxidoreduc | 3e-24 | |
| PRK12826 | 251 | PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-prote | 4e-24 | |
| PRK12825 | 249 | PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-23 | |
| PRK05557 | 248 | PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-23 | |
| COG4221 | 246 | COG4221, COG4221, Short-chain alcohol dehydrogenas | 3e-23 | |
| cd05329 | 251 | cd05329, TR_SDR_c, tropinone reductase-I and II (T | 1e-22 | |
| cd05325 | 233 | cd05325, carb_red_sniffer_like_SDR_c, carbonyl red | 1e-22 | |
| cd05370 | 228 | cd05370, SDR_c2, classical (c) SDR, subgroup 2 | 4e-22 | |
| TIGR01830 | 239 | TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier | 1e-20 | |
| PRK07231 | 251 | PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) | 2e-20 | |
| cd05347 | 248 | cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogena | 3e-20 | |
| PRK06181 | 263 | PRK06181, PRK06181, short chain dehydrogenase; Pro | 6e-20 | |
| PLN00015 | 308 | PLN00015, PLN00015, protochlorophyllide reductase | 7e-20 | |
| PRK07060 | 245 | PRK07060, PRK07060, short chain dehydrogenase; Pro | 8e-20 | |
| TIGR01963 | 255 | TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | 1e-19 | |
| PRK08264 | 238 | PRK08264, PRK08264, short chain dehydrogenase; Val | 3e-19 | |
| cd05354 | 235 | cd05354, SDR_c7, classical (c) SDR, subgroup 7 | 3e-19 | |
| PRK12939 | 250 | PRK12939, PRK12939, short chain dehydrogenase; Pro | 6e-19 | |
| PRK12429 | 258 | PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenas | 7e-19 | |
| COG3967 | 245 | COG3967, DltE, Short-chain dehydrogenase involved | 8e-19 | |
| cd05344 | 253 | cd05344, BKR_like_SDR_like, putative beta-ketoacyl | 9e-19 | |
| cd05364 | 253 | cd05364, SDR_c11, classical (c) SDR, subgroup 11 | 1e-18 | |
| PRK07825 | 273 | PRK07825, PRK07825, short chain dehydrogenase; Pro | 6e-18 | |
| PRK09072 | 263 | PRK09072, PRK09072, short chain dehydrogenase; Pro | 9e-18 | |
| TIGR01289 | 314 | TIGR01289, LPOR, light-dependent protochlorophylli | 9e-18 | |
| cd05339 | 243 | cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hy | 1e-17 | |
| cd05323 | 244 | cd05323, ADH_SDR_c_like, insect type alcohol dehyd | 1e-17 | |
| cd05362 | 243 | cd05362, THN_reductase-like_SDR_c, tetrahydroxynap | 2e-17 | |
| cd08942 | 250 | cd08942, RhlG_SDR_c, RhlG and related beta-ketoacy | 2e-17 | |
| PRK06914 | 280 | PRK06914, PRK06914, short chain dehydrogenase; Pro | 2e-17 | |
| PRK12824 | 245 | PRK12824, PRK12824, acetoacetyl-CoA reductase; Pro | 3e-17 | |
| cd05356 | 239 | cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxyst | 5e-17 | |
| cd08939 | 239 | cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine | 6e-17 | |
| cd08951 | 260 | cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 | 7e-17 | |
| cd08935 | 271 | cd08935, mannonate_red_SDR_c, putative D-mannonate | 1e-16 | |
| cd05346 | 249 | cd05346, SDR_c5, classical (c) SDR, subgroup 5 | 1e-16 | |
| PRK09242 | 257 | PRK09242, PRK09242, tropinone reductase; Provision | 4e-16 | |
| PRK08219 | 227 | PRK08219, PRK08219, short chain dehydrogenase; Pro | 5e-16 | |
| PRK07067 | 257 | PRK07067, PRK07067, sorbitol dehydrogenase; Provis | 5e-16 | |
| cd09808 | 255 | cd09808, DHRS-12_like_SDR_c-like, human dehydrogen | 7e-16 | |
| PRK12746 | 254 | PRK12746, PRK12746, short chain dehydrogenase; Pro | 1e-15 | |
| PRK05866 | 293 | PRK05866, PRK05866, short chain dehydrogenase; Pro | 2e-15 | |
| cd05351 | 244 | cd05351, XR_like_SDR_c, xylulose reductase-like, c | 5e-15 | |
| cd05345 | 248 | cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl | 5e-15 | |
| PRK12829 | 264 | PRK12829, PRK12829, short chain dehydrogenase; Pro | 6e-15 | |
| TIGR04316 | 250 | TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxyben | 7e-15 | |
| PRK07666 | 239 | PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-14 | |
| PRK08226 | 263 | PRK08226, PRK08226, short chain dehydrogenase; Pro | 1e-14 | |
| cd05360 | 233 | cd05360, SDR_c3, classical (c) SDR, subgroup 3 | 2e-14 | |
| PRK05855 | 582 | PRK05855, PRK05855, short chain dehydrogenase; Val | 2e-14 | |
| cd09805 | 281 | cd09805, type2_17beta_HSD-like_SDR_c, human 17beta | 2e-14 | |
| PRK07063 | 260 | PRK07063, PRK07063, short chain dehydrogenase; Pro | 2e-14 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 2e-14 | |
| PRK12935 | 247 | PRK12935, PRK12935, acetoacetyl-CoA reductase; Pro | 2e-14 | |
| cd08934 | 243 | cd08934, CAD_SDR_c, clavulanic acid dehydrogenase | 3e-14 | |
| PRK08277 | 278 | PRK08277, PRK08277, D-mannonate oxidoreductase; Pr | 4e-14 | |
| cd05367 | 241 | cd05367, SPR-like_SDR_c, sepiapterin reductase (SP | 8e-14 | |
| TIGR01829 | 242 | TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reducta | 8e-14 | |
| cd05343 | 250 | cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, c | 9e-14 | |
| cd05357 | 234 | cd05357, PR_SDR_c, pteridine reductase (PR), class | 1e-13 | |
| PRK06523 | 260 | PRK06523, PRK06523, short chain dehydrogenase; Pro | 1e-13 | |
| cd05365 | 242 | cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroi | 1e-13 | |
| PRK07774 | 250 | PRK07774, PRK07774, short chain dehydrogenase; Pro | 1e-13 | |
| cd08929 | 226 | cd08929, SDR_c4, classical (c) SDR, subgroup 4 | 2e-13 | |
| PRK08213 | 259 | PRK08213, PRK08213, gluconate 5-dehydrogenase; Pro | 3e-13 | |
| cd08940 | 258 | cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydroge | 3e-13 | |
| PRK12827 | 249 | PRK12827, PRK12827, short chain dehydrogenase; Pro | 3e-13 | |
| cd05366 | 257 | cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol | 3e-13 | |
| PRK12828 | 239 | PRK12828, PRK12828, short chain dehydrogenase; Pro | 4e-13 | |
| cd08945 | 258 | cd08945, PKR_SDR_c, Polyketide ketoreductase, clas | 4e-13 | |
| cd05331 | 244 | cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydroz | 4e-13 | |
| cd05369 | 249 | cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reducta | 5e-13 | |
| cd05350 | 239 | cd05350, SDR_c6, classical (c) SDR, subgroup 6 | 6e-13 | |
| PRK06124 | 256 | PRK06124, PRK06124, gluconate 5-dehydrogenase; Pro | 6e-13 | |
| PRK12937 | 245 | PRK12937, PRK12937, short chain dehydrogenase; Pro | 7e-13 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 9e-13 | |
| TIGR01832 | 248 | TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogena | 1e-12 | |
| cd05368 | 241 | cd05368, DHRS6_like_SDR_c, human DHRS6-like, class | 1e-12 | |
| PRK07326 | 237 | PRK07326, PRK07326, short chain dehydrogenase; Pro | 1e-12 | |
| PRK06138 | 252 | PRK06138, PRK06138, short chain dehydrogenase; Pro | 1e-12 | |
| cd05341 | 247 | cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta | 1e-12 | |
| TIGR03206 | 250 | TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxy | 1e-12 | |
| cd05363 | 254 | cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), | 1e-12 | |
| PRK06182 | 273 | PRK06182, PRK06182, short chain dehydrogenase; Val | 2e-12 | |
| PRK06841 | 255 | PRK06841, PRK06841, short chain dehydrogenase; Pro | 3e-12 | |
| PRK07454 | 241 | PRK07454, PRK07454, short chain dehydrogenase; Pro | 3e-12 | |
| PRK12745 | 256 | PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-prote | 3e-12 | |
| PRK12748 | 256 | PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-prote | 3e-12 | |
| PRK08017 | 256 | PRK08017, PRK08017, oxidoreductase; Provisional | 3e-12 | |
| PRK06123 | 248 | PRK06123, PRK06123, short chain dehydrogenase; Pro | 4e-12 | |
| PRK12936 | 245 | PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-prote | 5e-12 | |
| cd05352 | 252 | cd05352, MDH-like_SDR_c, mannitol dehydrogenase (M | 5e-12 | |
| PRK06179 | 270 | PRK06179, PRK06179, short chain dehydrogenase; Pro | 6e-12 | |
| PRK07832 | 272 | PRK07832, PRK07832, short chain dehydrogenase; Pro | 6e-12 | |
| cd08944 | 246 | cd08944, SDR_c12, classical (c) SDR, subgroup 12 | 6e-12 | |
| PRK07109 | 334 | PRK07109, PRK07109, short chain dehydrogenase; Pro | 6e-12 | |
| PRK08589 | 272 | PRK08589, PRK08589, short chain dehydrogenase; Val | 7e-12 | |
| PRK05650 | 270 | PRK05650, PRK05650, short chain dehydrogenase; Pro | 9e-12 | |
| cd09761 | 242 | cd09761, A3DFK9-like_SDR_c, Clostridium thermocell | 1e-11 | |
| PRK06924 | 251 | PRK06924, PRK06924, short chain dehydrogenase; Pro | 1e-11 | |
| cd05358 | 253 | cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (Glc | 1e-11 | |
| PRK07523 | 255 | PRK07523, PRK07523, gluconate 5-dehydrogenase; Pro | 3e-11 | |
| PRK08220 | 252 | PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehy | 3e-11 | |
| PRK07069 | 251 | PRK07069, PRK07069, short chain dehydrogenase; Val | 3e-11 | |
| PRK06463 | 255 | PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) | 3e-11 | |
| PRK08993 | 253 | PRK08993, PRK08993, 2-deoxy-D-gluconate 3-dehydrog | 3e-11 | |
| cd05338 | 246 | cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogena | 3e-11 | |
| PRK08643 | 256 | PRK08643, PRK08643, acetoin reductase; Validated | 4e-11 | |
| PRK07097 | 265 | PRK07097, PRK07097, gluconate 5-dehydrogenase; Pro | 6e-11 | |
| PRK08324 | 681 | PRK08324, PRK08324, short chain dehydrogenase; Val | 6e-11 | |
| cd05359 | 242 | cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_c | 1e-10 | |
| PRK06077 | 252 | PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-10 | |
| PRK13394 | 262 | PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenas | 1e-10 | |
| PRK08263 | 275 | PRK08263, PRK08263, short chain dehydrogenase; Pro | 1e-10 | |
| cd09806 | 258 | cd09806, type1_17beta-HSD-like_SDR_c, human estrog | 2e-10 | |
| cd05326 | 249 | cd05326, secoisolariciresinol-DH_like_SDR_c, secoi | 2e-10 | |
| PRK06113 | 255 | PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydro | 2e-10 | |
| TIGR02632 | 676 | TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate | 2e-10 | |
| PRK08265 | 261 | PRK08265, PRK08265, short chain dehydrogenase; Pro | 3e-10 | |
| PRK07806 | 248 | PRK07806, PRK07806, short chain dehydrogenase; Pro | 3e-10 | |
| cd05371 | 252 | cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydr | 4e-10 | |
| PRK12384 | 259 | PRK12384, PRK12384, sorbitol-6-phosphate dehydroge | 4e-10 | |
| cd08936 | 256 | cd08936, CR_SDR_c, Porcine peroxisomal carbonyl re | 4e-10 | |
| PRK06484 | 520 | PRK06484, PRK06484, short chain dehydrogenase; Val | 6e-10 | |
| TIGR02415 | 254 | TIGR02415, 23BDH, acetoin reductases | 6e-10 | |
| cd08937 | 256 | cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa | 6e-10 | |
| cd05349 | 246 | cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl | 8e-10 | |
| PRK09134 | 258 | PRK09134, PRK09134, short chain dehydrogenase; Pro | 1e-09 | |
| PRK08261 | 450 | PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-09 | |
| cd08930 | 250 | cd08930, SDR_c8, classical (c) SDR, subgroup 8 | 1e-09 | |
| PRK07074 | 257 | PRK07074, PRK07074, short chain dehydrogenase; Pro | 2e-09 | |
| PRK12743 | 256 | PRK12743, PRK12743, oxidoreductase; Provisional | 2e-09 | |
| PRK12747 | 252 | PRK12747, PRK12747, short chain dehydrogenase; Pro | 2e-09 | |
| cd05355 | 270 | cd05355, SDR_c1, classical (c) SDR, subgroup 1 | 2e-09 | |
| PRK12481 | 251 | PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrog | 2e-09 | |
| PRK05693 | 274 | PRK05693, PRK05693, short chain dehydrogenase; Pro | 2e-09 | |
| PRK06500 | 249 | PRK06500, PRK06500, short chain dehydrogenase; Pro | 3e-09 | |
| cd08933 | 261 | cd08933, RDH_SDR_c, retinal dehydrogenase-like, cl | 4e-09 | |
| PRK08063 | 250 | PRK08063, PRK08063, enoyl-(acyl carrier protein) r | 5e-09 | |
| PRK07035 | 252 | PRK07035, PRK07035, short chain dehydrogenase; Pro | 5e-09 | |
| PRK07677 | 252 | PRK07677, PRK07677, short chain dehydrogenase; Pro | 6e-09 | |
| cd08943 | 250 | cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate al | 7e-09 | |
| cd05340 | 236 | cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-li | 8e-09 | |
| PRK06949 | 258 | PRK06949, PRK06949, short chain dehydrogenase; Pro | 8e-09 | |
| PRK06114 | 254 | PRK06114, PRK06114, short chain dehydrogenase; Pro | 9e-09 | |
| PRK09730 | 247 | PRK09730, PRK09730, putative NAD(P)-binding oxidor | 9e-09 | |
| PRK12859 | 256 | PRK12859, PRK12859, 3-ketoacyl-(acyl-carrier-prote | 1e-08 | |
| PRK06180 | 277 | PRK06180, PRK06180, short chain dehydrogenase; Pro | 2e-08 | |
| cd08941 | 290 | cd08941, 3KS_SDR_c, 3-keto steroid reductase, clas | 2e-08 | |
| PRK07062 | 265 | PRK07062, PRK07062, short chain dehydrogenase; Pro | 2e-08 | |
| PRK08340 | 259 | PRK08340, PRK08340, glucose-1-dehydrogenase; Provi | 2e-08 | |
| PRK06935 | 258 | PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrog | 3e-08 | |
| PRK06398 | 258 | PRK06398, PRK06398, aldose dehydrogenase; Validate | 4e-08 | |
| smart00822 | 180 | smart00822, PKS_KR, This enzymatic domain is part | 4e-08 | |
| PRK06198 | 260 | PRK06198, PRK06198, short chain dehydrogenase; Pro | 4e-08 | |
| PRK08085 | 254 | PRK08085, PRK08085, gluconate 5-dehydrogenase; Pro | 5e-08 | |
| PRK09291 | 257 | PRK09291, PRK09291, short chain dehydrogenase; Pro | 6e-08 | |
| PRK09186 | 256 | PRK09186, PRK09186, flagellin modification protein | 6e-08 | |
| PRK07775 | 274 | PRK07775, PRK07775, short chain dehydrogenase; Pro | 6e-08 | |
| cd05337 | 255 | cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl | 9e-08 | |
| PRK08278 | 273 | PRK08278, PRK08278, short chain dehydrogenase; Pro | 1e-07 | |
| PRK08267 | 260 | PRK08267, PRK08267, short chain dehydrogenase; Pro | 1e-07 | |
| PRK06139 | 330 | PRK06139, PRK06139, short chain dehydrogenase; Pro | 1e-07 | |
| PRK07478 | 254 | PRK07478, PRK07478, short chain dehydrogenase; Pro | 1e-07 | |
| PRK07890 | 258 | PRK07890, PRK07890, short chain dehydrogenase; Pro | 1e-07 | |
| PRK07024 | 257 | PRK07024, PRK07024, short chain dehydrogenase; Pro | 1e-07 | |
| PRK08217 | 253 | PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) | 1e-07 | |
| PRK06947 | 248 | PRK06947, PRK06947, glucose-1-dehydrogenase; Provi | 2e-07 | |
| PRK06200 | 263 | PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydropheny | 3e-07 | |
| cd08931 | 227 | cd08931, SDR_c9, classical (c) SDR, subgroup 9 | 3e-07 | |
| cd05373 | 238 | cd05373, SDR_c10, classical (c) SDR, subgroup 10 | 3e-07 | |
| pfam08659 | 181 | pfam08659, KR, KR domain | 4e-07 | |
| PRK05872 | 296 | PRK05872, PRK05872, short chain dehydrogenase; Pro | 4e-07 | |
| PRK08945 | 247 | PRK08945, PRK08945, putative oxoacyl-(acyl carrier | 4e-07 | |
| PRK08703 | 239 | PRK08703, PRK08703, short chain dehydrogenase; Pro | 5e-07 | |
| PLN02253 | 280 | PLN02253, PLN02253, xanthoxin dehydrogenase | 5e-07 | |
| PRK07577 | 234 | PRK07577, PRK07577, short chain dehydrogenase; Pro | 5e-07 | |
| PRK06171 | 266 | PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydro | 7e-07 | |
| cd09762 | 243 | cd09762, HSDL2_SDR_c, human hydroxysteroid dehydro | 8e-07 | |
| PRK06125 | 259 | PRK06125, PRK06125, short chain dehydrogenase; Pro | 1e-06 | |
| PRK05875 | 276 | PRK05875, PRK05875, short chain dehydrogenase; Pro | 1e-06 | |
| cd09763 | 265 | cd09763, DHRS1-like_SDR_c, human dehydrogenase/red | 1e-06 | |
| PRK12823 | 260 | PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1 | 1e-06 | |
| PRK06701 | 290 | PRK06701, PRK06701, short chain dehydrogenase; Pro | 1e-06 | |
| PRK07856 | 252 | PRK07856, PRK07856, short chain dehydrogenase; Pro | 1e-06 | |
| PRK05867 | 253 | PRK05867, PRK05867, short chain dehydrogenase; Pro | 1e-06 | |
| PRK12938 | 246 | PRK12938, PRK12938, acetyacetyl-CoA reductase; Pro | 2e-06 | |
| PRK06057 | 255 | PRK06057, PRK06057, short chain dehydrogenase; Pro | 2e-06 | |
| PRK07023 | 243 | PRK07023, PRK07023, short chain dehydrogenase; Pro | 2e-06 | |
| PRK06482 | 276 | PRK06482, PRK06482, short chain dehydrogenase; Pro | 4e-06 | |
| TIGR01500 | 256 | TIGR01500, sepiapter_red, sepiapterin reductase | 5e-06 | |
| PRK06194 | 287 | PRK06194, PRK06194, hypothetical protein; Provisio | 6e-06 | |
| cd05348 | 257 | cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydro | 9e-06 | |
| PRK07814 | 263 | PRK07814, PRK07814, short chain dehydrogenase; Pro | 1e-05 | |
| PRK09135 | 249 | PRK09135, PRK09135, pteridine reductase; Provision | 1e-05 | |
| PRK12742 | 237 | PRK12742, PRK12742, oxidoreductase; Provisional | 1e-05 | |
| PRK05993 | 277 | PRK05993, PRK05993, short chain dehydrogenase; Pro | 1e-05 | |
| cd05274 | 375 | cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatt | 2e-05 | |
| PRK08251 | 248 | PRK08251, PRK08251, short chain dehydrogenase; Pro | 2e-05 | |
| TIGR01831 | 239 | TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-prote | 2e-05 | |
| PRK06128 | 300 | PRK06128, PRK06128, oxidoreductase; Provisional | 3e-05 | |
| cd08953 | 436 | cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup | 3e-05 | |
| cd05328 | 250 | cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid de | 4e-05 | |
| PRK08628 | 258 | PRK08628, PRK08628, short chain dehydrogenase; Pro | 4e-05 | |
| PRK06172 | 253 | PRK06172, PRK06172, short chain dehydrogenase; Pro | 5e-05 | |
| PRK10538 | 248 | PRK10538, PRK10538, malonic semialdehyde reductase | 6e-05 | |
| PRK08642 | 253 | PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) | 9e-05 | |
| cd08952 | 480 | cd08952, KR_1_SDR_x, ketoreductase (KR), subgroup | 1e-04 | |
| TIGR03971 | 265 | TIGR03971, SDR_subfam_1, oxidoreductase, SDR famil | 1e-04 | |
| PRK08416 | 260 | PRK08416, PRK08416, 7-alpha-hydroxysteroid dehydro | 1e-04 | |
| PRK05876 | 275 | PRK05876, PRK05876, short chain dehydrogenase; Pro | 2e-04 | |
| PRK06101 | 240 | PRK06101, PRK06101, short chain dehydrogenase; Pro | 2e-04 | |
| PRK08936 | 261 | PRK08936, PRK08936, glucose-1-dehydrogenase; Provi | 2e-04 | |
| cd05269 | 272 | cd05269, TMR_SDR_a, triphenylmethane reductase (TM | 3e-04 | |
| PRK07985 | 294 | PRK07985, PRK07985, oxidoreductase; Provisional | 3e-04 | |
| PRK07576 | 264 | PRK07576, PRK07576, short chain dehydrogenase; Pro | 3e-04 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 3e-04 | |
| PRK06550 | 235 | PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) | 4e-04 | |
| PRK07102 | 243 | PRK07102, PRK07102, short chain dehydrogenase; Pro | 4e-04 | |
| cd05353 | 250 | cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)- | 5e-04 | |
| cd05322 | 257 | cd05322, SDH_SDR_c_like, Sorbitol 6-phosphate dehy | 8e-04 | |
| PRK07792 | 306 | PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) | 8e-04 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 0.001 | |
| pfam13460 | 182 | pfam13460, NAD_binding_10, NADH(P)-binding | 0.003 | |
| PRK07831 | 262 | PRK07831, PRK07831, short chain dehydrogenase; Pro | 0.004 | |
| cd05330 | 257 | cd05330, cyclohexanol_reductase_SDR_c, cyclohexano | 0.004 | |
| PLN02780 | 320 | PLN02780, PLN02780, ketoreductase/ oxidoreductase | 0.004 |
| >gnl|CDD|212492 cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 206 bits (526), Expect = 1e-65
Identities = 87/233 (37%), Positives = 133/233 (57%), Gaps = 17/233 (7%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRN----LKAANELIQKWQEEWSGKGLPLNIEA 124
++TG+ SGIG+E AR+LA+ GAHV++A RN +AA E+ ++ +E
Sbjct: 5 VITGANSGIGKETARELAKRGAHVIIACRNEEKGEEAAAEIKKETGNA--------KVEV 56
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPA 184
++LDL SL SV +F+E + R L +LINNAGI + P++ +KDG+E VN+L
Sbjct: 57 IQLDLSSLASVRQFAEEFLARFPRLDILINNAGIMAP--PRRLTKDGFELQFAVNYLGHF 114
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
LL+ LL P L +PSRI+NV+S+ H G +D D++ + ++Y+ Y SKLA I
Sbjct: 115 LLTNLLLPVLKASAPSRIVNVSSIAHRAGPIDFNDLD-LENNKEYSPYKAYGQSKLANIL 173
Query: 245 FSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQE 297
F+ L +RL +G+ V + PG+V T + R Y L+ F+ E
Sbjct: 174 FTRELARRL-EGTGVTVNALHPGVVRTELLRRNG-SFFLLYKLLRPFLKKSPE 224
|
Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 269 |
| >gnl|CDD|212495 cd09807, retinol-DH_like_SDR_c, retinol dehydrogenases (retinol-DHs), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 156 bits (395), Expect = 4e-46
Identities = 77/213 (36%), Positives = 116/213 (54%), Gaps = 18/213 (8%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNL----KAANELIQKWQEEWSGKGLPLNI 122
T I+TG+ +GIG+E AR+LA GA V+MA R++ +AA E+ + +
Sbjct: 3 TVIITGANTGIGKETARELARRGARVIMACRDMAKCEEAAAEIRRDTLNH--------EV 54
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA 182
LDL SL S+ F+ + L VLINNAG+ P ++DG+E VNHL
Sbjct: 55 IVRHLDLASLKSIRAFAAEFLAEEDRLDVLINNAGVMRC--PYSKTEDGFEMQFGVNHLG 112
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
LL+ LL L + +PSRI+NV+S+ H G ++ +D+N + Y + Y SKLA
Sbjct: 113 HFLLTNLLLDLLKKSAPSRIVNVSSLAHKAGKINFDDLN---SEKSYNTGFAYCQSKLAN 169
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275
+ F+ L +RL +G+ V + PG+V T + R
Sbjct: 170 VLFTRELARRLQG-TGVTVNALHPGVVRTELGR 201
|
Classical SDR-like subgroup containing retinol-DHs and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 274 |
| >gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 9e-45
Identities = 65/211 (30%), Positives = 98/211 (46%), Gaps = 23/211 (10%)
Query: 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMEL 127
+VTG++SGIGR IAR+LA GA VV+A RN +A E + + L N A++
Sbjct: 1 ALVTGASSGIGRAIARRLAREGAKVVLADRNEEAL-------AELAAIEALGGNAVAVQA 53
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLS 187
D+ + V E G L +L+NNAGI G ++ + + ++ + VN LL+
Sbjct: 54 DVSDEEDVEALVEEALEEFGRLDILVNNAGIARPGPLEELTDEDWDRVLDVNLTGVFLLT 113
Query: 188 ILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSS 247
P + + RI+N++S V+G R Y+ SK A +
Sbjct: 114 RAALPHMKKQGGGRIVNISS---------------VAGLRPLPGQAAYAASKAALEGLTR 158
Query: 248 ILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
L L A GI V V+PG+V T + L
Sbjct: 159 SLALEL-APYGIRVNAVAPGLVDTPMLAKLG 188
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 234 |
| >gnl|CDD|235737 PRK06197, PRK06197, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 3e-44
Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 13/232 (5%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+ +G+G E A LA GAHVV+AVRNL + G ++ E
Sbjct: 18 VAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGA----DVTLQE 73
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LDL SL SV ++A + +LINNAG+ P++ + DG+E NHL L
Sbjct: 74 LDLTSLASVRAAADALRAAYPRIDLLINNAGVMY--TPKQTTADGFELQFGTNHLGHFAL 131
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYV-GFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ LL L+ SR++ V+S H + + +D+ R+Y + Y SKLA + F
Sbjct: 132 TGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFDDLQ---WERRYNRVAAYGQSKLANLLF 188
Query: 246 SSILQKRLPAESGINVVCVS--PGIVSTNVARDLPKIVQAAYHLIPYFIFNP 295
+ LQ+RL A +G + V+ PG+ +T +AR+LP+ ++ ++ +
Sbjct: 189 TYELQRRL-AAAGATTIAVAAHPGVSNTELARNLPRALRPVATVLAPLLAQS 239
|
Length = 306 |
| >gnl|CDD|187669 cd09809, human_WWOX_like_SDR_c-like, human WWOX (WW domain-containing oxidoreductase)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-40
Identities = 83/216 (38%), Positives = 125/216 (57%), Gaps = 13/216 (6%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
I+TG+ SGIG E AR A GAHV++A RN+ A+ + + EEW +EAM
Sbjct: 3 VIIITGANSGIGFETARSFALHGAHVILACRNMSRASAAVSRILEEWHKA----RVEAMT 58
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LDL SL SV RF+EA+ + PLHVL+ NA +F++ P ++DG E QVNHL L
Sbjct: 59 LDLASLRSVQRFAEAFKAKNSPLHVLVCNAAVFAL--PWTLTEDGLETTFQVNHLGHFYL 116
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTE----DMNVVS-GRRKYTSLMGYSGSKLA 241
LL L R +P+R+I V+S H + D +++S ++KY S++ Y+ +KL
Sbjct: 117 VQLLEDVLRRSAPARVIVVSSESHRFTDLPDSCGNLDFSLLSPPKKKYWSMLAYNRAKLC 176
Query: 242 QIKFSSILQKRLPAESGINVVCVSPG-IVSTNVARD 276
I FS+ L +RL + GI + PG ++ +++ R+
Sbjct: 177 NILFSNELHRRL-SPRGITSNSLHPGNMMYSSIHRN 211
|
Classical-like SDR domain of human WWOX and related proteins. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 284 |
| >gnl|CDD|235736 PRK06196, PRK06196, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 1e-36
Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 16/213 (7%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T IVTG SG+G E R LA++GAHV++ R A E + G+ +E +
Sbjct: 28 TAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREAL---------AGID-GVEVVM 77
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LDL L+SV F+E + + +LINNAG+ + P+ DG+E NHL L
Sbjct: 78 LDLADLESVRAFAERFLDSGRRIDILINNAGVMAC--PETRVGDGWEAQFATNHLGHFAL 135
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
LL+P+L G+ +R++ ++S H + +D + R Y + Y SK A F+
Sbjct: 136 VNLLWPALAAGAGARVVALSSAGHRRSPIRWDDPHF---TRGYDKWLAYGQSKTANALFA 192
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
L +L + G+ V PG + T + R LP+
Sbjct: 193 VHLD-KLGKDQGVRAFSVHPGGILTPLQRHLPR 224
|
Length = 315 |
| >gnl|CDD|223959 COG1028, FabG, Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-35
Identities = 62/224 (27%), Positives = 95/224 (42%), Gaps = 24/224 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG++SGIGR IAR LA GA VV+A R + E + + A+
Sbjct: 7 VALVTGASSGIGRAIARALAREGARVVVAARR---SEEEAAEALAAAIKEAGGGRAAAVA 63
Query: 127 LDLLS-LDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPA 184
D+ +SV A G + +L+NNAGI P ++ +++ ++ + VN L
Sbjct: 64 ADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAF 123
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
LL+ P + + RI+N++SV G Y+ SK A I
Sbjct: 124 LLTRAALPLMKKQ---RIVNISSVAGLGGPPG---------------QAAYAASKAALIG 165
Query: 245 FSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLI 288
+ L L A GI V V+PG + T + L A +
Sbjct: 166 LTKALALEL-APRGIRVNAVAPGYIDTPMTAALESAELEALKRL 208
|
Length = 251 |
| >gnl|CDD|223377 COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-31
Identities = 60/206 (29%), Positives = 100/206 (48%), Gaps = 21/206 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T ++TG++SGIG E+A+QLA G ++++ R L ++ +++ + +E +
Sbjct: 8 TALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVE-----VEVIP 62
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
DL +++ R + R GP+ VL+NNAG + G + S D EE +Q+N LA L
Sbjct: 63 ADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRL 122
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ + P ++ IIN+ S G + T M V YS +K + FS
Sbjct: 123 TKAVLPGMVERGAGHIINIGSAA---GLIPTPYMAV------------YSATKAFVLSFS 167
Query: 247 SILQKRLPAESGINVVCVSPGIVSTN 272
L++ L +G+ V V PG T
Sbjct: 168 EALREEL-KGTGVKVTAVCPGPTRTE 192
|
Length = 265 |
| >gnl|CDD|212493 cd08932, HetN_like_SDR_c, HetN oxidoreductase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-29
Identities = 61/209 (29%), Positives = 93/209 (44%), Gaps = 26/209 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG++ GIG EIAR LA G V + +RN + L ++EA+
Sbjct: 2 VALVTGASRGIGIEIARALARDGYRVSLGLRNPEDLAAL----------SASGGDVEAVP 51
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D + +A R G + VL++NAGI ++ S E H +N +APA L
Sbjct: 52 YDARDPEDARALVDALRDRFGRIDVLVHNAGIGRPTTLREGSDAELEAHFSINVIAPAEL 111
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ L P+L R++ +NS +SG+R GYS SK A +
Sbjct: 112 TRALLPALREAGSGRVVFLNS---------------LSGKRVLAGNAGYSASKFALRALA 156
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVAR 275
L++ + G+ V V PG V T +A+
Sbjct: 157 HALRQEG-WDHGVRVSAVCPGFVDTPMAQ 184
|
This subgroup includes Anabaena sp. strain PCC 7120 HetN, a putative oxidoreductase involved in heterocyst differentiation, and related proteins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 223 |
| >gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 5e-29
Identities = 66/214 (30%), Positives = 100/214 (46%), Gaps = 23/214 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAV-RNLKAANELIQKWQEEWSGKGLPLNIEAM 125
IVTG++ GIGR IA LA+ GA VV+A N +AA EL EE +G + A+
Sbjct: 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQEL----LEEIKEEG--GDAIAV 60
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
+ D+ S + V E + G + +L+NNAGI + G + + ++ + VN L
Sbjct: 61 KADVSSEEDVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVML 120
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
L+ P +I+ I+N++S+ +G YS SK A F
Sbjct: 121 LTRYALPYMIKRKSGVIVNISSIWGLIGASCEV---------------LYSASKGAVNAF 165
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
+ L K L A SGI V V+PG + T + +
Sbjct: 166 TKALAKEL-APSGIRVNAVAPGAIDTEMWSSFSE 198
|
Length = 247 |
| >gnl|CDD|187670 cd09810, LPOR_like_SDR_c_like, light-dependent protochlorophyllide reductase (LPOR)-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 2e-28
Identities = 71/258 (27%), Positives = 110/258 (42%), Gaps = 43/258 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLN-IEA 124
T ++TG++SG+G A+ LA G HVVMA R+ A + Q+ G+P +
Sbjct: 3 TVVITGASSGLGLAAAKALARRGEWHVVMACRDFLKAEQAAQE-------VGMPKDSYSV 55
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQ-KFSKDGYEEHMQVNHLAP 183
+ DL SLDSV +F + + PL L+ NA ++ + +F+ DG+E + VNHL
Sbjct: 56 LHCDLASLDSVRQFVDNFRRTGRPLDALVCNAAVYLPTAKEPRFTADGFELTVGVNHLGH 115
Query: 184 ALLSILLFPSLIRGS--PSRIINVNSVMH------------------------YVGFVDT 217
LL+ LL L R RI+ V S+ H GF
Sbjct: 116 FLLTNLLLEDLQRSENASPRIVIVGSITHNPNTLAGNVPPRATLGDLEGLAGGLKGFNSM 175
Query: 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPG-IVSTNVARD 276
D G + Y SK+ + + L +RL E+GI + PG I T + R+
Sbjct: 176 IDGGEFEGAKAYKD------SKVCNMLTTYELHRRLHEETGITFNSLYPGCIAETGLFRE 229
Query: 277 LPKIVQAAYHLIPYFIFN 294
+ + + +I
Sbjct: 230 HYPLFRTLFPPFQKYITK 247
|
Classical SDR-like subgroup containing LPOR and related proteins. Protochlorophyllide (Pchlide) reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 311 |
| >gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 2e-27
Identities = 67/225 (29%), Positives = 107/225 (47%), Gaps = 34/225 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG++ GIGR IA +LA GA V + R+ +AA E +++ K L N A+E
Sbjct: 2 VALVTGASRGIGRAIALRLAAEGAKVAVTDRSEEAAAETVEE------IKALGGNAAALE 55
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ ++V E GP+ +L+NNAGI + S++ ++ + VN +
Sbjct: 56 ADVSDREAVEALVEKVEAEFGPVDILVNNAGITRDNLLMRMSEEDWDAVINVNLTGVFNV 115
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG------YSGSKL 240
+ + ++I+ RIIN++SV VG L+G Y+ SK
Sbjct: 116 TQAVIRAMIKRRSGRIINISSV---VG------------------LIGNPGQANYAASKA 154
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
I F+ L K L A GI V V+PG + T++ LP+ V+
Sbjct: 155 GVIGFTKSLAKEL-ASRGITVNAVAPGFIDTDMTDALPEKVKEKI 198
|
This subgroup includes the Escherichai coli K12 BKR, FabG. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 240 |
| >gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 6e-27
Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 30/205 (14%)
Query: 70 VTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
VTG+ GIG EI RQLA+SG V++ R+++ ++K + E L++ +LD
Sbjct: 5 VTGANRGIGFEIVRQLAKSGPGTVILTARDVERGQAAVEKLRAE------GLSVRFHQLD 58
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGI-FSIGEPQKFSKDGYEEHMQVNHLAPALLS 187
+ S+ ++ + G L +L+NNAGI F + +++ E M+ N ++
Sbjct: 59 VTDDASIEAAADFVEEKYGGLDILVNNAGIAFKGFDDSTPTREQARETMKTNFFGTVDVT 118
Query: 188 ILLFPSLIRGSPS-RIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
L P L++ SP+ RI+NV+S + G Y SK A +
Sbjct: 119 QALLP-LLKKSPAGRIVNVSSGL---------------GSLT----SAYGVSKAALNALT 158
Query: 247 SILQKRLPAESGINVVCVSPGIVST 271
IL K L E+GI V PG V T
Sbjct: 159 RILAKELK-ETGIKVNACCPGWVKT 182
|
PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 225 |
| >gnl|CDD|187593 cd05332, 11beta-HSD1_like_SDR_c, 11beta-hydroxysteroid dehydrogenase type 1 (11beta-HSD1)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 3e-26
Identities = 61/206 (29%), Positives = 94/206 (45%), Gaps = 21/206 (10%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
I+TG++SGIG E+A LA GA +V++ R + E+ + E + + LD
Sbjct: 7 IITGASSGIGEELAYHLARLGARLVLSARREERLEEVKSECLELGAPS-----PHVVPLD 61
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ L+ + E G L +LINNAGI S D + M+VN+ P L+
Sbjct: 62 MSDLEDAEQVVEEALKLFGGLDILINNAGISMRSLFHDTSIDVDRKIMEVNYFGPVALTK 121
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
P LI S I+ V+S+ G + + + Y+ SK A F
Sbjct: 122 AALPHLIERSQGSIVVVSSIA---GKIGV----------PFRT--AYAASKHALQGFFDS 166
Query: 249 LQKRLPAESGINVVCVSPGIVSTNVA 274
L+ L +E I+V V PG++ TN+A
Sbjct: 167 LRAEL-SEPNISVTVVCPGLIDTNIA 191
|
Human 11beta_HSD1 catalyzes the NADP(H)-dependent interconversion of cortisone and cortisol. This subgroup also includes human dehydrogenase/reductase SDR family member 7C (DHRS7C) and DHRS7B. These proteins have the GxxxGxG nucleotide binding motif and S-Y-K catalytic triad characteristic of the SDRs, but have an atypical C-terminal domain that contributes to homodimerization contacts. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase | Back alignment and domain information |
|---|
Score = 99.5 bits (249), Expect = 1e-25
Identities = 35/145 (24%), Positives = 60/145 (41%), Gaps = 13/145 (8%)
Query: 67 TCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKA--ANELIQKWQEEWSGKGLPLNIE 123
T ++TG T G+G +AR LA GA H+V+ R A A EL+ + + +
Sbjct: 2 TVLITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAELVAELEALG------AEVT 55
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAP 183
D+ D++ A LGPL +++NAG+ G ++ + + +E +
Sbjct: 56 VAACDVADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAPKVTGA 115
Query: 184 ALLSILLFPSLIRGSPSRIINVNSV 208
L L + +SV
Sbjct: 116 WNLHELTRDL----DLGAFVLFSSV 136
|
This family contains a wide variety of dehydrogenases. Length = 167 |
| >gnl|CDD|187632 cd05374, 17beta-HSD-like_SDR_c, 17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 63/214 (29%), Positives = 89/214 (41%), Gaps = 41/214 (19%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRN---LKAANELIQKWQEEWSGKGLPLNIEAM 125
++TG +SGIG +A LA G V+ RN L++ EL L N+E +
Sbjct: 4 LITGCSSGIGLALALALAAQGYRVIATARNPDKLESLGEL------------LNDNLEVL 51
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN-----H 180
ELD+ +S+ + R G + VL+NNAG G ++ S + E +VN
Sbjct: 52 ELDVTDEESIKAAVKEVIERFGRIDVLVNNAGYGLFGPLEETSIEEVRELFEVNVFGPLR 111
Query: 181 LAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
+ A L P + + RI+NV+SV V L Y SK
Sbjct: 112 VTRAFL-----PLMRKQGSGRIVNVSSVAGLVPTP---------------FLGPYCASKA 151
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274
A S L+ L A GI V + PG V T A
Sbjct: 152 ALEALSESLRLEL-APFGIKVTIIEPGPVRTGFA 184
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|235627 PRK05854, PRK05854, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-24
Identities = 71/214 (33%), Positives = 105/214 (49%), Gaps = 13/214 (6%)
Query: 63 VNDLT---CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLP 119
V DL+ +VTG++ G+G +AR+LA +GA V++ VRN + + L
Sbjct: 9 VPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLS 68
Query: 120 LNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN 179
L LDL SL SV E P+H+LINNAG+ + E Q + DG+E N
Sbjct: 69 LR----ALDLSSLASVAALGEQLRAEGRPIHLLINNAGVMTPPERQT-TADGFELQFGTN 123
Query: 180 HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
HL L+ L P L+R +R+ + +S+ G ++ +D+N R Y + YS SK
Sbjct: 124 HLGHFALTAHLLP-LLRAGRARVTSQSSIAARRGAINWDDLNW---ERSYAGMRAYSQSK 179
Query: 240 LAQIKFSSILQKRLPAES-GINVVCVSPGIVSTN 272
+A F+ L +R A GI PG+ TN
Sbjct: 180 IAVGLFALELDRRSRAAGWGITSNLAHPGVAPTN 213
|
Length = 313 |
| >gnl|CDD|235546 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 98.7 bits (247), Expect = 1e-24
Identities = 66/222 (29%), Positives = 97/222 (43%), Gaps = 23/222 (10%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG++ GIGR IA +LA GA VV+ N +AA L E G + D
Sbjct: 9 LVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL----AAELRAAG--GEARVLVFD 62
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ +V EA G L +L+NNAGI + S++ ++ + VN +
Sbjct: 63 VSDEAAVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVR 122
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
P +I+ RI+N++S VSG YS +K I F+
Sbjct: 123 AALPPMIKARYGRIVNISS---------------VSGVTGNPGQTNYSAAKAGVIGFTKA 167
Query: 249 LQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY-HLIP 289
L L A GI V V+PG + T++ LP+ V+A IP
Sbjct: 168 LALEL-ASRGITVNAVAPGFIDTDMTEGLPEEVKAEILKEIP 208
|
Length = 246 |
| >gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 3e-24
Identities = 78/255 (30%), Positives = 114/255 (44%), Gaps = 45/255 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPL-NIEAM 125
T I+TG++SG+G A+ LA+ G HV+MA RNLK A Q+ G+P + +
Sbjct: 8 TVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQEL-------GIPPDSYTII 60
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHLAP 183
+DL LDSV RF + + PL L+ NA ++ + EP + S GYE M NHL
Sbjct: 61 HIDLGDLDSVRRFVDDFRALGKPLDALVCNAAVYMPLLKEPLR-SPQGYELSMATNHLGH 119
Query: 184 ALLSILLFPSLIRGSPS---RIINVNSVMH-----------------------YVGFVDT 217
LL LL L + SP+ R++ + +V GF
Sbjct: 120 FLLCNLLLEDL-KKSPAPDPRLVILGTVTANPKELGGKIPIPAPADLGDLSGFEAGFKAP 178
Query: 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVS-TNVARD 276
M G +K+ Y SKL + L +R +GI + PG V+ T + R+
Sbjct: 179 ISM--ADG-KKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTPLFRN 235
Query: 277 LPKIVQAAYHLIPYF 291
P + Q L P+F
Sbjct: 236 TPPLFQK---LFPWF 247
|
Length = 322 |
| >gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 4e-24
Identities = 62/223 (27%), Positives = 92/223 (41%), Gaps = 25/223 (11%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL 129
VTG+ GIGR IA +LA GA V++ A + + A ++D+
Sbjct: 11 VTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG------GKARARQVDV 64
Query: 130 LSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSIL 189
++ A G L +L+ NAGIF + + + +E + VN LL+
Sbjct: 65 RDRAALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQA 124
Query: 190 LFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRK-YTSLMGYSGSKLAQIKFSSI 248
P+LIR RI+ +S V+G R Y L Y+ SK + F+
Sbjct: 125 ALPALIRAGGGRIVLTSS---------------VAGPRVGYPGLAHYAASKAGLVGFTRA 169
Query: 249 LQKRLPAESGINVVCVSPGIVSTNVARDLP--KIVQAAYHLIP 289
L L A I V V PG V T +A +L + +A IP
Sbjct: 170 LALEL-AARNITVNSVHPGGVDTPMAGNLGDAQWAEAIAAAIP 211
|
Length = 251 |
| >gnl|CDD|237218 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 1e-23
Identities = 61/227 (26%), Positives = 101/227 (44%), Gaps = 32/227 (14%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+ G+GR IA +LA +GA VV+ R+ + A E + E G +A++ D
Sbjct: 10 LVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAE---ELVEAVEALG--RRAQAVQAD 64
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN-----HLAP 183
+ ++ A R G + +L+NNAGIF S D ++E + VN HL
Sbjct: 65 VTDKAALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLR 124
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
A++ P + + RI+N++SV + G + Y+ +K +
Sbjct: 125 AVV-----PPMRKQRGGRIVNISSV------------AGLPGWPGRS---NYAAAKAGLV 164
Query: 244 KFSSILQKRLPAESGINVVCVSPG-IVSTNVARDLPKIVQAAYHLIP 289
+ L + L AE GI V V+PG I + + + +A P
Sbjct: 165 GLTKALAREL-AEYGITVNMVAPGDIDTDMKEATIEEAREAKDAETP 210
|
Length = 249 |
| >gnl|CDD|235500 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 1e-23
Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 21/217 (9%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG++ GIGR IA +LA GA+VV+ + +A E + GK L A++ D
Sbjct: 9 LVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKAL-----AVQGD 63
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ +SV R + G + +L+NNAGI + ++ ++ + N L+
Sbjct: 64 VSDAESVERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTK 123
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
+ +++ RIIN++SV+ +G Y+ SK I F+
Sbjct: 124 AVARPMMKQRSGRIINISSVVGLMGNP---------------GQANYAASKAGVIGFTKS 168
Query: 249 LQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
L + L A GI V V+PG + T++ LP+ V+ A
Sbjct: 169 LAREL-ASRGITVNAVAPGFIETDMTDALPEDVKEAI 204
|
Length = 248 |
| >gnl|CDD|226674 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 3e-23
Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 36/215 (16%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
+ ++TG++SGIG AR LAE+GA VV+A R + L + G L L
Sbjct: 4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA---GAALAL-- 58
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVN-- 179
LD+ +V EA G + +L+NNAG+ ++G+P + D ++ + N
Sbjct: 59 ---ALDVTDRAAVEAAIEALPEEFGRIDILVNNAGL-ALGDPLDEADLDDWDRMIDTNVK 114
Query: 180 ---HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYS 236
+ A+L P ++ IIN+ S ++GR Y Y
Sbjct: 115 GLLNGTRAVL-----PGMVERKSGHIINLGS---------------IAGRYPYPGGAVYG 154
Query: 237 GSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
+K A FS L++ L A +GI V +SPG+V T
Sbjct: 155 ATKAAVRAFSLGLRQEL-AGTGIRVTVISPGLVET 188
|
Length = 246 |
| >gnl|CDD|187590 cd05329, TR_SDR_c, tropinone reductase-I and II (TR-1, and TR-II)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 1e-22
Identities = 59/215 (27%), Positives = 89/215 (41%), Gaps = 41/215 (19%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTG T GIG I +LA GA V RN K +E + +W+E KG +E
Sbjct: 8 TALVTGGTKGIGYAIVEELAGLGAEVYTCARNQKELDECLTEWRE----KG--FKVEGSV 61
Query: 127 LDLLS-------LDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN 179
D+ S +D+V G L++L+NNAG E + ++++ Y M N
Sbjct: 62 CDVSSRSERQELMDTVASHFG------GKLNILVNNAGTNIRKEAKDYTEEDYSLIMSTN 115
Query: 180 HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
A LS L P L I+ ++SV G + + G +
Sbjct: 116 FEAAYHLSRLAHPLLKASGNGNIVFISSV---AGVIAV----------PSGAPYGATKGA 162
Query: 240 LAQIKFSSILQKRLP---AESGINVVCVSPGIVST 271
L Q L + L A+ I V V+P +++T
Sbjct: 163 LNQ------LTRSLACEWAKDNIRVNAVAPWVIAT 191
|
This subgroup includes TR-I and TR-II; these proteins are members of the SDR family. TRs catalyze the NADPH-dependent reductions of the 3-carbonyl group of tropinone, to a beta-hydroxyl group. TR-I and TR-II produce different stereoisomers from tropinone, TR-I produces tropine (3alpha-hydroxytropane), and TR-II, produces pseudotropine (sigma-tropine, 3beta-hydroxytropane). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 251 |
| >gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase sniffer-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 1e-22
Identities = 67/217 (30%), Positives = 95/217 (43%), Gaps = 30/217 (13%)
Query: 69 IVTGSTSGIGREIARQLAESG-AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMEL 127
++TG++ GIG E+ RQL G V+ R+ AA EL + +EL
Sbjct: 2 LITGASRGIGLELVRQLLARGNNTVIATCRDPSAATELAAL-------GASHSRLHILEL 54
Query: 128 DLLSL--DSVVRFSEAWNGRLG--PLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLA 182
D+ +S EA RLG L VLINNAGI P + + E QVN L
Sbjct: 55 DVTDEIAESA----EAVAERLGDAGLDVLINNAGILHSYGPASEVDSEDLLEVFQVNVLG 110
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
P LL+ P L++G+ ++IIN++S + + N G Y SK A
Sbjct: 111 PLLLTQAFLPLLLKGARAKIINISSRV------GSIGDNTSGG------WYSYRASKAAL 158
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
+ L L + GI VV + PG V T++ K
Sbjct: 159 NMLTKSLAVELKRD-GITVVSLHPGWVRTDMGGPFAK 194
|
Sniffer is an NADPH-dependent carbonyl reductase of the classical SDR family. Studies in Drosophila melanogaster implicate Sniffer in the prevention of neurodegeneration due to aging and oxidative-stress. This subgroup also includes Rhodococcus sp. AD45 IsoH, which is an NAD-dependent 1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase involved in isoprene metabolism, Aspergillus nidulans StcE encoded by a gene which is part of a proposed sterigmatocystin biosynthesis gene cluster, Bacillus circulans SANK 72073 BtrF encoded by a gene found in the butirosin biosynthesis gene cluster, and Aspergillus parasiticus nor-1 involved in the biosynthesis of aflatoxins. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 233 |
| >gnl|CDD|187628 cd05370, SDR_c2, classical (c) SDR, subgroup 2 | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 4e-22
Identities = 58/226 (25%), Positives = 96/226 (42%), Gaps = 30/226 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T ++TG TSGIG +AR+ E+G V++ R E + + ++E NI +
Sbjct: 7 TVLITGGTSGIGLALARKFLEAGNTVIITGRR----EERLAEAKKELP------NIHTIV 56
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI---FSIGEPQKFSKDGYEEHMQVNHLAP 183
LD+ +SV +EA L +LINNAGI + +P D + + N + P
Sbjct: 57 LDVGDAESVEALAEALLSEYPNLDILINNAGIQRPIDLRDPASDL-DKADTEIDTNLIGP 115
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
L P L + + I+NV+S + FV V Y +K A
Sbjct: 116 IRLIKAFLPHLKKQPEATIVNVSSGL---AFVPMAANPV------------YCATKAALH 160
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIP 289
++ L+ +L ++G+ VV + P V T + + +P
Sbjct: 161 SYTLALRHQL-KDTGVEVVEIVPPAVDTELHEERRNPDGGTPRKMP 205
|
Short-chain dehydrogenases/reductases (SDRs, aka Tyrosine-dependent oxidoreductases) are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 228 |
| >gnl|CDD|233590 TIGR01830, 3oxo_ACP_reduc, 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 1e-20
Identities = 61/224 (27%), Positives = 100/224 (44%), Gaps = 33/224 (14%)
Query: 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMEL 127
+VTG++ GIGR IA +LA+ GA V++ R+ + E + + + + K L +
Sbjct: 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKAL-----GVVC 55
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLS 187
D+ + V E LGP+ +L+NNAGI + ++ ++ + N L+
Sbjct: 56 DVSDREDVKAVVEEIEEELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLT 115
Query: 188 ILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG------YSGSKLA 241
+ +I+ RIIN++SV VG LMG Y+ SK
Sbjct: 116 QAVLRIMIKQRSGRIINISSV---VG------------------LMGNAGQANYAASKAG 154
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
I F+ L K L A I V V+PG + T++ L + V+
Sbjct: 155 VIGFTKSLAKEL-ASRNITVNAVAPGFIDTDMTDKLSEKVKKKI 197
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|235975 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 2e-20
Identities = 57/215 (26%), Positives = 83/215 (38%), Gaps = 24/215 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG++SGIG IAR+ A GA VV+ RN +AA + E G + + A
Sbjct: 7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA----AEILAGGRAIAVAA-- 60
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
D+ V A R G + +L+NNAG P + ++ VN +P L
Sbjct: 61 -DVSDEADVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYL 119
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ P++ I+NV S + R Y+ SK A I
Sbjct: 120 WTQAAVPAMRGEGGGAIVNVAST------------AGLRPRPGLGW---YNASKGAVITL 164
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI 280
+ L L I V V+P +V T +
Sbjct: 165 TKALAAEL-GPDKIRVNAVAPVVVETGLLEAFMGE 198
|
Length = 251 |
| >gnl|CDD|187605 cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 3e-20
Identities = 52/208 (25%), Positives = 92/208 (44%), Gaps = 22/208 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG++ GIG IA LAE+GA++V+ RN + A E Q ++E + A
Sbjct: 7 VALVTGASRGIGFGIASGLAEAGANIVINSRNEEKAEEAQQLIEKE------GVEATAFT 60
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ +++ EA G + +L+NNAGI ++F + + + + VN +
Sbjct: 61 CDVSDEEAIKAAVEAIEEDFGKIDILVNNAGIIRRHPAEEFPEAEWRDVIDVNLNGVFFV 120
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
S + +I+ +IIN+ S++ +G + Y+ SK +
Sbjct: 121 SQAVARHMIKQGHGKIINICSLLSELGGP---------------PVPAYAASKGGVAGLT 165
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVA 274
L A GI V ++PG +T +
Sbjct: 166 KALATEW-ARHGIQVNAIAPGYFATEMT 192
|
Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 248 |
| >gnl|CDD|235726 PRK06181, PRK06181, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 6e-20
Identities = 62/209 (29%), Positives = 96/209 (45%), Gaps = 30/209 (14%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWS-GKGLPLNIEAMEL 127
I+TG++ GIGR +A +LA +GA +V+A RN L Q+ + +P
Sbjct: 5 IITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVP-------T 57
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG-YEEHMQVNHLAPALL 186
D+ ++ R EA R G + +L+NNAGI + + +E M+VN+L
Sbjct: 58 DVSDAEACERLIEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYC 117
Query: 187 SILLFPSLI--RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
+ P L RG +I+ V+S+ G V R GY+ SK A
Sbjct: 118 THAALPHLKASRG---QIVVVSSLAGLTG---------VPTRS------GYAASKHALHG 159
Query: 245 FSSILQKRLPAESGINVVCVSPGIVSTNV 273
F L+ L A+ G+ V V PG V+T++
Sbjct: 160 FFDSLRIEL-ADDGVAVTVVCPGFVATDI 187
|
Length = 263 |
| >gnl|CDD|177654 PLN00015, PLN00015, protochlorophyllide reductase | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 7e-20
Identities = 59/147 (40%), Positives = 82/147 (55%), Gaps = 16/147 (10%)
Query: 69 IVTGSTSGIGREIARQLAESGA-HVVMAVRN-LKAANELIQKWQEEWSGKGLPL-NIEAM 125
I+TG++SG+G A+ LAE+G HVVMA R+ LKA + G+P + M
Sbjct: 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKA--------ERAAKSAGMPKDSYTVM 52
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIF--SIGEPQKFSKDGYEEHMQVNHLAP 183
LDL SLDSV +F + + PL VL+ NA ++ + EP F+ DG+E + NHL
Sbjct: 53 HLDLASLDSVRQFVDNFRRSGRPLDVLVCNAAVYLPTAKEP-TFTADGFELSVGTNHLGH 111
Query: 184 ALLSILLFPSLIRGS-PS-RIINVNSV 208
LLS LL L + PS R+I V S+
Sbjct: 112 FLLSRLLLDDLKKSDYPSKRLIIVGSI 138
|
Length = 308 |
| >gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 8e-20
Identities = 59/209 (28%), Positives = 91/209 (43%), Gaps = 32/209 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+ +VTG++SGIGR A LA+ GA VV A RN A + L E + L L++
Sbjct: 11 SVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRL----AGETGCEPLRLDVG--- 63
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D ++ + + G L+N AGI S+ + +G++ M VN AL+
Sbjct: 64 -DDAAIRAAL-------AAAGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALV 115
Query: 187 SILLFPSLIR-GSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ + ++I G I+NV+S VG D + Y SK A
Sbjct: 116 ARHVARAMIAAGRGGSIVNVSSQAALVGLPD---------------HLAYCASKAALDAI 160
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVA 274
+ +L L GI V V+P + T +A
Sbjct: 161 TRVLCVEL-GPHGIRVNSVNPTVTLTPMA 188
|
Length = 245 |
| >gnl|CDD|211705 TIGR01963, PHB_DH, 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 1e-19
Identities = 58/225 (25%), Positives = 91/225 (40%), Gaps = 25/225 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTG+ SGIG IAR LA +GA+VV+ + A + + G + +
Sbjct: 3 TALVTGAASGIGLAIARALAAAGANVVVNDFGEEGAEAAAKV-AGDAGGS-----VIYLP 56
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ D + A G L +L+NNAGI + ++F + ++ + V +
Sbjct: 57 ADVTKEDEIADMIAAAAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAVMLTSAFHT 116
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
P + + RIIN+ S V + S Y +K I +
Sbjct: 117 IRAALPHMKKQGWGRIINIASAHGLVAS-------------PFKS--AYVAAKHGLIGLT 161
Query: 247 SILQKRLPAESGINVVCVSPGIVSTN-VARDLPKIVQAAYHLIPY 290
+L + AE GI V + PG V T V + + QA IP
Sbjct: 162 KVLALEV-AEHGITVNAICPGYVRTPLVEKQIAD--QAKTRGIPE 203
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. Length = 255 |
| >gnl|CDD|181335 PRK08264, PRK08264, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 3e-19
Identities = 58/220 (26%), Positives = 90/220 (40%), Gaps = 39/220 (17%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAH-VVMAVRNLKAANELIQKWQEEWSGKGLPLN 121
+ +VTG+ GIGR QL GA V A R+ ++ +L +
Sbjct: 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTDLGPR------------- 50
Query: 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYE---EHMQV 178
+ ++LD+ SV +EA + +L+NNAGIF G + + M+
Sbjct: 51 VVPLQLDVTDPASVAAAAEA----ASDVTILVNNAGIFRTGSL--LLEGDEDALRAEMET 104
Query: 179 NHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGS 238
N+ P ++ P L I+NV SV+ +V F +L YS S
Sbjct: 105 NYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNF---------------PNLGTYSAS 149
Query: 239 KLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
K A + L+ L A G V+ V PG + T++A L
Sbjct: 150 KAAAWSLTQALRAEL-APQGTRVLGVHPGPIDTDMAAGLD 188
|
Length = 238 |
| >gnl|CDD|187612 cd05354, SDR_c7, classical (c) SDR, subgroup 7 | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 3e-19
Identities = 57/217 (26%), Positives = 86/217 (39%), Gaps = 37/217 (17%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLN 121
+ D T +VTG+ GIG+ L GA V AVR+ +A L+ K+ +
Sbjct: 1 IKDKTVLVTGANRGIGKAFVESLLAHGAKKVYAAVRDPGSAAHLVAKYGD---------K 51
Query: 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIG---EPQKFSKDGYEEHMQV 178
+ + LD+ +S+ + + V+INNAG+ E + ++ M V
Sbjct: 52 VVPLRLDVTDPESIKAAAAQ----AKDVDVVINNAGVLKPATLLEEGAL--EALKQEMDV 105
Query: 179 NHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG-YSG 237
N L+ P L I+N+NSV F MG YS
Sbjct: 106 NVFGLLRLAQAFAPVLKANGGGAIVNLNSVASLKNF----------------PAMGTYSA 149
Query: 238 SKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274
SK A + L+ L A G V+ V PG + T +A
Sbjct: 150 SKSAAYSLTQGLRAEL-AAQGTLVLSVHPGPIDTRMA 185
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also an active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 235 |
| >gnl|CDD|183833 PRK12939, PRK12939, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 6e-19
Identities = 60/203 (29%), Positives = 82/203 (40%), Gaps = 22/203 (10%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+ G+G A LAE+GA V A EL + G+ A+ D
Sbjct: 11 LVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA-GGR-----AHAIAAD 64
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
L SV RF +A LG L L+NNAGI + + D ++ M VN L+
Sbjct: 65 LADPASVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLR 124
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
P L RI+N+ S DT L Y SK A I +
Sbjct: 125 AALPHLRDSGRGRIVNLAS--------DTALW-------GAPKLGAYVASKGAVIGMTRS 169
Query: 249 LQKRLPAESGINVVCVSPGIVST 271
L + L GI V ++PG+ +T
Sbjct: 170 LAREL-GGRGITVNAIAPGLTAT 191
|
Length = 250 |
| >gnl|CDD|237100 PRK12429, PRK12429, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 7e-19
Identities = 56/212 (26%), Positives = 92/212 (43%), Gaps = 28/212 (13%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
+ +VTG+ SGIG EIA LA+ GA VV+A N +AA E G
Sbjct: 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAA----AAAAEALQKAGGKAIG 57
Query: 123 EAMEL-DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHL 181
AM++ D ++++ + ++ G + +L+NNAGI + + F + +++ + +
Sbjct: 58 VAMDVTDEEAINAGIDYAVE---TFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLD 114
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
L + P + RIIN+ SV VG G+ Y S +K
Sbjct: 115 GAFLTTKAALPIMKAQGGGRIINMASVHGLVGSA---------GKAAYVS------AKHG 159
Query: 242 QIKFSSILQKRLPAESGI--NVVCVSPGIVST 271
I + ++ A G+ N +C PG V T
Sbjct: 160 LIGLTKVVALE-GATHGVTVNAIC--PGYVDT 188
|
Length = 258 |
| >gnl|CDD|226476 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 8e-19
Identities = 58/210 (27%), Positives = 90/210 (42%), Gaps = 34/210 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T ++TG SGIG +A++ E G V++ RN + E + I
Sbjct: 7 TILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENP----------EIHTEV 56
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI-----FSIGEPQKFSKDGYEEHMQVNHL 181
D+ DS E L+VLINNAGI + E D E+ + N L
Sbjct: 57 CDVADRDSRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAED---LLDDAEQEIATNLL 113
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
AP L+ LL P L+R + IINV+S + FV V Y +K A
Sbjct: 114 APIRLTALLLPHLLRQPEATIINVSSGL---AFVPMASTPV------------YCATKAA 158
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVST 271
++ L+++L ++ + V+ ++P +V T
Sbjct: 159 IHSYTLALREQL-KDTSVEVIELAPPLVDT 187
|
Length = 245 |
| >gnl|CDD|187602 cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 9e-19
Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 24/210 (11%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGL-PLNIEAMEL 127
+VT ++SGIG IAR LA GA V + RN E +++ E G L + A
Sbjct: 5 LVTAASSGIGLAIARALAREGARVAICARNR----ENLERAASELRAGGAGVLAVVA--- 57
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLS 187
DL + + R E G + +L+NNAG G + + + + E + L+ +
Sbjct: 58 DLTDPEDIDRLVEKAGDAFGRVDILVNNAGGPPPGPFAELTDEDWLEAFDLKLLSVIRIV 117
Query: 188 ILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSS 247
+ P + RI+N++S ++ + + R I
Sbjct: 118 RAVLPGMKERGWGRIVNISS---LTVKEPEPNLVLSNVAR------------AGLIGLVK 162
Query: 248 ILQKRLPAESGINVVCVSPGIVSTNVARDL 277
L + L A G+ V V PG + T R L
Sbjct: 163 TLSREL-APDGVTVNSVLPGYIDTERVRRL 191
|
This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|187622 cd05364, SDR_c11, classical (c) SDR, subgroup 11 | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 1e-18
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 22/215 (10%)
Query: 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLP-LNI 122
+ I+TGS+SGIG A A GA + + R+ E +++ ++ G+ I
Sbjct: 2 SGKVAIITGSSSGIGAGTAILFARLGARLALTGRD----AERLEETRQSCLQAGVSEKKI 57
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA 182
+ DL + R + G L +L+NNAGI + G + + Y++ M +N A
Sbjct: 58 LLVVADLTEEEGQDRIISTTLAKFGRLDILVNNAGILAKGGGEDQDIEEYDKVMNLNLRA 117
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
L+ L P LI+ + I+NV+S V+G R + ++ Y SK A
Sbjct: 118 VIYLTKLAVPHLIK-TKGEIVNVSS---------------VAGGRSFPGVLYYCISKAAL 161
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
+F+ L A G+ V VSPG++ T R +
Sbjct: 162 DQFTRCTALEL-APKGVRVNSVSPGVIVTGFHRRM 195
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 253 |
| >gnl|CDD|181136 PRK07825, PRK07825, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 6e-18
Identities = 56/212 (26%), Positives = 82/212 (38%), Gaps = 28/212 (13%)
Query: 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPL 120
+ +TG GIG AR LA GA V + + A E + L L
Sbjct: 1 DDLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKE---------TAAELGL 51
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNH 180
+ LD+ S F +A LGP+ VL+NNAG+ +G + VN
Sbjct: 52 -VVGGPLDVTDPASFAAFLDAVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNV 110
Query: 181 LAPALLSILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
L S L P ++ RG ++NV S+ G + M Y SK
Sbjct: 111 YGVILGSKLAAPRMVPRGR-GHVVNVASL---AGKIPVPGMAT------------YCASK 154
Query: 240 LAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
A + F+ + L +G++V V P V+T
Sbjct: 155 HAVVGFTDAARLEL-RGTGVHVSVVLPSFVNT 185
|
Length = 273 |
| >gnl|CDD|236372 PRK09072, PRK09072, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 9e-18
Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 30/206 (14%)
Query: 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
D ++TG++ GIG+ +A LA +GA +++ RN + L + P
Sbjct: 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP-------YPGRHR 56
Query: 124 AMELDLLSLD---SVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNH 180
+ DL S +V+ + +G ++VLINNAG+ + + E + +N
Sbjct: 57 WVVADLTSEAGREAVLARAR----EMGGINVLINNAGVNHFALLEDQDPEAIERLLALNL 112
Query: 181 LAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
AP L+ L P L + ++NV S +G+ G Y S Y SK
Sbjct: 113 TAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGY---------PG---YAS---YCASKF 157
Query: 241 AQIKFSSILQKRLPAESGINVVCVSP 266
A FS L++ L A++G+ V+ ++P
Sbjct: 158 ALRGFSEALRREL-ADTGVRVLYLAP 182
|
Length = 263 |
| >gnl|CDD|200089 TIGR01289, LPOR, light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 9e-18
Identities = 69/242 (28%), Positives = 108/242 (44%), Gaps = 58/242 (23%)
Query: 67 TCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL----KAANELIQKWQEEWSGKGLPL- 120
T I+TG++SG+G A+ LA +G HV+MA R+ +AA L G+P
Sbjct: 5 TVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSL-----------GMPKD 53
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIF--SIGEPQKFSKDGYEEHMQV 178
+ M LDL SLDSV +F + + PL L+ NA ++ + EP +F+ DG+E +
Sbjct: 54 SYTIMHLDLGSLDSVRQFVQQFRESGRPLDALVCNAAVYFPTAKEP-RFTADGFELSVGT 112
Query: 179 NHLAPALLSILLFPSLIRGSPS---RIINVNSVMHYVGFVDTEDMNVVSGR--------- 226
NHL LL LL L + SP+ R+I V S+ T + N ++G
Sbjct: 113 NHLGHFLLCNLLLDDL-KNSPNKDKRLIIVGSI--------TGNTNTLAGNVPPKANLGD 163
Query: 227 -----------------RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIV 269
+++ Y SK+ + L +R E+GI + PG +
Sbjct: 164 LSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCI 223
Query: 270 ST 271
+
Sbjct: 224 AD 225
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 314 |
| >gnl|CDD|187598 cd05339, 17beta-HSDXI-like_SDR_c, human 17-beta-hydroxysteroid dehydrogenase XI-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-17
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 23/209 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG SGIGR +A + A+ GA VV+ N K A E + + +
Sbjct: 1 IVLITGGGSGIGRLLALEFAKRGAKVVILDINEKGAEETANN------VRKAGGKVHYYK 54
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ + V ++ +G + +LINNAG+ S + + + E+ +VN LA
Sbjct: 55 CDVSKREEVYEAAKKIKKEVGDVTILINNAGVVSGKKLLELPDEEIEKTFEVNTLAHFWT 114
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ P ++ + I+ + SV + +G L Y SK A + F
Sbjct: 115 TKAFLPDMLERNHGHIVTIASVAGLIS---------PAG------LADYCASKAAAVGFH 159
Query: 247 SILQKRLPAE--SGINVVCVSPGIVSTNV 273
L+ L A GI V P ++T +
Sbjct: 160 ESLRLELKAYGKPGIKTTLVCPYFINTGM 188
|
17-beta-hydroxysteroid dehydrogenases (17betaHSD) are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. 17betaHSD type XI, a classical SDR, preferentially converts 3alpha-adiol to androsterone but not numerous other tested steroids. This subgroup of classical SDRs also includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243 |
| >gnl|CDD|187584 cd05323, ADH_SDR_c_like, insect type alcohol dehydrogenase (ADH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 1e-17
Identities = 51/220 (23%), Positives = 82/220 (37%), Gaps = 34/220 (15%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
I+TG SGIG A+ L + GA V + RN + Q + ++ D
Sbjct: 4 IITGGASGIGLATAKLLLKKGAKVAILDRNENPGA--AAELQAINPK----VKATFVQCD 57
Query: 129 LLSLDSVVR-FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEH-----MQVNHLA 182
+ S + + F +A + G + +LINNAGI + + + G + VN
Sbjct: 58 VTSWEQLAAAFKKAIE-KFGRVDILINNAGIL---DEKSYLFAGKLPPPWEKTIDVNLTG 113
Query: 183 P---ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
L++ G I+N+ SV G YS SK
Sbjct: 114 VINTTYLALHYMDKNKGGKGGVIVNIGSV---AGLY------------PAPQFPVYSASK 158
Query: 240 LAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
+ F+ L L ++G+ V + PG +T + DL
Sbjct: 159 HGVVGFTRSLADLLEYKTGVRVNAICPGFTNTPLLPDLVA 198
|
This subgroup contains insect type ADH, and 15-hydroxyprostaglandin dehydrogenase (15-PGDH) type I; these proteins are classical SDRs. ADH catalyzes the NAD+-dependent oxidation of alcohols to aldehydes/ketones. This subgroup is distinct from the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase/reductase family, and evolved in fruit flies to allow the digestion of fermenting fruit. 15-PGDH catalyzes the NAD-dependent interconversion of (5Z,13E)-(15S)-11alpha,15-dihydroxy-9-oxoprost-13-enoate and (5Z,13E)-11alpha-hydroxy-9,15-dioxoprost-13-enoate, and has a typical SDR glycine-rich NAD-binding motif, which is not fully present in ADH. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|187620 cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-17
Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 33/208 (15%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMEL 127
+VTG++ GIGR IA++LA GA VV+ + AA E++ + + GK + A++
Sbjct: 7 LVTGASRGIGRAIAKRLARDGASVVVNYASSKAAAEEVVAEIEAA-GGKAI-----AVQA 60
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEH----MQVNHLAP 183
D+ V R +A G + +L+NNAG+ +K + EE VN
Sbjct: 61 DVSDPSQVARLFDAAEKAFGGVDILVNNAGV----MLKKPIAETSEEEFDRMFTVNTKGA 116
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
+ L G RIIN++S + + Y + Y+GSK A
Sbjct: 117 FFVLQEAAKRLRDG--GRIINISSSL------------TAAYTPNYGA---YAGSKAAVE 159
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVST 271
F+ +L K L GI V V+PG V T
Sbjct: 160 AFTRVLAKELGGR-GITVNAVAPGPVDT 186
|
1,3,6,8-tetrahydroxynaphthalene reductase (4HNR) of Magnaporthe grisea and the related 1,3,8-trihydroxynaphthalene reductase (3HNR) are typical members of the SDR family containing the canonical glycine rich NAD(P)-binding site and active site tetrad, and function in fungal melanin biosynthesis. This subgroup also includes an SDR from Norway spruce that may function to protect against both biotic and abitoic stress. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|187646 cd08942, RhlG_SDR_c, RhlG and related beta-ketoacyl reductases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 2e-17
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 28/210 (13%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
V +VTG + GIGR IA+ E+GA V+++ R +A + EE S G
Sbjct: 4 VAGKIVLVTGGSRGIGRMIAQGFLEAGARVIISARKAEACADA----AEELSAYG---EC 56
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHL 181
A+ DL S + + R L VL+NNAG + G P + F + G+++ M +N
Sbjct: 57 IAIPADLSSEEGIEALVARVAERSDRLDVLVNNAGA-TWGAPLEAFPESGWDKVMDINVK 115
Query: 182 APALLSILLFPSLIRGS----PSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
+ L+ L P L + P+R+IN+ S+ VVSG Y+ Y
Sbjct: 116 SVFFLTQALLPLLRAAATAENPARVINIGSI----------AGIVVSGLENYS----YGA 161
Query: 238 SKLAQIKFSSILQKRLPAESGINVVCVSPG 267
SK A + + L K L E I V ++PG
Sbjct: 162 SKAAVHQLTRKLAKELAGEH-ITVNAIAPG 190
|
Pseudomonas aeruginosa RhlG is an SDR-family beta-ketoacyl reductase involved in Rhamnolipid biosynthesis. RhlG is similar to but distinct from the FabG family of beta-ketoacyl-acyl carrier protein (ACP) of type II fatty acid synthesis. RhlG and related proteins are classical SDRs, with a canonical active site tetrad and glycine-rich NAD(P)-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|180744 PRK06914, PRK06914, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 2e-17
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 23/206 (11%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
IVTG++SG G +LA+ G V+ +RN + L+ + + L NI+ +LD
Sbjct: 7 IVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLL----SQATQLNLQQNIKVQQLD 62
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ +S+ F +G + +L+NNAG + G ++ + Y + + N ++
Sbjct: 63 VTDQNSIHNFQLVLK-EIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQ 121
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
+ P + + +IIN++S +SGR + L Y SK A FS
Sbjct: 122 AVLPYMRKQKSGKIINISS---------------ISGRVGFPGLSPYVSSKYALEGFSES 166
Query: 249 LQKRLPAES-GINVVCVSPGIVSTNV 273
L RL + GI+V + PG +TN+
Sbjct: 167 L--RLELKPFGIDVALIEPGSYNTNI 190
|
Length = 280 |
| >gnl|CDD|183773 PRK12824, PRK12824, acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 3e-17
Identities = 53/219 (24%), Positives = 90/219 (41%), Gaps = 21/219 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+ GIG IAR+L G V+ + N+ + W EE+ + E
Sbjct: 4 IALVTGAKRGIGSAIARELLNDGYRVIATYF---SGNDCAKDWFEEYGF--TEDQVRLKE 58
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LD+ + GP+ +L+NNAGI ++ S + + + N + +
Sbjct: 59 LDVTDTEECAEALAEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNV 118
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ LF ++ RIIN++S V+G + YS +K I F+
Sbjct: 119 TQPLFAAMCEQGYGRIINISS---------------VNGLKGQFGQTNYSAAKAGMIGFT 163
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
L A GI V C++PG ++T + + V +
Sbjct: 164 KALASEG-ARYGITVNCIAPGYIATPMVEQMGPEVLQSI 201
|
Length = 245 |
| >gnl|CDD|187614 cd05356, 17beta-HSD1_like_SDR_c, 17-beta-hydroxysteroid dehydrogenases (17beta-HSDs) types -1, -3, and -12, -like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 5e-17
Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 28/209 (13%)
Query: 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMEL 127
+VTG+T GIG+ A +LA+ G +V++ R + + + ++ +E++ + A
Sbjct: 4 AVVTGATDGIGKAYAEELAKRGFNVILISRTQEKLDAVAKEIEEKYGVET---KTIAA-- 58
Query: 128 DLLSLDSVV-RFSEAWNGRLGPLHVLINNAGIFSIGEPQKF---SKDGYEEHMQVNHLAP 183
D + D + R + G + +L+NN GI S P+ F +D ++ + VN +A
Sbjct: 59 DFSAGDDIYERIEKELEGL--DIGILVNNVGI-SHSIPEYFLETPEDELQDIINVNVMAT 115
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
++ L+ P +++ I+N++S +G L YS SK
Sbjct: 116 LKMTRLILPGMVKRKKGAIVNISS---------------FAGLIPTPLLATYSASKAFLD 160
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVSTN 272
FS L + GI+V + P +V+T
Sbjct: 161 FFSRALYEEY-KSQGIDVQSLLPYLVATK 188
|
This subgroup includes various 17-beta-hydroxysteroid dehydrogenases and 3-ketoacyl-CoA reductase, these are members of the SDR family, and contain the canonical active site tetrad and glycine-rich NAD-binding motif of the classical SDRs. 3-ketoacyl-CoA reductase (KAR, aka 17beta-HSD type 12, encoded by HSD17B12) acts in fatty acid elongation; 17beta- hydroxysteroid dehydrogenases are isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. 17beta-estradiol dehydrogenase (aka 17beta-HSD type 1, encoded by HSD17B1) converts estrone to estradiol. Estradiol is the predominant female sex hormone. 17beta-HSD type 3 (aka testosterone 17-beta-dehydrogenase 3, encoded by HSD17B3) catalyses the reduction of androstenedione to testosterone, it also accepts estrogens as substrates. This subgroup also contains a putative steroid dehydrogenase let-767 from Caenorhabditis elegans, mutation in which results in hypersensitivity to cholesterol limitation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239 |
| >gnl|CDD|187643 cd08939, KDSR-like_SDR_c, 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 6e-17
Identities = 48/205 (23%), Positives = 90/205 (43%), Gaps = 18/205 (8%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG +SGIG+ +A++L + GA+V++ R+ E +++ + E + G ++ +
Sbjct: 3 HVLITGGSSGIGKALAKELVKEGANVIIVARSESKLEEAVEEIEAEANASGQKVSYISA- 61
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
DL + V + + GP +++N AGI G + + + +E M VN+ +
Sbjct: 62 -DLSDYEEVEQAFAQAVEKGGPPDLVVNCAGISIPGLFEDLTAEEFERGMDVNYFGSLNV 120
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ + P + P I+ V+S VG Y++ Y SK A +
Sbjct: 121 AHAVLPLMKEQRPGHIVFVSSQAALVGIYG------------YSA---YCPSKFALRGLA 165
Query: 247 SILQKRLPAESGINVVCVSPGIVST 271
L++ L I V V P T
Sbjct: 166 ESLRQEL-KPYNIRVSVVYPPDTDT 189
|
These proteins include members identified as KDSR, ribitol type dehydrogenase, and others. The group shows strong conservation of the active site tetrad and glycine rich NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 239 |
| >gnl|CDD|187654 cd08951, DR_C-13_KR_SDR_c_like, daunorubicin C-13 ketoreductase (KR), classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 7e-17
Identities = 58/202 (28%), Positives = 87/202 (43%), Gaps = 22/202 (10%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL 129
+TGS+ G+G AR L G VV+ R+ K A + P + DL
Sbjct: 12 ITGSSDGLGLAAARTLLHQGHEVVLHARSQKRAADAK---------AACPGAAGVLIGDL 62
Query: 130 LSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSIL 189
SL + ++ N +G +I+NAGI S G +K G + VN LAP +L+ L
Sbjct: 63 SSLAETRKLADQVNA-IGRFDAVIHNAGILS-GPNRKTPDTGIPAMVAVNVLAPYVLTAL 120
Query: 190 LFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSIL 249
+ P R+I ++S MH G +D++ R YS SKL + ++ +
Sbjct: 121 IRR------PKRLIYLSSGMHRGGNASLDDID--WFNRGENDSPAYSDSKLHVLTLAAAV 172
Query: 250 QKRLPAESGINVVCVSPGIVST 271
+R S V PG V T
Sbjct: 173 ARRWKDVS---SNAVHPGWVPT 191
|
Daunorubicin is a clinically important therapeutic compound used in some cancer treatments. Daunorubicin C-13 ketoreductase is member of the classical SDR family with a canonical glycine-rich NAD(P)-binding motif, but lacking a complete match to the active site tetrad characteristic of this group. The critical Tyr, plus the Lys and upstream Asn are present, but the catalytic Ser is replaced, generally by Gln. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 260 |
| >gnl|CDD|187640 cd08935, mannonate_red_SDR_c, putative D-mannonate oxidoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 1e-16
Identities = 53/229 (23%), Positives = 93/229 (40%), Gaps = 36/229 (15%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
+ + ++TG T +G +AR LA++GA V RN + +++ +E + G + +
Sbjct: 3 LKNKVAVITGGTGVLGGAMARALAQAGAKVAALGRNQEKGDKVA---KEITALGGRAIAL 59
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG-----------IFSIGEPQKF---S 168
A D+L S+ R E + G + +LIN AG + Q F
Sbjct: 60 AA---DVLDRASLERAREEIVAQFGTVDILINGAGGNHPDATTDPEHYEPETEQNFFDLD 116
Query: 169 KDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRK 228
++G+E +N L S + ++ IIN++S+ +
Sbjct: 117 EEGWEFVFDLNLNGSFLPSQVFGKDMLEQKGGSIINISSMNAFSPL-------------- 162
Query: 229 YTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
T + YS +K A F+ L A +G+ V ++PG T R L
Sbjct: 163 -TKVPAYSAAKAAVSNFTQWLAVEF-ATTGVRVNAIAPGFFVTPQNRKL 209
|
D-mannonate oxidoreductase catalyzes the NAD-dependent interconversion of D-mannonate and D-fructuronate. This subgroup includes Bacillus subtitils UxuB/YjmF, a putative D-mannonate oxidoreductase; the B. subtilis UxuB gene is part of a putative ten-gene operon (the Yjm operon) involved in hexuronate catabolism. Escherichia coli UxuB does not belong to this subgroup. This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 271 |
| >gnl|CDD|187604 cd05346, SDR_c5, classical (c) SDR, subgroup 5 | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-16
Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 24/207 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T ++TG++SGIG AR+ A++GA +++ R + EL + ++ K LPL +
Sbjct: 2 TVLITGASSGIGEATARRFAKAGAKLILTGRRAERLQELADELGAKFPVKVLPL-----Q 56
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP--QKFSKDGYEEHMQVNHLAPA 184
LD+ +S+ E + +L+NNAG ++G Q+ + +E + N
Sbjct: 57 LDVSDRESIEAALENLPEEFRDIDILVNNAG-LALGLDPAQEADLEDWETMIDTNVKGLL 115
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
++ L+ P +I + IIN+ S ++GR Y Y +K A +
Sbjct: 116 NVTRLILPIMIARNQGHIINLGS---------------IAGRYPYAGGNVYCATKAAVRQ 160
Query: 245 FSSILQKRLPAESGINVVCVSPGIVST 271
FS L+K L +GI V + PG+V T
Sbjct: 161 FSLNLRKDL-IGTGIRVTNIEPGLVET 186
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 4e-16
Identities = 57/211 (27%), Positives = 95/211 (45%), Gaps = 26/211 (12%)
Query: 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGK---GLPL 120
+ T ++TG++ GIG IAR+ GA V++ R+ A + + EE+ + GL
Sbjct: 8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAA 67
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNH 180
++ E LD V + W+G LH+L+NNAG +++D + + N
Sbjct: 68 DVSDDEDRRAILDWV---EDHWDG----LHILVNNAGGNIRKAAIDYTEDEWRGIFETNL 120
Query: 181 LAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
+ LS P L + + S I+N+ SV G V SG + G + + L
Sbjct: 121 FSAFELSRYAHPLLKQHASSAIVNIGSV---SGLTH-----VRSG-----APYGMTKAAL 167
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVST 271
Q+ + ++ AE GI V V+P + T
Sbjct: 168 LQMTRNLAVEW---AEDGIRVNAVAPWYIRT 195
|
Length = 257 |
| >gnl|CDD|181298 PRK08219, PRK08219, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 5e-16
Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 33/211 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T ++TG++ GIG IAR+LA +++ R + +EL LP
Sbjct: 5 TALITGASRGIGAAIARELAP-THTLLLGGRPAERLDELAA---------ELP-GATPFP 53
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+DL +++ A +LG L VL++NAG+ +G + + D + ++VN +APA L
Sbjct: 54 VDLTDPEAI----AAAVEQLGRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAEL 109
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ LL P+L R + ++ +NS G +G R Y+ SK A +
Sbjct: 110 TRLLLPAL-RAAHGHVVFINS-----G----------AGLRANPGWGSYAASKFALRALA 153
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDL 277
L R + V V PG T++ R L
Sbjct: 154 DAL--REEEPGNVRVTSVHPGRTDTDMQRGL 182
|
Length = 227 |
| >gnl|CDD|235925 PRK07067, PRK07067, sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 5e-16
Identities = 56/209 (26%), Positives = 84/209 (40%), Gaps = 32/209 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG+ SGIG +A + GA VV+A A + + A+
Sbjct: 8 VALLTGAASGIGEAVAERYLAEGARVVIADIKPARARL---------AALEIGPAAIAVS 58
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LD+ DS+ R A R G + +L NNA +F + S+D Y+ VN L
Sbjct: 59 LDVTRQDSIDRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFL 118
Query: 187 SILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ ++ +G +IIN M +GRR + Y +K A I
Sbjct: 119 MQAVARHMVEQGRGGKIIN---------------MASQAGRRGEALVSHYCATKAAVI-- 161
Query: 246 SSILQK---RLPAESGINVVCVSPGIVST 271
S Q L GINV ++PG+V T
Sbjct: 162 -SYTQSAALAL-IRHGINVNAIAPGVVDT 188
|
Length = 257 |
| >gnl|CDD|187668 cd09808, DHRS-12_like_SDR_c-like, human dehydrogenase/reductase SDR family member (DHRS)-12/FLJ13639-like, classical (c)-like SDRs | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 7e-16
Identities = 60/211 (28%), Positives = 100/211 (47%), Gaps = 12/211 (5%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
++TG+ SGIG+ A +A+ G V M RN A E ++ + E + + L+I +D
Sbjct: 5 LITGANSGIGKAAALAIAKRGGTVHMVCRNQTRAEEARKEIETESGNQNIFLHI----VD 60
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ V F E + LHVLINNAG + ++ ++DG E++ N L +L+
Sbjct: 61 MSDPKQVWEFVEEFKEEGKKLHVLINNAG--CMVNKRELTEDGLEKNFATNTLGTYILTT 118
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
L P L + R+I V+S V ++T ++ S R + M Y+ +K Q+ +
Sbjct: 119 HLIPVLEKEEDPRVITVSSGGMLVQKLNTNNLQ--SERTAFDGTMVYAQNKRQQVIMTEQ 176
Query: 249 LQKRLPAESGINVVCVSPGIVST-NVARDLP 278
K+ P I+ + PG T V +P
Sbjct: 177 WAKKHPE---IHFSVMHPGWADTPAVRNSMP 204
|
Classical SDR-like subgroup containing human DHRS-12/FLJ13639, the 36K protein of zebrafish CNS myelin, and related proteins. DHRS-12/FLJ13639 is expressed in neurons and oligodendrocytes in the human cerebral cortex. Proteins in this subgroup share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 255 |
| >gnl|CDD|183718 PRK12746, PRK12746, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 1e-15
Identities = 71/222 (31%), Positives = 105/222 (47%), Gaps = 31/222 (13%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAV-RNLKAANELIQKWQEEWSGKGLPLN 121
++ +VTG++ GIGR IA +LA GA V + RN +AA+E I++ + S G
Sbjct: 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIE---SNGGKAFL 60
Query: 122 IEAMELDLLSLDSVVRFSEAWNGRL------GPLHVLINNAGIFSIGEPQKFSKDGYEEH 175
IEA DL S+D V + E L + +L+NNAGI + G + +++ ++E
Sbjct: 61 IEA---DLNSIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEI 117
Query: 176 MQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGY 235
M VN AP L P L+R R+IN++S +GF T + Y
Sbjct: 118 MAVNIKAPFFLIQQTLP-LLRAE-GRVINISSAEVRLGF---------------TGSIAY 160
Query: 236 SGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
SK A + L K L E GI V + PG T++ L
Sbjct: 161 GLSKGALNTMTLPLAKHL-GERGITVNTIMPGYTKTDINAKL 201
|
Length = 254 |
| >gnl|CDD|235631 PRK05866, PRK05866, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-15
Identities = 55/160 (34%), Positives = 74/160 (46%), Gaps = 14/160 (8%)
Query: 54 LQNPLPLPPVNDLT---CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQ 110
L N P PV DLT ++TG++SGIG A Q A GA VV R +L+
Sbjct: 27 LINRPPRQPV-DLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARR----EDLLDAVA 81
Query: 111 EEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKD 170
+ + G + A+ DL LD+V R+G + +LINNAG SI P S D
Sbjct: 82 DRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRIGGVDILINNAG-RSIRRPLAESLD 138
Query: 171 ---GYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNS 207
E M +N+ AP L L P ++ IINV +
Sbjct: 139 RWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVAT 178
|
Length = 293 |
| >gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 5e-15
Identities = 59/212 (27%), Positives = 95/212 (44%), Gaps = 37/212 (17%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+ GIGR + LA++GA VV R + E G IE + +D
Sbjct: 11 LVTGAGKGIGRATVKALAKAGARVVAVSRT----QADLDSLVRECPG------IEPVCVD 60
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
L D+ E G +GP+ +L+NNA + + + +K+ ++ VN A +S
Sbjct: 61 LSDWDAT----EEALGSVGPVDLLVNNAAVAILQPFLEVTKEAFDRSFDVNVRAVIHVSQ 116
Query: 189 LLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSS 247
++ +I RG P I+NV+S + +R T+ Y +K A
Sbjct: 117 IVARGMIARGVPGSIVNVSS---------------QASQRALTNHTVYCSTKAAL----D 157
Query: 248 ILQKRLPAESG---INVVCVSPGIVSTNVARD 276
+L K + E G I V V+P +V T++ RD
Sbjct: 158 MLTKVMALELGPHKIRVNSVNPTVVMTDMGRD 189
|
Members of this subgroup include proteins identified as L-xylulose reductase (XR) and carbonyl reductase; they are members of the SDR family. XR, catalyzes the NADP-dependent reduction of L-xyulose and other sugars. Tetrameric mouse carbonyl reductase is involved in the metabolism of biogenic and xenobiotic carbonyl compounds. This subgroup also includes tetrameric chicken liver D-erythrulose reductase, which catalyzes the reduction of D-erythrulose to D-threitol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 244 |
| >gnl|CDD|187603 cd05345, BKR_3_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 3, classical (c) SDR | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 5e-15
Identities = 59/229 (25%), Positives = 90/229 (39%), Gaps = 31/229 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG+ SG G IAR+ A+ GA VV+A N A E + A++
Sbjct: 7 VAIVTGAGSGFGEGIARRFAQEGARVVIADINADGA---------ERVAADIGEAAIAIQ 57
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
D+ V EA + G L +L+NNAGI +P + ++ ++ VN + L
Sbjct: 58 ADVTKRADVEAMVEAALSKFGRLDILVNNAGITHRNKPMLEVDEEEFDRVFAVNVKSIYL 117
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ L P + IIN+ S +G R L Y+ SK +
Sbjct: 118 SAQALVPHMEEQGGGVIINIAS---------------TAGLRPRPGLTWYNASKGWVVTA 162
Query: 246 SSILQKRLPAESGINVVCVSP-----GIVSTNVARDLPKIVQAAYHLIP 289
+ + L A I V C+ P ++S + D P+ IP
Sbjct: 163 TKAMAVEL-APRNIRVNCLCPVAGETPLLSMFMGEDTPENRAKFRATIP 210
|
This subgroup includes the putative Brucella melitensis biovar Abortus 2308 BKR, FabG, Mesorhizobium loti MAFF303099 FabG, and other classical SDRs. BKR, a member of the SDR family, catalyzes the NADPH-dependent reduction of acyl carrier protein in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of 4 elongation steps, which are repeated to extend the fatty acid chain thru the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I Fas utilizes one or 2 multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 248 |
| >gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 6e-15
Identities = 62/219 (28%), Positives = 87/219 (39%), Gaps = 36/219 (16%)
Query: 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLP 119
L P++ L +VTG SGIGR IA AE+GA V + + A LP
Sbjct: 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT---------AARLP 56
Query: 120 -LNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQ-KFSKDGYEEHMQ 177
+ A D+ V R + R G L VL+NNAGI + + + +E+ +
Sbjct: 57 GAKVTATVADVADPAQVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLA 116
Query: 178 VN-----HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSL 232
VN + A A + +L G II ++S V+GR Y
Sbjct: 117 VNLNGQFYFARAAVPLL----KASGHGGVIIALSS---------------VAGRLGYPGR 157
Query: 233 MGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
Y+ SK A + L L GI V + PGIV
Sbjct: 158 TPYAASKWAVVGLVKSLAIEL-GPLGIRVNAILPGIVRG 195
|
Length = 264 |
| >gnl|CDD|213929 TIGR04316, dhbA_paeA, 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 7e-15
Identities = 59/209 (28%), Positives = 85/209 (40%), Gaps = 22/209 (10%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+ GIG +AR LAE+GA V RN + EL+ + G P +LD
Sbjct: 2 LVTGAAQGIGYAVARALAEAGARVAAVDRNFEQLLELV----ADLRRYGYPF--ATYKLD 55
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ +V + GP+ VL+N AGI +G S + ++ VN +S
Sbjct: 56 VADSAAVDEVVQRLEREYGPIDVLVNVAGILRLGAIDSLSDEDWQATFAVNTFGVFNVSQ 115
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
+ P + R I+ V S N + R + Y+ SK A +
Sbjct: 116 AVSPRMKRRRSGAIVTVGS-------------NAANVPR--MGMAAYAASKAALTMLTKC 160
Query: 249 LQKRLPAESGINVVCVSPGIVSTNVARDL 277
L L A GI VSPG T + R L
Sbjct: 161 LGLEL-APYGIRCNVVSPGSTDTEMQRQL 188
|
Members of this family are 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase (EC 1.3.1.28), the third enzyme in the biosynthesis of 2,3-dihydroxybenzoic acid (DHB) from chorismate. The first two enzymes are isochorismate synthase (EC 5.4.4.2) and isochorismatase (EC 3.3.2.1). Synthesis is often followed by adenylation by the enzyme DHBA-AMP ligase (EC 2.7.7.58) to activate (DHB) for a non-ribosomal peptide synthetase. Length = 250 |
| >gnl|CDD|236074 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-14
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 24/212 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG+ GIGR +A LA+ G +V + R + ++ EE G+ + I
Sbjct: 9 NALITGAGRGIGRAVAIALAKEGVNVGLLARTEEN----LKAVAEEVEAYGVKVVIATA- 63
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ + V E LG + +LINNAGI G+ + +E+ +QVN +
Sbjct: 64 -DVSDYEEVTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYA 122
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ + PS+I IIN++S +G++ YS SK + +
Sbjct: 123 TRAVLPSMIERQSGDIINISS---------------TAGQKGAAVTSAYSASKFGVLGLT 167
Query: 247 -SILQKRLPAESGINVVCVSPGIVSTNVARDL 277
S++Q+ I V ++P V+T++A DL
Sbjct: 168 ESLMQEVRK--HNIRVTALTPSTVATDMAVDL 197
|
Length = 239 |
| >gnl|CDD|181305 PRK08226, PRK08226, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 1e-14
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 32/213 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T ++TG+ GIG IAR A GA++++ + I+K +E G+G A+
Sbjct: 8 TALITGALQGIGEGIARVFARHGANLILL-----DISPEIEKLADELCGRG--HRCTAVV 60
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN-----HL 181
D+ SV + + G + +L+NNAG+ +G S + + H+ +N ++
Sbjct: 61 ADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNV 120
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
A+L P +I RI+ ++SV T DM G Y+ +K A
Sbjct: 121 TKAVL-----PEMIARKDGRIVMMSSV--------TGDMVADPGE------TAYALTKAA 161
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274
+ + L A+SGI V + PG V T +A
Sbjct: 162 IVGLTKSLAVEY-AQSGIRVNAICPGYVRTPMA 193
|
Length = 263 |
| >gnl|CDD|187618 cd05360, SDR_c3, classical (c) SDR, subgroup 3 | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-14
Identities = 57/205 (27%), Positives = 92/205 (44%), Gaps = 24/205 (11%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
++TG++SGIGR A AE GA VV+A R+ +A +EL ++ E G+ + A+ D
Sbjct: 4 VITGASSGIGRATALAFAERGAKVVLAARSAEALHELARE-VRELGGEAI-----AVVAD 57
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ V R ++ R G + +NNAG+ G + + + + VN+L ++
Sbjct: 58 VADAAQVERAADTAVERFGRIDTWVNNAGVAVFGRFEDVTPEEFRRVFDVNYLGHVYGTL 117
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG-YSGSKLAQIKFSS 247
P L R +INV S++ Y L YS SK A F+
Sbjct: 118 AALPHLRRRGGGALINVGSLLGYRS----------------APLQAAYSASKHAVRGFTE 161
Query: 248 ILQKRL-PAESGINVVCVSPGIVST 271
L+ L + I+V V P ++T
Sbjct: 162 SLRAELAHDGAPISVTLVQPTAMNT 186
|
These proteins are members of the classical SDR family, with a canonical active site triad (and also active site Asn) and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 233 |
| >gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 59/217 (27%), Positives = 90/217 (41%), Gaps = 41/217 (18%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANE---LI-QKWQEEWSGKGLPLNIEA 124
+VTG+ SGIGRE A A GA VV + + AA LI A
Sbjct: 319 VVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAH----------A 368
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPA 184
+D+ D++ F+E G +++NNAGI G S + ++ + VN
Sbjct: 369 YRVDVSDADAMEAFAEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVN----- 423
Query: 185 LLSIL----LF-PSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGS 238
L ++ LF ++ RG+ I+NV S + + + Y+ S
Sbjct: 424 LWGVIHGCRLFGRQMVERGTGGHIVNVASA---AAYAPSRSLPA------------YATS 468
Query: 239 KLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275
K A + S L+ L A +GI V + PG V TN+
Sbjct: 469 KAAVLMLSECLRAEL-AAAGIGVTAICPGFVDTNIVA 504
|
Length = 582 |
| >gnl|CDD|187665 cd09805, type2_17beta_HSD-like_SDR_c, human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 2e-14
Identities = 56/236 (23%), Positives = 93/236 (39%), Gaps = 45/236 (19%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAME 126
++TG SG G +A++L G V+ A EL + S + ++
Sbjct: 4 LITGCDSGFGNLLAKKLDSLGFTVLAGCLTKNGPGAKEL----RRVCSD-----RLRTLQ 54
Query: 127 LDLLSLDSVVRFSEAWNGRLGP--LHVLINNAGIFSIGEPQKF-SKDGYEEHMQVNHLAP 183
LD+ + + R ++ +G L L+NNAGI G ++ D Y + M+VN
Sbjct: 55 LDVTKPEQIKRAAQWVKEHVGEKGLWGLVNNAGILGFGGDEELLPMDDYRKCMEVNLFGT 114
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
++ P L+R + R++NV+S+ GR + + Y SK A
Sbjct: 115 VEVTKAFLP-LLRRAKGRVVNVSSMG---------------GRVPFPAGGAYCASKAAVE 158
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVSTNVAR--------------DLPKIVQAAY 285
FS L++ L G+ V + PG T + LP V+ Y
Sbjct: 159 AFSDSLRRELQPW-GVKVSIIEPGNFKTGITGNSELWEKQAKKLWERLPPEVKKDY 213
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical-SDR subgroup includes the human proteins: type 2 17beta-HSD, type 6 17beta-HSD, type 2 11beta-HSD, dehydrogenase/reductase SDR family member 9, short-chain dehydrogenase/reductase family 9C member 7, 3-hydroxybutyrate dehydrogenase type 1, and retinol dehydrogenase 5. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 281 |
| >gnl|CDD|235924 PRK07063, PRK07063, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-14
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+ GIG IAR A GA V +A + A + +G + A+ D
Sbjct: 11 LVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGA----RVLAVPAD 66
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN-----HLAP 183
+ SV A GPL VL+NNAGI +P + + + V+ +
Sbjct: 67 VTDAASVAAAVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCR 126
Query: 184 ALLSILLFPSLI-RGSPSRIINVNSV 208
A+L P ++ RG S I+N+ S
Sbjct: 127 AVL-----PGMVERGRGS-IVNIAST 146
|
Length = 260 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 10/150 (6%)
Query: 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLN 121
P+ ++TG++SGIGR A ++AE+GA V + RN +A +EL+ + +
Sbjct: 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRA------KGGT 421
Query: 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKD---GYEEHMQV 178
A DL +V + G + L+NNAG SI + S D YE M V
Sbjct: 422 AHAYTCDLTDSAAVDHTVKDILAEHGHVDYLVNNAG-RSIRRSVENSTDRFHDYERTMAV 480
Query: 179 NHLAPALLSILLFPSLIRGSPSRIINVNSV 208
N+ L + L P + ++NV+S+
Sbjct: 481 NYFGAVRLILGLLPHMRERRFGHVVNVSSI 510
|
Length = 657 |
| >gnl|CDD|183832 PRK12935, PRK12935, acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 2e-14
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 23/222 (10%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
+N IVTG GIG+ I LA+ GA VV+ + K A E + E +G ++
Sbjct: 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVN---ELGKEG--HDV 58
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA 182
A++ D+ ++ R E G + +L+NNAGI +K +++ +E + VN +
Sbjct: 59 YAVQADVSKVEDANRLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSS 118
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYV-GFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
+ + P + RII+++S++ GF T YS +K
Sbjct: 119 VFNTTSAVLPYITEAEEGRIISISSIIGQAGGFGQTN----------------YSAAKAG 162
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQA 283
+ F+ L L A++ + V + PG + T + ++P+ V+
Sbjct: 163 MLGFTKSLALEL-AKTNVTVNAICPGFIDTEMVAEVPEEVRQ 203
|
Length = 247 |
| >gnl|CDD|187639 cd08934, CAD_SDR_c, clavulanic acid dehydrogenase (CAD), classical (c) SDR | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-14
Identities = 59/206 (28%), Positives = 89/206 (43%), Gaps = 22/206 (10%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG++SGIG AR LA GA V +A R + L + + E GK L L ELD
Sbjct: 7 LVTGASSGIGEATARALAAEGAAVAIAARRVDRLEALADELEAE-GGKALVL-----ELD 60
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ V E LG L +L+NNAGI +G + + + N L +
Sbjct: 61 VTDEQQVDAAVERTVEALGRLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYTTH 120
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
P + + I+N++S V+GR + Y+ +K FS
Sbjct: 121 AALPHHLLRNKGTIVNISS---------------VAGRVAVRNSAVYNATKFGVNAFSEG 165
Query: 249 LQKRLPAESGINVVCVSPGIVSTNVA 274
L++ + E G+ VV + PG V T +
Sbjct: 166 LRQEV-TERGVRVVVIEPGTVDTELR 190
|
CAD catalyzes the NADP-dependent reduction of clavulanate-9-aldehyde to clavulanic acid, a beta-lactamase inhibitor. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 243 |
| >gnl|CDD|236216 PRK08277, PRK08277, D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 4e-14
Identities = 57/231 (24%), Positives = 96/231 (41%), Gaps = 39/231 (16%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
+ ++TG +G +A++LA +GA V + RN + A ++ + + G+ L
Sbjct: 8 LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA-GGEAL---- 62
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG-----------IFSIGEPQK----F 167
A++ D+L +S+ + + GP +LIN AG + EP K
Sbjct: 63 -AVKADVLDKESLEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDL 121
Query: 168 SKDGYEEHMQVNHLAPALLSILLF-PSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226
++G+E +N L LL +F ++ IIN++S MN
Sbjct: 122 DEEGFEFVFDLNLLG-TLLPTQVFAKDMVGRKGGNIINISS------------MN---AF 165
Query: 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
T + YS +K A F+ L A+ GI V ++PG T R L
Sbjct: 166 TPLTKVPAYSAAKAAISNFTQWLAVHF-AKVGIRVNAIAPGFFLTEQNRAL 215
|
Length = 278 |
| >gnl|CDD|187625 cd05367, SPR-like_SDR_c, sepiapterin reductase (SPR)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 8e-14
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 33/212 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESG-AHVVMAV-RNLKAANELIQKWQEEWSGKGLPLNIEA 124
I+TG++ GIGR +A +L + G VV+ + R+ E +Q+ +EE L +
Sbjct: 1 VIILTGASRGIGRALAEELLKRGSPSVVVLLARSE----EPLQELKEELRP---GLRVTT 53
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQK---FSKDGYEEHMQVNHL 181
++ DL V + EA G +LINNAG S+G K D +++ +N
Sbjct: 54 VKADLSDAAGVEQLLEAIRKLDGERDLLINNAG--SLGPVSKIEFIDLDELQKYFDLNLT 111
Query: 182 APALLSILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
+P L+ L + RG ++NV+S + + Y SK
Sbjct: 112 SPVCLTSTLLRAFKKRGLKKTVVNVSS---------------GAAVNPFKGWGLYCSSKA 156
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272
A+ F +L P + V+ +PG+V T+
Sbjct: 157 ARDMFFRVLAAEEP---DVRVLSYAPGVVDTD 185
|
Human SPR, a member of the SDR family, catalyzes the NADP-dependent reduction of sepiaptern to 7,8-dihydrobiopterin (BH2). In addition to SPRs, this subgroup also contains Bacillus cereus yueD, a benzil reductase, which catalyzes the stereospecific reduction of benzil to (S)-benzoin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 241 |
| >gnl|CDD|188169 TIGR01829, AcAcCoA_reduct, acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 8e-14
Identities = 56/221 (25%), Positives = 92/221 (41%), Gaps = 31/221 (14%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG GIG I ++LA+ G V + E W +E L + +E D
Sbjct: 4 LVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAE---AWLQE--QGALGFDFRVVEGD 58
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ S +S LGP+ VL+NNAGI +K + + + + N L S+
Sbjct: 59 VSSFESCKAAVAKVEAELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTN-----LNSV 113
Query: 189 L-----LFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
+ + RIIN++SV N G+ T+ YS +K I
Sbjct: 114 FNVTQPVIDGMRERGWGRIINISSV------------NGQKGQFGQTN---YSAAKAGMI 158
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAA 284
F+ L + A G+ V +SPG ++T++ + + V +
Sbjct: 159 GFTKALAQEG-ATKGVTVNTISPGYIATDMVMAMREDVLNS 198
|
This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. Length = 242 |
| >gnl|CDD|187601 cd05343, Mgc4172-like_SDR_c, human Mgc4172-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 9e-14
Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 39/235 (16%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG++ GIG +AR L + G VV R + + I+ E G P + + D
Sbjct: 10 LVTGASVGIGAAVARALVQHGMKVVGCARRV----DKIEALAAECQSAGYP-TLFPYQCD 64
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSK---DGYEEHMQVNHLAPAL 185
L + + ++ A + + V INNAG + P+ +G++E VN LA ++
Sbjct: 65 LSNEEQILSMFSAIRTQHQGVDVCINNAG---LARPEPLLSGKTEGWKEMFDVNVLALSI 121
Query: 186 LSILLFPSLIRGSPSR--IINVNSVMHYVGFVDTEDMNVVSGRR----KYTSLMGYSGSK 239
+ + S+ + IIN+NS +SG R Y+ +K
Sbjct: 122 CTREAYQSMKERNVDDGHIININS---------------MSGHRVPPVSVFHF--YAATK 164
Query: 240 LAQIKFSSILQKRL-PAESGINVVCVSPGIVSTNVA----RDLPKIVQAAYHLIP 289
A + L++ L A++ I +SPG+V T A + P+ A Y IP
Sbjct: 165 HAVTALTEGLRQELREAKTHIRATSISPGLVETEFAFKLHDNDPEKAAATYESIP 219
|
Human Mgc4172-like proteins, putative SDRs. These proteins are members of the SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|187615 cd05357, PR_SDR_c, pteridine reductase (PR), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-13
Identities = 49/215 (22%), Positives = 68/215 (31%), Gaps = 32/215 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRN-----LKAANELIQKWQEEWSGKGLPLN 121
+VTG+ IGR IA LA G VV+ + +EL +
Sbjct: 2 VALVTGAAKRIGRAIAEALAAEGYRVVVHYNRSEAEAQRLKDELNALRNSAVLVQA---- 57
Query: 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHL 181
DL + A G VL+NNA F + S+D + E +N
Sbjct: 58 ------DLSDFAACADLVAAAFRAFGRCDVLVNNASAFYPTPLGQGSEDAWAELFGINLK 111
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
AP LL L IIN+ D Y + Y SK A
Sbjct: 112 APYLLIQAFARRLAGSRNGSIINII------------DAMTDRPLTGYFA---YCMSKAA 156
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276
+ L I V ++PG++ D
Sbjct: 157 LEGLTRSAALELAPN--IRVNGIAPGLILLPEDMD 189
|
Pteridine reductases (PRs), members of the SDR family, catalyzes the NAD-dependent reduction of folic acid, dihydrofolate and related compounds. In Leishmania, pteridine reductase (PTR1) acts to circumvent the anti-protozoan drugs that attack dihydrofolate reductase activity. Proteins in this subgroup have an N-terminal NAD-binding motif and a YxxxK active site motif, but have an Asp instead of the usual upstream catalytic Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 234 |
| >gnl|CDD|180604 PRK06523, PRK06523, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-13
Identities = 58/209 (27%), Positives = 87/209 (41%), Gaps = 40/209 (19%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG T GIG +L E+GA VV R+ LP +E + D
Sbjct: 13 LVTGGTKGIGAATVARLLEAGARVVTTARS---------------RPDDLPEGVEFVAAD 57
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKF---SKDGYEEHMQVNHLAPAL 185
L + + + A RLG + +L++ G S F + + +++ + +N LA
Sbjct: 58 LTTAEGCAAVARAVLERLGGVDILVHVLG-GSSAPAGGFAALTDEEWQDELNLNLLAAVR 116
Query: 186 LSILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRR--KYTSLMGYSGSKLAQ 242
L L P +I RGS II+V S+ RR S Y+ +K A
Sbjct: 117 LDRALLPGMIARGSGV-IIHVTSI----------------QRRLPLPESTTAYAAAKAAL 159
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVST 271
+S L K + A G+ V VSPG + T
Sbjct: 160 STYSKSLSKEV-APKGVRVNTVSPGWIET 187
|
Length = 260 |
| >gnl|CDD|187623 cd05365, 7_alpha_HSDH_SDR_c, 7 alpha-hydroxysteroid dehydrogenase (7 alpha-HSDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 1e-13
Identities = 57/207 (27%), Positives = 89/207 (42%), Gaps = 29/207 (14%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
IVTG +GIG+ IA LA++GA VV+A + A + Q+ G+ + +E +
Sbjct: 3 IVTGGAAGIGKAIAGTLAKAGASVVIADLKSEGAEAVAAAIQQA-GGQAI-----GLECN 56
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHM----QVNHLAPA 184
+ S + +A + G + +L+NNAG G P+ F EE ++N +
Sbjct: 57 VTSEQDLEAVVKATVSQFGGITILVNNAG---GGGPKPFDMPMTEEDFEWAFKLNLFSAF 113
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
LS L P + + I+N++S +S K + Y SK A
Sbjct: 114 RLSQLCAPHMQKAGGGAILNISS---------------MSSENKNVRIAAYGSSKAAVNH 158
Query: 245 FSSILQKRLPAESGINVVCVSPGIVST 271
+ L L GI V V+PG V T
Sbjct: 159 MTRNLAFDL-GPKGIRVNAVAPGAVKT 184
|
This bacterial subgroup contains 7 alpha-HSDHs, including Escherichia coli 7 alpha-HSDH. 7 alpha-HSDH, a member of the SDR family, catalyzes the NAD+ -dependent dehydrogenation of a hydroxyl group at position 7 of the steroid skeleton of bile acids. In humans the two primary bile acids are cholic and chenodeoxycholic acids, these are formed from cholesterol in the liver. Escherichia coli 7 alpha-HSDH dehydroxylates these bile acids in the human intestine. Mammalian 7 alpha-HSDH activity has been found in livers. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|236094 PRK07774, PRK07774, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-13
Identities = 55/232 (23%), Positives = 91/232 (39%), Gaps = 34/232 (14%)
Query: 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124
D IVTG+ GIG+ A LA GA VV+A N + A ++ ++ G A
Sbjct: 6 DKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGA----ERVAKQIVADG--GTAIA 59
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSK---DGYEEHMQVNHL 181
+++D+ DS ++A G + L+NNA I+ + D Y++ M VN
Sbjct: 60 VQVDVSDPDSAKAMADATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLD 119
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMH--YVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
+ + ++ + + I+N +S Y F Y +K
Sbjct: 120 GALVCTRAVYKHMAKRGGGAIVNQSSTAAWLYSNF--------------------YGLAK 159
Query: 240 LAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-PK-IVQAAYHLIP 289
+ + L + L I V ++PG + T R + PK V IP
Sbjct: 160 VGLNGLTQQLAREL-GGMNIRVNAIAPGPIDTEATRTVTPKEFVADMVKGIP 210
|
Length = 250 |
| >gnl|CDD|187634 cd08929, SDR_c4, classical (c) SDR, subgroup 4 | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-13
Identities = 51/206 (24%), Positives = 78/206 (37%), Gaps = 25/206 (12%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG++ GIG AR L G V + R+ L +E L L D
Sbjct: 4 LVTGASRGIGEATARLLHAEGYRVGICARD---EARLAAAAAQEL-EGVLGL-----AGD 54
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ V R +A G L L+NNAG+ + ++ + + + + N
Sbjct: 55 VRDEADVRRAVDAMEEAFGGLDALVNNAGVGVMKPVEELTPEEWRLVLDTNLTGAFYCIH 114
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
P+L+R I+NV S ++G+ + Y+ SK + S
Sbjct: 115 KAAPALLRRGGGTIVNVGS---------------LAGKNAFKGGAAYNASKFGLLGLSEA 159
Query: 249 LQKRLPAESGINVVCVSPGIVSTNVA 274
L E+ I VV V PG V T A
Sbjct: 160 AMLDL-REANIRVVNVMPGSVDTGFA 184
|
This subgroup has a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 226 |
| >gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 3e-13
Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 31/216 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVR---NLKAANELIQKWQEEWSGKGLPLNIE 123
T +VTG + G+G +IA L E+GA VV++ R L+ A ++ L I+
Sbjct: 14 TALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEA-----------LGID 62
Query: 124 AMEL--DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNH 180
A+ + D+ + R +E R G + +L+NNAG + G P + + +++ M +N
Sbjct: 63 ALWIAADVADEADIERLAEETLERFGHVDILVNNAGA-TWGAPAEDHPVEAWDKVMNLNV 121
Query: 181 LAPALLS-ILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
LLS + S+I RIINV SV G E M+ + Y+ SK
Sbjct: 122 RGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGG-NPPEVMDTI----------AYNTSK 170
Query: 240 LAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275
A I F+ L GI V ++PG T + R
Sbjct: 171 GAVINFTRALAAEW-GPHGIRVNAIAPGFFPTKMTR 205
|
Length = 259 |
| >gnl|CDD|187644 cd08940, HBDH_SDR_c, d-3-hydroxybutyrate dehydrogenase (HBDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 3e-13
Identities = 52/212 (24%), Positives = 81/212 (38%), Gaps = 34/212 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANE---LIQKWQEEWSGKGLPLNIE 123
+VTGSTSGIG IAR LA +GA++V + A E + + K L
Sbjct: 4 VALVTGSTSGIGLGIARALAAAGANIV--LNGFGDAAEIEAVRAGLAAKHGVKVLYHGA- 60
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAP 183
DL ++ + G + +L+NNAGI + + F + ++ + +N A
Sbjct: 61 ----DLSKPAAIEDMVAYAQRQFGGVDILVNNAGIQHVAPIEDFPTEKWDAIIALNLSAV 116
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV----VSGRRKYTSLMGYSGSK 239
+ L P + + RIIN+ SV V + V G K +L
Sbjct: 117 FHTTRLALPHMKKQGWGRIINIASVHGLVASANKSAYVAAKHGVVGLTKVVALET----- 171
Query: 240 LAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
A +G+ + PG V T
Sbjct: 172 ---------------AGTGVTCNAICPGWVLT 188
|
DHBDH, an NAD+ -dependent enzyme, catalyzes the interconversion of D-3-hydroxybutyrate and acetoacetate. It is a classical SDR, with the canonical NAD-binding motif and active site tetrad. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|237219 PRK12827, PRK12827, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-13
Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 41/221 (18%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVM----AVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
+TG + G+GR IA +LA GA V++ +R A+ + E GK L L +
Sbjct: 11 ITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAG-IEAAGGKALGLAFDVR 69
Query: 126 ELDLL--SLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN---- 179
+ +LD+ V G L +L+NNAGI + + S + +++ + VN
Sbjct: 70 DFAATRAALDAGVE-------EFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGF 122
Query: 180 -HLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
++ A L P +IR RI+N+ S V+G R + Y+
Sbjct: 123 FNVTQAAL-----PPMIRARRGGRIVNIAS---------------VAGVRGNRGQVNYAA 162
Query: 238 SKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
SK I + L L A GI V V+PG ++T +A +
Sbjct: 163 SKAGLIGLTKTLANEL-APRGITVNAVAPGAINTPMADNAA 202
|
Length = 249 |
| >gnl|CDD|187624 cd05366, meso-BDH-like_SDR_c, meso-2,3-butanediol dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-13
Identities = 60/208 (28%), Positives = 91/208 (43%), Gaps = 26/208 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNL-KAANELIQKWQEEWSGKGLPLNIEAM 125
I+TG+ GIGR IA +LA G ++V+A NL +AA IQ+ E N A+
Sbjct: 4 VAIITGAAQGIGRAIAERLAADGFNIVLADLNLEEAAKSTIQEISE------AGYNAVAV 57
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
D+ D V + + G V++NNAGI I +++ ++ VN + L
Sbjct: 58 GADVTDKDDVEALIDQAVEKFGSFDVMVNNAGIAPITPLLTITEEDLKKVYAVN-VFGVL 116
Query: 186 LSILLFPSLIR--GSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
I + G +IIN +S ++G + + +L YS SK A
Sbjct: 117 FGIQAAARQFKKLGHGGKIINASS---------------IAGVQGFPNLGAYSASKFAVR 161
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVST 271
+ + L A GI V +PGIV T
Sbjct: 162 GLTQTAAQEL-APKGITVNAYAPGIVKT 188
|
2,3-butanediol dehydrogenases (BDHs) catalyze the NAD+ dependent conversion of 2,3-butanediol to acetonin; BDHs are classified into types according to their stereospecificity as to substrates and products. Included in this subgroup are Klebsiella pneumonia meso-BDH which catalyzes meso-2,3-butanediol to D(-)-acetonin, and Corynebacterium glutamicum L-BDH which catalyzes lX+)-2,3-butanediol to L(+)-acetonin. This subgroup is comprised of classical SDRs with the characteristic catalytic triad and NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|237220 PRK12828, PRK12828, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 4e-13
Identities = 49/212 (23%), Positives = 79/212 (37%), Gaps = 27/212 (12%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE-AMEL 127
+TG G+GR A LA GA V + R ++ + G+P + +
Sbjct: 11 AITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTL---------PGVPADALRIGGI 61
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLS 187
DL+ + R + N + G L L+N AG F G D ++ VN S
Sbjct: 62 DLVDPQAARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNAS 121
Query: 188 ILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSS 247
P+L RI+N+ + + + + Y+ +K + +
Sbjct: 122 KAALPALTASGGGRIVNIGA---------------GAALKAGPGMGAYAAAKAGVARLTE 166
Query: 248 ILQKRLPAESGINVVCVSPGIVSTNVAR-DLP 278
L L + GI V V P I+ T R D+P
Sbjct: 167 ALAAEL-LDRGITVNAVLPSIIDTPPNRADMP 197
|
Length = 239 |
| >gnl|CDD|187649 cd08945, PKR_SDR_c, Polyketide ketoreductase, classical (c) SDR | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 4e-13
Identities = 54/210 (25%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+TSGIG IAR+L + G V + R + +++ +E + +
Sbjct: 5 VALVTGATSGIGLAIARRLGKEGLRVFVCARGEEGLATTVKELREA------GVEADGRT 58
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ S+ + A R GP+ VL+NNAG G + + + + + ++ N +
Sbjct: 59 CDVRSVPEIEALVAAAVARYGPIDVLVNNAGRSGGGATAELADELWLDVVETNLTGVFRV 118
Query: 187 S--ILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
+ +L ++ RIIN+ S G++ YS SK +
Sbjct: 119 TKEVLKAGGMLERGTGRIINIAS---------------TGGKQGVVHAAPYSASKHGVVG 163
Query: 245 FSSILQKRLPAESGINVVCVSPGIVSTNVA 274
F+ L L A +GI V V PG V T +A
Sbjct: 164 FTKALGLEL-ARTGITVNAVCPGFVETPMA 192
|
Polyketide ketoreductase (KR) is a classical SDR with a characteristic NAD-binding pattern and active site tetrad. Aromatic polyketides include various aromatic compounds of pharmaceutical interest. Polyketide KR, part of the type II polyketide synthase (PKS) complex, is comprised of stand-alone domains that resemble the domains found in fatty acid synthase and multidomain type I PKS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 258 |
| >gnl|CDD|187592 cd05331, DH-DHB-DH_SDR_c, 2,3 dihydro-2,3 dihydrozybenzoate dehydrogenases, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 4e-13
Identities = 55/209 (26%), Positives = 77/209 (36%), Gaps = 29/209 (13%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
IVTG+ GIGR +AR L ++GA V+ L + G PL + + D
Sbjct: 2 IVTGAAQGIGRAVARHLLQAGATVI----------ALDLPFVLL-LEYGDPLRLTPL--D 48
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ +V GP+ L+N AG+ G S + +E+ VN L
Sbjct: 49 VADAAAVREVCSRLLAEHGPIDALVNCAGVLRPGATDPLSTEDWEQTFAVNVTGVFNLLQ 108
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
+ P + I+ V S N R S+ Y SK A S
Sbjct: 109 AVAPHMKDRRTGAIVTVAS-------------NAAHVPR--ISMAAYGASKAALASLSKC 153
Query: 249 LQKRLPAESGINVVCVSPGIVSTNVARDL 277
L L A G+ VSPG T + R L
Sbjct: 154 LGLEL-APYGVRCNVVSPGSTDTAMQRTL 181
|
2,3 dihydro-2,3 dihydrozybenzoate dehydrogenase shares the characteristics of the classical SDRs. This subgroup includes Escherichai coli EntA which catalyzes the NAD+-dependent oxidation of 2,3-dihydro-2,3-dihydroxybenzoate to 2,3-dihydroxybenzoate during biosynthesis of the siderophore Enterobactin. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 244 |
| >gnl|CDD|187627 cd05369, TER_DECR_SDR_a, Trans-2-enoyl-CoA reductase (TER) and 2,4-dienoyl-CoA reductase (DECR), atypical (a) SDR | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 5e-13
Identities = 44/213 (20%), Positives = 81/213 (38%), Gaps = 30/213 (14%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+TG +GIG+ IA+ AE GA V +A R + ++ G+ P+ D
Sbjct: 7 FITGGGTGIGKAIAKAFAELGASVAIAGRKPEVLEAAAEEISSATGGRAHPIQC-----D 61
Query: 129 LLSLDSVVR-FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLS 187
+ ++V E G + +LINNA + + S +G++ + ++ +
Sbjct: 62 VRDPEAVEAAVDETLK-EFGKIDILINNAAGNFLAPAESLSPNGFKTVIDIDLNGTFNTT 120
Query: 188 ILLFPSLIR-GSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ LI I+N+++ Y G +S + A +
Sbjct: 121 KAVGKRLIEAKHGGSILNISATYAYTGSP----------------FQVHSAAAKAGV--- 161
Query: 247 SILQKRLPAE---SGINVVCVSPGIVSTNVARD 276
L + L E GI V ++PG + T +
Sbjct: 162 DALTRSLAVEWGPYGIRVNAIAPGPIPTTEGME 194
|
TTER is a peroxisomal protein with a proposed role in fatty acid elongation. Fatty acid synthesis is known to occur in the both endoplasmic reticulum and mitochondria; peroxisomal TER has been proposed as an additional fatty acid elongation system, it reduces the double bond at C-2 as the last step of elongation. This system resembles the mitochondrial system in that acetyl-CoA is used as a carbon donor. TER may also function in phytol metabolism, reducting phytenoyl-CoA to phytanoyl-CoA in peroxisomes. DECR processes double bonds in fatty acids to increase their utility in fatty acid metabolism; it reduces 2,4-dienoyl-CoA to an enoyl-CoA. DECR is active in mitochondria and peroxisomes. This subgroup has the Gly-rich NAD-binding motif of the classical SDR family, but does not display strong identity to the canonical active site tetrad, and lacks the characteristic Tyr at the usual position. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 249 |
| >gnl|CDD|187608 cd05350, SDR_c6, classical (c) SDR, subgroup 6 | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 6e-13
Identities = 45/206 (21%), Positives = 82/206 (39%), Gaps = 28/206 (13%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
++TG++SGIGR +AR+ A++G +V +A R + + + + E ++E LD
Sbjct: 2 LITGASSGIGRALAREFAKAGYNVALAARRT----DRLDELKAEL--LNPNPSVEVEILD 55
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEH---MQVNHLAPAL 185
+ + LG L ++I NAG +G+ ++ + N L A
Sbjct: 56 VTDEERNQLVIAELEAELGGLDLVIINAG---VGKGTSLGDLSFKAFRETIDTNLLGAAA 112
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ P ++ ++SV G YS SK A
Sbjct: 113 ILEAALPQFRAKGRGHLVLISSVAALRGLPGA---------------AAYSASKAALSSL 157
Query: 246 SSILQKRLPAESGINVVCVSPGIVST 271
+ L+ + + GI V ++PG + T
Sbjct: 158 AESLRYDV-KKRGIRVTVINPGFIDT 182
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 239 |
| >gnl|CDD|235702 PRK06124, PRK06124, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 6e-13
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRN---LKAANELIQKWQEEWSGKGLPLNIE 123
+VTGS G+G EIAR LA +GAHV++ RN L+AA ++ G E
Sbjct: 13 VALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRA-------AG--GAAE 63
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAP 183
A+ D+ ++V + G L +L+NN G + ++ + +AP
Sbjct: 64 ALAFDIADEEAVAAAFARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAP 123
Query: 184 ALLSILLFPSLIRGSPSRIINVNSV 208
LLS L + R RII + S+
Sbjct: 124 ILLSRLAAQRMKRQGYGRIIAITSI 148
|
Length = 256 |
| >gnl|CDD|171821 PRK12937, PRK12937, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 7e-13
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 25/209 (11%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMEL 127
IVTG++ GIG IAR+LA G V + + AA+EL+ + + G+ + A++
Sbjct: 9 IVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAA-GGRAI-----AVQA 62
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLS 187
D+ +V R +A G + VL+NNAG+ +G F + ++ + N ++
Sbjct: 63 DVADAAAVTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVL 122
Query: 188 ILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSS 247
L +G RIIN+++ +V+ Y+ SK A
Sbjct: 123 REAARHLGQG--GRIINLST-------------SVI--ALPLPGYGPYAASKAAVEGLVH 165
Query: 248 ILQKRLPAESGINVVCVSPGIVSTNVARD 276
+L L GI V V+PG V+T + +
Sbjct: 166 VLANELRGR-GITVNAVAPGPVATELFFN 193
|
Length = 245 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 68.0 bits (166), Expect = 9e-13
Identities = 53/215 (24%), Positives = 84/215 (39%), Gaps = 34/215 (15%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+ GIGR ++ A +G VV+A RN++ A E + A+ +D
Sbjct: 9 LVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDH---------HALAMD 59
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQ-----KFSKDGYEEHMQVNHLAP 183
+ + E + G + VL+NNAG+ +P + + + +N
Sbjct: 60 VSDEAQIREGFEQLHREFGRIDVLVNNAGVT---DPTMTATLDTTLEEFARLQAINLTGA 116
Query: 184 ALLSILLFPSLIRGSP-SRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
L++ +I + I+NV S V + R YS SK A
Sbjct: 117 YLVAREALRLMIEQGHGAAIVNVASGAGLVA---------LPKRT------AYSASKAAV 161
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
I + L A GI V V PG V T + +L
Sbjct: 162 ISLTRSLACEW-AAKGIRVNAVLPGYVRTQMVAEL 195
|
Length = 520 |
| >gnl|CDD|188170 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 1e-12
Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 25/207 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+ +G+G+ IA LAE+GA +V A +E Q+ + G+ ++
Sbjct: 7 VALVTGANTGLGQGIAVGLAEAGADIVGA--GRSEPSETQQQVEAL--GR----RFLSLT 58
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
DL ++++ ++ G + +L+NNAGI + ++FS+ +++ M VN + L
Sbjct: 59 ADLSDIEAIKALVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFL 118
Query: 187 SILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ + +G +IIN+ S++ + G G R + Y+ SK A
Sbjct: 119 TQAAAKHFLKQGRGGKIINIASMLSFQG-----------GIR----VPSYTASKHAVAGL 163
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTN 272
+ +L A GINV ++PG ++TN
Sbjct: 164 TKLLANEW-AAKGINVNAIAPGYMATN 189
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 248 |
| >gnl|CDD|187626 cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-12
Identities = 53/213 (24%), Positives = 82/213 (38%), Gaps = 36/213 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++T + GIGR IA A GA+V+ NE +K +E G G+
Sbjct: 4 VALITAAAQGIGRAIALAFAREGANVIAT-----DINE--EKLKELERGPGIT----TRV 52
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LD+ + V ++ G + VL N AG G D ++ M +N + L+
Sbjct: 53 LDVTDKEQVAALAK----EEGRIDVLFNCAGFVHHGSILDCEDDDWDFAMNLNVRSMYLM 108
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ P ++ IIN++SV + V R YS +K A I
Sbjct: 109 IKAVLPKMLARKDGSIINMSSV--------ASSIKGVPNR------FVYSTTKAAVIG-- 152
Query: 247 SILQKRLPAE---SGINVVCVSPGIVSTNVARD 276
L K + A+ GI + PG V T +
Sbjct: 153 --LTKSVAADFAQQGIRCNAICPGTVDTPSLEE 183
|
Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P). Length = 241 |
| >gnl|CDD|235990 PRK07326, PRK07326, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-12
Identities = 57/216 (26%), Positives = 86/216 (39%), Gaps = 26/216 (12%)
Query: 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
++TG + GIG IA L G V + R+ K E E + KG L +
Sbjct: 5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAA----ELNNKGNVLGLA 60
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAP 183
A D+ V R +A G L VLI NAG+ ++ + + + + N L
Sbjct: 61 A---DVRDEADVQRAVDAIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTN-LTG 116
Query: 184 ALLSI-LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
A +I P+L RG IIN++S ++G + Y+ SK
Sbjct: 117 AFYTIKAAVPALKRGG-GYIINISS---------------LAGTNFFAGGAAYNASKFGL 160
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
+ FS L + GI V + PG V+T+ P
Sbjct: 161 VGFSEAAMLDL-RQYGIKVSTIMPGSVATHFNGHTP 195
|
Length = 237 |
| >gnl|CDD|235712 PRK06138, PRK06138, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-12
Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 27/214 (12%)
Query: 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
IVTG+ SGIGR A+ A GA VV+A R+ +AA + ++
Sbjct: 4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVG 63
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAP 183
+ E +++++V F A R G L VL+NNAG G + ++ M+VN
Sbjct: 64 SAE----AVEALVDFVAA---RWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGV 116
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG--YSGSKLA 241
L + P + R I+N S + G GR Y + G S ++
Sbjct: 117 FLWAKYAIPIMQRQGGGSIVNTASQLALAG---------GRGRAAYVASKGAIASLTRAM 167
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275
+ A GI V V+PG + T R
Sbjct: 168 ALDH---------ATDGIRVNAVAPGTIDTPYFR 192
|
Length = 252 |
| >gnl|CDD|187600 cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 1e-12
Identities = 57/234 (24%), Positives = 83/234 (35%), Gaps = 38/234 (16%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
+ IVTG G+G AR L GA VV++ +E Q E L
Sbjct: 3 LKGKVAIVTGGARGLGLAHARLLVAEGAKVVLSDIL----DEEGQAAAAE-------LGD 51
Query: 123 EAM--ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNH 180
A LD+ D + G L VL+NNAGI + G + + + + + +N
Sbjct: 52 AARFFHLDVTDEDGWTAVVDTAREAFGRLDVLVNNAGILTGGTVETTTLEEWRRLLDIN- 110
Query: 181 LAPALLSILLFPSLIR----GSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYS 236
L L ++ GS IIN++S+ VG +L Y+
Sbjct: 111 LTGVFLGTRAVIPPMKEAGGGS---IINMSSIEGLVGDP---------------ALAAYN 152
Query: 237 GSKLAQIKFSSILQKRL-PAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIP 289
SK A + GI V V PG + T + +L Q P
Sbjct: 153 ASKGAVRGLTKSAALECATQGYGIRVNSVHPGYIYTPMTDELLI-AQGEMGNYP 205
|
This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 247 |
| >gnl|CDD|132250 TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 1e-12
Identities = 60/215 (27%), Positives = 87/215 (40%), Gaps = 22/215 (10%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
+ D T IVTG GIG R+ AE GA V + N +AA ++ + + N
Sbjct: 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGG------NA 54
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA 182
+A D+ DSV A LGP+ VL+NNAG G K +E + +N
Sbjct: 55 QAFACDITDRDSVDTAVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTG 114
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
+ + P ++ RI+N+ S VG SG Y + G
Sbjct: 115 ALHMHHAVLPGMVERGAGRIVNIASDAARVG---------SSGEAVYAACKG------GL 159
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
+ FS + + A GI V V PG T + D+
Sbjct: 160 VAFSKTMAREH-ARHGITVNVVCPGPTDTALLDDI 193
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. Length = 250 |
| >gnl|CDD|187621 cd05363, SDH_SDR_c, Sorbitol dehydrogenase (SDH), classical (c) SDR | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 1e-12
Identities = 53/210 (25%), Positives = 89/210 (42%), Gaps = 26/210 (12%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
++ T ++TGS GIGR A+ GA V +A NL+AA + +
Sbjct: 1 LDGKTALITGSARGIGRAFAQAYVREGARVAIADINLEAARATAAE---------IGPAA 51
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA 182
A+ LD+ S+ R A R G + +L+NNA +F + +++ Y+ +N
Sbjct: 52 CAISLDVTDQASIDRCVAALVDRWGSIDILVNNAALFDLAPIVDITRESYDRLFAINVSG 111
Query: 183 PALLSILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
+ + ++I +G +IIN+ S +GRR + Y +K A
Sbjct: 112 TLFMMQAVARAMIAQGRGGKIINMAS---------------QAGRRGEALVGVYCATKAA 156
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVST 271
I + L GINV ++PG+V
Sbjct: 157 VISLTQSAGLNL-IRHGINVNAIAPGVVDG 185
|
This bacterial subgroup includes Rhodobacter sphaeroides SDH, and other SDHs. SDH preferentially interconverts D-sorbitol (D-glucitol) and D-fructose, but also interconverts L-iditol/L-sorbose and galactitol/D-tagatose. SDH is NAD-dependent and is a dimeric member of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 254 |
| >gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-12
Identities = 64/209 (30%), Positives = 91/209 (43%), Gaps = 40/209 (19%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL 129
VTG++SGIG+ AR+LA G V A R + +L L + + LD+
Sbjct: 8 VTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS------------LGVHPLSLDV 55
Query: 130 L---SLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQ--VNHLAPA 184
S+ + V A GR + VL+NNAG S G + D E Q VN A
Sbjct: 56 TDEASIKAAVDTIIAEEGR---IDVLVNNAGYGSYGAIEDVPID--EARRQFEVNLFGAA 110
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG-YSGSKLAQI 243
L+ L+ P + RIIN++S+ G + YT L Y +K A
Sbjct: 111 RLTQLVLPHMRAQRSGRIINISSM----------------GGKIYTPLGAWYHATKFALE 154
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVSTN 272
FS L+ + A GI+VV + PG + T
Sbjct: 155 GFSDALRLEV-APFGIDVVVIEPGGIKTE 182
|
Length = 273 |
| >gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-12
Identities = 47/213 (22%), Positives = 85/213 (39%), Gaps = 31/213 (14%)
Query: 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL---KAANELIQKWQEEWSGKGL 118
++ +VTG SGIG IA A GA V + R+ + A +L L
Sbjct: 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQL------------L 59
Query: 119 PLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQV 178
N + + D+ SV A G + +L+N+AG+ + + S++ +++ + +
Sbjct: 60 GGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDI 119
Query: 179 NHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGS 238
N L++ + +I +I+N+ S V + +V Y S
Sbjct: 120 NLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVAL----ERHV-----------AYCAS 164
Query: 239 KLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
K + + +L GI V +SP +V T
Sbjct: 165 KAGVVGMTKVLALEW-GPYGITVNAISPTVVLT 196
|
Length = 255 |
| >gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-12
Identities = 43/206 (20%), Positives = 84/206 (40%), Gaps = 24/206 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG++SGIG+ A A++G + + R+ + ++ E G+ +++
Sbjct: 8 RALITGASSGIGKATALAFAKAGWDLALVARSQ----DALEALAAELRSTGVKAAAYSID 63
Query: 127 L-DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
L + ++ + + G VLINNAG+ G + ++ +Q+N +
Sbjct: 64 LSNPEAIAPGI---AELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQ 120
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ P + IINV+S ++ R + Y SK A F
Sbjct: 121 CCSAVLPGMRARGGGLIINVSS---------------IAARNAFPQWGAYCVSKAALAAF 165
Query: 246 SSILQKRLPAESGINVVCVSPGIVST 271
+ L + + GI V ++ G V+T
Sbjct: 166 TKCLAEEERSH-GIRVCTITLGAVNT 190
|
Length = 241 |
| >gnl|CDD|237188 PRK12745, PRK12745, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-12
Identities = 50/212 (23%), Positives = 83/212 (39%), Gaps = 31/212 (14%)
Query: 69 IVTGSTSGIGREIARQLAESGAHV-VMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMEL 127
+VTG GIG IAR LA +G + + + + Q+ + L + +
Sbjct: 6 LVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQE------LRALGVEVIFFPA 59
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSI--GEPQKFSKDGYEEHMQVNHLAPAL 185
D+ L + +A G + L+NNAG+ G+ + + ++ + +N P
Sbjct: 60 DVADLSAHEAMLDAAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFF 119
Query: 186 LS------ILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
L+ +L P I+ V+SV + +VS R Y SK
Sbjct: 120 LTQAVAKRMLAQPEPEELPHRSIVFVSSV----------NAIMVSPNR-----GEYCISK 164
Query: 240 LAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
+ + RL AE GI V V PG++ T
Sbjct: 165 AGLSMAAQLFAARL-AEEGIGVYEVRPGLIKT 195
|
Length = 256 |
| >gnl|CDD|237189 PRK12748, PRK12748, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-12
Identities = 60/236 (25%), Positives = 94/236 (39%), Gaps = 32/236 (13%)
Query: 67 TCIVTGST--SGIGREIARQLAESGAHVVMA-----VRNLKAANELIQKW--QEEWSGKG 117
+VTG++ +GIG + R+LA G + + + + +EE G
Sbjct: 7 IALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYG 66
Query: 118 LPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQ 177
+ E ME+DL + R A + RLG +LINNA + ++ + + ++H
Sbjct: 67 VRC--EHMEIDLSQPYAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYA 124
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
VN A LLS + RIIN+ S D + Y+
Sbjct: 125 VNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLGPMPDE---------------LAYAA 169
Query: 238 SKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIF 293
+K A F+ L L AE GI V V+PG T + + +HL+P F
Sbjct: 170 TKGAIEAFTKSLAPEL-AEKGITVNAVNPGPTDTGWITE-----ELKHHLVPKFPQ 219
|
Length = 256 |
| >gnl|CDD|181198 PRK08017, PRK08017, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 3e-12
Identities = 59/209 (28%), Positives = 89/209 (42%), Gaps = 35/209 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+ ++TG +SGIG E A +L G V+ A R K + + + L +
Sbjct: 4 SVLITGCSSGIGLEAALELKRRGYRVLAACR--KPDD--VARMNS--------LGFTGIL 51
Query: 127 LDLLSLDSVVRFSEA----WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA 182
LDL +SV R ++ + RL + L NNAG G S+ E+ N
Sbjct: 52 LDLDDPESVERAADEVIALTDNRL---YGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFG 108
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
L++LL P+++ RI+ +SVM G + T GR Y+ SK A
Sbjct: 109 THQLTMLLLPAMLPHGEGRIVMTSSVM---GLIST------PGRG------AYAASKYAL 153
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVST 271
+S L+ L SGI V + PG + T
Sbjct: 154 EAWSDALRMEL-RHSGIKVSLIEPGPIRT 181
|
Length = 256 |
| >gnl|CDD|180411 PRK06123, PRK06123, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 4e-12
Identities = 60/227 (26%), Positives = 95/227 (41%), Gaps = 60/227 (26%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMEL 127
I+TG++ GIG A AE G V + +RN AA ++Q + + G+ L A+
Sbjct: 6 IITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQ-GGEAL-----AVAA 59
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLS 187
D+ V+R EA + LG L L+NNAGI E M++ + A L+
Sbjct: 60 DVADEADVLRLFEAVDRELGRLDALVNNAGIL-------------EAQMRLEQMDAARLT 106
Query: 188 ILLFPSLI-----------RGSPSR------IINVNSVMHYVG----FVDTEDMNVVSGR 226
+ +++ R S I+NV+S+ +G ++D
Sbjct: 107 RIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGSPGEYID---------- 156
Query: 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273
Y+ SK A + L K + AE GI V V PG++ T +
Sbjct: 157 --------YAASKGAIDTMTIGLAKEVAAE-GIRVNAVRPGVIYTEI 194
|
Length = 248 |
| >gnl|CDD|171820 PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 5e-12
Identities = 66/214 (30%), Positives = 96/214 (44%), Gaps = 36/214 (16%)
Query: 65 DLT---CIVTGSTSGIGREIARQLAESGAHVVM---AVRNLKA-ANELIQKWQEEWSGKG 117
DL+ +VTG++ GIG EIAR L GA V + V L+A A EL ++ K
Sbjct: 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGER------VKI 56
Query: 118 LPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQ 177
P N L D V + L + +L+NNAGI G + S + ++ ++
Sbjct: 57 FPAN-------LSDRDEVKALGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLE 109
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
VN A L+ L ++R RIIN+ SV VG V+G + Y
Sbjct: 110 VNLTATFRLTRELTHPMMRRRYGRIINITSV---VG---------VTGNPGQAN---YCA 154
Query: 238 SKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
SK I FS L + + A + V CV+PG + +
Sbjct: 155 SKAGMIGFSKSLAQEI-ATRNVTVNCVAPGFIES 187
|
Length = 245 |
| >gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 5e-12
Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 30/230 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG + GIG IAR LAE+GA V + + A E ++ +++ K +A +
Sbjct: 10 VAIVTGGSRGIGLAIARALAEAGADVAIIYNSAPRAEEKAEELAKKYGVK-----TKAYK 64
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN-----HL 181
D+ S +SV + + G + +LI NAGI ++ + + + + VN +
Sbjct: 65 CDVSSQESVEKTFKQIQKDFGKIDILIANAGITVHKPALDYTYEQWNKVIDVNLNGVFNC 124
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
A A I F +GS +I S+ + Y+ SK A
Sbjct: 125 AQAAAKI--FKKQGKGS---LIITASMSGTIVNRPQPQ-------------AAYNASKAA 166
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYH-LIPY 290
I + L A+ I V +SPG + T++ + K ++ + IP
Sbjct: 167 VIHLAKSLAVEW-AKYFIRVNSISPGYIDTDLTDFVDKELRKKWESYIPL 215
|
NADP-mannitol dehydrogenase catalyzes the conversion of fructose to mannitol, an acyclic 6-carbon sugar. MDH is a tetrameric member of the SDR family. This subgroup also includes various other tetrameric SDRs, including Pichia stipitis D-arabinitol dehydrogenase (aka polyol dehydrogenase), Candida albicans Sou1p, a sorbose reductase, and Candida parapsilosis (S)-specific carbonyl reductase (SCR, aka S-specific alcohol dehydrogenase) which catalyzes the enantioselective reduction of 2-hydroxyacetophenone into (S)-1-phenyl-1,2-ethanediol. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Length = 252 |
| >gnl|CDD|235725 PRK06179, PRK06179, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 6e-12
Identities = 57/204 (27%), Positives = 86/204 (42%), Gaps = 30/204 (14%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG++SGIGR A +LA +G V RN A +P +E +ELD
Sbjct: 8 LVTGASSGIGRATAEKLARAGYRVFGTSRNPARA-------------APIP-GVELLELD 53
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ SV + R G + VL+NNAG+ G ++ S + N ++
Sbjct: 54 VTDDASVQAAVDEVIARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTR 113
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
+ P + RIIN++SV+ GF+ M + Y+ SK A +S
Sbjct: 114 AVLPHMRAQGSGRIINISSVL---GFLPAPYMAL------------YAASKHAVEGYSES 158
Query: 249 LQKRLPAESGINVVCVSPGIVSTN 272
L + + GI V V P TN
Sbjct: 159 LDHEV-RQFGIRVSLVEPAYTKTN 181
|
Length = 270 |
| >gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 6e-12
Identities = 58/208 (27%), Positives = 88/208 (42%), Gaps = 28/208 (13%)
Query: 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMEL 127
C VTG+ SGIGR A +LA GA + + R+ A+ L Q + + G E L
Sbjct: 3 CFVTGAASGIGRATALRLAAQGAELFLTDRD---ADGLAQTVADARALGGTV--PEHRAL 57
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLS 187
D+ D+V F+ + G + V++N AGI + G + + + + + VN + P +
Sbjct: 58 DISDYDAVAAFAADIHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVI 117
Query: 188 ILLFPSLIR-GSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSL---MGYSGSKLAQI 243
P ++ G ++NV+S V L YS SK
Sbjct: 118 ETFVPPMVAAGRGGHLVNVSSAAGLVA------------------LPWHAAYSASKFGLR 159
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVST 271
S +L+ L A GI V V PG V T
Sbjct: 160 GLSEVLRFDL-ARHGIGVSVVVPGAVKT 186
|
Length = 272 |
| >gnl|CDD|187648 cd08944, SDR_c12, classical (c) SDR, subgroup 12 | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 6e-12
Identities = 51/217 (23%), Positives = 85/217 (39%), Gaps = 44/217 (20%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
IVTG+ +GIG A +LA GA VV+A + AA ++ + + A+ +D
Sbjct: 7 IVTGAGAGIGAACAARLAREGARVVVADIDGGAAQAVVAQ---------IAGGALALRVD 57
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVN-------- 179
+ V E G L +L+NNAG + +++ M +N
Sbjct: 58 VTDEQQVAALFERAVEEFGGLDLLVNNAGAMHLTPAIIDTDLAVWDQTMAINLRGTFLCC 117
Query: 180 -HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGS 238
H AP +++ RG S I+N++S ++G+ Y S
Sbjct: 118 RHAAPRMIA--------RGGGS-IVNLSS---------------IAGQSGDPGYGAYGAS 153
Query: 239 KLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275
K A + L L GI ++PG++ T +
Sbjct: 154 KAAIRNLTRTLAAELRHA-GIRCNALAPGLIDTPLLL 189
|
These are classical SDRs, with the canonical active site tetrad and glycine-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 246 |
| >gnl|CDD|235935 PRK07109, PRK07109, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 6e-12
Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 12/155 (7%)
Query: 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN---LKAANELIQKWQEEWSGK 116
L P+ ++TG+++G+GR AR A GA VV+ R L+A I G+
Sbjct: 3 LKPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEI----RAAGGE 58
Query: 117 GLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHM 176
L + D+ ++V ++ LGP+ +NNA + G + + + +
Sbjct: 59 ALAV-----VADVADAEAVQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVT 113
Query: 177 QVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY 211
+V +L ++ + II V S + Y
Sbjct: 114 EVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAY 148
|
Length = 334 |
| >gnl|CDD|181491 PRK08589, PRK08589, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 7e-12
Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 25/216 (11%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
+ + ++TG+++GIG+ A LA+ GA+ V+AV +A +E + K + GK
Sbjct: 4 LENKVAVITGASTGIGQASAIALAQEGAY-VLAVDIAEAVSETVDKIKSN-GGKA----- 56
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI-FSIGEPQKFSKDGYEEHMQVNHL 181
+A +D+ V F+ + G + VL NNAG+ + G ++ D +++ M V+
Sbjct: 57 KAYHVDISDEQQVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMR 116
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
L++ +L P ++ S IIN +S SG+ GY+ +K A
Sbjct: 117 GTFLMTKMLLPLMMEQGGS-IINTSS---------------FSGQAADLYRSGYNAAKGA 160
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
I F+ + GI ++PG + T + L
Sbjct: 161 VINFTKSIAIEY-GRDGIRANAIAPGTIETPLVDKL 195
|
Length = 272 |
| >gnl|CDD|235545 PRK05650, PRK05650, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 9e-12
Identities = 48/205 (23%), Positives = 85/205 (41%), Gaps = 22/205 (10%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL 129
+TG+ SG+GR IA + A G + +A N + E ++ +E G G D+
Sbjct: 5 ITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA-GGDGF-----YQRCDV 58
Query: 130 LSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSIL 189
+ ++A + G + V++NNAG+ S G ++ S + ++ + +N +
Sbjct: 59 RDYSQLTALAQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKA 118
Query: 190 LFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSIL 249
P R RI+N+ S+ G + M+ Y+ +K + S L
Sbjct: 119 FLPLFKRQKSGRIVNIASM---AGLMQGPAMS------------SYNVAKAGVVALSETL 163
Query: 250 QKRLPAESGINVVCVSPGIVSTNVA 274
L A+ I V V P TN+
Sbjct: 164 LVEL-ADDEIGVHVVCPSFFQTNLL 187
|
Length = 270 |
| >gnl|CDD|187662 cd09761, A3DFK9-like_SDR_c, Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 1e-11
Identities = 52/203 (25%), Positives = 80/203 (39%), Gaps = 27/203 (13%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
IVTG GIG++I E+G VV A + + + + N+ + D
Sbjct: 5 IVTGGGHGIGKQICLDFLEAGDKVVFADIDEERGADF---------AEAEGPNLFFVHGD 55
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ V A +LG + VL+NNA S G + ++ + VN P LS
Sbjct: 56 VADETLVKFVVYAMLEKLGRIDVLVNNAARGSKGILSSLLLEEWDRILSVNLTGPYELSR 115
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
LI+ RIIN+ S + D+E Y+ SK + +
Sbjct: 116 YCRDELIKNK-GRIINIASTRAFQSEPDSE---------------AYAASKGGLVALTHA 159
Query: 249 LQKRLPAESGINVVCVSPGIVST 271
L L + I V C+SPG ++T
Sbjct: 160 LAMSLGPD--IRVNCISPGWINT 180
|
This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 242 |
| >gnl|CDD|180753 PRK06924, PRK06924, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-11
Identities = 56/236 (23%), Positives = 103/236 (43%), Gaps = 28/236 (11%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMEL- 127
I+TG++ G+G IA QL E G HV+ R N+ + K E+++ L +++L
Sbjct: 5 IITGTSQGLGEAIANQLLEKGTHVISISRT---ENKELTKLAEQYNSN---LTFHSLDLQ 58
Query: 128 DLLSLDSVVR--FSEAWNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPA 184
D+ L++ S + +H LINNAG+ + I +K + ++ +N LAP
Sbjct: 59 DVHELETNFNEILSSIQEDNVSSIH-LINNAGMVAPIKPIEKAESEELITNVHLNLLAPM 117
Query: 185 LLSILLFPSL-IRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
+L+ R+IN++S + + Y Y SK
Sbjct: 118 ILTSTFMKHTKDWKVDKRVINISS---------------GAAKNPYFGWSAYCSSKAGLD 162
Query: 244 KFS-SILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNPQEG 298
F+ ++ ++ E + +V SPG++ TN+ + + + + FI +EG
Sbjct: 163 MFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQAQIRSSSKEDFTNLDRFITLKEEG 218
|
Length = 251 |
| >gnl|CDD|187616 cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-11
Identities = 59/232 (25%), Positives = 104/232 (44%), Gaps = 33/232 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAM 125
+VTG++SGIG+ IA +LA +GA+VV+ R AA E++++ + GK + A+
Sbjct: 5 VALVTGASSGIGKAIAIRLATAGANVVVNYRSKEDAAEEVVEE-IKAVGGKAI-----AV 58
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
+ D+ + VV ++ G L +L+NNAG+ + + + + + + VN L
Sbjct: 59 QADVSKEEDVVALFQSAIKEFGTLDILVNNAGLQGDASSHEMTLEDWNKVIDVNLTGQFL 118
Query: 186 LSILLFPSLIRGSPS-RIINVNSVMHYV---GFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
+ + +IIN++SV + G V+ Y+ SK
Sbjct: 119 CAREAIKRFRKSKIKGKIINMSSVHEKIPWPGHVN------------------YAASKGG 160
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTNV---ARDLPKIVQAAYHLIPY 290
+ L + A GI V ++PG ++T + A D P+ LIP
Sbjct: 161 VKMMTKTLAQEY-APKGIRVNAIAPGAINTPINAEAWDDPEQRADLLSLIPM 211
|
GlcDH, is a tetrameric member of the SDR family, it catalyzes the NAD(P)-dependent oxidation of beta-D-glucose to D-glucono-delta-lactone. GlcDH has a typical NAD-binding site glycine-rich pattern as well as the canonical active site tetrad (YXXXK motif plus upstream Ser and Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 253 |
| >gnl|CDD|236040 PRK07523, PRK07523, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-11
Identities = 46/150 (30%), Positives = 76/150 (50%), Gaps = 15/150 (10%)
Query: 65 DLT---CIVTGSTSGIGREIARQLAESGAHVVMAVRN---LKAANELIQKWQEEWSGKGL 118
DLT +VTGS+ GIG +A LA++GA V++ R+ L AA E + KG
Sbjct: 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESL---------KGQ 57
Query: 119 PLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQV 178
L+ A+ D+ D+V +A+ +GP+ +L+NNAG+ + F D +E ++
Sbjct: 58 GLSAHALAFDVTDHDAVRAAIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRT 117
Query: 179 NHLAPALLSILLFPSLIRGSPSRIINVNSV 208
N + + + +I +IIN+ SV
Sbjct: 118 NISSVFYVGQAVARHMIARGAGKIINIASV 147
|
Length = 255 |
| >gnl|CDD|236190 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 3e-11
Identities = 51/211 (24%), Positives = 74/211 (35%), Gaps = 31/211 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T VTG+ GIG +A E+GA V+ + P
Sbjct: 10 TVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFLTQE-------------DYPF--ATFV 54
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LD+ +V + + GPL VL+N AGI +G S + +++ VN L
Sbjct: 55 LDVSDAAAVAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNL 114
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ P R I+ V S N R + Y SK A +
Sbjct: 115 FRAVMPQFRRQRSGAIVTVGS-------------NAAHVPR--IGMAAYGASKAALTSLA 159
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDL 277
+ L A G+ VSPG T++ R L
Sbjct: 160 KCVGLEL-APYGVRCNVVSPGSTDTDMQRTL 189
|
Length = 252 |
| >gnl|CDD|180822 PRK07069, PRK07069, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-11
Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 27/151 (17%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL 129
+TG+ G+GR IAR++AE GA V + N A + G+G+ A D
Sbjct: 4 ITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAF---AAVQD- 59
Query: 130 LSLDSVVRFSEAW-------NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA 182
V W +G L VL+NNAG+ S G ++ D + M +N
Sbjct: 60 ------VTDEAQWQALLAQAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAIN--- 110
Query: 183 PALLSILL-----FPSLIRGSPSRIINVNSV 208
+ SI L P L P+ I+N++SV
Sbjct: 111 --VESIFLGCKHALPYLRASQPASIVNISSV 139
|
Length = 251 |
| >gnl|CDD|180576 PRK06463, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 3e-11
Identities = 56/216 (25%), Positives = 88/216 (40%), Gaps = 40/216 (18%)
Query: 65 DLTCIVTGSTSGIGREIARQLAESGAHV-VMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
++TG T GIGR IA GA V V+ A EL +K +
Sbjct: 7 GKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREK------------GVF 54
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAP 183
++ D+ + D V + E G + VL+NNAGI + ++F ++ Y + +++N
Sbjct: 55 TIKCDVGNRDQVKKSKEVVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGA 114
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG---YSGSKL 240
+ P L I+N+ S N G T+ G Y+ +K
Sbjct: 115 IYTTYEFLPLLKLSKNGAIVNIAS-------------NAGIG----TAAEGTTFYAITKA 157
Query: 241 AQIKFSSILQKRLP---AESGINVVCVSPGIVSTNV 273
I IL +RL + GI V V+PG V T++
Sbjct: 158 GII----ILTRRLAFELGKYGIRVNAVAPGWVETDM 189
|
Length = 255 |
| >gnl|CDD|181605 PRK08993, PRK08993, 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-11
Identities = 52/205 (25%), Positives = 98/205 (47%), Gaps = 25/205 (12%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG +G+G+ +A LAE+G +V N+ E I++ G+ L++ A D
Sbjct: 14 VVTGCDTGLGQGMALGLAEAGCDIVGI--NIVEPTETIEQVTAL--GRRF-LSLTA---D 65
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
L +D + E G + +L+NNAG+ + +FS+ +++ M +N + +S
Sbjct: 66 LRKIDGIPALLERAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQ 125
Query: 189 LLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSS 247
I +G+ +IIN+ S++ + G G R + Y+ SK + +
Sbjct: 126 AAAKHFIAQGNGGKIINIASMLSFQG-----------GIR----VPSYTASKSGVMGVTR 170
Query: 248 ILQKRLPAESGINVVCVSPGIVSTN 272
++ A+ INV ++PG ++TN
Sbjct: 171 LMANEW-AKHNINVNAIAPGYMATN 194
|
Length = 253 |
| >gnl|CDD|187597 cd05338, DHRS1_HSDL2-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) and human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 3e-11
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 16/153 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANE-----LIQKWQ------EEWSG 115
VTG++ GIGR IA +LA++GA VV+A + + L + E G
Sbjct: 5 VAFVTGASRGIGRAIALRLAKAGATVVVAAKTASEGDNGSAKSLPGTIEETAEEIEAAGG 64
Query: 116 KGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEH 175
+ LP+ +D+ D V EA + G L +L+NNAG + + ++
Sbjct: 65 QALPI-----VVDVRDEDQVRALVEATVDQFGRLDILVNNAGAIWLSLVEDTPAKRFDLM 119
Query: 176 MQVNHLAPALLSILLFPSLIRGSPSRIINVNSV 208
+VN LLS P +++ I+N++
Sbjct: 120 QRVNLRGTYLLSQAALPHMVKAGQGHILNISPP 152
|
This subgroup includes human DHRS1 and human HSDL2 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|181518 PRK08643, PRK08643, acetoin reductase; Validated | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-11
Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 27/206 (13%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+ GIG IA++L E G V + N + A K ++ GK + A++ D
Sbjct: 6 LVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD-GGKAI-----AVKAD 59
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN---HLAPAL 185
+ D V G L+V++NNAG+ + +++ +++ +N +
Sbjct: 60 VSDRDQVFAAVRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQ 119
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ F L G +IIN S VG L YS +K A
Sbjct: 120 AAQEAFKKL--GHGGKIINATSQAGVVG---------------NPELAVYSSTKFAVRGL 162
Query: 246 SSILQKRLPAESGINVVCVSPGIVST 271
+ + L A GI V +PGIV T
Sbjct: 163 TQTAARDL-ASEGITVNAYAPGIVKT 187
|
Length = 256 |
| >gnl|CDD|235933 PRK07097, PRK07097, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 6e-11
Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 6/145 (4%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
++TG++ GIG IA+ A++GA +V ++ EL+ K + G + D
Sbjct: 14 LITGASYGIGFAIAKAYAKAGATIV--FNDIN--QELVDKGLAAYRELG--IEAHGYVCD 67
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ D V +G + +L+NNAGI + S + + + + ++ AP ++S
Sbjct: 68 VTDEDGVQAMVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSK 127
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVG 213
+ PS+I+ +IIN+ S+M +G
Sbjct: 128 AVIPSMIKKGHGKIINICSMMSELG 152
|
Length = 265 |
| >gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 6e-11
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 8/140 (5%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+ GIG+ A++LA GA VV+A + +AA + E G L + D
Sbjct: 426 LVTGAAGGIGKATAKRLAAEGACVVLADLDEEAA----EAAAAELGGPDRAL---GVACD 478
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ +V E G + ++++NAGI G ++ S + + VN L++
Sbjct: 479 VTDEAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAR 538
Query: 189 LLFPSLIR-GSPSRIINVNS 207
+ G I+ + S
Sbjct: 539 EAVRIMKAQGLGGSIVFIAS 558
|
Length = 681 |
| >gnl|CDD|187617 cd05359, ChcA_like_SDR_c, 1-cyclohexenylcarbonyl_coenzyme A_reductase (ChcA)_like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-10
Identities = 53/211 (25%), Positives = 83/211 (39%), Gaps = 23/211 (10%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMEL 127
+VTG + GIG+ IA +LAE GA VV+ R + AA E+ + EE GK + +
Sbjct: 2 LVTGGSRGIGKAIALRLAERGADVVINYRKSKDAAAEVAAEI-EELGGKAVVV-----RA 55
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLS 187
D+ V A R G L VL++NA + + + ++ M N A +
Sbjct: 56 DVSQPQDVEEMFAAVKERFGRLDVLVSNAAAGAFRPLSELTPAHWDAKMNTNLKALVHCA 115
Query: 188 ILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSS 247
+ RI+ ++S + R + + +K A
Sbjct: 116 QQAAKLMRERGGGRIVAISS---------------LGSIRALPNYLAVGTAKAALEALVR 160
Query: 248 ILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
L L GI V VSPG++ T+ P
Sbjct: 161 YLAVEL-GPRGIRVNAVSPGVIDTDALAHFP 190
|
This subgroup contains classical SDR proteins, including members identified as 1-cyclohexenylcarbonyl coenzyme A reductase. ChcA of Streptomyces collinus is implicated in the final reduction step of shikimic acid to ansatrienin. ChcA shows sequence similarity to the SDR family of NAD-binding proteins, but it lacks the conserved Tyr of the characteristic catalytic site. This subgroup also contains the NADH-dependent enoyl-[acyl-carrier-protein(ACP)] reductase FabL from Bacillus subtilis. This enzyme participates in bacterial fatty acid synthesis, in type II fatty-acid synthases and catalyzes the last step in each elongation cycle. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 242 |
| >gnl|CDD|235693 PRK06077, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-10
Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 28/218 (12%)
Query: 65 DLTCIVTGSTSGIGREIARQLAESGAHVVM-AVRNLKAANELIQKWQEEWSGKGLPLNIE 123
D +VTGS GIGR IA +LA+ G+ VV+ A + + NE + K +E G+G+
Sbjct: 6 DKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETL-KMVKENGGEGI----- 59
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGY-EEHMQVNHLA 182
+ D+ + + ++A R G +L+NNAG+ + P D ++H+ + +
Sbjct: 60 GVLADVSTREGCETLAKATIDRYGVADILVNNAGL-GLFSPFLNVDDKLIDKHISTDFKS 118
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
S L + G I+N+ S V+G R L Y K A
Sbjct: 119 VIYCSQELAKEMREG--GAIVNIAS---------------VAGIRPAYGLSIYGAMKAAV 161
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI 280
I + L L + I V ++PG V T + L K+
Sbjct: 162 INLTKYLALELAPK--IRVNAIAPGFVKTKLGESLFKV 197
|
Length = 252 |
| >gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 1e-10
Identities = 57/226 (25%), Positives = 101/226 (44%), Gaps = 36/226 (15%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN---LKAANELIQKWQEEWSGKGLP 119
+N T +VTG+ SGIG+EIA +LA +GA V +A N A + I K GK +
Sbjct: 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINK----AGGKAI- 59
Query: 120 LNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN 179
+ +D+ + D+V + R G + +L++NAGI + + +S +++ MQ
Sbjct: 60 ----GVAMDVTNEDAVNAGIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKK-MQAI 114
Query: 180 HLAPALLSI-LLFPSLIRGSP-SRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
H+ A L+ + + +I + SV + + Y +
Sbjct: 115 HVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEA---------SPLKSAYVT------ 159
Query: 238 SKLAQIKFSSILQKRLPAESGI--NVVCVSPGIVSTN-VARDLPKI 280
+K + + +L K A+ + +VVC PG V T V + +P+
Sbjct: 160 AKHGLLGLARVLAKE-GAKHNVRSHVVC--PGFVRTPLVDKQIPEQ 202
|
Length = 262 |
| >gnl|CDD|181334 PRK08263, PRK08263, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-10
Identities = 51/206 (24%), Positives = 80/206 (38%), Gaps = 27/206 (13%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL 129
+TG++ G GR E G VV R+ +L +K+ + + LPL LD+
Sbjct: 8 ITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGD----RLLPLA-----LDV 58
Query: 130 LSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSIL 189
+V E G L +++NNAG G ++ ++ + N ++
Sbjct: 59 TDRAAVFAAVETAVEHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQA 118
Query: 190 LFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG-YSGSKLAQIKFSSI 248
+ P L II ++S+ F + G Y SK A S
Sbjct: 119 VLPYLREQRSGHIIQISSIGGISAF----------------PMSGIYHASKWALEGMSEA 162
Query: 249 LQKRLPAESGINVVCVSPGIVSTNVA 274
L + + AE GI V V PG ST+ A
Sbjct: 163 LAQEV-AEFGIKVTLVEPGGYSTDWA 187
|
Length = 275 |
| >gnl|CDD|187666 cd09806, type1_17beta-HSD-like_SDR_c, human estrogenic 17beta-hydroxysteroid dehydrogenase type 1 (type 1 17beta-HSD)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 10/152 (6%)
Query: 67 TCIVTGSTSGIGREIARQLAESGA---HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
++TG +SGIG +A +LA + V +R+LK L E +G +E
Sbjct: 2 VVLITGCSSGIGLHLAVRLASDPSKRFKVYATMRDLKKKGRL-----WEAAGALAGGTLE 56
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAP 183
++LD+ SV E R + VL+ NAG+ +G + S+D VN
Sbjct: 57 TLQLDVCDSKSVAAAVERVTER--HVDVLVCNAGVGLLGPLEALSEDAMASVFDVNVFGT 114
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215
+ P + R RI+ +SV G
Sbjct: 115 VRMLQAFLPDMKRRGSGRILVTSSVGGLQGLP 146
|
17beta-hydroxysteroid dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens. This classical SDR subgroup includes human type 1 17beta-HSD, human retinol dehydrogenase 8, zebrafish photoreceptor associated retinol dehydrogenase type 2, and a chicken ovary-specific 17beta-hydroxysteroid dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 258 |
| >gnl|CDD|187587 cd05326, secoisolariciresinol-DH_like_SDR_c, secoisolariciresinol dehydrogenase (secoisolariciresinol-DH)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-10
Identities = 59/217 (27%), Positives = 83/217 (38%), Gaps = 40/217 (18%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMA----VRNLKAANELIQKWQEEWSGKGLPLNIEA 124
I+TG SGIG AR A+ GA VV+A A EL +I
Sbjct: 8 IITGGASGIGEATARLFAKHGARVVIADIDDDAGQAVAAEL------------GDPDISF 55
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI-----FSIGEPQKFSKDGYEEHMQVN 179
+ D+ V + R G L ++ NNAG+ +SI E S + +E + VN
Sbjct: 56 VHCDVTVEADVRAAVDTAVARFGRLDIMFNNAGVLGAPCYSILE---TSLEEFERVLDVN 112
Query: 180 HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
L + +I I++V SV VV G + Y+ SK
Sbjct: 113 VYGAFLGTKHAARVMIPAKKGSIVSVASVA-----------GVVGGLGPHA----YTASK 157
Query: 240 LAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276
A + + L E GI V CVSP V+T +
Sbjct: 158 HAVLGLTRSAATEL-GEHGIRVNCVSPYGVATPLLTA 193
|
Podophyllum secoisolariciresinol-DH is a homo tetrameric, classical SDR that catalyzes the NAD-dependent conversion of (-)-secoisolariciresinol to (-)-matairesinol via a (-)-lactol intermediate. (-)-Matairesinol is an intermediate to various 8'-lignans, including the cancer-preventive mammalian lignan, and those involved in vascular plant defense. This subgroup also includes rice momilactone A synthase which catalyzes the conversion of 3beta-hydroxy-9betaH-pimara-7,15-dien-19,6beta-olide into momilactone A, Arabidopsis ABA2 which during abscisic acid (ABA) biosynthesis, catalyzes the conversion of xanthoxin to abscisic aldehyde and, maize Tasselseed2 which participate in the maize sex determination pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 249 |
| >gnl|CDD|135765 PRK06113, PRK06113, 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 2e-10
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 33/227 (14%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGK--GLPL 120
++ I+TG+ +GIG+EIA A +GA VV++ N AAN ++ + Q+ G+
Sbjct: 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL-GGQAFACRC 67
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSK--DGYEEHMQV 178
+I + + L ++ F+ + +LG + +L+NNAG G P+ F + ++
Sbjct: 68 DITSEQ----ELSALADFALS---KLGKVDILVNNAG---GGGPKPFDMPMADFRRAYEL 117
Query: 179 NHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGS 238
N + LS L+ P + + I+ + S ++ K ++ Y+ S
Sbjct: 118 NVFSFFHLSQLVAPEMEKNGGGVILTITS---------------MAAENKNINMTSYASS 162
Query: 239 KLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQA 283
K A + L E I V ++PG + T+ + + P+I Q
Sbjct: 163 KAAASHLVRNMAFDL-GEKNIRVNGIAPGAILTDALKSVITPEIEQK 208
|
Length = 255 |
| >gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-10
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEW-SGKGLPLNIEAMELD 128
VTG GIGRE AR+LA GAHVV+A NL+AA + + ++ +G+ + A+++D
Sbjct: 419 VTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAV-----ALKMD 473
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFS 160
+ +V G + +++NNAGI +
Sbjct: 474 VTDEQAVKAAFADVALAYGGVDIVVNNAGIAT 505
|
Length = 676 |
| >gnl|CDD|236209 PRK08265, PRK08265, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-10
Identities = 49/213 (23%), Positives = 78/213 (36%), Gaps = 39/213 (18%)
Query: 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPL 120
+ IVTG + IG +AR L +GA V + + + L
Sbjct: 2 IGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAA---------SLGE 52
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNA------GIFSIGEPQKFSKDGYEE 174
+ D+ ++ R R G + +L+N A G+ S S+ +
Sbjct: 53 RARFIATDITDDAAIERAVATVVARFGRVDILVNLACTYLDDGLAS-------SRADWLA 105
Query: 175 HMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG 234
+ VN ++ A+L+ P L RG I+N S+ +GR Y +
Sbjct: 106 ALDVNLVSAAMLAQAAHPHLARGG-GAIVNFTSISAKFA---------QTGRWLYPA--- 152
Query: 235 YSGSKLAQIKFSSILQKRLPAESGINVVCVSPG 267
SK A + + + L A GI V VSPG
Sbjct: 153 ---SKAAIRQLTRSMAMDL-APDGIRVNSVSPG 181
|
Length = 261 |
| >gnl|CDD|181126 PRK07806, PRK07806, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 3e-10
Identities = 44/151 (29%), Positives = 65/151 (43%), Gaps = 15/151 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTGS+ GIG + A+ LA +GAHVV+ R + E G+ A+
Sbjct: 8 TALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRAS-----AVG 62
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
DL +SV + G L L+ NA G + + Y M++N A L
Sbjct: 63 ADLTDEESVAALMDTAREEFGGLDALVLNAS----GGMESGMDEDYA--MRLNRDAQRNL 116
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217
+ P + G SR++ V S H F+ T
Sbjct: 117 ARAALPLMPAG--SRVVFVTS--HQAHFIPT 143
|
Length = 248 |
| >gnl|CDD|187629 cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 4e-10
Identities = 56/241 (23%), Positives = 88/241 (36%), Gaps = 54/241 (22%)
Query: 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
L +VTG SG+G +L GA VV+ E + K + N
Sbjct: 1 KGLVAVVTGGASGLGLATVERLLAQGAKVVILDLPNSPG-ETVAKLGD---------NCR 50
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQK-FSKDGYEEH------- 175
+ +D+ S V + G L +++N AG I K ++K G + H
Sbjct: 51 FVPVDVTSEKDVKAALALAKAKFGRLDIVVNCAG---IAVAAKTYNKKGQQPHSLELFQR 107
Query: 176 -MQVNHLAPALLSILLFPSLIRGSPSR------IINVNSVMHYVGFVDTEDMNVVSGRRK 228
+ VN + + L ++ + P + IIN SV + G +
Sbjct: 108 VINVNLIGTFNVIRLAAGAMGKNEPDQGGERGVIINTASVAAFEGQIGQA---------- 157
Query: 229 YTSLMGYSGSKLAQIKFSSILQKRLP-----AESGINVVCVSPGIVSTNVARDLPKIVQA 283
YS SK I+ LP A GI VV ++PG+ T + LP+ V+
Sbjct: 158 -----AYSASKGG------IVGMTLPIARDLAPQGIRVVTIAPGLFDTPLLAGLPEKVRD 206
Query: 284 A 284
Sbjct: 207 F 207
|
HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 252 |
| >gnl|CDD|183489 PRK12384, PRK12384, sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-10
Identities = 56/203 (27%), Positives = 80/203 (39%), Gaps = 23/203 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+V G +G + LAE G V +A N + A + Q+ E+ G+G
Sbjct: 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEY-GEG---MAYGFG 59
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D S SV+ S + G + +L+ NAGI F ++ +QVN L L
Sbjct: 60 ADATSEQSVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVN-LVGYFL 118
Query: 187 SILLFPSLI--RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
F L+ G RII +NS VG K+ S GYS +K +
Sbjct: 119 CAREFSRLMIRDGIQGRIIQINSKSGKVG-------------SKHNS--GYSAAKFGGVG 163
Query: 245 FSSILQKRLPAESGINVVCVSPG 267
+ L L AE GI V + G
Sbjct: 164 LTQSLALDL-AEYGITVHSLMLG 185
|
Length = 259 |
| >gnl|CDD|187641 cd08936, CR_SDR_c, Porcine peroxisomal carbonyl reductase like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-10
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 27/219 (12%)
Query: 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEE-WSGKGLPL 120
P+ + +VT ST GIG IAR+LA+ GAHVV++ R + + + Q E S G
Sbjct: 7 PLANKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQQNVDRAVATLQGEGLSVTGTVC 66
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSI-GEPQKFSKDGYEEHMQVN 179
++ E R G + +L++NA + G +++ +++ + VN
Sbjct: 67 HVGKAE-------DRERLVATAVNLHGGVDILVSNAAVNPFFGNILDSTEEVWDKILDVN 119
Query: 180 HLAPALLSILLFPSL-IRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGS 238
A AL++ + P + RG S +I V+SV + + L Y+ S
Sbjct: 120 VKATALMTKAVVPEMEKRGGGSVVI-VSSVAAF---------------HPFPGLGPYNVS 163
Query: 239 KLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
K A + + L L A I V C++PG++ T+ + L
Sbjct: 164 KTALLGLTKNLAPEL-APRNIRVNCLAPGLIKTSFSSAL 201
|
This subgroup contains porcine peroxisomal carbonyl reductase and similar proteins. The porcine enzyme efficiently reduces retinals. This subgroup also includes human dehydrogenase/reductase (SDR family) member 4 (DHRS4), and human DHRS4L1. DHRS4 is a peroxisomal enzyme with 3beta-hydroxysteroid dehydrogenase activity; it catalyzes the reduction of 3-keto-C19/C21-steroids into 3beta-hydroxysteroids more efficiently than it does the retinal reduction. The human DHRS4 gene cluster contains DHRS4, DHRS4L2 and DHRS4L1. DHRS4L2 and DHRS4L1 are paralogs of DHRS4, DHRS4L2 being the most recent member. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256 |
| >gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 6e-10
Identities = 58/222 (26%), Positives = 88/222 (39%), Gaps = 29/222 (13%)
Query: 51 ASHLQNPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQ 110
AS Q P PL + I TG GIGR +A + A +G +++ R+ E +K
Sbjct: 256 ASTAQAPSPLAESPRVVAI-TGGARGIGRAVADRFAAAGDRLLIIDRD----AEGAKKLA 310
Query: 111 EEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSK 169
E + L +++ D+ +V R G L VL+NNAGI + +P + S
Sbjct: 311 EALGDEHL-----SVQADITDEAAVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSA 365
Query: 170 DGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKY 229
+ + VN L+ A L+ I+N+ S+ + R
Sbjct: 366 EDFTRVYDVN-LSGAFACARAAARLMSQG-GVIVNLGSIASLLAL---------PPRN-- 412
Query: 230 TSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
Y SK A S L A +GI V V+PG + T
Sbjct: 413 ----AYCASKAAVTMLSRSLACEW-APAGIRVNTVAPGYIET 449
|
Length = 520 |
| >gnl|CDD|131468 TIGR02415, 23BDH, acetoin reductases | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 6e-10
Identities = 55/209 (26%), Positives = 84/209 (40%), Gaps = 29/209 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG GIG+ IA +LA+ G V +A N + A E ++ + G A +
Sbjct: 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQ----AG--GKAVAYK 55
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LD+ D V + + G V++NNAG+ I + +++ ++ VN + L
Sbjct: 56 LDVSDKDQVFSAIDQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVN-VKGVLF 114
Query: 187 SILL----FPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
I F G +IIN S ++G L YS +K A
Sbjct: 115 GIQAAARQFKKQ--GHGGKIINAAS---------------IAGHEGNPILSAYSSTKFAV 157
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVST 271
+ + L A GI V PGIV T
Sbjct: 158 RGLTQTAAQEL-APKGITVNAYCPGIVKT 185
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PMID:11577733) [Energy metabolism, Fermentation]. Length = 254 |
| >gnl|CDD|187642 cd08937, DHB_DH-like_SDR_c, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase (DHB DH)-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 6e-10
Identities = 51/216 (23%), Positives = 83/216 (38%), Gaps = 28/216 (12%)
Query: 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLN 121
+VTG+ GIGR +A +LA GA V++ R +EL+ + E
Sbjct: 1 RFEGKVVVVTGAAQGIGRGVAERLAGEGARVLLVDR-----SELVHEVLAE--ILAAGDA 53
Query: 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNH 180
DL + A R G + VLINN G +P + + ++ E ++ +
Sbjct: 54 AHVHTADLETYAGAQGVVRAAVERFGRVDVLINNVGGTIWAKPYEHYEEEQIEAEIRRS- 112
Query: 181 LAPAL-LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
L P L + P ++ I+NV+S+ T + R Y++ G +
Sbjct: 113 LFPTLWCCRAVLPHMLERQQGVIVNVSSIA-------TRGIY----RIPYSAAKGGVNAL 161
Query: 240 LAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275
A + F A GI V V+PG +
Sbjct: 162 TASLAFEH-------ARDGIRVNAVAPGGTEAPPRK 190
|
DHB DH (aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase) catalyzes the NAD-dependent conversion of 1,2-dihydroxycyclohexa-3,4-diene carboxylate to a catechol. This subgroup also contains Pseudomonas putida F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate dehydrogenase, the second enzyme in the pathway for catabolism of p-cumate catabolism. This subgroup shares the glycine-rich NAD-binding motif of the classical SDRs and shares the same catalytic triad; however, the upstream Asn implicated in cofactor binding or catalysis in other SDRs is generally substituted by a Ser. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 256 |
| >gnl|CDD|187607 cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP]reductase (BKR), subgroup 2, classical (c) SDR | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 8e-10
Identities = 50/217 (23%), Positives = 82/217 (37%), Gaps = 42/217 (19%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
+VTG++ G+G IAR A GA VV+ R+ ++A + + E A+
Sbjct: 2 VVLVTGASRGLGAAIARSFAREGARVVVNYYRSTESAEAVAAEAGE---------RAIAI 52
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHM--------- 176
+ D+ D V E GP+ ++NNA I F D +
Sbjct: 53 QADVRDRDQVQAMIEEAKNHFGPVDTIVNNALI-----DFPFDPDQRKTFDTIDWEDYQQ 107
Query: 177 QVNHLAPALLSIL--LFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG 234
Q+ L++L + P R+IN+ + + V D
Sbjct: 108 QLEGAVKGALNLLQAVLPDFKERGSGRVINIGTNLFQNPVVPYHD--------------- 152
Query: 235 YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
Y+ +K A + F+ + K L GI V VS G++
Sbjct: 153 YTTAKAALLGFTRNMAKEL-GPYGITVNMVSGGLLKV 188
|
This subgroup includes Rhizobium sp. NGR234 FabG1. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 246 |
| >gnl|CDD|236389 PRK09134, PRK09134, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-09
Identities = 39/140 (27%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHV-VMAVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
+VTG+ IGR IA LA G V V R+ A L E G A+
Sbjct: 11 AALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALA----AEIRALGR--RAVAL 64
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
+ DL V + LGP+ +L+NNA +F F++ ++ HM N AP +
Sbjct: 65 QADLADEAEVRALVARASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFV 124
Query: 186 LSILLFPSLIRGSPSRIINV 205
L+ +L + ++N+
Sbjct: 125 LAQAFARALPADARGLVVNM 144
|
Length = 258 |
| >gnl|CDD|236207 PRK08261, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 61/206 (29%), Positives = 93/206 (45%), Gaps = 31/206 (15%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+ GIG IA LA GAHVV ++ AA E + G L L+I A
Sbjct: 214 LVTGAARGIGAAIAEVLARDGAHVV--CLDVPAAGEALAAVANRVGGTALALDITA---- 267
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIF---SIGEPQKFSKDGYEEHMQVNHLAPAL 185
D+ R +E R G L ++++NAGI ++ + ++ + VN LAP
Sbjct: 268 ---PDAPARIAEHLAERHGGLDIVVHNAGITRDKTLA---NMDEARWDSVLAVNLLAPLR 321
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
++ L + G RI+ V+S ++ ++G R T+ Y+ SK I
Sbjct: 322 ITEALLAAGALGDGGRIVGVSS------------ISGIAGNRGQTN---YAASKAGVIGL 366
Query: 246 SSILQKRLPAESGINVVCVSPGIVST 271
L L AE GI + V+PG + T
Sbjct: 367 VQALAPLL-AERGITINAVAPGFIET 391
|
Length = 450 |
| >gnl|CDD|187635 cd08930, SDR_c8, classical (c) SDR, subgroup 8 | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-09
Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 22/211 (10%)
Query: 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
D ++TG+ IG+ + L +GA +++A N A +L ++ + + +
Sbjct: 1 EDKIILITGAAGLIGKAFCKALLSAGARLILADINAPALEQLKEELTNLYKNR-----VI 55
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKF---SKDGYEEHMQVNH 180
A+ELD+ S +S+ E++ + G + +LINNA +F + + E + VN
Sbjct: 56 ALELDITSKESIKELIESYLEKFGRIDILINNAYPSPKVWGSRFEEFPYEQWNEVLNVN- 114
Query: 181 LAPALLSILLFPSLI----RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYS 236
L A L F L +GS IIN+ S+ + D + + Y+ + YS
Sbjct: 115 LGGAFLCSQAFIKLFKKQGKGS---IINIASIYGVIA----PDFRIYENTQMYSPVE-YS 166
Query: 237 GSKLAQIKFSSILQKRLPAESGINVVCVSPG 267
K I + L K A++GI V +SPG
Sbjct: 167 VIKAGIIHLTKYLAKYY-ADTGIRVNAISPG 196
|
This subgroup has a fairly well conserved active site tetrad and domain size of the classical SDRs, but has an atypical NAD-binding motif ([ST]G[GA]XGXXG). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|180823 PRK07074, PRK07074, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-09
Identities = 43/207 (20%), Positives = 72/207 (34%), Gaps = 29/207 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTG+ GIG+ +AR+ +G V+ + A + +
Sbjct: 4 TALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDA--------RFVPVA 55
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
DL S+ GP+ VL+ NAG + + +N A L
Sbjct: 56 CDLTDAASLAAALANAAAERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLC 115
Query: 187 SILLFPSLIRGSPSRIINVNSV--MHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
+ +++ S ++N+ SV M +G YS +K I
Sbjct: 116 VEAVLEGMLKRSRGAVVNIGSVNGMAALGHP------------------AYSAAKAGLIH 157
Query: 245 FSSILQKRLPAESGINVVCVSPGIVST 271
++ +L GI V+PG V T
Sbjct: 158 YTKLLAVEY-GRFGIRANAVAPGTVKT 183
|
Length = 257 |
| >gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-09
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHV-VMAVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
IVT S SGIG+ A LA+ G + + + + A E ++ + G E
Sbjct: 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSH--GV----RAEIR 57
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQ---VNHLA 182
+LDL L + + RLG + VL+NNAG F ++E + V+
Sbjct: 58 QLDLSDLPEGAQALDKLIQRLGRIDVLVNNAG---AMTKAPFLDMDFDEWRKIFTVDVDG 114
Query: 183 PALLSILLFPSLIR-GSPSRIINVNSV 208
L S + +++ G RIIN+ SV
Sbjct: 115 AFLCSQIAARHMVKQGQGGRIINITSV 141
|
Length = 256 |
| >gnl|CDD|183719 PRK12747, PRK12747, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (137), Expect = 2e-09
Identities = 62/216 (28%), Positives = 95/216 (43%), Gaps = 31/216 (14%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLK-AANELIQKWQEEWSGKGLPLNIEAMEL 127
+VTG++ GIGR IA++LA GA V + N K A E + + Q S G +I A
Sbjct: 8 LVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQ---SNGGSAFSIGA--- 61
Query: 128 DLLSLDSVVRFSEAWNGRL------GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHL 181
+L SL V + + L +LINNAGI ++ ++ ++ + VN
Sbjct: 62 NLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAK 121
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
AP + L SRIIN++S + D + YS +K A
Sbjct: 122 APFFIIQQALSRL--RDNSRIINISSAATRISLPD---------------FIAYSMTKGA 164
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
+ L K+L A GI V + PG + T++ +L
Sbjct: 165 INTMTFTLAKQLGAR-GITVNAILPGFIKTDMNAEL 199
|
Length = 252 |
| >gnl|CDD|187613 cd05355, SDR_c1, classical (c) SDR, subgroup 1 | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-09
Identities = 61/219 (27%), Positives = 87/219 (39%), Gaps = 43/219 (19%)
Query: 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK----AANELIQKWQEEWSGKGLPL 120
++TG SGIGR +A A GA V + L A E +K EE K L
Sbjct: 26 GKKALITGGDSGIGRAVAIAFAREGADVAINY--LPEEEDDAEE-TKKLIEEEGRKCL-- 80
Query: 121 NIEAMELDLLSLD---SVVRFSEAWNGRLGPLHVLINNAG----IFSIGEPQKFSKDGYE 173
+ DL +V+ G L +L+NNA SI + + + E
Sbjct: 81 ---LIPGDLGDESFCRDLVKEV---VKEFGKLDILVNNAAYQHPQESIED---ITTEQLE 131
Query: 174 EHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLM 233
+ + N + L+ P L +G S IIN SV Y G L+
Sbjct: 132 KTFRTNIFSMFYLTKAALPHLKKG--SSIINTTSVTAYKGSP---------------HLL 174
Query: 234 GYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272
Y+ +K A + F+ L +L AE GI V V+PG + T
Sbjct: 175 DYAATKGAIVAFTRGLSLQL-AEKGIRVNAVAPGPIWTP 212
|
These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 270 |
| >gnl|CDD|171531 PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (136), Expect = 2e-09
Identities = 55/205 (26%), Positives = 99/205 (48%), Gaps = 25/205 (12%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
I+TG +G+G+ +A LA++GA +V + A E Q E G+ I A +
Sbjct: 12 IITGCNTGLGQGMAIGLAKAGADIVGV--GVAEAPETQA--QVEALGRKFHF-ITADLIQ 66
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+DS+V S+A +G + +LINNAGI + +F +++ + +N LS
Sbjct: 67 QKDIDSIV--SQAVE-VMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQ 123
Query: 189 LLFPSLIR-GSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSS 247
+ ++ G+ +IIN+ S++ + G G R + Y+ SK A + +
Sbjct: 124 AVAKQFVKQGNGGKIINIASMLSFQG-----------GIR----VPSYTASKSAVMGLTR 168
Query: 248 ILQKRLPAESGINVVCVSPGIVSTN 272
L L ++ INV ++PG ++T+
Sbjct: 169 ALATEL-SQYNINVNAIAPGYMATD 192
|
Length = 251 |
| >gnl|CDD|168186 PRK05693, PRK05693, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 54/209 (25%), Positives = 82/209 (39%), Gaps = 29/209 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG +SGIGR +A +G V R + L A++
Sbjct: 3 VVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAA------------GFTAVQ 50
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LD+ ++ R +E G L VLINNAG ++G + + N A +
Sbjct: 51 LDVNDGAALARLAEELEAEHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGV 110
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ LFP L+R S ++N+ S VSG Y SK A S
Sbjct: 111 TRALFP-LLRRSRGLVVNIGS---------------VSGVLVTPFAGAYCASKAAVHALS 154
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVAR 275
L+ L A G+ V+ V PG +++ A
Sbjct: 155 DALRLEL-APFGVQVMEVQPGAIASQFAS 182
|
Length = 274 |
| >gnl|CDD|235816 PRK06500, PRK06500, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 3e-09
Identities = 53/206 (25%), Positives = 86/206 (41%), Gaps = 29/206 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T ++TG TSGIG E ARQ GA V + R+ + ++ + E L + +A +
Sbjct: 8 TALITGGTSGIGLETARQFLAEGARVAITGRDPAS----LEAARAELGESALVIRADAGD 63
Query: 127 L-DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
+ +L + EA+ G L + NAG+ + + + ++ N P
Sbjct: 64 VAAQKALAQALA--EAF----GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYF 117
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
L L P L + S ++N S+ ++G +S+ Y+ SK A +
Sbjct: 118 LIQALLPLLANPA-SIVLN-GSINAHIGMP-------------NSSV--YAASKAALLSL 160
Query: 246 SSILQKRLPAESGINVVCVSPGIVST 271
+ L L GI V VSPG V T
Sbjct: 161 AKTLSGEL-LPRGIRVNAVSPGPVQT 185
|
Length = 249 |
| >gnl|CDD|187638 cd08933, RDH_SDR_c, retinal dehydrogenase-like, classical (c) SDR | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 4e-09
Identities = 60/207 (28%), Positives = 93/207 (44%), Gaps = 29/207 (14%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSG--KGLPLNIEAME 126
IVTG + GIGR I R E+GA VV R A L + G K +P ++ E
Sbjct: 13 IVTGGSRGIGRGIVRAFVENGAKVVFCARGEAAGQALESELNRAGPGSCKFVPCDVTKEE 72
Query: 127 LDLLSLDSV-VRFSEAWNGRLGPLHVLINNAGIFSIGE-PQKFSKDGYEEHMQVNHLAPA 184
D+ +L SV V R G + L+NNAG + + S + + + +N ++
Sbjct: 73 -DIKTLISVTVE-------RFGRIDCLVNNAGWHPPHQTTDETSAQEFRDLLNLNLISYF 124
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
L S P L R S IIN++S+ VG + G+++ + G+ A K
Sbjct: 125 LASKYALPHL-RKSQGNIINLSSL---VGSI---------GQKQAAPYVATKGAITAMTK 171
Query: 245 FSSILQKRLPAESGINVVCVSPGIVST 271
++ + R G+ V C+SPG + T
Sbjct: 172 ALAVDESRY----GVRVNCISPGNIWT 194
|
These classical SDRs includes members identified as retinol dehydrogenases, which convert retinol to retinal, a property that overlaps with 17betaHSD activity. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the short-chain dehydrogenases/reductase family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 261 |
| >gnl|CDD|236145 PRK08063, PRK08063, enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-09
Identities = 53/213 (24%), Positives = 88/213 (41%), Gaps = 27/213 (12%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMEL 127
+VTGS+ GIG+ IA +LAE G + + R+ KAA E EE G A++
Sbjct: 8 LVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEET----AEEIEALG--RKALAVKA 61
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLS 187
++ ++ + + G L V +NNA + + + ++ M +N A +
Sbjct: 62 NVGDVEKIKEMFAQIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCA 121
Query: 188 ILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR--RKYTSLMGYSGSKLAQIKF 245
+ + +II+++S+ S R YT++ SK A
Sbjct: 122 QEAAKLMEKVGGGKIISLSSLG--------------SIRYLENYTTV---GVSKAALEAL 164
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
+ L L A GI V VS G V T+ + P
Sbjct: 165 TRYLAVEL-APKGIAVNAVSGGAVDTDALKHFP 196
|
Length = 250 |
| >gnl|CDD|180802 PRK07035, PRK07035, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 5e-09
Identities = 64/236 (27%), Positives = 95/236 (40%), Gaps = 37/236 (15%)
Query: 65 DLT---CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLN 121
DLT +VTG++ GIG IA+ LA+ GAHV+++ R L + GK
Sbjct: 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA-GGKA---- 59
Query: 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI---FSIGEPQKFSKDGYEEHMQV 178
EA+ + ++ + R G L +L+NNA F G +++ + V
Sbjct: 60 -EALACHIGEMEQIDALFAHIRERHGRLDILVNNAAANPYF--GHILDTDLGAFQKTVDV 116
Query: 179 NHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS-GRRKYTSLMG-YS 236
N +S+ + I+NV SV N VS G + G YS
Sbjct: 117 NIRGYFFMSVEAGKLMKEQGGGSIVNVASV------------NGVSPGDFQ-----GIYS 159
Query: 237 GSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIP 289
+K A I + K A GI V + PG+ T A L I++ A IP
Sbjct: 160 ITKAAVISMTKAFAKEC-APFGIRVNALLPGLTDTKFASALFKNDAILKQALAHIP 214
|
Length = 252 |
| >gnl|CDD|181077 PRK07677, PRK07677, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 6e-09
Identities = 28/94 (29%), Positives = 52/94 (55%), Gaps = 14/94 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRN----LKAANELIQKWQEEWSGKGLPLNI 122
I+TG +SG+G+ +A++ AE GA+VV+ R +A E+ E++ G+ L +
Sbjct: 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEI-----EQFPGQVLTV-- 55
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNA 156
++D+ + + V + E + + G + LINNA
Sbjct: 56 ---QMDVRNPEDVQKMVEQIDEKFGRIDALINNA 86
|
Length = 252 |
| >gnl|CDD|187647 cd08943, R1PA_ADH_SDR_c, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 7e-09
Identities = 46/204 (22%), Positives = 77/204 (37%), Gaps = 23/204 (11%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG SGIG IA++LA GA VV+A ++ + + L + D
Sbjct: 5 LVTGGASGIGLAIAKRLAAEGAAVVVA--DIDPEIAEKVAEAAQGGPRALGVQC-----D 57
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ S V E G L ++++NAGI + + S + + M +N L+S
Sbjct: 58 VTSEAQVQSAFEQAVLEFGGLDIVVSNAGIATSSPIAETSLEDWNRSMDINLTGHFLVSR 117
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
F + + + + N V+ + YS +K A+ +
Sbjct: 118 EAFRIMKSQ------GIGGNIVFNA-----SKNAVAPGPNAAA---YSAAKAAEAHLARC 163
Query: 249 LQKRLPAESGINVVCVSP-GIVST 271
L E GI V V+P +
Sbjct: 164 LALEG-GEDGIRVNTVNPDAVFRG 186
|
This family has bifunctional proteins with an N-terminal aldolase and a C-terminal classical SDR domain. One member is identified as a rhamnulose-1-phosphate aldolase/alcohol dehydrogenase. The SDR domain has a canonical SDR glycine-rich NAD(P) binding motif and a match to the characteristic active site triad. However, it lacks an upstream active site Asn typical of SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|187599 cd05340, Ycik_SDR_c, Escherichia coli K-12 YCIK-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 8e-09
Identities = 48/210 (22%), Positives = 88/210 (41%), Gaps = 20/210 (9%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
+ND +VTG++ GIGRE A A GA V++ RN + ++ EE G P
Sbjct: 2 LNDRIILVTGASDGIGREAALTYARYGATVILLGRNEEKLRQVADHINEE--GGRQPQ-W 58
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG-YEEHMQVNHL 181
++L + ++ + ++ L +++NAG+ P +++ QVN
Sbjct: 59 FILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPLSEQNPQVWQDVXQVNVN 118
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
A +L+ L P L++ ++ +S + GR+ + Y+ SK A
Sbjct: 119 ATFMLTQALLPLLLKSDAGSLVFTSSSV---------------GRQGRANWGAYAVSKFA 163
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVST 271
+L + + V C++PG T
Sbjct: 164 TEGLXQVLADEYQQRN-LRVNCINPGGTRT 192
|
Escherichia coli K-12 YCIK and related proteins have a canonical classical SDR nucleotide-binding motif and active site tetrad. They are predicted oxoacyl-(acyl carrier protein/ACP) reductases. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 236 |
| >gnl|CDD|180773 PRK06949, PRK06949, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 8e-09
Identities = 50/214 (23%), Positives = 97/214 (45%), Gaps = 32/214 (14%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMEL- 127
+VTG++SG+G A+ LA++GA VV+A R ++ EL + E +G ++ ++++
Sbjct: 13 LVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKEL----RAEIEAEGGAAHVVSLDVT 68
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLS 187
D S+ + V +E G + +L+NN+G+ + + + ++ N ++
Sbjct: 69 DYQSIKAAVAHAET---EAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVA 125
Query: 188 ILLFPSLI---RGSPS-----RIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
+ +I +G+ + RIIN+ S V+G R + Y SK
Sbjct: 126 QEVAKRMIARAKGAGNTKPGGRIINIAS---------------VAGLRVLPQIGLYCMSK 170
Query: 240 LAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273
A + + + GINV + PG + T +
Sbjct: 171 AAVVHMTRAMALEW-GRHGINVNAICPGYIDTEI 203
|
Length = 258 |
| >gnl|CDD|180408 PRK06114, PRK06114, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 9e-09
Identities = 54/211 (25%), Positives = 83/211 (39%), Gaps = 35/211 (16%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVR----NLKAANELIQKWQEEWSGKGLPLNIEA 124
VTG+ SGIG+ IA LA++GA V + L E I+ + + I A
Sbjct: 12 FVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIE------AAGRRAIQIAA 65
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPA 184
L + V +EA LG L + +N AGI + ++ ++ ++ M +N L
Sbjct: 66 DVTSKADLRAAVARTEA---ELGALTLAVNAAGIANANPAEEMEEEQWQTVMDIN-LTGV 121
Query: 185 LLSILLFPSLI----RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
LS + GS I+N+ S+ G + + Y+ SK
Sbjct: 122 FLSCQAEARAMLENGGGS---IVNIASMS---GIIVNRGLLQAH----------YNASKA 165
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVST 271
I S L GI V +SPG +T
Sbjct: 166 GVIHLSKSLAMEW-VGRGIRVNSISPGYTAT 195
|
Length = 254 |
| >gnl|CDD|182051 PRK09730, PRK09730, putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 9e-09
Identities = 61/234 (26%), Positives = 91/234 (38%), Gaps = 64/234 (27%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHV-VMAVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
+VTG + GIGR A LA+ G V V +NL AA E++ +G G ++A
Sbjct: 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVN--LITQAG-GKAFVLQA- 58
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI-FSIGEPQKFSKD-----------GY- 172
D+ + VV A + PL L+NNAGI F+ + + + GY
Sbjct: 59 --DISDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYF 116
Query: 173 ------EEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG----FVDTEDMNV 222
+ M + H GS I+NV+S +G +VD
Sbjct: 117 LCCREAVKRMALKH---------------GGSGGAIVNVSSAASRLGAPGEYVD------ 155
Query: 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276
Y+ SK A ++ L + A+ GI V CV PG + T +
Sbjct: 156 ------------YAASKGAIDTLTTGLSLEVAAQ-GIRVNCVRPGFIYTEMHAS 196
|
Length = 247 |
| >gnl|CDD|183797 PRK12859, PRK12859, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-08
Identities = 52/210 (24%), Positives = 88/210 (41%), Gaps = 23/210 (10%)
Query: 69 IVTGST--SGIGREIARQLAESGAHVVMAV-----RNLKAANELIQKWQEEWSGKGLPLN 121
+VTG + GIG I ++LAE+GA + + + + ++ Q + +
Sbjct: 10 VVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVK 69
Query: 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHL 181
+ +MELDL D+ +LG H+L+NNA + + + + ++H VN
Sbjct: 70 VSSMELDLTQNDAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVR 129
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
A LLS + S RIIN+ S + + G + Y+ +K A
Sbjct: 130 ATTLLSSQFARGFDKKSGGRIINMTS---------GQFQGPMVGE------LAYAATKGA 174
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVST 271
+S L + A GI V ++PG T
Sbjct: 175 IDALTSSLAAEV-AHLGITVNAINPGPTDT 203
|
Length = 256 |
| >gnl|CDD|180446 PRK06180, PRK06180, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 56/217 (25%), Positives = 83/217 (38%), Gaps = 43/217 (19%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T ++TG +SG GR +A+ +G VV VR+ A + P A
Sbjct: 6 TWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFE---------ALHPDRALARL 56
Query: 127 LDLLSLDS---VVRFSEAWNGRLGPLHVLINNAGI--FSIGEPQKFSKDGYEEHM----Q 177
LD+ D+ VV +EA GP+ VL+NNAG E + M +
Sbjct: 57 LDVTDFDAIDAVVADAEA---TFGPIDVLVNNAGYGHEGAIE------ESPLAEMRRQFE 107
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
VN ++ + P + I+N+ S+ + + Y G
Sbjct: 108 VNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITM---------------PGIGYYCG 152
Query: 238 SKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274
SK A S L K + A GI+V V PG T+ A
Sbjct: 153 SKFALEGISESLAKEV-APFGIHVTAVEPGSFRTDWA 188
|
Length = 277 |
| >gnl|CDD|187645 cd08941, 3KS_SDR_c, 3-keto steroid reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 57/244 (23%), Positives = 89/244 (36%), Gaps = 48/244 (19%)
Query: 69 IVTGSTSGIGREIARQL-----AESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
+VTG+ SG+G I +L +++A RNL+ A + + +
Sbjct: 5 LVTGANSGLGLAICERLLAEDDENPELTLILACRNLQRAEAACRALLASHPDARVVFDYV 64
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI--------------------FSIGE 163
+DL ++ SV ++ R L L NAGI F++
Sbjct: 65 --LVDLSNMVSVFAAAKELKKRYPRLDYLYLNAGIMPNPGIDWIGAIKEVLTNPLFAVTN 122
Query: 164 P-------------QKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVM 209
P K ++DG E Q N L L P L R S+II +S+
Sbjct: 123 PTYKIQAEGLLSQGDKATEDGLGEVFQTNVFGHYYLIRELEPLLCRSDGGSQIIWTSSLN 182
Query: 210 HYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIV 269
+ ED+ + G YS SK S L ++ + G+ V PGI
Sbjct: 183 ASPKYFSLEDIQHLKGPAP------YSSSKYLVDLLSLALNRKF-NKLGVYSYVVHPGIC 235
Query: 270 STNV 273
+TN+
Sbjct: 236 TTNL 239
|
3-keto steroid reductase (in concert with other enzymes) catalyzes NADP-dependent sterol C-4 demethylation, as part of steroid biosynthesis. 3-keto reductase is a classical SDR, with a well conserved canonical active site tetrad and fairly well conserved characteristic NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 290 |
| >gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 12/101 (11%)
Query: 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN---LKAA-NELIQKWQEEWSGK 116
+ +VTG +SGIG L E+GA V + R+ L +A L +K+
Sbjct: 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGA---- 59
Query: 117 GLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG 157
+ A D+L V F+ A R G + +L+NNAG
Sbjct: 60 ----RLLAARCDVLDEADVAAFAAAVEARFGGVDMLVNNAG 96
|
Length = 265 |
| >gnl|CDD|169390 PRK08340, PRK08340, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-08
Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 14/145 (9%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VT S+ GIG +AR+L + GA VV++ RN + ++K +E G + A++ D
Sbjct: 4 LVTASSRGIGFNVARELLKKGARVVISSRNEEN----LEKALKELKEYG---EVYAVKAD 56
Query: 129 LLSLDSVVRF-SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHL---APA 184
L D + EAW LG + L+ NAG EP + GY + ++ L AP
Sbjct: 57 LSDKDDLKNLVKEAWEL-LGGIDALVWNAGNVRC-EPCMLHEAGYSDWLEAALLHLVAPG 114
Query: 185 LLSILLFPS-LIRGSPSRIINVNSV 208
L+ LL + L + ++ ++SV
Sbjct: 115 YLTTLLIQAWLEKKMKGVLVYLSSV 139
|
Length = 259 |
| >gnl|CDD|180761 PRK06935, PRK06935, 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-08
Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 11/149 (7%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAV--RNLKAANELIQKWQEEWSGKGLPLNIEA 124
IVTG +G+G+ A LA++GA +++ N LI+K G+ +
Sbjct: 17 VAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEK-----EGR----KVTF 67
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPA 184
+++DL +S + + G + +L+NNAG ++ + + M +N +
Sbjct: 68 VQVDLTKPESAEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVY 127
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYVG 213
LS + + + +IIN+ S++ + G
Sbjct: 128 HLSQAVAKVMAKQGSGKIINIASMLSFQG 156
|
Length = 258 |
| >gnl|CDD|235794 PRK06398, PRK06398, aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-08
Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 17/148 (11%)
Query: 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124
D IVTG + GIG+ + +L E G++V+ + N+ ++
Sbjct: 6 DKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSYND-----------------VDY 48
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPA 184
++D+ + + V++ + + G + +L+NNAGI S G +D ++ + VN
Sbjct: 49 FKVDVSNKEQVIKGIDYVISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIF 108
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYV 212
L+S P +++ IIN+ SV +
Sbjct: 109 LMSKYTIPYMLKQDKGVIINIASVQSFA 136
|
Length = 258 |
| >gnl|CDD|214833 smart00822, PKS_KR, This enzymatic domain is part of bacterial polyketide synthases | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 4e-08
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 67 TCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
T ++TG G+GR +AR LAE GA +V+ R+ A E G + + A
Sbjct: 2 TYLITGGLGGLGRALARWLAERGARRLVLLSRSGPDAPGA-AALLAELEAAGARVTVVAC 60
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI 158
D+ D++ A GPL +I+ AG+
Sbjct: 61 --DVADRDALAAVLAAIPAVEGPLTGVIHAAGV 91
|
It catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 180 |
| >gnl|CDD|180462 PRK06198, PRK06198, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-08
Identities = 41/148 (27%), Positives = 63/148 (42%), Gaps = 10/148 (6%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAV-RNLKAANELIQKWQEEWSGKGLP-LNIEAME 126
+VTG T G+G IAR AE GA ++ RN + E G + ++A
Sbjct: 10 LVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQ----AAELEALGAKAVFVQA-- 63
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
DL ++ R A + G L L+N AG+ G S + ++ H VN AP L
Sbjct: 64 -DLSDVEDCRRVVAAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFL 122
Query: 187 SILLFPSLI-RGSPSRIINVNSVMHYVG 213
+ R + I+N+ S+ + G
Sbjct: 123 MQEAIKLMRRRKAEGTIVNIGSMSAHGG 150
|
Length = 260 |
| >gnl|CDD|181225 PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-08
Identities = 39/145 (26%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
++TGS GIG +A LAE GA +++ + A + K ++E + A +
Sbjct: 13 LITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE------GIKAHAAPFN 66
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ V E +GP+ VLINNAGI +F + + + + VN A L+S
Sbjct: 67 VTHKQEVEAAIEHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQ 126
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVG 213
+ +++ +IIN+ S+ +G
Sbjct: 127 AVARYMVKRQAGKIINICSMQSELG 151
|
Length = 254 |
| >gnl|CDD|181762 PRK09291, PRK09291, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-08
Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 32/207 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T ++TG+ SG GRE+A +LA G +V+ V+ L + E + +GL L +E +
Sbjct: 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTAL----RAEAARRGLALRVE--K 57
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LDL + +E W+ + VL+NNAGI G + E + N P L
Sbjct: 58 LDLTDAIDRAQAAE-WD-----VDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLEL 111
Query: 187 SILLFPSLIRGSPSRIINVNSV--MHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
+ ++ +++ +S+ + F Y SK A
Sbjct: 112 TQGFVRKMVARGKGKVVFTSSMAGLITGPFTGA-----------------YCASKHALEA 154
Query: 245 FSSILQKRLPAESGINVVCVSPGIVST 271
+ + L GI V V+PG T
Sbjct: 155 IAEAMHAEL-KPFGIQVATVNPGPYLT 180
|
Length = 257 |
| >gnl|CDD|236399 PRK09186, PRK09186, flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-08
Identities = 58/235 (24%), Positives = 99/235 (42%), Gaps = 37/235 (15%)
Query: 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
T ++TG+ IG + + + E+G V+ A + +A NEL++ +E+ K +
Sbjct: 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSK----KLS 58
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKF---SKDGYEEHMQVNH 180
+ELD+ +S+ F + G + +N A + +KF S D + E++ H
Sbjct: 59 LVELDITDQESLEEFLSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLS-LH 117
Query: 181 LAPALLSILLFPS--LIRGSPSRIINVNSVM--------HYVGFVDTEDMNVVSGRRKYT 230
L + L F +G + ++N++S+ Y G T M T
Sbjct: 118 LGSSFLFSQQFAKYFKKQGGGN-LVNISSIYGVVAPKFEIYEG---TS-M---------T 163
Query: 231 SLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
S + Y+ K I + L K +S I V CVSPG + N P+ AY
Sbjct: 164 SPVEYAAIKAGIIHLTKYLAKYF-KDSNIRVNCVSPGGILDN----QPEAFLNAY 213
|
Length = 256 |
| >gnl|CDD|181113 PRK07775, PRK07775, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 6e-08
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 15/131 (11%)
Query: 57 PLPLP---PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEW 113
P P P +V G++SGIG A +LA +G V + R ++ EL+ K + +
Sbjct: 4 FEPHPDRRPA-----LVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRAD- 57
Query: 114 SGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYE 173
G+ + A LD+ DSV F LG + VL++ AG G+ + S + +E
Sbjct: 58 GGEAV-----AFPLDVTDPDSVKSFVAQAEEALGEIEVLVSGAGDTYFGKLHEISTEQFE 112
Query: 174 EHMQVNHLAPA 184
+Q+ HL A
Sbjct: 113 SQVQI-HLVGA 122
|
Length = 274 |
| >gnl|CDD|187596 cd05337, BKR_1_SDR_c, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-08
Identities = 49/214 (22%), Positives = 84/214 (39%), Gaps = 31/214 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHV-VMAVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
IVTG++ GIGR IA +LA G + + + + A E++ +
Sbjct: 3 VAIVTGASRGIGRAIATELAARGFDIAINDLPDDDQATEVVAEVLAAGR------RAIYF 56
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHLAP 183
+ D+ L + G L L+NNAGI G+ ++D ++ + +N P
Sbjct: 57 QADIGELSDHEALLDQAWEDFGRLDCLVNNAGIAVRPRGDLLDLTEDSFDRLIAINLRGP 116
Query: 184 ALLS------ILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
L+ ++ P G II V S+ Y+ + + +
Sbjct: 117 FFLTQAVARRMVEQPDRFDGPHRSIIFVTSINAYLVSPNRGEYCI--------------- 161
Query: 238 SKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
SK + +L RL A+ GI V + PG++ T
Sbjct: 162 SKAGLSMATRLLAYRL-ADEGIAVHEIRPGLIHT 194
|
This subgroup includes Escherichia coli CFT073 FabG. The Escherichai coli K12 BKR, FabG, belongs to a different subgroup. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet) NAD(P)(H) binding region and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H) binding pattern: TGxxxGxG in classical SDRs. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P) binding motif and an altered active site motif (YXXXN). Fungal type type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P) binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr-151 and Lys-155, and well as Asn-111 (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 255 |
| >gnl|CDD|181349 PRK08278, PRK08278, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-07
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 21/130 (16%)
Query: 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR------NLK-----AANELIQKW 109
++ T +TG++ GIG IA + A GA++V+A + L AA E+
Sbjct: 2 MSLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEI---- 57
Query: 110 QEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSK 169
E G+ LPL D+ D V R G + + +NNA ++ +
Sbjct: 58 -EAAGGQALPL-----VGDVRDEDQVAAAVAKAVERFGGIDICVNNASAINLTGTEDTPM 111
Query: 170 DGYEEHMQVN 179
++ Q+N
Sbjct: 112 KRFDLMQQIN 121
|
Length = 273 |
| >gnl|CDD|236210 PRK08267, PRK08267, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 56/226 (24%), Positives = 68/226 (30%), Gaps = 45/226 (19%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL 129
+TG+ SGIGR A A G V N L + N LD
Sbjct: 6 ITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAG--------NAWTGALD- 56
Query: 130 LSLDSVVRFSEAWNGRL--------GPLHVLINNAGIFSIGEPQKFSKDGYEEHM---QV 178
V AW+ L G L VL NNAGI G F E H +
Sbjct: 57 ------VTDRAAWDAALADFAAATGGRLDVLFNNAGILRGG---PFEDIPLEAHDRVIDI 107
Query: 179 NHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGS 238
N + P L +R+IN +S G L YS +
Sbjct: 108 NVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQPG---------------LAVYSAT 152
Query: 239 KLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAA 284
K A + L GI V V P V T + V A
Sbjct: 153 KFAVRGLTEALDLEW-RRHGIRVADVMPLFVDTAMLDGTSNEVDAG 197
|
Length = 260 |
| >gnl|CDD|235713 PRK06139, PRK06139, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 52/216 (24%), Positives = 89/216 (41%), Gaps = 33/216 (15%)
Query: 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLN 121
P++ ++TG++SGIG+ A A GA +V+A R+ +A + ++ + L
Sbjct: 4 PLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA------LGAE 57
Query: 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQV--- 178
+ + D+ D V + G + V +NN G+ ++G +F + E H QV
Sbjct: 58 VLVVPTDVTDADQVKALATQAASFGGRIDVWVNNVGVGAVG---RFEETPIEAHEQVIQT 114
Query: 179 ---NHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGY 235
++ A ++ +F G IN+ S+ GF Y + Y
Sbjct: 115 NLIGYMRDAHAALPIFKKQGHGI---FINMISLG---GFAAQ----------PYAA--AY 156
Query: 236 SGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
S SK FS L+ L I+V V P + T
Sbjct: 157 SASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDT 192
|
Length = 330 |
| >gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 63/232 (27%), Positives = 90/232 (38%), Gaps = 58/232 (25%)
Query: 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
N I+TG++SGIGR A+ A GA VV+ R ++L+ + I
Sbjct: 5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAE-------------IR 51
Query: 124 AMELDLLSLDSVVRFSEAWNGRL--------GPLHVLINNAGIF-SIGEPQKFSKDGYEE 174
A + ++L VR EA+ L G L + NNAG +G + S +G+ E
Sbjct: 52 AEGGEAVALAGDVR-DEAYAKALVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRE 110
Query: 175 HMQVN---------HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225
+ N H PA+L+ RG S I V H GF G
Sbjct: 111 TLATNLTSAFLGAKHQIPAMLA--------RGGGSLIFTSTFVGHTAGF---------PG 153
Query: 226 RRKYTSLMG-YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276
M Y+ SK I + +L A+ GI V + PG T + R
Sbjct: 154 -------MAAYAASKAGLIGLTQVLAAEYGAQ-GIRVNALLPGGTDTPMGRA 197
|
Length = 254 |
| >gnl|CDD|181159 PRK07890, PRK07890, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 51/210 (24%), Positives = 81/210 (38%), Gaps = 36/210 (17%)
Query: 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVR---NL-KAANELIQKWQEEWSGKGLPL 120
+V+G G+GR +A + A +GA VV+A R L + A E+ + L
Sbjct: 5 GKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL-----GRRAL-- 57
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSK---DGYEEHMQ 177
A+ D+ D R G + L+NNA F + + + + ++
Sbjct: 58 ---AVPTDITDEDQCANLVALALERFGRVDALVNNA--FRVPSMKPLADADFAHWRAVIE 112
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
+N L L+ P+L S I+ +NS M + + KY Y
Sbjct: 113 LNVLGTLRLTQAFTPALAESGGS-IVMINS------------MVLRHSQPKYG---AYKM 156
Query: 238 SKLAQIKFSSILQKRLPAESGINVVCVSPG 267
+K A + S L L GI V V+PG
Sbjct: 157 AKGALLAASQSLATEL-GPQGIRVNSVAPG 185
|
Length = 258 |
| >gnl|CDD|235910 PRK07024, PRK07024, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 49/207 (23%), Positives = 87/207 (42%), Gaps = 32/207 (15%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL 129
+TG++SGIG+ +AR+ A GA + + R + +Q + + D+
Sbjct: 7 ITGASSGIGQALAREYARQGATLGLVARR----TDALQAFAARL---PKAARVSVYAADV 59
Query: 130 LSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIG----EPQKFSKDGYEEHMQVNHLAPAL 185
D++ + + G V+I NAGI S+G E + + E M N+ +
Sbjct: 60 RDADALAAAAADFIAAHGLPDVVIANAGI-SVGTLTEEREDL--AVFREVMDTNYFG-MV 115
Query: 186 LSILLFPSLIRGSPS-RIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
+ F + +R + ++ + S V+G R YS SK A IK
Sbjct: 116 ATFQPFIAPMRAARRGTLVGIAS---------------VAGVRGLPGAGAYSASKAAAIK 160
Query: 245 FSSILQKRLPAESGINVVCVSPGIVST 271
+ L+ L +G+ VV ++PG + T
Sbjct: 161 YLESLRVEL-RPAGVRVVTIAPGYIRT 186
|
Length = 257 |
| >gnl|CDD|181297 PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 62/251 (24%), Positives = 89/251 (35%), Gaps = 62/251 (24%)
Query: 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN---LKAANELIQKWQEEWSGKGLPL 120
D ++TG G+GR +A LA+ GA + + N L+ A E +G
Sbjct: 4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTE--VRGYAA 61
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG-YEEHMQVN 179
N+ E D V G L+ LINNAGI G K KDG M
Sbjct: 62 NV-TDEED------VEATFAQIAEDFGQLNGLINNAGILRDGLLVKA-KDGKVTSKM--- 110
Query: 180 HLAPALLSILLFPSLI--------------------RGSPSRIINVNSVMHYVGFVDTED 219
S+ F S+I GS IIN++S+ T
Sbjct: 111 -------SLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGNMGQTN- 162
Query: 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-P 278
YS SK + K L A GI V ++PG++ T + + P
Sbjct: 163 ---------------YSASKAGVAAMTVTWAKEL-ARYGIRVAAIAPGVIETEMTAAMKP 206
Query: 279 KIVQAAYHLIP 289
+ ++ +IP
Sbjct: 207 EALERLEKMIP 217
|
Length = 253 |
| >gnl|CDD|180771 PRK06947, PRK06947, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-07
Identities = 53/216 (24%), Positives = 79/216 (36%), Gaps = 34/216 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHV-VMAVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
++TG++ GIGR A A G V + R+ AA E G+ +
Sbjct: 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADA-VRAAGGRAC-----VV 57
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPA 184
D+ + V+ +A G L L+NNAGI + P N L
Sbjct: 58 AGDVANEADVIAMFDAVQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAY 117
Query: 185 LLSILLFPSLIR---GSPSRIINVNSVMHYVG----FVDTEDMNVVSGRRKYTSLMGYSG 237
L + L G I+NV+S+ +G +VD Y+G
Sbjct: 118 LCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEYVD------------------YAG 159
Query: 238 SKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273
SK A + L K L G+ V V PG++ T +
Sbjct: 160 SKGAVDTLTLGLAKELGPH-GVRVNAVRPGLIETEI 194
|
Length = 248 |
| >gnl|CDD|235739 PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 3e-07
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 26/156 (16%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
++TG SGIGR + + GA V + R+ + L Q++ + ++ +E D
Sbjct: 10 LITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGD---------HVLVVEGD 60
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIF----SIGE--PQKFSKDGYEEHMQVN--- 179
+ S R + G L + NAGI+ S+ + + ++E VN
Sbjct: 61 VTSYADNQRAVDQTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDT-AFDEIFNVNVKG 119
Query: 180 --HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213
A A L P+L S I +++ Y G
Sbjct: 120 YLLGAKAAL-----PALKASGGSMIFTLSNSSFYPG 150
|
Length = 263 |
| >gnl|CDD|187636 cd08931, SDR_c9, classical (c) SDR, subgroup 9 | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-07
Identities = 56/226 (24%), Positives = 73/226 (32%), Gaps = 48/226 (21%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL 129
+TG+ SGIGRE A A +G V + + L + A +
Sbjct: 5 ITGAASGIGRETALLFARNGWFVGLYDIDEDGL-------------AALAAELGAENVVA 51
Query: 130 LSLDSVVRFSEAWNGRL--------GPLHVLINNAGIFSIGEPQKFSKDGYEEH---MQV 178
+LD V AW L G L L NNAG+ G F H + +
Sbjct: 52 GALD--VTDRAAWAAALADFAAATGGRLDALFNNAGVGRGG---PFEDVPLAAHDRMVDI 106
Query: 179 NHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGS 238
N + P L +R+IN S G D L YS +
Sbjct: 107 NVKGVLNGAYAALPYLKATPGARVINTASSSAIYGQPD---------------LAVYSAT 151
Query: 239 KLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAA 284
K A + L A GI V V P V T + L K A
Sbjct: 152 KFAVRGLTEALDVEW-ARHGIRVADVWPWFVDTPI---LTKGETGA 193
|
This subgroup has the canonical active site tetrad and NAD-binding motif of the classical SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 227 |
| >gnl|CDD|187631 cd05373, SDR_c10, classical (c) SDR, subgroup 10 | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-07
Identities = 32/108 (29%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
V G+ G+G IAR+ A G V +A R L+ + G A+
Sbjct: 1 VAAVVGAGDGLGAAIARRFAAEGFSVALAARREAKLEALLVDIIRDAGGSAK-----AVP 55
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAG---IFSIGE--PQKFSK 169
D D V+ + +GPL VL+ NAG F I E P+ F K
Sbjct: 56 TDARDEDEVIALFDLIEEEIGPLEVLVYNAGANVWFPILETTPRVFEK 103
|
This subgroup resembles the classical SDRs, but has an incomplete match to the canonical glycine rich NAD-binding motif and lacks the typical active site tetrad (instead of the critical active site Tyr, it has Phe, but contains the nearby Lys). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 238 |
| >gnl|CDD|219957 pfam08659, KR, KR domain | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 4e-07
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 13/118 (11%)
Query: 69 IVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMEL 127
+VTG G+G E+AR LAE GA H+V+ R+ A + + E +G + +
Sbjct: 4 LVTGGLGGLGLELARWLAERGARHLVLLSRS-GAPDPEAEALLAELEARG--AEVTVVAC 60
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
D+ D+V PL +I+ AG+ +D +M A L
Sbjct: 61 DVSDRDAVRALLAEIRADGPPLRGVIHAAGVL---------RDALLANMTAEDFARVL 109
|
This enzymatic domain is part of bacterial polyketide synthases and catalyzes the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. Length = 181 |
| >gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-07
Identities = 38/143 (26%), Positives = 58/143 (40%), Gaps = 17/143 (11%)
Query: 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGL 118
P+ + +VTG+ GIG E+AR+L GA + + L E G
Sbjct: 3 PMTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAAL----AAELGGDDR 58
Query: 119 PLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQV 178
L + A DL ++ + + R G + V++ NAGI S G + D + + V
Sbjct: 59 VLTVVADVTDLAAMQAAAEEAVE---RFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDV 115
Query: 179 N-----HLAPALLSILLFPSLIR 196
N H A L P+LI
Sbjct: 116 NLLGVFHTVRATL-----PALIE 133
|
Length = 296 |
| >gnl|CDD|236357 PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (119), Expect = 4e-07
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQE-EWSGKGLPLNI 122
D +VTG+ GIGRE A A GA V++ R + +L + E E +G P I
Sbjct: 11 KDRIILVTGAGDGIGREAALTYARHGATVILLGRTEE---KLEAVYDEIEAAGGPQPAII 67
Query: 123 EAMELDLLSLDS--VVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVN 179
LDLL+ + ++ + G L +++NAG+ P ++ + +++ MQVN
Sbjct: 68 ---PLDLLTATPQNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVN 124
Query: 180 HLAPALLSILLFPSLIRGSPS 200
A +L+ L P L+ SP+
Sbjct: 125 VNATFMLTQALLP-LLLKSPA 144
|
Length = 247 |
| >gnl|CDD|169556 PRK08703, PRK08703, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 5e-07
Identities = 43/155 (27%), Positives = 73/155 (47%), Gaps = 21/155 (13%)
Query: 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPL 120
++D T +VTG++ G+G ++A+ A +GA V++ R+ K ++K + G P
Sbjct: 2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKK----LEKVYDAIVEAGHP- 56
Query: 121 NIEAMELDLLSLDS------VVRFSEAWNGRL-GPLHVLINNAGIFSIGEPQKFSKDGYE 173
A+ DL+S + +EA G+L G +H AG F P F
Sbjct: 57 EPFAIRFDLMSAEEKEFEQFAATIAEATQGKLDGIVHC----AGYFYALSPLDFQT--VA 110
Query: 174 EHM---QVNHLAPALLSILLFPSLIRGSPSRIINV 205
E + ++N +AP L+ LFP L + + +I V
Sbjct: 111 EWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFV 145
|
Length = 239 |
| >gnl|CDD|177895 PLN02253, PLN02253, xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-07
Identities = 63/236 (26%), Positives = 98/236 (41%), Gaps = 45/236 (19%)
Query: 51 ASHLQNPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQ 110
AS + LP + +VTG +GIG I R + GA V + ++L Q
Sbjct: 4 ASSSASSLPSQRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIV----DLQDDLGQNVC 59
Query: 111 EEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP----QK 166
+ G+ N+ D+ D V R + + G L +++NNAG+ G P +
Sbjct: 60 DSLGGEP---NVCFFHCDVTVEDDVSRAVDFTVDKFGTLDIMVNNAGL--TGPPCPDIRN 114
Query: 167 FSKDGYEEHMQVNHLAPALLSI-----LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221
+E+ VN + L + ++ P L +GS I+++ SV +G +
Sbjct: 115 VELSEFEKVFDVN-VKGVFLGMKHAARIMIP-LKKGS---IVSLCSVASAIGGL------ 163
Query: 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAE---SGINVVCVSPGIVSTNVA 274
G YT GSK A + L + + AE GI V CVSP V T +A
Sbjct: 164 ---GPHAYT------GSKHAVLG----LTRSVAAELGKHGIRVNCVSPYAVPTALA 206
|
Length = 280 |
| >gnl|CDD|181044 PRK07577, PRK07577, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-07
Identities = 46/212 (21%), Positives = 82/212 (38%), Gaps = 35/212 (16%)
Query: 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
+ T +VTG+T GIG ++ +LA G V+ R+ +++ G+ ++
Sbjct: 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARS----------AIDDFPGELFACDLA 51
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAP 183
+E +L + + P+ ++NN GI K ++ +N A
Sbjct: 52 DIEQTAATLAQIN--------EIHPVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAA 103
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
++ + RI+N+ S + G TS YS +K A +
Sbjct: 104 VQVTQAFLEGMKLREQGRIVNICS-------------RAIFGALDRTS---YSAAKSALV 147
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275
+ L AE GI V V+PG + T + R
Sbjct: 148 GCTRTWALEL-AEYGITVNAVAPGPIETELFR 178
|
Length = 234 |
| >gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 7e-07
Identities = 47/211 (22%), Positives = 87/211 (41%), Gaps = 40/211 (18%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG +SGIG I ++L +GA+VV A ++ + + N + +
Sbjct: 11 IIIVTGGSSGIGLAIVKELLANGANVVNA--DIHGGDGQHE-------------NYQFVP 55
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFS---IGEPQK------FSKDGYEEHMQ 177
D+ S + V + G + L+NNAGI + + + ++ +++
Sbjct: 56 TDVSSAEEVNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFN 115
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
+N L+S + +++ I+N++S G +E + Y+
Sbjct: 116 INQKGVFLMSQAVARQMVKQHDGVIVNMSS---EAGLEGSEGQSC------------YAA 160
Query: 238 SKLAQIKFSSILQKRLPAESGINVVCVSPGI 268
+K A F+ K L + I VV V+PGI
Sbjct: 161 TKAALNSFTRSWAKEL-GKHNIRVVGVAPGI 190
|
Length = 266 |
| >gnl|CDD|187663 cd09762, HSDL2_SDR_c, human hydroxysteroid dehydrogenase-like protein 2 (HSDL2), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 8e-07
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 11/145 (7%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL------IQKWQEEWSGKGLPL 120
T +TG++ GIG+ IA + A GA+VV+A + + +L + E GK LP
Sbjct: 5 TLFITGASRGIGKAIALKAARDGANVVIAAKTAEPHPKLPGTIYTAAEEIEAAGGKALPC 64
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNH 180
++ + D + +V + E + G + +L+NNA S+ Y+ M VN
Sbjct: 65 IVDIRDEDQVR-AAVEKAVEKFGG----IDILVNNASAISLTGTLDTPMKRYDLMMGVNT 119
Query: 181 LAPALLSILLFPSLIRGSPSRIINV 205
L S P L + I+N+
Sbjct: 120 RGTYLCSKACLPYLKKSKNPHILNL 144
|
This subgroup includes human HSDL2 and related protens. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. HSDL2 may play a part in fatty acid metabolism, as it is found in peroxisomes. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 243 |
| >gnl|CDD|235703 PRK06125, PRK06125, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG++ GIG A A G H+ + R+ A ++ + +++
Sbjct: 9 RVLITGASKGIGAAAAEAFAAEGCHLHLVARDADA----LEALAADLRAAH-GVDVAVHA 63
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAG 157
LDL S ++ + + G + +L+NNAG
Sbjct: 64 LDLSSPEAREQLAA----EAGDIDILVNNAG 90
|
Length = 259 |
| >gnl|CDD|180300 PRK05875, PRK05875, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 34/96 (35%), Positives = 46/96 (47%), Gaps = 10/96 (10%)
Query: 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN---LKAANELIQKWQEEWSGKGLPLN 121
D T +VTG SGIG+ +A L +GA V++ RN L AA E I E G G
Sbjct: 7 DRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEI----EALKGAG---A 59
Query: 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG 157
+ D+ D V R +A G LH +++ AG
Sbjct: 60 VRYEPADVTDEDQVARAVDAATAWHGRLHGVVHCAG 95
|
Length = 276 |
| >gnl|CDD|187664 cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-06
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 8/91 (8%)
Query: 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMEL 127
+VTG++ GIGR IA QL E+GA V + R + + E GK +P+ +
Sbjct: 6 ALVTGASRGIGRGIALQLGEAGATVYITGRTILPQLPGTAEEIEARGGKCIPVRCDH--- 62
Query: 128 DLLSLDSVVR--FSEAWNGRLGPLHVLINNA 156
S D V F + G L +L+NNA
Sbjct: 63 ---SDDDEVEALFERVAREQQGRLDILVNNA 90
|
This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 265 |
| >gnl|CDD|183772 PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 1e-06
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 9/92 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEE-WSGKGLPLNIEAM 125
+VTG+ GIGR +A + A GA VV+ R +EL+ + E + G L + A
Sbjct: 10 VVVVTGAAQGIGRGVALRAAAEGARVVLVDR-----SELVHEVAAELRAAGGEALALTA- 63
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG 157
DL + A G + VLINN G
Sbjct: 64 --DLETYAGAQAAMAAAVEAFGRIDVLINNVG 93
|
Length = 260 |
| >gnl|CDD|235853 PRK06701, PRK06701, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 56/216 (25%), Positives = 86/216 (39%), Gaps = 40/216 (18%)
Query: 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124
++TG SGIGR +A A+ GA + + + ++ E+ K L + +
Sbjct: 46 GKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDV 105
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHM----QVN- 179
+ D+V LG L +L+NNA PQ+ +D E + + N
Sbjct: 106 SDEAFCK-DAVEETVRE----LGRLDILVNNAAF---QYPQQSLEDITAEQLDKTFKTNI 157
Query: 180 ----HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGY 235
H+ A L P L +GS IIN S+ Y G L+ Y
Sbjct: 158 YSYFHMTKAAL-----PHLKQGSA--IINTGSITGYEGNET---------------LIDY 195
Query: 236 SGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
S +K A F+ L + L + GI V V+PG + T
Sbjct: 196 SATKGAIHAFTRSLAQSL-VQKGIRVNAVAPGPIWT 230
|
Length = 290 |
| >gnl|CDD|236116 PRK07856, PRK07856, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 59/215 (27%), Positives = 83/215 (38%), Gaps = 54/215 (25%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG T GIG IAR +GA VV+ R + G P A D
Sbjct: 10 LVTGGTRGIGAGIARAFLAAGATVVVCGRR------------APETVDGRPAEFHA--AD 55
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQ--------KFSKDGYEEHMQVNH 180
+ D V +A R G L VL+NNAG G P +F E+ +++N
Sbjct: 56 VRDPDQVAALVDAIVERHGRLDVLVNNAG----GSPYALAAEASPRFH----EKIVELNL 107
Query: 181 LAPALLSILLFPSLIRGSPSR--IINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGS 238
LAP L++ +++ P I+N+ S VSGRR Y +
Sbjct: 108 LAPLLVAQAANA-VMQQQPGGGSIVNIGS---------------VSGRRPSPGTAAYGAA 151
Query: 239 KLAQIKFSSILQKRLPAESG--INVVCVSPGIVST 271
K + L + L E + V V G+V T
Sbjct: 152 KAGLLN----LTRSLAVEWAPKVRVNAVVVGLVRT 182
|
Length = 252 |
| >gnl|CDD|135631 PRK05867, PRK05867, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-06
Identities = 49/219 (22%), Positives = 88/219 (40%), Gaps = 26/219 (11%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
++TG+++GIG+ +A E+GA V +A R+L A ++K +E G + + D
Sbjct: 13 LITGASTGIGKRVALAYVEAGAQVAIAARHLDA----LEKLADEIGTSG--GKVVPVCCD 66
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ V + LG + + + NAGI ++ + ++ N L +
Sbjct: 67 VSQHQQVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQ 126
Query: 189 LLFPSLIR-GSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSS 247
++++ G IIN S+ ++ +NV + Y SK A I +
Sbjct: 127 AAAKAMVKQGQGGVIINTASMSGHI-------INVPQ------QVSHYCASKAAVIHLTK 173
Query: 248 ILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYH 286
+ L A I V VSPG + T + Y
Sbjct: 174 AMAVEL-APHKIRVNSVSPGYILTELVEPY-----TEYQ 206
|
Length = 253 |
| >gnl|CDD|171822 PRK12938, PRK12938, acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 2e-06
Identities = 53/221 (23%), Positives = 94/221 (42%), Gaps = 22/221 (9%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL 129
VTG GIG I ++L + G VV KW E+ K L + A E ++
Sbjct: 8 VTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRV---KWLED--QKALGFDFIASEGNV 62
Query: 130 LSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSIL 189
DS + +G + VL+NNAGI +K +++ + + N + ++
Sbjct: 63 GDWDSTKAAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQ 122
Query: 190 LFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSIL 249
+ ++ RIIN++S V+G++ YS +K F+ L
Sbjct: 123 VIDGMVERGWGRIINISS---------------VNGQKGQFGQTNYSTAKAGIHGFTMSL 167
Query: 250 QKRLPAESGINVVCVSPGIVSTNVARDL-PKIVQAAYHLIP 289
+ + A G+ V VSPG + T++ + + P +++ IP
Sbjct: 168 AQEV-ATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATIP 207
|
Length = 246 |
| >gnl|CDD|180371 PRK06057, PRK06057, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 60/227 (26%), Positives = 87/227 (38%), Gaps = 52/227 (22%)
Query: 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMA----VRNLKAANELIQKWQEEWSGKGLPL 120
++TG SGIG AR+LA GA VV+ AA+E+
Sbjct: 7 GRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV--------------- 51
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFS-----KDGYEEH 175
+ D+ D+V + G + + NNAGI P+ S D ++
Sbjct: 52 GGLFVPTDVTDEDAVNALFDTAAETYGSVDIAFNNAGI---SPPEDDSILNTGLDAWQRV 108
Query: 176 MQVNHLAPALLSILL-----FPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYT 230
VN L S+ L P ++R IIN S FV V G T
Sbjct: 109 QDVN-----LTSVYLCCKAALPHMVRQGKGSIINTAS------FV------AVMG--SAT 149
Query: 231 SLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
S + Y+ SK + S L + A GI V + PG V+T + ++L
Sbjct: 150 SQISYTASKGGVLAMSRELGVQF-ARQGIRVNALCPGPVNTPLLQEL 195
|
Length = 255 |
| >gnl|CDD|180796 PRK07023, PRK07023, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 50/218 (22%), Positives = 81/218 (37%), Gaps = 41/218 (18%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRN----LKAANELIQKWQEEWSGKGLPLNIEA 124
IVTG + G+G +A QL + G V+ R+ L AA G L
Sbjct: 5 IVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPSLAAA-------------AGERL--AE 49
Query: 125 MELDLLSLDSVVRFSEAWNGRLGP----LHVLINNAGIFS-IGEPQKFSKDGYEEHMQVN 179
+ELDL + + +LINNAG IG + +N
Sbjct: 50 VELDLSDAAAAAAWLAGDLLAAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLN 109
Query: 180 HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
AP +L+ L + + RI++++S G + R Y Y +K
Sbjct: 110 VAAPLMLTAALAQAASDAAERRILHISS-----G----------AARNAYAGWSVYCATK 154
Query: 240 LAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
A + + L A + +V ++PG+V T + +
Sbjct: 155 AALDHHARAVA--LDANRALRIVSLAPGVVDTGMQATI 190
|
Length = 243 |
| >gnl|CDD|235813 PRK06482, PRK06482, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 48/213 (22%), Positives = 81/213 (38%), Gaps = 29/213 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +TG++SG GR + +L G V VR A ++L ++ + + ++
Sbjct: 4 TWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGD---------RLWVLQ 54
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LD+ +V + LG + V+++NAG G ++ S + N + +
Sbjct: 55 LDVTDSAAVRAVVDRAFAALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQV 114
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK-- 244
P L R RI+ V+S G+ Y Y +K I+
Sbjct: 115 IRAALPHLRRQGGGRIVQVSS---------------EGGQIAYPGFSLYHATKWG-IEGF 158
Query: 245 FSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
++ Q+ P GI V PG TN L
Sbjct: 159 VEAVAQEVAPF--GIEFTIVEPGPARTNFGAGL 189
|
Length = 276 |
| >gnl|CDD|233441 TIGR01500, sepiapter_red, sepiapterin reductase | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-06
Identities = 47/157 (29%), Positives = 77/157 (49%), Gaps = 23/157 (14%)
Query: 68 CIVTGSTSGIGREIARQLAES----GAHVVMAVRNLKAANELIQKWQEEWSGKGL---PL 120
C+VTG++ G GR IA++LA+ G+ +V++ RN +A +L + E SG + L
Sbjct: 3 CLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSL 62
Query: 121 NIEAMELDLLSLDSVVRFSEAWNG--RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQV 178
++ A E L L +R G RL +LINNAG ++G+ K D +
Sbjct: 63 DLGA-EAGLEQLLKALRELPRPKGLQRL----LLINNAG--TLGDVSKGFVDLSDSTQVQ 115
Query: 179 NHLAPALLSILLFPSLI-------RGSPSRIINVNSV 208
N+ A L S+L S + G ++N++S+
Sbjct: 116 NYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSL 152
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. Length = 256 |
| >gnl|CDD|180458 PRK06194, PRK06194, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 6e-06
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG+ SG G AR A G +V+A A + + E +G + +
Sbjct: 8 VAVITGAASGFGLAFARIGAALGMKLVLADVQQDA----LDRAVAELRAQGAE--VLGVR 61
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIG 162
D+ V ++A R G +H+L NNAG+ + G
Sbjct: 62 TDVSDAAQVEALADAALERFGAVHLLFNNAGVGAGG 97
|
Length = 287 |
| >gnl|CDD|187606 cd05348, BphB-like_SDR_c, cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 38/155 (24%), Positives = 62/155 (40%), Gaps = 24/155 (15%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
++TG SG+GR + + GA V + R+ + EL + + + +E D
Sbjct: 8 LITGGGSGLGRALVERFVAEGAKVAVLDRSAEKVAELRADFGD---------AVVGVEGD 58
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFS-----IGEPQKFSKDGYEEHMQVN---- 179
+ SL R R G L I NAGI+ + P++ + ++E +N
Sbjct: 59 VRSLADNERAVARCVERFGKLDCFIGNAGIWDYSTSLVDIPEEKLDEAFDELFHINVKGY 118
Query: 180 -HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213
A A L P+L S I V++ Y G
Sbjct: 119 ILGAKAAL-----PALYATEGSVIFTVSNAGFYPG 148
|
cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB) is a classical SDR, it is of particular importance for its role in the degradation of biphenyl/polychlorinated biphenyls(PCBs); PCBs are a significant source of environmental contamination. This subgroup also includes Pseudomonas putida F1 cis-biphenyl-1,2-dihydrodiol-1,2-dehydrogenase (aka cis-benzene glycol dehydrogenase, encoded by the bnzE gene), which participates in benzene metabolism. In addition it includes Pseudomonas sp. C18 putative 1,2-dihydroxy-1,2-dihydronaphthalene dehydrogenase (aka dibenzothiophene dihydrodiol dehydrogenase, encoded by the doxE gene) which participates in an upper naphthalene catabolic pathway. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|181131 PRK07814, PRK07814, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-05
Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 15/152 (9%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
++D +VTG+ G+G IA AE+GA V++A R +E+ E+ G ++
Sbjct: 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEV----AEQIRAAGRRAHV 63
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGE-PQKF---SKDGYEEHMQV 178
A DL ++ + G L +++NN G G P S +
Sbjct: 64 VAA--DLAHPEATAGLAGQAVEAFGRLDIVVNNVG----GTMPNPLLSTSTKDLADAFTF 117
Query: 179 NHLAPALLSILLFPSLIRGSPS-RIINVNSVM 209
N L++ P ++ S +IN++S M
Sbjct: 118 NVATAHALTVAAVPLMLEHSGGGSVINISSTM 149
|
Length = 263 |
| >gnl|CDD|181668 PRK09135, PRK09135, pteridine reductase; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 37/139 (26%), Positives = 55/139 (39%), Gaps = 11/139 (7%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRN-LKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+TG IG IAR L +G V + A+ L + G A++ D
Sbjct: 11 ITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAA-----ALQAD 65
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
LL D++ A G L L+NNA F ++ +++ N AP LS
Sbjct: 66 LLDPDALPELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQ 125
Query: 189 LLFPSL--IRGSPSRIINV 205
P L RG+ I+N+
Sbjct: 126 AAAPQLRKQRGA---IVNI 141
|
Length = 249 |
| >gnl|CDD|183714 PRK12742, PRK12742, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 50/204 (24%), Positives = 78/204 (38%), Gaps = 31/204 (15%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+V G + GIG I R+ GA+V K A E + QE + A++ D
Sbjct: 10 LVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLA--QETGA--------TAVQTD 59
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
D+V+ + G L +L+ NAGI G+ + D + ++N AP S+
Sbjct: 60 SADRDAVIDVVR----KSGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASV 115
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
+ G RII + SV R + Y+ SK A +
Sbjct: 116 EAARQMPEG--GRIIIIGSVN--------------GDRMPVAGMAAYAASKSALQGMARG 159
Query: 249 LQKRLPAESGINVVCVSPGIVSTN 272
L + GI + V PG + T+
Sbjct: 160 LARDF-GPRGITINVVQPGPIDTD 182
|
Length = 237 |
| >gnl|CDD|180343 PRK05993, PRK05993, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 49/207 (23%), Positives = 75/207 (36%), Gaps = 29/207 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+ ++TG +SGIG AR L G V R E + + E +EA +
Sbjct: 6 SILITGCSSGIGAYCARALQSDGWRVFATCRKE----EDVAALEAE--------GLEAFQ 53
Query: 127 LDLLSLDSVVRFSEAWNGRL-GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
LD +S+ G L L NN G + + + N
Sbjct: 54 LDYAEPESIAALVAQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHD 113
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
L+ + P + + RI+ +S++ G V KY Y+ SK A
Sbjct: 114 LTRRVIPVMRKQGQGRIVQCSSIL---GLVPM----------KYRG--AYNASKFAIEGL 158
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTN 272
S L+ L SGI+V + PG + T
Sbjct: 159 SLTLRMEL-QGSGIHVSLIEPGPIETR 184
|
Length = 277 |
| >gnl|CDD|187582 cd05274, KR_FAS_SDR_x, ketoreductase (KR) and fatty acid synthase (FAS), complex (x) SDRs | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 6/99 (6%)
Query: 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLP 119
P D T ++TG G+G +AR LA GA H+V+ R G
Sbjct: 146 PGGLDGTYLITGGLGGLGLLVARWLAARGARHLVLLSRR--GPAPRAAARAALLRAGGAR 203
Query: 120 LNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI 158
+ + D+ ++ GPL +I+ AG+
Sbjct: 204 --VSVVRCDVTDPAALAALLAEL-AAGGPLAGVIHAAGV 239
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. In some instances, such as porcine FAS, an enoyl reductase (ER) module is inserted between the sub-domains. Fatty acid synthesis occurs via the stepwise elongation of a chain (which is attached to acyl carrier protein, ACP) with 2-carbon units. Eukaryotic systems consist of large, multifunctional synthases (type I) while bacterial, type II systems, use single function proteins. Fungal fatty acid synthase uses a dodecamer of 6 alpha and 6 beta subunits. In mammalian type FAS cycles, ketoacyl synthase forms acetoacetyl-ACP which is reduced by the NADP-dependent beta-KR, forming beta-hydroxyacyl-ACP, which is in turn dehydrated by dehydratase to a beta-enoyl intermediate, which is reduced by NADP-dependent beta-ER. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 375 |
| >gnl|CDD|181324 PRK08251, PRK08251, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-05
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
++TG++SG+G +AR+ A G + + R EL + + G + + LD
Sbjct: 6 LITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPG----IKVAVAALD 61
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGI 158
+ D V + LG L +I NAGI
Sbjct: 62 VNDHDQVFEVFAEFRDELGGLDRVIVNAGI 91
|
Length = 248 |
| >gnl|CDD|130890 TIGR01831, fabG_rel, 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-05
Identities = 50/223 (22%), Positives = 87/223 (39%), Gaps = 24/223 (10%)
Query: 69 IVTGSTSGIGREIARQLAESGAHV-VMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMEL 127
+VTG++ GIGR IA +LA G + V A ++ Q N ++
Sbjct: 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQ------AQGGNARLLQF 55
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA-PALL 186
D+ + EA G + ++ NAGI S++ ++ + N ++
Sbjct: 56 DVADRVACRTLLEADIAEHGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVI 115
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
P + RII + SV + V G R + YS +K I +
Sbjct: 116 HPCTMPMIRARQGGRIITLASV------------SGVMGNR---GQVNYSAAKAGLIGAT 160
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIP 289
L L A+ I V C++PG++ T + ++ + A +P
Sbjct: 161 KALAVEL-AKRKITVNCIAPGLIDTEMLAEVEHDLDEALKTVP 202
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 239 |
| >gnl|CDD|180413 PRK06128, PRK06128, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 59/214 (27%), Positives = 94/214 (43%), Gaps = 43/214 (20%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAV--RNLKAANELIQKWQEEWSGK---GLPLNI- 122
++TG+ SGIGR A A GA + + + A E++Q Q E G+ LP ++
Sbjct: 59 LITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE--GRKAVALPGDLK 116
Query: 123 -EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG----IFSIGEPQKFSKDGYEEHMQ 177
EA L ++ V+ LG L +L+N AG + I + + + ++ +
Sbjct: 117 DEAFCRQL--VERAVK-------ELGGLDILVNIAGKQTAVKDIAD---ITTEQFDATFK 164
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
N A L P L G + IIN S+ Y + +L+ Y+
Sbjct: 165 TNVYAMFWLCKAAIPHLPPG--ASIINTGSIQSY---------------QPSPTLLDYAS 207
Query: 238 SKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
+K A + F+ L K++ AE GI V V+PG V T
Sbjct: 208 TKAAIVAFTKALAKQV-AEKGIRVNAVAPGPVWT 240
|
Length = 300 |
| >gnl|CDD|187656 cd08953, KR_2_SDR_x, ketoreductase (KR), subgroup 2, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 9/127 (7%)
Query: 39 YVIYEMLFQRILASHLQNPLPLPPVNDLTCI------VTGSTSGIGREIARQLAE-SGAH 91
V Y R + + PLP VTG GIGR +AR LA GA
Sbjct: 174 EVRYRDG-LRYVQTLEPLPLPAGAAASAPLKPGGVYLVTGGAGGIGRALARALARRYGAR 232
Query: 92 VVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHV 151
+V+ R+ E K Q + + L + + D+ +V R E R G +
Sbjct: 233 LVLLGRS-PLPPEEEWKAQTLAALEALGARVLYISADVTDAAAVRRLLEKVRERYGAIDG 291
Query: 152 LINNAGI 158
+I+ AG+
Sbjct: 292 VIHAAGV 298
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes both KR domains of the Bacillus subtilis Pks J,-L, and PksM, and all three KR domains of PksN, components of the megacomplex bacillaene synthase, which synthesizes the antibiotic bacillaene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 436 |
| >gnl|CDD|187589 cd05328, 3alpha_HSD_SDR_c, alpha hydroxysteroid dehydrogenase (3alpha_HSD), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-05
Identities = 47/224 (20%), Positives = 80/224 (35%), Gaps = 44/224 (19%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVV-MAVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
T ++TG+ SGIG A L ++G V+ + +R +L P A
Sbjct: 1 TIVITGAASGIGAATAELLEDAGHTVIGIDLREADVIADL-----------STPEGRAAA 49
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
D+L+ S G L L+N AG +G ++VN+
Sbjct: 50 IADVLARCS------------GVLDGLVNCAG---VGGTT-----VAGLVLKVNYFGLRA 89
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN------------VVSGRRKYTSLM 233
L L P L +G + V+S+ D ++ ++ +
Sbjct: 90 LMEALLPRLRKGHGPAAVVVSSIAGAGWAQDKLELAKALAAGTEARAVALAEHAGQPGYL 149
Query: 234 GYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
Y+GSK A ++ +G+ V V+PG V T + +
Sbjct: 150 AYAGSKEALTVWTRRRAATWLYGAGVRVNTVAPGPVETPILQAF 193
|
Bacterial 3-alpha_HSD, which catalyzes the NAD-dependent oxidoreduction of hydroxysteroids, is a dimeric member of the classical SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 250 |
| >gnl|CDD|181508 PRK08628, PRK08628, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124
D IVTG SGIG I+ +LAE GA V+ R+ +E ++ + L E
Sbjct: 7 DKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRS-APDDEFAEELRA------LQPRAEF 59
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI 158
+++DL E + G + L+NNAG+
Sbjct: 60 VQVDLTDDAQCRDAVEQTVAKFGRIDGLVNNAGV 93
|
Length = 258 |
| >gnl|CDD|180440 PRK06172, PRK06172, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 5e-05
Identities = 54/214 (25%), Positives = 79/214 (36%), Gaps = 35/214 (16%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA--ME 126
+VTG +GIGR A A GA VV+A R+ E + +E EA +
Sbjct: 11 LVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGG--------EALFVA 62
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKF---SKDGYEEHMQVNHLAP 183
D+ V E G L NNAGI E + S+ ++ M VN
Sbjct: 63 CDVTRDAEVKALVEQTIAAYGRLDYAFNNAGI--EIEQGRLAEGSEAEFDAIMGVNVKGV 120
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
L P ++ I+N SV + Y+ SK A I
Sbjct: 121 WLCMKYQIPLMLAQGGGAIVNTASVAGLGAA---------------PKMSIYAASKHAVI 165
Query: 244 KF--SSILQKRLPAESGINVVCVSPGIVSTNVAR 275
S+ ++ A+ GI V V P ++ T++ R
Sbjct: 166 GLTKSAAIEY---AKKGIRVNAVCPAVIDTDMFR 196
|
Length = 253 |
| >gnl|CDD|182531 PRK10538, PRK10538, malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 6e-05
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+T+G G I R+ + G V+ R E +Q+ ++E L N+ +LD
Sbjct: 4 LVTGATAGFGECITRRFIQQGHKVIATGRR----QERLQELKDE-----LGDNLYIAQLD 54
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPALLS 187
+ + ++ + + VL+NNAG+ EP K S + +E + N+ ++
Sbjct: 55 VRNRAAIEEMLASLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMT 114
Query: 188 ILLFPSLIRGSPSRIINVNSV 208
+ P ++ + IIN+ S
Sbjct: 115 RAVLPGMVERNHGHIINIGST 135
|
Length = 248 |
| >gnl|CDD|181517 PRK08642, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 9e-05
Identities = 55/216 (25%), Positives = 86/216 (39%), Gaps = 33/216 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK-AANELIQKWQEEWSGKGLPLNIEAM 125
T +VTG + G+G IAR A GA VV+ + AA L E + + L
Sbjct: 7 TVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALAD----ELGDRAIAL----- 57
Query: 126 ELDLLSLDSVVRFSEAWNGRLG-PLHVLINNAGI-FSI-GEPQKFSKD-GYEEHM-QVNH 180
+ D+ + V G P+ ++NNA FS G+ +K + D +E+ Q+
Sbjct: 58 QADVTDREQVQAMFATATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEG 117
Query: 181 LAPALLSIL--LFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGS 238
L+ + P + RIIN+ + + N V YT+ +
Sbjct: 118 SVKGALNTIQAALPGMREQGFGRIINIGTNLF---------QNPVVPYHDYTT------A 162
Query: 239 KLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274
K A + + L L GI V VS G++ T A
Sbjct: 163 KAALLGLTRNLAAEL-GPYGITVNMVSGGLLRTTDA 197
|
Length = 253 |
| >gnl|CDD|187655 cd08952, KR_1_SDR_x, ketoreductase (KR), subgroup 1, complex (x) SDRs | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 1e-04
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 67 TCIVTGSTSGIGREIARQLAESGA-HVVMAVR 97
T +VTG T +G +AR LA GA H+V+ R
Sbjct: 232 TVLVTGGTGALGAHVARWLARRGAEHLVLTSR 263
|
Ketoreductase, a module of the multidomain polyketide synthase (PKS), has 2 subdomains, each corresponding to a SDR family monomer. The C-terminal subdomain catalyzes the NADPH-dependent reduction of the beta-carbonyl of a polyketide to a hydroxyl group, a step in the biosynthesis of polyketides, such as erythromycin. The N-terminal subdomain, an interdomain linker, is a truncated Rossmann fold which acts to stabilizes the catalytic subdomain. Unlike typical SDRs, the isolated domain does not oligomerize but is composed of 2 subdomains, each resembling an SDR monomer. The active site resembles that of typical SDRs, except that the usual positions of the catalytic Asn and Tyr are swapped, so that the canonical YXXXK motif changes to YXXXN. Modular PKSs are multifunctional structures in which the makeup recapitulates that found in (and may have evolved from) FAS. Polyketide synthesis also proceeds via the addition of 2-carbon units as in fatty acid synthesis. The complex SDR NADP-binding motif, GGXGXXG, is often present, but is not strictly conserved in each instance of the module. This subfamily includes KR domains found in many multidomain PKSs, including six of seven Sorangium cellulosum PKSs (encoded by spiDEFGHIJ) which participate in the synthesis of the polyketide scaffold of the cytotoxic spiroketal polyketide spirangien. These seven PKSs have either a single PKS module (SpiF), two PKR modules (SpiD,-E,-I,-J), or three PKS modules (SpiG,-H). This subfamily includes the single KR domain of SpiF, the first KR domains of SpiE,-G,H,-I,and #J, the third KR domain of SpiG, and the second KR domain of SpiH. The second KR domains of SpiE,-G, I, and #J, and the KR domains of SpiD, belong to a different KR_FAS_SDR subfamily. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 480 |
| >gnl|CDD|234422 TIGR03971, SDR_subfam_1, oxidoreductase, SDR family | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 49/210 (23%), Positives = 80/210 (38%), Gaps = 24/210 (11%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVM--AVRNLKAANELIQKWQEEWSG-----KGLPLNI 122
+TG+ G GR A +LA GA ++ L +E+ + L +
Sbjct: 8 ITGAARGQGRAHAVRLAAEGADIIAIDLCAPLSDYPTYPLATREDLDETARLVEALGRKV 67
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA 182
A + D+ L V E + G L V++ NAG+ S G + S++ ++ + +N
Sbjct: 68 LARKADVRDLAEVRAVVEDGVEQFGRLDVVVANAGVLSYGRSWELSEEQWDTVLDINLTG 127
Query: 183 PALLSILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
+ P +I RG+ II +SV L Y+ +K
Sbjct: 128 VWRTCKAVVPHMIERGNGGSIIITSSVAGLKAL---------------PGLAHYAAAKHG 172
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVST 271
+ + L L AE GI V + P V T
Sbjct: 173 LVGLTKTLANEL-AEYGIRVNSIHPYSVDT 201
|
Members of this protein subfamily are putative oxidoreductases belonging to the larger SDR family. Members of the present subfamily may occur several to a genome and are largely restricted to genomes that contain members of families TIGR03962, TIGR03967, and TIGR03969. Many members have been annotated by homology as carveol dehydrogenases. Length = 265 |
| >gnl|CDD|181417 PRK08416, PRK08416, 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 1e-04
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAV-RNLKAANELIQKWQEEWS--GKGLPLNI 122
T +++G T GIG+ I + A+SG ++ N++ AN++ + ++++ K PLNI
Sbjct: 10 TLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNI 68
|
Length = 260 |
| >gnl|CDD|135637 PRK05876, PRK05876, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 2e-04
Identities = 48/224 (21%), Positives = 87/224 (38%), Gaps = 31/224 (13%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
++TG SGIG + A GA VV+ + + + +G ++ + D
Sbjct: 10 VITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAV----NHLRAEG--FDVHGVMCD 63
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN-----HLAP 183
+ + V ++ LG + V+ +NAGI G + + D + + V+ H
Sbjct: 64 VRHREEVTHLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVE 123
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
A L L L +G+ ++ S + G V L Y +K +
Sbjct: 124 AFLPRL----LEQGTGGHVVFTAS---FAGLVPN------------AGLGAYGVAKYGVV 164
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHL 287
+ L + + A+ GI V + P +V TN+ + +I AA
Sbjct: 165 GLAETLAREVTAD-GIGVSVLCPMVVETNLVANSERIRGAACAQ 207
|
Length = 275 |
| >gnl|CDD|180399 PRK06101, PRK06101, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 2e-04
Identities = 54/213 (25%), Positives = 79/213 (37%), Gaps = 47/213 (22%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG+TSGIG+++A A+ G V+ RN +EL + NI +
Sbjct: 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSA----------NIFTLA 52
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVL--INNAGIFSIGEPQKFSKDGYEEH------MQV 178
D+ L L I IF+ G+ + + DG + V
Sbjct: 53 FDVTDHPGTKA----------ALSQLPFIPELWIFNAGDCE-YMDDGKVDATLMARVFNV 101
Query: 179 NHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGS 238
N L A + P L G R++ V S+ + E Y S
Sbjct: 102 NVLGVANCIEGIQPHLSCG--HRVVIVGSIASELALPRAE---------------AYGAS 144
Query: 239 KLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
K A F+ LQ L + GI VV V PG V+T
Sbjct: 145 KAAVAYFARTLQLDLRPK-GIEVVTVFPGFVAT 176
|
Length = 240 |
| >gnl|CDD|181585 PRK08936, PRK08936, glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLP 119
+ ++TG ++G+GR +A + + A VV+ R + + AN++ ++ ++ +G G
Sbjct: 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKK--AG-GEA 59
Query: 120 LNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI 158
+ ++ D+ VV + G L V+INNAGI
Sbjct: 60 IAVKG---DVTVESDVVNLIQTAVKEFGTLDVMINNAGI 95
|
Length = 261 |
| >gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 3e-04
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQK 108
VTG+T +G + L A VV VRN + A
Sbjct: 3 VTGATGKLGTAVVELLLAKVASVVALVRNPEKAKAFAAD 41
|
TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272 |
| >gnl|CDD|181188 PRK07985, PRK07985, oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 3e-04
Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 27/212 (12%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQE--EWSGKGLPL 120
+ D +VTG SGIGR A A GA V A+ L E Q ++ E G+ L
Sbjct: 47 LKDRKALVTGGDSGIGRAAAIAYAREGADV--AISYLPVEEEDAQDVKKIIEECGRKAVL 104
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI-FSIGEPQKFSKDGYEEHMQVN 179
+ + + V +A LG L ++ AG +I + + + +++ +N
Sbjct: 105 LPGDLSDEKFARSLVHEAHKA----LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAIN 160
Query: 180 HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
A L+ P L +G + II +S+ Y + L+ Y+ +K
Sbjct: 161 VFALFWLTQEAIPLLPKG--ASIITTSSIQAY---------------QPSPHLLDYAATK 203
Query: 240 LAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
A + +S L K++ AE GI V V+PG + T
Sbjct: 204 AAILNYSRGLAKQV-AEKGIRVNIVAPGPIWT 234
|
Length = 294 |
| >gnl|CDD|236056 PRK07576, PRK07576, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 3e-04
Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+V G TSGI IA+ A +GA+V +A R+ + + + + Q+ +GL +
Sbjct: 11 NVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA-GPEGL-----GVS 64
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNA 156
D+ +V GP+ VL++ A
Sbjct: 65 ADVRDYAAVEAAFAQIADEFGPIDVLVSGA 94
|
Length = 264 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 3e-04
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQ 110
VTG+T +G + R+L G V AVRN +AA L +
Sbjct: 5 VTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALAGGVE 45
|
Length = 275 |
| >gnl|CDD|180617 PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 53/220 (24%), Positives = 78/220 (35%), Gaps = 66/220 (30%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T ++TG+ SGIG AR GA V V K + N ++
Sbjct: 7 TVLITGAASGIGLAQARAFLAQGAQVY-GVD--KQDKPDLSG------------NFHFLQ 51
Query: 127 LDLLS-LDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGY-----------EE 174
LDL L+ + + + + +L N AGI D Y +
Sbjct: 52 LDLSDDLEPLFDW-------VPSVDILCNTAGIL----------DDYKPLLDTSLEEWQH 94
Query: 175 HMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG 234
N + LL+ P ++ IIN+ S+ FV G YT+
Sbjct: 95 IFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSI---ASFVAG------GGGAAYTA--- 142
Query: 235 YSGSKLAQIKFSSILQKRLP---AESGINVVCVSPGIVST 271
SK A F+ K+L A+ GI V ++PG V T
Sbjct: 143 ---SKHALAGFT----KQLALDYAKDGIQVFGIAPGAVKT 175
|
Length = 235 |
| >gnl|CDD|180838 PRK07102, PRK07102, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 57/219 (26%), Positives = 90/219 (41%), Gaps = 44/219 (20%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRN---LKA-ANELIQKWQEEWSGKGLPLNIEAM 125
+ G+TS I R AR+ A +GA + +A R+ L+ A++L + +
Sbjct: 6 IIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVA---------VSTH 56
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGE-PQKFSKDGYEEH----MQVNH 180
ELD+L S F ++ P VLI ++G + + + + N
Sbjct: 57 ELDILDTASHAAFLDSLPAL--PDIVLI------AVGTLGDQAACEADPALALREFRTNF 108
Query: 181 LAPALLSILLFPSL-IRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
P L LL RGS + I+ ++S V+G R S Y +K
Sbjct: 109 EGPIALLTLLANRFEARGSGT-IVGISS---------------VAGDRGRASNYVYGSAK 152
Query: 240 LAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
A F S L+ RL +SG++V+ V PG V T + L
Sbjct: 153 AALTAFLSGLRNRL-FKSGVHVLTVKPGFVRTPMTAGLK 190
|
Length = 243 |
| >gnl|CDD|187611 cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 22/156 (14%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAA-------NELIQKWQEE--- 112
+ +VTG+ G+GR A AE GA VV V +L + K +E
Sbjct: 3 FDGRVVLVTGAGGGLGRAYALAFAERGAKVV--VNDLGGDRKGSGKSSSAADKVVDEIKA 60
Query: 113 WSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGY 172
GK + + + + ++ F G + +L+NNAGI K S++ +
Sbjct: 61 AGGKAVANYDSVEDGEKIVKTAIDAF--------GRVDILVNNAGILRDRSFAKMSEEDW 112
Query: 173 EEHMQVNHLAPA-LLSILLFPSLIRGSPSRIINVNS 207
+ M+V HL + ++ +P + + RIIN +S
Sbjct: 113 DLVMRV-HLKGSFKVTRAAWPYMRKQKFGRIINTSS 147
|
Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs. Length = 250 |
| >gnl|CDD|187583 cd05322, SDH_SDR_c_like, Sorbitol 6-phosphate dehydrogenase (SDH), classical (c) SDRs | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 8e-04
Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 22/200 (11%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+V G +G + LAE+G V +A N + A ++ + E+ K D
Sbjct: 6 VVIGGGQTLGEFLCHGLAEAGYDVAVADINSENAEKVADEINAEYGEKAY-----GFGAD 60
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ SV+ S+ + + +L+ +AGI + F ++ +QVN + L +
Sbjct: 61 ATNEQSVIALSKGVDEIFKRVDLLVYSAGIAKSAKITDFELGDFDRSLQVNLVGYFLCAR 120
Query: 189 LLFPSLIR-GSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSS 247
+IR G RII +NS VG K+ S GYS +K + +
Sbjct: 121 EFSKLMIRDGIQGRIIQINSKSGKVG-------------SKHNS--GYSAAKFGGVGLTQ 165
Query: 248 ILQKRLPAESGINVVCVSPG 267
L L AE GI V + G
Sbjct: 166 SLALDL-AEHGITVNSLMLG 184
|
Sorbitol 6-phosphate dehydrogenase (SDH, aka glucitol 6-phosphate dehydrogenase) catalyzes the NAD-dependent interconversion of D-fructose 6-phosphate to D-sorbitol 6-phosphate. SDH is a member of the classical SDRs, with the characteristic catalytic tetrad, but without a complete match to the typical NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|181120 PRK07792, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 8e-04
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
Query: 58 LPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKG 117
++ +VTG+ +G+GR A LA GA VV+ N A+ +E G
Sbjct: 5 TNTTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVV---NDVASALDASDVLDEIRAAG 61
Query: 118 LPLNIEAMEL-DLLSLDSVVRFSEAWNGRLGPLHVLINNAGI 158
A ++ + D +V + LG L +++NNAGI
Sbjct: 62 AKAVAVAGDISQRATADELVATAVG----LGGLDIVVNNAGI 99
|
Length = 306 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.001
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQ 107
V G+T +GR + R+L + G V VR+ A +L
Sbjct: 4 VVGATGKVGRHVVRELLDRGYQVRALVRDPSQAEKLEA 41
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.003
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQE 111
V G+T GR + ++L G V RN A +
Sbjct: 3 VIGATGKTGRRLVKELLARGHQVTALSRNPSKAPAPGVTPVQ 44
|
Length = 182 |
| >gnl|CDD|236110 PRK07831, PRK07831, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 67 TCIVTGST-SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
+VT + +GIG AR+ E GA VV++ + + E + E +EA+
Sbjct: 19 VVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLG----RVEAV 74
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI 158
D+ S V +A RLG L VL+NNAG+
Sbjct: 75 VCDVTSEAQVDALIDAAVERLGRLDVLVNNAGL 107
|
Length = 262 |
| >gnl|CDD|187591 cd05330, cyclohexanol_reductase_SDR_c, cyclohexanol reductases, including levodione reductase, classical (c) SDRs | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.004
Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 28/180 (15%)
Query: 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124
D ++TG SG+G A +LA+ GA + + +L ++ E L + +A
Sbjct: 3 DKVVLITGGGSGLGLATAVRLAKEGAKLSLV--------DLNEEGLEAAKAALLEIAPDA 54
Query: 125 MEL----DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVN 179
L D+ V + +A + G + NNAGI + F D +++ + +N
Sbjct: 55 EVLLIKADVSDEAQVEAYVDATVEQFGRIDGFFNNAGIEGKQNLTEDFGADEFDKVVSIN 114
Query: 180 HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
+RG + V VM G + V G R + GY+ +K
Sbjct: 115 ---------------LRGVFYGLEKVLKVMREQGSGMIVNTASVGGIRGVGNQSGYAAAK 159
|
Cyloclohexanol reductases,including (6R)-2,2,6-trimethyl-1,4-cyclohexanedione (levodione) reductase of Corynebacterium aquaticum, catalyze the reversible oxidoreduction of hydroxycyclohexanone derivatives. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 257 |
| >gnl|CDD|166421 PLN02780, PLN02780, ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Score = 37.9 bits (88), Expect = 0.004
Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 32/214 (14%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG T GIG+ A QLA G ++V+ RN ++ Q ++S I+ + +D
Sbjct: 57 LVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSK----TQIKTVVVD 112
Query: 129 LLSLD---SVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHM----QVNH 180
S D V R E G + VLINN G + P +F + EE + +VN
Sbjct: 113 -FSGDIDEGVKRIKETIEGL--DVGVLINNVG---VSYPYARFFHEVDEELLKNLIKVNV 166
Query: 181 LAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
++ + P +++ IIN+ S V + ++ + V Y+ +K
Sbjct: 167 EGTTKVTQAVLPGMLKRKKGAIINIGSGAAIV--IPSDPLYAV-----------YAATKA 213
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274
+FS L +SGI+V C P V+T +A
Sbjct: 214 YIDQFSRCLYVEY-KKSGIDVQCQVPLYVATKMA 246
|
Length = 320 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 298 | |||
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 100.0 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 100.0 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 100.0 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 100.0 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 100.0 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 100.0 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 100.0 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 100.0 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 100.0 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 100.0 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 100.0 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 100.0 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 100.0 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 100.0 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 100.0 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 100.0 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 100.0 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 100.0 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 100.0 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 100.0 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 100.0 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 100.0 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 100.0 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 100.0 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 100.0 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 100.0 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 100.0 | |
| PRK08643 | 256 | acetoin reductase; Validated | 100.0 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 100.0 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 100.0 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 100.0 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 100.0 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 100.0 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 100.0 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 100.0 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 100.0 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 100.0 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 100.0 | |
| PRK05717 | 255 | oxidoreductase; Validated | 100.0 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 100.0 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 100.0 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PLN00015 | 308 | protochlorophyllide reductase | 100.0 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 100.0 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 100.0 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 100.0 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 100.0 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 100.0 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 100.0 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 100.0 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 100.0 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 100.0 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 100.0 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 100.0 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 100.0 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 100.0 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 100.0 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 100.0 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 100.0 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 100.0 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 100.0 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 100.0 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 100.0 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 100.0 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 100.0 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 100.0 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 100.0 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 100.0 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 100.0 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 100.0 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 100.0 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 100.0 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 100.0 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 100.0 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 100.0 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 100.0 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 100.0 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 100.0 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 100.0 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 100.0 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 100.0 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.98 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.98 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.98 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.98 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.98 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.97 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.97 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.97 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.97 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.97 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.97 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.97 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.97 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.97 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.97 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.97 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.96 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.96 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.94 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.94 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 99.94 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.94 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.94 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.94 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 99.94 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.92 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.88 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.87 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.87 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 99.86 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.86 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.85 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.84 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.8 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.78 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.78 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.78 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.77 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.77 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.76 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.76 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.76 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.75 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.74 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.74 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.74 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.73 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.71 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.69 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.69 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.68 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.67 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.67 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.67 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.67 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 99.67 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.67 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.63 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.6 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.57 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.56 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.56 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.55 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.53 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.52 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.52 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.51 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 99.51 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.49 | |
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 99.49 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.48 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.47 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 99.44 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.43 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.41 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.4 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.4 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 99.38 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.33 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.31 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 99.29 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.28 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.27 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.21 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.21 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.18 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.18 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 99.18 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.17 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 99.16 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.15 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.11 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.05 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 98.97 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 98.97 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 98.95 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.91 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 98.9 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 98.9 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 98.83 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 98.83 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 98.81 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 98.78 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 98.74 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.7 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.66 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 98.66 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 98.64 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 98.6 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 98.6 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 98.58 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 98.41 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 98.31 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.3 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 98.25 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 98.21 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.18 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 98.15 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.14 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 98.13 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 98.07 | |
| PLN00106 | 323 | malate dehydrogenase | 97.97 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 97.93 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.9 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.9 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 97.87 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 97.87 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.85 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 97.8 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.79 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 97.77 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 97.75 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.72 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 97.71 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 97.64 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.6 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 97.58 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 97.57 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 97.5 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 97.5 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 97.47 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 97.44 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.43 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 97.43 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.41 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 97.39 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 97.38 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.35 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 97.31 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.3 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.3 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 97.3 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 97.29 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 97.28 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.25 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.25 | |
| KOG1197 | 336 | consensus Predicted quinone oxidoreductase [Energy | 97.24 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 97.2 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 97.19 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.19 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 97.17 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 97.16 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 97.15 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 97.12 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.11 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 97.08 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 97.07 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.07 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 97.06 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.05 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.05 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 97.01 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.0 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.0 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 96.96 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 96.96 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 96.95 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 96.84 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.84 | |
| TIGR02824 | 325 | quinone_pig3 putative NAD(P)H quinone oxidoreducta | 96.8 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 96.78 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 96.77 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.76 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 96.75 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 96.68 | |
| cd08268 | 328 | MDR2 Medium chain dehydrogenases/reductase (MDR)/z | 96.68 | |
| PF12242 | 78 | Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2 | 96.67 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.66 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.61 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.6 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.6 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.59 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.59 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 96.58 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 96.58 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 96.57 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 96.57 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 96.56 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.56 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 96.55 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 96.52 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.49 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 96.48 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.45 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.44 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 96.4 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.38 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 96.35 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 96.35 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 96.34 | |
| cd08244 | 324 | MDR_enoyl_red Possible enoyl reductase. Member ide | 96.34 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 96.33 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 96.32 | |
| PLN02494 | 477 | adenosylhomocysteinase | 96.3 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 96.29 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.28 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.28 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 96.25 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 96.24 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 96.23 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.23 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.21 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 96.2 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.2 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.19 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 96.18 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.18 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 96.15 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 96.15 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 96.13 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 96.12 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 96.11 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.04 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 96.03 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 96.03 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.99 | |
| cd08241 | 323 | QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t | 95.99 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 95.98 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 95.97 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.91 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.91 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.89 | |
| cd05286 | 320 | QOR2 Quinone oxidoreductase (QOR). Quinone oxidore | 95.88 | |
| cd05282 | 323 | ETR_like 2-enoyl thioester reductase-like. 2-enoyl | 95.85 | |
| cd08243 | 320 | quinone_oxidoreductase_like_1 Quinone oxidoreducta | 95.84 | |
| PTZ00354 | 334 | alcohol dehydrogenase; Provisional | 95.84 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.82 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 95.82 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 95.76 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.75 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 95.74 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 95.73 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 95.73 | |
| COG3007 | 398 | Uncharacterized paraquat-inducible protein B [Func | 95.73 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 95.72 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 95.69 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 95.69 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 95.67 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 95.65 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 95.63 | |
| PLN02602 | 350 | lactate dehydrogenase | 95.62 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.61 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 95.61 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 95.58 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 95.56 | |
| cd08291 | 324 | ETR_like_1 2-enoyl thioester reductase (ETR) like | 95.55 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.54 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 95.53 | |
| cd08250 | 329 | Mgc45594_like Mgc45594 gene product and other MDR | 95.53 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.52 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 95.51 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 95.51 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 95.49 | |
| cd08299 | 373 | alcohol_DH_class_I_II_IV class I, II, IV alcohol d | 95.48 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 95.47 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 95.45 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 95.43 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.39 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 95.37 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 95.37 | |
| cd08246 | 393 | crotonyl_coA_red crotonyl-CoA reductase. Crotonyl- | 95.36 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 95.35 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 95.33 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.31 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 95.3 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 95.3 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 95.3 | |
| PF12076 | 164 | Wax2_C: WAX2 C-terminal domain; InterPro: IPR02194 | 95.29 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 95.28 | |
| cd08248 | 350 | RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu | 95.26 | |
| PRK13771 | 334 | putative alcohol dehydrogenase; Provisional | 95.24 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 95.21 | |
| cd08297 | 341 | CAD3 Cinnamyl alcohol dehydrogenases (CAD). These | 95.2 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 95.19 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.15 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 95.15 | |
| TIGR01751 | 398 | crot-CoA-red crotonyl-CoA reductase. The enzyme mo | 95.14 | |
| PRK07411 | 390 | hypothetical protein; Validated | 95.13 | |
| KOG1196 | 343 | consensus Predicted NAD-dependent oxidoreductase [ | 95.1 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 95.07 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 95.07 | |
| smart00829 | 288 | PKS_ER Enoylreductase. Enoylreductase in Polyketid | 95.06 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 95.03 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 94.98 | |
| cd05280 | 325 | MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone | 94.97 | |
| PRK10754 | 327 | quinone oxidoreductase, NADPH-dependent; Provision | 94.95 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 94.94 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 94.94 | |
| cd08290 | 341 | ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi | 94.9 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 94.86 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 94.86 |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-47 Score=325.72 Aligned_cols=193 Identities=30% Similarity=0.482 Sum_probs=184.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
..+++++||||||+|||+++|++||++|++|++++|+.++++++.++++... +.++.++++|+++++++.++.++
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-----~v~v~vi~~DLs~~~~~~~l~~~ 77 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-----GVEVEVIPADLSDPEALERLEDE 77 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-----CceEEEEECcCCChhHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999998864 25899999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.++.+.||+||||||++..+++.+.+.++.++++++|+.+.+.|+++++|.|.+++.|+||||+|.+|+.+.
T Consensus 78 l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~------- 150 (265)
T COG0300 78 LKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPT------- 150 (265)
T ss_pred HHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCC-------
Confidence 9999899999999999999999999999999999999999999999999999999999999999999988776
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
|..+.|++||+++.+|+++|+.|+ +++||+|.+|+||+|.|++..
T Consensus 151 --------p~~avY~ATKa~v~~fSeaL~~EL-~~~gV~V~~v~PG~~~T~f~~ 195 (265)
T COG0300 151 --------PYMAVYSATKAFVLSFSEALREEL-KGTGVKVTAVCPGPTRTEFFD 195 (265)
T ss_pred --------cchHHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEEecCcccccccc
Confidence 899999999999999999999999 889999999999999999985
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-46 Score=318.81 Aligned_cols=198 Identities=25% Similarity=0.411 Sum_probs=188.2
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
+.+.++++|++||||||++|||+++|++||++|++++++|.|.+..+++++++++. | +++.+.||+++.+++.
T Consensus 30 ~~~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~------g-~~~~y~cdis~~eei~ 102 (300)
T KOG1201|consen 30 PKPLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI------G-EAKAYTCDISDREEIY 102 (300)
T ss_pred ccchhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc------C-ceeEEEecCCCHHHHH
Confidence 45788999999999999999999999999999999999999999999999998864 2 7999999999999999
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
+.++++++++|.+|+||||||+....++.+.++|++++.+++|+.|+|+.+|+|+|.|.+.+.|+||+|+|++|+.+.
T Consensus 103 ~~a~~Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~-- 180 (300)
T KOG1201|consen 103 RLAKKVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGP-- 180 (300)
T ss_pred HHHHHHHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcC--CCCCcEEEEeeCCccccCccCC
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLP--AESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~--~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
++...|++||+|+.+|.++|..|++ ..+||+.++|+|++++|+|..+
T Consensus 181 -------------~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~Tgmf~~ 229 (300)
T KOG1201|consen 181 -------------AGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFINTGMFDG 229 (300)
T ss_pred -------------ccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeeccccccCC
Confidence 7888899999999999999999985 4567999999999999999884
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=325.32 Aligned_cols=198 Identities=26% Similarity=0.365 Sum_probs=182.3
Q ss_pred CCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 58 LPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 58 ~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
..+..+.||+|||||||+|||+++|++|+++|++++++.|+.++++.+.+++++..+.. ++++++||++|++++++
T Consensus 5 ~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~----~v~~~~~Dvs~~~~~~~ 80 (282)
T KOG1205|consen 5 LFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLE----KVLVLQLDVSDEESVKK 80 (282)
T ss_pred ccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcC----ccEEEeCccCCHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999876543 69999999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
+++++...+|++|+||||||+......++.+.+++.++|++|++|++++||+++|+|++++.|+||+|||++|+.+.
T Consensus 81 ~~~~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~--- 157 (282)
T KOG1205|consen 81 FVEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPL--- 157 (282)
T ss_pred HHHHHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCC---
Confidence 99999999999999999999998777788899999999999999999999999999999999999999999977776
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCC--cEEEEeeCCccccCccCC
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESG--INVVCVSPGIVSTNVARD 276 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~g--I~v~~v~Pg~v~T~~~~~ 276 (298)
|....|+|||+|+.+|+++|+.|+ .+.+ |++ +|+||+|+|++...
T Consensus 158 ------------P~~~~Y~ASK~Al~~f~etLR~El-~~~~~~i~i-~V~PG~V~Te~~~~ 204 (282)
T KOG1205|consen 158 ------------PFRSIYSASKHALEGFFETLRQEL-IPLGTIIII-LVSPGPIETEFTGK 204 (282)
T ss_pred ------------CcccccchHHHHHHHHHHHHHHHh-hccCceEEE-EEecCceeecccch
Confidence 777799999999999999999999 6666 666 99999999997643
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-46 Score=310.39 Aligned_cols=192 Identities=29% Similarity=0.402 Sum_probs=180.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.+++|+++|||||||||.++|++|++.|++|++++|+.++++++.+++.+ ..+..+..|++|.++++++++.
T Consensus 3 ~~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~--------~~~~~~~~DVtD~~~~~~~i~~ 74 (246)
T COG4221 3 TLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA--------GAALALALDVTDRAAVEAAIEA 74 (246)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc--------CceEEEeeccCCHHHHHHHHHH
Confidence 46679999999999999999999999999999999999999999988854 2689999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.++||+||+||||||.....++.+.+.++|++++++|+.|.++.+++++|.|.+++.|+|||+||.+
T Consensus 75 ~~~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiA------------ 142 (246)
T COG4221 75 LPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIA------------ 142 (246)
T ss_pred HHHhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccc------------
Confidence 99999999999999999988899999999999999999999999999999999999999999999997
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+..+||+...|++||+++.+|++.|+.|+ .+++|||.+|+||.|.|..+..+
T Consensus 143 ---G~~~y~~~~vY~ATK~aV~~fs~~LR~e~-~g~~IRVt~I~PG~v~~~~~s~v 194 (246)
T COG4221 143 ---GRYPYPGGAVYGATKAAVRAFSLGLRQEL-AGTGIRVTVISPGLVETTEFSTV 194 (246)
T ss_pred ---ccccCCCCccchhhHHHHHHHHHHHHHHh-cCCCeeEEEecCceecceecccc
Confidence 55666999999999999999999999999 88999999999999988766554
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=289.01 Aligned_cols=212 Identities=27% Similarity=0.341 Sum_probs=191.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+..|.++||||++|||++++..|+++|++|++++++....+++...+... .....++||++++++++..+++.
T Consensus 12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~-------~~h~aF~~DVS~a~~v~~~l~e~ 84 (256)
T KOG1200|consen 12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGY-------GDHSAFSCDVSKAHDVQNTLEEM 84 (256)
T ss_pred HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCC-------CccceeeeccCcHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999888887776431 25677899999999999999999
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhh--cCCCCeEEEEcCCccccCCCCcccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLI--RGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~--~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
.+.+|.+++||||||+-....+..+..++|++.+.+|+.|.|+++|++...|. ++++++||||||+.|..+.
T Consensus 85 ~k~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN------ 158 (256)
T KOG1200|consen 85 EKSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGN------ 158 (256)
T ss_pred HHhcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhccccc------
Confidence 99999999999999999888889999999999999999999999999999954 3455699999999998887
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHHhhhhccc-CCCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~p~~~~-~pe~ 297 (298)
-++..|++||+++.+|+++.++|+ +.+|||||+|+||+|.|||++.+|+. .+.+...+|++|+ .+||
T Consensus 159 ---------~GQtnYAAsK~GvIgftktaArEl-a~knIrvN~VlPGFI~tpMT~~mp~~v~~ki~~~iPmgr~G~~Ee 227 (256)
T KOG1200|consen 159 ---------FGQTNYAASKGGVIGFTKTAAREL-ARKNIRVNVVLPGFIATPMTEAMPPKVLDKILGMIPMGRLGEAEE 227 (256)
T ss_pred ---------ccchhhhhhcCceeeeeHHHHHHH-hhcCceEeEeccccccChhhhhcCHHHHHHHHccCCccccCCHHH
Confidence 456669999999999999999999 88999999999999999999999765 4567779999999 7765
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=301.66 Aligned_cols=214 Identities=23% Similarity=0.292 Sum_probs=187.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.. +.++.++++|++|++++++++++
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~i~~~~~~ 79 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-----NVDVSYIVADLTKREDLERTVKE 79 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999888887776532 23688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+. ++|++|++|||||.....++.+.+.++|++.+++|+.++++++++++|+|++++.|+||++||.++..+.
T Consensus 80 ~~-~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~~------- 151 (263)
T PRK08339 80 LK-NIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPI------- 151 (263)
T ss_pred HH-hhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCCC-------
Confidence 86 5899999999999877777889999999999999999999999999999998888999999999765544
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------------hHHHHHHHHhhh
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------------PKIVQAAYHLIP 289 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------------~~~~~~~~~~~p 289 (298)
+....|+++|+|+.+|+++|+.|+ .++|||||+|+||+|+|++.... ++..+.....+|
T Consensus 152 --------~~~~~y~asKaal~~l~~~la~el-~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (263)
T PRK08339 152 --------PNIALSNVVRISMAGLVRTLAKEL-GPKGITVNGIMPGIIRTDRVIQLAQDRAKREGKSVEEALQEYAKPIP 222 (263)
T ss_pred --------CcchhhHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCcCccHHHHHHHHhhhhccCCCHHHHHHHHhccCC
Confidence 777889999999999999999999 88999999999999999986432 122334445678
Q ss_pred hccc-CCCC
Q 022369 290 YFIF-NPQE 297 (298)
Q Consensus 290 ~~~~-~pe~ 297 (298)
++++ +|||
T Consensus 223 ~~r~~~p~d 231 (263)
T PRK08339 223 LGRLGEPEE 231 (263)
T ss_pred cccCcCHHH
Confidence 8887 7765
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=291.61 Aligned_cols=209 Identities=18% Similarity=0.182 Sum_probs=177.2
Q ss_pred CCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++||++|||||+ +|||+++|++|+++|++|++++|+ ++.++..+++.. .++.++++|++|++++++++
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~-~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~v~~~~ 74 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN-DRMKKSLQKLVD--------EEDLLVECDVASDESIERAF 74 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc-hHHHHHHHhhcc--------CceeEEeCCCCCHHHHHHHH
Confidence 3678999999999 899999999999999999999998 344443333321 25788999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCC----CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSI----GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++.+++|++|+||||||+... +++.+.+.++|++.+++|+.+++.+++.++|+|.+ +|+||++||..+..+.
T Consensus 75 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~--~g~Iv~iss~~~~~~~- 151 (252)
T PRK06079 75 ATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNP--GASIVTLTYFGSERAI- 151 (252)
T ss_pred HHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhccc--CceEEEEeccCccccC-
Confidence 9999999999999999998653 56788999999999999999999999999999964 4899999998755443
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhcc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFI 292 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~ 292 (298)
+.+..|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.... ++..+......|+.+
T Consensus 152 --------------~~~~~Y~asKaal~~l~~~la~el-~~~gI~vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r 216 (252)
T PRK06079 152 --------------PNYNVMGIAKAALESSVRYLARDL-GKKGIRVNAISAGAVKTLAVTGIKGHKDLLKESDSRTVDGV 216 (252)
T ss_pred --------------CcchhhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccccccccCCChHHHHHHHHhcCcccC
Confidence 778889999999999999999999 88999999999999999986543 233344455678887
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 217 ~~~ped 222 (252)
T PRK06079 217 GVTIEE 222 (252)
T ss_pred CCCHHH
Confidence 7 7775
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=293.80 Aligned_cols=210 Identities=16% Similarity=0.163 Sum_probs=174.5
Q ss_pred CCCCEEEEeCCCC--chHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTS--GIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 63 ~~~k~vlITGas~--GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++||++|||||++ |||+++|++|+++|++|++++|+.+..+. .+++.+.. + ...++++|++|+++++++++
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~-~~~~~~~~---g---~~~~~~~Dv~d~~~v~~~~~ 77 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKR-VKPLAESL---G---SDFVLPCDVEDIASVDAVFE 77 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHH-HHHHHHhc---C---CceEEeCCCCCHHHHHHHHH
Confidence 5789999999996 99999999999999999999998644333 33333221 1 23578999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCC----CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 141 AWNGRLGPLHVLINNAGIFSI----GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
++.+++|++|+||||||+... .++.+.+.++|++.+++|+.++++++|+++|+|.+ +|+|||+||.++..+.
T Consensus 78 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~--~G~Iv~isS~~~~~~~-- 153 (271)
T PRK06505 78 ALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPD--GGSMLTLTYGGSTRVM-- 153 (271)
T ss_pred HHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhcc--CceEEEEcCCCccccC--
Confidence 999999999999999998643 46778999999999999999999999999999974 4899999998765443
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH---HHHHHHHhhhhccc
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK---IVQAAYHLIPYFIF 293 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~---~~~~~~~~~p~~~~ 293 (298)
|.+..|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|++.+...+ ..+......|+.++
T Consensus 154 -------------~~~~~Y~asKaAl~~l~r~la~el-~~~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~~~~p~~r~ 219 (271)
T PRK06505 154 -------------PNYNVMGVAKAALEASVRYLAADY-GPQGIRVNAISAGPVRTLAGAGIGDARAIFSYQQRNSPLRRT 219 (271)
T ss_pred -------------CccchhhhhHHHHHHHHHHHHHHH-hhcCeEEEEEecCCccccccccCcchHHHHHHHhhcCCcccc
Confidence 777889999999999999999999 8899999999999999998754422 12223346788776
Q ss_pred -CCCC
Q 022369 294 -NPQE 297 (298)
Q Consensus 294 -~pe~ 297 (298)
+|||
T Consensus 220 ~~pee 224 (271)
T PRK06505 220 VTIDE 224 (271)
T ss_pred CCHHH
Confidence 7765
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=288.13 Aligned_cols=214 Identities=19% Similarity=0.206 Sum_probs=177.0
Q ss_pred CCCCCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 59 PLPPVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 59 ~~~~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
+..+++||++|||||+ +|||+++|++|+++|++|++++|+.+..+ ..+++.+... .+.+++||++|+++++
T Consensus 4 ~~~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~-~~~~~~~~~~------~~~~~~~D~~~~~~v~ 76 (258)
T PRK07533 4 PLLPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARP-YVEPLAEELD------APIFLPLDVREPGQLE 76 (258)
T ss_pred cccccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHH-HHHHHHHhhc------cceEEecCcCCHHHHH
Confidence 4556889999999999 59999999999999999999999865432 2233333221 3467899999999999
Q ss_pred HHHHHHhcccCCccEEEEccCCCCC----CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcccc
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSI----GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYV 212 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~ 212 (298)
++++++.+++|++|+||||||+... .++.+.+.++|++.+++|+.+++++++.++|.|++ +|+||++||..+..
T Consensus 77 ~~~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~--~g~Ii~iss~~~~~ 154 (258)
T PRK07533 77 AVFARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTN--GGSLLTMSYYGAEK 154 (258)
T ss_pred HHHHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhcc--CCEEEEEecccccc
Confidence 9999999999999999999998643 45778899999999999999999999999999964 58999999986543
Q ss_pred CCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhh
Q 022369 213 GFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIP 289 (298)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p 289 (298)
+ .+.+..|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|+|.+.. .+..+......|
T Consensus 155 ~---------------~~~~~~Y~asKaal~~l~~~la~el-~~~gI~Vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p 218 (258)
T PRK07533 155 V---------------VENYNLMGPVKAALESSVRYLAAEL-GPKGIRVHAISPGPLKTRAASGIDDFDALLEDAAERAP 218 (258)
T ss_pred C---------------CccchhhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCCcCChhhhccCCcHHHHHHHHhcCC
Confidence 3 3677889999999999999999999 88899999999999999997653 233344455678
Q ss_pred hccc-CCCC
Q 022369 290 YFIF-NPQE 297 (298)
Q Consensus 290 ~~~~-~pe~ 297 (298)
+.++ +|||
T Consensus 219 ~~r~~~p~d 227 (258)
T PRK07533 219 LRRLVDIDD 227 (258)
T ss_pred cCCCCCHHH
Confidence 7776 6654
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=287.53 Aligned_cols=212 Identities=23% Similarity=0.360 Sum_probs=181.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|+.. ++..+++++. +.++.++++|+++++++++++++
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEAL------GRKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHc------CCeEEEEEeCCCCHHHHHHHHHH
Confidence 577999999999999999999999999999999998642 3333344321 23788999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+.+|++|+||||||+....++.+.+.++|++.+++|+.+++.++++++|+|++++ +|+||++||..++.+.
T Consensus 77 ~~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~------ 150 (251)
T PRK12481 77 AVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGG------ 150 (251)
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcCCC------
Confidence 999999999999999998777788899999999999999999999999999998765 6899999999876654
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~~~~-~pe 296 (298)
+....|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++.+... +..+.....+|..++ +||
T Consensus 151 ---------~~~~~Y~asK~a~~~l~~~la~e~-~~~girvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~pe 220 (251)
T PRK12481 151 ---------IRVPSYTASKSAVMGLTRALATEL-SQYNINVNAIAPGYMATDNTAALRADTARNEAILERIPASRWGTPD 220 (251)
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCCCccCchhhcccChHHHHHHHhcCCCCCCcCHH
Confidence 566789999999999999999999 889999999999999999976542 223344557788777 776
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 221 e 221 (251)
T PRK12481 221 D 221 (251)
T ss_pred H
Confidence 5
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=291.46 Aligned_cols=211 Identities=17% Similarity=0.182 Sum_probs=174.1
Q ss_pred CCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++||++|||||+ +|||+++|++|+++|++|++++|+.+ .++..+++.+... .. .++++|++|++++++++
T Consensus 2 ~l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~~-----~~-~~~~~Dv~d~~~v~~~~ 74 (274)
T PRK08415 2 IMKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA-LKKRVEPIAQELG-----SD-YVYELDVSKPEHFKSLA 74 (274)
T ss_pred ccCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH-HHHHHHHHHHhcC-----Cc-eEEEecCCCHHHHHHHH
Confidence 3568999999997 89999999999999999999999853 3333444433221 13 57899999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCC----CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSI----GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++.+++|++|+||||||+... .++.+.+.++|++.+++|+.+++++++.++|.|.+ +|+|||+||.++..+.
T Consensus 75 ~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~--~g~Iv~isS~~~~~~~- 151 (274)
T PRK08415 75 ESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLND--GASVLTLSYLGGVKYV- 151 (274)
T ss_pred HHHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhcc--CCcEEEEecCCCccCC-
Confidence 9999999999999999998642 56788999999999999999999999999999975 4899999998755443
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH---HHHHHHhhhhcc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI---VQAAYHLIPYFI 292 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~---~~~~~~~~p~~~ 292 (298)
+.+..|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+...+. .+......|+.+
T Consensus 152 --------------~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~r 216 (274)
T PRK08415 152 --------------PHYNVMGVAKAALESSVRYLAVDL-GKKGIRVNAISAGPIKTLAASGIGDFRMILKWNEINAPLKK 216 (274)
T ss_pred --------------CcchhhhhHHHHHHHHHHHHHHHh-hhcCeEEEEEecCccccHHHhccchhhHHhhhhhhhCchhc
Confidence 677889999999999999999999 88999999999999999986544321 111223568777
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 217 ~~~ped 222 (274)
T PRK08415 217 NVSIEE 222 (274)
T ss_pred cCCHHH
Confidence 6 7765
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=286.98 Aligned_cols=217 Identities=22% Similarity=0.292 Sum_probs=188.1
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||.++|++|+++|++|++++|+.++++++.+++... +.++..+++|++|+++++++++
T Consensus 5 ~~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T PRK05867 5 FDLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTS------GGKVVPVCCDVSQHQQVTSMLD 78 (253)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHHHH
Confidence 4578999999999999999999999999999999999999988888777542 1368889999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+.+|++|+||||||+....++.+.+.++|++.+++|+.+++.++++++|+|.+++ +|+||++||..+.....
T Consensus 79 ~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~---- 154 (253)
T PRK05867 79 QVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINV---- 154 (253)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCC----
Confidence 9999999999999999998777788899999999999999999999999999998764 57999999987543210
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHHhhhhccc-CCCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~~~-~pe~ 297 (298)
.+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+..++..+.+....|++++ +|||
T Consensus 155 ---------~~~~~~Y~asKaal~~~~~~la~e~-~~~gI~vn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~r~~~p~~ 223 (253)
T PRK05867 155 ---------PQQVSHYCASKAAVIHLTKAMAVEL-APHKIRVNSVSPGYILTELVEPYTEYQPLWEPKIPLGRLGRPEE 223 (253)
T ss_pred ---------CCCccchHHHHHHHHHHHHHHHHHH-hHhCeEEEEeecCCCCCcccccchHHHHHHHhcCCCCCCcCHHH
Confidence 0234679999999999999999999 888999999999999999987666555555567788777 7765
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=287.13 Aligned_cols=219 Identities=27% Similarity=0.319 Sum_probs=187.2
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
...+.||+++||||++|||+++|++|++.|++|++++|+.+.+++...++...... +.++..+.||+++++++++++
T Consensus 3 ~~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~~~~l~ 79 (270)
T KOG0725|consen 3 GGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYT---GGKVLAIVCDVSKEVDVEKLV 79 (270)
T ss_pred CccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCC---CCeeEEEECcCCCHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999888764332 357999999999999999999
Q ss_pred HHHhcc-cCCccEEEEccCCCCCC-CCCccChhhHHHHHhhhchH-HHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 140 EAWNGR-LGPLHVLINNAGIFSIG-EPQKFSKDGYEEHMQVNHLA-PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 140 ~~~~~~-~g~idilVnnag~~~~~-~~~~~~~~~~~~~~~vN~~~-~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
++..++ +|+||+||||||..... ++.+.+.|+|++++++|+.| .+.+++.+.|+++++++|.|+++||..+..+.
T Consensus 80 ~~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~-- 157 (270)
T KOG0725|consen 80 EFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPG-- 157 (270)
T ss_pred HHHHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCC--
Confidence 999999 79999999999998755 68999999999999999995 77777777787778789999999999876654
Q ss_pred cccccccccccCCCCc-ccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC-Cch----HHHHH---HHHh
Q 022369 217 TEDMNVVSGRRKYTSL-MGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR-DLP----KIVQA---AYHL 287 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~-~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~-~~~----~~~~~---~~~~ 287 (298)
+.. ..|+++|+|+.+|+++++.|+ .++|||||+|+||.|.|++.. ... +.... ....
T Consensus 158 -------------~~~~~~Y~~sK~al~~ltr~lA~El-~~~gIRvN~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~ 223 (270)
T KOG0725|consen 158 -------------PGSGVAYGVSKAALLQLTRSLAKEL-AKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGA 223 (270)
T ss_pred -------------CCCcccchhHHHHHHHHHHHHHHHH-hhcCcEEEEeecCcEeCCccccccccchhhHHhhhhccccc
Confidence 333 789999999999999999999 899999999999999999822 111 22222 2236
Q ss_pred hhhccc-CCCC
Q 022369 288 IPYFIF-NPQE 297 (298)
Q Consensus 288 ~p~~~~-~pe~ 297 (298)
+|.+++ +|+|
T Consensus 224 ~p~gr~g~~~e 234 (270)
T KOG0725|consen 224 VPLGRVGTPEE 234 (270)
T ss_pred cccCCccCHHH
Confidence 688888 7765
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=287.75 Aligned_cols=211 Identities=14% Similarity=0.150 Sum_probs=175.9
Q ss_pred CCCCCEEEEeCCCC--chHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTS--GIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~--GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++||++|||||++ |||+++|++|+++|++|++++|+ ++.++..+++.+... ...++++|++|++++++++
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~-~~~~~~~~~l~~~~g------~~~~~~~Dv~~~~~v~~~~ 77 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS-EVLEKRVKPLAEEIG------CNFVSELDVTNPKSISNLF 77 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc-hHHHHHHHHHHHhcC------CceEEEccCCCHHHHHHHH
Confidence 46789999999997 99999999999999999999988 344445555544321 2246789999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCC----CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSI----GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++.+++|++|+||||||+... .++.+.+.++|++.+++|+.+++.+++.++|+|.+ +|+|||+||..+..+.
T Consensus 78 ~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~--~G~Iv~isS~~~~~~~- 154 (260)
T PRK06603 78 DDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHD--GGSIVTLTYYGAEKVI- 154 (260)
T ss_pred HHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CceEEEEecCccccCC-
Confidence 9999999999999999998642 46778899999999999999999999999999964 5899999998755443
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhcc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFI 292 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~ 292 (298)
+.+..|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+.. ++..+......|+.+
T Consensus 155 --------------~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r 219 (260)
T PRK06603 155 --------------PNYNVMGVAKAALEASVKYLANDM-GENNIRVNAISAGPIKTLASSAIGDFSTMLKSHAATAPLKR 219 (260)
T ss_pred --------------CcccchhhHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcCcchhhhcCCCcHHHHHHHHhcCCcCC
Confidence 777889999999999999999999 88999999999999999986532 233334445678888
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 220 ~~~ped 225 (260)
T PRK06603 220 NTTQED 225 (260)
T ss_pred CCCHHH
Confidence 7 7765
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=287.74 Aligned_cols=212 Identities=16% Similarity=0.144 Sum_probs=175.5
Q ss_pred CCCCCEEEEeCC--CCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGS--TSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGa--s~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++||++||||| ++|||+++|++|+++|++|++++|+ ++.++..+++.+... ....++||++|++++++++
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~Dv~~~~~v~~~~ 75 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGAELAFTYVV-DKLEERVRKMAAELD------SELVFRCDVASDDEINQVF 75 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc-HHHHHHHHHHHhccC------CceEEECCCCCHHHHHHHH
Confidence 477899999997 6799999999999999999999886 344444445443221 3457899999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCC----C-CCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIG----E-PQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~----~-~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~ 214 (298)
+++.+++|++|+||||||+.... + +++.+.++|++.+++|+.+++++++.++|.|+++ +|+||++||..+..+.
T Consensus 76 ~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~-~g~Iv~iss~~~~~~~ 154 (261)
T PRK08690 76 ADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGR-NSAIVALSYLGAVRAI 154 (261)
T ss_pred HHHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhc-CcEEEEEcccccccCC
Confidence 99999999999999999986532 2 3567889999999999999999999999999754 4899999998765443
Q ss_pred CCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhhc
Q 022369 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPYF 291 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~~ 291 (298)
|.+..|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++..... +..+...+..|+.
T Consensus 155 ---------------~~~~~Y~asKaal~~l~~~la~e~-~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~ 218 (261)
T PRK08690 155 ---------------PNYNVMGMAKASLEAGIRFTAACL-GKEGIRCNGISAGPIKTLAASGIADFGKLLGHVAAHNPLR 218 (261)
T ss_pred ---------------CCcccchhHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccchhhhcCCchHHHHHHHhhcCCCC
Confidence 778889999999999999999999 889999999999999999876542 2233444567888
Q ss_pred cc-CCCC
Q 022369 292 IF-NPQE 297 (298)
Q Consensus 292 ~~-~pe~ 297 (298)
++ +|||
T Consensus 219 r~~~pee 225 (261)
T PRK08690 219 RNVTIEE 225 (261)
T ss_pred CCCCHHH
Confidence 87 7775
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=286.48 Aligned_cols=216 Identities=23% Similarity=0.340 Sum_probs=187.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.... .+.++.++++|++|++++++++++
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDV----AGARVLAVPADVTDAASVAAAVAA 79 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcc----CCceEEEEEccCCCHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999988888876521 124788999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+.+|++|+||||||+....++.+.+.++|++.+++|+.+++.++++++|.|++++.|+||++||..+..+.
T Consensus 80 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 152 (260)
T PRK07063 80 AEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKII------- 152 (260)
T ss_pred HHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCC-------
Confidence 9999999999999999876667778899999999999999999999999999998888999999998765544
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------hH-HHHHHHHhhhhccc-
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------PK-IVQAAYHLIPYFIF- 293 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------~~-~~~~~~~~~p~~~~- 293 (298)
+....|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++.+.. ++ ..+......|+.++
T Consensus 153 --------~~~~~Y~~sKaa~~~~~~~la~el-~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 223 (260)
T PRK07063 153 --------PGCFPYPVAKHGLLGLTRALGIEY-AARNVRVNAIAPGYIETQLTEDWWNAQPDPAAARAETLALQPMKRIG 223 (260)
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEeeCCccChhhhhhhhccCChHHHHHHHHhcCCCCCCC
Confidence 677789999999999999999999 78899999999999999996532 11 12233456788777
Q ss_pred CCCC
Q 022369 294 NPQE 297 (298)
Q Consensus 294 ~pe~ 297 (298)
+|||
T Consensus 224 ~~~~ 227 (260)
T PRK07063 224 RPEE 227 (260)
T ss_pred CHHH
Confidence 7765
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=287.12 Aligned_cols=212 Identities=17% Similarity=0.172 Sum_probs=177.1
Q ss_pred CCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCch--HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 62 PVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLK--AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 62 ~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
+++||+++||||+ +|||+++|++|+++|++|++++|+.+ +.++..+++.+.. ..+.++++|++|++++++
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~d~~~v~~ 76 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPL------NPSLFLPCDVQDDAQIEE 76 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhcc------CcceEeecCcCCHHHHHH
Confidence 4678999999986 89999999999999999999877643 3445555554321 246788999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCC----CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFS----IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~----~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~ 213 (298)
+++++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.++++++++++|.|++ +|+||++||..+..+
T Consensus 77 ~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~--~g~Iv~isS~~~~~~ 154 (258)
T PRK07370 77 TFETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSE--GGSIVTLTYLGGVRA 154 (258)
T ss_pred HHHHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhh--CCeEEEEeccccccC
Confidence 99999999999999999999864 256788899999999999999999999999999975 489999999875544
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhh
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPY 290 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~ 290 (298)
. +.+..|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+.+ ++..+......|+
T Consensus 155 ~---------------~~~~~Y~asKaal~~l~~~la~el-~~~gI~Vn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~ 218 (258)
T PRK07370 155 I---------------PNYNVMGVAKAALEASVRYLAAEL-GPKNIRVNAISAGPIRTLASSAVGGILDMIHHVEEKAPL 218 (258)
T ss_pred C---------------cccchhhHHHHHHHHHHHHHHHHh-CcCCeEEEEEecCcccCchhhccccchhhhhhhhhcCCc
Confidence 3 778889999999999999999999 88999999999999999987543 2333334446787
Q ss_pred ccc-CCCC
Q 022369 291 FIF-NPQE 297 (298)
Q Consensus 291 ~~~-~pe~ 297 (298)
.++ +|||
T Consensus 219 ~r~~~~~d 226 (258)
T PRK07370 219 RRTVTQTE 226 (258)
T ss_pred CcCCCHHH
Confidence 777 6664
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=291.42 Aligned_cols=218 Identities=17% Similarity=0.180 Sum_probs=176.5
Q ss_pred CCCCCCEEEEeCC--CCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhh-------cCCCCCccEEEEEcCC--
Q 022369 61 PPVNDLTCIVTGS--TSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEW-------SGKGLPLNIEAMELDL-- 129 (298)
Q Consensus 61 ~~~~~k~vlITGa--s~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~D~-- 129 (298)
.+++||++||||| ++|||+++|++|++.|++|++ +|+.++++++..++++.. ...........+.+|+
T Consensus 5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 83 (303)
T PLN02730 5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVF 83 (303)
T ss_pred cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceec
Confidence 3589999999999 899999999999999999999 899999999887775421 0000011246788999
Q ss_pred CC------------------HHHHHHHHHHHhcccCCccEEEEccCCCC--CCCCCccChhhHHHHHhhhchHHHHHHHH
Q 022369 130 LS------------------LDSVVRFSEAWNGRLGPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHLAPALLSIL 189 (298)
Q Consensus 130 s~------------------~~~v~~~~~~~~~~~g~idilVnnag~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ 189 (298)
++ +++++++++++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.+++.++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~ 163 (303)
T PLN02730 84 DTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQH 163 (303)
T ss_pred CccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 43 44899999999999999999999998643 36788999999999999999999999999
Q ss_pred HhhhhhcCCCCeEEEEcCCccccCCCCcccccccccccCCCCc-ccchhhHHHHHHHHHHHHHHcCCC-CCcEEEEeeCC
Q 022369 190 LFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSL-MGYSGSKLAQIKFSSILQKRLPAE-SGINVVCVSPG 267 (298)
Q Consensus 190 ~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~asKaa~~~l~~~l~~e~~~~-~gI~v~~v~Pg 267 (298)
++|.|+++ |+|||+||..+..+. |.+ ..|++||+|+.+|+++|+.|+ .+ +|||||+|+||
T Consensus 164 ~~p~m~~~--G~II~isS~a~~~~~---------------p~~~~~Y~asKaAl~~l~~~la~El-~~~~gIrVn~V~PG 225 (303)
T PLN02730 164 FGPIMNPG--GASISLTYIASERII---------------PGYGGGMSSAKAALESDTRVLAFEA-GRKYKIRVNTISAG 225 (303)
T ss_pred HHHHHhcC--CEEEEEechhhcCCC---------------CCCchhhHHHHHHHHHHHHHHHHHh-CcCCCeEEEEEeeC
Confidence 99999763 899999998765543 544 479999999999999999999 64 79999999999
Q ss_pred ccccCccCCch---HHHHHHHHhhhhccc-CCCC
Q 022369 268 IVSTNVARDLP---KIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 268 ~v~T~~~~~~~---~~~~~~~~~~p~~~~-~pe~ 297 (298)
+|+|+|.+..+ +..+......|+.++ +|+|
T Consensus 226 ~v~T~~~~~~~~~~~~~~~~~~~~pl~r~~~pee 259 (303)
T PLN02730 226 PLGSRAAKAIGFIDDMIEYSYANAPLQKELTADE 259 (303)
T ss_pred CccCchhhcccccHHHHHHHHhcCCCCCCcCHHH
Confidence 99999986532 222222334576666 6654
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=283.72 Aligned_cols=196 Identities=22% Similarity=0.343 Sum_probs=178.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+..+. .++.++++|++|+++++++++
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~ 79 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPG----ARLLAARCDVLDEADVAAFAA 79 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCC----ceEEEEEecCCCHHHHHHHHH
Confidence 3578999999999999999999999999999999999999998888887664322 368899999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.+|++|+||||||+....++.+.+.++|++.+++|+.+++.+++.++|.|++++.|+||++||..+..+.
T Consensus 80 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 153 (265)
T PRK07062 80 AVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPE------ 153 (265)
T ss_pred HHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCC------
Confidence 99999999999999999987778888999999999999999999999999999998888999999999876554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+.
T Consensus 154 ---------~~~~~y~asKaal~~~~~~la~e~-~~~gi~v~~i~PG~v~t~~~~~ 199 (265)
T PRK07062 154 ---------PHMVATSAARAGLLNLVKSLATEL-APKGVRVNSILLGLVESGQWRR 199 (265)
T ss_pred ---------CCchHhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCccccchhhh
Confidence 677889999999999999999999 7889999999999999998653
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=284.41 Aligned_cols=213 Identities=16% Similarity=0.169 Sum_probs=174.8
Q ss_pred CCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+++||++|||||+ +|||+++|++|+++|++|++++|+.... +..+++.+... +.++.++++|++|++++++++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~-~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~ 78 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLE-KEVRELADTLE----GQESLLLPCDVTSDEEITACF 78 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccch-HHHHHHHHHcC----CCceEEEecCCCCHHHHHHHH
Confidence 5678999999997 8999999999999999999998764221 22222322221 136888999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCC----CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFS----IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~----~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.+++.+++.++|+|.+ +|+|||+||..+..+.
T Consensus 79 ~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~g~Iv~isS~~~~~~~- 155 (257)
T PRK08594 79 ETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTE--GGSIVTLTYLGGERVV- 155 (257)
T ss_pred HHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhccc--CceEEEEcccCCccCC-
Confidence 999999999999999999864 246678899999999999999999999999999965 5899999998865544
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhcc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFI 292 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~ 292 (298)
+.+..|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+.. ++..+......|+.+
T Consensus 156 --------------~~~~~Y~asKaal~~l~~~la~el-~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r 220 (257)
T PRK08594 156 --------------QNYNVMGVAKASLEASVKYLANDL-GKDGIRVNAISAGPIRTLSAKGVGGFNSILKEIEERAPLRR 220 (257)
T ss_pred --------------CCCchhHHHHHHHHHHHHHHHHHh-hhcCCEEeeeecCcccCHhHhhhccccHHHHHHhhcCCccc
Confidence 677889999999999999999999 88899999999999999986533 222233445667777
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 221 ~~~p~~ 226 (257)
T PRK08594 221 TTTQEE 226 (257)
T ss_pred cCCHHH
Confidence 6 7765
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=283.12 Aligned_cols=210 Identities=11% Similarity=0.136 Sum_probs=173.4
Q ss_pred CCCCEEEEeCCCC--chHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTS--GIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 63 ~~~k~vlITGas~--GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++||++|||||++ |||+++|++|+++|++|++++|+ +++++..+++.... ..+.++++|++|+++++++++
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~-~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~v~~~~~ 76 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEFAAQL------GSDIVLPCDVAEDASIDAMFA 76 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc-hhHHHHHHHHHhcc------CCceEeecCCCCHHHHHHHHH
Confidence 6789999999986 99999999999999999999998 45555556655432 145678999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCC-----CCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGE-----PQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~-----~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
++.+++|++|+||||||+..... +.+.+.++|++.+++|+.+++.+++.++|.|. ++|+|||+||..+..+.
T Consensus 77 ~~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--~~g~Iv~iss~~~~~~~- 153 (262)
T PRK07984 77 ELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLN--PGSALLTLSYLGAERAI- 153 (262)
T ss_pred HHHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhc--CCcEEEEEecCCCCCCC-
Confidence 99999999999999999864322 45678999999999999999999999998664 34899999998754433
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH---HHHHHHHhhhhcc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK---IVQAAYHLIPYFI 292 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~---~~~~~~~~~p~~~ 292 (298)
+.+..|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|++....++ ..+......|+.+
T Consensus 154 --------------~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r 218 (262)
T PRK07984 154 --------------PNYNVMGLAKASLEANVRYMANAM-GPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR 218 (262)
T ss_pred --------------CCcchhHHHHHHHHHHHHHHHHHh-cccCcEEeeeecCcccchHHhcCCchHHHHHHHHHcCCCcC
Confidence 777889999999999999999999 8889999999999999998654322 2233344667777
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 219 ~~~ped 224 (262)
T PRK07984 219 TVTIED 224 (262)
T ss_pred CCCHHH
Confidence 7 7664
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-39 Score=281.16 Aligned_cols=211 Identities=15% Similarity=0.146 Sum_probs=169.7
Q ss_pred CCCCCEEEEeCC--CCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGS--TSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGa--s~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.+++|++||||| ++|||+++|++|+++|++|++++|... .++..+++.+..+ ...++++|++|++++++++
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~Dv~d~~~v~~~~ 75 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAEFG------SDLVFPCDVASDEQIDALF 75 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchH-HHHHHHHHHHhcC------CcceeeccCCCHHHHHHHH
Confidence 467899999996 689999999999999999999876422 2222233333221 2346899999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCC----C-CCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIG----E-PQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~----~-~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~ 214 (298)
+++.+++|++|+||||||+.... + +++.+.++|++.+++|+.++++++++++|+|. ++|+|||+||..+..+.
T Consensus 76 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~--~~g~Ii~iss~~~~~~~ 153 (260)
T PRK06997 76 ASLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLS--DDASLLTLSYLGAERVV 153 (260)
T ss_pred HHHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCceEEEEeccccccCC
Confidence 99999999999999999986432 2 35678899999999999999999999999994 34899999998754433
Q ss_pred CCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhc
Q 022369 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYF 291 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~ 291 (298)
+.+..|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.... .+..+......|++
T Consensus 154 ---------------~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~i~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~ 217 (260)
T PRK06997 154 ---------------PNYNTMGLAKASLEASVRYLAVSL-GPKGIRANGISAGPIKTLAASGIKDFGKILDFVESNAPLR 217 (260)
T ss_pred ---------------CCcchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCccccchhccccchhhHHHHHHhcCccc
Confidence 777889999999999999999999 88999999999999999986543 22233444567887
Q ss_pred cc-CCCC
Q 022369 292 IF-NPQE 297 (298)
Q Consensus 292 ~~-~pe~ 297 (298)
++ +|||
T Consensus 218 r~~~ped 224 (260)
T PRK06997 218 RNVTIEE 224 (260)
T ss_pred ccCCHHH
Confidence 77 7765
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=278.56 Aligned_cols=215 Identities=23% Similarity=0.351 Sum_probs=183.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|++++++++.+++... +.++.++.+|+++++++++++++
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 76 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAE------GGEAVALAGDVRDEAYAKALVAL 76 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHH
Confidence 567899999999999999999999999999999999999988888777653 13688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.+++.+++.++|.|++++.|+||++||..++..
T Consensus 77 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~------- 149 (254)
T PRK07478 77 AVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTA------- 149 (254)
T ss_pred HHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhcc-------
Confidence 9999999999999999864 35677889999999999999999999999999999988899999999876421
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~~~~-~pe 296 (298)
+.+....|++||+++.+|+++++.|+ .++||+|++|+||+++|++.+... +.........|..++ +||
T Consensus 150 -------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (254)
T PRK07478 150 -------GFPGMAAYAASKAGLIGLTQVLAAEY-GAQGIRVNALLPGGTDTPMGRAMGDTPEALAFVAGLHALKRMAQPE 221 (254)
T ss_pred -------CCCCcchhHHHHHHHHHHHHHHHHHH-hhcCEEEEEEeeCcccCcccccccCCHHHHHHHHhcCCCCCCcCHH
Confidence 22667889999999999999999999 788999999999999999876542 211222234466555 665
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 222 ~ 222 (254)
T PRK07478 222 E 222 (254)
T ss_pred H
Confidence 4
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-39 Score=280.17 Aligned_cols=216 Identities=19% Similarity=0.273 Sum_probs=183.2
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++++|++|||||++|||+++|++|+++|++|++++| +.+++++..+++.... +.++.++++|++|++++++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~ 78 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKY-----GIKAKAYPLNILEPETYKELF 78 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhc-----CCceEEEEcCCCCHHHHHHHH
Confidence 5678999999999999999999999999999999865 6667777766665421 247899999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCC------CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccC
Q 022369 140 EAWNGRLGPLHVLINNAGIFS------IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~------~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~ 213 (298)
+++.+++|++|+||||||+.. ..++.+.+.+++++.+++|+.+++.+++.++|.|.+++.|+||++||..+..+
T Consensus 79 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 158 (260)
T PRK08416 79 KKIDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLVY 158 (260)
T ss_pred HHHHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccccC
Confidence 999999999999999998752 24567788999999999999999999999999999888899999999876554
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhh
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPY 290 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~ 290 (298)
. +.+..|++||+|+++|+++|+.|+ .++||+|++|+||+++|++.+..+ +..+......|.
T Consensus 159 ~---------------~~~~~Y~asK~a~~~~~~~la~el-~~~gi~v~~v~PG~i~T~~~~~~~~~~~~~~~~~~~~~~ 222 (260)
T PRK08416 159 I---------------ENYAGHGTSKAAVETMVKYAATEL-GEKNIRVNAVSGGPIDTDALKAFTNYEEVKAKTEELSPL 222 (260)
T ss_pred C---------------CCcccchhhHHHHHHHHHHHHHHh-hhhCeEEEEEeeCcccChhhhhccCCHHHHHHHHhcCCC
Confidence 4 677789999999999999999999 789999999999999999976543 223334446677
Q ss_pred ccc-CCCC
Q 022369 291 FIF-NPQE 297 (298)
Q Consensus 291 ~~~-~pe~ 297 (298)
.++ +|||
T Consensus 223 ~r~~~p~~ 230 (260)
T PRK08416 223 NRMGQPED 230 (260)
T ss_pred CCCCCHHH
Confidence 766 6664
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=281.54 Aligned_cols=192 Identities=25% Similarity=0.404 Sum_probs=172.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+ +++++..+++.+. +.++.++++|+++++++++++++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~ 75 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN------GGKAKAYHVDISDEQQVKDFASE 75 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc------CCeEEEEEeecCCHHHHHHHHHH
Confidence 4678999999999999999999999999999999999 7788777777542 23688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+.+|++|+||||||+.. ..++.+.+.+.|++.+++|+.+++.+++.++|+|++++ |+||++||..++.+.
T Consensus 76 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------ 148 (272)
T PRK08589 76 IKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSFSGQAAD------ 148 (272)
T ss_pred HHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCchhhcCCC------
Confidence 9999999999999999864 35677889999999999999999999999999998765 899999998766554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++.+..
T Consensus 149 ---------~~~~~Y~asKaal~~l~~~la~e~-~~~gI~v~~v~PG~v~T~~~~~~ 195 (272)
T PRK08589 149 ---------LYRSGYNAAKGAVINFTKSIAIEY-GRDGIRANAIAPGTIETPLVDKL 195 (272)
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccCchhhhh
Confidence 667789999999999999999999 78899999999999999997653
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=277.04 Aligned_cols=198 Identities=27% Similarity=0.351 Sum_probs=175.7
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
+.+..+-.|++++|||||+|||+++|++||++|.||++++|++++++++.+|+.+.++ .++.++.+|+++.+++.
T Consensus 41 ~~~~~~~~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~-----vev~~i~~Dft~~~~~y 115 (312)
T KOG1014|consen 41 PKDLKEKLGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYK-----VEVRIIAIDFTKGDEVY 115 (312)
T ss_pred ecchHHhcCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhC-----cEEEEEEEecCCCchhH
Confidence 4444445579999999999999999999999999999999999999999999999765 47999999999988754
Q ss_pred HHHHHHhcccCCccEEEEccCCCC--CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~ 214 (298)
+-+.+..+. .+|.+||||+|++. +..+.+.+.+.+++++++|.++++.+++.++|.|.++++|.|||++|.+|..+.
T Consensus 116 e~i~~~l~~-~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~ 194 (312)
T KOG1014|consen 116 EKLLEKLAG-LDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPT 194 (312)
T ss_pred HHHHHHhcC-CceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccccC
Confidence 444444333 37889999999987 455778888899999999999999999999999999999999999999866665
Q ss_pred CCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
|.++.|++||+++..|+++|+.|+ +.+||.|.++.|++|.|+|...
T Consensus 195 ---------------p~~s~ysasK~~v~~~S~~L~~Ey-~~~gI~Vq~v~p~~VaTkm~~~ 240 (312)
T KOG1014|consen 195 ---------------PLLSVYSASKAFVDFFSRCLQKEY-ESKGIFVQSVIPYLVATKMAKY 240 (312)
T ss_pred ---------------hhHHHHHHHHHHHHHHHHHHHHHH-HhcCeEEEEeehhheecccccc
Confidence 999999999999999999999999 8899999999999999999764
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=281.41 Aligned_cols=210 Identities=15% Similarity=0.114 Sum_probs=172.5
Q ss_pred CCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 63 VNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 63 ~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
+++|++|||||+ +|||+++|++|+++|++|++++|+. ...+..+++.+... ....+++|++|+++++++++
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~-~~~~~~~~l~~~~~------~~~~~~~Dl~~~~~v~~~~~ 80 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGD-ALKKRVEPLAAELG------AFVAGHCDVTDEASIDAVFE 80 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHHHhcC------CceEEecCCCCHHHHHHHHH
Confidence 568999999997 8999999999999999999998873 23333344433221 24568999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCC----CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 141 AWNGRLGPLHVLINNAGIFSI----GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
++.+++|++|+||||||+... .++.+.+.++|++.+++|+.+++.+++.++|+|.+ +|+||++||..+..+
T Consensus 81 ~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~--~g~Iv~iss~~~~~~--- 155 (272)
T PRK08159 81 TLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTD--GGSILTLTYYGAEKV--- 155 (272)
T ss_pred HHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCC--CceEEEEeccccccC---
Confidence 999999999999999998642 46778899999999999999999999999999964 489999999865433
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH--HHHH-HHhhhhccc
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI--VQAA-YHLIPYFIF 293 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~--~~~~-~~~~p~~~~ 293 (298)
.|.+..|++||+|+.+|+++|+.|+ .++||+||+|+||+++|++.+..++. ..+. ....|+.++
T Consensus 156 ------------~p~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~ 222 (272)
T PRK08159 156 ------------MPHYNVMGVAKAALEASVKYLAVDL-GPKNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPLRRT 222 (272)
T ss_pred ------------CCcchhhhhHHHHHHHHHHHHHHHh-cccCeEEEEeecCCcCCHHHhcCCcchHHHHHHHhCCccccc
Confidence 3778889999999999999999999 88999999999999999986544321 1111 225788777
Q ss_pred -CCCC
Q 022369 294 -NPQE 297 (298)
Q Consensus 294 -~pe~ 297 (298)
+|||
T Consensus 223 ~~pee 227 (272)
T PRK08159 223 VTIEE 227 (272)
T ss_pred CCHHH
Confidence 7775
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=286.48 Aligned_cols=196 Identities=21% Similarity=0.245 Sum_probs=167.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc----------hHHHHHHHHHHHhhcCCCCCccEEEEEcCCC
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL----------KAANELIQKWQEEWSGKGLPLNIEAMELDLL 130 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s 130 (298)
.+++||++|||||++|||+++|++|++.|++|++++|+. ++++++.+++... +.++.++++|++
T Consensus 4 ~~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~Dv~ 77 (305)
T PRK08303 4 KPLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAA------GGRGIAVQVDHL 77 (305)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhc------CCceEEEEcCCC
Confidence 457899999999999999999999999999999999984 4555665555432 236788999999
Q ss_pred CHHHHHHHHHHHhcccCCccEEEEcc-CCCC----CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEE
Q 022369 131 SLDSVVRFSEAWNGRLGPLHVLINNA-GIFS----IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINV 205 (298)
Q Consensus 131 ~~~~v~~~~~~~~~~~g~idilVnna-g~~~----~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~i 205 (298)
|+++++++++++.+.+|+||+||||| |+.. ..++.+.+.++|++.+++|+.+++.++++++|+|.++++|+|||+
T Consensus 78 ~~~~v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~i 157 (305)
T PRK08303 78 VPEQVRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEI 157 (305)
T ss_pred CHHHHHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEE
Confidence 99999999999999999999999999 8531 256778889999999999999999999999999988778999999
Q ss_pred cCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 206 NSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 206 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
||..+.... .+.+....|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|..
T Consensus 158 sS~~~~~~~------------~~~~~~~~Y~asKaal~~lt~~La~el-~~~gIrVn~v~PG~v~T~~~~ 214 (305)
T PRK08303 158 TDGTAEYNA------------THYRLSVFYDLAKTSVNRLAFSLAHEL-APHGATAVALTPGWLRSEMML 214 (305)
T ss_pred CCccccccC------------cCCCCcchhHHHHHHHHHHHHHHHHHh-hhcCcEEEEecCCccccHHHH
Confidence 997643221 112456679999999999999999999 889999999999999999853
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=276.49 Aligned_cols=218 Identities=21% Similarity=0.246 Sum_probs=186.2
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch-HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK-AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+.++++|++|||||++|||+++|++|+++|++|++++|+.+ .+++..+++... +.++.++++|++|+++++++
T Consensus 3 ~~~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~i~~~ 76 (254)
T PRK06114 3 LFDLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAA------GRRAIQIAADVTSKADLRAA 76 (254)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHH
Confidence 34678999999999999999999999999999999999864 456666666542 23678899999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++++.+.+|++|++|||||+....++.+.+.++|++.+++|+.+++.++++++|.|++++.|+||++||.++..+...
T Consensus 77 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~-- 154 (254)
T PRK06114 77 VARTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNRG-- 154 (254)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCC--
Confidence 999999999999999999998777788899999999999999999999999999999888899999999987665411
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC--chHHHHHHHHhhhhccc-CC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD--LPKIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~--~~~~~~~~~~~~p~~~~-~p 295 (298)
+....|+++|+|+.+|+++++.|+ .++||+||+|+||+++|+|.+. ..+..+......|++++ +|
T Consensus 155 -----------~~~~~Y~~sKaa~~~l~~~la~e~-~~~gi~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~p~~r~~~~ 222 (254)
T PRK06114 155 -----------LLQAHYNASKAGVIHLSKSLAMEW-VGRGIRVNSISPGYTATPMNTRPEMVHQTKLFEEQTPMQRMAKV 222 (254)
T ss_pred -----------CCcchHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEeecCccCcccccccchHHHHHHHhcCCCCCCcCH
Confidence 235679999999999999999999 8899999999999999999753 22333444557788877 77
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 223 ~d 224 (254)
T PRK06114 223 DE 224 (254)
T ss_pred HH
Confidence 65
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=281.15 Aligned_cols=228 Identities=39% Similarity=0.577 Sum_probs=188.3
Q ss_pred CCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 58 LPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 58 ~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
....++.|++++||||++|||+++|++||++|++|++.+||.++.++.++++++..+. .++.++++|+++.++|++
T Consensus 28 ~~~~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~----~~i~~~~lDLssl~SV~~ 103 (314)
T KOG1208|consen 28 THGIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKAN----QKIRVIQLDLSSLKSVRK 103 (314)
T ss_pred eccccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCC----CceEEEECCCCCHHHHHH
Confidence 3455788999999999999999999999999999999999999999999999884332 489999999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
+++++++.++++|+||||||+.... ...+.|++|..|.+|++|+|.+++.++|.|+++.++||||+||..+ ......
T Consensus 104 fa~~~~~~~~~ldvLInNAGV~~~~--~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~-~~~~~~ 180 (314)
T KOG1208|consen 104 FAEEFKKKEGPLDVLINNAGVMAPP--FSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG-GGKIDL 180 (314)
T ss_pred HHHHHHhcCCCccEEEeCcccccCC--cccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc-cCccch
Confidence 9999999999999999999997643 3778899999999999999999999999999988899999999987 222222
Q ss_pred ccccccccccC--CCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC-ccCCchHHHHHHHHhhhhccc-
Q 022369 218 EDMNVVSGRRK--YTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN-VARDLPKIVQAAYHLIPYFIF- 293 (298)
Q Consensus 218 ~~~~~~~~~~~--~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~-~~~~~~~~~~~~~~~~p~~~~- 293 (298)
.+ ..+... +....+|+.||.++..+++.|++.+ .+ ||.+++++||.|.|+ +.+ .......+...+....+
T Consensus 181 ~~---l~~~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l-~~-~V~~~~~hPG~v~t~~l~r-~~~~~~~l~~~l~~~~~k 254 (314)
T KOG1208|consen 181 KD---LSGEKAKLYSSDAAYALSKLANVLLANELAKRL-KK-GVTTYSVHPGVVKTTGLSR-VNLLLRLLAKKLSWPLTK 254 (314)
T ss_pred hh---ccchhccCccchhHHHHhHHHHHHHHHHHHHHh-hc-CceEEEECCCcccccceec-chHHHHHHHHHHHHHhcc
Confidence 22 223332 5555679999999999999999999 55 999999999999999 555 54444444443333222
Q ss_pred CCCCC
Q 022369 294 NPQEG 298 (298)
Q Consensus 294 ~pe~g 298 (298)
+|++|
T Consensus 255 s~~~g 259 (314)
T KOG1208|consen 255 SPEQG 259 (314)
T ss_pred CHHHH
Confidence 55543
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=277.89 Aligned_cols=208 Identities=18% Similarity=0.220 Sum_probs=170.6
Q ss_pred CCCCCEEEEeCC--CCchHHHHHHHHHHcCCEEEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 62 PVNDLTCIVTGS--TSGIGREIARQLAESGAHVVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 62 ~~~~k~vlITGa--s~GIG~~~a~~la~~G~~Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
++++|++||||| ++|||+++|++|+++|++|++++|+. +.++++.+++ + .++.++++|++|++++++
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~----~-----~~~~~~~~Dv~~~~~i~~ 74 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL----P-----EPAPVLELDVTNEEHLAS 74 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc----C-----CCCcEEeCCCCCHHHHHH
Confidence 467899999999 89999999999999999999999864 3344443332 1 156789999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCCC----CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSI----GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~ 213 (298)
+++++.+.+|++|+||||||+... .++.+.+.++|++.+++|+.+++.+++.++|+|++ +|+||++++.. ..
T Consensus 75 ~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~--~g~Iv~is~~~-~~- 150 (256)
T PRK07889 75 LADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNE--GGSIVGLDFDA-TV- 150 (256)
T ss_pred HHHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhccc--CceEEEEeecc-cc-
Confidence 999999999999999999998643 35677889999999999999999999999999974 48999998742 11
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhh
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPY 290 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~ 290 (298)
+.+.+..|++||+|+.+|+++|+.|+ .++||+||+|+||+++|++.+..+ +..+.+....|+
T Consensus 151 --------------~~~~~~~Y~asKaal~~l~~~la~el-~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~ 215 (256)
T PRK07889 151 --------------AWPAYDWMGVAKAALESTNRYLARDL-GPRGIRVNLVAAGPIRTLAAKAIPGFELLEEGWDERAPL 215 (256)
T ss_pred --------------cCCccchhHHHHHHHHHHHHHHHHHh-hhcCeEEEeeccCcccChhhhcccCcHHHHHHHHhcCcc
Confidence 22667789999999999999999999 889999999999999999976543 222333446677
Q ss_pred c-cc-CCCC
Q 022369 291 F-IF-NPQE 297 (298)
Q Consensus 291 ~-~~-~pe~ 297 (298)
. ++ +|||
T Consensus 216 ~~~~~~p~e 224 (256)
T PRK07889 216 GWDVKDPTP 224 (256)
T ss_pred ccccCCHHH
Confidence 6 34 7765
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=282.77 Aligned_cols=193 Identities=26% Similarity=0.328 Sum_probs=163.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCC--HHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLS--LDSVVRFSE 140 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~--~~~v~~~~~ 140 (298)
..|++++||||++|||+++|++|+++|++|++++|++++++++.+++++.++. .++..+.+|+++ .+.++++.+
T Consensus 51 ~~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~----~~~~~~~~Dl~~~~~~~~~~l~~ 126 (320)
T PLN02780 51 KYGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSK----TQIKTVVVDFSGDIDEGVKRIKE 126 (320)
T ss_pred ccCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCC----cEEEEEEEECCCCcHHHHHHHHH
Confidence 46899999999999999999999999999999999999999998888764321 368888999985 344444444
Q ss_pred HHhcccCCccEEEEccCCCCC--CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 141 AWNGRLGPLHVLINNAGIFSI--GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
.+.. .++|+||||||+... .++.+.+.+++++.+++|+.|++.++++++|.|.+++.|+|||+||.++....
T Consensus 127 ~~~~--~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~---- 200 (320)
T PLN02780 127 TIEG--LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIP---- 200 (320)
T ss_pred HhcC--CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCC----
Confidence 4321 257799999998753 45778899999999999999999999999999999889999999998765311
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+.|....|++||+|+.+|+++|+.|+ .++||+|++|+||+|+|+|..
T Consensus 201 ---------~~p~~~~Y~aSKaal~~~~~~L~~El-~~~gI~V~~v~PG~v~T~~~~ 247 (320)
T PLN02780 201 ---------SDPLYAVYAATKAYIDQFSRCLYVEY-KKSGIDVQCQVPLYVATKMAS 247 (320)
T ss_pred ---------CCccchHHHHHHHHHHHHHHHHHHHH-hccCeEEEEEeeCceecCccc
Confidence 12667889999999999999999999 888999999999999999976
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=283.93 Aligned_cols=194 Identities=24% Similarity=0.321 Sum_probs=177.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|++++++++.+++.+. +.++.++.+|++|+++++++++
T Consensus 3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~------g~~~~~~~~Dv~d~~~v~~~~~ 76 (330)
T PRK06139 3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRAL------GAEVLVVPTDVTDADQVKALAT 76 (330)
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeeCCCHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999888887652 2468889999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.+|++|++|||||+...+++.+.+.+++++.+++|+.|+++++++++|+|++++.|+|||+||..++.+.
T Consensus 77 ~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~------ 150 (330)
T PRK06139 77 QAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQ------ 150 (330)
T ss_pred HHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCC------
Confidence 99999999999999999988888899999999999999999999999999999999888999999998866654
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCC-CCcEEEEeeCCccccCccCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAE-SGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~-~gI~v~~v~Pg~v~T~~~~~ 276 (298)
|....|++||+++.+|+++|+.|+ .+ .||+|++|+||+++|++.+.
T Consensus 151 ---------p~~~~Y~asKaal~~~~~sL~~El-~~~~gI~V~~v~Pg~v~T~~~~~ 197 (330)
T PRK06139 151 ---------PYAAAYSASKFGLRGFSEALRGEL-ADHPDIHVCDVYPAFMDTPGFRH 197 (330)
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHHh-CCCCCeEEEEEecCCccCccccc
Confidence 778889999999999999999999 55 49999999999999998753
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=280.76 Aligned_cols=211 Identities=30% Similarity=0.474 Sum_probs=180.8
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
+...++++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+..+. .++.++++|++|.++++
T Consensus 6 ~~~~~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~----~~v~~~~~Dl~d~~sv~ 81 (313)
T PRK05854 6 DITVPDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPD----AKLSLRALDLSSLASVA 81 (313)
T ss_pred cccCcccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCC----CceEEEEecCCCHHHHH
Confidence 44567889999999999999999999999999999999999999999988888764322 36889999999999999
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
++++++.+.++++|+||||||+... +..+.+.++++..+++|+.|++.+++.++|.|+++ .|+||++||.++..+...
T Consensus 82 ~~~~~~~~~~~~iD~li~nAG~~~~-~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~-~~riv~vsS~~~~~~~~~ 159 (313)
T PRK05854 82 ALGEQLRAEGRPIHLLINNAGVMTP-PERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG-RARVTSQSSIAARRGAIN 159 (313)
T ss_pred HHHHHHHHhCCCccEEEECCccccC-CccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC-CCCeEEEechhhcCCCcC
Confidence 9999999999999999999998653 34467889999999999999999999999999865 589999999988766544
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcC-CCCCcEEEEeeCCccccCccCC
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLP-AESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~-~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
.+++ ....++++...|+.||+|+..|++.|+.++. .+.||+||+++||+|+|++.+.
T Consensus 160 ~~~~---~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~~~~~ 217 (313)
T PRK05854 160 WDDL---NWERSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTNLLAA 217 (313)
T ss_pred cccc---cccccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccCcccc
Confidence 3332 2334567778899999999999999998652 4678999999999999999754
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=280.22 Aligned_cols=192 Identities=24% Similarity=0.268 Sum_probs=171.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc---------hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL---------KAANELIQKWQEEWSGKGLPLNIEAMELDLLSL 132 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 132 (298)
.+++|++|||||++|||+++|++|+++|++|++++|+. ++++++.+++.+. +.++.++.+|++|+
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~Dv~~~ 76 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA------GGEAVANGDDIADW 76 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc------CCceEEEeCCCCCH
Confidence 46789999999999999999999999999999999876 6777777776542 23688899999999
Q ss_pred HHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC------CCeEEEEc
Q 022369 133 DSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS------PSRIINVN 206 (298)
Q Consensus 133 ~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~------~g~Iv~is 206 (298)
++++++++++.+.+|++|+||||||+....++.+.+.++|++.+++|+.++++++++++|+|+++. .|+|||+|
T Consensus 77 ~~v~~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~is 156 (286)
T PRK07791 77 DGAANLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTS 156 (286)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeC
Confidence 999999999999999999999999998777788999999999999999999999999999997642 37999999
Q ss_pred CCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 207 SVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 207 S~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
|.++..+. +....|++||+|+.+|+++|+.|+ .++||+||+|+|| +.|+|...
T Consensus 157 S~~~~~~~---------------~~~~~Y~asKaal~~l~~~la~el-~~~gIrVn~v~Pg-~~T~~~~~ 209 (286)
T PRK07791 157 SGAGLQGS---------------VGQGNYSAAKAGIAALTLVAAAEL-GRYGVTVNAIAPA-ARTRMTET 209 (286)
T ss_pred chhhCcCC---------------CCchhhHHHHHHHHHHHHHHHHHH-HHhCeEEEEECCC-CCCCcchh
Confidence 99876655 778889999999999999999999 7889999999999 89998653
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=275.12 Aligned_cols=194 Identities=20% Similarity=0.319 Sum_probs=176.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++... +.++.++++|++|+++++++++
T Consensus 2 ~~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~ 75 (275)
T PRK05876 2 DGFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAE------GFDVHGVMCDVRHREEVTHLAD 75 (275)
T ss_pred CCcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEeCCCCCHHHHHHHHH
Confidence 3577999999999999999999999999999999999999888887777542 2368889999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+.+|++|+||||||+...+++.+.+.++|++.+++|+.|+++++++++|.|.+++ +|+||++||.+++.+.
T Consensus 76 ~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~----- 150 (275)
T PRK05876 76 EAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPN----- 150 (275)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCC-----
Confidence 9999999999999999998778888999999999999999999999999999998765 6899999999876654
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
++...|++||+++.+|+++|+.|+ .++||+|++|+||+++|++..+
T Consensus 151 ----------~~~~~Y~asK~a~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~ 196 (275)
T PRK05876 151 ----------AGLGAYGVAKYGVVGLAETLAREV-TADGIGVSVLCPMVVETNLVAN 196 (275)
T ss_pred ----------CCCchHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEeCccccccccc
Confidence 777889999999999999999999 7789999999999999998654
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=271.83 Aligned_cols=214 Identities=23% Similarity=0.350 Sum_probs=181.6
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..+++||++|||||++|||+++|++|+++|++|++++++.. ++..+++.+. +.++.++++|++|++++++++
T Consensus 5 ~~~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~ 76 (253)
T PRK08993 5 AFSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTAL------GRRFLSLTADLRKIDGIPALL 76 (253)
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhc------CCeEEEEECCCCCHHHHHHHH
Confidence 44688999999999999999999999999999999887642 3444444331 236889999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+.+|++|++|||||+....++.+.+.++|++.+++|+.+++.++++++|.|++++ +|+||++||..++.+.
T Consensus 77 ~~~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 152 (253)
T PRK08993 77 ERAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGG---- 152 (253)
T ss_pred HHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhccCC----
Confidence 99999999999999999987777788899999999999999999999999999998764 5899999999866554
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhhccc-C
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~~~~-~ 294 (298)
+....|+++|+|+.+++++++.|+ .++||+||+|+||+++|++..... ...+...+.+|..++ +
T Consensus 153 -----------~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~pG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~ 220 (253)
T PRK08993 153 -----------IRVPSYTASKSGVMGVTRLMANEW-AKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGL 220 (253)
T ss_pred -----------CCCcchHHHHHHHHHHHHHHHHHh-hhhCeEEEEEeeCcccCcchhhhccchHHHHHHHhcCCCCCCcC
Confidence 566789999999999999999999 888999999999999999976542 122344557787777 7
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 221 p~e 223 (253)
T PRK08993 221 PSD 223 (253)
T ss_pred HHH
Confidence 765
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=271.05 Aligned_cols=215 Identities=26% Similarity=0.344 Sum_probs=187.2
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++... +.++..+.+|++|+++++++++
T Consensus 5 ~~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~~~~~ 78 (254)
T PRK08085 5 FSLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQE------GIKAHAAPFNVTHKQEVEAAIE 78 (254)
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEecCCCCHHHHHHHHH
Confidence 4578999999999999999999999999999999999999888887777542 2367889999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.++++|++|||||.....++.+.+.++|++.+++|+.+++.+++.+++.|.+++.|+||++||..+..+.
T Consensus 79 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------ 152 (254)
T PRK08085 79 HIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGR------ 152 (254)
T ss_pred HHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccCC------
Confidence 99999999999999999877777888999999999999999999999999999988888999999998755443
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~pe 296 (298)
+....|+++|+++.+++++++.|+ .++||+||+|+||+++|++.+.. ++..+......|+.++ +||
T Consensus 153 ---------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~pG~~~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 222 (254)
T PRK08085 153 ---------DTITPYAASKGAVKMLTRGMCVEL-ARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQ 222 (254)
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHH-HhhCeEEEEEEeCCCCCcchhhhccCHHHHHHHHhcCCCCCCcCHH
Confidence 667789999999999999999999 88899999999999999997653 2222333446787777 666
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 223 ~ 223 (254)
T PRK08085 223 E 223 (254)
T ss_pred H
Confidence 4
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=278.27 Aligned_cols=195 Identities=24% Similarity=0.351 Sum_probs=176.8
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+..+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.. +.++..+++|++|+++++++
T Consensus 3 ~~~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-------~~~~~~~~~Dv~d~~~v~~~ 75 (296)
T PRK05872 3 PMTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG-------DDRVLTVVADVTDLAAMQAA 75 (296)
T ss_pred CCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-------CCcEEEEEecCCCHHHHHHH
Confidence 34568899999999999999999999999999999999999988887766532 13677888999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++++.+.+|++|++|||||+....++.+.+.++|++.+++|+.|++++++.++|.|.++ .|+||++||..++.+.
T Consensus 76 ~~~~~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~~---- 150 (296)
T PRK05872 76 AEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIER-RGYVLQVSSLAAFAAA---- 150 (296)
T ss_pred HHHHHHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCEEEEEeCHhhcCCC----
Confidence 99999999999999999999887888899999999999999999999999999999875 4899999999876655
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|++||+++++|+++|+.|+ .++||+|++++||+++|+|.+..
T Consensus 151 -----------~~~~~Y~asKaal~~~~~~l~~e~-~~~gi~v~~v~Pg~v~T~~~~~~ 197 (296)
T PRK05872 151 -----------PGMAAYCASKAGVEAFANALRLEV-AHHGVTVGSAYLSWIDTDLVRDA 197 (296)
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHHH-HHHCcEEEEEecCcccchhhhhc
Confidence 777889999999999999999999 78899999999999999998754
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=272.32 Aligned_cols=210 Identities=22% Similarity=0.257 Sum_probs=177.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++++|++|+++++++++
T Consensus 2 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dl~~~~~~~~~~~ 72 (261)
T PRK08265 2 IGLAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLG---------ERARFIATDITDDAAIERAVA 72 (261)
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CeeEEEEecCCCHHHHHHHHH
Confidence 35678999999999999999999999999999999999887777665541 368899999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.+|++|+||||||+..... .+.+.++|++.+++|+.+++.+++.++|.|+ ++.|+||++||.++..+.
T Consensus 73 ~~~~~~g~id~lv~~ag~~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~g~ii~isS~~~~~~~------ 144 (261)
T PRK08265 73 TVVARFGRVDILVNLACTYLDDG-LASSRADWLAALDVNLVSAAMLAQAAHPHLA-RGGGAIVNFTSISAKFAQ------ 144 (261)
T ss_pred HHHHHhCCCCEEEECCCCCCCCc-CcCCHHHHHHHHhHhhHHHHHHHHHHHHHHh-cCCcEEEEECchhhccCC------
Confidence 99999999999999999865433 3568899999999999999999999999998 567999999999876654
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch----HHHHHHH-Hhhhhccc-C
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP----KIVQAAY-HLIPYFIF-N 294 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~----~~~~~~~-~~~p~~~~-~ 294 (298)
+....|+++|+++.+++++++.|+ .++||+||+|+||+++|++.+... +..+... ...|++++ +
T Consensus 145 ---------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~~~t~~~~~~~~~~~~~~~~~~~~~~p~~r~~~ 214 (261)
T PRK08265 145 ---------TGRWLYPASKAAIRQLTRSMAMDL-APDGIRVNSVSPGWTWSRVMDELSGGDRAKADRVAAPFHLLGRVGD 214 (261)
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHh-cccCEEEEEEccCCccChhhhhhcccchhHHHHhhcccCCCCCccC
Confidence 667789999999999999999999 788999999999999999875432 1111221 24577666 6
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 215 p~d 217 (261)
T PRK08265 215 PEE 217 (261)
T ss_pred HHH
Confidence 654
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=271.70 Aligned_cols=182 Identities=25% Similarity=0.367 Sum_probs=165.6
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+.++. .++.++++|++|+++++++++
T Consensus 2 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~-----------------~~~~~~~~D~~~~~~i~~~~~ 64 (258)
T PRK06398 2 LGLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY-----------------NDVDYFKVDVSNKEQVIKGID 64 (258)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc-----------------CceEEEEccCCCHHHHHHHHH
Confidence 467899999999999999999999999999999999985431 157789999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.+|++|+||||||+....++.+.+.++|++.+++|+.|++.++++++|+|++++.|+||++||..+..+.
T Consensus 65 ~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 138 (258)
T PRK06398 65 YVISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVT------ 138 (258)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccCC------
Confidence 99999999999999999977778889999999999999999999999999999998888999999998765544
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|++||+|+.+|+++++.|+ .+. |+||+|+||+++|++.+.
T Consensus 139 ---------~~~~~Y~~sKaal~~~~~~la~e~-~~~-i~vn~i~PG~v~T~~~~~ 183 (258)
T PRK06398 139 ---------RNAAAYVTSKHAVLGLTRSIAVDY-APT-IRCVAVCPGSIRTPLLEW 183 (258)
T ss_pred ---------CCCchhhhhHHHHHHHHHHHHHHh-CCC-CEEEEEecCCccchHHhh
Confidence 777889999999999999999999 655 999999999999998653
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=264.07 Aligned_cols=187 Identities=19% Similarity=0.188 Sum_probs=167.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++..+.+|+++++++++++++
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~------~~~~~~~~~D~~~~~~~~~~~~~ 75 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSAL------TDNVYSFQLKDFSQESIRHLFDA 75 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCCeEEEEccCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999888887653 23678899999999999999999
Q ss_pred HhcccC-CccEEEEccCCC-CCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcc
Q 022369 142 WNGRLG-PLHVLINNAGIF-SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 142 ~~~~~g-~idilVnnag~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~ 218 (298)
+.+++| +||++|||||.. ...++.+.+.++|++.+++|+.+++.+++.++|+|.+++ +|+|||+||..+.
T Consensus 76 ~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~------- 148 (227)
T PRK08862 76 IEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHDDH------- 148 (227)
T ss_pred HHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCCCC-------
Confidence 999999 999999999854 345678889999999999999999999999999998754 7999999996532
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+++|+.
T Consensus 149 -----------~~~~~Y~asKaal~~~~~~la~el-~~~~Irvn~v~PG~i~t~~ 191 (227)
T PRK08862 149 -----------QDLTGVESSNALVSGFTHSWAKEL-TPFNIRVGGVVPSIFSANG 191 (227)
T ss_pred -----------CCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCcCcCCC
Confidence 445679999999999999999999 8889999999999999994
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-37 Score=269.04 Aligned_cols=215 Identities=20% Similarity=0.334 Sum_probs=183.8
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..++++|++|||||++|||+++|++|+++|++|++++|+ ++.+++.+.+.+. +.++.++++|+++++++++++
T Consensus 10 ~~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~i~~~~ 82 (258)
T PRK06935 10 FFSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKE------GRKVTFVQVDLTKPESAEKVV 82 (258)
T ss_pred cccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHH
Confidence 345789999999999999999999999999999999998 5666665555432 136889999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+.+|++|++|||||.....++.+.+.++|++.+++|+.+++.++++++|.|++++.|+||++||..++.+.
T Consensus 83 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 157 (258)
T PRK06935 83 KEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGG----- 157 (258)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCC-----
Confidence 999999999999999999877777888899999999999999999999999999999888999999998866554
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhhccc-CC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~~~~-~p 295 (298)
+....|+++|+++.+++++++.|+ .++||+||+|+||+++|++.+... ...+.....+|..++ +|
T Consensus 158 ----------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (258)
T PRK06935 158 ----------KFVPAYTASKHGVAGLTKAFANEL-AAYNIQVNAIAPGYIKTANTAPIRADKNRNDEILKRIPAGRWGEP 226 (258)
T ss_pred ----------CCchhhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEeccccccchhhcccChHHHHHHHhcCCCCCCCCH
Confidence 667789999999999999999999 888999999999999999865432 222334446676666 55
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 227 ~d 228 (258)
T PRK06935 227 DD 228 (258)
T ss_pred HH
Confidence 54
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=269.34 Aligned_cols=208 Identities=21% Similarity=0.243 Sum_probs=178.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
++|||||++|||+++|++|+++|++|++++|+++++++..+++++. .++.++++|++|+++++++++++.+++
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~Dv~d~~~~~~~~~~~~~~~ 74 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY-------GEVYAVKADLSDKDDLKNLVKEAWELL 74 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-------CCceEEEcCCCCHHHHHHHHHHHHHhc
Confidence 6999999999999999999999999999999999988888877542 257889999999999999999999999
Q ss_pred CCccEEEEccCCCC--CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhc-CCCCeEEEEcCCccccCCCCccccccc
Q 022369 147 GPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR-GSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 147 g~idilVnnag~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~-~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
|++|+||||||... ..++.+.+.++|.+.+++|+.+++.+++.++|.|.+ +++|+||++||.++..+.
T Consensus 75 g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~--------- 145 (259)
T PRK08340 75 GGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPM--------- 145 (259)
T ss_pred CCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCC---------
Confidence 99999999999753 345678888999999999999999999999999874 567999999998765443
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------------hH-HHHHHHHhhhh
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------------PK-IVQAAYHLIPY 290 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------------~~-~~~~~~~~~p~ 290 (298)
+....|+++|+|+.+|+++|+.|+ .++||+||+|+||+++|++.+.. ++ ..+......|+
T Consensus 146 ------~~~~~y~~sKaa~~~~~~~la~e~-~~~gI~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 218 (259)
T PRK08340 146 ------PPLVLADVTRAGLVQLAKGVSRTY-GGKGIRAYTVLLGSFDTPGARENLARIAEERGVSFEETWEREVLERTPL 218 (259)
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHh-CCCCEEEEEeccCcccCccHHHHHHhhhhccCCchHHHHHHHHhccCCc
Confidence 677889999999999999999999 88999999999999999987431 11 11234456788
Q ss_pred ccc-CCCC
Q 022369 291 FIF-NPQE 297 (298)
Q Consensus 291 ~~~-~pe~ 297 (298)
+++ +|||
T Consensus 219 ~r~~~p~d 226 (259)
T PRK08340 219 KRTGRWEE 226 (259)
T ss_pred cCCCCHHH
Confidence 777 7765
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=267.27 Aligned_cols=217 Identities=21% Similarity=0.232 Sum_probs=187.3
Q ss_pred CCCCCCEEEEeCCCC-chHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTS-GIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~-GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..+++|++|||||++ |||+++|+.|+++|++|++++|+.+++++..+++++..+. .++..+++|+++++++++++
T Consensus 13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~ 88 (262)
T PRK07831 13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGL----GRVEAVVCDVTSEAQVDALI 88 (262)
T ss_pred cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCC----ceEEEEEccCCCHHHHHHHH
Confidence 346789999999984 9999999999999999999999999888888777653321 26888999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+.+|++|+||||||.....++.+.+.++|++.+++|+.+++.+++.++|.|++++ .|+||+++|..+..+.
T Consensus 89 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~---- 164 (262)
T PRK07831 89 DAAVERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQ---- 164 (262)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCC----
Confidence 99999999999999999987777888899999999999999999999999999998876 7999999998765543
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc--hHHHHHHHHhhhhccc-CC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~--~~~~~~~~~~~p~~~~-~p 295 (298)
+....|+++|+|+++|+++++.|+ .++||+|++|+||+++|++.+.. ++..+.+....|+.++ +|
T Consensus 165 -----------~~~~~Y~~sKaal~~~~~~la~e~-~~~gI~v~~i~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~r~~~p 232 (262)
T PRK07831 165 -----------HGQAHYAAAKAGVMALTRCSALEA-AEYGVRINAVAPSIAMHPFLAKVTSAELLDELAAREAFGRAAEP 232 (262)
T ss_pred -----------CCCcchHHHHHHHHHHHHHHHHHh-CccCeEEEEEeeCCccCcccccccCHHHHHHHHhcCCCCCCcCH
Confidence 677789999999999999999999 88899999999999999987643 3334445556677766 66
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 233 ~~ 234 (262)
T PRK07831 233 WE 234 (262)
T ss_pred HH
Confidence 54
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-37 Score=266.36 Aligned_cols=215 Identities=26% Similarity=0.304 Sum_probs=185.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|+++||||++|||.+++++|+++|++|++++|+.++++.+.+++.+. +.++.++++|+++.++++++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~ 77 (252)
T PRK07035 4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAA------GGKAEALACHIGEMEQIDALFA 77 (252)
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCHHHHHHHHH
Confidence 4678999999999999999999999999999999999999888888777542 2367889999999999999999
Q ss_pred HHhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+.++++|++|||||... ..++.+.+.+++++.+++|+.+++.++++++|+|++++.|+||++||..+..+.
T Consensus 78 ~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----- 152 (252)
T PRK07035 78 HIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSPG----- 152 (252)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCCC-----
Confidence 99999999999999999753 356678899999999999999999999999999998888999999998765543
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-CC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~p 295 (298)
++...|++||+++++|+++++.|+ .++||+|++|+||+|+|++.+.. ++..+......|..++ +|
T Consensus 153 ----------~~~~~Y~~sK~al~~~~~~l~~e~-~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (252)
T PRK07035 153 ----------DFQGIYSITKAAVISMTKAFAKEC-APFGIRVNALLPGLTDTKFASALFKNDAILKQALAHIPLRRHAEP 221 (252)
T ss_pred ----------CCCcchHHHHHHHHHHHHHHHHHH-hhcCEEEEEEeeccccCcccccccCCHHHHHHHHccCCCCCcCCH
Confidence 677889999999999999999999 88899999999999999997653 2333444445676666 66
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 222 ~~ 223 (252)
T PRK07035 222 SE 223 (252)
T ss_pred HH
Confidence 64
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=266.84 Aligned_cols=189 Identities=21% Similarity=0.276 Sum_probs=168.5
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
++++||||++|||+++|++|+ +|++|++++|+.++++++.+++++... ..+.++++|++|+++++++++++.+.
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~ 74 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGA-----TSVHVLSFDAQDLDTHRELVKQTQEL 74 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccC-----CceEEEEcccCCHHHHHHHHHHHHHh
Confidence 579999999999999999999 599999999999999998888865321 25788999999999999999999999
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
+|++|++|||||+....+..+.+.+++++.+++|+.+++.+++.++|.|.+++ +|+|||+||.++..+.
T Consensus 75 ~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~---------- 144 (246)
T PRK05599 75 AGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRAR---------- 144 (246)
T ss_pred cCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCC----------
Confidence 99999999999987655566677788899999999999999999999998764 6999999999876554
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++..+
T Consensus 145 -----~~~~~Y~asKaa~~~~~~~la~el-~~~~I~v~~v~PG~v~T~~~~~ 190 (246)
T PRK05599 145 -----RANYVYGSTKAGLDAFCQGLADSL-HGSHVRLIIARPGFVIGSMTTG 190 (246)
T ss_pred -----cCCcchhhHHHHHHHHHHHHHHHh-cCCCceEEEecCCcccchhhcC
Confidence 677889999999999999999999 7889999999999999998654
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=266.70 Aligned_cols=213 Identities=26% Similarity=0.368 Sum_probs=177.9
Q ss_pred CCCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcC-----------chHHHHHHHHHHHhhcCCCCCccEEEEEc
Q 022369 61 PPVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRN-----------LKAANELIQKWQEEWSGKGLPLNIEAMEL 127 (298)
Q Consensus 61 ~~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (298)
.+++||++|||||+ +|||+++|++|+++|++|++++|+ .++.++..+++++. +.++.++++
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~ 75 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKN------GVKVSSMEL 75 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhc------CCeEEEEEc
Confidence 35789999999999 599999999999999999998643 22333444444331 347889999
Q ss_pred CCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcC
Q 022369 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNS 207 (298)
Q Consensus 128 D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS 207 (298)
|++|+++++++++++.+++|++|++|||||.....++.+.+.++|++.+++|+.+++.+++.++|.|.+++.|+||++||
T Consensus 76 D~~~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS 155 (256)
T PRK12859 76 DLTQNDAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTS 155 (256)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence 99999999999999999999999999999987777888999999999999999999999999999999888899999999
Q ss_pred CccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHHh
Q 022369 208 VMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHL 287 (298)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~~ 287 (298)
..+..+. +++..|+++|+++.+|+++++.|+ .++||+|++|+||+++|++... +..+.+...
T Consensus 156 ~~~~~~~---------------~~~~~Y~~sK~a~~~l~~~la~~~-~~~~i~v~~v~PG~i~t~~~~~--~~~~~~~~~ 217 (256)
T PRK12859 156 GQFQGPM---------------VGELAYAATKGAIDALTSSLAAEV-AHLGITVNAINPGPTDTGWMTE--EIKQGLLPM 217 (256)
T ss_pred cccCCCC---------------CCchHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEEccccCCCCCH--HHHHHHHhc
Confidence 8755443 778899999999999999999999 7889999999999999997542 122233445
Q ss_pred hhhccc-CCCC
Q 022369 288 IPYFIF-NPQE 297 (298)
Q Consensus 288 ~p~~~~-~pe~ 297 (298)
.|+.++ +|+|
T Consensus 218 ~~~~~~~~~~d 228 (256)
T PRK12859 218 FPFGRIGEPKD 228 (256)
T ss_pred CCCCCCcCHHH
Confidence 566655 5554
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=269.45 Aligned_cols=214 Identities=24% Similarity=0.361 Sum_probs=184.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++... +.++.++++|+++++++.+++++
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~v~~~~~~ 80 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA------GGEALAVKADVLDKESLEQARQQ 80 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHH
Confidence 577899999999999999999999999999999999988888887777542 23688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCC---------------CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEc
Q 022369 142 WNGRLGPLHVLINNAGIFSI---------------GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVN 206 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~---------------~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~is 206 (298)
+.+++|++|++|||||+... .++.+.+.++|++.+++|+.+++.+++.++|.|.+++.|+||++|
T Consensus 81 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~is 160 (278)
T PRK08277 81 ILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINIS 160 (278)
T ss_pred HHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEc
Confidence 99999999999999996532 245678899999999999999999999999999988889999999
Q ss_pred CCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc--------h
Q 022369 207 SVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--------P 278 (298)
Q Consensus 207 S~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~--------~ 278 (298)
|..++.+. +....|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++.+.. .
T Consensus 161 S~~~~~~~---------------~~~~~Y~~sK~a~~~l~~~la~e~-~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~ 224 (278)
T PRK08277 161 SMNAFTPL---------------TKVPAYSAAKAAISNFTQWLAVHF-AKVGIRVNAIAPGFFLTEQNRALLFNEDGSLT 224 (278)
T ss_pred cchhcCCC---------------CCCchhHHHHHHHHHHHHHHHHHh-CccCeEEEEEEeccCcCcchhhhhccccccch
Confidence 99876554 677889999999999999999999 78899999999999999986542 1
Q ss_pred HHHHHHHHhhhhccc-CCCC
Q 022369 279 KIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 279 ~~~~~~~~~~p~~~~-~pe~ 297 (298)
+..+......|+.++ +|||
T Consensus 225 ~~~~~~~~~~p~~r~~~~~d 244 (278)
T PRK08277 225 ERANKILAHTPMGRFGKPEE 244 (278)
T ss_pred hHHHHHhccCCccCCCCHHH
Confidence 122334446788777 7765
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=265.59 Aligned_cols=217 Identities=24% Similarity=0.319 Sum_probs=187.4
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||+++||||++|||+++|++|+++|++|++++|+.+++++..+++....+ +.++.++.+|++++++++++++
T Consensus 5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~~~~~~~~~~~ 80 (257)
T PRK09242 5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFP----EREVHGLAADVSDDEDRRAILD 80 (257)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC----CCeEEEEECCCCCHHHHHHHHH
Confidence 457899999999999999999999999999999999999998888877765422 2478999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.+|++|++|||||.....+..+.+.++|++.+++|+.+++.++++++|+|++++.|+||++||..+..+.
T Consensus 81 ~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~------ 154 (257)
T PRK09242 81 WVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHV------ 154 (257)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCC------
Confidence 99999999999999999876667788899999999999999999999999999998888999999998766554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~pe 296 (298)
+....|+++|+++..++++++.|+ .++||+|++|+||+++|++.+.. ++..+......|..++ +||
T Consensus 155 ---------~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~i~Pg~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (257)
T PRK09242 155 ---------RSGAPYGMTKAALLQMTRNLAVEW-AEDGIRVNAVAPWYIRTPLTSGPLSDPDYYEQVIERTPMRRVGEPE 224 (257)
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHH-HHhCeEEEEEEECCCCCcccccccCChHHHHHHHhcCCCCCCcCHH
Confidence 667789999999999999999999 78899999999999999997643 2233333445566555 554
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 225 ~ 225 (257)
T PRK09242 225 E 225 (257)
T ss_pred H
Confidence 3
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=265.51 Aligned_cols=211 Identities=26% Similarity=0.374 Sum_probs=174.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEE-cCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAV-RNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++|++|||||++|||+++|++|+++|++|++++ |+.+++++..+++... +..+..+.+|+++.++++.++++
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 75 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN------GGSAFSIGANLESLHGVEALYSS 75 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhc------CCceEEEecccCCHHHHHHHHHH
Confidence 3579999999999999999999999999999875 6667777777666542 23578889999999999999888
Q ss_pred Hhc----ccC--CccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 142 WNG----RLG--PLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 142 ~~~----~~g--~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+.+ .+| ++|+||||||+....++.+.+.++|++.+++|+.+++.++++++|.|++ .|+||++||.++..+.
T Consensus 76 ~~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~--~g~iv~isS~~~~~~~- 152 (252)
T PRK12747 76 LDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRD--NSRIINISSAATRISL- 152 (252)
T ss_pred HHHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhc--CCeEEEECCcccccCC-
Confidence 765 334 8999999999876667888899999999999999999999999999975 4899999999866554
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc--hHHHHHHHH-hhhhcc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYH-LIPYFI 292 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~--~~~~~~~~~-~~p~~~ 292 (298)
+....|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++.+.. .+..+.... ..|+++
T Consensus 153 --------------~~~~~Y~~sKaa~~~~~~~la~e~-~~~girvn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 217 (252)
T PRK12747 153 --------------PDFIAYSMTKGAINTMTFTLAKQL-GARGITVNAILPGFIKTDMNAELLSDPMMKQYATTISAFNR 217 (252)
T ss_pred --------------CCchhHHHHHHHHHHHHHHHHHHH-hHcCCEEEEEecCCccCchhhhcccCHHHHHHHHhcCcccC
Confidence 667789999999999999999999 88999999999999999997543 112222222 235655
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 218 ~~~~~d 223 (252)
T PRK12747 218 LGEVED 223 (252)
T ss_pred CCCHHH
Confidence 5 6654
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=267.91 Aligned_cols=209 Identities=22% Similarity=0.270 Sum_probs=175.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.+++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++++|++|++++++++++
T Consensus 3 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~ 73 (263)
T PRK06200 3 WLHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFG---------DHVLVVEGDVTSYADNQRAVDQ 73 (263)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CcceEEEccCCCHHHHHHHHHH
Confidence 3678999999999999999999999999999999999888776655431 2578899999999999999999
Q ss_pred HhcccCCccEEEEccCCCC-CCCCCccChhh----HHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 142 WNGRLGPLHVLINNAGIFS-IGEPQKFSKDG----YEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~-~~~~~~~~~~~----~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
+.+.+|++|+||||||+.. ..++.+.+.++ |++.+++|+.+++.+++.++|.|+++ +|+||++||.+++.+.
T Consensus 74 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~g~iv~~sS~~~~~~~-- 150 (263)
T PRK06200 74 TVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKAS-GGSMIFTLSNSSFYPG-- 150 (263)
T ss_pred HHHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhc-CCEEEEECChhhcCCC--
Confidence 9999999999999999864 34555666665 89999999999999999999998765 4899999999876554
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC------------chHHHHHH
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD------------LPKIVQAA 284 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~------------~~~~~~~~ 284 (298)
++...|++||+|+.+|+++|+.|+ .+ +|+||+|+||+|+|+|... .++..+..
T Consensus 151 -------------~~~~~Y~~sK~a~~~~~~~la~el-~~-~Irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (263)
T PRK06200 151 -------------GGGPLYTASKHAVVGLVRQLAYEL-AP-KIRVNGVAPGGTVTDLRGPASLGQGETSISDSPGLADMI 215 (263)
T ss_pred -------------CCCchhHHHHHHHHHHHHHHHHHH-hc-CcEEEEEeCCccccCCcCccccCCCCcccccccchhHHh
Confidence 566789999999999999999999 65 4999999999999998642 12223344
Q ss_pred HHhhhhccc-CCCC
Q 022369 285 YHLIPYFIF-NPQE 297 (298)
Q Consensus 285 ~~~~p~~~~-~pe~ 297 (298)
....|++++ +|||
T Consensus 216 ~~~~p~~r~~~~~e 229 (263)
T PRK06200 216 AAITPLQFAPQPED 229 (263)
T ss_pred hcCCCCCCCCCHHH
Confidence 456788887 7765
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=264.74 Aligned_cols=214 Identities=26% Similarity=0.276 Sum_probs=184.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|+++||||++|||.++|++|+++|++|++++|+.+++++..+++.+. +.++.++.+|+++.+++.+++++
T Consensus 4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREA------GGEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999888887776542 23688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCC-CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSI-GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+.+|++|++|||||.... .++.+.+.+++++.+++|+.+++.++++++|.|.+++.++||++||..++.+.
T Consensus 78 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~------ 151 (253)
T PRK06172 78 TIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAA------ 151 (253)
T ss_pred HHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCC------
Confidence 99999999999999998643 34678899999999999999999999999999998888999999998866654
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc----hHHHHHHHHhhhhccc-CC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL----PKIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~----~~~~~~~~~~~p~~~~-~p 295 (298)
+....|+++|+++.+|+++++.|+ .++||+|++|+||+|+|++.+.. ++..+.+....|+.++ +|
T Consensus 152 ---------~~~~~Y~~sKaa~~~~~~~la~e~-~~~~i~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 221 (253)
T PRK06172 152 ---------PKMSIYAASKHAVIGLTKSAAIEY-AKKGIRVNAVCPAVIDTDMFRRAYEADPRKAEFAAAMHPVGRIGKV 221 (253)
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCCccChhhhhhcccChHHHHHHhccCCCCCccCH
Confidence 677889999999999999999999 78899999999999999997754 2222334445676665 66
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
+|
T Consensus 222 ~~ 223 (253)
T PRK06172 222 EE 223 (253)
T ss_pred HH
Confidence 54
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=265.59 Aligned_cols=196 Identities=22% Similarity=0.365 Sum_probs=177.8
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+..++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+.+... +.++.++++|++|+++++++
T Consensus 4 ~~~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~ 77 (265)
T PRK07097 4 NLFSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYREL------GIEAHGYVCDVTDEDGVQAM 77 (265)
T ss_pred cccCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHH
Confidence 345678999999999999999999999999999999999998888877776542 23688999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++++.+.++++|+||||||+....++.+.+.++|++.+++|+.+++.+++.++|+|++++.|+||++||..+..+.
T Consensus 78 ~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 153 (265)
T PRK07097 78 VSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGR---- 153 (265)
T ss_pred HHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCCC----
Confidence 9999999999999999999987778888999999999999999999999999999998888999999998765544
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++.+|+++++.|+ .++||+|++|+||.++|++...
T Consensus 154 -----------~~~~~Y~~sKaal~~l~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~ 199 (265)
T PRK07097 154 -----------ETVSAYAAAKGGLKMLTKNIASEY-GEANIQCNGIGPGYIATPQTAP 199 (265)
T ss_pred -----------CCCccHHHHHHHHHHHHHHHHHHh-hhcCceEEEEEeccccccchhh
Confidence 667789999999999999999999 7889999999999999998654
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=257.99 Aligned_cols=188 Identities=22% Similarity=0.323 Sum_probs=167.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||.|++|||.+|||++++++|+++|.++.+++.+.|+.+.. .++++..+ ...+.+++||+++..++++.+++
T Consensus 2 ~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~-akL~ai~p----~~~v~F~~~DVt~~~~~~~~f~k 76 (261)
T KOG4169|consen 2 DLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAI-AKLQAINP----SVSVIFIKCDVTNRGDLEAAFDK 76 (261)
T ss_pred cccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHH-HHHhccCC----CceEEEEEeccccHHHHHHHHHH
Confidence 57899999999999999999999999999999998888886554 45555443 35899999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC---CCeEEEEcCCccccCCCCcc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS---PSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~---~g~Iv~isS~~~~~~~~~~~ 218 (298)
+...+|.||++||+||+.. +.+|++++++|+.|.++-+...+|+|.+++ +|-|||+||+.|+.+.
T Consensus 77 i~~~fg~iDIlINgAGi~~--------dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~---- 144 (261)
T KOG4169|consen 77 ILATFGTIDILINGAGILD--------DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPM---- 144 (261)
T ss_pred HHHHhCceEEEEccccccc--------chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCcc----
Confidence 9999999999999999963 467999999999999999999999998865 6789999999977776
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcC-CCCCcEEEEeeCCccccCccCCc
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLP-AESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~-~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
|-...|+|||+++.+|+|+|+.+.- .+.||++++||||++.|.+.+.+
T Consensus 145 -----------p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t~t~l~~~~ 193 (261)
T KOG4169|consen 145 -----------PVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFTRTDLAENI 193 (261)
T ss_pred -----------ccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcchHHHHHHH
Confidence 7888899999999999999987742 56799999999999999998766
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=263.52 Aligned_cols=217 Identities=23% Similarity=0.348 Sum_probs=188.0
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+..++++|++|||||++|||+++|++|+++|++|++++|+++++++..+++... +.++.++++|++|+++++++
T Consensus 4 ~~~~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~~~~~~~~~D~~~~~~~~~~ 77 (255)
T PRK07523 4 NLFDLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQ------GLSAHALAFDVTDHDAVRAA 77 (255)
T ss_pred cccCCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CceEEEEEccCCCHHHHHHH
Confidence 344678999999999999999999999999999999999998888877776542 23688999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++++.+.++++|++|||||.....++.+.+.++|++.+++|+.+++++++++.+.|.+++.|+||++||..+..+.
T Consensus 78 ~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~---- 153 (255)
T PRK07523 78 IDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALAR---- 153 (255)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccCC----
Confidence 9999999999999999999987778888999999999999999999999999999998888999999998654433
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-C
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~ 294 (298)
+....|+++|+++.+++++++.|+ .++||+|++|+||+++|++.+.. +...+.+....|+.++ +
T Consensus 154 -----------~~~~~y~~sK~a~~~~~~~~a~e~-~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (255)
T PRK07523 154 -----------PGIAPYTATKGAVGNLTKGMATDW-AKHGLQCNAIAPGYFDTPLNAALVADPEFSAWLEKRTPAGRWGK 221 (255)
T ss_pred -----------CCCccHHHHHHHHHHHHHHHHHHh-hHhCeEEEEEEECcccCchhhhhccCHHHHHHHHhcCCCCCCcC
Confidence 677889999999999999999999 78899999999999999986543 2223344446677776 5
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 222 ~~d 224 (255)
T PRK07523 222 VEE 224 (255)
T ss_pred HHH
Confidence 654
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=262.60 Aligned_cols=212 Identities=21% Similarity=0.307 Sum_probs=177.8
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++++|++|+++++++++++.+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQF------PGQVLTVQMDVRNPEDVQKMVEQIDE 74 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999988888877766542 13688999999999999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCccccCCCCccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
.+|++|++|||||.....++.+.+.++|++.+++|+.++++++++++|+|.++ ..|+||++||..+..+.
T Consensus 75 ~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~--------- 145 (252)
T PRK07677 75 KFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAG--------- 145 (252)
T ss_pred HhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCC---------
Confidence 99999999999997666677889999999999999999999999999999765 36899999999765544
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc-cCC---chHHHHHHHHhhhhccc-CCCC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV-ARD---LPKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~-~~~---~~~~~~~~~~~~p~~~~-~pe~ 297 (298)
+....|++||+|+.+|+++|+.|+...+||+|++|+||+++|+. ... .++..+...+..|+.++ +|||
T Consensus 146 ------~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (252)
T PRK07677 146 ------PGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWESEEAAKRTIQSVPLGRLGTPEE 218 (252)
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccccCCHHHHHHHhccCCCCCCCCHHH
Confidence 56678999999999999999999943579999999999999643 222 12223334445676666 5554
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=273.22 Aligned_cols=218 Identities=16% Similarity=0.156 Sum_probs=162.1
Q ss_pred CCCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhc----CCCCCc-----cEEEEEcCC
Q 022369 61 PPVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWS----GKGLPL-----NIEAMELDL 129 (298)
Q Consensus 61 ~~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~~~D~ 129 (298)
.+++||++|||||+ +|||+++|++|+++|++|++.++. +.++...+....... ....+. ++..+.+|+
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~ 82 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWV-PIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASF 82 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEecc-chhhhhhhhcccccccccccccccchhhhhhHHHhhhhc
Confidence 46789999999996 999999999999999999998765 222222111111000 000000 111122333
Q ss_pred CCH------------------HHHHHHHHHHhcccCCccEEEEccCCCC--CCCCCccChhhHHHHHhhhchHHHHHHHH
Q 022369 130 LSL------------------DSVVRFSEAWNGRLGPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHLAPALLSIL 189 (298)
Q Consensus 130 s~~------------------~~v~~~~~~~~~~~g~idilVnnag~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ 189 (298)
++. ++++++++++.+++|++|+||||||+.. ..++.+++.++|++.+++|+.|+++++++
T Consensus 83 ~~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a 162 (299)
T PRK06300 83 DTPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSH 162 (299)
T ss_pred CCCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHH
Confidence 333 3589999999999999999999999754 46788999999999999999999999999
Q ss_pred HhhhhhcCCCCeEEEEcCCccccCCCCcccccccccccCCCCcc-cchhhHHHHHHHHHHHHHHcCCC-CCcEEEEeeCC
Q 022369 190 LFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLM-GYSGSKLAQIKFSSILQKRLPAE-SGINVVCVSPG 267 (298)
Q Consensus 190 ~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~asKaa~~~l~~~l~~e~~~~-~gI~v~~v~Pg 267 (298)
++|+|++ +|+||+++|..+..+. |.+. .|++||+|+.+|+++|+.|+ .+ +|||||+|+||
T Consensus 163 ~~p~m~~--~G~ii~iss~~~~~~~---------------p~~~~~Y~asKaAl~~lt~~la~el-~~~~gIrVn~V~PG 224 (299)
T PRK06300 163 FGPIMNP--GGSTISLTYLASMRAV---------------PGYGGGMSSAKAALESDTKVLAWEA-GRRWGIRVNTISAG 224 (299)
T ss_pred HHHHhhc--CCeEEEEeehhhcCcC---------------CCccHHHHHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEeC
Confidence 9999975 4799999998765544 5553 79999999999999999999 55 59999999999
Q ss_pred ccccCccCCch---HHHHHHHHhhhhccc-CCCC
Q 022369 268 IVSTNVARDLP---KIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 268 ~v~T~~~~~~~---~~~~~~~~~~p~~~~-~pe~ 297 (298)
+++|++..... +..+......|+.++ +|||
T Consensus 225 ~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pee 258 (299)
T PRK06300 225 PLASRAGKAIGFIERMVDYYQDWAPLPEPMEAEQ 258 (299)
T ss_pred CccChhhhcccccHHHHHHHHhcCCCCCCcCHHH
Confidence 99999975432 222333345666655 5553
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-36 Score=262.13 Aligned_cols=214 Identities=25% Similarity=0.326 Sum_probs=184.4
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
..+++|+++||||++|||.++|++|+++|++|++++|+.+.+++..+++... +.++.++.+|+++.++++++++
T Consensus 7 ~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~i~~~~~ 80 (255)
T PRK06113 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL------GGQAFACRCDITSEQELSALAD 80 (255)
T ss_pred cCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHH
Confidence 3577999999999999999999999999999999999998888887776542 2368889999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
.+.+.++++|++|||||.....++ +.+.++|++.+++|+.++++++++++|+|.+.+.|+||++||..+..+.
T Consensus 81 ~~~~~~~~~d~li~~ag~~~~~~~-~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------ 153 (255)
T PRK06113 81 FALSKLGKVDILVNNAGGGGPKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN------ 153 (255)
T ss_pred HHHHHcCCCCEEEECCCCCCCCCC-CCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccCCC------
Confidence 999999999999999998655444 6788999999999999999999999999988777899999998765544
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc--hHHHHHHHHhhhhccc-CCCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~--~~~~~~~~~~~p~~~~-~pe~ 297 (298)
++...|+++|+|+.+|+++++.|+ .++||+||+|+||+++|++.+.. ++..+...+..|+.++ +|||
T Consensus 154 ---------~~~~~Y~~sK~a~~~~~~~la~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 223 (255)
T PRK06113 154 ---------INMTSYASSKAAASHLVRNMAFDL-GEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQD 223 (255)
T ss_pred ---------CCcchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEecccccccccccccCHHHHHHHHhcCCCCCCcCHHH
Confidence 667789999999999999999999 78899999999999999997753 3333444556676666 6664
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=263.62 Aligned_cols=210 Identities=23% Similarity=0.309 Sum_probs=174.6
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|+++||||++|||+++|++|+++|++|++++++.+.. .+++... .+.++++|++|++++++++++
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~---~~~l~~~--------~~~~~~~Dl~~~~~~~~~~~~ 72 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENE---AKELREK--------GVFTIKCDVGNRDQVKKSKEV 72 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHH---HHHHHhC--------CCeEEEecCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999987765432 2222221 367889999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+.+|++|+||||||+....++.+.+.++|++.+++|+.+++++++.++|.|++++.|+||++||..++...
T Consensus 73 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~------- 145 (255)
T PRK06463 73 VEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTA------- 145 (255)
T ss_pred HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCC-------
Confidence 9999999999999999977677888899999999999999999999999999998888999999998765321
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc--h----HHHHHHHHhhhhccc-C
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--P----KIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~--~----~~~~~~~~~~p~~~~-~ 294 (298)
.+....|++||+|+.+|+++++.|+ .++||+|++|+||+++|++.... + +..+.+....|++++ +
T Consensus 146 -------~~~~~~Y~asKaa~~~~~~~la~e~-~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (255)
T PRK06463 146 -------AEGTTFYAITKAGIIILTRRLAFEL-GKYGIRVNAVAPGWVETDMTLSGKSQEEAEKLRELFRNKTVLKTTGK 217 (255)
T ss_pred -------CCCccHhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCCCCCchhhcccCccchHHHHHHHHhCCCcCCCcC
Confidence 1456779999999999999999999 78899999999999999987431 1 222333445677666 6
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 218 ~~~ 220 (255)
T PRK06463 218 PED 220 (255)
T ss_pred HHH
Confidence 654
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=268.51 Aligned_cols=212 Identities=25% Similarity=0.304 Sum_probs=177.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
++++|++|||||++|||+++|++|+++|++|++++|+. +..+++.+.+.+. +.++.++++|++|++++.+++
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~ 119 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEEC------GRKAVLLPGDLSDEKFARSLV 119 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHc------CCeEEEEEccCCCHHHHHHHH
Confidence 57889999999999999999999999999999988753 3455554444321 236888999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+.+|++|++|||||... ..++.+.+.++|++.+++|+.+++.++++++|+|.+ .|+||++||..++.+.
T Consensus 120 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~--~g~iv~iSS~~~~~~~---- 193 (294)
T PRK07985 120 HEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPK--GASIITTSSIQAYQPS---- 193 (294)
T ss_pred HHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhc--CCEEEEECCchhccCC----
Confidence 999999999999999999753 356778899999999999999999999999999965 4799999999866554
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC--ch-HHHHHHHHhhhhccc-C
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD--LP-KIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~--~~-~~~~~~~~~~p~~~~-~ 294 (298)
+....|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++... .+ +..+.+....|++++ +
T Consensus 194 -----------~~~~~Y~asKaal~~l~~~la~el-~~~gIrvn~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~r~~~ 261 (294)
T PRK07985 194 -----------PHLLDYAATKAAILNYSRGLAKQV-AEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQ 261 (294)
T ss_pred -----------CCcchhHHHHHHHHHHHHHHHHHH-hHhCcEEEEEECCcCccccccccCCCHHHHHHHhccCCCCCCCC
Confidence 667789999999999999999999 8889999999999999998532 12 223344456787776 7
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 262 ped 264 (294)
T PRK07985 262 PAE 264 (294)
T ss_pred HHH
Confidence 764
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=263.44 Aligned_cols=211 Identities=22% Similarity=0.310 Sum_probs=179.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+.. +.++.++.+|++|++++++++++
T Consensus 4 ~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~~~~~~~~ 78 (259)
T PRK06125 4 HLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-----GVDVAVHALDLSSPEAREQLAAE 78 (259)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-----CCceEEEEecCCCHHHHHHHHHH
Confidence 4678999999999999999999999999999999999998888877776532 23688899999999999888765
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
++++|++|||||+....++.+.+.++|++.+++|+.++++++++++|.|.+++.|+||++||..+..+.
T Consensus 79 ----~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~~~------- 147 (259)
T PRK06125 79 ----AGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGENPD------- 147 (259)
T ss_pred ----hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccCCC-------
Confidence 479999999999877778889999999999999999999999999999998878999999998754433
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-----------hHHHHHHHHhhhh
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-----------PKIVQAAYHLIPY 290 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-----------~~~~~~~~~~~p~ 290 (298)
+.+..|+++|+|+.+|+++++.|+ .++||+||+|+||+++|++.... ++..+.+....|+
T Consensus 148 --------~~~~~y~ask~al~~~~~~la~e~-~~~gi~v~~i~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (259)
T PRK06125 148 --------ADYICGSAGNAALMAFTRALGGKS-LDDGVRVVGVNPGPVATDRMLTLLKGRARAELGDESRWQELLAGLPL 218 (259)
T ss_pred --------CCchHhHHHHHHHHHHHHHHHHHh-CccCeEEEEEecCccccHHHHHHHHhhhhcccCCHHHHHHHhccCCc
Confidence 667789999999999999999999 88999999999999999975421 1222333345677
Q ss_pred ccc-CCCC
Q 022369 291 FIF-NPQE 297 (298)
Q Consensus 291 ~~~-~pe~ 297 (298)
.++ +|||
T Consensus 219 ~~~~~~~~ 226 (259)
T PRK06125 219 GRPATPEE 226 (259)
T ss_pred CCCcCHHH
Confidence 666 5654
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=265.50 Aligned_cols=209 Identities=22% Similarity=0.264 Sum_probs=171.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+.. +.++.++++|+++.+++++++++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~---------~~~~~~~~~D~~~~~~~~~~~~~ 72 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAH---------GDAVVGVEGDVRSLDDHKEAVAR 72 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc---------CCceEEEEeccCCHHHHHHHHHH
Confidence 367899999999999999999999999999999999987776654321 13688899999999999999999
Q ss_pred HhcccCCccEEEEccCCCC-CCCCCccCh----hhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 142 WNGRLGPLHVLINNAGIFS-IGEPQKFSK----DGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~-~~~~~~~~~----~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
+.+.+|++|+||||||+.. ..++.+.+. ++|++.+++|+.+++.++++++|.|.+++ |+||+++|..++.+.
T Consensus 73 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~~sS~~~~~~~-- 149 (262)
T TIGR03325 73 CVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASR-GSVIFTISNAGFYPN-- 149 (262)
T ss_pred HHHHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcC-CCEEEEeccceecCC--
Confidence 9999999999999999753 233444443 57999999999999999999999998754 899999998766544
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc----hH-------HHHHHH
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL----PK-------IVQAAY 285 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~----~~-------~~~~~~ 285 (298)
+....|++||+|+.+|+++++.|+ .++ |+||+|+||+++|+|.... .. ..+...
T Consensus 150 -------------~~~~~Y~~sKaa~~~l~~~la~e~-~~~-irvn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (262)
T TIGR03325 150 -------------GGGPLYTAAKHAVVGLVKELAFEL-APY-VRVNGVAPGGMSSDLRGPKSLGMADKSISTVPLGDMLK 214 (262)
T ss_pred -------------CCCchhHHHHHHHHHHHHHHHHhh-ccC-eEEEEEecCCCcCCCccccccccccccccccchhhhhh
Confidence 566789999999999999999999 666 9999999999999986431 10 112233
Q ss_pred Hhhhhccc-CCCC
Q 022369 286 HLIPYFIF-NPQE 297 (298)
Q Consensus 286 ~~~p~~~~-~pe~ 297 (298)
...|++++ +|||
T Consensus 215 ~~~p~~r~~~p~e 227 (262)
T TIGR03325 215 SVLPIGRMPDAEE 227 (262)
T ss_pred hcCCCCCCCChHH
Confidence 46788887 7775
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=260.91 Aligned_cols=212 Identities=26% Similarity=0.414 Sum_probs=178.6
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||.++|++|+++|++|++++|+.. ++..+.+++. +.++.++++|+++++++.+++++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 73 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEAL------GRRFLSLTADLSDIEAIKALVDS 73 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhc------CCceEEEECCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999752 3344444331 23688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+.++++|++|||||.....++.+.+.++|++.+++|+.+++.++++++|.|.+++ .|+||++||..++.+.
T Consensus 74 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------ 147 (248)
T TIGR01832 74 AVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQGG------ 147 (248)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhccCC------
Confidence 999999999999999998767778889999999999999999999999999998765 7899999998766544
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~~~~-~pe 296 (298)
+....|+++|+++.+++++++.|+ .++||+|++|+||+|+|++.+... +..+......|.+++ +||
T Consensus 148 ---------~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (248)
T TIGR01832 148 ---------IRVPSYTASKHGVAGLTKLLANEW-AAKGINVNAIAPGYMATNNTQALRADEDRNAAILERIPAGRWGTPD 217 (248)
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHh-CccCcEEEEEEECcCcCcchhccccChHHHHHHHhcCCCCCCcCHH
Confidence 556679999999999999999999 888999999999999999876432 222334456677666 665
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 218 d 218 (248)
T TIGR01832 218 D 218 (248)
T ss_pred H
Confidence 4
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=267.90 Aligned_cols=213 Identities=27% Similarity=0.340 Sum_probs=178.5
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch--HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK--AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
..++||++|||||++|||+++|++|+++|++|+++.++.+ ..+++.+.++.. +.++.++++|++|.++++++
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~v~~~ 124 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAE------GRKAVALPGDLKDEAFCRQL 124 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHH
Confidence 3578899999999999999999999999999999887643 345555555432 23688999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
++++.+.+|++|+||||||+.. ..++.+.+.++|++.+++|+.|+++++++++|+|.+ +++||++||..++.+.
T Consensus 125 ~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~~~iv~~sS~~~~~~~--- 199 (300)
T PRK06128 125 VERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPP--GASIINTGSIQSYQPS--- 199 (300)
T ss_pred HHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCc--CCEEEEECCccccCCC---
Confidence 9999999999999999999853 456788899999999999999999999999999975 4799999999876654
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF- 293 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~- 293 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+++|++.... .+..+.+....|++++
T Consensus 200 ------------~~~~~Y~asK~a~~~~~~~la~el-~~~gI~v~~v~PG~i~t~~~~~~~~~~~~~~~~~~~~p~~r~~ 266 (300)
T PRK06128 200 ------------PTLLDYASTKAAIVAFTKALAKQV-AEKGIRVNAVAPGPVWTPLQPSGGQPPEKIPDFGSETPMKRPG 266 (300)
T ss_pred ------------CCchhHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEECcCcCCCcccCCCCHHHHHHHhcCCCCCCCc
Confidence 667789999999999999999999 88899999999999999996532 2333334446777776
Q ss_pred CCCC
Q 022369 294 NPQE 297 (298)
Q Consensus 294 ~pe~ 297 (298)
+|+|
T Consensus 267 ~p~d 270 (300)
T PRK06128 267 QPVE 270 (300)
T ss_pred CHHH
Confidence 6654
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=244.62 Aligned_cols=185 Identities=30% Similarity=0.400 Sum_probs=167.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.+.|.++|||||++|||+++|++|.+.|..||+++|++++++++.++.. .++...||+.|.++.+++++.
T Consensus 2 k~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p----------~~~t~v~Dv~d~~~~~~lvew 71 (245)
T COG3967 2 KTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENP----------EIHTEVCDVADRDSRRELVEW 71 (245)
T ss_pred cccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCc----------chheeeecccchhhHHHHHHH
Confidence 4678999999999999999999999999999999999999998876642 578889999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCC--ccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQ--KFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~--~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.|+.+++||||||+-..-.+. +.+.++.++-+.+|+.++++++++++|+++++..+.||||||..++.++
T Consensus 72 Lkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm----- 146 (245)
T COG3967 72 LKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPM----- 146 (245)
T ss_pred HHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCcc-----
Confidence 999999999999999997644332 4466778889999999999999999999999999999999999988877
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
.....||++|+|+..++.+|+..+ +..+|.|.-+.|..|+|+
T Consensus 147 ----------~~~PvYcaTKAaiHsyt~aLR~Ql-k~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 147 ----------ASTPVYCATKAAIHSYTLALREQL-KDTSVEVIELAPPLVDTT 188 (245)
T ss_pred ----------cccccchhhHHHHHHHHHHHHHHh-hhcceEEEEecCCceecC
Confidence 556669999999999999999999 778899999999999997
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=261.20 Aligned_cols=190 Identities=26% Similarity=0.314 Sum_probs=172.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|++|||||++|||.++|++|+++|++|++++|+.+++++..+++... +.++.++++|++++++++++++++.+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKD------GGKAIAVKADVSDRDQVFAAVRQVVD 75 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999998888887777542 13688899999999999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
++|++|++|||||+....++.+.+.+++++.+++|+.+++.+++.+++.|++.+ .|+||++||..+..+.
T Consensus 76 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------- 146 (256)
T PRK08643 76 TFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGN--------- 146 (256)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCC---------
Confidence 999999999999987777788889999999999999999999999999998754 5899999998766554
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
++...|+++|+++..|++.++.|+ .++||+|++|+||+++|+++..
T Consensus 147 ------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~Pg~v~t~~~~~ 192 (256)
T PRK08643 147 ------PELAVYSSTKFAVRGLTQTAARDL-ASEGITVNAYAPGIVKTPMMFD 192 (256)
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHh-cccCcEEEEEeeCCCcChhhhH
Confidence 667789999999999999999999 8889999999999999999764
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=258.14 Aligned_cols=195 Identities=29% Similarity=0.432 Sum_probs=174.4
Q ss_pred CCCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHH
Q 022369 56 NPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSV 135 (298)
Q Consensus 56 ~~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v 135 (298)
......+..+|.|+|||+.+|+|+.+|++|.++|++|+..+-+++..+.+..+... .+...+++|++++++|
T Consensus 20 ~~~~~~~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s--------~rl~t~~LDVT~~esi 91 (322)
T KOG1610|consen 20 ERQVLDSLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKS--------PRLRTLQLDVTKPESV 91 (322)
T ss_pred hhhcccccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcC--------CcceeEeeccCCHHHH
Confidence 34555677889999999999999999999999999999999888888877666531 4788889999999999
Q ss_pred HHHHHHHhcccC--CccEEEEccCCC-CCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcccc
Q 022369 136 VRFSEAWNGRLG--PLHVLINNAGIF-SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYV 212 (298)
Q Consensus 136 ~~~~~~~~~~~g--~idilVnnag~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~ 212 (298)
+++.+.+++..+ .+..||||||+. ..++.+-.+.+++++.+++|++|++.+|++++|.+++.+ ||||||||+.|..
T Consensus 92 ~~a~~~V~~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar-GRvVnvsS~~GR~ 170 (322)
T KOG1610|consen 92 KEAAQWVKKHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR-GRVVNVSSVLGRV 170 (322)
T ss_pred HHHHHHHHHhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc-CeEEEecccccCc
Confidence 999998888664 499999999976 467888899999999999999999999999999887755 9999999998655
Q ss_pred CCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 213 GFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+. |..++|++||+|++.|+++|++|+ .+.||+|..|.||...|++.+
T Consensus 171 ~~---------------p~~g~Y~~SK~aVeaf~D~lR~EL-~~fGV~VsiiePG~f~T~l~~ 217 (322)
T KOG1610|consen 171 AL---------------PALGPYCVSKFAVEAFSDSLRREL-RPFGVKVSIIEPGFFKTNLAN 217 (322)
T ss_pred cC---------------cccccchhhHHHHHHHHHHHHHHH-HhcCcEEEEeccCccccccCC
Confidence 54 899999999999999999999999 999999999999999999987
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=260.85 Aligned_cols=214 Identities=24% Similarity=0.347 Sum_probs=181.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc-hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL-KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|++|||||++|||+++|++|+++|++|++++|+. +..+...+++... +.++.++.+|++|.++++++++
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~i~~~~~ 77 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKA------GGEAIAVKGDVTVESDVVNLIQ 77 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc------CCeEEEEEecCCCHHHHHHHHH
Confidence 57899999999999999999999999999999998854 4556666666442 2368889999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+.+|++|++|||||.....++.+.+.++|++.+++|+.+++.+++.+++.|.+++ .|+||++||..+..+.
T Consensus 78 ~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~----- 152 (261)
T PRK08936 78 TAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPW----- 152 (261)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCCC-----
Confidence 9999999999999999987777788889999999999999999999999999998765 6899999998654443
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC-c--hHHHHHHHHhhhhccc-CC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD-L--PKIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~-~--~~~~~~~~~~~p~~~~-~p 295 (298)
+....|+++|+|+.+|+++++.|+ .++||+|++|+||+|+|++.+. . ++.........|+.++ +|
T Consensus 153 ----------~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (261)
T PRK08936 153 ----------PLFVHYAASKGGVKLMTETLAMEY-APKGIRVNNIGPGAINTPINAEKFADPKQRADVESMIPMGYIGKP 221 (261)
T ss_pred ----------CCCcccHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEECcCCCCccccccCCHHHHHHHHhcCCCCCCcCH
Confidence 777889999999999999999999 7789999999999999998653 2 2223333446677666 66
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 222 ~~ 223 (261)
T PRK08936 222 EE 223 (261)
T ss_pred HH
Confidence 54
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=289.03 Aligned_cols=209 Identities=23% Similarity=0.299 Sum_probs=180.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
...||++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++..+.+|++|++++++++++
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~ 336 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG---------DEHLSVQADITDEAAVESAFAQ 336 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CceeEEEccCCCHHHHHHHHHH
Confidence 3478999999999999999999999999999999999888877765531 2577889999999999999999
Q ss_pred HhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.|++++++.++|+| ++.|+|||+||.++..+.
T Consensus 337 ~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~--~~~g~iv~isS~~~~~~~------ 408 (520)
T PRK06484 337 IQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLM--SQGGVIVNLGSIASLLAL------ 408 (520)
T ss_pred HHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHh--ccCCEEEEECchhhcCCC------
Confidence 9999999999999999863 3567888999999999999999999999999999 346899999999876654
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch----HHHHHHHHhhhhccc-CC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP----KIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~----~~~~~~~~~~p~~~~-~p 295 (298)
++...|++||+++.+|+++|+.|+ .++||+||+|+||+|+|+|.+... ...+.+.+..|+.++ +|
T Consensus 409 ---------~~~~~Y~asKaal~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (520)
T PRK06484 409 ---------PPRNAYCASKAAVTMLSRSLACEW-APAGIRVNTVAPGYIETPAVLALKASGRADFDSIRRRIPLGRLGDP 478 (520)
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEeCCccCchhhhhccccHHHHHHHHhcCCCCCCcCH
Confidence 777889999999999999999999 788999999999999999976432 223344456677666 66
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 479 ~d 480 (520)
T PRK06484 479 EE 480 (520)
T ss_pred HH
Confidence 54
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=262.11 Aligned_cols=211 Identities=22% Similarity=0.320 Sum_probs=175.5
Q ss_pred EEEEeCCCCchHHHHHHHHHH----cCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAE----SGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~----~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
++|||||++|||+++|++|++ .|++|++++|+.++++++.+++....+ +.++.++++|++|+++++++++++
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~----~~~v~~~~~Dl~~~~~v~~~~~~~ 77 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERS----GLRVVRVSLDLGAEAGLEQLLKAL 77 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCC----CceEEEEEeccCCHHHHHHHHHHH
Confidence 689999999999999999997 799999999999999988888764221 236889999999999999999999
Q ss_pred hcccCCc----cEEEEccCCCCCC--CCCcc-ChhhHHHHHhhhchHHHHHHHHHhhhhhcCC--CCeEEEEcCCccccC
Q 022369 143 NGRLGPL----HVLINNAGIFSIG--EPQKF-SKDGYEEHMQVNHLAPALLSILLFPSLIRGS--PSRIINVNSVMHYVG 213 (298)
Q Consensus 143 ~~~~g~i----dilVnnag~~~~~--~~~~~-~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~--~g~Iv~isS~~~~~~ 213 (298)
.+.+|.+ |+||||||+.... ...+. +.++|++.+++|+.+++.+++.++|.|++++ .|+||++||..+..+
T Consensus 78 ~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~ 157 (256)
T TIGR01500 78 RELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQP 157 (256)
T ss_pred HhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCC
Confidence 8887653 6999999975432 22333 4689999999999999999999999998753 579999999876554
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------hHHHHHHHHh
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------PKIVQAAYHL 287 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------~~~~~~~~~~ 287 (298)
. +....|++||+|+.+|+++|+.|+ .+.||+|++|+||+|+|+|.+.. ++..+.+...
T Consensus 158 ~---------------~~~~~Y~asKaal~~l~~~la~e~-~~~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 221 (256)
T TIGR01500 158 F---------------KGWALYCAGKAARDMLFQVLALEE-KNPNVRVLNYAPGVLDTDMQQQVREESVDPDMRKGLQEL 221 (256)
T ss_pred C---------------CCchHHHHHHHHHHHHHHHHHHHh-cCCCeEEEEecCCcccchHHHHHHHhcCChhHHHHHHHH
Confidence 4 777889999999999999999999 78899999999999999997643 2233344557
Q ss_pred hhhccc-CCCC
Q 022369 288 IPYFIF-NPQE 297 (298)
Q Consensus 288 ~p~~~~-~pe~ 297 (298)
.|+.++ +|||
T Consensus 222 ~~~~~~~~p~e 232 (256)
T TIGR01500 222 KAKGKLVDPKV 232 (256)
T ss_pred HhcCCCCCHHH
Confidence 788777 7775
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=262.22 Aligned_cols=190 Identities=26% Similarity=0.354 Sum_probs=174.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++++++|||||++|||+++|++|+++|++|++++|++++++++.+++. ++.++.+|++|++++++++++
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~----------~~~~~~~D~~~~~~~~~~~~~ 71 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG----------LVVGGPLDVTDPASFAAFLDA 71 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc----------cceEEEccCCCHHHHHHHHHH
Confidence 4668999999999999999999999999999999999988877765542 467889999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+.++++|++|||||+....++.+.+.+++++.+++|+.|++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 72 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 144 (273)
T PRK07825 72 VEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPV------- 144 (273)
T ss_pred HHHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCC-------
Confidence 9999999999999999988778888999999999999999999999999999999989999999999876655
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
++...|++||+++.+|+++++.|+ .+.||+|++|+||+++|++....
T Consensus 145 --------~~~~~Y~asKaa~~~~~~~l~~el-~~~gi~v~~v~Pg~v~t~~~~~~ 191 (273)
T PRK07825 145 --------PGMATYCASKHAVVGFTDAARLEL-RGTGVHVSVVLPSFVNTELIAGT 191 (273)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHh-hccCcEEEEEeCCcCcchhhccc
Confidence 777889999999999999999999 78899999999999999987643
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=267.40 Aligned_cols=216 Identities=34% Similarity=0.537 Sum_probs=179.3
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
..+.++++||++|||||++|||+++|++|+++|++|++++|+.++.++..+++.+..+ +.++.++++|++|.++++
T Consensus 8 ~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~d~~~v~ 83 (306)
T PRK06197 8 AADIPDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATP----GADVTLQELDLTSLASVR 83 (306)
T ss_pred ccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC----CCceEEEECCCCCHHHHH
Confidence 3456788999999999999999999999999999999999999988887777764322 236889999999999999
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcccc-CCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYV-GFV 215 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~-~~~ 215 (298)
++++++.++++++|+||||||+... ..+.+.++++..+++|+.|++.+++.++|.|++.+.++||++||..+.. +..
T Consensus 84 ~~~~~~~~~~~~iD~li~nAg~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~ 161 (306)
T PRK06197 84 AAADALRAAYPRIDLLINNAGVMYT--PKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAI 161 (306)
T ss_pred HHHHHHHhhCCCCCEEEECCccccC--CCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCC
Confidence 9999999999999999999998643 3456788999999999999999999999999988788999999987654 221
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEe--eCCccccCccCCchHHHH
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCV--SPGIVSTNVARDLPKIVQ 282 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v--~Pg~v~T~~~~~~~~~~~ 282 (298)
..++. ....++++...|++||+++..|++.++.|+ .+.||+|+++ +||+|+|+|.++.+....
T Consensus 162 ~~~~~---~~~~~~~~~~~Y~~SK~a~~~~~~~la~~l-~~~~i~v~~v~~~PG~v~T~~~~~~~~~~~ 226 (306)
T PRK06197 162 HFDDL---QWERRYNRVAAYGQSKLANLLFTYELQRRL-AAAGATTIAVAAHPGVSNTELARNLPRALR 226 (306)
T ss_pred Ccccc---CcccCCCcHHHHHHHHHHHHHHHHHHHHHh-hcCCCCeEEEEeCCCcccCcccccCcHHHH
Confidence 11121 122345667789999999999999999999 6778777655 799999999987765433
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=269.57 Aligned_cols=196 Identities=23% Similarity=0.310 Sum_probs=177.4
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.+++++|++|||||++|||+++|++|+++|++|++++|++++++++.+++.+. +.++.++++|++|++++++++
T Consensus 3 ~~~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~------g~~~~~v~~Dv~d~~~v~~~~ 76 (334)
T PRK07109 3 LKPIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAA------GGEALAVVADVADAEAVQAAA 76 (334)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc------CCcEEEEEecCCCHHHHHHHH
Confidence 34577899999999999999999999999999999999999998888877642 247889999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+++|++|++|||||.....++.+.+.+++++.+++|+.|++++++.++|+|++++.|+||++||..++.+.
T Consensus 77 ~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~~~----- 151 (334)
T PRK07109 77 DRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYRSI----- 151 (334)
T ss_pred HHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhccCC-----
Confidence 999999999999999999887778889999999999999999999999999999999888999999999876654
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCC-CCCcEEEEeeCCccccCccCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPA-ESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~-~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++.+|+++++.|+.. ..+|+|++|+||.++|++...
T Consensus 152 ----------~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~~ 199 (334)
T PRK07109 152 ----------PLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFDW 199 (334)
T ss_pred ----------CcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhhh
Confidence 67788999999999999999999832 357999999999999998653
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=259.11 Aligned_cols=187 Identities=24% Similarity=0.286 Sum_probs=164.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+. ..++..+++... +.++.++.+|+++++++++++++
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 77 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE-LVHEVAAELRAA------GGEALALTADLETYAGAQAAMAA 77 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch-HHHHHHHHHHhc------CCeEEEEEEeCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999985 344455554331 24688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+.++++|+||||||... ..++.+.+.++|++.+++|+.+++++++.++|.|++++.|+||++||..++.
T Consensus 78 ~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-------- 149 (260)
T PRK12823 78 AVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRG-------- 149 (260)
T ss_pred HHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccC--------
Confidence 9999999999999999653 4678889999999999999999999999999999988889999999986431
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
+....|++||+++.+|+++++.|+ .++||+|++|+||+|+|++
T Consensus 150 ---------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~ 192 (260)
T PRK12823 150 ---------INRVPYSAAKGGVNALTASLAFEY-AEHGIRVNAVAPGGTEAPP 192 (260)
T ss_pred ---------CCCCccHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCccCCcc
Confidence 234569999999999999999999 7889999999999999986
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=243.72 Aligned_cols=203 Identities=26% Similarity=0.343 Sum_probs=178.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++.|+.+++||+..|||+++++.|++.|+.|+.++|+++.+..++++.. ..+..+..|+++++.+.+.+..
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p---------~~I~Pi~~Dls~wea~~~~l~~ 74 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETP---------SLIIPIVGDLSAWEALFKLLVP 74 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCC---------cceeeeEecccHHHHHHHhhcc
Confidence 5789999999999999999999999999999999999999999887742 2588899999998877665544
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
.+.+|.||||||+....++.+++.++|++.|++|+.++++.+|.+...+..+ .+|.|||+||.++..+.
T Consensus 75 ----v~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~~------ 144 (245)
T KOG1207|consen 75 ----VFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRPL------ 144 (245)
T ss_pred ----cCchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhccccc------
Confidence 4799999999999999999999999999999999999999999977766554 47899999999865554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF 293 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~ 293 (298)
.+...||++|+|+.+++++|+.|+ .+++||||+|+|-.|.|+|.++. |...+.+..++|+.++
T Consensus 145 ---------~nHtvYcatKaALDmlTk~lAlEL-Gp~kIRVNsVNPTVVmT~MG~dnWSDP~K~k~mL~riPl~rF 210 (245)
T KOG1207|consen 145 ---------DNHTVYCATKAALDMLTKCLALEL-GPQKIRVNSVNPTVVMTDMGRDNWSDPDKKKKMLDRIPLKRF 210 (245)
T ss_pred ---------CCceEEeecHHHHHHHHHHHHHhh-CcceeEeeccCCeEEEecccccccCCchhccchhhhCchhhh
Confidence 788999999999999999999999 89999999999999999999863 4444556678898887
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=263.81 Aligned_cols=201 Identities=31% Similarity=0.481 Sum_probs=177.9
Q ss_pred CCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc-CC
Q 022369 72 GST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL-GP 148 (298)
Q Consensus 72 Gas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~-g~ 148 (298)
|++ +|||+++|++|+++|++|++++|+.++++...+++.+..+ .+ ++++|++++++++++++++.+.+ |+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~-----~~--~~~~D~~~~~~v~~~~~~~~~~~~g~ 73 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYG-----AE--VIQCDLSDEESVEALFDEAVERFGGR 73 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTT-----SE--EEESCTTSHHHHHHHHHHHHHHHCSS
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcC-----Cc--eEeecCcchHHHHHHHHHHHhhcCCC
Confidence 566 9999999999999999999999999998888888777543 13 59999999999999999999999 99
Q ss_pred ccEEEEccCCCCC----CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 149 LHVLINNAGIFSI----GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 149 idilVnnag~~~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
||+||||+|.... .++.+.+.++|++.+++|+.+++.++|+++|+|.++ |+||++||..+..+.
T Consensus 74 iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--gsii~iss~~~~~~~---------- 141 (241)
T PF13561_consen 74 IDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKG--GSIINISSIAAQRPM---------- 141 (241)
T ss_dssp ESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHE--EEEEEEEEGGGTSBS----------
T ss_pred eEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCcccccchhhcccC----------
Confidence 9999999998765 677889999999999999999999999999988774 799999998755443
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCC-CCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-CCCC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAE-SGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~-~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~pe~ 297 (298)
+.+..|+++|+|+.+|+++|+.|+ .+ +|||||+|+||+++|++.+.. ++..+...+.+|++++ +|||
T Consensus 142 -----~~~~~y~~sKaal~~l~r~lA~el-~~~~gIrVN~V~pG~i~t~~~~~~~~~~~~~~~~~~~~pl~r~~~~~e 213 (241)
T PF13561_consen 142 -----PGYSAYSASKAALEGLTRSLAKEL-APKKGIRVNAVSPGPIETPMTERIPGNEEFLEELKKRIPLGRLGTPEE 213 (241)
T ss_dssp -----TTTHHHHHHHHHHHHHHHHHHHHH-GGHGTEEEEEEEESSBSSHHHHHHHTHHHHHHHHHHHSTTSSHBEHHH
T ss_pred -----ccchhhHHHHHHHHHHHHHHHHHh-ccccCeeeeeecccceeccchhccccccchhhhhhhhhccCCCcCHHH
Confidence 788899999999999999999999 88 999999999999999997654 4555667779999996 7765
|
... |
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=256.94 Aligned_cols=217 Identities=24% Similarity=0.320 Sum_probs=186.9
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
++.++++|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++++. +.++.++.+|+++++++.++
T Consensus 5 ~~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~ 78 (256)
T PRK06124 5 QRFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAA------GGAAEALAFDIADEEAVAAA 78 (256)
T ss_pred cccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHH
Confidence 355688999999999999999999999999999999999998888887777542 23688999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++++.+.+|++|++|||+|.....++.+.+.++|++.+++|+.+++.+++.+++.|.+++.|+||++||..+..+.
T Consensus 79 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~---- 154 (256)
T PRK06124 79 FARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVAR---- 154 (256)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCC----
Confidence 9999999999999999999877777888999999999999999999999999999998888999999998765554
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-C
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~ 294 (298)
++...|+++|+++.++++.++.|+ .+.||+|++|+||+++|++.+.. ++..+.+....|+.++ +
T Consensus 155 -----------~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (256)
T PRK06124 155 -----------AGDAVYPAAKQGLTGLMRALAAEF-GPHGITSNAIAPGYFATETNAAMAADPAVGPWLAQRTPLGRWGR 222 (256)
T ss_pred -----------CCccHhHHHHHHHHHHHHHHHHHH-HHhCcEEEEEEECCccCcchhhhccChHHHHHHHhcCCCCCCCC
Confidence 677889999999999999999999 77899999999999999986542 2222333345566555 5
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|+|
T Consensus 223 ~~~ 225 (256)
T PRK06124 223 PEE 225 (256)
T ss_pred HHH
Confidence 543
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=261.18 Aligned_cols=196 Identities=25% Similarity=0.312 Sum_probs=172.7
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
..+..++++|++|||||++|||+++|++|+++|++|++++|+.+..++..+++.. +.++.++++|++|+++++
T Consensus 10 ~~~~~~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~d~~~~~ 82 (280)
T PLN02253 10 SLPSQRLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGG-------EPNVCFFHCDVTVEDDVS 82 (280)
T ss_pred cccccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcC-------CCceEEEEeecCCHHHHH
Confidence 3445567899999999999999999999999999999999998777766555421 136889999999999999
Q ss_pred HHHHHHhcccCCccEEEEccCCCCC--CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSI--GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~ 214 (298)
++++++.+.+|++|+||||||.... .++.+.+.++|++.+++|+.|+++++++++|.|.+++.|+||+++|..+..+.
T Consensus 83 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~ 162 (280)
T PLN02253 83 RAVDFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGG 162 (280)
T ss_pred HHHHHHHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccC
Confidence 9999999999999999999998642 35778899999999999999999999999999988778999999998866554
Q ss_pred CCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|++||+|+++++++++.|+ .++||+|++++||.++|++..
T Consensus 163 ---------------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~pg~v~t~~~~ 207 (280)
T PLN02253 163 ---------------LGPHAYTGSKHAVLGLTRSVAAEL-GKHGIRVNCVSPYAVPTALAL 207 (280)
T ss_pred ---------------CCCcccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcccccccc
Confidence 556679999999999999999999 788999999999999999854
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=258.13 Aligned_cols=190 Identities=27% Similarity=0.359 Sum_probs=171.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.+++|++|||||++|||.++|++|+++|++|++++|+.++++++.+++. .++.++++|++|++++++++++
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~ 73 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIG---------PAAIAVSLDVTRQDSIDRIVAA 73 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhC---------CceEEEEccCCCHHHHHHHHHH
Confidence 4678999999999999999999999999999999999888877665542 2588899999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+.++++|++|||||.....++.+.+.+++++.+++|+.+++.+++++++.|.+++ +|+||++||..+..+.
T Consensus 74 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 147 (257)
T PRK07067 74 AVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGE------ 147 (257)
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCC------
Confidence 999999999999999987777788889999999999999999999999999998764 5899999998755544
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
++...|++||+++.+|+++++.|+ .++||+|++|+||+++|++.+.
T Consensus 148 ---------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~pg~v~t~~~~~ 193 (257)
T PRK07067 148 ---------ALVSHYCATKAAVISYTQSAALAL-IRHGINVNAIAPGVVDTPMWDQ 193 (257)
T ss_pred ---------CCCchhhhhHHHHHHHHHHHHHHh-cccCeEEEEEeeCcccchhhhh
Confidence 677889999999999999999999 7889999999999999998654
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=261.68 Aligned_cols=185 Identities=24% Similarity=0.330 Sum_probs=167.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+|++|||||++|||+++|++|+++|++|++++|+.++++++. + ..+.++.+|++|+++++++++++.
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~----~--------~~~~~~~~Dl~d~~~~~~~~~~~~ 70 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALE----A--------EGLEAFQLDYAEPESIAALVAQVL 70 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH----H--------CCceEEEccCCCHHHHHHHHHHHH
Confidence 3689999999999999999999999999999999988776543 1 136788999999999999999987
Q ss_pred ccc-CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 144 GRL-GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 144 ~~~-g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
+.+ |++|++|||||+...+++.+.+.+++++.+++|+.|++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 71 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~-------- 142 (277)
T PRK05993 71 ELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLVPM-------- 142 (277)
T ss_pred HHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcCCC--------
Confidence 765 68999999999988888888999999999999999999999999999999888999999998766554
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|++||+++++|+++|+.|+ .++||+|++|+||+++|++.++
T Consensus 143 -------~~~~~Y~asK~a~~~~~~~l~~el-~~~gi~v~~v~Pg~v~T~~~~~ 188 (277)
T PRK05993 143 -------KYRGAYNASKFAIEGLSLTLRMEL-QGSGIHVSLIEPGPIETRFRAN 188 (277)
T ss_pred -------CccchHHHHHHHHHHHHHHHHHHh-hhhCCEEEEEecCCccCchhhH
Confidence 677889999999999999999999 8899999999999999998764
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=261.08 Aligned_cols=199 Identities=25% Similarity=0.275 Sum_probs=173.6
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
+.+..++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++++|++|++++.
T Consensus 32 ~~~~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~------~~~~~~~~~Dl~d~~~v~ 105 (293)
T PRK05866 32 PRQPVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRA------GGDAMAVPCDLSDLDAVD 105 (293)
T ss_pred CCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHH
Confidence 33455778999999999999999999999999999999999999988887777542 236789999999999999
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCcc--ChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKF--SKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~--~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~ 214 (298)
++++++.+.+|++|++|||||+....++.+. +.++++..+++|+.|++.++++++|.|++++.|+||++||.++...
T Consensus 106 ~~~~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~- 184 (293)
T PRK05866 106 ALVADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSE- 184 (293)
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCC-
Confidence 9999999999999999999998766555443 4578899999999999999999999999988899999999754321
Q ss_pred CCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+.+....|++||+|+.+|+++++.|+ .++||+|++|+||+|+|++.+.
T Consensus 185 -------------~~p~~~~Y~asKaal~~l~~~la~e~-~~~gI~v~~v~pg~v~T~~~~~ 232 (293)
T PRK05866 185 -------------ASPLFSVYNASKAALSAVSRVIETEW-GDRGVHSTTLYYPLVATPMIAP 232 (293)
T ss_pred -------------CCCCcchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEEcCcccCccccc
Confidence 12567789999999999999999999 7889999999999999999753
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=259.90 Aligned_cols=184 Identities=30% Similarity=0.404 Sum_probs=166.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++|+++||||++|||+++|++|+++|++|++++|+.++++++.+ ..+.++.+|++|+++++++++++.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~------------~~~~~~~~Dv~~~~~~~~~~~~~~ 69 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS------------LGVHPLSLDVTDEASIKAAVDTII 69 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh------------CCCeEEEeeCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999877655421 146789999999999999999999
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+.++++|+||||||+...+++.+.+.+++++.+++|+.+++.+++.++|.|++++.|+||++||..+..+.
T Consensus 70 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~--------- 140 (273)
T PRK06182 70 AEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIYT--------- 140 (273)
T ss_pred HhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCCC---------
Confidence 99999999999999988788889999999999999999999999999999999888999999998765543
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|++||+++++|+++++.|+ .++||+|++|+||+++|++..
T Consensus 141 ------~~~~~Y~~sKaa~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~ 185 (273)
T PRK06182 141 ------PLGAWYHATKFALEGFSDALRLEV-APFGIDVVVIEPGGIKTEWGD 185 (273)
T ss_pred ------CCccHhHHHHHHHHHHHHHHHHHh-cccCCEEEEEecCCcccccch
Confidence 566779999999999999999999 788999999999999999853
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=284.91 Aligned_cols=196 Identities=30% Similarity=0.371 Sum_probs=178.9
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
....++++++|||||++|||+++|++|+++|++|++++|+.++++++.++++.. +.++.++++|++|++++.++
T Consensus 309 ~~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~~~~~ 382 (582)
T PRK05855 309 PRGPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAA------GAVAHAYRVDVSDADAMEAF 382 (582)
T ss_pred ccccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCHHHHHHH
Confidence 345667899999999999999999999999999999999999998888777542 23688999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~ 217 (298)
++++.+.+|++|+||||||+...+++.+.+.+++++.+++|+.|+++++++++|.|.+++ +|+||++||.+++.+.
T Consensus 383 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~--- 459 (582)
T PRK05855 383 AEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYAPS--- 459 (582)
T ss_pred HHHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccCC---
Confidence 999999999999999999998878888999999999999999999999999999999876 5899999999877665
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
++...|++||+|+++|+++|+.|+ .++||+|++|+||+|+|+|.+.
T Consensus 460 ------------~~~~~Y~~sKaa~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~ 505 (582)
T PRK05855 460 ------------RSLPAYATSKAAVLMLSECLRAEL-AAAGIGVTAICPGFVDTNIVAT 505 (582)
T ss_pred ------------CCCcHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEEeCCCcccchhc
Confidence 677889999999999999999999 7889999999999999998765
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=255.87 Aligned_cols=212 Identities=25% Similarity=0.350 Sum_probs=179.6
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||.++|++|+++|++|++++|+.+.. +...++. +.++.++.+|++++++++++++
T Consensus 11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~-~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~ 81 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA-EVAAQLL--------GGNAKGLVCDVSDSQSVEAAVA 81 (255)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHHhh--------CCceEEEEecCCCHHHHHHHHH
Confidence 457899999999999999999999999999999999987642 2222221 1357789999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.++++|++|||||.....++.+.+.+++++.+++|+.++++++++++|.|.+++.|+||++||..+..+.
T Consensus 82 ~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 155 (255)
T PRK06841 82 AVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVAL------ 155 (255)
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCC------
Confidence 99999999999999999887777778899999999999999999999999999998888999999998766554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc--hHHHHHHHHhhhhccc-CCCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~--~~~~~~~~~~~p~~~~-~pe~ 297 (298)
+....|+++|+++.+++++++.|+ .++||+|++|+||+|+|++.+.. .+..+......|..++ +|||
T Consensus 156 ---------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (255)
T PRK06841 156 ---------ERHVAYCASKAGVVGMTKVLALEW-GPYGITVNAISPTVVLTELGKKAWAGEKGERAKKLIPAGRFAYPEE 225 (255)
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHHH-HhhCeEEEEEEeCcCcCcccccccchhHHHHHHhcCCCCCCcCHHH
Confidence 667789999999999999999999 77899999999999999987643 1222334456677666 5554
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=252.43 Aligned_cols=204 Identities=21% Similarity=0.244 Sum_probs=168.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|++|||||++|||+++|++|+++|++|++++|+.+... +++... .+.++.+|++|+++++++++++.+
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~--------~~~~~~~D~~~~~~~~~~~~~~~~ 70 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAI---DGLRQA--------GAQCIQADFSTNAGIMAFIDELKQ 70 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHH---HHHHHc--------CCEEEEcCCCCHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999876542 223221 256789999999999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC--CCeEEEEcCCccccCCCCcccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS--PSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~--~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.++++|++|||||......+.+.+.++|++.+++|+.+++.+++.++|.|.+++ .|+||++||..+..+.
T Consensus 71 ~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~-------- 142 (236)
T PRK06483 71 HTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGS-------- 142 (236)
T ss_pred hCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCC--------
Confidence 999999999999986555566778999999999999999999999999998866 6899999998754443
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHHhhhhccc-CCCC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~~~-~pe~ 297 (298)
+....|++||+++++|+++++.|+ .+ +||||+|+||++.|+... .++..+......|+.++ +|||
T Consensus 143 -------~~~~~Y~asKaal~~l~~~~a~e~-~~-~irvn~v~Pg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 208 (236)
T PRK06483 143 -------DKHIAYAASKAALDNMTLSFAAKL-AP-EVKVNSIAPALILFNEGD-DAAYRQKALAKSLLKIEPGEEE 208 (236)
T ss_pred -------CCCccHHHHHHHHHHHHHHHHHHH-CC-CcEEEEEccCceecCCCC-CHHHHHHHhccCccccCCCHHH
Confidence 677889999999999999999999 65 599999999999886532 22222333445566665 5654
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=254.51 Aligned_cols=191 Identities=25% Similarity=0.276 Sum_probs=167.7
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
|.++++||+++||||++|||+++|++|+++|++|++++|+.++.++..+++ +.++.++++|+++.++++++
T Consensus 4 ~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~Dl~~~~~~~~~ 74 (255)
T PRK05717 4 PNPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL---------GENAWFIAMDVADEAQVAAG 74 (255)
T ss_pred CCcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc---------CCceEEEEccCCCHHHHHHH
Confidence 456788999999999999999999999999999999999987766654432 12678999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCC--CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSI--GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
++++.+++|++|++|||||+... .++.+.+.++|++.+++|+.+++.++++++|+|.++ .|+||++||..+..+.
T Consensus 75 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~g~ii~~sS~~~~~~~-- 151 (255)
T PRK05717 75 VAEVLGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAH-NGAIVNLASTRARQSE-- 151 (255)
T ss_pred HHHHHHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CcEEEEEcchhhcCCC--
Confidence 99999999999999999998643 456788999999999999999999999999999765 4899999998866554
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++.+++++++.|+ .. +|+|++|+||.++|++...
T Consensus 152 -------------~~~~~Y~~sKaa~~~~~~~la~~~-~~-~i~v~~i~Pg~i~t~~~~~ 196 (255)
T PRK05717 152 -------------PDTEAYAASKGGLLALTHALAISL-GP-EIRVNAVSPGWIDARDPSQ 196 (255)
T ss_pred -------------CCCcchHHHHHHHHHHHHHHHHHh-cC-CCEEEEEecccCcCCcccc
Confidence 566789999999999999999999 54 5999999999999998643
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=254.52 Aligned_cols=211 Identities=25% Similarity=0.291 Sum_probs=177.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+|++|||||++|||.++|++|+++|++|+++++ +.+.++++.+++... +.++.++.+|++++++++++++++.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSH------GVRAEIRQLDLSDLPEGAQALDKLI 75 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHHHHHH
Confidence 589999999999999999999999999998865 556677766666542 2478899999999999999999999
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
+.++++|++|||||.....++.+.+.++|++.+++|+.+++.++++++++|.+++ +|+||++||..+..+.
T Consensus 76 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~-------- 147 (256)
T PRK12743 76 QRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPL-------- 147 (256)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCCC--------
Confidence 9999999999999987766777889999999999999999999999999997653 5899999998654443
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH-HHHHHHHhhhhccc-CCCC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK-IVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~-~~~~~~~~~p~~~~-~pe~ 297 (298)
++...|+++|+++.+++++++.|+ .++||+|++|+||+++|++.+..+. ........+|+.++ +|||
T Consensus 148 -------~~~~~Y~~sK~a~~~l~~~la~~~-~~~~i~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~d 216 (256)
T PRK12743 148 -------PGASAYTAAKHALGGLTKAMALEL-VEHGILVNAVAPGAIATPMNGMDDSDVKPDSRPGIPLGRPGDTHE 216 (256)
T ss_pred -------CCcchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEeCCccCccccccChHHHHHHHhcCCCCCCCCHHH
Confidence 677889999999999999999999 7889999999999999999765432 22233345666655 5543
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=257.71 Aligned_cols=183 Identities=26% Similarity=0.330 Sum_probs=162.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.++.+. .++.++++|++|+++++++++
T Consensus 5 ~~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~~---------------~~~~~~~~D~~~~~~~~~~~~ 69 (266)
T PRK06171 5 LNLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQH---------------ENYQFVPTDVSSAEEVNHTVA 69 (266)
T ss_pred ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccccc---------------CceEEEEccCCCHHHHHHHHH
Confidence 35788999999999999999999999999999999998765321 257889999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCC---------CCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIG---------EPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY 211 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~---------~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~ 211 (298)
++.+.+|++|++|||||..... ++.+.+.++|++.+++|+.++++++++++++|++++.|+||++||..+.
T Consensus 70 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 149 (266)
T PRK06171 70 EIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGL 149 (266)
T ss_pred HHHHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEcccccc
Confidence 9999999999999999975432 2346789999999999999999999999999998888999999999876
Q ss_pred cCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccc-cCcc
Q 022369 212 VGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVS-TNVA 274 (298)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~-T~~~ 274 (298)
.+. +....|+++|+++.+|+++++.|+ .++||+||+|+||+++ |++.
T Consensus 150 ~~~---------------~~~~~Y~~sK~a~~~l~~~la~e~-~~~gi~v~~v~pG~~~~t~~~ 197 (266)
T PRK06171 150 EGS---------------EGQSCYAATKAALNSFTRSWAKEL-GKHNIRVVGVAPGILEATGLR 197 (266)
T ss_pred CCC---------------CCCchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeccccccCCCc
Confidence 554 667889999999999999999999 8889999999999997 6664
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=254.24 Aligned_cols=205 Identities=25% Similarity=0.269 Sum_probs=174.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++ . . .+..+.++++|+++++++++++++
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~------~--~------~~~~~~~~~~D~~~~~~~~~~~~~ 68 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE------T--V------DGRPAEFHAADVRDPDQVAALVDA 68 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh------h--h------cCCceEEEEccCCCHHHHHHHHHH
Confidence 5679999999999999999999999999999999998764 0 0 013688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+.++++|++|||||+....++.+.+.++|++.+++|+.+++.+++.++|.|.++ +.|+||++||..+..+.
T Consensus 69 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~------ 142 (252)
T PRK07856 69 IVERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPS------ 142 (252)
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCC------
Confidence 99999999999999998776777888999999999999999999999999999875 45899999998765544
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~pe 296 (298)
+....|+++|+++++|+++++.|+ .++ |+|++|+||+|+|++.... ++..+......|+.++ +||
T Consensus 143 ---------~~~~~Y~~sK~a~~~l~~~la~e~-~~~-i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 211 (252)
T PRK07856 143 ---------PGTAAYGAAKAGLLNLTRSLAVEW-APK-VRVNAVVVGLVRTEQSELHYGDAEGIAAVAATVPLGRLATPA 211 (252)
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHh-cCC-eEEEEEEeccccChHHhhhccCHHHHHHHhhcCCCCCCcCHH
Confidence 677889999999999999999999 666 9999999999999986532 2223334456677666 665
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 212 ~ 212 (252)
T PRK07856 212 D 212 (252)
T ss_pred H
Confidence 4
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=254.77 Aligned_cols=188 Identities=23% Similarity=0.340 Sum_probs=167.2
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
++++|||||++|||.++|++|+++|++|++++|+.+++++..+++.. . .++.++.+|++|+++++++++++.+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~----~---~~~~~~~~Dl~~~~~i~~~~~~~~~ 74 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPK----A---ARVSVYAADVRDADALAAAAADFIA 74 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccc----C---CeeEEEEcCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999998887776655432 1 1688999999999999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCC-ccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQ-KFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~-~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
++|.+|++|||||+....... +.+.+++++.+++|+.|++.+++.++|.|++++.|+||++||.+++.+.
T Consensus 75 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~--------- 145 (257)
T PRK07024 75 AHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGL--------- 145 (257)
T ss_pred hCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCC---------
Confidence 999999999999986543333 3788999999999999999999999999999888999999999876654
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|++||++++.|+++++.|+ .++||+|++|+||+|+|++..
T Consensus 146 ------~~~~~Y~asK~a~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~ 190 (257)
T PRK07024 146 ------PGAGAYSASKAAAIKYLESLRVEL-RPAGVRVVTIAPGYIRTPMTA 190 (257)
T ss_pred ------CCCcchHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCCCcCchhh
Confidence 677889999999999999999999 778999999999999999764
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=255.01 Aligned_cols=214 Identities=24% Similarity=0.339 Sum_probs=179.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++.+|++|||||++|||+++|++|+++|++|++++|+.+ .++..+++... +.++.++++|+++++++++++++
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~------~~~~~~~~~Dl~~~~~v~~~~~~ 75 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCGR------GHRCTAVVADVRDPASVAAAIKR 75 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHHh------CCceEEEECCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999864 44444444331 23678899999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+.++++|++|||||.....++.+.+.+++++.+++|+.+++.+++.++|.|.+++.++||++||..+...
T Consensus 76 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~-------- 147 (263)
T PRK08226 76 AKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMV-------- 147 (263)
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccc--------
Confidence 999999999999999998777888889999999999999999999999999998877889999999765221
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---------HHHHHHHHhhhhcc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---------KIVQAAYHLIPYFI 292 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---------~~~~~~~~~~p~~~ 292 (298)
+.+....|+++|+++++++++++.|+ .+.||+|++|+||+++|++.+... +.........|+.+
T Consensus 148 ------~~~~~~~Y~~sK~a~~~~~~~la~~~-~~~~i~v~~i~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 220 (263)
T PRK08226 148 ------ADPGETAYALTKAAIVGLTKSLAVEY-AQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPLRR 220 (263)
T ss_pred ------CCCCcchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCcccCHHHHhhhhhccCCCcHHHHHHHhccCCCCC
Confidence 12566789999999999999999999 778999999999999999875431 12233334567766
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 221 ~~~~~~ 226 (263)
T PRK08226 221 LADPLE 226 (263)
T ss_pred CCCHHH
Confidence 6 6654
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=260.70 Aligned_cols=202 Identities=31% Similarity=0.486 Sum_probs=166.1
Q ss_pred EEeCCCCchHHHHHHHHHHcC-CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccC
Q 022369 69 IVTGSTSGIGREIARQLAESG-AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLG 147 (298)
Q Consensus 69 lITGas~GIG~~~a~~la~~G-~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g 147 (298)
|||||++|||+++|++|+++| ++|++++|+.++++++.+++... +.++.++++|++|.++++++++++.+.++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 74 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMP------KDSYTVMHLDLASLDSVRQFVDNFRRSGR 74 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCC------CCeEEEEEecCCCHHHHHHHHHHHHhcCC
Confidence 699999999999999999999 99999999988888777665321 23688899999999999999999998889
Q ss_pred CccEEEEccCCCCC-CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC--CCeEEEEcCCccccCCC--------C
Q 022369 148 PLHVLINNAGIFSI-GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS--PSRIINVNSVMHYVGFV--------D 216 (298)
Q Consensus 148 ~idilVnnag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~--~g~Iv~isS~~~~~~~~--------~ 216 (298)
++|+||||||+... .+..+.+.++|++.+++|+.|++.+++.++|.|++++ +|+||++||..+..+.. .
T Consensus 75 ~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~ 154 (308)
T PLN00015 75 PLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGNTNTLAGNVPPKAN 154 (308)
T ss_pred CCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccCCCccc
Confidence 99999999998643 3566789999999999999999999999999998876 68999999998754211 0
Q ss_pred ccccc-------------ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcc-ccCccCCc
Q 022369 217 TEDMN-------------VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIV-STNVARDL 277 (298)
Q Consensus 217 ~~~~~-------------~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v-~T~~~~~~ 277 (298)
..+.. +.. ...+++...|++||+|+..+++.+++|+....||+|++|+||+| .|+|.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~ 228 (308)
T PLN00015 155 LGDLRGLAGGLNGLNSSAMID-GGEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREH 228 (308)
T ss_pred hhhhhhhhcccCCccchhhcc-ccCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCccccccc
Confidence 00000 011 12345677899999999999999999993336999999999999 79997654
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=251.35 Aligned_cols=212 Identities=24% Similarity=0.327 Sum_probs=178.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEE-EcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++|+++||||++|||+++|++|+++|++|++. +++....++..+++... +.++..+.+|++|.+++++++++
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 74 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKAL------GFDFIASEGNVGDWDSTKAAFDK 74 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHH
Confidence 357999999999999999999999999998885 45555555555555432 24688889999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+.++++|+||||||.....++.+.+.++|++.+++|+.+++.+++.++|.|.+++.|+||++||..+..+.
T Consensus 75 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------- 147 (246)
T PRK12938 75 VKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQ------- 147 (246)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCCC-------
Confidence 9999999999999999876667888899999999999999999999999999998888999999998765554
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-hHHHHHHHHhhhhccc-CCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-PKIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-~~~~~~~~~~~p~~~~-~pe 296 (298)
++...|+++|+++.+|+++++.|+ ...||++++|+||++.|++.+.. ++..+......|..++ +|+
T Consensus 148 --------~~~~~y~~sK~a~~~~~~~l~~~~-~~~gi~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (246)
T PRK12938 148 --------FGQTNYSTAKAGIHGFTMSLAQEV-ATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATIPVRRLGSPD 215 (246)
T ss_pred --------CCChhHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEecccCCchhhhcChHHHHHHHhcCCccCCcCHH
Confidence 677789999999999999999999 78899999999999999998764 3333333344565555 444
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=255.56 Aligned_cols=186 Identities=28% Similarity=0.412 Sum_probs=164.4
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||.++|++|+++|++|++++|+.+.. . +.++.++++|++|+++++++++
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~------~---------~~~~~~~~~D~~~~~~~~~~~~ 69 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD------L---------PEGVEFVAADLTTAEGCAAVAR 69 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh------c---------CCceeEEecCCCCHHHHHHHHH
Confidence 467899999999999999999999999999999999986431 0 1257889999999999999999
Q ss_pred HHhcccCCccEEEEccCCCC--CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 141 AWNGRLGPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++.+.++++|++|||||... ..++.+.+.++|++.+++|+.+++.+++.++|+|++++.|+||++||..+..+..
T Consensus 70 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~--- 146 (260)
T PRK06523 70 AVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPLP--- 146 (260)
T ss_pred HHHHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCCC---
Confidence 99999999999999999753 3456778999999999999999999999999999988889999999987654420
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++.+|+++++.|+ .++||+|++|+||.|+|++...
T Consensus 147 -----------~~~~~Y~~sK~a~~~l~~~~a~~~-~~~gi~v~~i~Pg~v~t~~~~~ 192 (260)
T PRK06523 147 -----------ESTTAYAAAKAALSTYSKSLSKEV-APKGVRVNTVSPGWIETEAAVA 192 (260)
T ss_pred -----------CCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCcccCccHHH
Confidence 256789999999999999999999 7889999999999999998653
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=258.21 Aligned_cols=208 Identities=29% Similarity=0.445 Sum_probs=169.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcC-CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESG-AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G-~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.+|++|||||++|||+++|++|+++| ++|++++|+.++++++.+++.. .+..+.++.+|+++.++++++++++
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~------~~~~~~~~~~Dl~~~~~v~~~~~~~ 75 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGM------PKDSYTIMHLDLGSLDSVRQFVQQF 75 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcC------CCCeEEEEEcCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999 9999999999888877766532 1236788999999999999999999
Q ss_pred hcccCCccEEEEccCCCCC-CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC--CCeEEEEcCCccccCCC----
Q 022369 143 NGRLGPLHVLINNAGIFSI-GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS--PSRIINVNSVMHYVGFV---- 215 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~--~g~Iv~isS~~~~~~~~---- 215 (298)
.+.++++|+||||||+... .+..+.+.++|++++++|+.|++.+++.++|.|++++ .|+||++||.++..+..
T Consensus 76 ~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~ 155 (314)
T TIGR01289 76 RESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNV 155 (314)
T ss_pred HHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcC
Confidence 9888999999999998542 2334678899999999999999999999999998764 58999999998764321
Q ss_pred ----Cccccccc----------ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcc-ccCccCCc
Q 022369 216 ----DTEDMNVV----------SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIV-STNVARDL 277 (298)
Q Consensus 216 ----~~~~~~~~----------~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v-~T~~~~~~ 277 (298)
+..+.... ....++.+...|++||+|+..+++.|++++..+.||+|++|+||.| .|+|.++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~T~l~~~~ 232 (314)
T TIGR01289 156 PPKANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIADTGLFREH 232 (314)
T ss_pred CCcccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCcccCCcccccc
Confidence 11111100 0123445677899999999999999999984346899999999999 69997653
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=280.52 Aligned_cols=189 Identities=26% Similarity=0.364 Sum_probs=170.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .++.++++|++++++++++++++
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~ 73 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLG---------PDHHALAMDVSDEAQIREGFEQL 73 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CceeEEEeccCCHHHHHHHHHHH
Confidence 468999999999999999999999999999999999888877665541 36788999999999999999999
Q ss_pred hcccCCccEEEEccCCCC--CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCC-eEEEEcCCccccCCCCccc
Q 022369 143 NGRLGPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPS-RIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g-~Iv~isS~~~~~~~~~~~~ 219 (298)
.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.+++.++++++|+|++++.| +||++||..+..+.
T Consensus 74 ~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~----- 148 (520)
T PRK06484 74 HREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVAL----- 148 (520)
T ss_pred HHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCC-----
Confidence 999999999999999843 3467788999999999999999999999999999886655 99999999876654
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++.+|+++|+.|+ .++||+|++|+||+|+|++...
T Consensus 149 ----------~~~~~Y~asKaal~~l~~~la~e~-~~~~i~v~~i~Pg~v~t~~~~~ 194 (520)
T PRK06484 149 ----------PKRTAYSASKAAVISLTRSLACEW-AAKGIRVNAVLPGYVRTQMVAE 194 (520)
T ss_pred ----------CCCchHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEccCCcCchhhhh
Confidence 677889999999999999999999 8889999999999999999754
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=252.10 Aligned_cols=212 Identities=20% Similarity=0.308 Sum_probs=181.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||.++|++|+++|++|++++|+.++++++.+++... +.++.++.+|+++++++.+++++
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~ 80 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA------GRRAHVVAADLAHPEATAGLAGQ 80 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHH
Confidence 577899999999999999999999999999999999998888887776542 23688899999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhc-CCCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR-GSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~-~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+.++++|++|||||.....++.+.+.+++++.+++|+.+++.+++++.|+|.+ ++.|+||++||..+..+.
T Consensus 81 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------ 154 (263)
T PRK07814 81 AVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLAG------ 154 (263)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCCC------
Confidence 9999999999999999876677788899999999999999999999999999987 567899999998766554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~pe 296 (298)
++...|+++|+++.+++++++.|+ .+ +|+|++|+||++.|++.... .+..+......|..++ +||
T Consensus 155 ---------~~~~~Y~~sK~a~~~~~~~~~~e~-~~-~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (263)
T PRK07814 155 ---------RGFAAYGTAKAALAHYTRLAALDL-CP-RIRVNAIAPGSILTSALEVVAANDELRAPMEKATPLRRLGDPE 223 (263)
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHH-CC-CceEEEEEeCCCcCchhhhccCCHHHHHHHHhcCCCCCCcCHH
Confidence 677889999999999999999999 65 69999999999999986532 2233333344555544 444
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=259.75 Aligned_cols=202 Identities=34% Similarity=0.508 Sum_probs=172.2
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .+.++++|++|.++++++++
T Consensus 22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~----------~v~~~~~Dl~d~~~v~~~~~ 91 (315)
T PRK06196 22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID----------GVEVVMLDLADLESVRAFAE 91 (315)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh----------hCeEEEccCCCHHHHHHHHH
Confidence 35678999999999999999999999999999999999888877766552 36788999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.++++|+||||||+... ..+.+.++|+..+++|+.|++.+++.++|.|.+++.++||++||..+..+.....+.
T Consensus 92 ~~~~~~~~iD~li~nAg~~~~--~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~ 169 (315)
T PRK06196 92 RFLDSGRRIDILINNAGVMAC--PETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIRWDDP 169 (315)
T ss_pred HHHhcCCCCCEEEECCCCCCC--CCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCCcccc
Confidence 999999999999999998542 345677899999999999999999999999998877899999998665433222221
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~ 278 (298)
. ...+++....|++||+++..|++.++.++ .++||+|++|+||+|.|++.+..+
T Consensus 170 ~---~~~~~~~~~~Y~~SK~a~~~~~~~la~~~-~~~gi~v~~v~PG~v~t~~~~~~~ 223 (315)
T PRK06196 170 H---FTRGYDKWLAYGQSKTANALFAVHLDKLG-KDQGVRAFSVHPGGILTPLQRHLP 223 (315)
T ss_pred C---ccCCCChHHHHHHHHHHHHHHHHHHHHHh-cCCCcEEEEeeCCcccCCccccCC
Confidence 1 13445667789999999999999999999 778999999999999999987654
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=249.59 Aligned_cols=208 Identities=24% Similarity=0.312 Sum_probs=178.3
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcC-chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRN-LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
++||||++|||+++|++|+++|++|++++|+ .++++...+++++. +.++.++++|++|.++++++++++.+.+
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 74 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQ------GGNARLLQFDVADRVACRTLLEADIAEH 74 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc------CCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5899999999999999999999999999875 45666666666542 2378999999999999999999999999
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHh-hhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLF-PSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l-p~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
+++|++|||+|+....++.+.+.++|+..+++|+.++++++++++ |.+.+++.|+||++||..+..+.
T Consensus 75 ~~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~----------- 143 (239)
T TIGR01831 75 GAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGN----------- 143 (239)
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCC-----------
Confidence 999999999998777777788999999999999999999999875 55555677899999998876665
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHHhhhhccc-CCCC
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~~~-~pe~ 297 (298)
+....|+++|+++.+++++++.|+ .++||+|++|+||+++|++.+..++..+......|+.++ +|||
T Consensus 144 ----~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (239)
T TIGR01831 144 ----RGQVNYSAAKAGLIGATKALAVEL-AKRKITVNCIAPGLIDTEMLAEVEHDLDEALKTVPMNRMGQPAE 211 (239)
T ss_pred ----CCCcchHHHHHHHHHHHHHHHHHH-hHhCeEEEEEEEccCccccchhhhHHHHHHHhcCCCCCCCCHHH
Confidence 667789999999999999999999 778999999999999999988766555555567788777 6664
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=257.93 Aligned_cols=193 Identities=22% Similarity=0.261 Sum_probs=170.0
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC-chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN-LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
..+++||++|||||++|||+++|++|+++|++|++++++ .+..++..+++... +.++.++++|++|+++++++
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~------g~~~~~~~~Dv~d~~~~~~~ 80 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAA------GAKAVAVAGDISQRATADEL 80 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhc------CCeEEEEeCCCCCHHHHHHH
Confidence 457889999999999999999999999999999999985 45666777776542 24788999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-------CCeEEEEcCCccc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-------PSRIINVNSVMHY 211 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-------~g~Iv~isS~~~~ 211 (298)
++++.+ +|++|+||||||+.....+.+.+.++|++.+++|+.++++++++++|+|+++. .|+||++||.++.
T Consensus 81 ~~~~~~-~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 159 (306)
T PRK07792 81 VATAVG-LGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGL 159 (306)
T ss_pred HHHHHH-hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccc
Confidence 999998 99999999999998777788899999999999999999999999999997531 3799999998876
Q ss_pred cCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 212 VGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
.+. +....|+++|+++.+|+++++.|+ .++||+||+|+|| +.|+|...
T Consensus 160 ~~~---------------~~~~~Y~asKaal~~l~~~la~e~-~~~gI~vn~i~Pg-~~t~~~~~ 207 (306)
T PRK07792 160 VGP---------------VGQANYGAAKAGITALTLSAARAL-GRYGVRANAICPR-ARTAMTAD 207 (306)
T ss_pred cCC---------------CCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEECCC-CCCchhhh
Confidence 654 667789999999999999999999 8899999999999 48888653
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=250.92 Aligned_cols=192 Identities=26% Similarity=0.317 Sum_probs=170.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|++|||||++|||.++|++|+++|++|++++|+.++++...+++..... ..++.++.+|++++++++++++++.+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~i~~~~~~~~~ 77 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYG----EGMAYGFGADATSEQSVLALSRGVDE 77 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC----CceeEEEEccCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999888887777655321 13688999999999999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
.++++|++|||||.....++.+.+.++|++.+++|+.+++++++++++.|.+++ .|+||++||..+..+.
T Consensus 78 ~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~--------- 148 (259)
T PRK12384 78 IFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGS--------- 148 (259)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCC---------
Confidence 999999999999988777788899999999999999999999999999998876 6899999998765543
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcc-ccCccCC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIV-STNVARD 276 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v-~T~~~~~ 276 (298)
+....|++||+|+.+++++++.|+ .++||+|++|+||.+ .|++...
T Consensus 149 ------~~~~~Y~~sKaa~~~l~~~la~e~-~~~gi~v~~v~pg~~~~~~~~~~ 195 (259)
T PRK12384 149 ------KHNSGYSAAKFGGVGLTQSLALDL-AEYGITVHSLMLGNLLKSPMFQS 195 (259)
T ss_pred ------CCCchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEecCCcccchhhhh
Confidence 566789999999999999999999 778999999999975 7776543
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=253.82 Aligned_cols=195 Identities=19% Similarity=0.266 Sum_probs=168.6
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH-------HHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA-------ANELIQKWQEEWSGKGLPLNIEAMELDLLSLDS 134 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 134 (298)
++++|++|||||++|||.++|++|+++|++|++++|+.+. +++..+++... +.++.++++|++++++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~D~~~~~~ 76 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAA------GGQALPLVGDVRDEDQ 76 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhc------CCceEEEEecCCCHHH
Confidence 4678999999999999999999999999999999998653 34444444331 2478899999999999
Q ss_pred HHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC
Q 022369 135 VVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 135 v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~ 214 (298)
++++++++.+.+|++|+||||||.....+..+.+.++|++.+++|+.+++.++++++|.|+++++|+||++||..+..+.
T Consensus 77 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~ 156 (273)
T PRK08278 77 VAAAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDPK 156 (273)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhcccc
Confidence 99999999999999999999999877777888999999999999999999999999999998888999999997643221
Q ss_pred CCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCC-ccccCccCC
Q 022369 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPG-IVSTNVARD 276 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg-~v~T~~~~~ 276 (298)
..++...|++||+++++|+++++.|+ .++||+|++|+|| .++|++.+.
T Consensus 157 -------------~~~~~~~Y~~sK~a~~~~~~~la~el-~~~~I~v~~i~Pg~~i~t~~~~~ 205 (273)
T PRK08278 157 -------------WFAPHTAYTMAKYGMSLCTLGLAEEF-RDDGIAVNALWPRTTIATAAVRN 205 (273)
T ss_pred -------------ccCCcchhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeCCCccccHHHHh
Confidence 01566789999999999999999999 7889999999999 689986553
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=254.36 Aligned_cols=194 Identities=21% Similarity=0.256 Sum_probs=173.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.+.+++..+++... +.++.++.+|++|.+++++++++
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~d~~~~~~~~~~ 76 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQ------GAEVLGVRTDVSDAAQVEALADA 76 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHH
Confidence 567899999999999999999999999999999999988888877776542 24688899999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCC------CeEEEEcCCccccCCC
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSP------SRIINVNSVMHYVGFV 215 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~------g~Iv~isS~~~~~~~~ 215 (298)
+.+.+|++|+||||||.....++.+.+.++|++.+++|+.|+++++++++|.|+++.. |+||++||.+++.+.
T Consensus 77 ~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~- 155 (287)
T PRK06194 77 ALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLLAP- 155 (287)
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC-
Confidence 9999999999999999987777888899999999999999999999999999988654 799999999877654
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcC-CCCCcEEEEeeCCccccCccCC
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLP-AESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~-~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++.+|+++++.|+. ...+|++++++||+|+|++.+.
T Consensus 156 --------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~~~~~ 203 (287)
T PRK06194 156 --------------PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTGIWQS 203 (287)
T ss_pred --------------CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCccccc
Confidence 6677899999999999999999983 2467999999999999998754
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=249.91 Aligned_cols=193 Identities=23% Similarity=0.273 Sum_probs=172.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEE-EEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVM-AVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+.+++++||||++|||+++|++|+++|++|++ .+|+.++.+++.++++.. +.++.++.+|++|++++.+++++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 75 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEAL------GRKALAVKANVGDVEKIKEMFAQ 75 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCHHHHHHHHHH
Confidence 45789999999999999999999999999876 588888888777777543 23688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+.++++|+||||||.....++.+.+.++++..+++|+.+++.++++++|.|++++.|+||++||..+..+.
T Consensus 76 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~------- 148 (250)
T PRK08063 76 IDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRYL------- 148 (250)
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccCC-------
Confidence 9999999999999999887778889999999999999999999999999999998888999999998655443
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|+++|++++.|+++++.|+ .+.||++++|+||++.|++....
T Consensus 149 --------~~~~~y~~sK~a~~~~~~~~~~~~-~~~~i~v~~i~pg~v~t~~~~~~ 195 (250)
T PRK08063 149 --------ENYTTVGVSKAALEALTRYLAVEL-APKGIAVNAVSGGAVDTDALKHF 195 (250)
T ss_pred --------CCccHHHHHHHHHHHHHHHHHHHH-hHhCeEEEeEecCcccCchhhhc
Confidence 566789999999999999999999 78899999999999999987654
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=249.47 Aligned_cols=211 Identities=22% Similarity=0.297 Sum_probs=173.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++|++|||||++|||+++|+.|+++|++|+++++ +.++.+.+.+++ . .++.++++|++|+++++++++
T Consensus 2 ~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~----~-----~~~~~~~~D~~~~~~~~~~~~ 72 (253)
T PRK08642 2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADEL----G-----DRAIALQADVTDREQVQAMFA 72 (253)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh----C-----CceEEEEcCCCCHHHHHHHHH
Confidence 356799999999999999999999999999998765 444444443332 1 368889999999999999999
Q ss_pred HHhcccCC-ccEEEEccCCCC------CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccC
Q 022369 141 AWNGRLGP-LHVLINNAGIFS------IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213 (298)
Q Consensus 141 ~~~~~~g~-idilVnnag~~~------~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~ 213 (298)
++.+.+|. +|++|||||+.. ..++.+.+.++|++.+++|+.+++.++++++|.|.+++.|+||++||..+..+
T Consensus 73 ~~~~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~ 152 (253)
T PRK08642 73 TATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQNP 152 (253)
T ss_pred HHHHHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccCC
Confidence 99998888 999999998742 23567889999999999999999999999999998887899999999754322
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-h-HHHHHHHHhhhhc
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-P-KIVQAAYHLIPYF 291 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-~-~~~~~~~~~~p~~ 291 (298)
.++...|++||+++++|++++++|+ .++||+||+|+||+++|+..... + +..+......|+.
T Consensus 153 ---------------~~~~~~Y~~sK~a~~~l~~~la~~~-~~~~i~v~~i~pG~v~t~~~~~~~~~~~~~~~~~~~~~~ 216 (253)
T PRK08642 153 ---------------VVPYHDYTTAKAALLGLTRNLAAEL-GPYGITVNMVSGGLLRTTDASAATPDEVFDLIAATTPLR 216 (253)
T ss_pred ---------------CCCccchHHHHHHHHHHHHHHHHHh-CccCeEEEEEeecccCCchhhccCCHHHHHHHHhcCCcC
Confidence 2456689999999999999999999 78899999999999999865432 2 2333444567877
Q ss_pred cc-CCCC
Q 022369 292 IF-NPQE 297 (298)
Q Consensus 292 ~~-~pe~ 297 (298)
++ +|+|
T Consensus 217 ~~~~~~~ 223 (253)
T PRK08642 217 KVTTPQE 223 (253)
T ss_pred CCCCHHH
Confidence 76 6664
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=254.79 Aligned_cols=214 Identities=23% Similarity=0.258 Sum_probs=166.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|++||||| +|||+++|++|+ +|++|++++|+.+++++..+++... +.++.++++|++|+++++++++++ +
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~i~~~~~~~-~ 72 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREA------GFDVSTQEVDVSSRESVKALAATA-Q 72 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEeecCCHHHHHHHHHHH-H
Confidence 589999998 699999999997 8999999999998888877776542 236889999999999999999998 4
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC-Cc------
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV-DT------ 217 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~-~~------ 217 (298)
++|++|+||||||+.. +.++|++.+++|+.|++++++.++|.|.+ +|++|++||.++..+.. ..
T Consensus 73 ~~g~id~li~nAG~~~-------~~~~~~~~~~vN~~g~~~l~~~~~~~m~~--~g~iv~isS~~~~~~~~~~~~~~~~~ 143 (275)
T PRK06940 73 TLGPVTGLVHTAGVSP-------SQASPEAILKVDLYGTALVLEEFGKVIAP--GGAGVVIASQSGHRLPALTAEQERAL 143 (275)
T ss_pred hcCCCCEEEECCCcCC-------chhhHHHHHHHhhHHHHHHHHHHHHHHhh--CCCEEEEEecccccCcccchhhhccc
Confidence 6799999999999752 23679999999999999999999999965 37899999988765420 00
Q ss_pred ---cccccc--c---cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC-c----hHHHHHH
Q 022369 218 ---EDMNVV--S---GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD-L----PKIVQAA 284 (298)
Q Consensus 218 ---~~~~~~--~---~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~-~----~~~~~~~ 284 (298)
+..+.. . .....+.+..|++||+|+.+++++++.|+ .++||+||+|+||+++|++... + .+..+..
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gIrvn~i~PG~v~T~~~~~~~~~~~~~~~~~~ 222 (275)
T PRK06940 144 ATTPTEELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKW-GERGARINSISPGIISTPLAQDELNGPRGDGYRNM 222 (275)
T ss_pred cccccccccccccccccccCCccchhHHHHHHHHHHHHHHHHHH-ccCCeEEEEeccCcCcCccchhhhcCCchHHHHHH
Confidence 000000 0 00000245789999999999999999999 8889999999999999998743 1 1223334
Q ss_pred HHhhhhccc-CCCC
Q 022369 285 YHLIPYFIF-NPQE 297 (298)
Q Consensus 285 ~~~~p~~~~-~pe~ 297 (298)
....|+.++ +|||
T Consensus 223 ~~~~p~~r~~~pee 236 (275)
T PRK06940 223 FAKSPAGRPGTPDE 236 (275)
T ss_pred hhhCCcccCCCHHH
Confidence 446687777 7664
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=247.85 Aligned_cols=214 Identities=28% Similarity=0.336 Sum_probs=184.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|+++||||++|||+++|++|+++|++|++++|+++++++..++++.. +.++.++.+|++|+++++++++
T Consensus 3 ~~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~ 76 (250)
T PRK12939 3 SNLAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA------GGRAHAIAADLADPASVQRFFD 76 (250)
T ss_pred CCCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHH
Confidence 3567899999999999999999999999999999999999888887777542 1368999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.++++|++|||+|.....++.+.+.+++++.+++|+.+++.+++.++|.|.+++.|++|++||..+..+.
T Consensus 77 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 150 (250)
T PRK12939 77 AAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGA------ 150 (250)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCC------
Confidence 99999999999999999877777788899999999999999999999999999998888999999998765554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch--HHHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP--KIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~--~~~~~~~~~~p~~~~-~pe 296 (298)
+....|+++|++++.+++.++.|+ ...+|+|++|+||+++|++.+... ...+.+....|+.++ +|+
T Consensus 151 ---------~~~~~y~~sK~~~~~~~~~l~~~~-~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (250)
T PRK12939 151 ---------PKLGAYVASKGAVIGMTRSLAREL-GGRGITVNAIAPGLTATEATAYVPADERHAYYLKGRALERLQVPD 219 (250)
T ss_pred ---------CCcchHHHHHHHHHHHHHHHHHHH-hhhCEEEEEEEECCCCCccccccCChHHHHHHHhcCCCCCCCCHH
Confidence 566789999999999999999999 778999999999999999987553 233333344555554 443
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=250.29 Aligned_cols=192 Identities=23% Similarity=0.232 Sum_probs=163.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcC-CEEEEEEcCchH-HHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESG-AHVVMAVRNLKA-ANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G-~~Vil~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++++|||||++|||+++|++|+++| ++|++++|+++. ++++.+++.... +.+++++++|++|++++++++++
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-----~~~v~~~~~D~~~~~~~~~~~~~ 81 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-----ASSVEVIDFDALDTDSHPKVIDA 81 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-----CCceEEEEecCCChHHHHHHHHH
Confidence 46899999999999999999999995 899999999886 888877776531 13689999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+ +|++|++|||+|+.........+.++.++.+++|+.+++.+++.++|.|++++.|+||++||..+..+.
T Consensus 82 ~~~-~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~~~------- 153 (253)
T PRK07904 82 AFA-GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGERVR------- 153 (253)
T ss_pred HHh-cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcCCC-------
Confidence 887 489999999999864322112234556678999999999999999999999888999999998765443
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|++||+++.+|+++|+.|+ .++||+|++|+||+++|++....
T Consensus 154 --------~~~~~Y~~sKaa~~~~~~~l~~el-~~~~i~v~~v~Pg~v~t~~~~~~ 200 (253)
T PRK07904 154 --------RSNFVYGSTKAGLDGFYLGLGEAL-REYGVRVLVVRPGQVRTRMSAHA 200 (253)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHH-hhcCCEEEEEeeCceecchhccC
Confidence 566779999999999999999999 78899999999999999987653
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=250.97 Aligned_cols=191 Identities=20% Similarity=0.264 Sum_probs=169.3
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|+++||||++|||.++|++|+++|++|++++|+.+.++...+++... +.++.++.+|++++++++++++
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~i~~~~~ 78 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA------GPEGLGVSADVRDYAAVEAAFA 78 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh------CCceEEEECCCCCHHHHHHHHH
Confidence 4578899999999999999999999999999999999988887776666542 1257889999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.++++|++|||||.....++.+.+.++|++.+++|+.|++.++++++|.|.++ +|+||++||..+..+.
T Consensus 79 ~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~-~g~iv~iss~~~~~~~------ 151 (264)
T PRK07576 79 QIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRP-GASIIQISAPQAFVPM------ 151 (264)
T ss_pred HHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCEEEEECChhhccCC------
Confidence 999999999999999997766677888999999999999999999999999999765 4899999998765443
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccc-cCcc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVS-TNVA 274 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~-T~~~ 274 (298)
+....|+++|+++++|+++++.|+ ..+||+|++|+||.++ |+..
T Consensus 152 ---------~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~v~~v~pg~~~~t~~~ 196 (264)
T PRK07576 152 ---------PMQAHVCAAKAGVDMLTRTLALEW-GPEGIRVNSIVPGPIAGTEGM 196 (264)
T ss_pred ---------CCccHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecccccCcHHH
Confidence 777889999999999999999999 7789999999999997 5543
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=249.88 Aligned_cols=190 Identities=23% Similarity=0.292 Sum_probs=169.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+++|+++||||++|||+++|++|+++|++|++++|++++++++.+++... +.++.++.+|++|+++++++++++
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 76 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDL------GRRALAVPTDITDEDQCANLVALA 76 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHh------CCceEEEecCCCCHHHHHHHHHHH
Confidence 56799999999999999999999999999999999998888877776542 236889999999999999999999
Q ss_pred hcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 143 NGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
.+++|++|++|||||... ..++.+.+.++|++.+++|+.+++.+++++++.|.+++ |+||++||..+..+.
T Consensus 77 ~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~ii~~sS~~~~~~~------- 148 (258)
T PRK07890 77 LERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESG-GSIVMINSMVLRHSQ------- 148 (258)
T ss_pred HHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCC-CEEEEEechhhccCC-------
Confidence 999999999999999754 35677889999999999999999999999999997754 799999998755443
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
++...|+++|+++..++++++.|+ .++||++++++||++.|++..
T Consensus 149 --------~~~~~Y~~sK~a~~~l~~~~a~~~-~~~~i~v~~v~pg~v~~~~~~ 193 (258)
T PRK07890 149 --------PKYGAYKMAKGALLAASQSLATEL-GPQGIRVNSVAPGYIWGDPLK 193 (258)
T ss_pred --------CCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEeCCccCcHHHH
Confidence 677889999999999999999999 778999999999999999754
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=250.97 Aligned_cols=190 Identities=27% Similarity=0.424 Sum_probs=169.7
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++..... ..+.++++|++|+++++++++++.+.
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~ 75 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGG-----TVPEHRALDISDYDAVAAFAADIHAA 75 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-----CcceEEEeeCCCHHHHHHHHHHHHHh
Confidence 4799999999999999999999999999999999888888777764311 23566799999999999999999999
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCccccCCCCcccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
++++|++|||+|....+++.+.+.+++++.+++|+.+++.++++++|.|.++ +.|+||++||..+..+.
T Consensus 76 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~---------- 145 (272)
T PRK07832 76 HGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVAL---------- 145 (272)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCC----------
Confidence 9999999999998877778899999999999999999999999999999764 46899999998765544
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++.+|+++++.|+ .++||+|++|+||.++|++.+.
T Consensus 146 -----~~~~~Y~~sK~a~~~~~~~l~~e~-~~~~i~v~~v~Pg~v~t~~~~~ 191 (272)
T PRK07832 146 -----PWHAAYSASKFGLRGLSEVLRFDL-ARHGIGVSVVVPGAVKTPLVNT 191 (272)
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccCcchhc
Confidence 677789999999999999999999 7889999999999999998764
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=248.82 Aligned_cols=214 Identities=22% Similarity=0.330 Sum_probs=183.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|+++||||++|||+++|++|+++|++|++++|+.++++++.+++... +.++.++.+|+++++++++++++
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAE------GGAAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHH
Confidence 577899999999999999999999999999999999999888887766542 13688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC--------CCeEEEEcCCccccC
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS--------PSRIINVNSVMHYVG 213 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~--------~g~Iv~isS~~~~~~ 213 (298)
+.+.++++|++|||||.....++.+.+.++|+.++++|+.+++.++++++|.|.++. .|+||++||..+..+
T Consensus 80 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~ 159 (258)
T PRK06949 80 AETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRV 159 (258)
T ss_pred HHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCC
Confidence 999999999999999987777777888999999999999999999999999998764 479999999876544
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch--HHHHHHHHhhhhc
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP--KIVQAAYHLIPYF 291 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~--~~~~~~~~~~p~~ 291 (298)
. +...+|+++|+++..++++++.|+ .++||+|++|+||+|+|++.+... +..+...+.+|..
T Consensus 160 ~---------------~~~~~Y~~sK~a~~~~~~~la~~~-~~~~i~v~~v~pG~v~t~~~~~~~~~~~~~~~~~~~~~~ 223 (258)
T PRK06949 160 L---------------PQIGLYCMSKAAVVHMTRAMALEW-GRHGINVNAICPGYIDTEINHHHWETEQGQKLVSMLPRK 223 (258)
T ss_pred C---------------CCccHHHHHHHHHHHHHHHHHHHH-HhcCeEEEEEeeCCCcCCcchhccChHHHHHHHhcCCCC
Confidence 3 667789999999999999999999 778999999999999999976431 2223344566766
Q ss_pred cc-CCCC
Q 022369 292 IF-NPQE 297 (298)
Q Consensus 292 ~~-~pe~ 297 (298)
++ +|||
T Consensus 224 ~~~~p~~ 230 (258)
T PRK06949 224 RVGKPED 230 (258)
T ss_pred CCcCHHH
Confidence 65 5553
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=247.96 Aligned_cols=190 Identities=26% Similarity=0.331 Sum_probs=171.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|+++||||++|||.++|++|+++|++|++++|+.+.+++..+++... +.++..+.+|++|+++++++++++.+.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~i~~~~~~~~~~ 74 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQA------GGKAVAYKLDVSDKDQVFSAIDQAAEK 74 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999988888777776542 246889999999999999999999999
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
++++|++|||||.....++.+.+.++|++.+++|+.+++.+++.+++.|++++ +|+||++||..+..+.
T Consensus 75 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 144 (254)
T TIGR02415 75 FGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGN---------- 144 (254)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCC----------
Confidence 99999999999998777888899999999999999999999999999998865 4899999998766654
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|+++|+++++|+++++.|+ .+.||+|++|+||+++|++.+..
T Consensus 145 -----~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~Pg~i~t~~~~~~ 191 (254)
T TIGR02415 145 -----PILSAYSSTKFAVRGLTQTAAQEL-APKGITVNAYCPGIVKTPMWEEI 191 (254)
T ss_pred -----CCCcchHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCcccChhhhhh
Confidence 677889999999999999999999 77899999999999999997654
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=249.91 Aligned_cols=190 Identities=23% Similarity=0.331 Sum_probs=174.1
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
++++||||++|||+++|++|+++|++|++++|+.++++++.+++... +.++.++++|++|+++++++++++.+.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~i~~~ 74 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREA------GGDGFYQRCDVRDYSQLTALAQACEEK 74 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999988888777642 236889999999999999999999999
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
++++|+||||||+....++.+.+.+++++.+++|+.+++.+++.++|.|.+++.++||++||..+..+.
T Consensus 75 ~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~----------- 143 (270)
T PRK05650 75 WGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQG----------- 143 (270)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCC-----------
Confidence 999999999999988778888999999999999999999999999999998888999999999876654
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|+++|+++.+|+++|+.|+ .+.||++++|+||+++|++....
T Consensus 144 ----~~~~~Y~~sKaa~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~ 190 (270)
T PRK05650 144 ----PAMSSYNVAKAGVVALSETLLVEL-ADDEIGVHVVCPSFFQTNLLDSF 190 (270)
T ss_pred ----CCchHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCccccCccccc
Confidence 677889999999999999999999 77899999999999999987653
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=248.27 Aligned_cols=187 Identities=26% Similarity=0.357 Sum_probs=167.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|+++||||++|||.++|++|+++|++|++++|+.+++++..+++ +.++.++++|++|.+++.++++.
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~ 73 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL---------GESALVIRADAGDVAAQKALAQA 73 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh---------CCceEEEEecCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999987776655443 13678899999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+.++++|++|||||.....++.+.+.+++++.+++|+.+++.++++++|+|.+ .+++|+++|..+..+.
T Consensus 74 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~~i~~~S~~~~~~~------- 144 (249)
T PRK06500 74 LAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLAN--PASIVLNGSINAHIGM------- 144 (249)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc--CCEEEEEechHhccCC-------
Confidence 9999999999999999877677788899999999999999999999999999864 4789999998766554
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|+++|+++++++++++.|+ .++||++++++||.++|++.+
T Consensus 145 --------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~pg~~~t~~~~ 189 (249)
T PRK06500 145 --------PNSSVYAASKAALLSLAKTLSGEL-LPRGIRVNAVSPGPVQTPLYG 189 (249)
T ss_pred --------CCccHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcCCCHHHH
Confidence 667889999999999999999999 778999999999999999864
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=251.39 Aligned_cols=183 Identities=30% Similarity=0.390 Sum_probs=167.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++++++||||++|||+++|++|+++|++|++++|+.++.+.. ..++++++|++|+++++++++++.
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~--------------~~~~~~~~D~~d~~~~~~~~~~~~ 68 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAPI--------------PGVELLELDVTDDASVQAAVDEVI 68 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcccc--------------CCCeeEEeecCCHHHHHHHHHHHH
Confidence 468999999999999999999999999999999997654321 257889999999999999999999
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+.+|++|+||||||+...+++.+.+.+++++.+++|+.|++.+++.++|.|++++.|+||++||..++.+.
T Consensus 69 ~~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 139 (270)
T PRK06179 69 ARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFLPA--------- 139 (270)
T ss_pred HhCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccCCC---------
Confidence 99999999999999988778888999999999999999999999999999999888999999998876654
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++++|+++++.|+ +++||++++|+||+++|++..+
T Consensus 140 ------~~~~~Y~~sK~a~~~~~~~l~~el-~~~gi~v~~v~pg~~~t~~~~~ 185 (270)
T PRK06179 140 ------PYMALYAASKHAVEGYSESLDHEV-RQFGIRVSLVEPAYTKTNFDAN 185 (270)
T ss_pred ------CCccHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEeCCCcccccccc
Confidence 677889999999999999999999 7889999999999999998764
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=250.34 Aligned_cols=187 Identities=25% Similarity=0.336 Sum_probs=170.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+|++|||||++|||+++|++|+++|++|++++|+.++++++.+.+ +..+.++++|++|+++++++++++.
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~~ 72 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY---------GDRLLPLALDVTDRAAVFAAVETAV 72 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---------cCCeeEEEccCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999988877654432 1257888999999999999999999
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+.++++|++|||||+...+++.+.+.+++++.+++|+.+++.+++.++|.|++++.++||++||..++.+.
T Consensus 73 ~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~--------- 143 (275)
T PRK08263 73 EHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAF--------- 143 (275)
T ss_pred HHcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCC---------
Confidence 99999999999999988888889999999999999999999999999999998888999999998876654
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|+++|+++.++++.++.|+ .++||+|++|+||.++|++..
T Consensus 144 ------~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~Pg~~~t~~~~ 188 (275)
T PRK08263 144 ------PMSGIYHASKWALEGMSEALAQEV-AEFGIKVTLVEPGGYSTDWAG 188 (275)
T ss_pred ------CCccHHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEecCCccCCccc
Confidence 667789999999999999999999 788999999999999999874
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=245.62 Aligned_cols=210 Identities=27% Similarity=0.377 Sum_probs=179.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++++++||||++|||++++++|+++|+.|++.+|+.+++++..+.+. .++.++.+|+++.+++++++++
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~ 73 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELG---------ERVKIFPANLSDRDEVKALGQK 73 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC---------CceEEEEccCCCHHHHHHHHHH
Confidence 5678999999999999999999999999999999999888776654431 2678899999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+.++++|++|||||.....++.+.+.++|++.+++|+.+++++++++++.|.+++.++||++||..+..+.
T Consensus 74 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------- 146 (245)
T PRK12936 74 AEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGN------- 146 (245)
T ss_pred HHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCC-------
Confidence 9999999999999999977777788899999999999999999999999999988778999999998766554
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHH-HHHhhhhccc-CCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQA-AYHLIPYFIF-NPQ 296 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~-~~~~~p~~~~-~pe 296 (298)
+....|+++|+++.++++.++.|+ ...||++++++||+++|++.....+...+ .....|+.++ +|+
T Consensus 147 --------~~~~~Y~~sk~a~~~~~~~la~~~-~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (245)
T PRK12936 147 --------PGQANYCASKAGMIGFSKSLAQEI-ATRNVTVNCVAPGFIESAMTGKLNDKQKEAIMGAIPMKRMGTGA 214 (245)
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHh-hHhCeEEEEEEECcCcCchhcccChHHHHHHhcCCCCCCCcCHH
Confidence 666789999999999999999999 77899999999999999987765433322 2334565555 443
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=243.40 Aligned_cols=204 Identities=24% Similarity=0.328 Sum_probs=166.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|++|||||++|||+++|++|+++|++|++++| +.+.++++.+++ .+.++.+|++|.+++.++++
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~-----------~~~~~~~D~~~~~~~~~~~~ 71 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET-----------GATAVQTDSADRDAVIDVVR 71 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh-----------CCeEEecCCCCHHHHHHHHH
Confidence 467899999999999999999999999999998876 445444443321 24578899999998887765
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+ ++++|++|||||.....+..+.+.++|++.+++|+.+++.+++.+++.|.+ .|+||++||..+..
T Consensus 72 ~----~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~g~iv~isS~~~~~-------- 137 (237)
T PRK12742 72 K----SGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPE--GGRIIIIGSVNGDR-------- 137 (237)
T ss_pred H----hCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhc--CCeEEEEecccccc--------
Confidence 4 578999999999876667778899999999999999999999999999964 47999999986421
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHHhhhhccc-CCCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~~~-~pe~ 297 (298)
.+.+....|+++|+++++++++++.|+ .++||+||+|+||+++|++.....+..+......|+.++ +|||
T Consensus 138 ------~~~~~~~~Y~~sKaa~~~~~~~la~~~-~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~p~~ 208 (237)
T PRK12742 138 ------MPVAGMAAYAASKSALQGMARGLARDF-GPRGITINVVQPGPIDTDANPANGPMKDMMHSFMAIKRHGRPEE 208 (237)
T ss_pred ------CCCCCCcchHHhHHHHHHHHHHHHHHH-hhhCeEEEEEecCcccCCccccccHHHHHHHhcCCCCCCCCHHH
Confidence 233677889999999999999999999 888999999999999999976544333334446677666 6654
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=235.31 Aligned_cols=184 Identities=26% Similarity=0.319 Sum_probs=168.6
Q ss_pred CCEEEEeCCC-CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGST-SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas-~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|.++|||++ +|||.++|++|++.|+.|+.++|+.+...++..+ ..+..+.+|+++++++..+..++.
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~-----------~gl~~~kLDV~~~~~V~~v~~evr 75 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ-----------FGLKPYKLDVSKPEEVVTVSGEVR 75 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh-----------hCCeeEEeccCChHHHHHHHHHHh
Confidence 4789999997 7999999999999999999999998887777533 258889999999999999999999
Q ss_pred c-ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 144 G-RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 144 ~-~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
+ .+|.+|+|+||||..-..|..+.+.++.++.|++|++|++.++|++- +|..+.+|.|||+.|.+++.+.
T Consensus 76 ~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~-h~likaKGtIVnvgSl~~~vpf-------- 146 (289)
T KOG1209|consen 76 ANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALS-HFLIKAKGTIVNVGSLAGVVPF-------- 146 (289)
T ss_pred hCCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHH-HHHHHccceEEEecceeEEecc--------
Confidence 8 78999999999999888899999999999999999999999999998 5655667999999999877665
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
|..+.|+|||+|+.++++.|+.|+ ++.||+|..+.||.|.|++...
T Consensus 147 -------pf~~iYsAsKAAihay~~tLrlEl-~PFgv~Vin~itGGv~T~Ia~k 192 (289)
T KOG1209|consen 147 -------PFGSIYSASKAAIHAYARTLRLEL-KPFGVRVINAITGGVATDIADK 192 (289)
T ss_pred -------chhhhhhHHHHHHHHhhhhcEEee-eccccEEEEecccceecccccC
Confidence 899999999999999999999999 9999999999999999999765
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=244.28 Aligned_cols=201 Identities=23% Similarity=0.298 Sum_probs=168.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+++|+++||||++|||+++|+.|+++|++|++++|+.+++++..+++...... ..+.++++|++|++++.++++++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~ 77 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKS----KKLSLVELDITDQESLEEFLSKS 77 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCC----CceeEEEecCCCHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999988888877553321 24677799999999999999999
Q ss_pred hcccCCccEEEEccCCCC---CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 143 NGRLGPLHVLINNAGIFS---IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
.+.++++|++|||||... ..++.+.+.+++++.+++|+.+++.++++++|.|++++.|+||++||..+..+....
T Consensus 78 ~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~-- 155 (256)
T PRK09186 78 AEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFE-- 155 (256)
T ss_pred HHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccch--
Confidence 999999999999998643 345778899999999999999999999999999998888999999998765432100
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
.. ...+......|++||+++++|+++++.|+ .++||+|++|+||.+.|+.
T Consensus 156 --~~-~~~~~~~~~~Y~~sK~a~~~l~~~la~e~-~~~~i~v~~i~Pg~~~~~~ 205 (256)
T PRK09186 156 --IY-EGTSMTSPVEYAAIKAGIIHLTKYLAKYF-KDSNIRVNCVSPGGILDNQ 205 (256)
T ss_pred --hc-cccccCCcchhHHHHHHHHHHHHHHHHHh-CcCCeEEEEEecccccCCC
Confidence 00 01111223469999999999999999999 8889999999999998775
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=246.33 Aligned_cols=192 Identities=29% Similarity=0.344 Sum_probs=166.6
Q ss_pred CCCCCEEEEeCCCC--chHHHHHHHHHHcCCEEEEEEcCc-----------hHHHHHHHHHHHhhcCCCCCccEEEEEcC
Q 022369 62 PVNDLTCIVTGSTS--GIGREIARQLAESGAHVVMAVRNL-----------KAANELIQKWQEEWSGKGLPLNIEAMELD 128 (298)
Q Consensus 62 ~~~~k~vlITGas~--GIG~~~a~~la~~G~~Vil~~r~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 128 (298)
++++|++|||||++ |||.++|++|+++|++|++++|++ +....+.+++.. .+.++.++.+|
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~D 75 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIES------YGVRCEHMEID 75 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHh------cCCeEEEEECC
Confidence 46789999999994 999999999999999999999982 222223333322 12478999999
Q ss_pred CCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCC
Q 022369 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSV 208 (298)
Q Consensus 129 ~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~ 208 (298)
++++++++++++++.++++++|++|||||+....++.+.+.+++++.+++|+.+++.+++++++.|.++..|+||++||.
T Consensus 76 ~~~~~~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~ 155 (256)
T PRK12748 76 LSQPYAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSG 155 (256)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCc
Confidence 99999999999999999999999999999877777888899999999999999999999999999988778999999998
Q ss_pred ccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 209 MHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.++.+. +....|+++|+++++++++++.|+ ..+||+|++++||+++|++..
T Consensus 156 ~~~~~~---------------~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~i~Pg~~~t~~~~ 206 (256)
T PRK12748 156 QSLGPM---------------PDELAYAATKGAIEAFTKSLAPEL-AEKGITVNAVNPGPTDTGWIT 206 (256)
T ss_pred cccCCC---------------CCchHHHHHHHHHHHHHHHHHHHH-HHhCeEEEEEEeCcccCCCCC
Confidence 765443 567789999999999999999999 788999999999999999754
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=243.86 Aligned_cols=214 Identities=27% Similarity=0.432 Sum_probs=179.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|+++||||++|||.++|++|+++|++|+++.+ +++..++..+++.+. +.++.++.+|+++++++.++++
T Consensus 3 ~~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~ 76 (247)
T PRK12935 3 QLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKE------GHDVYAVQADVSKVEDANRLVE 76 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHH
Confidence 467899999999999999999999999999987654 556666666665432 2368999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.++++|++|||||......+.+.+.+++++.+++|+.+++.++++++|.|.+++.++||++||..+..+.
T Consensus 77 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 150 (247)
T PRK12935 77 EAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGG------ 150 (247)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCC------
Confidence 99999999999999999877666778888999999999999999999999999988778899999998766554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHH-HHHHHhhhhccc-CCCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIV-QAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~-~~~~~~~p~~~~-~pe~ 297 (298)
++...|+++|+++.+++++++.|+ .+.||+++.|+||.++|++....++.. .......+...+ .|||
T Consensus 151 ---------~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ed 219 (247)
T PRK12935 151 ---------FGQTNYSAAKAGMLGFTKSLALEL-AKTNVTVNAICPGFIDTEMVAEVPEEVRQKIVAKIPKKRFGQADE 219 (247)
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHH-HHcCcEEEEEEeCCCcChhhhhccHHHHHHHHHhCCCCCCcCHHH
Confidence 567789999999999999999999 778999999999999999877665432 223334444444 4443
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=243.19 Aligned_cols=212 Identities=26% Similarity=0.373 Sum_probs=178.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc-hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL-KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|+++||||++|||+++|++|+++|++|+++.|+. +..+++.+++... +.++.++++|++++++++++++
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~ 75 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAA------GGRAIAVQADVADAAAVTRLFD 75 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHH
Confidence 46789999999999999999999999999999887754 3455555555432 2478999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.++++|++|||||+....++.+.+.++|++.+++|+.+++.++++++|.|.+ .|+||++||..+..+.
T Consensus 76 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~iv~~ss~~~~~~~------ 147 (245)
T PRK12937 76 AAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQ--GGRIINLSTSVIALPL------ 147 (245)
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhcc--CcEEEEEeeccccCCC------
Confidence 99999999999999999877667788899999999999999999999999999965 4799999998755443
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC--chHHHHHHHHhhhhccc-CCCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD--LPKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~--~~~~~~~~~~~~p~~~~-~pe~ 297 (298)
+....|+++|+++..++++++.|+ ...||++++|+||+++|+|..+ .++..+.+....|+.++ +|+|
T Consensus 148 ---------~~~~~Y~~sK~a~~~~~~~~a~~~-~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 217 (245)
T PRK12937 148 ---------PGYGPYAASKAAVEGLVHVLANEL-RGRGITVNAVAPGPVATELFFNGKSAEQIDQLAGLAPLERLGTPEE 217 (245)
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCCccCchhcccCCHHHHHHHHhcCCCCCCCCHHH
Confidence 777889999999999999999999 7789999999999999999532 33444445556676665 5543
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=247.16 Aligned_cols=190 Identities=25% Similarity=0.302 Sum_probs=166.5
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||+++|++|+++|++|++++|++++. +..+++.+. +.++.++.+|++++++++++++
T Consensus 3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~ 75 (258)
T PRK08628 3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRAL------QPRAEFVQVDLTDDAQCRDAVE 75 (258)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhc------CCceEEEEccCCCHHHHHHHHH
Confidence 357899999999999999999999999999999999998776 555555442 2368899999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.++++|++|||||......+.+.. ++|++.+++|+.+++.+++.++|.|+++ .|+||++||..+..+.
T Consensus 76 ~~~~~~~~id~vi~~ag~~~~~~~~~~~-~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~iv~~ss~~~~~~~------ 147 (258)
T PRK08628 76 QTVAKFGRIDGLVNNAGVNDGVGLEAGR-EAFVASLERNLIHYYVMAHYCLPHLKAS-RGAIVNISSKTALTGQ------ 147 (258)
T ss_pred HHHHhcCCCCEEEECCcccCCCcccCCH-HHHHHHHhhhhHHHHHHHHHHHHHhhcc-CcEEEEECCHHhccCC------
Confidence 9999999999999999976544444444 9999999999999999999999998765 4899999998866554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|++||+++++++++++.|+ .++||+|++|+||.++|++.+
T Consensus 148 ---------~~~~~Y~~sK~a~~~~~~~l~~e~-~~~~i~v~~v~pg~v~t~~~~ 192 (258)
T PRK08628 148 ---------GGTSGYAAAKGAQLALTREWAVAL-AKDGVRVNAVIPAEVMTPLYE 192 (258)
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCccCCHHHH
Confidence 667889999999999999999999 788999999999999999854
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=246.73 Aligned_cols=189 Identities=26% Similarity=0.334 Sum_probs=165.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.++||+++||||++|||.++|++|+++|++|++++|+.+++++..+++ ...++++|+++++++++++++
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~-----------~~~~~~~D~~~~~~~~~~~~~ 72 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV-----------GGLFVPTDVTDEDAVNALFDT 72 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc-----------CCcEEEeeCCCHHHHHHHHHH
Confidence 367899999999999999999999999999999999987766655443 125788999999999999999
Q ss_pred HhcccCCccEEEEccCCCCC--CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 142 WNGRLGPLHVLINNAGIFSI--GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+.+.++++|++|||||.... .++.+.+.+++++.+++|+.+++++++.++|.|++++.|+||++||..+..+..
T Consensus 73 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~~---- 148 (255)
T PRK06057 73 AAETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGSA---- 148 (255)
T ss_pred HHHHcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCCC----
Confidence 99988999999999997642 346677889999999999999999999999999988889999999987655431
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
++...|+++|+++.++++.++.|+ .++||+|++|+||.++|++.+.
T Consensus 149 ----------~~~~~Y~~sKaal~~~~~~l~~~~-~~~gi~v~~i~pg~v~t~~~~~ 194 (255)
T PRK06057 149 ----------TSQISYTASKGGVLAMSRELGVQF-ARQGIRVNALCPGPVNTPLLQE 194 (255)
T ss_pred ----------CCCcchHHHHHHHHHHHHHHHHHH-HhhCcEEEEEeeCCcCCchhhh
Confidence 345679999999999999999999 7789999999999999998754
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=249.31 Aligned_cols=187 Identities=27% Similarity=0.369 Sum_probs=168.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+|++|||||++|||++++++|+++|++|++++|+.++++.+.+.. +.++..+.+|++|++++.++++++.
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~ 73 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALH---------PDRALARLLDVTDFDAIDAVVADAE 73 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhc---------CCCeeEEEccCCCHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999988766553321 1368889999999999999999999
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+.++++|++|||||.....+..+.+.++|++.+++|+.|+++++++++|+|++++.|+||++||.++..+.
T Consensus 74 ~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~--------- 144 (277)
T PRK06180 74 ATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITM--------- 144 (277)
T ss_pred HHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCC---------
Confidence 99999999999999987778888999999999999999999999999999998888999999998866554
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
++...|+++|+++++++++++.|+ ++.||+|++|+||.++|++..
T Consensus 145 ------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~i~Pg~v~t~~~~ 189 (277)
T PRK06180 145 ------PGIGYYCGSKFALEGISESLAKEV-APFGIHVTAVEPGSFRTDWAG 189 (277)
T ss_pred ------CCcchhHHHHHHHHHHHHHHHHHh-hhhCcEEEEEecCCcccCccc
Confidence 777889999999999999999999 778999999999999998743
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=242.72 Aligned_cols=193 Identities=20% Similarity=0.284 Sum_probs=173.6
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|+++||||++|||+++|++|+++|++|++++|+.++++++.+++.+..+ +.++.++.+|++++++++++++++.+
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~ 77 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYP----GIKVAVAALDVNDHDQVFEVFAEFRD 77 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCC----CceEEEEEcCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999998888777665322 24789999999999999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
+++++|++|||||+....++.+.+.+.+++.+++|+.+++.+++.++|.|++.+.++||++||..+..+.
T Consensus 78 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 147 (248)
T PRK08251 78 ELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGL---------- 147 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCC----------
Confidence 9999999999999987777778888999999999999999999999999998888999999998776554
Q ss_pred cccCCC-CcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 225 GRRKYT-SLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 225 ~~~~~~-~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+ ....|++||+++.++++.++.|+ ...||+|++|+||+++|++.+..
T Consensus 148 -----~~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~v~t~~~~~~ 195 (248)
T PRK08251 148 -----PGVKAAYAASKAGVASLGEGLRAEL-AKTPIKVSTIEPGYIRSEMNAKA 195 (248)
T ss_pred -----CCCcccHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCcCcchhhhcc
Confidence 3 35679999999999999999999 67899999999999999987653
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=245.02 Aligned_cols=219 Identities=26% Similarity=0.347 Sum_probs=182.8
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..++++|++|||||++|||.++|++|+++|++|++++|+.++++...+++... +.++.++++|++|++++++++
T Consensus 7 ~~~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~------~~~~~~~~~Dl~d~~~i~~~~ 80 (259)
T PRK08213 7 LFDLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEAL------GIDALWIAADVADEADIERLA 80 (259)
T ss_pred hhCcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHHH
Confidence 34577899999999999999999999999999999999998888777666542 236888999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhh-hhcCCCCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPS-LIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~-m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+.++++|++|||||.....+..+.+.+.|++.+++|+.+++.+++++.++ |.+++.++||++||..+..+...
T Consensus 81 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~-- 158 (259)
T PRK08213 81 EETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPP-- 158 (259)
T ss_pred HHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCc--
Confidence 999999999999999999876667778899999999999999999999999998 77777789999999876655311
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-hHHHHHHHHhhhhccc-CCC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-PKIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-~~~~~~~~~~~p~~~~-~pe 296 (298)
..+....|+++|+++++++++++.|+ .++||++++|+||.++|++.+.. +...+......|..++ +||
T Consensus 159 ---------~~~~~~~Y~~sKa~~~~~~~~~a~~~-~~~gi~v~~v~Pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (259)
T PRK08213 159 ---------EVMDTIAYNTSKGAVINFTRALAAEW-GPHGIRVNAIAPGFFPTKMTRGTLERLGEDLLAHTPLGRLGDDE 228 (259)
T ss_pred ---------cccCcchHHHHHHHHHHHHHHHHHHh-cccCEEEEEEecCcCCCcchhhhhHHHHHHHHhcCCCCCCcCHH
Confidence 11345789999999999999999999 77899999999999999987654 3333334445565554 444
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=245.84 Aligned_cols=187 Identities=25% Similarity=0.235 Sum_probs=170.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|++|||||++|||+++|++|+++|++|++++|+.+.++++.+++. +.++.++++|++|.++++++++.+.+.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--------~~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--------AGNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--------CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999988887766543 136889999999999999999988776
Q ss_pred -cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 146 -LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 146 -~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
++++|++|||||.....++.+.+.+++++.+++|+.+++.+++++.+.|++++.++||++||..+..+.
T Consensus 74 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 143 (260)
T PRK08267 74 TGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQ---------- 143 (260)
T ss_pred cCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCC----------
Confidence 789999999999987777888899999999999999999999999999998888999999998876665
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|++||+++++|+++++.|+ .+.||++++|+||+++|++.+.
T Consensus 144 -----~~~~~Y~~sKaa~~~~~~~l~~~~-~~~~i~v~~i~pg~~~t~~~~~ 189 (260)
T PRK08267 144 -----PGLAVYSATKFAVRGLTEALDLEW-RRHGIRVADVMPLFVDTAMLDG 189 (260)
T ss_pred -----CCchhhHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCCcCCccccc
Confidence 667789999999999999999999 7789999999999999998774
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=241.85 Aligned_cols=208 Identities=25% Similarity=0.334 Sum_probs=175.6
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||.+++++|+++|++|++++|+.++.+.+.+++.+. +.++..+.+|+++.++++++++
T Consensus 2 ~~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~ 75 (250)
T PRK07774 2 GRFDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD------GGTAIAVQVDVSDPDSAKAMAD 75 (250)
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHH
Confidence 3567899999999999999999999999999999999988877777666542 1257789999999999999999
Q ss_pred HHhcccCCccEEEEccCCCC---CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 141 AWNGRLGPLHVLINNAGIFS---IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
++.+.++.+|+||||||+.. ..++.+.+.+++++.+++|+.+++.++++++|.|.+++.|+||++||..++.
T Consensus 76 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~----- 150 (250)
T PRK07774 76 ATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL----- 150 (250)
T ss_pred HHHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC-----
Confidence 99999999999999999864 2456678889999999999999999999999999988889999999986542
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-h-HHHHHHHHhhhhccc
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-P-KIVQAAYHLIPYFIF 293 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-~-~~~~~~~~~~p~~~~ 293 (298)
+...|++||+++++++++++.|+ ...||++++++||.++|++.+.. + ...+...+..|..++
T Consensus 151 -------------~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~ 214 (250)
T PRK07774 151 -------------YSNFYGLAKVGLNGLTQQLAREL-GGMNIRVNAIAPGPIDTEATRTVTPKEFVADMVKGIPLSRM 214 (250)
T ss_pred -------------CccccHHHHHHHHHHHHHHHHHh-CccCeEEEEEecCcccCccccccCCHHHHHHHHhcCCCCCC
Confidence 33569999999999999999999 77899999999999999997653 2 223333444554333
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-33 Score=250.10 Aligned_cols=212 Identities=31% Similarity=0.429 Sum_probs=171.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||.++|++|+++|++|++++|+.++++++.+++... +.++.++++|++|.+++++++++
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~v~~~~~~ 76 (322)
T PRK07453 3 QDAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP------PDSYTIIHIDLGDLDSVRRFVDD 76 (322)
T ss_pred CCCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc------CCceEEEEecCCCHHHHHHHHHH
Confidence 456899999999999999999999999999999999999888887776421 23688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCC-CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCC--CeEEEEcCCccccCCC---
Q 022369 142 WNGRLGPLHVLINNAGIFSI-GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSP--SRIINVNSVMHYVGFV--- 215 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~--g~Iv~isS~~~~~~~~--- 215 (298)
+.+.++++|+||||||+... ....+.+.++++..+++|+.|++.++++++|.|++++. ++||++||..+..+..
T Consensus 77 ~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~~~~~~~ 156 (322)
T PRK07453 77 FRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANPKELGGK 156 (322)
T ss_pred HHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCccccCCc
Confidence 88887899999999998643 22346788999999999999999999999999988753 6999999987654210
Q ss_pred ----Cccccccc-------------ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcc-ccCccCCc
Q 022369 216 ----DTEDMNVV-------------SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIV-STNVARDL 277 (298)
Q Consensus 216 ----~~~~~~~~-------------~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v-~T~~~~~~ 277 (298)
...+++.. ....++.+...|+.||++...+++.+++++...+||+|++++||.| .|++.++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~~t~~~~~~ 236 (322)
T PRK07453 157 IPIPAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGCVADTPLFRNT 236 (322)
T ss_pred cCCCCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCcccCCcccccC
Confidence 00011000 0113455667899999999999999999984457999999999999 59988765
Q ss_pred hH
Q 022369 278 PK 279 (298)
Q Consensus 278 ~~ 279 (298)
+.
T Consensus 237 ~~ 238 (322)
T PRK07453 237 PP 238 (322)
T ss_pred CH
Confidence 43
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=243.65 Aligned_cols=189 Identities=23% Similarity=0.314 Sum_probs=167.3
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcC-chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRN-LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
++||||++|||+++|+.|+++|++|++++|+ .++++++.+++..... ...+..+++|++|+++++++++++.+.+
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 77 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHG----EGVAFAAVQDVTDEAQWQALLAQAADAM 77 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCC----CceEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 7999999999999999999999999999998 7777777766654321 1245678999999999999999999999
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
+++|++|||||.....++.+.+.+++++.+++|+.+++.+++.++|.|++++.|+||++||..++.+.
T Consensus 78 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~------------ 145 (251)
T PRK07069 78 GGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAE------------ 145 (251)
T ss_pred CCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCC------------
Confidence 99999999999887777888899999999999999999999999999998888999999999876654
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCC--CcEEEEeeCCccccCccCC
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAES--GINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~--gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++..|+++++.|+ .++ +|+|++|+||+++|++...
T Consensus 146 ---~~~~~Y~~sK~a~~~~~~~la~e~-~~~~~~i~v~~v~pg~v~t~~~~~ 193 (251)
T PRK07069 146 ---PDYTAYNASKAAVASLTKSIALDC-ARRGLDVRCNSIHPTFIRTGIVDP 193 (251)
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHh-cccCCcEEEEEEeecccCCcchhH
Confidence 667789999999999999999998 444 5999999999999999754
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=247.46 Aligned_cols=213 Identities=25% Similarity=0.297 Sum_probs=176.3
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch-HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK-AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
..++++|++|||||++|||.++|++|+++|++|++++|+.+ .++...+.+... +.++.++.+|+++.++++++
T Consensus 41 ~~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~ 114 (290)
T PRK06701 41 SGKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKE------GVKCLLIPGDVSDEAFCKDA 114 (290)
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHH
Confidence 35778999999999999999999999999999999999864 344554444321 24788999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
++++.+.++++|++|||||... ..++.+.+.++|++.+++|+.+++.+++++++.|++ .|+||++||..++.+.
T Consensus 115 ~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~--~g~iV~isS~~~~~~~--- 189 (290)
T PRK06701 115 VEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQ--GSAIINTGSITGYEGN--- 189 (290)
T ss_pred HHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhh--CCeEEEEecccccCCC---
Confidence 9999999999999999999864 346778899999999999999999999999999954 4799999998876654
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc--hHHHHHHHHhhhhccc-C
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~--~~~~~~~~~~~p~~~~-~ 294 (298)
+....|+++|+|+.+|+++++.|+ .++||+|++|+||+++|++.... ++..+.+....|+.++ +
T Consensus 190 ------------~~~~~Y~~sK~a~~~l~~~la~~~-~~~gIrv~~i~pG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (290)
T PRK06701 190 ------------ETLIDYSATKGAIHAFTRSLAQSL-VQKGIRVNAVAPGPIWTPLIPSDFDEEKVSQFGSNTPMQRPGQ 256 (290)
T ss_pred ------------CCcchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCCCCCcccccccCHHHHHHHHhcCCcCCCcC
Confidence 566779999999999999999999 78899999999999999987542 2223333344565554 4
Q ss_pred CC
Q 022369 295 PQ 296 (298)
Q Consensus 295 pe 296 (298)
|+
T Consensus 257 ~~ 258 (290)
T PRK06701 257 PE 258 (290)
T ss_pred HH
Confidence 44
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=239.15 Aligned_cols=191 Identities=24% Similarity=0.267 Sum_probs=179.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
++++|||||+|||+++|+++..+|++|.++.|+.+++.+++++++-.... ..+.+..+|++|.+++..+++++.+.
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~----~~v~~~S~d~~~Y~~v~~~~~~l~~~ 109 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQV----EDVSYKSVDVIDYDSVSKVIEELRDL 109 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhcc----ceeeEeccccccHHHHHHHHhhhhhc
Confidence 78999999999999999999999999999999999999999998765322 23779999999999999999999999
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
.|.+|.+|||||...++.+++.+.+.++..|++|++|+++.+++.++.|+++. .|+|+.+||.++..+.
T Consensus 110 ~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i---------- 179 (331)
T KOG1210|consen 110 EGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGI---------- 179 (331)
T ss_pred cCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCc----------
Confidence 99999999999999999999999999999999999999999999999999876 7899999999988887
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
.++++|+++|+|+.+|++.+++|+ .++||+|..+.|+.++||.++.
T Consensus 180 -----~GysaYs~sK~alrgLa~~l~qE~-i~~~v~Vt~~~P~~~~tpGfE~ 225 (331)
T KOG1210|consen 180 -----YGYSAYSPSKFALRGLAEALRQEL-IKYGVHVTLYYPPDTLTPGFER 225 (331)
T ss_pred -----ccccccccHHHHHHHHHHHHHHHH-hhcceEEEEEcCCCCCCCcccc
Confidence 889999999999999999999999 8889999999999999997654
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=241.98 Aligned_cols=193 Identities=28% Similarity=0.333 Sum_probs=173.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++++++|||||++|||.++|++|+++|++|++++|+.+++++..+++.. +.++.++.+|++|++++++++++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~ 74 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-------GGRAIAVAADVSDEADVEAAVAA 74 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-------CCeEEEEECCCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999999888877666543 13688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+.++++|++|||||... ..++.+.+.+++++.+++|+.+++.+++.+++.|.+++.++||++||..+..+.
T Consensus 75 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 148 (251)
T PRK07231 75 ALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPR------ 148 (251)
T ss_pred HHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCC------
Confidence 9899999999999999854 445778899999999999999999999999999998888999999998765544
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|+.+|+++..+++.++.++ .+.||++++++||+++|++....
T Consensus 149 ---------~~~~~y~~sk~~~~~~~~~~a~~~-~~~~i~v~~i~pg~~~t~~~~~~ 195 (251)
T PRK07231 149 ---------PGLGWYNASKGAVITLTKALAAEL-GPDKIRVNAVAPVVVETGLLEAF 195 (251)
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEECccCCCcchhh
Confidence 677789999999999999999999 77799999999999999997654
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=246.81 Aligned_cols=183 Identities=28% Similarity=0.382 Sum_probs=164.1
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|++|||||++|||+++|++|+++|++|++++|+.++++.+. . ..+.++.+|++++++++++++++.+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~----~--------~~~~~~~~Dl~~~~~~~~~~~~~~~~ 69 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALA----A--------AGFTAVQLDVNDGAALARLAEELEAE 69 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----H--------CCCeEEEeeCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999987665442 1 13568899999999999999999999
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
++++|++|||||+...+++.+.+.+++++.+++|+.|++.+++.++|.|.++ .|+||++||..+..+.
T Consensus 70 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~~----------- 137 (274)
T PRK05693 70 HGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRS-RGLVVNIGSVSGVLVT----------- 137 (274)
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc-CCEEEEECCccccCCC-----------
Confidence 9999999999998877788888999999999999999999999999999764 5899999998876554
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|+++|+++..|+++++.|+ +++||+|++|+||+|+|++.+..
T Consensus 138 ----~~~~~Y~~sK~al~~~~~~l~~e~-~~~gi~v~~v~pg~v~t~~~~~~ 184 (274)
T PRK05693 138 ----PFAGAYCASKAAVHALSDALRLEL-APFGVQVMEVQPGAIASQFASNA 184 (274)
T ss_pred ----CCccHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEecCcccccccccc
Confidence 667789999999999999999999 78899999999999999987653
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=242.54 Aligned_cols=212 Identities=29% Similarity=0.382 Sum_probs=182.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+++|++|||||++|||.+++++|+++|++|++++|+.++.+++.+++.+. +.++.++.+|++|.++++++++.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~d~~~~~~~~~~~~~~ 74 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAK------GGNAQAFACDITDRDSVDTAVAAA 74 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 35799999999999999999999999999999999998888777766542 136889999999999999999999
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.+.++++|++|||+|.....++.+.+.+++++.+++|+.+++.+++++++.|++.+.++||++||..++.+.
T Consensus 75 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~~~-------- 146 (250)
T TIGR03206 75 EQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARVGS-------- 146 (250)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhccCC--------
Confidence 999999999999999876677788889999999999999999999999999988888999999998876554
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch------H-HHHHHHHhhhhccc-C
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP------K-IVQAAYHLIPYFIF-N 294 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~------~-~~~~~~~~~p~~~~-~ 294 (298)
+....|+++|+++.+++++++.|+ ...||+++.++||.++|++..... + ....+...+|.+++ +
T Consensus 147 -------~~~~~Y~~sK~a~~~~~~~la~~~-~~~~i~v~~v~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (250)
T TIGR03206 147 -------SGEAVYAACKGGLVAFSKTMAREH-ARHGITVNVVCPGPTDTALLDDICGGAENPEKLREAFTRAIPLGRLGQ 218 (250)
T ss_pred -------CCCchHHHHHHHHHHHHHHHHHHH-hHhCcEEEEEecCcccchhHHhhhhccCChHHHHHHHHhcCCccCCcC
Confidence 667789999999999999999999 778999999999999999865431 1 23344456666555 5
Q ss_pred CC
Q 022369 295 PQ 296 (298)
Q Consensus 295 pe 296 (298)
|+
T Consensus 219 ~~ 220 (250)
T TIGR03206 219 PD 220 (250)
T ss_pred HH
Confidence 44
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=239.99 Aligned_cols=195 Identities=21% Similarity=0.299 Sum_probs=169.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCC--HHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLS--LDSVVRF 138 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~--~~~v~~~ 138 (298)
.++++|+++||||++|||+++|++|+++|++|++++|+.+++++..+++.+.. +..+.++.+|+++ .+++.++
T Consensus 2 ~~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK08703 2 ATLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAG-----HPEPFAIRFDLMSAEEKEFEQF 76 (239)
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcC-----CCCcceEEeeecccchHHHHHH
Confidence 45788999999999999999999999999999999999998888877775431 1256788999976 5688999
Q ss_pred HHHHhccc-CCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 139 SEAWNGRL-GPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 139 ~~~~~~~~-g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
++++.+.+ +++|++|||||... ..++.+.+.++|++.+++|+.|++.++++++|.|.+.+.++||+++|..+..+.
T Consensus 77 ~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~-- 154 (239)
T PRK08703 77 AATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPK-- 154 (239)
T ss_pred HHHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccccCC--
Confidence 99998888 88999999999754 356788899999999999999999999999999998878999999998755443
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCC-CcEEEEeeCCccccCccCC
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAES-GINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~-gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|++||+++..|+++++.|+ .++ +|+|++|+||+|+|++...
T Consensus 155 -------------~~~~~Y~~sKaa~~~~~~~la~e~-~~~~~i~v~~v~pG~v~t~~~~~ 201 (239)
T PRK08703 155 -------------AYWGGFGASKAALNYLCKVAADEW-ERFGNLRANVLVPGPINSPQRIK 201 (239)
T ss_pred -------------CCccchHHhHHHHHHHHHHHHHHh-ccCCCeEEEEEecCcccCccccc
Confidence 677889999999999999999999 555 7999999999999998653
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=245.64 Aligned_cols=210 Identities=21% Similarity=0.188 Sum_probs=162.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHH----HHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSV----VRFSE 140 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v----~~~~~ 140 (298)
++++||||++|||+++|++|+++|++|++++| +.++++++.+++.... +.++.++.+|++|++++ +++++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~d~~~~~~~~~~~~~ 76 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARR-----PNSAVTCQADLSNSATLFSRCEAIID 76 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhcc-----CCceEEEEccCCCchhhHHHHHHHHH
Confidence 58999999999999999999999999999865 5677777766664321 13577899999999855 56667
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccCh-----------hhHHHHHhhhchHHHHHHHHHhhhhhcC------CCCeEE
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSK-----------DGYEEHMQVNHLAPALLSILLFPSLIRG------SPSRII 203 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~-----------~~~~~~~~vN~~~~~~l~~~~lp~m~~~------~~g~Iv 203 (298)
++.+.+|++|+||||||+....++.+.+. ++|++.+++|+.+++.++++++|+|+++ ..++||
T Consensus 77 ~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv 156 (267)
T TIGR02685 77 ACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIV 156 (267)
T ss_pred HHHHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEE
Confidence 77778899999999999866555544443 3589999999999999999999999653 246899
Q ss_pred EEcCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHH
Q 022369 204 NVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQA 283 (298)
Q Consensus 204 ~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~ 283 (298)
+++|..+..+ .+...+|++||+|+++|+++|+.|+ .++||+|++|+||++.|+.... .+..+.
T Consensus 157 ~~~s~~~~~~---------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~~~~~~~~~-~~~~~~ 219 (267)
T TIGR02685 157 NLCDAMTDQP---------------LLGFTMYTMAKHALEGLTRSAALEL-APLQIRVNGVAPGLSLLPDAMP-FEVQED 219 (267)
T ss_pred EehhhhccCC---------------CcccchhHHHHHHHHHHHHHHHHHH-hhhCeEEEEEecCCccCccccc-hhHHHH
Confidence 9999875443 3777889999999999999999999 7889999999999998763211 122233
Q ss_pred HHHhhhhc-cc-CCCC
Q 022369 284 AYHLIPYF-IF-NPQE 297 (298)
Q Consensus 284 ~~~~~p~~-~~-~pe~ 297 (298)
+....|+. ++ +|||
T Consensus 220 ~~~~~~~~~~~~~~~~ 235 (267)
T TIGR02685 220 YRRKVPLGQREASAEQ 235 (267)
T ss_pred HHHhCCCCcCCCCHHH
Confidence 33445653 33 5554
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=241.76 Aligned_cols=192 Identities=29% Similarity=0.325 Sum_probs=173.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|+++||||++|||.++|++|+++|++|++++|+.+..++..+++.. +.++.++++|++|++++++++++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~ 74 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAA-------GGRAFARQGDVGSAEAVEALVDF 74 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhc-------CCeEEEEEcCCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999998888777666541 24688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.++++++|++|||+|.....++.+.+.+++++.+++|+.+++.+++.+++.|++++.++||++||..+..+.
T Consensus 75 i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~------- 147 (252)
T PRK06138 75 VAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGG------- 147 (252)
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCC-------
Confidence 9999999999999999887777788899999999999999999999999999998888999999998766554
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++..++++++.|+ ..+||+|++++||.+.|++.+.
T Consensus 148 --------~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~ 193 (252)
T PRK06138 148 --------RGRAAYVASKGAIASLTRAMALDH-ATDGIRVNAVAPGTIDTPYFRR 193 (252)
T ss_pred --------CCccHHHHHHHHHHHHHHHHHHHH-HhcCeEEEEEEECCccCcchhh
Confidence 666789999999999999999999 7789999999999999998654
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=242.30 Aligned_cols=192 Identities=33% Similarity=0.472 Sum_probs=166.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH--HHHHHHHHHHhhcCCCCCccEEEEEcCCCC-HHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA--ANELIQKWQEEWSGKGLPLNIEAMELDLLS-LDSVVRF 138 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~-~~~v~~~ 138 (298)
.+.+|+++||||++|||+++|++|+++|++|+++.|+.+. .+...+... . . +. ..+.+..+|+++ .++++.+
T Consensus 2 ~~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~-~-~--~~-~~~~~~~~Dvs~~~~~v~~~ 76 (251)
T COG1028 2 DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIK-E-A--GG-GRAAAVAADVSDDEESVEAL 76 (251)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHH-h-c--CC-CcEEEEEecCCCCHHHHHHH
Confidence 4678999999999999999999999999999999888665 344443333 1 1 00 268888999998 9999999
Q ss_pred HHHHhcccCCccEEEEccCCCCC-CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSI-GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
++.+.+.+|++|++|||||+... .++.+.+.++|++.+++|+.|++.+++.+.|.|+++ +|||+||..+. ..
T Consensus 77 ~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~---~Iv~isS~~~~-~~--- 149 (251)
T COG1028 77 VAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQ---RIVNISSVAGL-GG--- 149 (251)
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhC---eEEEECCchhc-CC---
Confidence 99999999999999999999877 488999999999999999999999999888888843 99999999876 54
Q ss_pred ccccccccccCCCC-cccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch
Q 022369 218 EDMNVVSGRRKYTS-LMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278 (298)
Q Consensus 218 ~~~~~~~~~~~~~~-~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~ 278 (298)
+. ..+|++||+|+.+|+++++.|+ .++||++++|+||+++|++.+...
T Consensus 150 ------------~~~~~~Y~~sK~al~~~~~~l~~e~-~~~gi~v~~v~PG~~~t~~~~~~~ 198 (251)
T COG1028 150 ------------PPGQAAYAASKAALIGLTKALALEL-APRGIRVNAVAPGYIDTPMTAALE 198 (251)
T ss_pred ------------CCCcchHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEEeccCCCcchhhhh
Confidence 44 4889999999999999999999 888999999999999999987643
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=239.05 Aligned_cols=190 Identities=24% Similarity=0.301 Sum_probs=171.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++|+++||||++|||+++|++|+++|++|++++|++++.+++.+++.+. +.++.++.+|+++++++.++++++.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 78 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST------GVKAAAYSIDLSNPEAIAPGIAELL 78 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC------CCcEEEEEccCCCHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999998887777666542 2368899999999999999999999
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
++++++|++|||||.....++.+.+.+++++.+++|+.+++.+++.++|.|.+++.++||++||..+..+.
T Consensus 79 ~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 149 (241)
T PRK07454 79 EQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAF--------- 149 (241)
T ss_pred HHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCC---------
Confidence 99999999999999877667788899999999999999999999999999998888999999998765443
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|+++|+++.+++++++.|+ .+.||++++|+||+++|++.+
T Consensus 150 ------~~~~~Y~~sK~~~~~~~~~~a~e~-~~~gi~v~~i~pg~i~t~~~~ 194 (241)
T PRK07454 150 ------PQWGAYCVSKAALAAFTKCLAEEE-RSHGIRVCTITLGAVNTPLWD 194 (241)
T ss_pred ------CCccHHHHHHHHHHHHHHHHHHHh-hhhCCEEEEEecCcccCCccc
Confidence 667789999999999999999999 778999999999999999865
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=228.93 Aligned_cols=205 Identities=25% Similarity=0.336 Sum_probs=183.4
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
...+|-++|||||.||+|++.|.+|+++|+.|++.|--..+.++..+++. .++.+.+.|++++++++..+.
T Consensus 5 rs~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakelg---------~~~vf~padvtsekdv~aala 75 (260)
T KOG1199|consen 5 RSTKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKELG---------GKVVFTPADVTSEKDVRAALA 75 (260)
T ss_pred hhhcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHhC---------CceEEeccccCcHHHHHHHHH
Confidence 35678899999999999999999999999999999998888888887763 489999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCC------CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC------CCCeEEEEcCC
Q 022369 141 AWNGRLGPLHVLINNAGIFSI------GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG------SPSRIINVNSV 208 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~------~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~------~~g~Iv~isS~ 208 (298)
..+.+||++|.+|||||+... +.-...+.|+|++++++|++|+|+.++...-.|-+. ++|.|||..|+
T Consensus 76 ~ak~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasv 155 (260)
T KOG1199|consen 76 KAKAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASV 155 (260)
T ss_pred HHHhhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeecee
Confidence 999999999999999998642 223467899999999999999999999999999753 46899999999
Q ss_pred ccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHH-h
Q 022369 209 MHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYH-L 287 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~-~ 287 (298)
+++.+. .++++|++||.++.+++--+++++ ...|||+++|.||..+||+...+|+....+.. .
T Consensus 156 aafdgq---------------~gqaaysaskgaivgmtlpiardl-a~~gir~~tiapglf~tpllsslpekv~~fla~~ 219 (260)
T KOG1199|consen 156 AAFDGQ---------------TGQAAYSASKGAIVGMTLPIARDL-AGDGIRFNTIAPGLFDTPLLSSLPEKVKSFLAQL 219 (260)
T ss_pred eeecCc---------------cchhhhhcccCceEeeechhhhhc-ccCceEEEeecccccCChhhhhhhHHHHHHHHHh
Confidence 998887 778899999999999999999999 88999999999999999999999988776554 5
Q ss_pred hhh
Q 022369 288 IPY 290 (298)
Q Consensus 288 ~p~ 290 (298)
+|+
T Consensus 220 ipf 222 (260)
T KOG1199|consen 220 IPF 222 (260)
T ss_pred CCC
Confidence 554
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=239.11 Aligned_cols=210 Identities=24% Similarity=0.263 Sum_probs=172.1
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEE-cCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAV-RNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
|+++||||++|||.++|+.|+++|++|+++. |+++++++..+++... +.++..++||++++++++++++++.+
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~ 76 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAA------GGRACVVAGDVANEADVIAMFDAVQS 76 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc------CCcEEEEEeccCCHHHHHHHHHHHHH
Confidence 7899999999999999999999999998764 6777777776666542 23788999999999999999999999
Q ss_pred ccCCccEEEEccCCCCC-CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC---CCeEEEEcCCccccCCCCcccc
Q 022369 145 RLGPLHVLINNAGIFSI-GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS---PSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 145 ~~g~idilVnnag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~---~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
.++++|++|||||+... .++.+.+.+++++.+++|+.+++.+++.+++.|..++ .|+||++||..+..+.+
T Consensus 77 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~----- 151 (248)
T PRK06947 77 AFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSP----- 151 (248)
T ss_pred hcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCCC-----
Confidence 89999999999998653 4567889999999999999999999999999997654 57899999988766541
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC--chHHHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD--LPKIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~--~~~~~~~~~~~~p~~~~-~pe 296 (298)
..+..|++||+++++|+++++.|+ .+.||+|+.|+||+++|++... .++..+......|+.+. +||
T Consensus 152 ---------~~~~~Y~~sK~~~~~~~~~la~~~-~~~~i~v~~i~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~e 220 (248)
T PRK06947 152 ---------NEYVDYAGSKGAVDTLTLGLAKEL-GPHGVRVNAVRPGLIETEIHASGGQPGRAARLGAQTPLGRAGEAD 220 (248)
T ss_pred ---------CCCcccHhhHHHHHHHHHHHHHHh-hhhCcEEEEEeccCcccccccccCCHHHHHHHhhcCCCCCCcCHH
Confidence 124579999999999999999999 7789999999999999998653 23322222234455443 444
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=241.35 Aligned_cols=190 Identities=27% Similarity=0.406 Sum_probs=170.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++++++|||||++|||.++|++|+++|++|++++|+.+++++..+++.. +.++.++.+|++|+++++++++.
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~~ 74 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPY-------PGRHRWVVADLTSEAGREAVLAR 74 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhc-------CCceEEEEccCCCHHHHHHHHHH
Confidence 45789999999999999999999999999999999998888877666521 13788999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+ ++++|++|||||.....++.+.+.+++++.+++|+.|++.+++.++|+|.+++.|+||++||..+..+.
T Consensus 75 ~~~-~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------- 146 (263)
T PRK09072 75 ARE-MGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGY------- 146 (263)
T ss_pred HHh-cCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCC-------
Confidence 876 789999999999877777888899999999999999999999999999998878999999998766554
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
++...|+++|+++.+++++++.|+ .+.||+|++|+||+++|++..
T Consensus 147 --------~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~Pg~~~t~~~~ 191 (263)
T PRK09072 147 --------PGYASYCASKFALRGFSEALRREL-ADTGVRVLYLAPRATRTAMNS 191 (263)
T ss_pred --------CCccHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCcccccchh
Confidence 667789999999999999999999 788999999999999999854
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=241.24 Aligned_cols=185 Identities=26% Similarity=0.367 Sum_probs=166.3
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||.++|++|+++|++|++++|+. +.. .+.++.++++|++++++++++++
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~---------~~~------~~~~~~~~~~D~~~~~~~~~~~~ 68 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF---------LTQ------EDYPFATFVLDVSDAAAVAQVCQ 68 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch---------hhh------cCCceEEEEecCCCHHHHHHHHH
Confidence 347789999999999999999999999999999999985 111 12368899999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.++++|++|||+|.....++.+.+.+++++.+++|+.+++.++++++|.|++++.|+||++||..+..+.
T Consensus 69 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~~------ 142 (252)
T PRK08220 69 RLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVPR------ 142 (252)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccCC------
Confidence 99999999999999999887778888899999999999999999999999999998888999999998754443
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++.+|+++++.|+ .++||+|++++||+++|++...
T Consensus 143 ---------~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~i~pg~v~t~~~~~ 188 (252)
T PRK08220 143 ---------IGMAAYGASKAALTSLAKCVGLEL-APYGVRCNVVSPGSTDTDMQRT 188 (252)
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHh-hHhCeEEEEEecCcCcchhhhh
Confidence 667889999999999999999999 7889999999999999998654
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=236.22 Aligned_cols=194 Identities=25% Similarity=0.399 Sum_probs=174.5
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++++++||||++|||+++|++|+++|++|++++|+.+++++..+++... +.++.++.+|++++++++++++
T Consensus 3 ~~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~ 76 (239)
T PRK07666 3 QSLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY------GVKVVIATADVSDYEEVTAAIE 76 (239)
T ss_pred ccCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh------CCeEEEEECCCCCHHHHHHHHH
Confidence 3467899999999999999999999999999999999998888877776432 2378899999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.++++++|++|||||.....++.+.+.+++++.+++|+.+++.++++++|.|.+++.+++|++||..+..+.
T Consensus 77 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~------ 150 (239)
T PRK07666 77 QLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGA------ 150 (239)
T ss_pred HHHHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCC------
Confidence 99999999999999999877667778899999999999999999999999999998888999999998766554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++..++++++.|+ .+.||++++|+||.+.|++...
T Consensus 151 ---------~~~~~Y~~sK~a~~~~~~~~a~e~-~~~gi~v~~v~pg~v~t~~~~~ 196 (239)
T PRK07666 151 ---------AVTSAYSASKFGVLGLTESLMQEV-RKHNIRVTALTPSTVATDMAVD 196 (239)
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCcccCcchhh
Confidence 666789999999999999999999 7789999999999999998653
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=239.84 Aligned_cols=192 Identities=26% Similarity=0.304 Sum_probs=171.1
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCE-EEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAH-VVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~-Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..+++|+++||||++|||.+++++|+++|++ |++++|+.++.+...+++.+. +.++.++.+|+++++++.+++
T Consensus 2 ~~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~ 75 (260)
T PRK06198 2 GRLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEAL------GAKAVFVQADLSDVEDCRRVV 75 (260)
T ss_pred CCCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHHH
Confidence 3467899999999999999999999999998 999999988887776666331 246888999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~ 218 (298)
+.+.+++|++|++|||||.....++.+.+.++|++.+++|+.+++.+++++++.|.+++ .|+||++||..++.+.
T Consensus 76 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~---- 151 (260)
T PRK06198 76 AAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHGGQ---- 151 (260)
T ss_pred HHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCC----
Confidence 99999999999999999988777777889999999999999999999999999998754 5899999998766544
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
+....|+++|+++.+|+++++.|+ ...||+|++|+||++.|++.
T Consensus 152 -----------~~~~~Y~~sK~a~~~~~~~~a~e~-~~~~i~v~~i~pg~~~t~~~ 195 (260)
T PRK06198 152 -----------PFLAAYCASKGALATLTRNAAYAL-LRNRIRVNGLNIGWMATEGE 195 (260)
T ss_pred -----------CCcchhHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeccccCcch
Confidence 667789999999999999999999 78899999999999999974
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=240.56 Aligned_cols=190 Identities=22% Similarity=0.281 Sum_probs=160.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc----hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL----KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
++++|+++||||++|||.++|+.|+++|++|++++++. +.+++..+++... +.++.++++|+++++++++
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~ 78 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAA------GAKAVAFQADLTTAAAVEK 78 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHh------CCcEEEEecCcCCHHHHHH
Confidence 46789999999999999999999999999977776543 3444444444332 2368889999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEE-cCCccccCCCC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINV-NSVMHYVGFVD 216 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~i-sS~~~~~~~~~ 216 (298)
+++++.+.++++|++|||||+....++.+.+.++|++.+++|+.+++.++++++|.|.+ .|+|+++ ||..+..
T Consensus 79 ~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~--~~~iv~~~ss~~~~~---- 152 (257)
T PRK12744 79 LFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLND--NGKIVTLVTSLLGAF---- 152 (257)
T ss_pred HHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhcc--CCCEEEEecchhccc----
Confidence 99999999999999999999877777888899999999999999999999999999975 3678876 4543321
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
.+....|++||+|+++|+++++.|+ .++||+|++++||++.|++...
T Consensus 153 ------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~v~pg~v~t~~~~~ 199 (257)
T PRK12744 153 ------------TPFYSAYAGSKAPVEHFTRAASKEF-GARGISVTAVGPGPMDTPFFYP 199 (257)
T ss_pred ------------CCCcccchhhHHHHHHHHHHHHHHh-CcCceEEEEEecCccccchhcc
Confidence 1566789999999999999999999 7789999999999999998643
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=238.03 Aligned_cols=210 Identities=26% Similarity=0.296 Sum_probs=171.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+|++|||||++|||.++|++|+++|++|+++++ ++++.++..+.+... +.++.++++|++|.++++++++++.
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~ 75 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQ------GGEALAVAADVADEADVLRLFEAVD 75 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhC------CCcEEEEEeccCCHHHHHHHHHHHH
Confidence 579999999999999999999999999998874 555566555555432 1367889999999999999999999
Q ss_pred cccCCccEEEEccCCCCC-CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC---CCeEEEEcCCccccCCCCccc
Q 022369 144 GRLGPLHVLINNAGIFSI-GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS---PSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~---~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+.+|++|+||||||.... .++.+.+.++|++.+++|+.+++.+++++++.|.++. +|+||++||..+..+.
T Consensus 76 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~----- 150 (248)
T PRK06123 76 RELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGS----- 150 (248)
T ss_pred HHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCC-----
Confidence 999999999999998653 4567889999999999999999999999999997642 5799999998766554
Q ss_pred ccccccccCCCC-cccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC--chHHHHHHHHhhhhccc-CC
Q 022369 220 MNVVSGRRKYTS-LMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD--LPKIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 220 ~~~~~~~~~~~~-~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~--~~~~~~~~~~~~p~~~~-~p 295 (298)
+. ...|+++|+++++|+++++.|+ .++||+|++|+||.+.|++... .++..+......|+.++ +|
T Consensus 151 ----------~~~~~~Y~~sKaa~~~~~~~la~~~-~~~~i~v~~i~pg~v~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 219 (248)
T PRK06123 151 ----------PGEYIDYAASKGAIDTMTIGLAKEV-AAEGIRVNAVRPGVIYTEIHASGGEPGRVDRVKAGIPMGRGGTA 219 (248)
T ss_pred ----------CCCccchHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCcccCchhhccCCHHHHHHHHhcCCCCCCcCH
Confidence 33 3569999999999999999999 7889999999999999998542 23333334445566554 44
Q ss_pred C
Q 022369 296 Q 296 (298)
Q Consensus 296 e 296 (298)
|
T Consensus 220 ~ 220 (248)
T PRK06123 220 E 220 (248)
T ss_pred H
Confidence 3
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=237.96 Aligned_cols=190 Identities=24% Similarity=0.315 Sum_probs=164.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
...+|++|||||++|||+++|++|+++|++|+++++ +.+.++.+.+++... +.++.++++|++|.+++.++++
T Consensus 6 ~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~d~~~~~~~~~ 79 (258)
T PRK09134 6 MAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRAL------GRRAVALQADLADEAEVRALVA 79 (258)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCHHHHHHHHH
Confidence 356899999999999999999999999999988776 455666666665432 2368899999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.+|++|++|||||.....++.+.+.+++++.+++|+.+++.+++++++.|.++..|+||+++|..++.+.
T Consensus 80 ~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~------ 153 (258)
T PRK09134 80 RASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLN------ 153 (258)
T ss_pred HHHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCC------
Confidence 99998999999999999877777888899999999999999999999999999998778999999987544332
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
|....|++||+++++++++++.|+ .+. |+|++|+||++.|+..
T Consensus 154 ---------p~~~~Y~~sK~a~~~~~~~la~~~-~~~-i~v~~i~PG~v~t~~~ 196 (258)
T PRK09134 154 ---------PDFLSYTLSKAALWTATRTLAQAL-APR-IRVNAIGPGPTLPSGR 196 (258)
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHh-cCC-cEEEEeecccccCCcc
Confidence 566789999999999999999998 554 9999999999998753
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=236.04 Aligned_cols=206 Identities=25% Similarity=0.366 Sum_probs=172.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch-HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK-AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
|+++||||++|||.++|++|+++|++|++++|+.+ ..++..+.... .+.++.++.+|++++++++++++++.+
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~D~~~~~~v~~~~~~~~~ 76 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGF------TEDQVRLKELDVTDTEECAEALAEIEE 76 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhc------cCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999854 12222222111 124688999999999999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
+++++|++|||+|.....++.+.+.++|++.+++|+.+++++++.++|.|++++.++||++||..+..+.
T Consensus 77 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~---------- 146 (245)
T PRK12824 77 EEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQ---------- 146 (245)
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccCC----------
Confidence 9999999999999877777888899999999999999999999999999998888999999998765543
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHHhhhhccc
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYHLIPYFIF 293 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~p~~~~ 293 (298)
+....|+++|+++.+++++++.|+ .+.||++++++||.+.|++.+...+. .+.+....|+..+
T Consensus 147 -----~~~~~Y~~sK~a~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~ 210 (245)
T PRK12824 147 -----FGQTNYSAAKAGMIGFTKALASEG-ARYGITVNCIAPGYIATPMVEQMGPEVLQSIVNQIPMKRL 210 (245)
T ss_pred -----CCChHHHHHHHHHHHHHHHHHHHH-HHhCeEEEEEEEcccCCcchhhcCHHHHHHHHhcCCCCCC
Confidence 667789999999999999999999 77899999999999999998765433 2233344555444
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=235.48 Aligned_cols=209 Identities=25% Similarity=0.352 Sum_probs=177.1
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
|++|||||++|||+++|++|+++|++|++++| +.+..++..+++... +.++.++.+|++|+++++++++++.+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGAL------GFDFRVVEGDVSSFESCKAAVAKVEA 74 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhh------CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999988 666666655554331 23788999999999999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
.++++|++|||||.....++.+.+.+++++.+++|+.+++.+++.++|.|++++.++||++||..+..+.
T Consensus 75 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~~---------- 144 (242)
T TIGR01829 75 ELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKGQ---------- 144 (242)
T ss_pred HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCC----------
Confidence 9999999999999877677788899999999999999999999999999998888999999998766554
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH-HHHHHHHhhhhccc-CCC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK-IVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~-~~~~~~~~~p~~~~-~pe 296 (298)
++...|+++|+++..++++++.|+ ...||++++++||+++|++.+...+ ....+....|..++ +|+
T Consensus 145 -----~~~~~y~~sk~a~~~~~~~la~~~-~~~~i~v~~i~pg~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (242)
T TIGR01829 145 -----FGQTNYSAAKAGMIGFTKALAQEG-ATKGVTVNTISPGYIATDMVMAMREDVLNSIVAQIPVGRLGRPE 212 (242)
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEeeCCCcCccccccchHHHHHHHhcCCCCCCcCHH
Confidence 567789999999999999999999 7789999999999999999876533 33333334565554 443
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=239.79 Aligned_cols=195 Identities=22% Similarity=0.283 Sum_probs=172.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||.++|++|+++|++|++++|+.++.+...+++..... +.++.++.+|++|++++++++++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~~~~~~~~~~~~ 79 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKG----AGAVRYEPADVTDEDQVARAVDA 79 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccC----CCceEEEEcCCCCHHHHHHHHHH
Confidence 36789999999999999999999999999999999998888877766654211 23688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+.++++|++|||||... ..++.+.+.++++..+++|+.+++.+++++++.|.+++.|+||++||..+..+.
T Consensus 80 ~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~------ 153 (276)
T PRK05875 80 ATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTH------ 153 (276)
T ss_pred HHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCC------
Confidence 9999999999999999753 346677889999999999999999999999999998888999999998755443
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|++++.++++++.|+ ...||++++|+||+++|++...
T Consensus 154 ---------~~~~~Y~~sK~a~~~~~~~~~~~~-~~~~i~v~~i~Pg~v~t~~~~~ 199 (276)
T PRK05875 154 ---------RWFGAYGVTKSAVDHLMKLAADEL-GPSWVRVNSIRPGLIRTDLVAP 199 (276)
T ss_pred ---------CCCcchHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCccCCccccc
Confidence 667889999999999999999999 7789999999999999998764
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=238.16 Aligned_cols=199 Identities=25% Similarity=0.317 Sum_probs=163.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|+++||||++|||.++|++|+++|++|++++|+..... ..++.++.+|++++ +++
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~---------------~~~~~~~~~D~~~~------~~~ 60 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDL---------------SGNFHFLQLDLSDD------LEP 60 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCccccc---------------CCcEEEEECChHHH------HHH
Confidence 467899999999999999999999999999999999854210 12678899999988 344
Q ss_pred HhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+.++++|++|||||+.. ..++.+.+.+++++.+++|+.++++++++++|.|++++.|+||++||..+..+.
T Consensus 61 ~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 134 (235)
T PRK06550 61 LFDWVPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAG------ 134 (235)
T ss_pred HHHhhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC------
Confidence 4445689999999999753 356778899999999999999999999999999998888999999999866554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC-ch-H-HHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD-LP-K-IVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~-~~-~-~~~~~~~~~p~~~~-~pe 296 (298)
+....|+++|+++.+++++++.|+ .++||+|++|+||+++|++... .+ + ..+......|+.++ +||
T Consensus 135 ---------~~~~~Y~~sK~a~~~~~~~la~~~-~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (235)
T PRK06550 135 ---------GGGAAYTASKHALAGFTKQLALDY-AKDGIQVFGIAPGAVKTPMTAADFEPGGLADWVARETPIKRWAEPE 204 (235)
T ss_pred ---------CCCcccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCCccCcccccccCchHHHHHHhccCCcCCCCCHH
Confidence 667789999999999999999999 7789999999999999998643 22 1 22233345677666 665
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 205 ~ 205 (235)
T PRK06550 205 E 205 (235)
T ss_pred H
Confidence 4
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-32 Score=240.52 Aligned_cols=191 Identities=28% Similarity=0.413 Sum_probs=171.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++|++|||||++|||.++|+.|+++|++|++++|+.++++++.+++.... .+.++.++.+|++|++++++ ++++.
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~D~~d~~~~~~-~~~~~ 76 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLN----LQQNIKVQQLDVTDQNSIHN-FQLVL 76 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC----CCCceeEEecCCCCHHHHHH-HHHHH
Confidence 57899999999999999999999999999999999988888766654421 12368899999999999999 89998
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+.++++|++|||||........+.+.+++++.+++|+.+++.+++.++|.|++++.++||++||..+..+.
T Consensus 77 ~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~--------- 147 (280)
T PRK06914 77 KEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGF--------- 147 (280)
T ss_pred HhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCC---------
Confidence 88999999999999887777888899999999999999999999999999998888999999998766554
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
++...|+++|+++.+|+++++.|+ .++||++++++||.++|++..
T Consensus 148 ------~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~ 192 (280)
T PRK06914 148 ------PGLSPYVSSKYALEGFSESLRLEL-KPFGIDVALIEPGSYNTNIWE 192 (280)
T ss_pred ------CCCchhHHhHHHHHHHHHHHHHHh-hhhCCEEEEEecCCcccchhh
Confidence 667789999999999999999999 788999999999999999764
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=237.98 Aligned_cols=193 Identities=24% Similarity=0.307 Sum_probs=173.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||.+++++|+++|++|++++|++++.++..+++.+. +.++.++++|++|.+++++++++
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~ 77 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA------GGKAIGVAMDVTNEDAVNAGIDK 77 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc------CceEEEEECCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999888888877542 23688899999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhh-hcCCCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSL-IRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m-~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+.++++|++|||||.....+..+.+.+++++.+++|+.+++.+++.+++.| ++.+.++||++||..+..+.
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~~------ 151 (262)
T PRK13394 78 VAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEAS------ 151 (262)
T ss_pred HHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCCC------
Confidence 99999999999999998776777788899999999999999999999999999 77777899999998655443
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++.+++++++.++ .+.||++++++||.+.|++.+.
T Consensus 152 ---------~~~~~y~~sk~a~~~~~~~la~~~-~~~~i~v~~v~pg~v~~~~~~~ 197 (262)
T PRK13394 152 ---------PLKSAYVTAKHGLLGLARVLAKEG-AKHNVRSHVVCPGFVRTPLVDK 197 (262)
T ss_pred ---------CCCcccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcccchhhhh
Confidence 666789999999999999999999 7789999999999999998643
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=234.89 Aligned_cols=172 Identities=15% Similarity=0.121 Sum_probs=147.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
.++||||++|||+++|++|+++|++|++++|+.+++++..+++ .+..+++|++|+++++++++++.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~-----------~~~~~~~D~~~~~~v~~~~~~~~~-- 68 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKEL-----------DVDAIVCDNTDPASLEEARGLFPH-- 68 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----------cCcEEecCCCCHHHHHHHHHHHhh--
Confidence 4899999999999999999999999999999988877765543 245788999999999999888753
Q ss_pred CCccEEEEccCCCCC------CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 147 GPLHVLINNAGIFSI------GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 147 g~idilVnnag~~~~------~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++|++|||||.... .++.+ +.++|++.+++|+.++++++++++|.|++ +|+|||+||.+ .
T Consensus 69 -~id~lv~~ag~~~~~~~~~~~~~~~-~~~~~~~~~~~N~~~~~~~~~~~~~~~~~--~g~Iv~isS~~----~------ 134 (223)
T PRK05884 69 -HLDTIVNVPAPSWDAGDPRTYSLAD-TANAWRNALDATVLSAVLTVQSVGDHLRS--GGSIISVVPEN----P------ 134 (223)
T ss_pred -cCcEEEECCCccccCCCCcccchhc-CHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCeEEEEecCC----C------
Confidence 69999999985321 12333 57899999999999999999999999965 48999999964 1
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+++|++.+
T Consensus 135 ---------~~~~~Y~asKaal~~~~~~la~e~-~~~gI~v~~v~PG~v~t~~~~ 179 (223)
T PRK05884 135 ---------PAGSAEAAIKAALSNWTAGQAAVF-GTRGITINAVACGRSVQPGYD 179 (223)
T ss_pred ---------CCccccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCccCchhhh
Confidence 445679999999999999999999 888999999999999999754
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-32 Score=234.78 Aligned_cols=212 Identities=25% Similarity=0.352 Sum_probs=176.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++++++|||||++|||.++|+.|+++|++|++++|+.+++++..++++.. +.++..+++|++++++++++++.
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 75 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL------GTEVRGYAANVTDEEDVEATFAQ 75 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHHH
Confidence 367899999999999999999999999999999999998888877776542 24788899999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCC---------CccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEP---------QKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVMHY 211 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~---------~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~~~ 211 (298)
+.+.++++|++|||||....... .+.+.++++..+++|+.+++.+++.++|.|.++ ..|+||++||...
T Consensus 76 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~- 154 (253)
T PRK08217 76 IAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIAR- 154 (253)
T ss_pred HHHHcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccc-
Confidence 98888999999999997543221 567889999999999999999999999999875 4678999998642
Q ss_pred cCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHHhhhh
Q 022369 212 VGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYHLIPY 290 (298)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~p~ 290 (298)
.+. +....|+++|+++++++++|+.|+ .++||++++++||.++|++.+...+. .+.+....|.
T Consensus 155 ~~~---------------~~~~~Y~~sK~a~~~l~~~la~~~-~~~~i~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~ 218 (253)
T PRK08217 155 AGN---------------MGQTNYSASKAGVAAMTVTWAKEL-ARYGIRVAAIAPGVIETEMTAAMKPEALERLEKMIPV 218 (253)
T ss_pred cCC---------------CCCchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEeeCCCcCccccccCHHHHHHHHhcCCc
Confidence 232 567789999999999999999999 77899999999999999998765433 3333445565
Q ss_pred ccc-CCC
Q 022369 291 FIF-NPQ 296 (298)
Q Consensus 291 ~~~-~pe 296 (298)
..+ +||
T Consensus 219 ~~~~~~~ 225 (253)
T PRK08217 219 GRLGEPE 225 (253)
T ss_pred CCCcCHH
Confidence 544 544
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=266.96 Aligned_cols=196 Identities=26% Similarity=0.299 Sum_probs=174.0
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
...+++||+++||||++|||+++|++|+++|++|++++|++++++++.+++... +.++.++++|++|.++++++
T Consensus 365 ~~~~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~~~~~ 438 (657)
T PRK07201 365 LRGPLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAK------GGTAHAYTCDLTDSAAVDHT 438 (657)
T ss_pred cccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHH
Confidence 344678999999999999999999999999999999999999988888777542 23788999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCcc--ChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKF--SKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~--~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
++++.+.+|++|++|||||+.....+.+. +.+++++.+++|+.|++.+++.++|.|++++.|+||++||.+++.+.
T Consensus 439 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 516 (657)
T PRK07201 439 VKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQTNA-- 516 (657)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCC--
Confidence 99999999999999999998654443332 25789999999999999999999999999888999999999866554
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|++||+++++|+++++.|+ .++||+|++|+||+|+|+|...
T Consensus 517 -------------~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~v~pg~v~T~~~~~ 562 (657)
T PRK07201 517 -------------PRFSAYVASKAALDAFSDVAASET-LSDGITFTTIHMPLVRTPMIAP 562 (657)
T ss_pred -------------CCcchHHHHHHHHHHHHHHHHHHH-HhhCCcEEEEECCcCcccccCc
Confidence 677889999999999999999999 7789999999999999999754
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-32 Score=235.88 Aligned_cols=191 Identities=27% Similarity=0.357 Sum_probs=174.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+++|++|||||+++||.++|++|+++|++|++++|+.+++++..+++... +.++..+.+|++|+++++++++++
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~~ 75 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKA------GGKAIGVAMDVTDEEAINAGIDYA 75 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999888887776542 247889999999999999999999
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.+.++.+|++|||||.....+..+.+.++++..+++|+.+++.+++.+++.|++++.++||++||..+..+.
T Consensus 76 ~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~-------- 147 (258)
T PRK12429 76 VETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGS-------- 147 (258)
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCC--------
Confidence 999999999999999887777888899999999999999999999999999999888999999998766554
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
++...|+++|+++.++++.++.|+ .+.||+|++++||.+.|++..
T Consensus 148 -------~~~~~y~~~k~a~~~~~~~l~~~~-~~~~i~v~~~~pg~v~~~~~~ 192 (258)
T PRK12429 148 -------AGKAAYVSAKHGLIGLTKVVALEG-ATHGVTVNAICPGYVDTPLVR 192 (258)
T ss_pred -------CCcchhHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCCCcchhhh
Confidence 677889999999999999999999 778999999999999999864
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=239.20 Aligned_cols=187 Identities=24% Similarity=0.357 Sum_probs=167.3
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.|++|||||++|||+++|++|+++|++|++++|+++.++++.+... .++.++.+|++|.++++++++++.+
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYG---------DRLWVLQLDVTDSAAVRAVVDRAFA 72 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcc---------CceEEEEccCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999877666544321 2678899999999999999999988
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
.++++|+||||||....++..+.+.+++++.+++|+.+++.++++++|+|++++.++||++||..+..+.
T Consensus 73 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~---------- 142 (276)
T PRK06482 73 ALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIAY---------- 142 (276)
T ss_pred HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccccCC----------
Confidence 8899999999999987777888899999999999999999999999999998888999999998754433
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
++...|++||+++++|+++++.|+ .++||+++.++||.+.|++...
T Consensus 143 -----~~~~~Y~~sK~a~~~~~~~l~~~~-~~~gi~v~~v~pg~~~t~~~~~ 188 (276)
T PRK06482 143 -----PGFSLYHATKWGIEGFVEAVAQEV-APFGIEFTIVEPGPARTNFGAG 188 (276)
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHh-hccCcEEEEEeCCccccCCccc
Confidence 677889999999999999999999 7789999999999999998653
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=237.12 Aligned_cols=193 Identities=25% Similarity=0.365 Sum_probs=171.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+.++|+++||||++|||+++|++|+++|++|++++|+.+.+++..+++... +.++.++.+|+++++++.+++++
T Consensus 7 ~~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~ 80 (274)
T PRK07775 7 HPDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRAD------GGEAVAFPLDVTDPDSVKSFVAQ 80 (274)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHH
Confidence 466789999999999999999999999999999999988877766655432 13688899999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+.++++|++|||||.....+..+.+.+++++.+++|+.+++++++.++|.|.+++.|+||++||..++.+.
T Consensus 81 ~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~~~------- 153 (274)
T PRK07775 81 AEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALRQR------- 153 (274)
T ss_pred HHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcCCC-------
Confidence 9998999999999999877667778889999999999999999999999999988888999999998765544
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|++++++++.++.|+ .+.||++++++||+++|++...
T Consensus 154 --------~~~~~Y~~sK~a~~~l~~~~~~~~-~~~gi~v~~v~pG~~~t~~~~~ 199 (274)
T PRK07775 154 --------PHMGAYGAAKAGLEAMVTNLQMEL-EGTGVRASIVHPGPTLTGMGWS 199 (274)
T ss_pred --------CCcchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeCCcccCccccc
Confidence 666789999999999999999999 7789999999999999997543
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=234.26 Aligned_cols=192 Identities=34% Similarity=0.458 Sum_probs=168.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEE-EcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+++++++++||||++|||.++|++|+++|++|++. +|+.+++++..+++... +.++.++.+|++|++++.+++
T Consensus 2 ~~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~d~~~i~~~~ 75 (254)
T PRK12746 2 KNLDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESN------GGKAFLIEADLNSIDGVKKLV 75 (254)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCcEEEEEcCcCCHHHHHHHH
Confidence 35678999999999999999999999999999775 78887777776665431 136889999999999999999
Q ss_pred HHHhccc------CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccC
Q 022369 140 EAWNGRL------GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213 (298)
Q Consensus 140 ~~~~~~~------g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~ 213 (298)
+++.+++ +++|++|||||.....++.+.+.+.|++.+++|+.+++++++.+++.|.+ .|++|++||..++.+
T Consensus 76 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~~v~~sS~~~~~~ 153 (254)
T PRK12746 76 EQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRA--EGRVINISSAEVRLG 153 (254)
T ss_pred HHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhc--CCEEEEECCHHhcCC
Confidence 9998876 47999999999877777788899999999999999999999999999865 369999999876554
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
. ++...|++||++++.++++++.|+ .+.||+|++++||++.|++.+.
T Consensus 154 ~---------------~~~~~Y~~sK~a~~~~~~~~~~~~-~~~~i~v~~v~pg~~~t~~~~~ 200 (254)
T PRK12746 154 F---------------TGSIAYGLSKGALNTMTLPLAKHL-GERGITVNTIMPGYTKTDINAK 200 (254)
T ss_pred C---------------CCCcchHhhHHHHHHHHHHHHHHH-hhcCcEEEEEEECCccCcchhh
Confidence 4 677789999999999999999999 7889999999999999998754
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=263.34 Aligned_cols=193 Identities=24% Similarity=0.283 Sum_probs=172.6
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+..++++|++|||||++|||+++|++|+++|++|++++|+.++++...+++...... ..+..+++|++|+++++++
T Consensus 408 ~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~----~~~~~v~~Dvtd~~~v~~a 483 (676)
T TIGR02632 408 KEKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGA----GRAVALKMDVTDEQAVKAA 483 (676)
T ss_pred CCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCC----CcEEEEECCCCCHHHHHHH
Confidence 345688999999999999999999999999999999999998888887776643221 2578899999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~ 217 (298)
++++.+.+|++|++|||||+....++.+.+.++|+..+++|+.+++.+++.+++.|++++ +|+||++||..+..+.
T Consensus 484 ~~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~--- 560 (676)
T TIGR02632 484 FADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAG--- 560 (676)
T ss_pred HHHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCC---
Confidence 999999999999999999987777788889999999999999999999999999998765 6799999998766554
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcccc
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T 271 (298)
++...|++||+++.+++++++.|+ .+.||+||+|+||.|.|
T Consensus 561 ------------~~~~aY~aSKaA~~~l~r~lA~el-~~~gIrVn~V~Pg~V~~ 601 (676)
T TIGR02632 561 ------------KNASAYSAAKAAEAHLARCLAAEG-GTYGIRVNTVNPDAVLQ 601 (676)
T ss_pred ------------CCCHHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEECCceec
Confidence 677889999999999999999999 88899999999999964
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=232.41 Aligned_cols=187 Identities=25% Similarity=0.320 Sum_probs=166.8
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|+++||||++|||.++|++|+++|++|++++|++++.++..+++.... +.++.++++|++++++++++++++.+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~- 75 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-----AVAVSTHELDILDTASHAAFLDSLPA- 75 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-----CCeEEEEecCCCChHHHHHHHHHHhh-
Confidence 689999999999999999999999999999999988888777765421 23789999999999999999998765
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
++|++|||+|.....+..+.+.+++++.+++|+.++++++++++|+|.+++.++||++||..+..+.
T Consensus 76 --~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~----------- 142 (243)
T PRK07102 76 --LPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGR----------- 142 (243)
T ss_pred --cCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCC-----------
Confidence 4699999999877667778899999999999999999999999999999888999999998765543
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++.+++++++.|+ .+.||+|++|+||+++|++...
T Consensus 143 ----~~~~~Y~~sK~a~~~~~~~l~~el-~~~gi~v~~v~pg~v~t~~~~~ 188 (243)
T PRK07102 143 ----ASNYVYGSAKAALTAFLSGLRNRL-FKSGVHVLTVKPGFVRTPMTAG 188 (243)
T ss_pred ----CCCcccHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCcccChhhhc
Confidence 666789999999999999999999 7889999999999999998654
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-31 Score=232.76 Aligned_cols=184 Identities=22% Similarity=0.343 Sum_probs=163.0
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
++++||||++|||.++|++|+++|++|++++|++++++++.+.+. .++.++.+|++|.++++++++++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dl~~~~~i~~~~~~~~~~ 71 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG---------DNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---------cceEEEEecCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999888776654431 26888999999999999999999999
Q ss_pred cCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 146 LGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 146 ~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
++++|++|||||+.. ..++.+.+.++|++.+++|+.|++.+++.++|+|.+++.++||++||..+..+.
T Consensus 72 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---------- 141 (248)
T PRK10538 72 WRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPY---------- 141 (248)
T ss_pred cCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCCC----------
Confidence 999999999999753 345677899999999999999999999999999998888999999998754433
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
++...|+++|+++++|++.++.|+ .+.||+|++|+||++.|++.
T Consensus 142 -----~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~v~~v~pg~i~~~~~ 185 (248)
T PRK10538 142 -----AGGNVYGATKAFVRQFSLNLRTDL-HGTAVRVTDIEPGLVGGTEF 185 (248)
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHh-cCCCcEEEEEeCCeeccccc
Confidence 667789999999999999999999 78899999999999985543
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=234.31 Aligned_cols=192 Identities=23% Similarity=0.317 Sum_probs=165.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc-hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL-KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|++|||||++|||.++|++|+++|++|++++|+. +..++..+.++.. +.++.++.+|+++++++.++++++.
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 75 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRAL------GVEVIFFPADVADLSAHEAMLDAAQ 75 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHHHH
Confidence 37899999999999999999999999999999874 3444554454331 2368899999999999999999999
Q ss_pred cccCCccEEEEccCCCC--CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC------CCeEEEEcCCccccCCC
Q 022369 144 GRLGPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS------PSRIINVNSVMHYVGFV 215 (298)
Q Consensus 144 ~~~g~idilVnnag~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~------~g~Iv~isS~~~~~~~~ 215 (298)
+.++++|++|||||... ..++.+.+.+++++.+++|+.+++.+++++++.|.+++ .++||++||..+..+.
T Consensus 76 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~- 154 (256)
T PRK12745 76 AAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVS- 154 (256)
T ss_pred HhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCC-
Confidence 99999999999999854 34577889999999999999999999999999998765 3579999998766554
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~ 278 (298)
+....|+++|+++++++++++.|+ .++||+|++|+||.+.|++.....
T Consensus 155 --------------~~~~~Y~~sK~a~~~~~~~l~~~~-~~~gi~v~~i~pg~v~t~~~~~~~ 202 (256)
T PRK12745 155 --------------PNRGEYCISKAGLSMAAQLFAARL-AEEGIGVYEVRPGLIKTDMTAPVT 202 (256)
T ss_pred --------------CCCcccHHHHHHHHHHHHHHHHHH-HHhCCEEEEEecCCCcCccccccc
Confidence 566789999999999999999999 778999999999999999876543
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=231.21 Aligned_cols=194 Identities=25% Similarity=0.352 Sum_probs=167.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC----chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN----LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
++++++++||||++|||+++|++|+++|++|++++|+ .+..+++.+++... +.++.++.+|++|++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~ 76 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAA------GGKALGLAFDVRDFAATRA 76 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHH
Confidence 4567999999999999999999999999999997764 44444444444321 2478899999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHh-hhhhcCCCCeEEEEcCCccccCCCC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLF-PSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l-p~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
+++++.+.++++|++|||||.....++.+.+.++|++.+++|+.+++.+++++. +.|++++.++||++||..+..+.
T Consensus 77 ~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-- 154 (249)
T PRK12827 77 ALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGN-- 154 (249)
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCC--
Confidence 999999988999999999999877778888999999999999999999999999 66666677899999998876654
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
++...|+++|+++..++++++.|+ .+.||++++++||+++|++....
T Consensus 155 -------------~~~~~y~~sK~a~~~~~~~l~~~~-~~~~i~~~~i~pg~v~t~~~~~~ 201 (249)
T PRK12827 155 -------------RGQVNYAASKAGLIGLTKTLANEL-APRGITVNAVAPGAINTPMADNA 201 (249)
T ss_pred -------------CCCchhHHHHHHHHHHHHHHHHHh-hhhCcEEEEEEECCcCCCccccc
Confidence 566789999999999999999999 77899999999999999987654
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=230.18 Aligned_cols=195 Identities=33% Similarity=0.473 Sum_probs=174.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEE-EcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++.+|++|||||++|||.++|++|+++|++|+++ +|+.++++...+.+... +.++.++.+|++|+++++++++
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE------GGDAIAVKADVSSEEDVENLVE 75 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHH
Confidence 4668999999999999999999999999999999 99988887777766541 2368899999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.++++|++|||+|.....++.+.+.+++++.+++|+.+++.+++.++|.|.+++.+++|++||..+..+.
T Consensus 76 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~------ 149 (247)
T PRK05565 76 QIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGA------ 149 (247)
T ss_pred HHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCC------
Confidence 99999999999999999876666778899999999999999999999999999998888999999998766554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~ 278 (298)
+....|+++|+++..++++++.++ ...||++++++||.++|++.+...
T Consensus 150 ---------~~~~~y~~sK~a~~~~~~~~~~~~-~~~gi~~~~v~pg~v~t~~~~~~~ 197 (247)
T PRK05565 150 ---------SCEVLYSASKGAVNAFTKALAKEL-APSGIRVNAVAPGAIDTEMWSSFS 197 (247)
T ss_pred ---------CCccHHHHHHHHHHHHHHHHHHHH-HHcCeEEEEEEECCccCccccccC
Confidence 566779999999999999999999 778999999999999999987654
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=231.27 Aligned_cols=180 Identities=27% Similarity=0.287 Sum_probs=155.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
++++||||++|||+++|++|+++|++|++++|++++++++.+.. .++.++++|++|+++++++++++..
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~~~- 70 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQS----------ANIFTLAFDVTDHPGTKAALSQLPF- 70 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc----------CCCeEEEeeCCCHHHHHHHHHhccc-
Confidence 68999999999999999999999999999999987766554321 2578899999999999999988643
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
.+|++|||||.....+..+.+.++|++.+++|+.|+++++++++|+|.+ +++||++||..+..+.
T Consensus 71 --~~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~iv~isS~~~~~~~----------- 135 (240)
T PRK06101 71 --IPELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSC--GHRVVIVGSIASELAL----------- 135 (240)
T ss_pred --CCCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCeEEEEechhhccCC-----------
Confidence 4799999999764444556788999999999999999999999999964 4689999998766554
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++++|+++++.|+ .++||++++++||.+.|++.+.
T Consensus 136 ----~~~~~Y~asK~a~~~~~~~l~~e~-~~~gi~v~~v~pg~i~t~~~~~ 181 (240)
T PRK06101 136 ----PRAEAYGASKAAVAYFARTLQLDL-RPKGIEVVTVFPGFVATPLTDK 181 (240)
T ss_pred ----CCCchhhHHHHHHHHHHHHHHHHH-HhcCceEEEEeCCcCCCCCcCC
Confidence 677789999999999999999999 7789999999999999998653
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-32 Score=220.43 Aligned_cols=163 Identities=37% Similarity=0.547 Sum_probs=149.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC--chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN--LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
|++|||||++|||+++|++|+++|+ +|++++|+ .+..+++.+++... +.++.++++|++++++++++++++
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 74 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAP------GAKITFIECDLSDPESIRALIEEV 74 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHT------TSEEEEEESETTSHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccc------cccccccccccccccccccccccc
Confidence 6899999999999999999999976 78889999 77788887777642 258999999999999999999999
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.++++++|++|||||.....++.+.+.++|++.+++|+.+++++.++++| ++.|+||++||..+..+.
T Consensus 75 ~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~----~~~g~iv~~sS~~~~~~~-------- 142 (167)
T PF00106_consen 75 IKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP----QGGGKIVNISSIAGVRGS-------- 142 (167)
T ss_dssp HHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH----HTTEEEEEEEEGGGTSSS--------
T ss_pred ccccccccccccccccccccccccccchhhhhccccccceeeeeeehhee----ccccceEEecchhhccCC--------
Confidence 99999999999999999888899999999999999999999999999999 457999999999866665
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHc
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRL 253 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~ 253 (298)
+....|+++|+|+.+|+++|+.|+
T Consensus 143 -------~~~~~Y~askaal~~~~~~la~e~ 166 (167)
T PF00106_consen 143 -------PGMSAYSASKAALRGLTQSLAAEL 166 (167)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------CCChhHHHHHHHHHHHHHHHHHhc
Confidence 888999999999999999999996
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=231.64 Aligned_cols=187 Identities=22% Similarity=0.314 Sum_probs=166.6
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|+++||||++|||+++|++|+++|++|++++|+.++++.+.+++.. .++.++++|++|++++.++++++.+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGD--------ARFVPVACDLTDAASLAAALANAAA 73 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC--------CceEEEEecCCCHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999998888777666521 3688999999999999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
+++++|++|||+|.....++.+.+.++|++.+++|+.+++.+.+++++.|.+++.++||++||..+...
T Consensus 74 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~----------- 142 (257)
T PRK07074 74 ERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNGMAA----------- 142 (257)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcCC-----------
Confidence 999999999999987766777889999999999999999999999999999888899999999754321
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
.+...|+++|+++..++++++.|+ .++||+|++++||+++|++...
T Consensus 143 -----~~~~~y~~sK~a~~~~~~~~a~~~-~~~gi~v~~v~pg~v~t~~~~~ 188 (257)
T PRK07074 143 -----LGHPAYSAAKAGLIHYTKLLAVEY-GRFGIRANAVAPGTVKTQAWEA 188 (257)
T ss_pred -----CCCcccHHHHHHHHHHHHHHHHHH-hHhCeEEEEEEeCcCCcchhhc
Confidence 234569999999999999999999 7889999999999999998643
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-31 Score=250.68 Aligned_cols=191 Identities=30% Similarity=0.432 Sum_probs=167.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++|+++|||||++|||+++|++|+++|++|++++|.. +.++++.+++ ...++.+|++|++++++++
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~-----------~~~~~~~Dv~~~~~~~~~~ 275 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRV-----------GGTALALDITAPDAPARIA 275 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHc-----------CCeEEEEeCCCHHHHHHHH
Confidence 46789999999999999999999999999999999843 3333332221 2357889999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+.+.+.+|++|++|||||+.....+.+.+.++|+..+++|+.+++++++++++.+..++.++||++||.++..+.
T Consensus 276 ~~~~~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~----- 350 (450)
T PRK08261 276 EHLAERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGN----- 350 (450)
T ss_pred HHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCC-----
Confidence 999999999999999999987778888999999999999999999999999997766677999999999876655
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~ 279 (298)
+....|+++|+++++|+++++.|+ .++||++|+|+||+++|+|++..+.
T Consensus 351 ----------~~~~~Y~asKaal~~~~~~la~el-~~~gi~v~~v~PG~i~t~~~~~~~~ 399 (450)
T PRK08261 351 ----------RGQTNYAASKAGVIGLVQALAPLL-AERGITINAVAPGFIETQMTAAIPF 399 (450)
T ss_pred ----------CCChHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEEeCcCcchhhhccch
Confidence 667889999999999999999999 7789999999999999999876643
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6e-31 Score=228.69 Aligned_cols=194 Identities=24% Similarity=0.376 Sum_probs=170.5
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCC--CHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLL--SLDSVVRF 138 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s--~~~~v~~~ 138 (298)
..+++|+++||||++|||.+++++|+++|++|++++|+.+++++..+++.+... .++.++.+|++ ++++++++
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~d~~~~~~~~~~~~ 82 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG-----PQPAIIPLDLLTATPQNYQQL 82 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC-----CCceEEEecccCCCHHHHHHH
Confidence 456899999999999999999999999999999999999888887777765321 25667777775 88999999
Q ss_pred HHHHhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
++.+.+.++++|++|||||... ..++.+.+.+++++.+++|+.+++.++++++|.|.+++.++||++||..+..+.
T Consensus 83 ~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~--- 159 (247)
T PRK08945 83 ADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGR--- 159 (247)
T ss_pred HHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCCC---
Confidence 9999999999999999999854 346678889999999999999999999999999999888999999998766554
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|++||+++++|+++++.++ ...||++++++||.++|++..
T Consensus 160 ------------~~~~~Y~~sK~a~~~~~~~~~~~~-~~~~i~~~~v~pg~v~t~~~~ 204 (247)
T PRK08945 160 ------------ANWGAYAVSKFATEGMMQVLADEY-QGTNLRVNCINPGGTRTAMRA 204 (247)
T ss_pred ------------CCCcccHHHHHHHHHHHHHHHHHh-cccCEEEEEEecCCccCcchh
Confidence 667789999999999999999999 778999999999999999743
|
|
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-31 Score=218.07 Aligned_cols=193 Identities=27% Similarity=0.354 Sum_probs=157.8
Q ss_pred CEEEEeCCCCchHHHHHHHHHHc-CCEEE-EEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAES-GAHVV-MAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~-G~~Vi-l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
|.++||||.+|||+.++++|.+. |..++ ..+|++++. .+++...... ..+++.+++|+++.+++.++++++.
T Consensus 4 ksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a---~~~l~~k~~~---d~rvHii~Ldvt~deS~~~~~~~V~ 77 (249)
T KOG1611|consen 4 KSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKA---ATELALKSKS---DSRVHIIQLDVTCDESIDNFVQEVE 77 (249)
T ss_pred ccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHh---hHHHHHhhcc---CCceEEEEEecccHHHHHHHHHHHH
Confidence 66999999999999999999876 55554 456778875 2233322111 2489999999999999999999999
Q ss_pred ccc--CCccEEEEccCCCCCC-CCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-----------CCeEEEEcCCc
Q 022369 144 GRL--GPLHVLINNAGIFSIG-EPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-----------PSRIINVNSVM 209 (298)
Q Consensus 144 ~~~--g~idilVnnag~~~~~-~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-----------~g~Iv~isS~~ 209 (298)
+-. ..+|+||||||+.... ...+-+.+.|.+.+++|..|++.++|+++|++++.. ++.|||+||.+
T Consensus 78 ~iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~ 157 (249)
T KOG1611|consen 78 KIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSA 157 (249)
T ss_pred hhcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccc
Confidence 874 4699999999997643 345667788999999999999999999999998743 34899999988
Q ss_pred cccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 210 HYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+..+. ..+ .+..+|..||+|+++|+++++.|+ .+.+|-|..+|||+|.|+|....
T Consensus 158 ~s~~~-----------~~~-~~~~AYrmSKaAlN~f~ksls~dL-~~~~ilv~sihPGwV~TDMgg~~ 212 (249)
T KOG1611|consen 158 GSIGG-----------FRP-GGLSAYRMSKAALNMFAKSLSVDL-KDDHILVVSIHPGWVQTDMGGKK 212 (249)
T ss_pred cccCC-----------CCC-cchhhhHhhHHHHHHHHHHhhhhh-cCCcEEEEEecCCeEEcCCCCCC
Confidence 76432 111 456889999999999999999999 78999999999999999998754
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.6e-31 Score=228.75 Aligned_cols=194 Identities=30% Similarity=0.398 Sum_probs=173.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||+++||.+++++|+++|++|++++|+.+++++..+++... +.++.++.+|++|++++++++++
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAA------GGKARARQVDVRDRAALKAAVAA 76 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHH
Confidence 456899999999999999999999999999999999988888777776542 13588999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccc-cCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY-VGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~-~~~~~~~~~ 220 (298)
+.++++++|++|||+|.....++.+.+.+++++.+++|+.+++.+++.++|.|.+++.++||++||..+. .+.
T Consensus 77 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~~~------ 150 (251)
T PRK12826 77 GVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRVGY------ 150 (251)
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhccCC------
Confidence 9999999999999999887777778899999999999999999999999999998888999999998765 332
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|+++|++++.++++++.++ ...|++++.++||.+.|+..+..
T Consensus 151 ---------~~~~~y~~sK~a~~~~~~~~~~~~-~~~~i~~~~i~pg~~~~~~~~~~ 197 (251)
T PRK12826 151 ---------PGLAHYAASKAGLVGFTRALALEL-AARNITVNSVHPGGVDTPMAGNL 197 (251)
T ss_pred ---------CCccHHHHHHHHHHHHHHHHHHHH-HHcCeEEEEEeeCCCCcchhhhc
Confidence 666789999999999999999998 77899999999999999987654
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-31 Score=228.28 Aligned_cols=178 Identities=25% Similarity=0.324 Sum_probs=157.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++|+++||||++|||+++|++|+++|++|++++|+.++ . . ...++.+|++|+++++++++++.
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~------~----~-------~~~~~~~D~~~~~~~~~~~~~~~ 64 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID------D----F-------PGELFACDLADIEQTAATLAQIN 64 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc------c----c-------CceEEEeeCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999999998653 0 0 12467899999999999999998
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+.+ ++|++|||||.....++.+.+.+++++.+++|+.+++.+++.++|.|++++.|+||++||... .+.
T Consensus 65 ~~~-~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~-~~~--------- 133 (234)
T PRK07577 65 EIH-PVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAI-FGA--------- 133 (234)
T ss_pred HhC-CCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccc-cCC---------
Confidence 876 699999999998777788889999999999999999999999999999888899999999752 222
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++++|+++++.|+ .+.||+|++|+||+++|++.+.
T Consensus 134 ------~~~~~Y~~sK~a~~~~~~~~a~e~-~~~gi~v~~i~pg~~~t~~~~~ 179 (234)
T PRK07577 134 ------LDRTSYSAAKSALVGCTRTWALEL-AEYGITVNAVAPGPIETELFRQ 179 (234)
T ss_pred ------CCchHHHHHHHHHHHHHHHHHHHH-HhhCcEEEEEecCcccCccccc
Confidence 556789999999999999999999 7789999999999999998754
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.1e-31 Score=230.82 Aligned_cols=186 Identities=26% Similarity=0.369 Sum_probs=156.8
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc-hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL-KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
|+++||||++|||+++|++|+++|++|++++|+. +.+++..+. . +.+++++++|++++++++++++++.+
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~----~-----~~~~~~~~~D~~~~~~~~~~~~~~~~ 72 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQ----Y-----NSNLTFHSLDLQDVHELETNFNEILS 72 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhc----c-----CCceEEEEecCCCHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999986 333332211 1 23688899999999999999999887
Q ss_pred ccCC--cc--EEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCccccCCCCcc
Q 022369 145 RLGP--LH--VLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 145 ~~g~--id--ilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~~~~~~~~~~ 218 (298)
.++. ++ ++|||||... ..++.+.+.++|++.+++|+.+++.+++.++|.|++. ..|+||++||..+..+
T Consensus 73 ~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~----- 147 (251)
T PRK06924 73 SIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNP----- 147 (251)
T ss_pred hcCcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCC-----
Confidence 7653 22 8999999854 3567889999999999999999999999999999875 4579999999865433
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcC-CCCCcEEEEeeCCccccCccC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLP-AESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~-~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
++....|+++|+|+.+|++.++.|+. .+.||+|++|+||+++|++..
T Consensus 148 ----------~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~ 195 (251)
T PRK06924 148 ----------YFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTNMQA 195 (251)
T ss_pred ----------CCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccHhHH
Confidence 37788899999999999999999973 357899999999999999854
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=226.26 Aligned_cols=191 Identities=26% Similarity=0.303 Sum_probs=165.2
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.+++++++|||||++|||.+++++|+++|++|++..| +.+...+..+.+.+. +.++.++.+|+++++++++++
T Consensus 2 ~~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~ 75 (252)
T PRK06077 2 YSLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKEN------GGEGIGVLADVSTREGCETLA 75 (252)
T ss_pred CCCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHc------CCeeEEEEeccCCHHHHHHHH
Confidence 3467899999999999999999999999999988775 445555554444432 136778999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+.++++|++|||||.....++.+.+.+.+++.+++|+.+++.++++++|.|.+ .|+||++||.+++.+.
T Consensus 76 ~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~iv~~sS~~~~~~~----- 148 (252)
T PRK06077 76 KATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMRE--GGAIVNIASVAGIRPA----- 148 (252)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhc--CcEEEEEcchhccCCC-----
Confidence 999999999999999999877777778888999999999999999999999999976 4799999998866554
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
++...|+++|+++++++++++.|+ .+ +|+++.+.||+++|++...
T Consensus 149 ----------~~~~~Y~~sK~~~~~~~~~l~~~~-~~-~i~v~~v~Pg~i~t~~~~~ 193 (252)
T PRK06077 149 ----------YGLSIYGAMKAAVINLTKYLALEL-AP-KIRVNAIAPGFVKTKLGES 193 (252)
T ss_pred ----------CCchHHHHHHHHHHHHHHHHHHHH-hc-CCEEEEEeeCCccChHHHh
Confidence 777889999999999999999999 65 8999999999999998643
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=228.08 Aligned_cols=189 Identities=30% Similarity=0.442 Sum_probs=169.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
++++|||||++|||.+++++|+++|++|++++|+.++.+++.+++... +.++.++.+|++|+++++++++++.+
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~~~~~~~~~ 74 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADH------GGEALVVPTDVSDAEACERLIEAAVA 74 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999988888777666542 23688899999999999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCCcc-ChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKF-SKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~-~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+++++|++|||||.....++.+. +.+++++.+++|+.+++.+++.++|+|.++ .++||++||..++.+.
T Consensus 75 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~iv~~sS~~~~~~~--------- 144 (263)
T PRK06181 75 RFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKAS-RGQIVVVSSLAGLTGV--------- 144 (263)
T ss_pred HcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCEEEEEecccccCCC---------
Confidence 99999999999998777777777 889999999999999999999999999765 4899999998766554
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
++...|+++|+++++++++++.++ .+++|+++++.||.+.|++.+.
T Consensus 145 ------~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~~~~i~pg~v~t~~~~~ 190 (263)
T PRK06181 145 ------PTRSGYAASKHALHGFFDSLRIEL-ADDGVAVTVVCPGFVATDIRKR 190 (263)
T ss_pred ------CCccHHHHHHHHHHHHHHHHHHHh-hhcCceEEEEecCccccCcchh
Confidence 667789999999999999999999 7789999999999999998654
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-30 Score=224.68 Aligned_cols=188 Identities=27% Similarity=0.340 Sum_probs=163.6
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEE-EEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVM-AVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
|++|||||++|||.+++++|+++|++|++ ..|+.++.++..+++... +.++..+++|++|+++++++++++.+
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~d~~~i~~~~~~~~~ 75 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQA------GGKAFVLQADISDENQVVAMFTAIDQ 75 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhC------CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999987 467877777776666542 23688899999999999999999999
Q ss_pred ccCCccEEEEccCCC-CCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC---CCeEEEEcCCccccCCCCcccc
Q 022369 145 RLGPLHVLINNAGIF-SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS---PSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 145 ~~g~idilVnnag~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~---~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+++++|++|||||.. ...++.+.+.++|+..+++|+.+++.+++.+++.|.++. .|+||++||..+..+.
T Consensus 76 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~------ 149 (247)
T PRK09730 76 HDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGA------ 149 (247)
T ss_pred hCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCC------
Confidence 999999999999975 345667889999999999999999999999999998753 5789999998766554
Q ss_pred cccccccCCCC-cccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 221 NVVSGRRKYTS-LMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ~~~~~~~~~~~-~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+. ...|+++|++++.++++++.|+ .+.||++++++||.+.|++..
T Consensus 150 ---------~~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~v~~i~pg~~~~~~~~ 195 (247)
T PRK09730 150 ---------PGEYVDYAASKGAIDTLTTGLSLEV-AAQGIRVNCVRPGFIYTEMHA 195 (247)
T ss_pred ---------CCcccchHhHHHHHHHHHHHHHHHH-HHhCeEEEEEEeCCCcCcccc
Confidence 32 3569999999999999999999 778999999999999999864
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=225.75 Aligned_cols=204 Identities=30% Similarity=0.394 Sum_probs=168.6
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++++++||||++|||.++++.|+++|++|++++|+.++++++.+.. ...++.+|++++++++++++.
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----------~~~~~~~D~~~~~~v~~~~~~ 74 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGET-----------GCEPLRLDVGDDAAIRAALAA 74 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----------CCeEEEecCCCHHHHHHHHHH
Confidence 577899999999999999999999999999999999987776554332 345788999999988887775
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++++|++|||||.....+..+.+.+++++.+++|+.+++.+++++++.+.+++ .|+||++||..++.+.
T Consensus 75 ----~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 144 (245)
T PRK07060 75 ----AGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGL------ 144 (245)
T ss_pred ----hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCC------
Confidence 47899999999997777777889999999999999999999999999998654 4899999998766554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC---chHHHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD---LPKIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~---~~~~~~~~~~~~p~~~~-~pe 296 (298)
+....|+++|++++.++++++.++ .+.||++++++||.+.|++.+. .+...+.+....|..++ +|+
T Consensus 145 ---------~~~~~y~~sK~a~~~~~~~~a~~~-~~~~i~v~~v~pg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (245)
T PRK07060 145 ---------PDHLAYCASKAALDAITRVLCVEL-GPHGIRVNSVNPTVTLTPMAAEAWSDPQKSGPMLAAIPLGRFAEVD 214 (245)
T ss_pred ---------CCCcHhHHHHHHHHHHHHHHHHHH-hhhCeEEEEEeeCCCCCchhhhhccCHHHHHHHHhcCCCCCCCCHH
Confidence 566789999999999999999999 7789999999999999998642 12222333344555444 444
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=222.69 Aligned_cols=190 Identities=25% Similarity=0.339 Sum_probs=169.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+.+++++||||+++||.+++++|+++|++|++++|+++++++..+++.+. .++.++++|++++++++++++++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~-------~~~~~~~~D~~~~~~~~~~~~~~ 76 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK-------GNVLGLAADVRDEADVQRAVDAI 76 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc-------CcEEEEEccCCCHHHHHHHHHHH
Confidence 56799999999999999999999999999999999998888777766532 26889999999999999999999
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.+.++++|++|||+|.....++.+.+.+++++.+++|+.+++.+++++++.| +++.|+||++||..+..+.
T Consensus 77 ~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~~~iv~~ss~~~~~~~-------- 147 (237)
T PRK07326 77 VAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPAL-KRGGGYIINISSLAGTNFF-------- 147 (237)
T ss_pred HHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHH-HHCCeEEEEECChhhccCC--------
Confidence 9999999999999998877777888999999999999999999999999999 4456899999998755433
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++.++++.++.|+ ...|+++++|+||.+.|++...
T Consensus 148 -------~~~~~y~~sk~a~~~~~~~~~~~~-~~~gi~v~~v~pg~~~t~~~~~ 193 (237)
T PRK07326 148 -------AGGAAYNASKFGLVGFSEAAMLDL-RQYGIKVSTIMPGSVATHFNGH 193 (237)
T ss_pred -------CCCchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEeeccccCccccc
Confidence 566779999999999999999999 7789999999999999998654
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-31 Score=226.79 Aligned_cols=180 Identities=22% Similarity=0.326 Sum_probs=147.8
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+++|||||++|||+++|++|+++| ..|++..|+.... . . ..++.++++|+++.++++++.+
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~------~----~----~~~~~~~~~Dls~~~~~~~~~~--- 63 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD------F----Q----HDNVQWHALDVTDEAEIKQLSE--- 63 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc------c----c----cCceEEEEecCCCHHHHHHHHH---
Confidence 479999999999999999999985 5676667654321 0 0 1368899999999999888543
Q ss_pred cccCCccEEEEccCCCCC------CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 144 GRLGPLHVLINNAGIFSI------GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~------~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
.++++|++|||||+... .++.+.+.+.|++.+++|+.+++.+++.++|.|.+++.++|+++||..+....
T Consensus 64 -~~~~id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~~~~--- 139 (235)
T PRK09009 64 -QFTQLDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGSISD--- 139 (235)
T ss_pred -hcCCCCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeeccccccc---
Confidence 45899999999998742 34667888999999999999999999999999998877899999986543221
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCC--CCcEEEEeeCCccccCccCC
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAE--SGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~--~gI~v~~v~Pg~v~T~~~~~ 276 (298)
.+.+++..|+++|+++.+|+++|+.|+ .+ .||+|++|+||+|+|++.+.
T Consensus 140 ---------~~~~~~~~Y~asK~a~~~~~~~la~e~-~~~~~~i~v~~v~PG~v~t~~~~~ 190 (235)
T PRK09009 140 ---------NRLGGWYSYRASKAALNMFLKTLSIEW-QRSLKHGVVLALHPGTTDTALSKP 190 (235)
T ss_pred ---------CCCCCcchhhhhHHHHHHHHHHHHHHh-hcccCCeEEEEEcccceecCCCcc
Confidence 123566789999999999999999999 44 69999999999999999764
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=226.16 Aligned_cols=182 Identities=23% Similarity=0.335 Sum_probs=155.3
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH-Hhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA-WNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~-~~~ 144 (298)
+++|||||++|||+++|++|+++|++|++++|+.++. . ... .+.++.++++|+++++++++++++ +.+
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~--~----~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 70 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS--L----AAA-----AGERLAEVELDLSDAAAAAAWLAGDLLA 70 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh--h----hhc-----cCCeEEEEEeccCCHHHHHHHHHHHHHH
Confidence 3699999999999999999999999999999986531 1 111 124788999999999999997776 544
Q ss_pred cc---CCccEEEEccCCCCC-CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 145 RL---GPLHVLINNAGIFSI-GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 145 ~~---g~idilVnnag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
.+ +++|++|||||.... .++.+.+.+++++.+++|+.+++.+++.+++.|.+++.|+||++||..+..+.
T Consensus 71 ~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~------ 144 (243)
T PRK07023 71 AFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNAY------ 144 (243)
T ss_pred HhccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCCC------
Confidence 44 479999999998653 56777899999999999999999999999999998888999999998755443
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
++...|+++|++++++++.++.| .+.||++++|+||+++|++..
T Consensus 145 ---------~~~~~Y~~sK~a~~~~~~~~~~~--~~~~i~v~~v~pg~~~t~~~~ 188 (243)
T PRK07023 145 ---------AGWSVYCATKAALDHHARAVALD--ANRALRIVSLAPGVVDTGMQA 188 (243)
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHhc--CCCCcEEEEecCCccccHHHH
Confidence 77788999999999999999999 457999999999999999854
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=221.50 Aligned_cols=184 Identities=22% Similarity=0.288 Sum_probs=156.4
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|+++||||++|||.++|++|+++|++|++++|++++.+++.+ + .++.++.+|++|+++++++++++.+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~-~----------~~~~~~~~D~~d~~~~~~~~~~~~~- 69 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQA-L----------PGVHIEKLDMNDPASLDQLLQRLQG- 69 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHh-c----------cccceEEcCCCCHHHHHHHHHHhhc-
Confidence 689999999999999999999999999999999887654421 1 1466788999999999999998865
Q ss_pred cCCccEEEEccCCCCC--CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 146 LGPLHVLINNAGIFSI--GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 146 ~g~idilVnnag~~~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+++|++|||||+... .++.+.+.+++++.+++|+.+++.+++.++|.|.+. .++|+++||..+..+.
T Consensus 70 -~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~iv~~ss~~g~~~~--------- 138 (225)
T PRK08177 70 -QRFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPG-QGVLAFMSSQLGSVEL--------- 138 (225)
T ss_pred -CCCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhc-CCEEEEEccCcccccc---------
Confidence 479999999998643 456788999999999999999999999999998753 4799999998665432
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
.+......|+++|++++.|+++++.|+ .++||+|++|+||+++|++.+.
T Consensus 139 ---~~~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~~i~v~~i~PG~i~t~~~~~ 187 (225)
T PRK08177 139 ---PDGGEMPLYKASKAALNSMTRSFVAEL-GEPTLTVLSMHPGWVKTDMGGD 187 (225)
T ss_pred ---CCCCCccchHHHHHHHHHHHHHHHHHh-hcCCeEEEEEcCCceecCCCCC
Confidence 112345679999999999999999999 7789999999999999999764
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=221.13 Aligned_cols=195 Identities=29% Similarity=0.435 Sum_probs=170.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH-HHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA-ANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|++|||||+++||.++++.|+++|++|+++.|+.+. .+...+++... +.++..+.+|+++++++.++++
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~ 75 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGAL------GGKALAVQGDVSDAESVERAVD 75 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHH
Confidence 4567999999999999999999999999999888887653 55555554332 2378899999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.++++|++|||||.....+..+.+.+++++.+++|+.+++.+.+.+++.+.+++.+++|++||..+..+.
T Consensus 76 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~------ 149 (248)
T PRK05557 76 EAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGN------ 149 (248)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCC------
Confidence 99999999999999999887777778899999999999999999999999999988877899999998765554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~ 278 (298)
+....|+++|++++.++++++.++ ...||++++++||+++|++.+...
T Consensus 150 ---------~~~~~y~~sk~a~~~~~~~~a~~~-~~~~i~~~~v~pg~~~~~~~~~~~ 197 (248)
T PRK05557 150 ---------PGQANYAASKAGVIGFTKSLAREL-ASRGITVNAVAPGFIETDMTDALP 197 (248)
T ss_pred ---------CCCchhHHHHHHHHHHHHHHHHHh-hhhCeEEEEEecCccCCccccccC
Confidence 567789999999999999999998 778999999999999999877653
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=218.73 Aligned_cols=161 Identities=16% Similarity=0.242 Sum_probs=144.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
+++||||++|||+++|++|+++ ++|++++|+.+ .+++|++|++++++++++ +
T Consensus 2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~-----------------------~~~~D~~~~~~~~~~~~~----~ 53 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG-----------------------DVQVDITDPASIRALFEK----V 53 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC-----------------------ceEecCCChHHHHHHHHh----c
Confidence 6999999999999999999999 99999999842 257999999999998875 4
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
+++|++|||||.....++.+.+.++|++.+++|+.++++++++++|+|.+ .|+|+++||..+..+.
T Consensus 54 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~g~iv~iss~~~~~~~------------ 119 (199)
T PRK07578 54 GKVDAVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLND--GGSFTLTSGILSDEPI------------ 119 (199)
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCeEEEEcccccCCCC------------
Confidence 78999999999877777888899999999999999999999999999975 4799999998765444
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
+....|+++|+++.+|+++++.|+ ++||+|++|+||+++|++.
T Consensus 120 ---~~~~~Y~~sK~a~~~~~~~la~e~--~~gi~v~~i~Pg~v~t~~~ 162 (199)
T PRK07578 120 ---PGGASAATVNGALEGFVKAAALEL--PRGIRINVVSPTVLTESLE 162 (199)
T ss_pred ---CCchHHHHHHHHHHHHHHHHHHHc--cCCeEEEEEcCCcccCchh
Confidence 778889999999999999999998 4689999999999999974
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.6e-30 Score=224.17 Aligned_cols=184 Identities=24% Similarity=0.297 Sum_probs=161.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|++|||||++|||.+++++|+++|++|++++|+.++.+++.+..... +..+.++.+|++|++++.++++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~---- 71 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARR------GLALRVEKLDLTDAIDRAQAAE---- 71 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcceEEEeeCCCHHHHHHHhc----
Confidence 578999999999999999999999999999999988776665544332 1358889999999998877653
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
+++|++|||||.....++.+.+.+++++.+++|+.+++.+++.+++.|.+++.|+||++||..+..+.
T Consensus 72 --~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~---------- 139 (257)
T PRK09291 72 --WDVDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITG---------- 139 (257)
T ss_pred --CCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCC----------
Confidence 37999999999987778889999999999999999999999999999998888999999998765544
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
++...|+++|+++++++++++.|+ .+.||++++|+||++.|++.+.
T Consensus 140 -----~~~~~Y~~sK~a~~~~~~~l~~~~-~~~gi~~~~v~pg~~~t~~~~~ 185 (257)
T PRK09291 140 -----PFTGAYCASKHALEAIAEAMHAEL-KPFGIQVATVNPGPYLTGFNDT 185 (257)
T ss_pred -----CCcchhHHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcccccchhh
Confidence 566789999999999999999999 7789999999999999988654
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-30 Score=220.52 Aligned_cols=195 Identities=31% Similarity=0.442 Sum_probs=172.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++.+|++|||||+++||.+++++|+++|++|++++|++++.+....++... +.++.++.+|++|++++.+++++
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 75 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAA------GGEARVLVFDVSDEAAVRALIEA 75 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHHHH
Confidence 355789999999999999999999999999999999998888777666532 24688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+.++++|++|||+|.....+..+.+.+++++.+++|+.+++.+++.++|+|.+.+.++||++||..+..+.
T Consensus 76 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~------- 148 (246)
T PRK05653 76 AVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGN------- 148 (246)
T ss_pred HHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccCC-------
Confidence 9888899999999999877777778899999999999999999999999999988777899999998755443
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~ 278 (298)
+....|+.+|+++..++++++.++ .+.|+++++++||.+.+++...+.
T Consensus 149 --------~~~~~y~~sk~~~~~~~~~l~~~~-~~~~i~~~~i~pg~~~~~~~~~~~ 196 (246)
T PRK05653 149 --------PGQTNYSAAKAGVIGFTKALALEL-ASRGITVNAVAPGFIDTDMTEGLP 196 (246)
T ss_pred --------CCCcHhHhHHHHHHHHHHHHHHHH-hhcCeEEEEEEeCCcCCcchhhhh
Confidence 566779999999999999999998 778999999999999999876543
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=218.66 Aligned_cols=190 Identities=24% Similarity=0.329 Sum_probs=168.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||+++||.+++++|+++|++|++++|+.++..+..+++... .+..+.+|++|.+++++++++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--------~~~~~~~D~~~~~~~~~~~~~ 75 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPAD--------ALRIGGIDLVDPQAARRAVDE 75 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhc--------CceEEEeecCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999988777666555431 456778999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+.+|++|++|||+|.....++.+.+.+++++.+++|+.+++.++++++|.|.+++.++||++||..++.+.
T Consensus 76 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------- 148 (239)
T PRK12828 76 VNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAG------- 148 (239)
T ss_pred HHHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhccCC-------
Confidence 9999999999999999876666777899999999999999999999999999998888999999998765543
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|+++|+++..++++++.++ .+.||+++.+.||.+.|++..
T Consensus 149 --------~~~~~y~~sk~a~~~~~~~~a~~~-~~~~i~~~~i~pg~v~~~~~~ 193 (239)
T PRK12828 149 --------PGMGAYAAAKAGVARLTEALAAEL-LDRGITVNAVLPSIIDTPPNR 193 (239)
T ss_pred --------CCcchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccCcchh
Confidence 566789999999999999999998 778999999999999998643
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=221.98 Aligned_cols=191 Identities=30% Similarity=0.398 Sum_probs=167.6
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++++++|||||++|||.++|++|+++|++|++++|+.+..+++.++..+ .++.++.+|++|++++++++++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG--------AKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc--------CceEEEEccCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999998777766554422 1578899999999999999999
Q ss_pred HhcccCCccEEEEccCCC-CCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCC-CeEEEEcCCccccCCCCccc
Q 022369 142 WNGRLGPLHVLINNAGIF-SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSP-SRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~-g~Iv~isS~~~~~~~~~~~~ 219 (298)
+.+.++++|++|||||.. ...+..+.+.+++++.+++|+.+++.+++.+++.|.+.+. ++|+++||..+..+.
T Consensus 80 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~----- 154 (264)
T PRK12829 80 AVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGY----- 154 (264)
T ss_pred HHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCC-----
Confidence 999999999999999987 4556678899999999999999999999999999887665 789999997755443
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|++++.+++.++.++ ...+++++++.||++.|++.+.
T Consensus 155 ----------~~~~~y~~~K~a~~~~~~~l~~~~-~~~~i~~~~l~pg~v~~~~~~~ 200 (264)
T PRK12829 155 ----------PGRTPYAASKWAVVGLVKSLAIEL-GPLGIRVNAILPGIVRGPRMRR 200 (264)
T ss_pred ----------CCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCCcCChHHHH
Confidence 666789999999999999999998 6789999999999999998643
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=249.50 Aligned_cols=193 Identities=22% Similarity=0.257 Sum_probs=174.7
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
...+.||++|||||++|||+++|++|+++|++|++++|+.++++...+++... ..+.++.+|++|++++++++
T Consensus 417 ~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~-------~~v~~v~~Dvtd~~~v~~~~ 489 (681)
T PRK08324 417 PKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP-------DRALGVACDVTDEAAVQAAF 489 (681)
T ss_pred CcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc-------CcEEEEEecCCCHHHHHHHH
Confidence 34568999999999999999999999999999999999998888777665432 26889999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCC-CeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSP-SRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~-g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+.+|++|++|||||+....++.+.+.++|++.+++|+.|++.+++.+++.|++++. |+||++||..+..+.
T Consensus 490 ~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~---- 565 (681)
T PRK08324 490 EEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPG---- 565 (681)
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCC----
Confidence 999999999999999999988888889999999999999999999999999999998764 899999998766554
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcc--ccCccC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIV--STNVAR 275 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v--~T~~~~ 275 (298)
++...|+++|+++.+++++++.|+ .+.||+||+|+||.| .|++..
T Consensus 566 -----------~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~Pg~v~~~t~~~~ 612 (681)
T PRK08324 566 -----------PNFGAYGAAKAAELHLVRQLALEL-GPDGIRVNGVNPDAVVRGSGIWT 612 (681)
T ss_pred -----------CCcHHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeCceeecCCcccc
Confidence 677889999999999999999999 788999999999999 888754
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.6e-30 Score=218.91 Aligned_cols=175 Identities=21% Similarity=0.209 Sum_probs=152.4
Q ss_pred EEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccCC
Q 022369 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGP 148 (298)
Q Consensus 69 lITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g~ 148 (298)
|||||++|||+++|++|+++|++|++++|+.++++...+++++ +.++.++.+|++|++++++++++ +++
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~----~~~ 69 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG-------GAPVRTAALDITDEAAVDAFFAE----AGP 69 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-------CCceEEEEccCCCHHHHHHHHHh----cCC
Confidence 6999999999999999999999999999998887776665531 23688899999999999988876 378
Q ss_pred ccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccccC
Q 022369 149 LHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRK 228 (298)
Q Consensus 149 idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~ 228 (298)
+|+||||+|.....++.+.+.+++++.+++|+.+++++++ ++.|. +.|+||++||..++.+.
T Consensus 70 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~--~~~~~--~~g~iv~~ss~~~~~~~-------------- 131 (230)
T PRK07041 70 FDHVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVAR--AARIA--PGGSLTFVSGFAAVRPS-------------- 131 (230)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHh--hhhhc--CCeEEEEECchhhcCCC--------------
Confidence 9999999999877778888999999999999999999999 45553 46899999999866554
Q ss_pred CCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 229 YTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 229 ~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|+++.+++++++.|+ . +|+|++++||+++|++...
T Consensus 132 -~~~~~Y~~sK~a~~~~~~~la~e~-~--~irv~~i~pg~~~t~~~~~ 175 (230)
T PRK07041 132 -ASGVLQGAINAALEALARGLALEL-A--PVRVNTVSPGLVDTPLWSK 175 (230)
T ss_pred -CcchHHHHHHHHHHHHHHHHHHHh-h--CceEEEEeecccccHHHHh
Confidence 677889999999999999999999 5 3999999999999998654
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=216.38 Aligned_cols=191 Identities=24% Similarity=0.305 Sum_probs=162.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC-chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN-LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.+++++|||||++|||++++++|+++|++|++++|+ .+..++..+.++.... ..+.++.+|++|.+++++++++
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~ 78 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRP-----GSAAALQADLLDPDALPELVAA 78 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcC-----CceEEEEcCCCCHHHHHHHHHH
Confidence 456899999999999999999999999999999986 4445555555543211 2578899999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+.++++|++|||||.....++.+.+.+++++.+++|+.|++.+.++++|.|.++ .|++++++|..+
T Consensus 79 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~-~~~~~~~~~~~~----------- 146 (249)
T PRK09135 79 CVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQ-RGAIVNITDIHA----------- 146 (249)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhC-CeEEEEEeChhh-----------
Confidence 99999999999999998776677778889999999999999999999999998765 478998887543
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
..+.++...|++||++++.++++++.|+ .+ +|+++++.||++.|++...
T Consensus 147 ----~~~~~~~~~Y~~sK~~~~~~~~~l~~~~-~~-~i~~~~v~pg~~~~~~~~~ 195 (249)
T PRK09135 147 ----ERPLKGYPVYCAAKAALEMLTRSLALEL-AP-EVRVNAVAPGAILWPEDGN 195 (249)
T ss_pred ----cCCCCCchhHHHHHHHHHHHHHHHHHHH-CC-CCeEEEEEeccccCccccc
Confidence 2334677889999999999999999998 54 6999999999999998643
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-29 Score=218.26 Aligned_cols=189 Identities=27% Similarity=0.258 Sum_probs=155.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch-HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK-AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|+++||||++|||++++++|+++|++|++++|+.+ .++.+.+++... +.++.++++|++|++++.++++
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~ 76 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAA------GGRASAVGADLTDEESVAALMD 76 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHH
Confidence 467899999999999999999999999999999999764 455555555432 2367889999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.++++|++|||||..... ..+++..+++|+.+++++++.++|+|.+ .|+||++||..+....
T Consensus 77 ~~~~~~~~~d~vi~~ag~~~~~------~~~~~~~~~vn~~~~~~l~~~~~~~~~~--~~~iv~isS~~~~~~~------ 142 (248)
T PRK07806 77 TAREEFGGLDALVLNASGGMES------GMDEDYAMRLNRDAQRNLARAALPLMPA--GSRVVFVTSHQAHFIP------ 142 (248)
T ss_pred HHHHhCCCCcEEEECCCCCCCC------CCCcceeeEeeeHHHHHHHHHHHhhccC--CceEEEEeCchhhcCc------
Confidence 9999999999999999874321 1235678999999999999999999964 4799999996543211
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
...+.+.+..|++||++++.++++++.|+ ...||+|++|+||.+.|++..
T Consensus 143 ----~~~~~~~~~~Y~~sK~a~e~~~~~l~~~~-~~~~i~v~~v~pg~~~~~~~~ 192 (248)
T PRK07806 143 ----TVKTMPEYEPVARSKRAGEDALRALRPEL-AEKGIGFVVVSGDMIEGTVTA 192 (248)
T ss_pred ----cccCCccccHHHHHHHHHHHHHHHHHHHh-hccCeEEEEeCCccccCchhh
Confidence 01223556789999999999999999999 788999999999999998754
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=216.80 Aligned_cols=189 Identities=25% Similarity=0.336 Sum_probs=168.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|++|||||+++||.+++++|+++|++|++++|+.+..+++.+++... +.++..+.+|++|+++++++++++.+
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDA------GGSVIYLVADVTKEDEIADMIAAAAA 74 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEECCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999988888777666432 23688999999999999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
.++++|++|+|||.....+..+.+.+++++.+++|+.|++.+++.+++.|++.+.+++|++||..+..+.
T Consensus 75 ~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~---------- 144 (255)
T TIGR01963 75 EFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVAS---------- 144 (255)
T ss_pred hcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCC----------
Confidence 8899999999999876666677888999999999999999999999999988888899999998755543
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|+++|+++.+++++++.++ ...+|+++.++||.+.|++.+
T Consensus 145 -----~~~~~y~~sk~a~~~~~~~~~~~~-~~~~i~v~~i~pg~v~~~~~~ 189 (255)
T TIGR01963 145 -----PFKSAYVAAKHGLIGLTKVLALEV-AAHGITVNAICPGYVRTPLVE 189 (255)
T ss_pred -----CCCchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCccccHHHH
Confidence 566789999999999999999998 677999999999999998753
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-29 Score=215.34 Aligned_cols=183 Identities=31% Similarity=0.437 Sum_probs=161.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++++++||||++|||+++|++|+++|+ +|++++|+.+++++ . +.++.++.+|++|+++++++++
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~--------~-----~~~~~~~~~D~~~~~~~~~~~~ 69 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD--------L-----GPRVVPLQLDVTDPASVAAAAE 69 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh--------c-----CCceEEEEecCCCHHHHHHHHH
Confidence 46789999999999999999999999999 99999999776554 0 1368899999999999988777
Q ss_pred HHhcccCCccEEEEccCC-CCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGI-FSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~-~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
. ++++|++|||||. ....++.+.+.+++++.+++|+.+++.++++++|.|++++.+++|++||..++.+.
T Consensus 70 ~----~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~----- 140 (238)
T PRK08264 70 A----ASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNF----- 140 (238)
T ss_pred h----cCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCC-----
Confidence 5 4689999999998 55667788899999999999999999999999999998888999999998765544
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
++...|+++|++++++++.++.|+ .+.||++++++||.++|++.+..
T Consensus 141 ----------~~~~~y~~sK~a~~~~~~~l~~~~-~~~~i~~~~v~pg~v~t~~~~~~ 187 (238)
T PRK08264 141 ----------PNLGTYSASKAAAWSLTQALRAEL-APQGTRVLGVHPGPIDTDMAAGL 187 (238)
T ss_pred ----------CCchHhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeCCcccccccccC
Confidence 667789999999999999999999 77899999999999999986543
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-29 Score=214.65 Aligned_cols=189 Identities=29% Similarity=0.470 Sum_probs=165.7
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc-hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNL-KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
+||||++++||.++|++|+++|++|++++|+. +.++...+.+... +.++..+.+|++|+++++++++++.+.+
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 74 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAY------GVKALGVVCDVSDREDVKAVVEEIEEEL 74 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999875 4555555555432 2368899999999999999999999999
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
+++|++|||+|.....++.+.+.+++++.+++|+.+++.+++.+++++.+++.+++|++||..+..+.
T Consensus 75 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~------------ 142 (239)
T TIGR01830 75 GPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGN------------ 142 (239)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCC------------
Confidence 99999999999876666677888999999999999999999999999988778899999998776664
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~ 278 (298)
+....|+++|+++..++++++.++ ...|+++++++||.++|++....+
T Consensus 143 ---~~~~~y~~~k~a~~~~~~~l~~~~-~~~g~~~~~i~pg~~~~~~~~~~~ 190 (239)
T TIGR01830 143 ---AGQANYAASKAGVIGFTKSLAKEL-ASRNITVNAVAPGFIDTDMTDKLS 190 (239)
T ss_pred ---CCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEECCCCChhhhhcC
Confidence 667789999999999999999998 678999999999999999876554
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.5e-29 Score=216.77 Aligned_cols=183 Identities=29% Similarity=0.401 Sum_probs=162.0
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|+++||||++|||.++|+.|+++|++|++++|+.++++... + ..+..+++|++|.++++++++++.+.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~----~--------~~~~~~~~D~~~~~~~~~~~~~i~~~ 70 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN----S--------LGFTGILLDLDDPESVERAADEVIAL 70 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH----h--------CCCeEEEeecCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999987765442 1 13567899999999999999988764
Q ss_pred c-CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 146 L-GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 146 ~-g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
. +.+|.+|||+|.....++.+.+.+++++.+++|+.|++.+++.+++.|++.+.++||++||..+..+.
T Consensus 71 ~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~---------- 140 (256)
T PRK08017 71 TDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLIST---------- 140 (256)
T ss_pred cCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccccCC----------
Confidence 3 68999999999877677788899999999999999999999999999998888999999998766554
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|+++|++++.++++++.++ ...||+++++.||.+.|++.+.
T Consensus 141 -----~~~~~Y~~sK~~~~~~~~~l~~~~-~~~~i~v~~v~pg~~~t~~~~~ 186 (256)
T PRK08017 141 -----PGRGAYAASKYALEAWSDALRMEL-RHSGIKVSLIEPGPIRTRFTDN 186 (256)
T ss_pred -----CCccHHHHHHHHHHHHHHHHHHHH-hhcCCEEEEEeCCCcccchhhc
Confidence 667789999999999999999999 7789999999999999998654
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=212.36 Aligned_cols=194 Identities=29% Similarity=0.427 Sum_probs=167.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch-HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK-AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|++|||||+++||.+++++|+++|++|+++.|+.+ ..+...+.+... +.++.++.+|++++++++++++
T Consensus 3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~ 76 (249)
T PRK12825 3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEAL------GRRAQAVQADVTDKAALEAAVA 76 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc------CCceEEEECCcCCHHHHHHHHH
Confidence 345689999999999999999999999999888766544 344444444332 1368899999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.++++|++|||||.....++.+.+.+++++.+++|+.+++++++.+++.+.+.+.+++|++||..+..+.
T Consensus 77 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~------ 150 (249)
T PRK12825 77 AAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGW------ 150 (249)
T ss_pred HHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCC------
Confidence 99888899999999999877777778899999999999999999999999999998888899999998765443
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|+.+|+++.++++.++.++ .+.||+++.++||.+.|++....
T Consensus 151 ---------~~~~~y~~sK~~~~~~~~~~~~~~-~~~~i~~~~i~pg~~~~~~~~~~ 197 (249)
T PRK12825 151 ---------PGRSNYAAAKAGLVGLTKALAREL-AEYGITVNMVAPGDIDTDMKEAT 197 (249)
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEECCccCCccccc
Confidence 566789999999999999999999 77899999999999999997654
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-29 Score=215.98 Aligned_cols=181 Identities=17% Similarity=0.165 Sum_probs=137.4
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
|.....+++|+++||||++|||+++|++|+++|++|++++|+.....+ ... . . ....+.+|++|.+++.
T Consensus 6 ~~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~---~~~---~--~---~~~~~~~D~~~~~~~~ 74 (245)
T PRK12367 6 PMAQSTWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSE---SND---E--S---PNEWIKWECGKEESLD 74 (245)
T ss_pred hhhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhh---hhc---c--C---CCeEEEeeCCCHHHHH
Confidence 344456789999999999999999999999999999999998632111 100 0 0 1256789999998775
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC---CCCeEEEEcCCccccC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG---SPSRIINVNSVMHYVG 213 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~---~~g~Iv~isS~~~~~~ 213 (298)
+ .++++|+||||||+.. ..+.+.++|++.+++|+.|+++++++++|.|+++ +++.+++.+|.++..+
T Consensus 75 ~-------~~~~iDilVnnAG~~~---~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~~ 144 (245)
T PRK12367 75 K-------QLASLDVLILNHGINP---GGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQP 144 (245)
T ss_pred H-------hcCCCCEEEECCccCC---cCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccCC
Confidence 3 3578999999999753 2446889999999999999999999999999763 2334444455543221
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHH---HHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF---SSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l---~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|++||+|+..+ .+.++.|+ ...||+|+.++||+++|++..
T Consensus 145 ----------------~~~~~Y~aSKaal~~~~~l~~~l~~e~-~~~~i~v~~~~pg~~~t~~~~ 192 (245)
T PRK12367 145 ----------------ALSPSYEISKRLIGQLVSLKKNLLDKN-ERKKLIIRKLILGPFRSELNP 192 (245)
T ss_pred ----------------CCCchhHHHHHHHHHHHHHHHHHHHhh-cccccEEEEecCCCcccccCc
Confidence 3445699999998654 34555566 678999999999999999754
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-28 Score=207.80 Aligned_cols=187 Identities=20% Similarity=0.206 Sum_probs=160.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|+++||||++|||.++++.|+++|++|++++|++++++.+.+++... .++.++++|+++++++++++++
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY-------GNIHYVVGDVSSTESARNVIEK 74 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-------CCeEEEECCCCCHHHHHHHHHH
Confidence 357899999999999999999999999999999999988877765555431 2578899999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+...++.+|.+|+|+|.....+..+ .+++++.+++|+.+++.+.+.++|.|.+ .|++|++||..+...
T Consensus 75 ~~~~~~~id~ii~~ag~~~~~~~~~--~~~~~~~~~~n~~~~~~~~~~~~~~~~~--~~~iv~~ss~~~~~~-------- 142 (238)
T PRK05786 75 AAKVLNAIDGLVVTVGGYVEDTVEE--FSGLEEMLTNHIKIPLYAVNASLRFLKE--GSSIVLVSSMSGIYK-------- 142 (238)
T ss_pred HHHHhCCCCEEEEcCCCcCCCchHH--HHHHHHHHHHhchHHHHHHHHHHHHHhc--CCEEEEEecchhccc--------
Confidence 9888899999999999765444333 3889999999999999999999999865 479999999765321
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
+.+....|+++|+++..++++++.++ ...||++++|+||++.|++.
T Consensus 143 ------~~~~~~~Y~~sK~~~~~~~~~~~~~~-~~~gi~v~~i~pg~v~~~~~ 188 (238)
T PRK05786 143 ------ASPDQLSYAVAKAGLAKAVEILASEL-LGRGIRVNGIAPTTISGDFE 188 (238)
T ss_pred ------CCCCchHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCccCCCCC
Confidence 12556779999999999999999999 77899999999999999874
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=205.28 Aligned_cols=181 Identities=24% Similarity=0.324 Sum_probs=150.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|+++||||++|||.++|++|+++|++|++++|+.++++++. .. .+.++.+|+++.++++++++++..
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~----~~--------~~~~~~~D~~~~~~v~~~~~~~~~- 68 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQ----AL--------GAEALALDVADPASVAGLAWKLDG- 68 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHH----hc--------cceEEEecCCCHHHHHHHHHHhcC-
Confidence 68999999999999999999999999999999987665442 11 245789999999999998887643
Q ss_pred cCCccEEEEccCCCC--CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 146 LGPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 146 ~g~idilVnnag~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+++|++|||+|... ..+..+.+.+++++.+++|+.+++.++++++|.|.+ +.|++|++||..+..+..
T Consensus 69 -~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~g~iv~isS~~~~~~~~-------- 138 (222)
T PRK06953 69 -EALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEA-AGGVLAVLSSRMGSIGDA-------- 138 (222)
T ss_pred -CCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhc-cCCeEEEEcCcccccccc--------
Confidence 47999999999863 234567799999999999999999999999998866 458999999987665431
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+......|+++|+++.++++.++.++ . +++|++|+||+++|++.++
T Consensus 139 ----~~~~~~~Y~~sK~a~~~~~~~~~~~~-~--~i~v~~v~Pg~i~t~~~~~ 184 (222)
T PRK06953 139 ----TGTTGWLYRASKAALNDALRAASLQA-R--HATCIALHPGWVRTDMGGA 184 (222)
T ss_pred ----cCCCccccHHhHHHHHHHHHHHhhhc-c--CcEEEEECCCeeecCCCCC
Confidence 01122369999999999999999987 3 7999999999999999764
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=191.26 Aligned_cols=179 Identities=27% Similarity=0.426 Sum_probs=153.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.|++|||||+++||.+++++|+++ ++|++++|+.++.+++.++. ..+.++++|++|+++++++++++
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~-- 69 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAEL----------PGATPFPVDLTDPEAIAAAVEQL-- 69 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHh----------ccceEEecCCCCHHHHHHHHHhc--
Confidence 478999999999999999999999 99999999987765543322 14678899999999998887753
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
+++|++||++|.....++.+.+.+++++.+++|+.+++.+++.+++.|.++ .+++|++||..+..+.
T Consensus 70 --~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~v~~ss~~~~~~~---------- 136 (227)
T PRK08219 70 --GRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA-HGHVVFINSGAGLRAN---------- 136 (227)
T ss_pred --CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEcchHhcCcC----------
Confidence 579999999998776677788999999999999999999999999998876 4799999998765544
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
++...|+++|++++++++.++.++ ... |++++|+||.++|++...
T Consensus 137 -----~~~~~y~~~K~a~~~~~~~~~~~~-~~~-i~~~~i~pg~~~~~~~~~ 181 (227)
T PRK08219 137 -----PGWGSYAASKFALRALADALREEE-PGN-VRVTSVHPGRTDTDMQRG 181 (227)
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHh-cCC-ceEEEEecCCccchHhhh
Confidence 566789999999999999999998 544 999999999999987543
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-27 Score=194.09 Aligned_cols=190 Identities=17% Similarity=0.201 Sum_probs=152.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+|++|+||+|.|||..++..+..++-..+..+++....+ .+.+... .++.......|++.......+.+..+
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~--~~~L~v~-----~gd~~v~~~g~~~e~~~l~al~e~~r 77 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE--LEGLKVA-----YGDDFVHVVGDITEEQLLGALREAPR 77 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc--ccceEEE-----ecCCcceechHHHHHHHHHHHHhhhh
Confidence 4689999999999999988888877665554444433322 1111111 11345556678888888899999999
Q ss_pred cccCCccEEEEccCCCCCC---CCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCccc
Q 022369 144 GRLGPLHVLINNAGIFSIG---EPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~---~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~ 219 (298)
.++|+.|++|||||...+- ..+..+.++|++.+++|+++.+.+.+.++|.++++. .|.+||+||.++..
T Consensus 78 ~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~------- 150 (253)
T KOG1204|consen 78 KKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVR------- 150 (253)
T ss_pred hcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhc-------
Confidence 9999999999999987532 234678899999999999999999999999999873 68999999998554
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
|++.++.||++|+|.++|++.|+.|= +.+|+|.++.||.|||+|....
T Consensus 151 --------p~~~wa~yc~~KaAr~m~f~~lA~EE--p~~v~vl~~aPGvvDT~mq~~i 198 (253)
T KOG1204|consen 151 --------PFSSWAAYCSSKAARNMYFMVLASEE--PFDVRVLNYAPGVVDTQMQVCI 198 (253)
T ss_pred --------cccHHHHhhhhHHHHHHHHHHHhhcC--ccceeEEEccCCcccchhHHHH
Confidence 44999999999999999999999994 4799999999999999997543
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-25 Score=181.00 Aligned_cols=211 Identities=18% Similarity=0.183 Sum_probs=180.1
Q ss_pred CCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++||++||+|-. ..|+..+|+.|.++|++++.+..++ +++.-++++.+... ...+++||+++.+++++++
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~~------s~~v~~cDV~~d~~i~~~f 75 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEELG------SDLVLPCDVTNDESIDALF 75 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhcc------CCeEEecCCCCHHHHHHHH
Confidence 5789999999986 7999999999999999999998885 55555555544322 3578899999999999999
Q ss_pred HHHhcccCCccEEEEccCCCC----CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFS----IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~----~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++++++|++|+|||+.++.. .+.+.+.+.|+|...+++-.++..-++|++.|.|.. +|.||.++-..+...
T Consensus 76 ~~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~--ggSiltLtYlgs~r~-- 151 (259)
T COG0623 76 ATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNN--GGSILTLTYLGSERV-- 151 (259)
T ss_pred HHHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCC--CCcEEEEEeccceee--
Confidence 999999999999999999886 356778999999999999999999999999999987 689999988764444
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhhcc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPYFI 292 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~~~ 292 (298)
.|++...+.+|++++.-+|.|+.++ .++|||||+|+-|++.|=-...+. ...+......|++|
T Consensus 152 -------------vPnYNvMGvAKAaLEasvRyLA~dl-G~~gIRVNaISAGPIrTLAasgI~~f~~~l~~~e~~aPl~r 217 (259)
T COG0623 152 -------------VPNYNVMGVAKAALEASVRYLAADL-GKEGIRVNAISAGPIRTLAASGIGDFRKMLKENEANAPLRR 217 (259)
T ss_pred -------------cCCCchhHHHHHHHHHHHHHHHHHh-CccCeEEeeecccchHHHHhhccccHHHHHHHHHhhCCccC
Confidence 3888899999999999999999999 889999999999999998877664 34455556778877
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
- ++||
T Consensus 218 ~vt~ee 223 (259)
T COG0623 218 NVTIEE 223 (259)
T ss_pred CCCHHH
Confidence 6 5554
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=197.97 Aligned_cols=186 Identities=24% Similarity=0.178 Sum_probs=140.3
Q ss_pred HHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccCCccEEEEccCCCC
Q 022369 81 IARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFS 160 (298)
Q Consensus 81 ~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~ 160 (298)
+|++|+++|++|++++|+.++.+. ..++++|++|.++++++++++. +++|+||||||+..
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~~-----------------~~~~~~Dl~~~~~v~~~~~~~~---~~iD~li~nAG~~~ 60 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMTL-----------------DGFIQADLGDPASIDAAVAALP---GRIDALFNIAGVPG 60 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhhh-----------------hHhhcccCCCHHHHHHHHHHhc---CCCeEEEECCCCCC
Confidence 478999999999999999766421 1356899999999999998874 68999999999752
Q ss_pred CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc-------cc-----ccccC
Q 022369 161 IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN-------VV-----SGRRK 228 (298)
Q Consensus 161 ~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~-------~~-----~~~~~ 228 (298)
.+.+++.+++|+.+++.+++.++|+|.+ .|+||++||.+++......+... .. ....+
T Consensus 61 --------~~~~~~~~~vN~~~~~~l~~~~~~~~~~--~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (241)
T PRK12428 61 --------TAPVELVARVNFLGLRHLTEALLPRMAP--GGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHP 130 (241)
T ss_pred --------CCCHHHhhhhchHHHHHHHHHHHHhccC--CcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccC
Confidence 1358999999999999999999999964 48999999998764211100000 00 00134
Q ss_pred CCCcccchhhHHHHHHHHHHHH-HHcCCCCCcEEEEeeCCccccCccCCchHHH--HHH-HHhhhhccc-CCCC
Q 022369 229 YTSLMGYSGSKLAQIKFSSILQ-KRLPAESGINVVCVSPGIVSTNVARDLPKIV--QAA-YHLIPYFIF-NPQE 297 (298)
Q Consensus 229 ~~~~~~Y~asKaa~~~l~~~l~-~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~--~~~-~~~~p~~~~-~pe~ 297 (298)
.+....|++||+|+.+|+++++ .|+ .++||+||+|+||.|.|+|.+...+.. +.. ....|+.++ +|||
T Consensus 131 ~~~~~~Y~~sK~a~~~~~~~la~~e~-~~~girvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~ 203 (241)
T PRK12428 131 VALATGYQLSKEALILWTMRQAQPWF-GARGIRVNCVAPGPVFTPILGDFRSMLGQERVDSDAKRMGRPATADE 203 (241)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhh-hccCeEEEEeecCCccCcccccchhhhhhHhhhhcccccCCCCCHHH
Confidence 5777889999999999999999 999 778999999999999999976543211 111 123466665 6654
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-25 Score=239.07 Aligned_cols=183 Identities=19% Similarity=0.140 Sum_probs=156.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCc--------------hHH--------------------------
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNL--------------KAA-------------------------- 102 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~--------------~~~-------------------------- 102 (298)
+|+++|||||++|||.++|++|+++ |++|++++|+. ..+
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 5799999999999999999999998 69999999982 011
Q ss_pred -------HHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHH
Q 022369 103 -------NELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEH 175 (298)
Q Consensus 103 -------~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~ 175 (298)
++..+++. ..|.++.++.||++|.++++++++++.+. ++||+||||||+...+.+.+.+.++|+++
T Consensus 2076 ~~~~~ei~~~la~l~------~~G~~v~y~~~DVtD~~av~~av~~v~~~-g~IDgVVhnAGv~~~~~i~~~t~e~f~~v 2148 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFK------AAGASAEYASADVTNSVSVAATVQPLNKT-LQITGIIHGAGVLADKHIQDKTLEEFNAV 2148 (2582)
T ss_pred cchhHHHHHHHHHHH------hcCCcEEEEEccCCCHHHHHHHHHHHHHh-CCCcEEEECCccCCCCCcccCCHHHHHHH
Confidence 11111111 12357899999999999999999999887 68999999999988888999999999999
Q ss_pred HhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCC
Q 022369 176 MQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPA 255 (298)
Q Consensus 176 ~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~ 255 (298)
+++|+.|.+++++++.+.+. ++||++||.+++.+. +++..|+++|++++.|++.++.++ .
T Consensus 2149 ~~~nv~G~~~Ll~al~~~~~----~~IV~~SSvag~~G~---------------~gqs~YaaAkaaL~~la~~la~~~-~ 2208 (2582)
T TIGR02813 2149 YGTKVDGLLSLLAALNAENI----KLLALFSSAAGFYGN---------------TGQSDYAMSNDILNKAALQLKALN-P 2208 (2582)
T ss_pred HHHHHHHHHHHHHHHHHhCC----CeEEEEechhhcCCC---------------CCcHHHHHHHHHHHHHHHHHHHHc-C
Confidence 99999999999999877554 489999999988776 777889999999999999999998 3
Q ss_pred CCCcEEEEeeCCccccCccC
Q 022369 256 ESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 256 ~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+++|++|+||+++|+|..
T Consensus 2209 --~irV~sI~wG~wdtgm~~ 2226 (2582)
T TIGR02813 2209 --SAKVMSFNWGPWDGGMVN 2226 (2582)
T ss_pred --CcEEEEEECCeecCCccc
Confidence 599999999999999964
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=203.89 Aligned_cols=174 Identities=20% Similarity=0.219 Sum_probs=135.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.++||+++||||++|||+++|++|+++|++|++++|+.+++++..+ .. ...+..+.+|++|++++.+.
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~---~~------~~~v~~v~~Dvsd~~~v~~~--- 242 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEIN---GE------DLPVKTLHWQVGQEAALAEL--- 242 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh---hc------CCCeEEEEeeCCCHHHHHHH---
Confidence 3578999999999999999999999999999999999776543221 11 12467889999999887554
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCC----CeEEEEcCCccccCCCCc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSP----SRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~----g~Iv~isS~~~~~~~~~~ 217 (298)
++++|++|||||+... .+.+.+++++.+++|+.|++.++++++|.|++++. +.+||+|+ ++ ...
T Consensus 243 ----l~~IDiLInnAGi~~~---~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ss-a~-~~~--- 310 (406)
T PRK07424 243 ----LEKVDILIINHGINVH---GERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSE-AE-VNP--- 310 (406)
T ss_pred ----hCCCCEEEECCCcCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcc-cc-ccC---
Confidence 3579999999998542 36788999999999999999999999999987642 45677765 22 111
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|++||+|+.+|++ ++++. .++.|..++||++.|++..
T Consensus 311 ------------~~~~~Y~ASKaAl~~l~~-l~~~~---~~~~I~~i~~gp~~t~~~~ 352 (406)
T PRK07424 311 ------------AFSPLYELSKRALGDLVT-LRRLD---APCVVRKLILGPFKSNLNP 352 (406)
T ss_pred ------------CCchHHHHHHHHHHHHHH-HHHhC---CCCceEEEEeCCCcCCCCc
Confidence 334579999999999985 44443 3577788899999999854
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=186.70 Aligned_cols=204 Identities=25% Similarity=0.311 Sum_probs=176.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcC-----CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESG-----AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G-----~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.|+++|||++||||.++|.+|.+.. .++++++|+.++.++++..+.+.++.. ..++.++++|+++..++.++.
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~--~i~~~yvlvD~sNm~Sv~~A~ 80 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKS--TIEVTYVLVDVSNMQSVFRAS 80 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCc--eeEEEEEEEehhhHHHHHHHH
Confidence 4899999999999999999998764 367888999999999999999988754 358999999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCC---------------------------CccChhhHHHHHhhhchHHHHHHHHHhh
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEP---------------------------QKFSKDGYEEHMQVNHLAPALLSILLFP 192 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~---------------------------~~~~~~~~~~~~~vN~~~~~~l~~~~lp 192 (298)
.+++++|.++|.+..|||+.....+ -..+.|+...+|+.|++|+|.+.+.+.|
T Consensus 81 ~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~p 160 (341)
T KOG1478|consen 81 KDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEP 160 (341)
T ss_pred HHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhh
Confidence 9999999999999999998542111 1357888999999999999999999999
Q ss_pred hhhcCCCCeEEEEcCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 193 SLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 193 ~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
++..++...+|.+||..+.-.....+|++-..+ ..+|+.||.+++-++-++.+.+ .+.|+.-++++||..-|.
T Consensus 161 ll~~~~~~~lvwtSS~~a~kk~lsleD~q~~kg------~~pY~sSKrl~DlLh~A~~~~~-~~~g~~qyvv~pg~~tt~ 233 (341)
T KOG1478|consen 161 LLCHSDNPQLVWTSSRMARKKNLSLEDFQHSKG------KEPYSSSKRLTDLLHVALNRNF-KPLGINQYVVQPGIFTTN 233 (341)
T ss_pred HhhcCCCCeEEEEeecccccccCCHHHHhhhcC------CCCcchhHHHHHHHHHHHhccc-cccchhhhcccCceeecc
Confidence 999888779999999987766666666555544 4458999999999999999998 888999999999999999
Q ss_pred ccCCc
Q 022369 273 VARDL 277 (298)
Q Consensus 273 ~~~~~ 277 (298)
+....
T Consensus 234 ~~~~~ 238 (341)
T KOG1478|consen 234 SFSEY 238 (341)
T ss_pred hhhhh
Confidence 88764
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-24 Score=174.50 Aligned_cols=175 Identities=21% Similarity=0.237 Sum_probs=145.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHH---HHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELI---QKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
|+++||||++|||++++++|+++|+ .|++++|+.+..+... +++++. +.++.++.+|+++++++++++++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 74 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEAL------GAEVTVVACDVADRAALAAALAA 74 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhc------CCeEEEEECCCCCHHHHHHHHHH
Confidence 5799999999999999999999997 6888898876544432 233221 24788999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+...++++|.+|||||.....++.+.+.+++++.+++|+.+++.+.+++.+ .+.+++|++||..+..+.
T Consensus 75 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~ii~~ss~~~~~~~------- 143 (180)
T smart00822 75 IPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRD----LPLDFFVLFSSVAGVLGN------- 143 (180)
T ss_pred HHHHcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhcc----CCcceEEEEccHHHhcCC-------
Confidence 998889999999999987766778889999999999999999999998843 456899999998766554
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVS 270 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~ 270 (298)
+....|+++|+++..+++.++. .|+++.++.||++.
T Consensus 144 --------~~~~~y~~sk~~~~~~~~~~~~-----~~~~~~~~~~g~~~ 179 (180)
T smart00822 144 --------PGQANYAAANAFLDALAAHRRA-----RGLPATSINWGAWA 179 (180)
T ss_pred --------CCchhhHHHHHHHHHHHHHHHh-----cCCceEEEeecccc
Confidence 6677899999999998877643 46889999999875
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-21 Score=171.61 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=134.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++||++|||||+++||.+++++|+++| ++|++++|+..+...+.+.+ .. .++.++.+|++|.+++.++++
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~----~~----~~~~~v~~Dl~d~~~l~~~~~ 73 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKF----PA----PCLRFFIGDVRDKERLTRALR 73 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHh----CC----CcEEEEEccCCCHHHHHHHHh
Confidence 467999999999999999999999986 78999999866554433222 11 268889999999998887764
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++|++||+||.... +..+ .+.++.+++|+.|+.++++++.+. +.++||++||....
T Consensus 74 -------~iD~Vih~Ag~~~~-~~~~---~~~~~~~~~Nv~g~~~ll~aa~~~----~~~~iV~~SS~~~~--------- 129 (324)
T TIGR03589 74 -------GVDYVVHAAALKQV-PAAE---YNPFECIRTNINGAQNVIDAAIDN----GVKRVVALSTDKAA--------- 129 (324)
T ss_pred -------cCCEEEECcccCCC-chhh---cCHHHHHHHHHHHHHHHHHHHHHc----CCCEEEEEeCCCCC---------
Confidence 48999999997532 2222 233578999999999999998752 44699999996421
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
.+...|++||++.+.++++++.+. ...|++++++.||.|.++-.
T Consensus 130 ---------~p~~~Y~~sK~~~E~l~~~~~~~~-~~~gi~~~~lR~g~v~G~~~ 173 (324)
T TIGR03589 130 ---------NPINLYGATKLASDKLFVAANNIS-GSKGTRFSVVRYGNVVGSRG 173 (324)
T ss_pred ---------CCCCHHHHHHHHHHHHHHHHHhhc-cccCcEEEEEeecceeCCCC
Confidence 223569999999999999998887 77899999999999998753
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-21 Score=157.96 Aligned_cols=173 Identities=21% Similarity=0.275 Sum_probs=134.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc---hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL---KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
++|||||.+|||..+|+.|+++|+ +|++++|+. .+.++..+++++. +.++.+++||++|+++++++++++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~------g~~v~~~~~Dv~d~~~v~~~~~~~ 75 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESA------GARVEYVQCDVTDPEAVAAALAQL 75 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHT------T-EEEEEE--TTSHHHHHHHHHTS
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhC------CCceeeeccCccCHHHHHHHHHHH
Confidence 789999999999999999999987 999999993 2445566666653 358999999999999999999999
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.+++++||.+||+||.....++.+.+.++++..+...+.|..++.+.+.+ ..-..+|..||.++..+.
T Consensus 76 ~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~----~~l~~~i~~SSis~~~G~-------- 143 (181)
T PF08659_consen 76 RQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALEN----RPLDFFILFSSISSLLGG-------- 143 (181)
T ss_dssp HTTSS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTT----TTTSEEEEEEEHHHHTT---------
T ss_pred HhccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhc----CCCCeEEEECChhHhccC--------
Confidence 99999999999999998888899999999999999999999999998766 344699999999998887
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcc
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIV 269 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v 269 (298)
+++..|+++.++++.|++..+.. |.++.+|+-|..
T Consensus 144 -------~gq~~YaaAN~~lda~a~~~~~~-----g~~~~sI~wg~W 178 (181)
T PF08659_consen 144 -------PGQSAYAAANAFLDALARQRRSR-----GLPAVSINWGAW 178 (181)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHT-----TSEEEEEEE-EB
T ss_pred -------cchHhHHHHHHHHHHHHHHHHhC-----CCCEEEEEcccc
Confidence 78888999999999998876442 566878776654
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=177.55 Aligned_cols=182 Identities=22% Similarity=0.204 Sum_probs=140.0
Q ss_pred CCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhc-CCC--CCccEEEEEcCCCCHHH
Q 022369 58 LPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWS-GKG--LPLNIEAMELDLLSLDS 134 (298)
Q Consensus 58 ~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~D~s~~~~ 134 (298)
......+||++|||||+||||++++++|+++|++|++++|+.++++.+.+++.+... ..+ ...++.++.+|++|.++
T Consensus 73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es 152 (576)
T PLN03209 73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ 152 (576)
T ss_pred cccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence 344556789999999999999999999999999999999999998887776643210 000 01358899999999988
Q ss_pred HHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccc-cC
Q 022369 135 VVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY-VG 213 (298)
Q Consensus 135 v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~-~~ 213 (298)
+.+. ++++|+||||+|.... ...++...+++|+.|+.++++++.. .+.++||++||..+. .+
T Consensus 153 I~~a-------LggiDiVVn~AG~~~~------~v~d~~~~~~VN~~Gt~nLl~Aa~~----agVgRIV~VSSiga~~~g 215 (576)
T PLN03209 153 IGPA-------LGNASVVICCIGASEK------EVFDVTGPYRIDYLATKNLVDAATV----AKVNHFILVTSLGTNKVG 215 (576)
T ss_pred HHHH-------hcCCCEEEEccccccc------cccchhhHHHHHHHHHHHHHHHHHH----hCCCEEEEEccchhcccC
Confidence 7653 3679999999997531 1124778899999999999998754 355799999998642 11
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
. +. ..|. +|+++..+.+.+..++ ...||+++.|+||++.|++.
T Consensus 216 ~---------------p~-~~~~-sk~~~~~~KraaE~~L-~~sGIrvTIVRPG~L~tp~d 258 (576)
T PLN03209 216 F---------------PA-AILN-LFWGVLCWKRKAEEAL-IASGLPYTIVRPGGMERPTD 258 (576)
T ss_pred c---------------cc-cchh-hHHHHHHHHHHHHHHH-HHcCCCEEEEECCeecCCcc
Confidence 1 11 1243 7888888889999999 77899999999999998764
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-20 Score=166.18 Aligned_cols=189 Identities=13% Similarity=0.092 Sum_probs=141.1
Q ss_pred CCCCEEEEeCCCCchHHH--HHHHHHHcCCEEEEEEcCchHHH------------HHHHHHHHhhcCCCCCccEEEEEcC
Q 022369 63 VNDLTCIVTGSTSGIGRE--IARQLAESGAHVVMAVRNLKAAN------------ELIQKWQEEWSGKGLPLNIEAMELD 128 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~--~a~~la~~G~~Vil~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~D 128 (298)
-.+|++||||+++|||.+ +|++| +.|++|+++++..+..+ .+.+.+.+ .+..+..+.||
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~------~G~~a~~i~~D 111 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKA------AGLYAKSINGD 111 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHh------cCCceEEEEcC
Confidence 346999999999999999 89999 99999999986432222 22223322 12357789999
Q ss_pred CCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCC-----------------C----C-------------ccChhhHHH
Q 022369 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGE-----------------P----Q-------------KFSKDGYEE 174 (298)
Q Consensus 129 ~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~-----------------~----~-------------~~~~~~~~~ 174 (298)
++++++++++++++.+++|+||+||||+|...... + . ..+.++++.
T Consensus 112 Vss~E~v~~lie~I~e~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~~~~~d~~~~~i~~~s~~~~~~~ei~~ 191 (398)
T PRK13656 112 AFSDEIKQKVIELIKQDLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYTGKTLDTDKDVIIEVTVEPATEEEIAD 191 (398)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCccCCCCCcccCceeecccccccccccCCcccccccceeEEEEeeCCHHHHHH
Confidence 99999999999999999999999999999873211 1 1 133334443
Q ss_pred HHhhhchHH-----HHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccccCCCCc--ccchhhHHHHHHHHH
Q 022369 175 HMQVNHLAP-----ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSL--MGYSGSKLAQIKFSS 247 (298)
Q Consensus 175 ~~~vN~~~~-----~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~asKaa~~~l~~ 247 (298)
+ ++++|. +.=.+...+.|. .++++|..|.... ...+|.+ ..-+.+|++++.-++
T Consensus 192 T--v~vMggedw~~Wi~al~~a~lla--~g~~~va~TY~G~---------------~~t~p~Y~~g~mG~AKa~LE~~~r 252 (398)
T PRK13656 192 T--VKVMGGEDWELWIDALDEAGVLA--EGAKTVAYSYIGP---------------ELTHPIYWDGTIGKAKKDLDRTAL 252 (398)
T ss_pred H--HHhhccchHHHHHHHHHhccccc--CCcEEEEEecCCc---------------ceeecccCCchHHHHHHHHHHHHH
Confidence 3 344454 233445555554 3689999999753 3334665 478999999999999
Q ss_pred HHHHHcCCCCCcEEEEeeCCccccCccCCch
Q 022369 248 ILQKRLPAESGINVVCVSPGIVSTNVARDLP 278 (298)
Q Consensus 248 ~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~ 278 (298)
.|+.++ ++.|||+|++.+|.+.|.-...+|
T Consensus 253 ~La~~L-~~~giran~i~~g~~~T~Ass~Ip 282 (398)
T PRK13656 253 ALNEKL-AAKGGDAYVSVLKAVVTQASSAIP 282 (398)
T ss_pred HHHHHh-hhcCCEEEEEecCcccchhhhcCC
Confidence 999999 788999999999999999887764
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=152.63 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=116.5
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
..+++|+++||||++|||.++|+.|+++|++|++++|+.+.+++..+++.+. +.++.++++|+++.++++++++
T Consensus 12 ~~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~v~~~v~ 85 (169)
T PRK06720 12 MKLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNL------GGEALFVSYDMEKQGDWQRVIS 85 (169)
T ss_pred cccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHH
Confidence 3468999999999999999999999999999999999988887777776532 1357788999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCC-CCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-------CCeEEEEcCCcc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIG-EPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-------PSRIINVNSVMH 210 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~-~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-------~g~Iv~isS~~~ 210 (298)
++.+.+|++|++|||||+.... ++.+.+.++ ++ .+|+.++++.++.+.+.|.+++ .||+..||+.++
T Consensus 86 ~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
T PRK06720 86 ITLNAFSRIDMLFQNAGLYKIDSIFSRQQEND-SN--VLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQ 160 (169)
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccccchhH-hh--ceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccc
Confidence 9999999999999999987643 444445444 44 6777788999999999988753 578888888654
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-20 Score=167.65 Aligned_cols=189 Identities=17% Similarity=0.068 Sum_probs=142.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
++||++|||||+|+||.++|++|+++|++|++++|+........+.+.. +.++.++.+|++|.+++.+++++.
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~ 74 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNL-------AKKIEDHFGDIRDAAKLRKAIAEF 74 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhh-------cCCceEEEccCCCHHHHHHHHhhc
Confidence 3578999999999999999999999999999999987655444333321 125778899999999999888864
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
++|++||+||... ...+.++++..+++|+.+++++++++.. + ...+++|++||...+..... ...
T Consensus 75 -----~~d~vih~A~~~~----~~~~~~~~~~~~~~N~~g~~~ll~a~~~-~--~~~~~iv~~SS~~vyg~~~~---~~~ 139 (349)
T TIGR02622 75 -----KPEIVFHLAAQPL----VRKSYADPLETFETNVMGTVNLLEAIRA-I--GSVKAVVNVTSDKCYRNDEW---VWG 139 (349)
T ss_pred -----CCCEEEECCcccc----cccchhCHHHHHHHhHHHHHHHHHHHHh-c--CCCCEEEEEechhhhCCCCC---CCC
Confidence 6899999999642 2345567888999999999999998743 1 22469999999765432100 000
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCC---CCcEEEEeeCCccccCc
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAE---SGINVVCVSPGIVSTNV 273 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~---~gI~v~~v~Pg~v~T~~ 273 (298)
.....+..+...|+.||.+.+.+++.++.++... .|++++++.|+.+..|-
T Consensus 140 ~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~ 193 (349)
T TIGR02622 140 YRETDPLGGHDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGG 193 (349)
T ss_pred CccCCCCCCCCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence 1122233456789999999999999998887222 48999999999999874
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=162.98 Aligned_cols=190 Identities=17% Similarity=0.091 Sum_probs=139.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++|++|||||+|+||.+++++|+++|++|++++|+.+..+........ .+...++.++.+|++|+++++++++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~~D~~d~~~~~~~~~--- 76 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLAL----DGAKERLKLFKADLLDEGSFELAID--- 76 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhc----cCCCCceEEEeCCCCCchHHHHHHc---
Confidence 378999999999999999999999999999999987765544222111 0111368889999999998887765
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc-ccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT-EDMNV 222 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~-~~~~~ 222 (298)
++|++|||||... ...+.+.+++.+++|+.+++++++++.+.+ +.++||++||..++.+.... .....
T Consensus 77 ----~~d~vih~A~~~~----~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~---~~~~iv~~SS~~~~~~~~~~~~~~~~ 145 (325)
T PLN02989 77 ----GCETVFHTASPVA----ITVKTDPQVELINPAVNGTINVLRTCTKVS---SVKRVILTSSMAAVLAPETKLGPNDV 145 (325)
T ss_pred ----CCCEEEEeCCCCC----CCCCCChHHHHHHHHHHHHHHHHHHHHHcC---CceEEEEecchhheecCCccCCCCCc
Confidence 4899999999642 123445688999999999999999988754 24699999998776542110 00001
Q ss_pred cccccCCC------CcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 223 VSGRRKYT------SLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 223 ~~~~~~~~------~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.....+.. ....|+.||.+.+.+++.++.+. |+++..+.|+.+..|...
T Consensus 146 ~~E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilR~~~vyGp~~~ 200 (325)
T PLN02989 146 VDETFFTNPSFAEERKQWYVLSKTLAEDAAWRFAKDN----EIDLIVLNPGLVTGPILQ 200 (325)
T ss_pred cCcCCCCchhHhcccccchHHHHHHHHHHHHHHHHHc----CCeEEEEcCCceeCCCCC
Confidence 11111111 13569999999999888877664 799999999999988754
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-18 Score=155.92 Aligned_cols=192 Identities=15% Similarity=0.017 Sum_probs=133.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHH-HHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAAN-ELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
+.++|++|||||+++||.+++++|+++|++|++++|+.+... ...+.+..... ..+.++.++.+|++|.+++.++++
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~ 80 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPH--PNKARMKLHYGDLSDASSLRRWLD 80 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccc--cccCceEEEEecCCCHHHHHHHHH
Confidence 567899999999999999999999999999999998754321 11122211000 011368899999999999998888
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCC-CeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSP-SRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~-g~Iv~isS~~~~~~~~~~~~ 219 (298)
.. ++|++||+|+..... ...+..+..+++|+.|+.++++++.+.+.+++. -++|++||...+.....
T Consensus 81 ~~-----~~d~Vih~A~~~~~~----~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~--- 148 (340)
T PLN02653 81 DI-----KPDEVYNLAAQSHVA----VSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP--- 148 (340)
T ss_pred Hc-----CCCEEEECCcccchh----hhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC---
Confidence 74 599999999975421 233456778899999999999999988765321 27888988643332111
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCC--CCCcEEEEeeCCcc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPA--ESGINVVCVSPGIV 269 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~--~~gI~v~~v~Pg~v 269 (298)
......+..+...|+.||.+.+.++++++.++.- ..++.++.+.|+.-
T Consensus 149 --~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~ 198 (340)
T PLN02653 149 --PQSETTPFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRG 198 (340)
T ss_pred --CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCC
Confidence 1122233445678999999999999999887621 12344455566643
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-17 Score=150.82 Aligned_cols=192 Identities=19% Similarity=0.141 Sum_probs=137.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
...++++|||||+|.||.+++++|+++|++|++++|+.++.+.+.+.+.. +.++.++.+|+++.+++.++++
T Consensus 7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~- 78 (353)
T PLN02896 7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE-------GDRLRLFRADLQEEGSFDEAVK- 78 (353)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc-------CCeEEEEECCCCCHHHHHHHHc-
Confidence 34578999999999999999999999999999999987766555443321 1368889999999998877764
Q ss_pred HhcccCCccEEEEccCCCCCCC-CCccChhhH--HHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGE-PQKFSKDGY--EEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~-~~~~~~~~~--~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++|++||+|+...... ....+.+.+ ..++++|+.|+.++++++.+.. +.++||++||.+.+.......
T Consensus 79 ------~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~---~~~~~v~~SS~~vyg~~~~~~ 149 (353)
T PLN02896 79 ------GCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSK---TVKRVVFTSSISTLTAKDSNG 149 (353)
T ss_pred ------CCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcC---CccEEEEEechhhccccccCC
Confidence 4899999999754321 122233333 3567888899999999876642 235999999987664321100
Q ss_pred cc-cccccc--c-------CCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 219 DM-NVVSGR--R-------KYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 219 ~~-~~~~~~--~-------~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
+. ..+... . +.+....|+.||.+.+.+++.++.+. |+++..+.|+.|..|..
T Consensus 150 ~~~~~~~E~~~~p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lR~~~vyGp~~ 211 (353)
T PLN02896 150 RWRAVVDETCQTPIDHVWNTKASGWVYVLSKLLTEEAAFKYAKEN----GIDLVSVITTTVAGPFL 211 (353)
T ss_pred CCCCccCcccCCcHHHhhccCCCCccHHHHHHHHHHHHHHHHHHc----CCeEEEEcCCcccCCCc
Confidence 00 001111 0 12334579999999999988877665 79999999999988864
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-17 Score=147.88 Aligned_cols=186 Identities=14% Similarity=0.065 Sum_probs=128.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH--HHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA--ANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.+|+++||||+|+||.+++++|+++|++|+++.|+.+. ..+....+.. .+.++.++.+|++|.+++.+++.
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~------~~~~~~~~~~Dl~d~~~~~~~l~- 77 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSC------EEERLKVFDVDPLDYHSILDALK- 77 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhccc------CCCceEEEEecCCCHHHHHHHHc-
Confidence 46899999999999999999999999999999996432 2222222211 11368889999999998865543
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC-CCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF-VDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~-~~~~~~ 220 (298)
..|.+++.++... +.+ +.+++.+++|+.|++++++++.+.+ +.++||++||..++... ....+.
T Consensus 78 ------~~d~v~~~~~~~~-----~~~-~~~~~~~~~nv~gt~~ll~aa~~~~---~v~riV~~SS~~a~~~~~~~~~~~ 142 (297)
T PLN02583 78 ------GCSGLFCCFDPPS-----DYP-SYDEKMVDVEVRAAHNVLEACAQTD---TIEKVVFTSSLTAVIWRDDNISTQ 142 (297)
T ss_pred ------CCCEEEEeCccCC-----ccc-ccHHHHHHHHHHHHHHHHHHHHhcC---CccEEEEecchHheecccccCCCC
Confidence 4788887665321 111 2467899999999999999998764 23699999998765421 100000
Q ss_pred cccccccCC------CCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 221 NVVSGRRKY------TSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ~~~~~~~~~------~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
...+...+. +....|+.||...+.++..++.+. |+++++++|+.|.+|...
T Consensus 143 ~~~~E~~~~~~~~~~~~~~~Y~~sK~~aE~~~~~~~~~~----gi~~v~lrp~~v~Gp~~~ 199 (297)
T PLN02583 143 KDVDERSWSDQNFCRKFKLWHALAKTLSEKTAWALAMDR----GVNMVSINAGLLMGPSLT 199 (297)
T ss_pred CCCCcccCCCHHHHhhcccHHHHHHHHHHHHHHHHHHHh----CCcEEEEcCCcccCCCCC
Confidence 001111110 111259999999988887776553 799999999999988643
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-17 Score=148.71 Aligned_cols=190 Identities=19% Similarity=0.129 Sum_probs=133.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
-.||+++||||+|+||.+++++|+++|++|+++.|+.++.+...+..... +...++.++.+|+++++++.++++
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~~Dl~~~~~~~~~~~-- 76 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALD----GAKERLKLFKADLLEESSFEQAIE-- 76 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhcc----CCCCceEEEecCCCCcchHHHHHh--
Confidence 35789999999999999999999999999999999877654432222110 111368889999999998887765
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcccc-CCCCccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYV-GFVDTEDMN 221 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~-~~~~~~~~~ 221 (298)
.+|++||+|+..... ..+..++.+++|+.|+.++++++... .+-++||++||.+.+. +......-.
T Consensus 77 -----~~d~vih~A~~~~~~-----~~~~~~~~~~~nv~gt~~ll~~~~~~---~~v~rvV~~SS~~~~~~~~~~~~~~~ 143 (322)
T PLN02986 77 -----GCDAVFHTASPVFFT-----VKDPQTELIDPALKGTINVLNTCKET---PSVKRVILTSSTAAVLFRQPPIEAND 143 (322)
T ss_pred -----CCCEEEEeCCCcCCC-----CCCchhhhhHHHHHHHHHHHHHHHhc---CCccEEEEecchhheecCCccCCCCC
Confidence 489999999964211 11234567899999999999986542 1235999999987642 211000000
Q ss_pred ccccccC-C-----CCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 222 VVSGRRK-Y-----TSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 222 ~~~~~~~-~-----~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
..+.... . .....|++||.+.+.+++.+..+. |+++.++.|+.|.+|...
T Consensus 144 ~~~E~~~~~p~~~~~~~~~Y~~sK~~aE~~~~~~~~~~----~~~~~~lrp~~v~Gp~~~ 199 (322)
T PLN02986 144 VVDETFFSDPSLCRETKNWYPLSKILAENAAWEFAKDN----GIDMVVLNPGFICGPLLQ 199 (322)
T ss_pred CcCcccCCChHHhhccccchHHHHHHHHHHHHHHHHHh----CCeEEEEcccceeCCCCC
Confidence 0111100 0 124669999998888888776654 799999999999998753
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.1e-17 Score=148.30 Aligned_cols=189 Identities=15% Similarity=0.097 Sum_probs=133.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+.++++++||||+|+||.+++++|+++|++|++++|+.+....... +.. .... .++.++.+|++|.+++.++++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~-~~~~---~~~~~~~~Dl~d~~~~~~~~~- 79 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRA-LQEL---GDLKIFGADLTDEESFEAPIA- 79 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHh-cCCC---CceEEEEcCCCChHHHHHHHh-
Confidence 4567899999999999999999999999999999988655433221 111 1111 257889999999998877654
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC-----
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD----- 216 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~----- 216 (298)
++|++||+|+... .. ..+..+..+++|+.++.++++++.... +.++||++||.+.+.....
T Consensus 80 ------~~d~vih~A~~~~---~~--~~~~~~~~~~~nv~g~~~ll~a~~~~~---~~~~~v~~SS~~~~g~~~~~~~~~ 145 (338)
T PLN00198 80 ------GCDLVFHVATPVN---FA--SEDPENDMIKPAIQGVHNVLKACAKAK---SVKRVILTSSAAAVSINKLSGTGL 145 (338)
T ss_pred ------cCCEEEEeCCCCc---cC--CCChHHHHHHHHHHHHHHHHHHHHhcC---CccEEEEeecceeeeccCCCCCCc
Confidence 5899999998531 11 123345678999999999999976532 3469999999876542210
Q ss_pred ---cccccccc-cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 217 ---TEDMNVVS-GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 217 ---~~~~~~~~-~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
...+.... ...+.++...|+.||.+.+.+++.++.+. |+++..+.|+.|..|-.
T Consensus 146 ~~~E~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~~R~~~vyGp~~ 203 (338)
T PLN00198 146 VMNEKNWTDVEFLTSEKPPTWGYPASKTLAEKAAWKFAEEN----NIDLITVIPTLMAGPSL 203 (338)
T ss_pred eeccccCCchhhhhhcCCccchhHHHHHHHHHHHHHHHHhc----CceEEEEeCCceECCCc
Confidence 00000000 00122455679999999999988877664 79999999999988853
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-17 Score=152.63 Aligned_cols=199 Identities=13% Similarity=0.098 Sum_probs=137.7
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch---H----HH---------HHHHHHHHhhcCCCCCc
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK---A----AN---------ELIQKWQEEWSGKGLPL 120 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~---~----~~---------~~~~~~~~~~~~~~~~~ 120 (298)
+.....++++++|||||+|+||.+++++|+++|++|++++|... . .+ +..+.+... . +.
T Consensus 39 ~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~----~~ 113 (442)
T PLN02572 39 PGSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEV-S----GK 113 (442)
T ss_pred CCCCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHh-h----CC
Confidence 33455778899999999999999999999999999999875311 0 00 011111111 0 12
Q ss_pred cEEEEEcCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCC
Q 022369 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPS 200 (298)
Q Consensus 121 ~~~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g 200 (298)
++.++.+|++|.+.+.+++++. ++|++||+|+... .+....+.++++..+++|+.|++++++++...- -+.
T Consensus 114 ~v~~v~~Dl~d~~~v~~~l~~~-----~~D~ViHlAa~~~-~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~g---v~~ 184 (442)
T PLN02572 114 EIELYVGDICDFEFLSEAFKSF-----EPDAVVHFGEQRS-APYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFA---PDC 184 (442)
T ss_pred cceEEECCCCCHHHHHHHHHhC-----CCCEEEECCCccc-ChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhC---CCc
Confidence 5889999999999998888863 6999999997633 233344556678889999999999999876532 124
Q ss_pred eEEEEcCCccccCCCCcccccccc------cc---cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcccc
Q 022369 201 RIINVNSVMHYVGFVDTEDMNVVS------GR---RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271 (298)
Q Consensus 201 ~Iv~isS~~~~~~~~~~~~~~~~~------~~---~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T 271 (298)
++|++||.+.+.......+.+.+. .. .+..+...|+.||.+.+.+.+..+..+ |+++..+.|+.|..
T Consensus 185 ~~V~~SS~~vYG~~~~~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~----gl~~v~lR~~~vyG 260 (442)
T PLN02572 185 HLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQGVVYG 260 (442)
T ss_pred cEEEEecceecCCCCCCCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhc----CCCEEEEecccccC
Confidence 899999986553211000000000 00 122345679999999888887766554 79999999999988
Q ss_pred Cc
Q 022369 272 NV 273 (298)
Q Consensus 272 ~~ 273 (298)
|.
T Consensus 261 p~ 262 (442)
T PLN02572 261 VR 262 (442)
T ss_pred CC
Confidence 75
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.9e-17 Score=148.13 Aligned_cols=183 Identities=16% Similarity=0.092 Sum_probs=133.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH-HHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL-IQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++|+++||||+|.||.+++++|+++|++|++++|+.++.... ...+.. ...++.++.+|++|.+++.++++
T Consensus 7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~d~~~~~~~~~ 80 (342)
T PLN02214 7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEG------GKERLILCKADLQDYEALKAAID 80 (342)
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhC------CCCcEEEEecCcCChHHHHHHHh
Confidence 35678999999999999999999999999999999987653321 112211 01257889999999998887765
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
.+|++||+|+... ++.++.+++|+.|+.++++++... +.++||++||..+..+.......
T Consensus 81 -------~~d~Vih~A~~~~---------~~~~~~~~~nv~gt~~ll~aa~~~----~v~r~V~~SS~~avyg~~~~~~~ 140 (342)
T PLN02214 81 -------GCDGVFHTASPVT---------DDPEQMVEPAVNGAKFVINAAAEA----KVKRVVITSSIGAVYMDPNRDPE 140 (342)
T ss_pred -------cCCEEEEecCCCC---------CCHHHHHHHHHHHHHHHHHHHHhc----CCCEEEEeccceeeeccCCCCCC
Confidence 4899999998631 246788999999999999987642 34599999997655432110000
Q ss_pred cccccc------cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 221 NVVSGR------RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 221 ~~~~~~------~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
..++.. .+......|+.||.+.+.+++.++.+. |+++..+.|+.|..|..
T Consensus 141 ~~~~E~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~----g~~~v~lRp~~vyGp~~ 196 (342)
T PLN02214 141 AVVDESCWSDLDFCKNTKNWYCYGKMVAEQAAWETAKEK----GVDLVVLNPVLVLGPPL 196 (342)
T ss_pred cccCcccCCChhhccccccHHHHHHHHHHHHHHHHHHHc----CCcEEEEeCCceECCCC
Confidence 001111 011234579999999999988877665 79999999999988854
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-17 Score=149.22 Aligned_cols=187 Identities=14% Similarity=0.111 Sum_probs=131.6
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEE-EEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVV-MAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vi-l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
|.+|||||+|+||.+++++|+++|++++ +++|..+. ... ..+..... ..++.++.+|++|.+++++++++
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~-~~~-~~~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~--- 72 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYA-GNL-MSLAPVAQ----SERFAFEKVDICDRAELARVFTE--- 72 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccc-cch-hhhhhccc----CCceEEEECCCcChHHHHHHHhh---
Confidence 5799999999999999999999998755 45554321 111 11111000 12577889999999999888775
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhh---c--CCCCeEEEEcCCccccCCCCccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLI---R--GSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~---~--~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
.++|++||+||.... ..+.++++..+++|+.|+.++++++.+.|. + .+..++|++||.+-+...... +
T Consensus 73 --~~~D~Vih~A~~~~~----~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~-~ 145 (355)
T PRK10217 73 --HQPDCVMHLAAESHV----DRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHST-D 145 (355)
T ss_pred --cCCCEEEECCcccCc----chhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCC-C
Confidence 269999999997532 234467789999999999999999987642 1 123489999997543211000 0
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
.......+..+...|+.||.+.+.+++.++.++ ++++..+.|+.+..|-
T Consensus 146 -~~~~E~~~~~p~s~Y~~sK~~~e~~~~~~~~~~----~~~~~i~r~~~v~Gp~ 194 (355)
T PRK10217 146 -DFFTETTPYAPSSPYSASKASSDHLVRAWLRTY----GLPTLITNCSNNYGPY 194 (355)
T ss_pred -CCcCCCCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCeEEEeeeeeeCCC
Confidence 011223344456789999999999999988776 6788888888887765
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.2e-17 Score=147.90 Aligned_cols=189 Identities=19% Similarity=0.086 Sum_probs=133.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
..|++|||||+|.||.+++++|+++|++|++++|+.+..+........ . +...++.++.+|++|.+.+.++++
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~--~--~~~~~~~~v~~Dl~d~~~~~~~~~--- 76 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDL--P--GATTRLTLWKADLAVEGSFDDAIR--- 76 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhc--c--CCCCceEEEEecCCChhhHHHHHh---
Confidence 357899999999999999999999999999999987666554322211 0 111257889999999998877765
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC-cc--cc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD-TE--DM 220 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~-~~--~~ 220 (298)
.+|++||+|+.... . ..+..+..+++|+.|+.++++++.+... .++||++||...+.+... .+ +.
T Consensus 77 ----~~d~ViH~A~~~~~---~--~~~~~~~~~~~Nv~gt~~ll~aa~~~~~---~~r~v~~SS~~~~~~~~~~~~~~~E 144 (351)
T PLN02650 77 ----GCTGVFHVATPMDF---E--SKDPENEVIKPTVNGMLSIMKACAKAKT---VRRIVFTSSAGTVNVEEHQKPVYDE 144 (351)
T ss_pred ----CCCEEEEeCCCCCC---C--CCCchhhhhhHHHHHHHHHHHHHHhcCC---ceEEEEecchhhcccCCCCCCccCc
Confidence 48999999986421 1 1123467889999999999999876531 359999999855433111 00 00
Q ss_pred c---cccc-ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 221 N---VVSG-RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ~---~~~~-~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
. .... .........|+.||.+.+.+++.++.++ |+++..+.|+.|.+|...
T Consensus 145 ~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~Gp~~~ 199 (351)
T PLN02650 145 DCWSDLDFCRRKKMTGWMYFVSKTLAEKAAWKYAAEN----GLDFISIIPTLVVGPFIS 199 (351)
T ss_pred ccCCchhhhhccccccchHHHHHHHHHHHHHHHHHHc----CCeEEEECCCceECCCCC
Confidence 0 0000 0011123579999999999998887765 799999999999998643
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-16 Score=144.30 Aligned_cols=186 Identities=16% Similarity=0.092 Sum_probs=130.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.+.+|+++||||+++||.+++++|+++|++|++++|.........+.+...... .+.++.++.+|++|++++.+++++
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~l~~~~~~ 79 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGD--LGDNLVFHKVDLRDKEALEKVFAS 79 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcc--cCccceEEecCcCCHHHHHHHHHh
Confidence 466799999999999999999999999999999987643333222222221111 113578899999999999888775
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
. ++|++||+|+..... .+.+++++.+++|+.++.++.+++ .+.+.+++|++||...+... . ..
T Consensus 80 ~-----~~d~vih~a~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~Ss~~vyg~~-~---~~ 142 (352)
T PLN02240 80 T-----RFDAVIHFAGLKAVG----ESVAKPLLYYDNNLVGTINLLEVM----AKHGCKKLVFSSSATVYGQP-E---EV 142 (352)
T ss_pred C-----CCCEEEEccccCCcc----ccccCHHHHHHHHHHHHHHHHHHH----HHcCCCEEEEEccHHHhCCC-C---CC
Confidence 2 799999999975321 233567889999999999998854 33444699999996433211 1 01
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIV 269 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v 269 (298)
.+....+..+...|+.+|.+.+.+.+.++.+. .++++..+.|+.+
T Consensus 143 ~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~~~R~~~v 187 (352)
T PLN02240 143 PCTEEFPLSATNPYGRTKLFIEEICRDIHASD---PEWKIILLRYFNP 187 (352)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhc---CCCCEEEEeecCc
Confidence 12233344556789999999999998887652 2566666665444
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=145.73 Aligned_cols=173 Identities=15% Similarity=0.063 Sum_probs=121.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHH-HHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAAN-ELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
|++|||||+|+||.+++++|+++|++|++++|+.+... ...+.+.+.... ..+..+.++.+|++|.+++.++++..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dl~d~~~l~~~~~~~-- 77 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHN-VNKARMKLHYGDLTDSSNLRRIIDEI-- 77 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhcccc-ccccceeEEEeccCCHHHHHHHHHhC--
Confidence 58999999999999999999999999999999864211 111111110000 00135889999999999998888864
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
++|++||+|+..... .+.+.-+..+++|+.|+.++++++.+.-.+ +..++|++||..-+...... ...
T Consensus 78 ---~~d~ViH~Aa~~~~~----~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~-~~~~~v~~SS~~vyg~~~~~----~~~ 145 (343)
T TIGR01472 78 ---KPTEIYNLAAQSHVK----VSFEIPEYTADVDGIGTLRLLEAVRTLGLI-KSVKFYQASTSELYGKVQEI----PQN 145 (343)
T ss_pred ---CCCEEEECCcccccc----hhhhChHHHHHHHHHHHHHHHHHHHHhCCC-cCeeEEEeccHHhhCCCCCC----CCC
Confidence 589999999975432 122234567789999999999998774221 12389999997544322111 122
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHc
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRL 253 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~ 253 (298)
...+..+...|++||.+.+.+++.++.++
T Consensus 146 E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~ 174 (343)
T TIGR01472 146 ETTPFYPRSPYAAAKLYAHWITVNYREAY 174 (343)
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHh
Confidence 33444566789999999999999988775
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-16 Score=146.33 Aligned_cols=197 Identities=16% Similarity=0.181 Sum_probs=164.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++||+++||||+|.||.++++++++.+. ++++.+|++.++..+..++++..+. .++.++-+|+.|.+.+.+++++
T Consensus 248 ~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~----~~~~~~igdVrD~~~~~~~~~~ 323 (588)
T COG1086 248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPE----LKLRFYIGDVRDRDRVERAMEG 323 (588)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCC----cceEEEecccccHHHHHHHHhc
Confidence 6899999999999999999999999987 8999999999999999999987653 4899999999999999998886
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
. ++|+++|.|..-+. |..+ .+..+.+.+|++|+.++..++...-. .++|++|+--+.
T Consensus 324 ~-----kvd~VfHAAA~KHV-Pl~E---~nP~Eai~tNV~GT~nv~~aa~~~~V----~~~V~iSTDKAV---------- 380 (588)
T COG1086 324 H-----KVDIVFHAAALKHV-PLVE---YNPEEAIKTNVLGTENVAEAAIKNGV----KKFVLISTDKAV---------- 380 (588)
T ss_pred C-----CCceEEEhhhhccC-cchh---cCHHHHHHHhhHhHHHHHHHHHHhCC----CEEEEEecCccc----------
Confidence 4 79999999987553 3333 45677889999999999999877544 499999996443
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHHhhhhcccCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNP 295 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~~~~p 295 (298)
.+...|++||...+.++.+++.+. ...+-++.+|.=|.|-.....-+|-+.+++.+.-|+..-+|
T Consensus 381 --------~PtNvmGaTKr~aE~~~~a~~~~~-~~~~T~f~~VRFGNVlGSrGSViPlFk~QI~~GgplTvTdp 445 (588)
T COG1086 381 --------NPTNVMGATKRLAEKLFQAANRNV-SGTGTRFCVVRFGNVLGSRGSVIPLFKKQIAEGGPLTVTDP 445 (588)
T ss_pred --------CCchHhhHHHHHHHHHHHHHhhcc-CCCCcEEEEEEecceecCCCCCHHHHHHHHHcCCCccccCC
Confidence 334679999999999999999887 44478999999999988888778888888777766643344
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-17 Score=143.59 Aligned_cols=192 Identities=16% Similarity=0.161 Sum_probs=141.6
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 68 CIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
||||||+|.||.+++++|++.+. +|+++||++.++-++..+++...+..+....+..+.+|++|.+.+++++++.
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~---- 76 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEY---- 76 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT------
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhc----
Confidence 69999999999999999999985 8999999999999999998766554332234556789999999998887753
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
++|+++|.|+.-+.. +.+ +...+.+++|++|+.++.+++..+- -.++|+||+--+.
T Consensus 77 -~pdiVfHaAA~KhVp-l~E---~~p~eav~tNv~GT~nv~~aa~~~~----v~~~v~ISTDKAv--------------- 132 (293)
T PF02719_consen 77 -KPDIVFHAAALKHVP-LME---DNPFEAVKTNVLGTQNVAEAAIEHG----VERFVFISTDKAV--------------- 132 (293)
T ss_dssp -T-SEEEE------HH-HHC---CCHHHHHHHHCHHHHHHHHHHHHTT-----SEEEEEEECGCS---------------
T ss_pred -CCCEEEEChhcCCCC-hHH---hCHHHHHHHHHHHHHHHHHHHHHcC----CCEEEEccccccC---------------
Confidence 899999999975432 222 3567789999999999999988753 3499999996432
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHHhhhhc
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYF 291 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~ 291 (298)
.+...|++||...+.+..+.+... .+.+.++.+|.=|.|-..-..-+|-+.+++...-|+.
T Consensus 133 ---~PtnvmGatKrlaE~l~~~~~~~~-~~~~t~f~~VRFGNVlgS~GSVip~F~~Qi~~g~PlT 193 (293)
T PF02719_consen 133 ---NPTNVMGATKRLAEKLVQAANQYS-GNSDTKFSSVRFGNVLGSRGSVIPLFKKQIKNGGPLT 193 (293)
T ss_dssp ---S--SHHHHHHHHHHHHHHHHCCTS-SSS--EEEEEEE-EETTGTTSCHHHHHHHHHTTSSEE
T ss_pred ---CCCcHHHHHHHHHHHHHHHHhhhC-CCCCcEEEEEEecceecCCCcHHHHHHHHHHcCCcce
Confidence 344779999999999999988887 6677999999999998877777788888887776764
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-16 Score=142.64 Aligned_cols=188 Identities=19% Similarity=0.125 Sum_probs=130.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++|++|||||+|.||.+++++|+++|++|++++|+.+...... .+... . +...++.++.+|++|++++.++++
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~-~--~~~~~~~~~~~Dl~~~~~~~~~~~--- 75 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTE-HLLAL-D--GAKERLHLFKANLLEEGSFDSVVD--- 75 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHH-HHHhc-c--CCCCceEEEeccccCcchHHHHHc---
Confidence 4689999999999999999999999999999999876543322 22111 0 111368899999999988777655
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccc-c-CCCCccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY-V-GFVDTEDMN 221 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~-~-~~~~~~~~~ 221 (298)
++|++||+|+..... ..+..+..+++|+.++.++++++...+ +..+||++||.+++ . +....++ .
T Consensus 76 ----~~d~Vih~A~~~~~~-----~~~~~~~~~~~nv~gt~~ll~a~~~~~---~~~~~v~~SS~~~~~y~~~~~~~~-~ 142 (322)
T PLN02662 76 ----GCEGVFHTASPFYHD-----VTDPQAELIDPAVKGTLNVLRSCAKVP---SVKRVVVTSSMAAVAYNGKPLTPD-V 142 (322)
T ss_pred ----CCCEEEEeCCcccCC-----CCChHHHHHHHHHHHHHHHHHHHHhCC---CCCEEEEccCHHHhcCCCcCCCCC-C
Confidence 589999999864211 112235788999999999999876532 33599999997642 1 1110000 0
Q ss_pred ccccccCC-C-----CcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 222 VVSGRRKY-T-----SLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 222 ~~~~~~~~-~-----~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.++...+. | ....|+.+|.+.+.+++.+..+. |+++..+.|+.+.+|...
T Consensus 143 ~~~E~~~~~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lRp~~v~Gp~~~ 198 (322)
T PLN02662 143 VVDETWFSDPAFCEESKLWYVLSKTLAEEAAWKFAKEN----GIDMVTINPAMVIGPLLQ 198 (322)
T ss_pred cCCcccCCChhHhhcccchHHHHHHHHHHHHHHHHHHc----CCcEEEEeCCcccCCCCC
Confidence 11111111 1 12479999999988887776654 799999999999998643
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.2e-16 Score=138.63 Aligned_cols=182 Identities=14% Similarity=0.098 Sum_probs=130.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHH-HHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 67 TCIVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAA-NELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+++||||+|+||.+++++|++.| .+|++++|..... .+..+.+.. ...+.++.+|++|++++.++++..
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~~~- 72 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLED-------NPRYRFVKGDIGDRELVSRLFTEH- 72 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhcc-------CCCcEEEEcCCcCHHHHHHHHhhc-
Confidence 38999999999999999999987 6899887642111 111111111 125778899999999998887753
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
++|++||+|+.... +.+.+..+..+++|+.++..+++++...+. +.++|++||...+...... ...
T Consensus 73 ----~~d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~---~~~~i~~Ss~~v~g~~~~~---~~~ 138 (317)
T TIGR01181 73 ----QPDAVVHFAAESHV----DRSISGPAAFIETNVVGTYTLLEAVRKYWH---EFRFHHISTDEVYGDLEKG---DAF 138 (317)
T ss_pred ----CCCEEEEcccccCc----hhhhhCHHHHHHHHHHHHHHHHHHHHhcCC---CceEEEeeccceeCCCCCC---CCc
Confidence 69999999997532 234456778899999999999988766543 2489999996533321110 011
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
....+..+...|+.+|++.+.+++.++.+. ++++..+.|+.+..+..
T Consensus 139 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~i~R~~~i~G~~~ 185 (317)
T TIGR01181 139 TETTPLAPSSPYSASKAASDHLVRAYHRTY----GLPALITRCSNNYGPYQ 185 (317)
T ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCCeEEEEeccccCCCC
Confidence 122233445679999999999999987775 68999999999887753
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=139.40 Aligned_cols=186 Identities=13% Similarity=0.091 Sum_probs=129.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCE-EEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAH-VVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~-Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+|||||+|+||.+++++|+++|.+ |+.+++.. ...+... .+ .. +.++.++.+|++|.+++++++++
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~-~~---~~----~~~~~~~~~Dl~d~~~~~~~~~~-- 71 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLA-DV---SD----SERYVFEHADICDRAELDRIFAQ-- 71 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHH-hc---cc----CCceEEEEecCCCHHHHHHHHHh--
Confidence 5899999999999999999999986 55455532 1222211 11 11 13577889999999999998876
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-----CCCeEEEEcCCccccCCCCcc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-----SPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-----~~g~Iv~isS~~~~~~~~~~~ 218 (298)
.++|++||+||..... .+.+..++.+++|+.|+.++++++.++|... +..++|++||...+.......
T Consensus 72 ---~~~d~vih~A~~~~~~----~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~ 144 (352)
T PRK10084 72 ---HQPDAVMHLAAESHVD----RSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPD 144 (352)
T ss_pred ---cCCCEEEECCcccCCc----chhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccc
Confidence 2799999999975321 1223457789999999999999998876431 234899999975443211000
Q ss_pred ------cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 219 ------DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 219 ------~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
....+....++.+...|+.||.+.+.+++.++.++ |+++..+.|+.|..|-
T Consensus 145 ~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~vilr~~~v~Gp~ 201 (352)
T PRK10084 145 EVENSEELPLFTETTAYAPSSPYSASKASSDHLVRAWLRTY----GLPTIVTNCSNNYGPY 201 (352)
T ss_pred cccccccCCCccccCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCEEEEeccceeCCC
Confidence 00112233344556789999999999999988776 5677777777777664
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.1e-16 Score=138.72 Aligned_cols=174 Identities=21% Similarity=0.184 Sum_probs=126.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
+++||||+|+||.+++++|+++|++|++++|+.+..... .. ..+.++.+|++|.+++.++++
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~----~~--------~~~~~~~~D~~~~~~l~~~~~------ 63 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNL----EG--------LDVEIVEGDLRDPASLRKAVA------ 63 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccccc----cc--------CCceEEEeeCCCHHHHHHHHh------
Confidence 689999999999999999999999999999987654322 10 257789999999998877664
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
.+|++||+|+... ...++.+..+++|+.++..+++++.. .+.+++|++||...+..........-....
T Consensus 64 -~~d~vi~~a~~~~------~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~ 132 (328)
T TIGR03466 64 -GCRALFHVAADYR------LWAPDPEEMYAANVEGTRNLLRAALE----AGVERVVYTSSVATLGVRGDGTPADETTPS 132 (328)
T ss_pred -CCCEEEEeceecc------cCCCCHHHHHHHHHHHHHHHHHHHHH----hCCCeEEEEechhhcCcCCCCCCcCccCCC
Confidence 5799999998532 12234677899999999999888654 344699999998665431110000000011
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
.+......|+.+|.+.+.+.+.+..+. |+++..+.|+.+..+.
T Consensus 133 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilR~~~~~G~~ 175 (328)
T TIGR03466 133 SLDDMIGHYKRSKFLAEQAALEMAAEK----GLPVVIVNPSTPIGPR 175 (328)
T ss_pred CcccccChHHHHHHHHHHHHHHHHHhc----CCCEEEEeCCccCCCC
Confidence 111224579999999999988876654 7899999999987664
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-15 Score=135.42 Aligned_cols=180 Identities=18% Similarity=0.091 Sum_probs=124.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
++|||||+++||.+++++|+++|++|++++|...........+.+. . +.++.++.+|++|.+++.++++.
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~Dl~d~~~~~~~~~~----- 71 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERL-G----GKHPTFVEGDIRNEALLTEILHD----- 71 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHh-c----CCCceEEEccCCCHHHHHHHHhc-----
Confidence 5899999999999999999999999999987544333332222221 1 12567889999999988887764
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
.++|++||+||...... ..+...+.+++|+.++.++.+++ ++.+.+++|++||...+..... ...+..
T Consensus 72 ~~~d~vvh~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~~v~~Ss~~~yg~~~~----~~~~E~ 139 (338)
T PRK10675 72 HAIDTVIHFAGLKAVGE----SVQKPLEYYDNNVNGTLRLISAM----RAANVKNLIFSSSATVYGDQPK----IPYVES 139 (338)
T ss_pred CCCCEEEECCccccccc----hhhCHHHHHHHHHHHHHHHHHHH----HHcCCCEEEEeccHHhhCCCCC----Cccccc
Confidence 37999999999754321 22345567899999999988754 4445568999999754422110 011122
Q ss_pred cCC-CCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcccc
Q 022369 227 RKY-TSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271 (298)
Q Consensus 227 ~~~-~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T 271 (298)
.+. .+...|+.+|.+.+.+.+.++++. .++++..+.|+.+..
T Consensus 140 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~---~~~~~~ilR~~~v~g 182 (338)
T PRK10675 140 FPTGTPQSPYGKSKLMVEQILTDLQKAQ---PDWSIALLRYFNPVG 182 (338)
T ss_pred cCCCCCCChhHHHHHHHHHHHHHHHHhc---CCCcEEEEEeeeecC
Confidence 222 235789999999999999987664 256666666555443
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3e-15 Score=130.55 Aligned_cols=173 Identities=22% Similarity=0.252 Sum_probs=115.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH-HHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSL-DSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~-~~v~~~~ 139 (298)
...++++++||||+|+||++++++|+++|++|+++.|+.++....... +..+.++.+|+++. +++ .
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~----------~~~~~~~~~Dl~d~~~~l---~ 79 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQ----------DPSLQIVRADVTEGSDKL---V 79 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhccc----------CCceEEEEeeCCCCHHHH---H
Confidence 345678999999999999999999999999999999997765433211 12578899999983 332 2
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+.+. .++|++|+|+|....... ...+++|+.++.++++++ .+++.++||++||...+....
T Consensus 80 ~~~~---~~~d~vi~~~g~~~~~~~--------~~~~~~n~~~~~~ll~a~----~~~~~~~iV~iSS~~v~g~~~---- 140 (251)
T PLN00141 80 EAIG---DDSDAVICATGFRRSFDP--------FAPWKVDNFGTVNLVEAC----RKAGVTRFILVSSILVNGAAM---- 140 (251)
T ss_pred HHhh---cCCCEEEECCCCCcCCCC--------CCceeeehHHHHHHHHHH----HHcCCCEEEEEccccccCCCc----
Confidence 2221 269999999987421110 112468888888888875 445667999999986432110
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHH--cCCCCCcEEEEeeCCccccCcc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKR--LPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e--~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
+.+....|.+.|.+...+...+..| + ...|++++.|.||++.++..
T Consensus 141 --------~~~~~~~~~~~~~~~~~~~~k~~~e~~l-~~~gi~~~iirpg~~~~~~~ 188 (251)
T PLN00141 141 --------GQILNPAYIFLNLFGLTLVAKLQAEKYI-RKSGINYTIVRPGGLTNDPP 188 (251)
T ss_pred --------ccccCcchhHHHHHHHHHHHHHHHHHHH-HhcCCcEEEEECCCccCCCC
Confidence 0122234666665444433333333 4 45689999999999977653
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-15 Score=133.71 Aligned_cols=180 Identities=22% Similarity=0.196 Sum_probs=128.4
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
++|||||+|+||.+++++|+++|++|++++|......+....+.. . ..+..+.+|+++.+++.++++.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~D~~~~~~~~~~~~~----- 68 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGER----I---TRVTFVEGDLRDRELLDRLFEE----- 68 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhcc----c---cceEEEECCCCCHHHHHHHHHh-----
Confidence 379999999999999999999999999887654332222222111 0 1577889999999999888774
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
+++|++|||||.....+ +.++..+.++.|+.++..+++++. +.+.+++|++||...+... .. ......
T Consensus 69 ~~~d~vv~~ag~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~~v~~ss~~~~g~~-~~---~~~~e~ 136 (328)
T TIGR01179 69 HKIDAVIHFAGLIAVGE----SVQDPLKYYRNNVVNTLNLLEAMQ----QTGVKKFIFSSSAAVYGEP-SS---IPISED 136 (328)
T ss_pred CCCcEEEECccccCcch----hhcCchhhhhhhHHHHHHHHHHHH----hcCCCEEEEecchhhcCCC-CC---CCcccc
Confidence 47999999999753221 233456778899999999988753 3345699999987544221 10 011222
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
.+..+...|+.+|++.+.+.+.++.+. .++++..+.|+.+..+-
T Consensus 137 ~~~~~~~~y~~sK~~~e~~~~~~~~~~---~~~~~~ilR~~~v~g~~ 180 (328)
T TIGR01179 137 SPLGPINPYGRSKLMSERILRDLSKAD---PGLSYVILRYFNVAGAD 180 (328)
T ss_pred CCCCCCCchHHHHHHHHHHHHHHHHhc---cCCCEEEEecCcccCCC
Confidence 233455789999999999999987763 37899999998887763
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-15 Score=129.03 Aligned_cols=179 Identities=17% Similarity=0.151 Sum_probs=137.3
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEc-----CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA--HVVMAVR-----NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+.+|||||++.||..+++.+.++.- +|+.+|. |.+.+..+ .. ..+..+++.|+.|.+.+.++
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~----~~-------~~~~~fv~~DI~D~~~v~~~ 69 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADV----ED-------SPRYRFVQGDICDRELVDRL 69 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhh----hc-------CCCceEEeccccCHHHHHHH
Confidence 3689999999999999999998864 5777765 33333222 11 14899999999999999888
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++- ++|++||-|.=++. +-+.++-+..+++|+.|++.|..++..+..+ -+++.||.-.-+.....
T Consensus 70 ~~~~-----~~D~VvhfAAESHV----DRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~---frf~HISTDEVYG~l~~-- 135 (340)
T COG1088 70 FKEY-----QPDAVVHFAAESHV----DRSIDGPAPFIQTNVVGTYTLLEAARKYWGK---FRFHHISTDEVYGDLGL-- 135 (340)
T ss_pred HHhc-----CCCeEEEechhccc----cccccChhhhhhcchHHHHHHHHHHHHhccc---ceEEEeccccccccccC--
Confidence 8863 79999999987653 3466777888999999999999999877643 58999998654332211
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
+....+...++.+.++|+||||+...|++++.+-+ |+.++...+.--..|.
T Consensus 136 ~~~~FtE~tp~~PsSPYSASKAasD~lVray~~TY----glp~~ItrcSNNYGPy 186 (340)
T COG1088 136 DDDAFTETTPYNPSSPYSASKAASDLLVRAYVRTY----GLPATITRCSNNYGPY 186 (340)
T ss_pred CCCCcccCCCCCCCCCcchhhhhHHHHHHHHHHHc----CCceEEecCCCCcCCC
Confidence 11134567788999999999999999999998887 7888877766655554
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.6e-15 Score=134.46 Aligned_cols=188 Identities=12% Similarity=0.012 Sum_probs=131.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.+++|++|||||+|-||.+++++|+++|.+|++++|................... ...++.++.+|+.|.+++.++++
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Di~d~~~l~~~~~- 89 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEE-QWSRFIFIQGDIRKFTDCQKACK- 89 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccc-cCCceEEEEccCCCHHHHHHHhh-
Confidence 4566899999999999999999999999999999986544333222222111110 01257889999999887776654
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
.+|++||.|+..... .+.++.+..+++|+.|+.++.+++.. .+-.++|++||...+....+.+.
T Consensus 90 ------~~d~ViHlAa~~~~~----~~~~~~~~~~~~Nv~gt~nll~~~~~----~~~~~~v~~SS~~vyg~~~~~~~-- 153 (348)
T PRK15181 90 ------NVDYVLHQAALGSVP----RSLKDPIATNSANIDGFLNMLTAARD----AHVSSFTYAASSSTYGDHPDLPK-- 153 (348)
T ss_pred ------CCCEEEECccccCch----hhhhCHHHHHHHHHHHHHHHHHHHHH----cCCCeEEEeechHhhCCCCCCCC--
Confidence 489999999975321 12234456799999999999987643 33459999999754432211111
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
....+..+...|+.||.+.+.+.+..+.+. |+++..+.|+.+..|-
T Consensus 154 --~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lR~~~vyGp~ 199 (348)
T PRK15181 154 --IEERIGRPLSPYAVTKYVNELYADVFARSY----EFNAIGLRYFNVFGRR 199 (348)
T ss_pred --CCCCCCCCCChhhHHHHHHHHHHHHHHHHh----CCCEEEEEecceeCcC
Confidence 111122344679999999998887765554 7999999999998875
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.8e-15 Score=132.30 Aligned_cols=188 Identities=18% Similarity=0.150 Sum_probs=135.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+++|.||||+|-||..++++|+++|+.|..+.|++++-+.. +.+.+.- +.+.+.+.+..|+.|++++++.++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~-~~L~~l~---~a~~~l~l~~aDL~d~~sf~~ai~--- 77 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKT-EHLRKLE---GAKERLKLFKADLLDEGSFDKAID--- 77 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhH-HHHHhcc---cCcccceEEeccccccchHHHHHh---
Confidence 578999999999999999999999999999999999884432 2333221 122469999999999999999887
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHH-HHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC-CCccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYE-EHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF-VDTEDMN 221 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~-~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~-~~~~~~~ 221 (298)
..|.++|.|....... ++.+ +.++.++.|+.++.+++...= .-.|||++||.++..+. ....+-.
T Consensus 78 ----gcdgVfH~Asp~~~~~------~~~e~~li~pav~Gt~nVL~ac~~~~---sVkrvV~TSS~aAv~~~~~~~~~~~ 144 (327)
T KOG1502|consen 78 ----GCDGVFHTASPVDFDL------EDPEKELIDPAVKGTKNVLEACKKTK---SVKRVVYTSSTAAVRYNGPNIGENS 144 (327)
T ss_pred ----CCCEEEEeCccCCCCC------CCcHHhhhhHHHHHHHHHHHHHhccC---CcceEEEeccHHHhccCCcCCCCCc
Confidence 4899999998643221 1144 689999999999999986643 23599999999988765 2211111
Q ss_pred ccccccCC-------CCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 222 VVSGRRKY-------TSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 222 ~~~~~~~~-------~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
..+ +..+ .....|+.||...+ .-|.|+..+.|+.+.+|+|+.|-.|....
T Consensus 145 vvd-E~~wsd~~~~~~~~~~Y~~sK~lAE----kaAw~fa~e~~~~lv~inP~lV~GP~l~~ 201 (327)
T KOG1502|consen 145 VVD-EESWSDLDFCRCKKLWYALSKTLAE----KAAWEFAKENGLDLVTINPGLVFGPGLQP 201 (327)
T ss_pred ccc-cccCCcHHHHHhhHHHHHHHHHHHH----HHHHHHHHhCCccEEEecCCceECCCccc
Confidence 111 1111 11145888885444 44444433448999999999999998776
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.8e-15 Score=134.90 Aligned_cols=195 Identities=14% Similarity=0.066 Sum_probs=129.5
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+.++|++|||||+++||.+++++|+++|++|+++.|+.+..+.+ +++............+.++.+|++|.+++.++++
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l-~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~ 127 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL-REMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD 127 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence 356789999999999999999999999999999999987665544 2222110000001257889999999999888776
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcc-ccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMH-YVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~-~~~~~~~~~ 219 (298)
. +|.++|.|+......... ..+...++|+.++.++.+++... .+-.++|++||..+ ..+.....+
T Consensus 128 ~-------~d~V~hlA~~~~~~~~~~----~~~~~~~~nv~gt~~llea~~~~---~~v~r~V~~SS~~~~vyg~~~~~~ 193 (367)
T PLN02686 128 G-------CAGVFHTSAFVDPAGLSG----YTKSMAELEAKASENVIEACVRT---ESVRKCVFTSSLLACVWRQNYPHD 193 (367)
T ss_pred h-------ccEEEecCeeeccccccc----ccchhhhhhHHHHHHHHHHHHhc---CCccEEEEeccHHHhcccccCCCC
Confidence 3 578888887643221111 11244567888888888876432 12348999999642 211100000
Q ss_pred c-ccccc------ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 220 M-NVVSG------RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 220 ~-~~~~~------~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
. ..++. ..+..+...|+.||.+.+.+++.++.+. |++++++.|+.|.+|..
T Consensus 194 ~~~~i~E~~~~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----gl~~v~lRp~~vyGp~~ 251 (367)
T PLN02686 194 LPPVIDEESWSDESFCRDNKLWYALGKLKAEKAAWRAARGK----GLKLATICPALVTGPGF 251 (367)
T ss_pred CCcccCCCCCCChhhcccccchHHHHHHHHHHHHHHHHHhc----CceEEEEcCCceECCCC
Confidence 0 00000 1122234569999999999998876654 89999999999999963
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.4e-15 Score=129.31 Aligned_cols=184 Identities=18% Similarity=0.103 Sum_probs=130.8
Q ss_pred EEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 69 IVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 69 lITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
|||||+|-||.+++++|+++| .+|.+.++++...... .+... ....++.+|++|++++.++++
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~--~~~~~-------~~~~~~~~Di~d~~~l~~a~~------ 65 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLK--DLQKS-------GVKEYIQGDITDPESLEEALE------ 65 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccch--hhhcc-------cceeEEEeccccHHHHHHHhc------
Confidence 699999999999999999999 7898888876542211 11110 123389999999999988876
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
..|++||+|+...... ....++.+++|+.|+-++++++... +-.++|++||...+.......++...+..
T Consensus 66 -g~d~V~H~Aa~~~~~~-----~~~~~~~~~vNV~GT~nvl~aa~~~----~VkrlVytSS~~vv~~~~~~~~~~~~dE~ 135 (280)
T PF01073_consen 66 -GVDVVFHTAAPVPPWG-----DYPPEEYYKVNVDGTRNVLEAARKA----GVKRLVYTSSISVVFDNYKGDPIINGDED 135 (280)
T ss_pred -CCceEEEeCccccccC-----cccHHHHHHHHHHHHHHHHHHHHHc----CCCEEEEEcCcceeEeccCCCCcccCCcC
Confidence 5799999999754221 3557889999999999999988653 45699999999877653222222212222
Q ss_pred cCCC--CcccchhhHHHHHHHHHHHHH-HcCCCCCcEEEEeeCCccccCccCCc
Q 022369 227 RKYT--SLMGYSGSKLAQIKFSSILQK-RLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 227 ~~~~--~~~~Y~asKaa~~~l~~~l~~-e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
.+++ ....|+.||+..+.+...... +++...+++..+|.|..|..|--..+
T Consensus 136 ~~~~~~~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~~ 189 (280)
T PF01073_consen 136 TPYPSSPLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQRL 189 (280)
T ss_pred CcccccccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCcccccc
Confidence 2323 456799999988887766543 23222358888999999988865443
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.8e-14 Score=120.81 Aligned_cols=160 Identities=19% Similarity=0.165 Sum_probs=125.3
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
+++|||||++-||.+.+.+|++.|+.|+++|.-...-.+.+... ...+++.|+.|.+.+++++++.
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~-----------~~~f~~gDi~D~~~L~~vf~~~--- 66 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL-----------QFKFYEGDLLDRALLTAVFEEN--- 66 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc-----------cCceEEeccccHHHHHHHHHhc---
Confidence 36999999999999999999999999999998655544443331 2579999999999999988874
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
+||.+||.||....+ .|.+.-.+.++.|+.|+..|+++ |++.+-.+|||-||.+ ..|.+. ...+.+
T Consensus 67 --~idaViHFAa~~~Vg----ESv~~Pl~Yy~NNv~gTl~Ll~a----m~~~gv~~~vFSStAa-vYG~p~---~~PI~E 132 (329)
T COG1087 67 --KIDAVVHFAASISVG----ESVQNPLKYYDNNVVGTLNLIEA----MLQTGVKKFIFSSTAA-VYGEPT---TSPISE 132 (329)
T ss_pred --CCCEEEECccccccc----hhhhCHHHHHhhchHhHHHHHHH----HHHhCCCEEEEecchh-hcCCCC---CcccCC
Confidence 899999999976543 36677888999999999999886 4555556888877764 444322 233445
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHc
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRL 253 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~ 253 (298)
..+..+..+|+.||..++.+.+.++.-.
T Consensus 133 ~~~~~p~NPYG~sKlm~E~iL~d~~~a~ 160 (329)
T COG1087 133 TSPLAPINPYGRSKLMSEEILRDAAKAN 160 (329)
T ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5566677889999999999988887765
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-13 Score=124.76 Aligned_cols=183 Identities=19% Similarity=0.178 Sum_probs=119.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHH---HHHHHHHHHhhcCC-CCC-ccEEEEEcCCCCHH------
Q 022369 67 TCIVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAA---NELIQKWQEEWSGK-GLP-LNIEAMELDLLSLD------ 133 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~---~~~~~~~~~~~~~~-~~~-~~~~~~~~D~s~~~------ 133 (298)
+++||||+|+||.+++++|+++| ++|+++.|+.+.. +.+.+.+....... ... .++.++.+|++++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 48999999999999999999999 7899999986532 22222222111000 000 36899999998753
Q ss_pred HHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccC
Q 022369 134 SVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213 (298)
Q Consensus 134 ~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~ 213 (298)
...++. ..+|++||||+..... ..++...++|+.++..+++.+.. .+..++|++||...+..
T Consensus 81 ~~~~~~-------~~~d~vih~a~~~~~~-------~~~~~~~~~nv~g~~~ll~~a~~----~~~~~~v~iSS~~v~~~ 142 (367)
T TIGR01746 81 EWERLA-------ENVDTIVHNGALVNWV-------YPYSELRAANVLGTREVLRLAAS----GRAKPLHYVSTISVLAA 142 (367)
T ss_pred HHHHHH-------hhCCEEEeCCcEeccC-------CcHHHHhhhhhHHHHHHHHHHhh----CCCceEEEEccccccCC
Confidence 222221 3699999999975311 23567788999999999887654 23346999999876543
Q ss_pred CCCcc-cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 214 FVDTE-DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 214 ~~~~~-~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
....+ ................|+.+|++.+.+.+..+. .|++++.+.||.+.++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~g~~~~i~Rpg~v~G~ 197 (367)
T TIGR01746 143 IDLSTVTEDDAIVTPPPGLAGGYAQSKWVAELLVREASD-----RGLPVTIVRPGRILGN 197 (367)
T ss_pred cCCCCccccccccccccccCCChHHHHHHHHHHHHHHHh-----cCCCEEEECCCceeec
Confidence 21100 000000000112245799999999888765432 3899999999999876
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-13 Score=115.98 Aligned_cols=174 Identities=24% Similarity=0.212 Sum_probs=132.2
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccC
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLG 147 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g 147 (298)
||||||+|-||.+++++|.++|..|+.+.|+.......... .++.++.+|+.|.+.++++++..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~-----------~~~~~~~~dl~~~~~~~~~~~~~----- 64 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK-----------LNVEFVIGDLTDKEQLEKLLEKA----- 64 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH-----------TTEEEEESETTSHHHHHHHHHHH-----
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc-----------ceEEEEEeecccccccccccccc-----
Confidence 69999999999999999999999999888876654433222 16889999999999999999886
Q ss_pred CccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccccc
Q 022369 148 PLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRR 227 (298)
Q Consensus 148 ~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~ 227 (298)
++|.+||+|+... ...+.+.....++.|+.++..+.+++.. .+..++|++||...+...... ..+...
T Consensus 65 ~~d~vi~~a~~~~----~~~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~i~~sS~~~y~~~~~~----~~~e~~ 132 (236)
T PF01370_consen 65 NIDVVIHLAAFSS----NPESFEDPEEIIEANVQGTRNLLEAARE----AGVKRFIFLSSASVYGDPDGE----PIDEDS 132 (236)
T ss_dssp TESEEEEEBSSSS----HHHHHHSHHHHHHHHHHHHHHHHHHHHH----HTTSEEEEEEEGGGGTSSSSS----SBETTS
T ss_pred CceEEEEeecccc----cccccccccccccccccccccccccccc----ccccccccccccccccccccc----cccccc
Confidence 7999999999743 1123356778888898888887777654 344699999995433322111 112233
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 228 KYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 228 ~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
+..+...|+.+|...+.+.+.+..+. ++++..+.|+.+..+.
T Consensus 133 ~~~~~~~Y~~~K~~~e~~~~~~~~~~----~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 133 PINPLSPYGASKRAAEELLRDYAKKY----GLRVTILRPPNVYGPG 174 (236)
T ss_dssp GCCHSSHHHHHHHHHHHHHHHHHHHH----TSEEEEEEESEEESTT
T ss_pred cccccccccccccccccccccccccc----cccccccccccccccc
Confidence 33455669999999999999887775 7999999999998888
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-13 Score=126.78 Aligned_cols=188 Identities=13% Similarity=0.100 Sum_probs=124.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
++++.++||||||+|.||.+++++|+++ |++|++++|+.++...+..... .....++.++.+|++|.+.+.+++
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~-----~~~~~~~~~~~~Dl~d~~~l~~~~ 84 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDT-----VPWSGRIQFHRINIKHDSRLEGLI 84 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhcccc-----ccCCCCeEEEEcCCCChHHHHHHh
Confidence 4455678999999999999999999998 5899999998665443321100 001126889999999999887766
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc--
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT-- 217 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~-- 217 (298)
+ .+|++||+|+........ ++-.+.+..|+.++.++.+++.. .+ .++|++||...+......
T Consensus 85 ~-------~~d~ViHlAa~~~~~~~~----~~~~~~~~~n~~gt~~ll~aa~~----~~-~r~v~~SS~~vYg~~~~~~~ 148 (386)
T PLN02427 85 K-------MADLTINLAAICTPADYN----TRPLDTIYSNFIDALPVVKYCSE----NN-KRLIHFSTCEVYGKTIGSFL 148 (386)
T ss_pred h-------cCCEEEEcccccChhhhh----hChHHHHHHHHHHHHHHHHHHHh----cC-CEEEEEeeeeeeCCCcCCCC
Confidence 4 379999999975422111 12234456799999988887643 23 589999997644321110
Q ss_pred -ccccc--------cccc-cCC------CCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 218 -EDMNV--------VSGR-RKY------TSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 218 -~~~~~--------~~~~-~~~------~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
++... .... .+. .....|+.||.+.+.+...++.. .|+++..+.|+.|..+.
T Consensus 149 ~e~~p~~~~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~g~~~~ilR~~~vyGp~ 216 (386)
T PLN02427 149 PKDHPLRQDPAFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAE----NGLEFTIVRPFNWIGPR 216 (386)
T ss_pred CcccccccccccccccccccccccCCCCccccchHHHHHHHHHHHHHHHhh----cCCceEEecccceeCCC
Confidence 00000 0000 000 12346999999998888765443 47999999999998875
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-13 Score=124.40 Aligned_cols=172 Identities=18% Similarity=0.182 Sum_probs=116.2
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc--c
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG--R 145 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~--~ 145 (298)
+|||||+|.||.+++++|+++|++++++.|+.+..... . ....+|+.|..+.+.+++.+.+ .
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~~-~---------------~~~~~~~~d~~~~~~~~~~~~~~~~ 65 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF-V---------------NLVDLDIADYMDKEDFLAQIMAGDD 65 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchHH-H---------------hhhhhhhhhhhhHHHHHHHHhcccc
Confidence 79999999999999999999999777666654332111 0 1124577776666666665542 3
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
++++|++||+|+..... +.+ -+..++.|+.++.++.+++.. .+ .++|++||...+..... .....
T Consensus 66 ~~~~d~Vih~A~~~~~~---~~~---~~~~~~~n~~~t~~ll~~~~~----~~-~~~i~~SS~~vyg~~~~----~~~~E 130 (308)
T PRK11150 66 FGDIEAIFHEGACSSTT---EWD---GKYMMDNNYQYSKELLHYCLE----RE-IPFLYASSAATYGGRTD----DFIEE 130 (308)
T ss_pred cCCccEEEECceecCCc---CCC---hHHHHHHHHHHHHHHHHHHHH----cC-CcEEEEcchHHhCcCCC----CCCcc
Confidence 46899999999864321 111 235689999999999888643 33 47999999865432211 01112
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
..+..+...|+.||.+.+.+.+.+..+. ++++..+.|+.+..+-.
T Consensus 131 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lR~~~vyG~~~ 175 (308)
T PRK11150 131 REYEKPLNVYGYSKFLFDEYVRQILPEA----NSQICGFRYFNVYGPRE 175 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHc----CCCEEEEeeeeecCCCC
Confidence 2233445679999999998887765543 68899999988877653
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.9e-13 Score=131.67 Aligned_cols=186 Identities=16% Similarity=0.096 Sum_probs=127.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHc--CCEEEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAES--GAHVVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~--G~~Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
.++|++|||||+|.||.+++++|+++ |++|+.++|.. +....+. ... ...++.++.+|++|.+.+.++
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~----~~~----~~~~v~~~~~Dl~d~~~~~~~ 75 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLN----PSK----SSPNFKFVKGDIASADLVNYL 75 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhh----hcc----cCCCeEEEECCCCChHHHHHH
Confidence 45689999999999999999999988 67899888753 2222211 100 013688999999999887665
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+.. .++|++||+|+..... .+.++..+.+++|+.++..+.+++... ....++|++||...+......+
T Consensus 76 ~~~-----~~~D~ViHlAa~~~~~----~~~~~~~~~~~~Nv~gt~~ll~a~~~~---~~vkr~I~~SS~~vyg~~~~~~ 143 (668)
T PLN02260 76 LIT-----EGIDTIMHFAAQTHVD----NSFGNSFEFTKNNIYGTHVLLEACKVT---GQIRRFIHVSTDEVYGETDEDA 143 (668)
T ss_pred Hhh-----cCCCEEEECCCccCch----hhhhCHHHHHHHHHHHHHHHHHHHHhc---CCCcEEEEEcchHHhCCCcccc
Confidence 433 3799999999975421 122234567889999999998876431 1245999999975443221110
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
... .....+..+...|+.+|.+.+.+.+.+..++ ++++..+.|+.|..+-
T Consensus 144 ~~~-~~E~~~~~p~~~Y~~sK~~aE~~v~~~~~~~----~l~~vilR~~~VyGp~ 193 (668)
T PLN02260 144 DVG-NHEASQLLPTNPYSATKAGAEMLVMAYGRSY----GLPVITTRGNNVYGPN 193 (668)
T ss_pred ccC-ccccCCCCCCCCcHHHHHHHHHHHHHHHHHc----CCCEEEECcccccCcC
Confidence 000 0111222345679999999999998876664 6889999999988765
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.1e-13 Score=122.50 Aligned_cols=179 Identities=16% Similarity=0.108 Sum_probs=123.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+++.+|||||+|.||.++++.|.++|++|+.++|...... .. . .....++.+|+++.+.+.++++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~------~~----~--~~~~~~~~~Dl~d~~~~~~~~~--- 84 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHM------SE----D--MFCHEFHLVDLRVMENCLKVTK--- 84 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccc------cc----c--cccceEEECCCCCHHHHHHHHh---
Confidence 5689999999999999999999999999999998643210 00 0 0124678899999887766543
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc-cccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE-DMNV 222 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~-~~~~ 222 (298)
++|++||.|+........ ..+....+..|+.++.++.+++. +.+-.++|++||...+......+ +..
T Consensus 85 ----~~D~Vih~Aa~~~~~~~~---~~~~~~~~~~N~~~t~nll~aa~----~~~vk~~V~~SS~~vYg~~~~~~~~~~- 152 (370)
T PLN02695 85 ----GVDHVFNLAADMGGMGFI---QSNHSVIMYNNTMISFNMLEAAR----INGVKRFFYASSACIYPEFKQLETNVS- 152 (370)
T ss_pred ----CCCEEEEcccccCCcccc---ccCchhhHHHHHHHHHHHHHHHH----HhCCCEEEEeCchhhcCCccccCcCCC-
Confidence 589999999864321111 11234456789999988888764 33445999999975443211100 000
Q ss_pred cccc--cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 223 VSGR--RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 223 ~~~~--~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
.... .+..+...|+.+|.+.+.+.+..+... |+++..+.|+.+..|-
T Consensus 153 ~~E~~~~p~~p~s~Yg~sK~~~E~~~~~~~~~~----g~~~~ilR~~~vyGp~ 201 (370)
T PLN02695 153 LKESDAWPAEPQDAYGLEKLATEELCKHYTKDF----GIECRIGRFHNIYGPF 201 (370)
T ss_pred cCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEEECCccCCC
Confidence 1111 133456789999999999888876554 7999999999998874
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.1e-13 Score=123.77 Aligned_cols=165 Identities=17% Similarity=0.157 Sum_probs=116.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH--HHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL--IQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..++++++||||+|+||.+++++|+++|++|++++|+..+.+.. .++..... ..+.++.+|++|++++.+++
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~------~~v~~v~~Dl~d~~~l~~~~ 130 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKEL------PGAEVVFGDVTDADSLRKVL 130 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhc------CCceEEEeeCCCHHHHHHHH
Confidence 34678999999999999999999999999999999987654321 11111111 25788999999999999888
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+... +++|++|||+|..... ..+.+++|+.++.++.+++ ++.+-+++|++||.....
T Consensus 131 ~~~~---~~~D~Vi~~aa~~~~~---------~~~~~~vn~~~~~~ll~aa----~~~gv~r~V~iSS~~v~~------- 187 (390)
T PLN02657 131 FSEG---DPVDVVVSCLASRTGG---------VKDSWKIDYQATKNSLDAG----REVGAKHFVLLSAICVQK------- 187 (390)
T ss_pred HHhC---CCCcEEEECCccCCCC---------CccchhhHHHHHHHHHHHH----HHcCCCEEEEEeeccccC-------
Confidence 7541 2699999999853211 1123567888877777765 344557999999975321
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
+...|..+|...+...+. ...+++...+.|+.+..+
T Consensus 188 -----------p~~~~~~sK~~~E~~l~~------~~~gl~~tIlRp~~~~~~ 223 (390)
T PLN02657 188 -----------PLLEFQRAKLKFEAELQA------LDSDFTYSIVRPTAFFKS 223 (390)
T ss_pred -----------cchHHHHHHHHHHHHHHh------ccCCCCEEEEccHHHhcc
Confidence 223477788777654432 135899999999877543
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.1e-13 Score=120.94 Aligned_cols=173 Identities=11% Similarity=0.017 Sum_probs=119.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCC-CHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLL-SLDSVVRFSEAWN 143 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s-~~~~v~~~~~~~~ 143 (298)
+++|||||+|-||.+++++|+++ |++|+.++|+.++..... .. ..+.++.+|+. +.+.+.++++
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~-------~~----~~~~~~~~Dl~~~~~~~~~~~~--- 67 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLV-------NH----PRMHFFEGDITINKEWIEYHVK--- 67 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhc-------cC----CCeEEEeCCCCCCHHHHHHHHc---
Confidence 46999999999999999999986 699999998765433221 11 25888999998 6665554433
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
++|++||+|+...... ..++-+..+++|+.++.++..++.. .+ .++|++||...+...... ..
T Consensus 68 ----~~d~ViH~aa~~~~~~----~~~~p~~~~~~n~~~~~~ll~aa~~----~~-~~~v~~SS~~vyg~~~~~----~~ 130 (347)
T PRK11908 68 ----KCDVILPLVAIATPAT----YVKQPLRVFELDFEANLPIVRSAVK----YG-KHLVFPSTSEVYGMCPDE----EF 130 (347)
T ss_pred ----CCCEEEECcccCChHH----hhcCcHHHHHHHHHHHHHHHHHHHh----cC-CeEEEEecceeeccCCCc----Cc
Confidence 5899999999754211 1234456789999999988887643 23 599999998544322110 00
Q ss_pred cccc------C-CCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 224 SGRR------K-YTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 224 ~~~~------~-~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
.... + ..+...|+.||.+.+...+.++.+. |+++..+.|+.+..|.
T Consensus 131 ~ee~~~~~~~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilR~~~v~Gp~ 183 (347)
T PRK11908 131 DPEASPLVYGPINKPRWIYACSKQLMDRVIWAYGMEE----GLNFTLFRPFNWIGPG 183 (347)
T ss_pred CccccccccCcCCCccchHHHHHHHHHHHHHHHHHHc----CCCeEEEeeeeeeCCC
Confidence 0110 1 1233479999999998888876554 6788888888876664
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-13 Score=116.12 Aligned_cols=169 Identities=15% Similarity=0.098 Sum_probs=127.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+++||||||++-||.+.+.+|.++|+.|+++|.-........+.+++...+ +..+.+++.|+.|.+.+++++++.
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~---~~~v~f~~~Dl~D~~~L~kvF~~~-- 76 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGE---GKSVFFVEGDLNDAEALEKLFSEV-- 76 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCC---CCceEEEEeccCCHHHHHHHHhhc--
Confidence 578999999999999999999999999999986444444444555554332 248999999999999999998875
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
.+|.++|-|+....+. +.+.-.+..+.|+.|++++... |++.+-..+|+.||..-+. .+ ..-.++
T Consensus 77 ---~fd~V~Hfa~~~~vge----S~~~p~~Y~~nNi~gtlnlLe~----~~~~~~~~~V~sssatvYG-~p---~~ip~t 141 (343)
T KOG1371|consen 77 ---KFDAVMHFAALAAVGE----SMENPLSYYHNNIAGTLNLLEV----MKAHNVKALVFSSSATVYG-LP---TKVPIT 141 (343)
T ss_pred ---CCceEEeehhhhccch----hhhCchhheehhhhhHHHHHHH----HHHcCCceEEEecceeeec-Cc---ceeecc
Confidence 5999999999765443 4455578889999999998775 5555566899999865433 22 111122
Q ss_pred cccCCC-CcccchhhHHHHHHHHHHHHHHc
Q 022369 225 GRRKYT-SLMGYSGSKLAQIKFSSILQKRL 253 (298)
Q Consensus 225 ~~~~~~-~~~~Y~asKaa~~~l~~~l~~e~ 253 (298)
...+.. +...|+.+|.+++..++.....+
T Consensus 142 e~~~t~~p~~pyg~tK~~iE~i~~d~~~~~ 171 (343)
T KOG1371|consen 142 EEDPTDQPTNPYGKTKKAIEEIIHDYNKAY 171 (343)
T ss_pred CcCCCCCCCCcchhhhHHHHHHHHhhhccc
Confidence 333333 66789999999999988887665
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.8e-13 Score=130.09 Aligned_cols=177 Identities=12% Similarity=0.018 Sum_probs=124.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHH-HHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDS-VVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~-v~~~~ 139 (298)
-.++++||||||+|.||.+++++|+++ |++|+.++|+........ .. ..+.++.+|++|.++ +++++
T Consensus 312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~-------~~----~~~~~~~gDl~d~~~~l~~~l 380 (660)
T PRK08125 312 AKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFL-------GH----PRFHFVEGDISIHSEWIEYHI 380 (660)
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhc-------CC----CceEEEeccccCcHHHHHHHh
Confidence 346789999999999999999999986 799999999865432211 10 257888999998664 33333
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+ ++|++||+|+...... ..++.+..+++|+.++.++.+++... + .++|++||...+......
T Consensus 381 ~-------~~D~ViHlAa~~~~~~----~~~~~~~~~~~Nv~~t~~ll~a~~~~----~-~~~V~~SS~~vyg~~~~~-- 442 (660)
T PRK08125 381 K-------KCDVVLPLVAIATPIE----YTRNPLRVFELDFEENLKIIRYCVKY----N-KRIIFPSTSEVYGMCTDK-- 442 (660)
T ss_pred c-------CCCEEEECccccCchh----hccCHHHHHHhhHHHHHHHHHHHHhc----C-CeEEEEcchhhcCCCCCC--
Confidence 2 5899999999754321 11234567899999999999887642 2 489999997544321110
Q ss_pred cccccccc------CC-CCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 220 MNVVSGRR------KY-TSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 220 ~~~~~~~~------~~-~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
...... +. .+...|+.||.+.+.+.+.++.++ |+++..+.|+.+..|-
T Consensus 443 --~~~E~~~~~~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~----g~~~~ilR~~~vyGp~ 497 (660)
T PRK08125 443 --YFDEDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKE----GLRFTLFRPFNWMGPR 497 (660)
T ss_pred --CcCccccccccCCCCCCccchHHHHHHHHHHHHHHHHhc----CCceEEEEEceeeCCC
Confidence 011111 11 233579999999999988876654 6899999999988774
|
|
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.9e-13 Score=115.41 Aligned_cols=183 Identities=20% Similarity=0.193 Sum_probs=144.3
Q ss_pred CCEEEEeCC-CCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGS-TSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGa-s~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
..+|||.|. ..-|++.+|.-|-++|+-|+++..+.++.+.+.++- ...+..+..|..++.++...+.+..
T Consensus 3 ~evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed~~~ve~e~---------~~dI~~L~ld~~~~~~~~~~l~~f~ 73 (299)
T PF08643_consen 3 KEVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAEDEKYVESED---------RPDIRPLWLDDSDPSSIHASLSRFA 73 (299)
T ss_pred eeEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHHHHHHHhcc---------CCCCCCcccCCCCCcchHHHHHHHH
Confidence 368999996 799999999999999999999999987766654442 1368888889877777666666665
Q ss_pred cccC--------------CccEEEEccCCC-CCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhc--CCCCeEEEEc
Q 022369 144 GRLG--------------PLHVLINNAGIF-SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR--GSPSRIINVN 206 (298)
Q Consensus 144 ~~~g--------------~idilVnnag~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~--~~~g~Iv~is 206 (298)
+.+. ++..+|...... ..+|++.++.+.|.+.++.|+..++..++.++|+|+. .++.+||.+.
T Consensus 74 ~~L~~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~~~~~~~iil~~ 153 (299)
T PF08643_consen 74 SLLSRPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSRSNQKSKIILFN 153 (299)
T ss_pred HHhcCCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 5443 344455444432 4688999999999999999999999999999999998 2345555544
Q ss_pred -CCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 207 -SVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 207 -S~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
|....... |..++-+....++.+|++.|++|+ ++.||+|..+.-|.++-.
T Consensus 154 Psi~ssl~~---------------PfhspE~~~~~al~~~~~~LrrEl-~~~~I~V~~i~LG~l~i~ 204 (299)
T PF08643_consen 154 PSISSSLNP---------------PFHSPESIVSSALSSFFTSLRREL-RPHNIDVTQIKLGNLDIG 204 (299)
T ss_pred CchhhccCC---------------CccCHHHHHHHHHHHHHHHHHHHh-hhcCCceEEEEeeeeccc
Confidence 55444443 888889999999999999999999 788999999998888765
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-12 Score=116.29 Aligned_cols=173 Identities=16% Similarity=0.065 Sum_probs=115.8
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 68 CIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
+|||||+|.||.+++++|+++|+ .|++++|..... .. .++ ....+..|+.+.+.++.+.+. .+
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~-~~-~~~-----------~~~~~~~d~~~~~~~~~~~~~---~~ 64 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH-KF-LNL-----------ADLVIADYIDKEDFLDRLEKG---AF 64 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch-hh-hhh-----------hheeeeccCcchhHHHHHHhh---cc
Confidence 58999999999999999999998 788887754321 11 111 113456788888777665553 34
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
+++|++||+|+.... +.++.+..+++|+.++.++.+++.. .+ .++|++||...+..... + .....
T Consensus 65 ~~~D~vvh~A~~~~~------~~~~~~~~~~~n~~~~~~ll~~~~~----~~-~~~v~~SS~~vy~~~~~-~---~~e~~ 129 (314)
T TIGR02197 65 GKIEAIFHQGACSDT------TETDGEYMMENNYQYSKRLLDWCAE----KG-IPFIYASSAATYGDGEA-G---FREGR 129 (314)
T ss_pred CCCCEEEECccccCc------cccchHHHHHHHHHHHHHHHHHHHH----hC-CcEEEEccHHhcCCCCC-C---ccccc
Confidence 589999999996421 2345677889999999999988654 23 48999999754432211 0 00111
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
.+..+...|+.+|.+.+.+++....+. ..++++..+.|+.+..+-
T Consensus 130 ~~~~p~~~Y~~sK~~~e~~~~~~~~~~--~~~~~~~~lR~~~vyG~~ 174 (314)
T TIGR02197 130 ELERPLNVYGYSKFLFDQYVRRRVLPE--ALSAQVVGLRYFNVYGPR 174 (314)
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHhHhh--ccCCceEEEEEeeccCCC
Confidence 111245679999999998887532221 135678888888777664
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-12 Score=114.62 Aligned_cols=153 Identities=23% Similarity=0.280 Sum_probs=112.3
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccC
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLG 147 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g 147 (298)
+|||||++.||.+++++|.++|++|++++|+ .+|+.+.++++++++..
T Consensus 2 ilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~---------------------------~~d~~~~~~~~~~~~~~----- 49 (287)
T TIGR01214 2 ILITGANGQLGRELVQQLSPEGRVVVALTSS---------------------------QLDLTDPEALERLLRAI----- 49 (287)
T ss_pred EEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc---------------------------ccCCCCHHHHHHHHHhC-----
Confidence 7999999999999999999999999999885 37999999998887652
Q ss_pred CccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccccc
Q 022369 148 PLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRR 227 (298)
Q Consensus 148 ~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~ 227 (298)
++|++||+||...... ..+..+..+++|+.++..+.+++.. .+ .++|++||...+.+... ..+....
T Consensus 50 ~~d~vi~~a~~~~~~~----~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~v~~Ss~~vy~~~~~----~~~~E~~ 116 (287)
T TIGR01214 50 RPDAVVNTAAYTDVDG----AESDPEKAFAVNALAPQNLARAAAR----HG-ARLVHISTDYVFDGEGK----RPYREDD 116 (287)
T ss_pred CCCEEEECCccccccc----cccCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEeeeeeecCCCC----CCCCCCC
Confidence 6899999999753211 2234567889999999999988643 23 48999999754432111 0011112
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 228 KYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 228 ~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
+..+...|+.+|.+.+.+.+.+ +.++..+.|+.+..+.
T Consensus 117 ~~~~~~~Y~~~K~~~E~~~~~~--------~~~~~ilR~~~v~G~~ 154 (287)
T TIGR01214 117 ATNPLNVYGQSKLAGEQAIRAA--------GPNALIVRTSWLYGGG 154 (287)
T ss_pred CCCCcchhhHHHHHHHHHHHHh--------CCCeEEEEeeecccCC
Confidence 2234567999999888776653 3578889999987775
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-12 Score=119.04 Aligned_cols=178 Identities=13% Similarity=0.051 Sum_probs=119.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+++.+|||||+|.||.+++++|+++|++|++++|......+. +...... .++.++..|+.+.. +
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~---~~~~~~~----~~~~~i~~D~~~~~-----l---- 181 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKEN---VMHHFSN----PNFELIRHDVVEPI-----L---- 181 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhh---hhhhccC----CceEEEECCccChh-----h----
Confidence 568899999999999999999999999999998764322211 1111111 25778889987653 1
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc-cc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM-NV 222 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~-~~ 222 (298)
.++|++||+|+...... ..++.++.+++|+.++.++.+++... + .++|++||...+......+.. ..
T Consensus 182 ---~~~D~ViHlAa~~~~~~----~~~~p~~~~~~Nv~gt~nLleaa~~~----g-~r~V~~SS~~VYg~~~~~p~~E~~ 249 (442)
T PLN02206 182 ---LEVDQIYHLACPASPVH----YKFNPVKTIKTNVVGTLNMLGLAKRV----G-ARFLLTSTSEVYGDPLQHPQVETY 249 (442)
T ss_pred ---cCCCEEEEeeeecchhh----hhcCHHHHHHHHHHHHHHHHHHHHHh----C-CEEEEECChHHhCCCCCCCCCccc
Confidence 25899999998653211 11234678899999999999887542 3 489999998655332111110 00
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
.....+......|+.+|.+.+.++..+..+. ++++..+.|+.+..+.
T Consensus 250 ~~~~~P~~~~s~Y~~SK~~aE~~~~~y~~~~----g~~~~ilR~~~vyGp~ 296 (442)
T PLN02206 250 WGNVNPIGVRSCYDEGKRTAETLTMDYHRGA----NVEVRIARIFNTYGPR 296 (442)
T ss_pred cccCCCCCccchHHHHHHHHHHHHHHHHHHh----CCCeEEEEeccccCCC
Confidence 0011233345679999999998887765544 6888888888887664
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-12 Score=114.24 Aligned_cols=175 Identities=22% Similarity=0.178 Sum_probs=124.8
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccC
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLG 147 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g 147 (298)
+|||||+|.||.+++.+|.++|+.|+.++|...+..... ..+.++.+|+++.+.+.+.++..
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-------------~~~~~~~~d~~~~~~~~~~~~~~----- 64 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL-------------SGVEFVVLDLTDRDLVDELAKGV----- 64 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc-------------cccceeeecccchHHHHHHHhcC-----
Confidence 999999999999999999999999999999866554432 15778899999996555554432
Q ss_pred CccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc-
Q 022369 148 PLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR- 226 (298)
Q Consensus 148 ~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~- 226 (298)
. |.+||+|+....... ... ..+..+.+|+.++.++.+++.. .+..++|+.||...+.+. .... .....
T Consensus 65 ~-d~vih~aa~~~~~~~--~~~-~~~~~~~~nv~gt~~ll~aa~~----~~~~~~v~~ss~~~~~~~-~~~~--~~~E~~ 133 (314)
T COG0451 65 P-DAVIHLAAQSSVPDS--NAS-DPAEFLDVNVDGTLNLLEAARA----AGVKRFVFASSVSVVYGD-PPPL--PIDEDL 133 (314)
T ss_pred C-CEEEEccccCchhhh--hhh-CHHHHHHHHHHHHHHHHHHHHH----cCCCeEEEeCCCceECCC-CCCC--Cccccc
Confidence 1 999999998653211 111 4566899999999999998766 345699996665544433 1100 11121
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.+..+...|+.||.+.+..+.....+ .|+.+..+.|+.+..|...
T Consensus 134 ~~~~p~~~Yg~sK~~~E~~~~~~~~~----~~~~~~ilR~~~vyGp~~~ 178 (314)
T COG0451 134 GPPRPLNPYGVSKLAAEQLLRAYARL----YGLPVVILRPFNVYGPGDK 178 (314)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH----hCCCeEEEeeeeeeCCCCC
Confidence 12222227999999999988888773 4799999999988776644
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.9e-12 Score=109.26 Aligned_cols=178 Identities=20% Similarity=0.216 Sum_probs=101.6
Q ss_pred EeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCC--------CCccEEEEEcCCCCHH------
Q 022369 70 VTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKG--------LPLNIEAMELDLLSLD------ 133 (298)
Q Consensus 70 ITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~D~s~~~------ 133 (298)
||||||-||..+..+|++++. +|++..|..+..+ ..+++.+.....+ ...+++++..|++++.
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~-~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~ 79 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQS-ALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDE 79 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHH-HHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCccccc-chhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChH
Confidence 799999999999999999986 9999999764322 2222221111110 0248999999999854
Q ss_pred HHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccC
Q 022369 134 SVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213 (298)
Q Consensus 134 ~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~ 213 (298)
+.+++.+ ++|++||||+..... ..+++..++|+.|+..+.+.+.. .+..++++||| +...+
T Consensus 80 ~~~~L~~-------~v~~IiH~Aa~v~~~-------~~~~~~~~~NV~gt~~ll~la~~----~~~~~~~~iST-a~v~~ 140 (249)
T PF07993_consen 80 DYQELAE-------EVDVIIHCAASVNFN-------APYSELRAVNVDGTRNLLRLAAQ----GKRKRFHYIST-AYVAG 140 (249)
T ss_dssp HHHHHHH-------H--EEEE--SS-SBS--------S--EEHHHHHHHHHHHHHHHTS----SS---EEEEEE-GGGTT
T ss_pred Hhhcccc-------ccceeeecchhhhhc-------ccchhhhhhHHHHHHHHHHHHHh----ccCcceEEecc-ccccC
Confidence 3333333 589999999965422 24556788999999999998763 22239999999 32222
Q ss_pred CCCcc---c---ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcccc
Q 022369 214 FVDTE---D---MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271 (298)
Q Consensus 214 ~~~~~---~---~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T 271 (298)
..... + ...............|..||+..+.+.+..+.+. |+.+..+.||.|-.
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~----g~p~~I~Rp~~i~g 200 (249)
T PF07993_consen 141 SRPGTIEEKVYPEEEDDLDPPQGFPNGYEQSKWVAERLLREAAQRH----GLPVTIYRPGIIVG 200 (249)
T ss_dssp S-TTT--SSS-HHH--EEE--TTSEE-HHHHHHHHHHHHHHHHHHH-------EEEEEE-EEE-
T ss_pred CCCCcccccccccccccchhhccCCccHHHHHHHHHHHHHHHHhcC----CceEEEEecCcccc
Confidence 21100 0 0011111222444579999999999998887764 78999999999866
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.8e-12 Score=111.85 Aligned_cols=156 Identities=15% Similarity=0.103 Sum_probs=108.9
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
.+|||||+|-||.+++++|+++| +|+.++|... .+..|++|.+.+.++++..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~-----------------------~~~~Dl~d~~~~~~~~~~~---- 53 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG-NLIALDVHST-----------------------DYCGDFSNPEGVAETVRKI---- 53 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC-CEEEeccccc-----------------------cccCCCCCHHHHHHHHHhc----
Confidence 59999999999999999999999 7888887521 2357999999998887753
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
++|++||+|+..... ...++-+..+.+|+.++.++.+++... + .++|++||..-+.+.... .....
T Consensus 54 -~~D~Vih~Aa~~~~~----~~~~~~~~~~~~N~~~~~~l~~aa~~~----g-~~~v~~Ss~~Vy~~~~~~----p~~E~ 119 (299)
T PRK09987 54 -RPDVIVNAAAHTAVD----KAESEPEFAQLLNATSVEAIAKAANEV----G-AWVVHYSTDYVFPGTGDI----PWQET 119 (299)
T ss_pred -CCCEEEECCccCCcc----hhhcCHHHHHHHHHHHHHHHHHHHHHc----C-CeEEEEccceEECCCCCC----CcCCC
Confidence 689999999975421 122334566789999999999876542 2 489999997544332110 11222
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
.+..+...|+.||.+.+.+.+.... +...+.|+.+..|
T Consensus 120 ~~~~P~~~Yg~sK~~~E~~~~~~~~--------~~~ilR~~~vyGp 157 (299)
T PRK09987 120 DATAPLNVYGETKLAGEKALQEHCA--------KHLIFRTSWVYAG 157 (299)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCC--------CEEEEecceecCC
Confidence 3334556799999999887765322 2355566666554
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.40 E-value=7e-12 Score=112.05 Aligned_cols=163 Identities=16% Similarity=0.099 Sum_probs=112.1
Q ss_pred EEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccCC
Q 022369 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGP 148 (298)
Q Consensus 69 lITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g~ 148 (298)
|||||+|.||..+++.|+++|++|+++.++ ..+|+++.++++++++.. +
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~--------------------------~~~Dl~~~~~l~~~~~~~-----~ 49 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH--------------------------KELDLTRQADVEAFFAKE-----K 49 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecc--------------------------ccCCCCCHHHHHHHHhcc-----C
Confidence 699999999999999999999988766432 148999999888877662 6
Q ss_pred ccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc-cccccccccc
Q 022369 149 LHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT-EDMNVVSGRR 227 (298)
Q Consensus 149 idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~-~~~~~~~~~~ 227 (298)
+|++||+|+...... ...++.+..+++|+.++..+.+++.. .+-.++|++||..-+.+.... .+........
T Consensus 50 ~d~Vih~A~~~~~~~---~~~~~~~~~~~~n~~~~~~ll~~~~~----~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~~~ 122 (306)
T PLN02725 50 PTYVILAAAKVGGIH---ANMTYPADFIRENLQIQTNVIDAAYR----HGVKKLLFLGSSCIYPKFAPQPIPETALLTGP 122 (306)
T ss_pred CCEEEEeeeeecccc---hhhhCcHHHHHHHhHHHHHHHHHHHH----cCCCeEEEeCceeecCCCCCCCCCHHHhccCC
Confidence 899999999743111 11123345788899999988887654 344689999997543221110 0000000001
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 228 KYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 228 ~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
..|....|+.||.+.+.+.+.+..+. ++++..+.|+.+..+-
T Consensus 123 ~~p~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~R~~~vyG~~ 164 (306)
T PLN02725 123 PEPTNEWYAIAKIAGIKMCQAYRIQY----GWDAISGMPTNLYGPH 164 (306)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHh----CCCEEEEEecceeCCC
Confidence 11223359999999998887776554 6899999999998875
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-11 Score=114.33 Aligned_cols=178 Identities=13% Similarity=0.055 Sum_probs=118.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+.++++||||+|-||.+++++|+++|++|++++|...........+. .. .++.++..|+.+..
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~---~~----~~~~~~~~Di~~~~---------- 181 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLF---GN----PRFELIRHDVVEPI---------- 181 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhc---cC----CceEEEECcccccc----------
Confidence 34679999999999999999999999999999986432111111111 11 25778888987642
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc-cccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE-DMNV 222 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~-~~~~ 222 (298)
..++|++||+|+....... ..+-+..+++|+.++.++..++... + .++|++||..-+......+ +...
T Consensus 182 --~~~~D~ViHlAa~~~~~~~----~~~p~~~~~~Nv~gT~nLleaa~~~----g-~r~V~~SS~~VYg~~~~~p~~E~~ 250 (436)
T PLN02166 182 --LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G-ARFLLTSTSEVYGDPLEHPQKETY 250 (436)
T ss_pred --ccCCCEEEECceeccchhh----ccCHHHHHHHHHHHHHHHHHHHHHh----C-CEEEEECcHHHhCCCCCCCCCccc
Confidence 1258999999986532211 1234678899999999998876542 2 4899999976543221111 0000
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
.....+......|+.+|.+.+.+++...... ++++..+.|+.|..+.
T Consensus 251 ~~~~~p~~p~s~Yg~SK~~aE~~~~~y~~~~----~l~~~ilR~~~vYGp~ 297 (436)
T PLN02166 251 WGNVNPIGERSCYDEGKRTAETLAMDYHRGA----GVEVRIARIFNTYGPR 297 (436)
T ss_pred cccCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCCeEEEEEccccCCC
Confidence 0011233345679999999998888775543 6888888888887764
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.5e-11 Score=113.20 Aligned_cols=193 Identities=12% Similarity=0.152 Sum_probs=122.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcC---CEEEEEEcCchH---HHHHHHHH---------HHhhcCC---CCCccEEE
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESG---AHVVMAVRNLKA---ANELIQKW---------QEEWSGK---GLPLNIEA 124 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G---~~Vil~~r~~~~---~~~~~~~~---------~~~~~~~---~~~~~~~~ 124 (298)
++||+++||||||.||+.++.+|++.+ .+|++..|..+. .+.+..++ .+..+.. -...++.+
T Consensus 9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~ 88 (491)
T PLN02996 9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP 88 (491)
T ss_pred hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence 568999999999999999999999864 267888886532 11211111 1111100 00137899
Q ss_pred EEcCCCCH-------HHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC
Q 022369 125 MELDLLSL-------DSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG 197 (298)
Q Consensus 125 ~~~D~s~~-------~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~ 197 (298)
+..|++++ +.++++++ ++|++||+|+.... .+..+..+++|+.|+.++.+++... .
T Consensus 89 i~GDl~~~~LGLs~~~~~~~l~~-------~vD~ViH~AA~v~~-------~~~~~~~~~~Nv~gt~~ll~~a~~~---~ 151 (491)
T PLN02996 89 VPGDISYDDLGVKDSNLREEMWK-------EIDIVVNLAATTNF-------DERYDVALGINTLGALNVLNFAKKC---V 151 (491)
T ss_pred EecccCCcCCCCChHHHHHHHHh-------CCCEEEECccccCC-------cCCHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 99999843 33444432 58999999997532 1356778999999999999877542 1
Q ss_pred CCCeEEEEcCCccccCCCCc------c-----------ccc-----------------c-------------cccccCCC
Q 022369 198 SPSRIINVNSVMHYVGFVDT------E-----------DMN-----------------V-------------VSGRRKYT 230 (298)
Q Consensus 198 ~~g~Iv~isS~~~~~~~~~~------~-----------~~~-----------------~-------------~~~~~~~~ 230 (298)
+-.++|++||...+....+. + |.+ . +.......
T Consensus 152 ~~k~~V~vST~~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (491)
T PLN02996 152 KVKMLLHVSTAYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHG 231 (491)
T ss_pred CCCeEEEEeeeEEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCC
Confidence 23489999997655321110 0 000 0 00000112
Q ss_pred CcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch
Q 022369 231 SLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278 (298)
Q Consensus 231 ~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~ 278 (298)
....|+.||++.+.+++.. . .++.+..+.|+.|..+.-...+
T Consensus 232 ~pn~Y~~TK~~aE~lv~~~-----~-~~lpv~i~RP~~V~G~~~~p~~ 273 (491)
T PLN02996 232 WPNTYVFTKAMGEMLLGNF-----K-ENLPLVIIRPTMITSTYKEPFP 273 (491)
T ss_pred CCCchHhhHHHHHHHHHHh-----c-CCCCEEEECCCEeccCCcCCCC
Confidence 2346999999998887543 2 2799999999999887654443
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.4e-11 Score=106.41 Aligned_cols=147 Identities=20% Similarity=0.126 Sum_probs=103.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
+++||||+|.||.+++++|+++|++|++++|+.++.... .. ..+.++.+|++|++++.++++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l----~~--------~~v~~v~~Dl~d~~~l~~al~------ 63 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL----KE--------WGAELVYGDLSLPETLPPSFK------ 63 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH----hh--------cCCEEEECCCCCHHHHHHHHC------
Confidence 599999999999999999999999999999996544322 11 147889999999998876654
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
.+|++||+++... .+.....++|+.++.++.+++.. .+-.++|++||.....
T Consensus 64 -g~d~Vi~~~~~~~---------~~~~~~~~~~~~~~~~l~~aa~~----~gvkr~I~~Ss~~~~~-------------- 115 (317)
T CHL00194 64 -GVTAIIDASTSRP---------SDLYNAKQIDWDGKLALIEAAKA----AKIKRFIFFSILNAEQ-------------- 115 (317)
T ss_pred -CCCEEEECCCCCC---------CCccchhhhhHHHHHHHHHHHHH----cCCCEEEEeccccccc--------------
Confidence 5899999876421 11233566788888777776543 3445999999853210
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccc
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVS 270 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~ 270 (298)
.+...|..+|...+.+.+ ..|++++.+.|+.+.
T Consensus 116 ---~~~~~~~~~K~~~e~~l~--------~~~l~~tilRp~~~~ 148 (317)
T CHL00194 116 ---YPYIPLMKLKSDIEQKLK--------KSGIPYTIFRLAGFF 148 (317)
T ss_pred ---cCCChHHHHHHHHHHHHH--------HcCCCeEEEeecHHh
Confidence 112347778877654432 246888888887543
|
|
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.5e-12 Score=107.62 Aligned_cols=102 Identities=12% Similarity=0.130 Sum_probs=81.1
Q ss_pred CEEEEeCC-CCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGS-TSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGa-s~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+=.||.. ++|||+++|++|+++|++|+++++.. . +.. .....+|+++.++++++++++.+
T Consensus 15 ~VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~-~-------l~~----------~~~~~~Dv~d~~s~~~l~~~v~~ 76 (227)
T TIGR02114 15 SVRSITNHSTGHLGKIITETFLSAGHEVTLVTTKR-A-------LKP----------EPHPNLSIREIETTKDLLITLKE 76 (227)
T ss_pred CceeecCCcccHHHHHHHHHHHHCCCEEEEEcChh-h-------ccc----------ccCCcceeecHHHHHHHHHHHHH
Confidence 44556666 57899999999999999999998631 1 100 00245899999999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHH
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~ 188 (298)
.+|++|+||||||+....++.+.+.++|+++ +..+.|++++
T Consensus 77 ~~g~iDiLVnnAgv~d~~~~~~~s~e~~~~~---~~~~~~~~~~ 117 (227)
T TIGR02114 77 LVQEHDILIHSMAVSDYTPVYMTDLEQVQAS---DNLNEFLSKQ 117 (227)
T ss_pred HcCCCCEEEECCEeccccchhhCCHHHHhhh---cchhhhhccc
Confidence 9999999999999987778888999999977 4456677766
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.3e-10 Score=94.63 Aligned_cols=151 Identities=24% Similarity=0.261 Sum_probs=108.9
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccC
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLG 147 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g 147 (298)
|+|+||+|.+|+.++++|+++|++|+++.|++++.+. . ..+.++++|+.|++++.+.++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~------~--------~~~~~~~~d~~d~~~~~~al~------- 59 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED------S--------PGVEIIQGDLFDPDSVKAALK------- 59 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH------C--------TTEEEEESCTTCHHHHHHHHT-------
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc------c--------cccccceeeehhhhhhhhhhh-------
Confidence 6899999999999999999999999999999998776 1 379999999999988877665
Q ss_pred CccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccccc
Q 022369 148 PLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRR 227 (298)
Q Consensus 148 ~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~ 227 (298)
+.|.+|+++|.... + ...++.++..+++.+..++|++|+...+...... .. ..
T Consensus 60 ~~d~vi~~~~~~~~--------~-------------~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~----~~--~~ 112 (183)
T PF13460_consen 60 GADAVIHAAGPPPK--------D-------------VDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGL----FS--DE 112 (183)
T ss_dssp TSSEEEECCHSTTT--------H-------------HHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSE----EE--GG
T ss_pred hcchhhhhhhhhcc--------c-------------ccccccccccccccccccceeeeccccCCCCCcc----cc--cc
Confidence 68999999976432 0 4566677777777777899999997644432110 00 00
Q ss_pred CCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 228 KYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 228 ~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
..+....|...|...+.+. ...+++...+.|+.+..+..
T Consensus 113 ~~~~~~~~~~~~~~~e~~~--------~~~~~~~~ivrp~~~~~~~~ 151 (183)
T PF13460_consen 113 DKPIFPEYARDKREAEEAL--------RESGLNWTIVRPGWIYGNPS 151 (183)
T ss_dssp TCGGGHHHHHHHHHHHHHH--------HHSTSEEEEEEESEEEBTTS
T ss_pred cccchhhhHHHHHHHHHHH--------HhcCCCEEEEECcEeEeCCC
Confidence 0111234555555443322 12389999999999977753
|
... |
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-10 Score=112.84 Aligned_cols=176 Identities=18% Similarity=0.130 Sum_probs=114.8
Q ss_pred EEEEeCCCCchHHHHHHHHH--HcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHH--HHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLA--ESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSV--VRFSEAW 142 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la--~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v--~~~~~~~ 142 (298)
++|||||+|.||.+++++|+ ++|++|++++|+... .... .+...... .++.++.+|++|++.. ....+++
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~-~~~~-~~~~~~~~----~~v~~~~~Dl~~~~~~~~~~~~~~l 75 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSL-SRLE-ALAAYWGA----DRVVPLVGDLTEPGLGLSEADIAEL 75 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchH-HHHH-HHHHhcCC----CcEEEEecccCCccCCcCHHHHHHh
Confidence 69999999999999999999 589999999997532 2221 22111110 3688999999985310 1122222
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.++|++||+||..... ...+...++|+.++.++.+++. +.+..++|++||...+.......+...
T Consensus 76 ----~~~D~Vih~Aa~~~~~-------~~~~~~~~~nv~gt~~ll~~a~----~~~~~~~v~~SS~~v~g~~~~~~~e~~ 140 (657)
T PRK07201 76 ----GDIDHVVHLAAIYDLT-------ADEEAQRAANVDGTRNVVELAE----RLQAATFHHVSSIAVAGDYEGVFREDD 140 (657)
T ss_pred ----cCCCEEEECceeecCC-------CCHHHHHHHHhHHHHHHHHHHH----hcCCCeEEEEeccccccCccCcccccc
Confidence 3799999999974321 1235567889999888887754 334569999999765432211100000
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
...+......|+.+|...+.+.+. . .|+++..+.|+.|..+
T Consensus 141 --~~~~~~~~~~Y~~sK~~~E~~~~~----~---~g~~~~ilRp~~v~G~ 181 (657)
T PRK07201 141 --FDEGQGLPTPYHRTKFEAEKLVRE----E---CGLPWRVYRPAVVVGD 181 (657)
T ss_pred --chhhcCCCCchHHHHHHHHHHHHH----c---CCCcEEEEcCCeeeec
Confidence 001112345699999999877642 2 3789999999999765
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-10 Score=113.45 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=99.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
.++||||++.||.+++++|+++|++|++++|+.... . . ..+.++.+|++|.+++.++++
T Consensus 2 kILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~------~----~-----~~v~~v~gDL~D~~~l~~al~------ 60 (854)
T PRK05865 2 RIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS------W----P-----SSADFIAADIRDATAVESAMT------ 60 (854)
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh------c----c-----cCceEEEeeCCCHHHHHHHHh------
Confidence 599999999999999999999999999999985321 0 0 146788999999998887765
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
++|++||+|+.... .+++|+.++.++.++ +.+.+.++||++||..
T Consensus 61 -~vD~VVHlAa~~~~-------------~~~vNv~GT~nLLeA----a~~~gvkr~V~iSS~~----------------- 105 (854)
T PRK05865 61 -GADVVAHCAWVRGR-------------NDHINIDGTANVLKA----MAETGTGRIVFTSSGH----------------- 105 (854)
T ss_pred -CCCEEEECCCcccc-------------hHHHHHHHHHHHHHH----HHHcCCCeEEEECCcH-----------------
Confidence 48999999986321 357899998776655 4555567999999941
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
|.+.+.+.+ + +++++..+.|+.+..+-
T Consensus 106 ------------K~aaE~ll~----~----~gl~~vILRp~~VYGP~ 132 (854)
T PRK05865 106 ------------QPRVEQMLA----D----CGLEWVAVRCALIFGRN 132 (854)
T ss_pred ------------HHHHHHHHH----H----cCCCEEEEEeceEeCCC
Confidence 666554432 2 36888888888887663
|
|
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-10 Score=103.04 Aligned_cols=153 Identities=23% Similarity=0.247 Sum_probs=104.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
.+|||||+|-||.++++.|.++|.+|+.++|+ .+|++|.+++.+++++.
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~~~r~---------------------------~~dl~d~~~~~~~~~~~---- 50 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIATSRS---------------------------DLDLTDPEAVAKLLEAF---- 50 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEEESTT---------------------------CS-TTSHHHHHHHHHHH----
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEEeCch---------------------------hcCCCCHHHHHHHHHHh----
Confidence 58999999999999999999999999988776 58999999999998886
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
++|++||+|++.. .+...++-+..+.+|+.++..+.+.+.. .+.++|++||..-+.|....+ +...
T Consensus 51 -~pd~Vin~aa~~~----~~~ce~~p~~a~~iN~~~~~~la~~~~~-----~~~~li~~STd~VFdG~~~~~----y~E~ 116 (286)
T PF04321_consen 51 -KPDVVINCAAYTN----VDACEKNPEEAYAINVDATKNLAEACKE-----RGARLIHISTDYVFDGDKGGP----YTED 116 (286)
T ss_dssp ---SEEEE----------HHHHHHSHHHHHHHHTHHHHHHHHHHHH-----CT-EEEEEEEGGGS-SSTSSS----B-TT
T ss_pred -CCCeEeccceeec----HHhhhhChhhhHHHhhHHHHHHHHHHHH-----cCCcEEEeeccEEEcCCcccc----cccC
Confidence 7999999999743 1223345677899999999999998754 346999999976554431110 1233
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
.+..+...|+.+|...+...+. .. + +...+.++++..+
T Consensus 117 d~~~P~~~YG~~K~~~E~~v~~---~~--~---~~~IlR~~~~~g~ 154 (286)
T PF04321_consen 117 DPPNPLNVYGRSKLEGEQAVRA---AC--P---NALILRTSWVYGP 154 (286)
T ss_dssp S----SSHHHHHHHHHHHHHHH---H---S---SEEEEEE-SEESS
T ss_pred CCCCCCCHHHHHHHHHHHHHHH---hc--C---CEEEEecceeccc
Confidence 3335568899999998876655 22 1 5667777777766
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=98.00 Aligned_cols=146 Identities=14% Similarity=0.018 Sum_probs=92.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+.+|||||+|.||.++++.|+++|++|+... .|+.+.+.+...++.
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~------------------------------~~~~~~~~v~~~l~~--- 55 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS------------------------------GRLENRASLEADIDA--- 55 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEEec------------------------------CccCCHHHHHHHHHh---
Confidence 36799999999999999999999999887432 233445555444443
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc--cccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE--DMNV 222 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~--~~~~ 222 (298)
.++|++||+||...... .+...++-.+.+++|+.++.++..++... + -+.+++||..-+......+ +-..
T Consensus 56 --~~~D~ViH~Aa~~~~~~-~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~----g-v~~v~~sS~~vy~~~~~~p~~~~~~ 127 (298)
T PLN02778 56 --VKPTHVFNAAGVTGRPN-VDWCESHKVETIRANVVGTLTLADVCRER----G-LVLTNYATGCIFEYDDAHPLGSGIG 127 (298)
T ss_pred --cCCCEEEECCcccCCCC-chhhhhCHHHHHHHHHHHHHHHHHHHHHh----C-CCEEEEecceEeCCCCCCCcccCCC
Confidence 26899999999754211 11122445678999999999999987543 2 2345555543221110000 0000
Q ss_pred cc-cccCCCCcccchhhHHHHHHHHHHHHH
Q 022369 223 VS-GRRKYTSLMGYSGSKLAQIKFSSILQK 251 (298)
Q Consensus 223 ~~-~~~~~~~~~~Y~asKaa~~~l~~~l~~ 251 (298)
+. ...+.+....|+.||.+.+.+++..+.
T Consensus 128 ~~Ee~~p~~~~s~Yg~sK~~~E~~~~~y~~ 157 (298)
T PLN02778 128 FKEEDTPNFTGSFYSKTKAMVEELLKNYEN 157 (298)
T ss_pred CCcCCCCCCCCCchHHHHHHHHHHHHHhhc
Confidence 11 112333446799999999998877543
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=97.98 Aligned_cols=185 Identities=20% Similarity=0.177 Sum_probs=118.6
Q ss_pred CEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCch---HHHHHHHHHHHhhc-CCCCCccEEEEEcCCCCH------HH
Q 022369 66 LTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLK---AANELIQKWQEEWS-GKGLPLNIEAMELDLLSL------DS 134 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~s~~------~~ 134 (298)
+++++|||||-||..+..+|..+ .++|++.-|-.. ..+.+.+.+..... ..-...++..+..|++.+ ..
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 47999999999999999999866 459999877433 22222222220000 011235899999999943 33
Q ss_pred HHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC
Q 022369 135 VVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 135 v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~ 214 (298)
.+++++ .+|.+|||+..... ...+.+....|+.|+..+.+.+.. .+...+.+|||.+-....
T Consensus 81 ~~~La~-------~vD~I~H~gA~Vn~-------v~pYs~L~~~NVlGT~evlrLa~~----gk~Kp~~yVSsisv~~~~ 142 (382)
T COG3320 81 WQELAE-------NVDLIIHNAALVNH-------VFPYSELRGANVLGTAEVLRLAAT----GKPKPLHYVSSISVGETE 142 (382)
T ss_pred HHHHhh-------hcceEEecchhhcc-------cCcHHHhcCcchHhHHHHHHHHhc----CCCceeEEEeeeeecccc
Confidence 444433 69999999986531 123567788999999999986543 223359999998654433
Q ss_pred CCcccccccc-----cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 215 VDTEDMNVVS-----GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 215 ~~~~~~~~~~-----~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
.......... -...-.....|+-||++.+.+++.- .+.|.++..+.||+|-.+-
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A-----~~rGLpv~I~Rpg~I~gds 201 (382)
T COG3320 143 YYSNFTVDFDEISPTRNVGQGLAGGYGRSKWVAEKLVREA-----GDRGLPVTIFRPGYITGDS 201 (382)
T ss_pred ccCCCccccccccccccccCccCCCcchhHHHHHHHHHHH-----hhcCCCeEEEecCeeeccC
Confidence 2211110000 0111233467999999988776653 4559999999999995443
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.6e-10 Score=100.19 Aligned_cols=185 Identities=16% Similarity=0.089 Sum_probs=128.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++.++|||||+|-+|++++.+|.++| ..|.++|..+..-.--.+.. .. ...++.++++|+.+..++.+...
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~-~~-----~~~~v~~~~~D~~~~~~i~~a~~- 75 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELT-GF-----RSGRVTVILGDLLDANSISNAFQ- 75 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhh-cc-----cCCceeEEecchhhhhhhhhhcc-
Confidence 45799999999999999999999998 68999998764211111111 10 11489999999999998877765
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
.. .+||+|....+. .-..+-+..+++|+.|+-++..++.. .+-.++|++||..-.++... ..
T Consensus 76 ------~~-~Vvh~aa~~~~~----~~~~~~~~~~~vNV~gT~nvi~~c~~----~~v~~lIYtSs~~Vvf~g~~---~~ 137 (361)
T KOG1430|consen 76 ------GA-VVVHCAASPVPD----FVENDRDLAMRVNVNGTLNVIEACKE----LGVKRLIYTSSAYVVFGGEP---II 137 (361)
T ss_pred ------Cc-eEEEeccccCcc----ccccchhhheeecchhHHHHHHHHHH----hCCCEEEEecCceEEeCCee---cc
Confidence 45 677776654322 22236788899999998777776544 45569999999876665432 23
Q ss_pred ccccccCCCCc--ccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 222 VVSGRRKYTSL--MGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 222 ~~~~~~~~~~~--~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
..++..++|.- ..|+.||+-.+.+..... ...+..-.++.|-.|..|--+..
T Consensus 138 n~~E~~p~p~~~~d~Y~~sKa~aE~~Vl~an----~~~~l~T~aLR~~~IYGpgd~~~ 191 (361)
T KOG1430|consen 138 NGDESLPYPLKHIDPYGESKALAEKLVLEAN----GSDDLYTCALRPPGIYGPGDKRL 191 (361)
T ss_pred cCCCCCCCccccccccchHHHHHHHHHHHhc----CCCCeeEEEEccccccCCCCccc
Confidence 33455566643 489999987766555432 23467788889999988876554
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-09 Score=104.56 Aligned_cols=199 Identities=12% Similarity=0.167 Sum_probs=125.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC---EEEEEEcCchH---HHHHHHHH---------HHhhcCC---CCCccEEE
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA---HVVMAVRNLKA---ANELIQKW---------QEEWSGK---GLPLNIEA 124 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~---~Vil~~r~~~~---~~~~~~~~---------~~~~~~~---~~~~~~~~ 124 (298)
++||+++||||+|-||+.++.+|++.+. +|++..|.... .+.+.+++ ++..+.. -...++.+
T Consensus 117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~ 196 (605)
T PLN02503 117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP 196 (605)
T ss_pred hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence 4689999999999999999999998653 67888885432 22221122 1111110 00147999
Q ss_pred EEcCCCCHH-----HHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCC
Q 022369 125 MELDLLSLD-----SVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSP 199 (298)
Q Consensus 125 ~~~D~s~~~-----~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~ 199 (298)
+..|+++++ +..+ .+.+ ++|++||+|+.... .+..+..+++|+.|+.++++.+... .+.
T Consensus 197 v~GDl~d~~LGLs~~~~~---~L~~---~vDiVIH~AA~v~f-------~~~~~~a~~vNV~GT~nLLelA~~~---~~l 260 (605)
T PLN02503 197 VVGNVCESNLGLEPDLAD---EIAK---EVDVIINSAANTTF-------DERYDVAIDINTRGPCHLMSFAKKC---KKL 260 (605)
T ss_pred EEeeCCCcccCCCHHHHH---HHHh---cCCEEEECcccccc-------ccCHHHHHHHHHHHHHHHHHHHHHc---CCC
Confidence 999999973 2222 2221 59999999997531 1457788999999999999976542 122
Q ss_pred CeEEEEcCCccccCC---CCccccc-----------------------------c-----c-----------------cc
Q 022369 200 SRIINVNSVMHYVGF---VDTEDMN-----------------------------V-----V-----------------SG 225 (298)
Q Consensus 200 g~Iv~isS~~~~~~~---~~~~~~~-----------------------------~-----~-----------------~~ 225 (298)
.++|++||...+... +...... . . ..
T Consensus 261 k~fV~vSTayVyG~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~ 340 (605)
T PLN02503 261 KLFLQVSTAYVNGQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLER 340 (605)
T ss_pred CeEEEccCceeecCCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccch
Confidence 479999986544321 1110000 0 0 00
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHH
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQA 283 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~ 283 (298)
..-.+....|..||+..+.+.+. . . .++.+..+.|..|.+.+.+.+|.+.+.
T Consensus 341 ~~~~~~pNtYt~TK~lAE~lV~~----~-~-~~LPv~IvRPsiV~st~~eP~pGw~d~ 392 (605)
T PLN02503 341 AKLYGWQDTYVFTKAMGEMVINS----M-R-GDIPVVIIRPSVIESTWKDPFPGWMEG 392 (605)
T ss_pred hhhCCCCChHHHHHHHHHHHHHH----h-c-CCCCEEEEcCCEecccccCCccccccC
Confidence 01123346699999877776653 2 2 378999999999977776666665554
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.4e-10 Score=93.28 Aligned_cols=84 Identities=20% Similarity=0.265 Sum_probs=72.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
+++||||+ |+|.++++.|+++|++|++++|+.++.+.+...+.. ...+.++.+|++|++++.++++.+.+.+
T Consensus 2 ~vlVtGGt-G~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~-------~~~i~~~~~Dv~d~~sv~~~i~~~l~~~ 73 (177)
T PRK08309 2 HALVIGGT-GMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTT-------PESITPLPLDYHDDDALKLAIKSTIEKN 73 (177)
T ss_pred EEEEECcC-HHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhc-------CCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 68999998 888899999999999999999998877766544421 1368889999999999999999999989
Q ss_pred CCccEEEEccCC
Q 022369 147 GPLHVLINNAGI 158 (298)
Q Consensus 147 g~idilVnnag~ 158 (298)
|.+|++|+.+-.
T Consensus 74 g~id~lv~~vh~ 85 (177)
T PRK08309 74 GPFDLAVAWIHS 85 (177)
T ss_pred CCCeEEEEeccc
Confidence 999999987655
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.7e-10 Score=95.83 Aligned_cols=136 Identities=21% Similarity=0.229 Sum_probs=106.4
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccC
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLG 147 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g 147 (298)
+||||++|-+|.++++.|. .+..|+.++|. .+|++|++.+.+++++.
T Consensus 3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~---------------------------~~Ditd~~~v~~~i~~~----- 49 (281)
T COG1091 3 ILITGANGQLGTELRRALP-GEFEVIATDRA---------------------------ELDITDPDAVLEVIRET----- 49 (281)
T ss_pred EEEEcCCChHHHHHHHHhC-CCceEEeccCc---------------------------cccccChHHHHHHHHhh-----
Confidence 8999999999999999999 66899988876 28999999999999986
Q ss_pred CccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccccc
Q 022369 148 PLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRR 227 (298)
Q Consensus 148 ~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~ 227 (298)
++|++||+|++... +....+-+..+.+|..|+.++.+++-. -+..+|++|+-.-+.|.-. +.+....
T Consensus 50 ~PDvVIn~AAyt~v----D~aE~~~e~A~~vNa~~~~~lA~aa~~-----~ga~lVhiSTDyVFDG~~~----~~Y~E~D 116 (281)
T COG1091 50 RPDVVINAAAYTAV----DKAESEPELAFAVNATGAENLARAAAE-----VGARLVHISTDYVFDGEKG----GPYKETD 116 (281)
T ss_pred CCCEEEECcccccc----ccccCCHHHHHHhHHHHHHHHHHHHHH-----hCCeEEEeecceEecCCCC----CCCCCCC
Confidence 89999999998542 223345678899999999999998644 3579999999765555421 1112333
Q ss_pred CCCCcccchhhHHHHHHHHHHH
Q 022369 228 KYTSLMGYSGSKLAQIKFSSIL 249 (298)
Q Consensus 228 ~~~~~~~Y~asKaa~~~l~~~l 249 (298)
...+...|+.||.+-+...+..
T Consensus 117 ~~~P~nvYG~sKl~GE~~v~~~ 138 (281)
T COG1091 117 TPNPLNVYGRSKLAGEEAVRAA 138 (281)
T ss_pred CCCChhhhhHHHHHHHHHHHHh
Confidence 4456678999999988877664
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5e-10 Score=96.10 Aligned_cols=195 Identities=18% Similarity=0.056 Sum_probs=136.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|++||||-+|-=|..+|+.|+++|+.|.-+.|+......---.+.+.... ...+++.+.+|++|..++.++++++
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~--~~~~l~l~~gDLtD~~~l~r~l~~v-- 77 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHL--NDPRLHLHYGDLTDSSNLLRILEEV-- 77 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceecccccc--CCceeEEEeccccchHHHHHHHHhc--
Confidence 689999999999999999999999999999887633222110022221111 1136889999999999999999987
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
++|-+.|-|+.+.. ..|.++-+.+.+++-.|+.++..++--.- .++-++..-||..-+......+. .
T Consensus 78 ---~PdEIYNLaAQS~V----~vSFe~P~~T~~~~~iGtlrlLEaiR~~~--~~~~rfYQAStSE~fG~v~~~pq----~ 144 (345)
T COG1089 78 ---QPDEIYNLAAQSHV----GVSFEQPEYTADVDAIGTLRLLEAIRILG--EKKTRFYQASTSELYGLVQEIPQ----K 144 (345)
T ss_pred ---Cchhheeccccccc----cccccCcceeeeechhHHHHHHHHHHHhC--CcccEEEecccHHhhcCcccCcc----c
Confidence 78989998887653 34556677889999999999988764432 22346666666433221211111 3
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcC--CCCCcEEEEeeCCccccCccCC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLP--AESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~--~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
...|+.+.++|+++|....-++...+..+. +..||-+|.=+|.-=.|=.+++
T Consensus 145 E~TPFyPrSPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRK 198 (345)
T COG1089 145 ETTPFYPRSPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRK 198 (345)
T ss_pred cCCCCCCCCHHHHHHHHHHheeeehHhhcCceeecceeecCCCCCCccceehHH
Confidence 556778889999999998888887776663 4567888877775444433443
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.4e-09 Score=93.92 Aligned_cols=167 Identities=17% Similarity=0.126 Sum_probs=95.9
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccC
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLG 147 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g 147 (298)
+|||||+|.||.+++++|+++|++|++++|+.++..... ... ..|+.. ... .+.+.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--------------~~~--~~~~~~-~~~-------~~~~~ 56 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTK--------------WEG--YKPWAP-LAE-------SEALE 56 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCccc--------------cee--eecccc-cch-------hhhcC
Confidence 589999999999999999999999999999876543221 000 112221 111 12235
Q ss_pred CccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCC--CeEEEEcCCccccCCCCccccccccc
Q 022369 148 PLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSP--SRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 148 ~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~--g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
.+|++||+||..... ...+.+..+..+++|+.++..+.+++.. .+. ..+|+.|+.. ..+... ...+..
T Consensus 57 ~~D~Vvh~a~~~~~~--~~~~~~~~~~~~~~n~~~~~~l~~a~~~----~~~~~~~~i~~S~~~-~yg~~~---~~~~~E 126 (292)
T TIGR01777 57 GADAVINLAGEPIAD--KRWTEERKQEIRDSRIDTTRALVEAIAA----AEQKPKVFISASAVG-YYGTSE---DRVFTE 126 (292)
T ss_pred CCCEEEECCCCCccc--ccCCHHHHHHHHhcccHHHHHHHHHHHh----cCCCceEEEEeeeEE-EeCCCC---CCCcCc
Confidence 799999999974321 2234455667889999998888887643 222 2444444432 222110 001111
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
..+......|+..+...+. ....+ ...++++..+.|+.+..+-
T Consensus 127 ~~~~~~~~~~~~~~~~~e~----~~~~~-~~~~~~~~ilR~~~v~G~~ 169 (292)
T TIGR01777 127 EDSPAGDDFLAELCRDWEE----AAQAA-EDLGTRVVLLRTGIVLGPK 169 (292)
T ss_pred ccCCCCCChHHHHHHHHHH----Hhhhc-hhcCCceEEEeeeeEECCC
Confidence 1111112223333332222 22233 3457999999999998774
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.6e-08 Score=98.71 Aligned_cols=155 Identities=12% Similarity=0.021 Sum_probs=101.5
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
+.+|||||+|-||.++++.|.++|++|.. ...|++|.+.+.+.++..
T Consensus 381 mkiLVtGa~G~iG~~l~~~L~~~g~~v~~------------------------------~~~~l~d~~~v~~~i~~~--- 427 (668)
T PLN02260 381 LKFLIYGRTGWIGGLLGKLCEKQGIAYEY------------------------------GKGRLEDRSSLLADIRNV--- 427 (668)
T ss_pred ceEEEECCCchHHHHHHHHHHhCCCeEEe------------------------------eccccccHHHHHHHHHhh---
Confidence 56999999999999999999999987631 124677888877776653
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc--cccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED--MNVV 223 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~--~~~~ 223 (298)
++|++||+|+...... .+...++-+..+++|+.++.++.+++... +.+.|++||..-+.+....+. -..+
T Consensus 428 --~pd~Vih~Aa~~~~~~-~~~~~~~~~~~~~~N~~gt~~l~~a~~~~-----g~~~v~~Ss~~v~~~~~~~~~~~~~p~ 499 (668)
T PLN02260 428 --KPTHVFNAAGVTGRPN-VDWCESHKVETIRANVVGTLTLADVCREN-----GLLMMNFATGCIFEYDAKHPEGSGIGF 499 (668)
T ss_pred --CCCEEEECCcccCCCC-CChHHhCHHHHHHHHhHHHHHHHHHHHHc-----CCeEEEEcccceecCCcccccccCCCC
Confidence 6899999999753211 12234456788999999999999987652 235667766433221100000 0001
Q ss_pred ccc-cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEee
Q 022369 224 SGR-RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVS 265 (298)
Q Consensus 224 ~~~-~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~ 265 (298)
... .+.+....|+.||.+.+.+++.... ...+|+..+.
T Consensus 500 ~E~~~~~~~~~~Yg~sK~~~E~~~~~~~~----~~~~r~~~~~ 538 (668)
T PLN02260 500 KEEDKPNFTGSFYSKTKAMVEELLREYDN----VCTLRVRMPI 538 (668)
T ss_pred CcCCCCCCCCChhhHHHHHHHHHHHhhhh----heEEEEEEec
Confidence 111 2223447899999999988876532 2356666655
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.5e-08 Score=103.91 Aligned_cols=190 Identities=18% Similarity=0.130 Sum_probs=118.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcC----CEEEEEEcCchHHHHHHHHHHHhhcCCC-----CCccEEEEEcCCCCHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESG----AHVVMAVRNLKAANELIQKWQEEWSGKG-----LPLNIEAMELDLLSLDS 134 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G----~~Vil~~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~s~~~~ 134 (298)
..++++||||+|.||.+++.+|+++| .+|++..|+....+.. +.+.......+ ...++.++.+|++++.-
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~-~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~l 1048 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGL-ERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKF 1048 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHH-HHHHHHHHHhCCCchhhhcceEEEeccCCCccC
Confidence 35789999999999999999999887 7899888875443322 22222111000 01268899999986521
Q ss_pred H--HHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcccc
Q 022369 135 V--VRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYV 212 (298)
Q Consensus 135 v--~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~ 212 (298)
- ....+++. ..+|++||||+.... . ..++.....|+.|+.++.+.+.. .+..+++++||.+.+.
T Consensus 1049 gl~~~~~~~l~---~~~d~iiH~Aa~~~~----~---~~~~~~~~~nv~gt~~ll~~a~~----~~~~~~v~vSS~~v~~ 1114 (1389)
T TIGR03443 1049 GLSDEKWSDLT---NEVDVIIHNGALVHW----V---YPYSKLRDANVIGTINVLNLCAE----GKAKQFSFVSSTSALD 1114 (1389)
T ss_pred CcCHHHHHHHH---hcCCEEEECCcEecC----c---cCHHHHHHhHHHHHHHHHHHHHh----CCCceEEEEeCeeecC
Confidence 0 11122222 368999999997531 1 12444556799999999887643 2345899999976553
Q ss_pred CCCCcc--------cccccccc-----cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 213 GFVDTE--------DMNVVSGR-----RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 213 ~~~~~~--------~~~~~~~~-----~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
...... ........ .+......|+.||++.+.+.+..+ ..|+++..+.||.|..+-
T Consensus 1115 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~-----~~g~~~~i~Rpg~v~G~~ 1183 (1389)
T TIGR03443 1115 TEYYVNLSDELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAG-----KRGLRGCIVRPGYVTGDS 1183 (1389)
T ss_pred cccccchhhhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHH-----hCCCCEEEECCCccccCC
Confidence 210000 00000000 011123569999999988876542 238999999999997664
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.3e-09 Score=91.86 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=77.1
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccC
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLG 147 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g 147 (298)
++||||+|.+|..++++|+++|++|.++.|++++... ..+..+.+|+.|++++.++++... .+.
T Consensus 2 ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~---------------~~~~~~~~d~~d~~~l~~a~~~~~-~~~ 65 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG---------------PNEKHVKFDWLDEDTWDNPFSSDD-GME 65 (285)
T ss_pred EEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC---------------CCCccccccCCCHHHHHHHHhccc-CcC
Confidence 7999999999999999999999999999999775321 134566789999999998886542 233
Q ss_pred C-ccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 022369 148 P-LHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM 209 (298)
Q Consensus 148 ~-idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~ 209 (298)
. +|.++++++... +.. ...+.++..+++.+-.+||++||..
T Consensus 66 g~~d~v~~~~~~~~---------~~~------------~~~~~~i~aa~~~gv~~~V~~Ss~~ 107 (285)
T TIGR03649 66 PEISAVYLVAPPIP---------DLA------------PPMIKFIDFARSKGVRRFVLLSASI 107 (285)
T ss_pred CceeEEEEeCCCCC---------Chh------------HHHHHHHHHHHHcCCCEEEEeeccc
Confidence 4 899998876421 011 1223445556666667999999853
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.6e-09 Score=97.04 Aligned_cols=83 Identities=18% Similarity=0.253 Sum_probs=64.5
Q ss_pred CCCCCCEEEEeCC---------------CCc-hHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEE
Q 022369 61 PPVNDLTCIVTGS---------------TSG-IGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124 (298)
Q Consensus 61 ~~~~~k~vlITGa---------------s~G-IG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (298)
.+++||++||||| |+| +|.++|++|+++|++|++++++.+ ++ . + ...
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~-~~-------~--~-------~~~ 246 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVN-LP-------T--P-------AGV 246 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcc-cc-------C--C-------CCc
Confidence 3578999999999 555 999999999999999999998752 11 0 0 013
Q ss_pred EEcCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCC
Q 022369 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGE 163 (298)
Q Consensus 125 ~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~ 163 (298)
..+|+++.+++.+.+. +.++++|++|||||+....+
T Consensus 247 ~~~dv~~~~~~~~~v~---~~~~~~DilI~~Aav~d~~~ 282 (399)
T PRK05579 247 KRIDVESAQEMLDAVL---AALPQADIFIMAAAVADYRP 282 (399)
T ss_pred EEEccCCHHHHHHHHH---HhcCCCCEEEEccccccccc
Confidence 4679999888877766 44788999999999875444
|
|
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-07 Score=74.39 Aligned_cols=179 Identities=14% Similarity=0.088 Sum_probs=120.6
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
..|+|-||-+-+|.+++..|-++++-|.-+|-.+..-. +.-..+..|-+=.++-+.+.+++-+.
T Consensus 4 grVivYGGkGALGSacv~~FkannywV~siDl~eNe~A----------------d~sI~V~~~~swtEQe~~v~~~vg~s 67 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQA----------------DSSILVDGNKSWTEQEQSVLEQVGSS 67 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccc----------------cceEEecCCcchhHHHHHHHHHHHHh
Confidence 46899999999999999999999999988776532110 12234445555455556666666554
Q ss_pred c--CCccEEEEccCCCCCCCCC-ccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 146 L--GPLHVLINNAGIFSIGEPQ-KFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 146 ~--g~idilVnnag~~~~~~~~-~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
+ .++|.+++-||....+.-. .--..+.+-++.-.+.....-.+....+++. +|-.-.....+++.+.
T Consensus 68 L~gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~--GGLL~LtGAkaAl~gT-------- 137 (236)
T KOG4022|consen 68 LQGEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKP--GGLLQLTGAKAALGGT-------- 137 (236)
T ss_pred hcccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCC--CceeeecccccccCCC--------
Confidence 4 3699999999876544321 1111223334444455555555555556654 3344444444444444
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcC-CCCCcEEEEeeCCccccCccCCc
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLP-AESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~-~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
|+...|+.+|+|+.+++++|+.+-. -+.|--+.+|-|=..+|||.+++
T Consensus 138 -------PgMIGYGMAKaAVHqLt~SLaak~SGlP~gsaa~~ilPVTLDTPMNRKw 186 (236)
T KOG4022|consen 138 -------PGMIGYGMAKAAVHQLTSSLAAKDSGLPDGSAALTILPVTLDTPMNRKW 186 (236)
T ss_pred -------CcccchhHHHHHHHHHHHHhcccccCCCCCceeEEEeeeeccCcccccc
Confidence 8888899999999999999998863 35677888999999999999886
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-08 Score=86.69 Aligned_cols=182 Identities=18% Similarity=0.115 Sum_probs=126.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHc--CCEEEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAES--GAHVVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~--G~~Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+.++||||.+-||...+..++.. .++.+.++.-. ..++. .+++. ...+.++++.|+.+...+..+..
T Consensus 6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~-l~~~~-------n~p~ykfv~~di~~~~~~~~~~~ 77 (331)
T KOG0747|consen 6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKN-LEPVR-------NSPNYKFVEGDIADADLVLYLFE 77 (331)
T ss_pred cceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccch-hhhhc-------cCCCceEeeccccchHHHHhhhc
Confidence 388999999999999999999876 56666654310 01111 12221 12589999999999998877665
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+ ..||.++|-|...... .+.-+--...+.|++++..|..++.... +-.++|.||+-.-+...-+
T Consensus 78 ~-----~~id~vihfaa~t~vd----~s~~~~~~~~~nnil~t~~Lle~~~~sg---~i~~fvhvSTdeVYGds~~---- 141 (331)
T KOG0747|consen 78 T-----EEIDTVIHFAAQTHVD----RSFGDSFEFTKNNILSTHVLLEAVRVSG---NIRRFVHVSTDEVYGDSDE---- 141 (331)
T ss_pred c-----CchhhhhhhHhhhhhh----hhcCchHHHhcCCchhhhhHHHHHHhcc---CeeEEEEecccceecCccc----
Confidence 4 4899999999875422 1112233456789999999999887654 3458999999764443211
Q ss_pred cccc-cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 221 NVVS-GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 221 ~~~~-~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
+... ......+..+|+++|+|.+++.+++.+.+ |+.+..+.-+-|..|--
T Consensus 142 ~~~~~E~s~~nPtnpyAasKaAaE~~v~Sy~~sy----~lpvv~~R~nnVYGP~q 192 (331)
T KOG0747|consen 142 DAVVGEASLLNPTNPYAASKAAAEMLVRSYGRSY----GLPVVTTRMNNVYGPNQ 192 (331)
T ss_pred cccccccccCCCCCchHHHHHHHHHHHHHHhhcc----CCcEEEEeccCccCCCc
Confidence 1111 22223455779999999999999998887 78888888777777653
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.5e-08 Score=90.20 Aligned_cols=84 Identities=19% Similarity=0.138 Sum_probs=65.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCE-EEEEEcCc---hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAH-VVMAVRNL---KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~-Vil~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
++++|+++|||| ||+|++++..|++.|++ |++++|+. ++++++.+++.+.. ..+.+..+|+++.+++++
T Consensus 123 ~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~------~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 123 DVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV------PECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC------CCceeEEechhhhhHHHh
Confidence 467899999999 69999999999999995 99999997 67777777664421 234566789888777655
Q ss_pred HHHHHhcccCCccEEEEccCCC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIF 159 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~ 159 (298)
.++ ..|+||||..++
T Consensus 196 ~~~-------~~DilINaTp~G 210 (289)
T PRK12548 196 EIA-------SSDILVNATLVG 210 (289)
T ss_pred hhc-------cCCEEEEeCCCC
Confidence 443 459999998664
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.4e-08 Score=84.27 Aligned_cols=183 Identities=15% Similarity=0.137 Sum_probs=124.3
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
....+++++||||++.||.++|..|..+|+.|+++|.-.+.-....+.+... ..+..+..|+..+ ++.
T Consensus 23 ~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~~~-------~~fel~~hdv~~p-----l~~ 90 (350)
T KOG1429|consen 23 KPSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWIGH-------PNFELIRHDVVEP-----LLK 90 (350)
T ss_pred cCCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhccC-------cceeEEEeechhH-----HHH
Confidence 3456789999999999999999999999999999987655444443333221 2566666777655 333
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
.+|.++|-|....+-.+.. .--+++..|++++.+++..+.. -+.|++..|++.-+.-....+..
T Consensus 91 -------evD~IyhLAapasp~~y~~----npvktIktN~igtln~lglakr-----v~aR~l~aSTseVYgdp~~hpq~ 154 (350)
T KOG1429|consen 91 -------EVDQIYHLAAPASPPHYKY----NPVKTIKTNVIGTLNMLGLAKR-----VGARFLLASTSEVYGDPLVHPQV 154 (350)
T ss_pred -------HhhhhhhhccCCCCccccc----CccceeeecchhhHHHHHHHHH-----hCceEEEeecccccCCcccCCCc
Confidence 4677888887655333221 2235688899999998886533 34688888887655443333332
Q ss_pred ccccc-ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 221 NVVSG-RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ~~~~~-~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
...-+ ..+....++|...|...+.|+....++ .||.|....+.-+..|.+.
T Consensus 155 e~ywg~vnpigpr~cydegKr~aE~L~~~y~k~----~giE~rIaRifNtyGPrm~ 206 (350)
T KOG1429|consen 155 ETYWGNVNPIGPRSCYDEGKRVAETLCYAYHKQ----EGIEVRIARIFNTYGPRMH 206 (350)
T ss_pred cccccccCcCCchhhhhHHHHHHHHHHHHhhcc----cCcEEEEEeeecccCCccc
Confidence 22222 345567788999998888777665554 4888888888887777654
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-07 Score=87.08 Aligned_cols=159 Identities=14% Similarity=0.132 Sum_probs=97.1
Q ss_pred CCCCEEEEe----CCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHH----HHHHhhcCCCCCccEEEEEcCCCCHHH
Q 022369 63 VNDLTCIVT----GSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQ----KWQEEWSGKGLPLNIEAMELDLLSLDS 134 (298)
Q Consensus 63 ~~~k~vlIT----Gas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~s~~~~ 134 (298)
...+.+||| ||+|.||..++++|+++|++|++++|+.+....... ...+ ... ..+.++.+|+.|
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~-l~~----~~v~~v~~D~~d--- 121 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSE-LSS----AGVKTVWGDPAD--- 121 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhH-hhh----cCceEEEecHHH---
Confidence 344789999 999999999999999999999999998765332211 0000 000 137788899876
Q ss_pred HHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC
Q 022369 135 VVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 135 v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~ 214 (298)
+.+++. ...+|++|++++.. .+ + ++.++..+++.+-.++|++||...+...
T Consensus 122 ~~~~~~-----~~~~d~Vi~~~~~~---------~~-----------~----~~~ll~aa~~~gvkr~V~~SS~~vyg~~ 172 (378)
T PLN00016 122 VKSKVA-----GAGFDVVYDNNGKD---------LD-----------E----VEPVADWAKSPGLKQFLFCSSAGVYKKS 172 (378)
T ss_pred HHhhhc-----cCCccEEEeCCCCC---------HH-----------H----HHHHHHHHHHcCCCEEEEEccHhhcCCC
Confidence 322221 13699999987631 11 1 2334444555555699999997544321
Q ss_pred CCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
...+. ....+. ..+. +|...+.+.+ + .++++..+.|+.+..+..
T Consensus 173 ~~~p~----~E~~~~---~p~~-sK~~~E~~l~----~----~~l~~~ilRp~~vyG~~~ 216 (378)
T PLN00016 173 DEPPH----VEGDAV---KPKA-GHLEVEAYLQ----K----LGVNWTSFRPQYIYGPGN 216 (378)
T ss_pred CCCCC----CCCCcC---CCcc-hHHHHHHHHH----H----cCCCeEEEeceeEECCCC
Confidence 11000 011111 1122 6776665432 2 378999999999988754
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.4e-07 Score=92.52 Aligned_cols=103 Identities=19% Similarity=0.206 Sum_probs=76.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
++|||||+|.||.+++++|.++|++|++++|+.... . ...+.++.+|++++. +.+++
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~-------~--------~~~ve~v~~Dl~d~~-l~~al------- 58 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA-------L--------DPRVDYVCASLRNPV-LQELA------- 58 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc-------c--------cCCceEEEccCCCHH-HHHHh-------
Confidence 599999999999999999999999999999874321 0 025778999999984 33322
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM 209 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~ 209 (298)
.++|++||+|+..... ...+|+.++.++.+++. +.+ .++|++||..
T Consensus 59 ~~~D~VIHLAa~~~~~------------~~~vNv~Gt~nLleAA~----~~G-vRiV~~SS~~ 104 (699)
T PRK12320 59 GEADAVIHLAPVDTSA------------PGGVGITGLAHVANAAA----RAG-ARLLFVSQAA 104 (699)
T ss_pred cCCCEEEEcCccCccc------------hhhHHHHHHHHHHHHHH----HcC-CeEEEEECCC
Confidence 2589999999863210 12478889988888763 333 4899999863
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-06 Score=81.91 Aligned_cols=198 Identities=16% Similarity=0.061 Sum_probs=132.3
Q ss_pred CCCCCCCCCEEEEeCCC-CchHHHHHHHHHHcCCEEEEEEcCc-hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHH
Q 022369 58 LPLPPVNDLTCIVTGST-SGIGREIARQLAESGAHVVMAVRNL-KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSV 135 (298)
Q Consensus 58 ~~~~~~~~k~vlITGas-~GIG~~~a~~la~~G~~Vil~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v 135 (298)
.+..+..+|++|||||+ +.||.+++..|+..|++||++..+. ++..+..+.+-..+... +..+-++..+.++..+|
T Consensus 389 p~~~~y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~--ga~LwvVpaN~~SysDV 466 (866)
T COG4982 389 PNGGTYGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARY--GAALWVVPANMGSYSDV 466 (866)
T ss_pred CCCCCcccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCC--CceEEEEeccccchhhH
Confidence 34456788999999999 7899999999999999999986554 44556666665554433 35788888999999999
Q ss_pred HHHHHHHhcccC--------------CccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC---
Q 022369 136 VRFSEAWNGRLG--------------PLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS--- 198 (298)
Q Consensus 136 ~~~~~~~~~~~g--------------~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~--- 198 (298)
+.+++-|-++.- .+|.++--|.....+.+.+... .-+..+++-+.+...++-.+.++-.+++
T Consensus 467 dAlIewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~ags-raE~~~rilLw~V~Rliggl~~~~s~r~v~~ 545 (866)
T COG4982 467 DALIEWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGS-RAEFAMRILLWNVLRLIGGLKKQGSSRGVDT 545 (866)
T ss_pred HHHHHHhccccccccCCcceecccccCcceeeecccCCccCccccCCc-hHHHHHHHHHHHHHHHHHHhhhhccccCccc
Confidence 999988765321 3677887777766565554432 3344556666666666665554433321
Q ss_pred CCeEEEEcCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccc-cCcc
Q 022369 199 PSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVS-TNVA 274 (298)
Q Consensus 199 ~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~-T~~~ 274 (298)
+-++|.-.|.. +.-+.+-..|+-+|++++.+..-+..|-.=...+.+..-.-|++. |.++
T Consensus 546 R~hVVLPgSPN----------------rG~FGgDGaYgEsK~aldav~~RW~sEs~Wa~~vsl~~A~IGWtrGTGLM 606 (866)
T COG4982 546 RLHVVLPGSPN----------------RGMFGGDGAYGESKLALDAVVNRWHSESSWAARVSLAHALIGWTRGTGLM 606 (866)
T ss_pred ceEEEecCCCC----------------CCccCCCcchhhHHHHHHHHHHHhhccchhhHHHHHhhhheeeecccccc
Confidence 24566666642 222355678999999999999888777410123444444567774 3443
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-07 Score=78.37 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=67.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++++++|+||++++|+.+++.|+++|++|++++|+.++++++.+++.+.. ......+|..+.+++.+.++
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~- 96 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARF-------GEGVGAVETSDDAARAAAIK- 96 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhc-------CCcEEEeeCCCHHHHHHHHh-
Confidence 5678999999999999999999999999999999999999988887775432 23355678888888766654
Q ss_pred HhcccCCccEEEEccCCC
Q 022369 142 WNGRLGPLHVLINNAGIF 159 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~ 159 (298)
+.|++|++....
T Consensus 97 ------~~diVi~at~~g 108 (194)
T cd01078 97 ------GADVVFAAGAAG 108 (194)
T ss_pred ------cCCEEEECCCCC
Confidence 578898876543
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.2e-08 Score=82.81 Aligned_cols=100 Identities=15% Similarity=0.207 Sum_probs=69.5
Q ss_pred CEEEEeCCCCc-hHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSG-IGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~G-IG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+-.||+.|+| ||.++|++|+++|++|++++|+... . .. . ...+.++.++ .. +++.+.+.+
T Consensus 16 ~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~-~-------~~-~----~~~v~~i~v~--s~---~~m~~~l~~ 77 (229)
T PRK06732 16 SVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAV-K-------PE-P----HPNLSIIEIE--NV---DDLLETLEP 77 (229)
T ss_pred CceeecCccchHHHHHHHHHHHhCCCEEEEEECcccc-c-------CC-C----CCCeEEEEEe--cH---HHHHHHHHH
Confidence 46788988876 9999999999999999999876421 0 00 0 0134555532 22 223333333
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHH
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAP 183 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~ 183 (298)
.++++|++|||||+....+....+.+++.+.+++|.+..
T Consensus 78 ~~~~~DivIh~AAvsd~~~~~~~~~~~~~~~~~v~~~~~ 116 (229)
T PRK06732 78 LVKDHDVLIHSMAVSDYTPVYMTDLEEVSASDNLNEFLT 116 (229)
T ss_pred HhcCCCEEEeCCccCCceehhhhhhhhhhhhhhhhhhhc
Confidence 345799999999997656666778899999999987655
|
|
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-07 Score=92.49 Aligned_cols=165 Identities=16% Similarity=0.216 Sum_probs=130.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHH---HHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAAN---ELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..|..+|+||-+|.|+++|..|..+|+ ++++++|+--+.- ..++.+++ .|..+.+--.|++..+..++++
T Consensus 1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~------~GVqV~vsT~nitt~~ga~~Li 1840 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRR------RGVQVQVSTSNITTAEGARGLI 1840 (2376)
T ss_pred ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHh------cCeEEEEecccchhhhhHHHHH
Confidence 358899999999999999999999999 7889998743322 23334443 2457777778999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++..+ .|.+..++|-|.+...+.+++.+.++|++.-+..+.|+.++-+.--..-..- ..+|..||+..-.+.
T Consensus 1841 ~~s~k-l~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~L--dyFv~FSSvscGRGN----- 1912 (2376)
T KOG1202|consen 1841 EESNK-LGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPEL--DYFVVFSSVSCGRGN----- 1912 (2376)
T ss_pred HHhhh-cccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCccc--ceEEEEEeecccCCC-----
Confidence 88654 4889999999999999999999999999999999999999877654433221 378888887644444
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHH
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKR 252 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e 252 (298)
.++..|+-+..+++-+++.-+.+
T Consensus 1913 ----------~GQtNYG~aNS~MERiceqRr~~ 1935 (2376)
T KOG1202|consen 1913 ----------AGQTNYGLANSAMERICEQRRHE 1935 (2376)
T ss_pred ----------CcccccchhhHHHHHHHHHhhhc
Confidence 56677999999999998875544
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.7e-08 Score=88.61 Aligned_cols=108 Identities=11% Similarity=0.173 Sum_probs=74.7
Q ss_pred CCCCCEEEEeCC---------------CCc-hHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEE
Q 022369 62 PVNDLTCIVTGS---------------TSG-IGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125 (298)
Q Consensus 62 ~~~~k~vlITGa---------------s~G-IG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (298)
+++||.+||||| ||| +|.++|++|+++|++|++++++.... .+ . ...
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~----------~~-----~--~~~ 244 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL----------TP-----P--GVK 244 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC----------CC-----C--CcE
Confidence 478999999999 677 99999999999999999988764321 01 1 124
Q ss_pred EcCCCCHHHH-HHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhH---HHHHhhhchHHHHHHHHH
Q 022369 126 ELDLLSLDSV-VRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGY---EEHMQVNHLAPALLSILL 190 (298)
Q Consensus 126 ~~D~s~~~~v-~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~---~~~~~vN~~~~~~l~~~~ 190 (298)
.+|+++.+++ +++.++. ++++|++|||||+....+.... ...+ ++.+.+|+.-+--+.+.+
T Consensus 245 ~~~v~~~~~~~~~~~~~~---~~~~D~~i~~Aavsd~~~~~~~-~~Ki~~~~~~~~l~L~~~pdil~~l 309 (390)
T TIGR00521 245 SIKVSTAEEMLEAALNEL---AKDFDIFISAAAVADFKPKTVF-EGKIKKQGEELSLKLVKNPDIIAEV 309 (390)
T ss_pred EEEeccHHHHHHHHHHhh---cccCCEEEEccccccccccccc-cccccccCCceeEEEEeCcHHHHHH
Confidence 6899999988 5555443 4689999999999765554321 1111 223456666655555544
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-07 Score=88.75 Aligned_cols=128 Identities=16% Similarity=0.056 Sum_probs=86.9
Q ss_pred CCEEE----EeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 65 DLTCI----VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 65 ~k~vl----ITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
|..+| |+||++|+|.++++.|...|+.|+.+.+..++.... ....+..+.+|.+..+..
T Consensus 34 ~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~~~~------------~~~~~~~~~~d~~~~~~~----- 96 (450)
T PRK08261 34 GQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLTWAAG------------WGDRFGALVFDATGITDP----- 96 (450)
T ss_pred CCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCccccccccC------------cCCcccEEEEECCCCCCH-----
Confidence 34555 888899999999999999999999876654311000 001222222333322221
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++ +.+.+.+.+.+++.|.+ .|+||+++|..+..+
T Consensus 97 -----------------------------~~--------l~~~~~~~~~~l~~l~~--~griv~i~s~~~~~~------- 130 (450)
T PRK08261 97 -----------------------------AD--------LKALYEFFHPVLRSLAP--CGRVVVLGRPPEAAA------- 130 (450)
T ss_pred -----------------------------HH--------HHHHHHHHHHHHHhccC--CCEEEEEccccccCC-------
Confidence 11 12344667777887754 579999999764322
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGI 268 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~ 268 (298)
...|+++|+++.+|+++++.|+ . .+|++++|.|+.
T Consensus 131 -----------~~~~~~akaal~gl~rsla~E~-~-~gi~v~~i~~~~ 165 (450)
T PRK08261 131 -----------DPAAAAAQRALEGFTRSLGKEL-R-RGATAQLVYVAP 165 (450)
T ss_pred -----------chHHHHHHHHHHHHHHHHHHHh-h-cCCEEEEEecCC
Confidence 2349999999999999999999 3 689999999986
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.8e-07 Score=76.02 Aligned_cols=166 Identities=19% Similarity=0.214 Sum_probs=100.8
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccC
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLG 147 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g 147 (298)
++|||||+-||.+++.+|.+.|+.|+++.|++.+.+..... .+. ..+.+ ++....
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~------------~v~-------~~~~~----~~~~~~-- 55 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHP------------NVT-------LWEGL----ADALTL-- 55 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCc------------ccc-------ccchh----hhcccC--
Confidence 58999999999999999999999999999998766544211 111 11111 121111
Q ss_pred CccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCC-eEEEEcCCccccCCCCcccccccccc
Q 022369 148 PLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPS-RIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 148 ~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g-~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
++|++||-||...... ..+.+.=+.+++ +-+..|+.+.....+.+.. ++..-+|..|+.+.. +.
T Consensus 56 ~~DavINLAG~~I~~r--rWt~~~K~~i~~----SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~---------~~ 120 (297)
T COG1090 56 GIDAVINLAGEPIAER--RWTEKQKEEIRQ----SRINTTEKLVELIAASETKPKVLISASAVGYYGHS---------GD 120 (297)
T ss_pred CCCEEEECCCCccccc--cCCHHHHHHHHH----HHhHHHHHHHHHHHhccCCCcEEEecceEEEecCC---------Cc
Confidence 6999999999754322 134444444444 5666777777777654333 344444556666642 11
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcC--CCCCcEEEEeeCCccccCccC
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLP--AESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~--~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
..+..... ...-++..+++.+..|.. ...|+||..+.-|.|-.+-.-
T Consensus 121 ~~~tE~~~--~g~~Fla~lc~~WE~~a~~a~~~gtRvvllRtGvVLs~~GG 169 (297)
T COG1090 121 RVVTEESP--PGDDFLAQLCQDWEEEALQAQQLGTRVVLLRTGVVLSPDGG 169 (297)
T ss_pred eeeecCCC--CCCChHHHHHHHHHHHHhhhhhcCceEEEEEEEEEecCCCc
Confidence 11111111 123345566676655542 446899999999998765443
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6e-07 Score=83.48 Aligned_cols=199 Identities=13% Similarity=0.168 Sum_probs=120.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcC--C-EEEEEEcCc---hH--------HHHHHHHHHHhhcCCCCCccEEEEEcC
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESG--A-HVVMAVRNL---KA--------ANELIQKWQEEWSGKGLPLNIEAMELD 128 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G--~-~Vil~~r~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D 128 (298)
++||+++||||+|.+|+-+..+|++.- . ++.+.-|.. +. .+.+.+.+.+..++ .-.++..+..|
T Consensus 10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~--~l~Kv~pi~GD 87 (467)
T KOG1221|consen 10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPE--ALEKVVPIAGD 87 (467)
T ss_pred hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCcc--ceecceecccc
Confidence 568999999999999999999998753 3 555554421 11 11222233333222 12478889999
Q ss_pred CCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCC
Q 022369 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSV 208 (298)
Q Consensus 129 ~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~ 208 (298)
+++++---+.-+.. ....++|++||+|+.-.. .|.++..+.+|.+|+.++.+.+.... +- -..|.+|+.
T Consensus 88 i~~~~LGis~~D~~-~l~~eV~ivih~AAtvrF-------de~l~~al~iNt~Gt~~~l~lak~~~-~l--~~~vhVSTA 156 (467)
T KOG1221|consen 88 ISEPDLGISESDLR-TLADEVNIVIHSAATVRF-------DEPLDVALGINTRGTRNVLQLAKEMV-KL--KALVHVSTA 156 (467)
T ss_pred ccCcccCCChHHHH-HHHhcCCEEEEeeeeecc-------chhhhhhhhhhhHhHHHHHHHHHHhh-hh--heEEEeehh
Confidence 98865211111110 112379999999986432 25677889999999999999776643 32 377778876
Q ss_pred ccccCCCCccc-----------c------------ccc-----ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcE
Q 022369 209 MHYVGFVDTED-----------M------------NVV-----SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGIN 260 (298)
Q Consensus 209 ~~~~~~~~~~~-----------~------------~~~-----~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~ 260 (298)
.... ...... . ..+ .-...+ ...|.-+|+-.+.+... ...+..
T Consensus 157 y~n~-~~~~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~--PNTYtfTKal~E~~i~~------~~~~lP 227 (467)
T KOG1221|consen 157 YSNC-NVGHIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGW--PNTYTFTKALAEMVIQK------EAENLP 227 (467)
T ss_pred heec-ccccccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCC--CCceeehHhhHHHHHHh------hccCCC
Confidence 5441 111000 0 000 001112 23477777655544333 335788
Q ss_pred EEEeeCCccccCccCCchHHHHH
Q 022369 261 VVCVSPGIVSTNVARDLPKIVQA 283 (298)
Q Consensus 261 v~~v~Pg~v~T~~~~~~~~~~~~ 283 (298)
+..+.|..|-+...+.++.|.+.
T Consensus 228 ivIiRPsiI~st~~EP~pGWidn 250 (467)
T KOG1221|consen 228 LVIIRPSIITSTYKEPFPGWIDN 250 (467)
T ss_pred eEEEcCCceeccccCCCCCcccc
Confidence 89999999988887777766554
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.2e-06 Score=70.85 Aligned_cols=75 Identities=25% Similarity=0.287 Sum_probs=58.3
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccC
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLG 147 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g 147 (298)
++||||+|.+|+.+++.|++.|++|.++.|+..+ ...++++.. .++++.+|+.|++++.++++
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~--~~~~~l~~~--------g~~vv~~d~~~~~~l~~al~------- 63 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSS--DRAQQLQAL--------GAEVVEADYDDPESLVAALK------- 63 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHH--HHHHHHHHT--------TTEEEES-TT-HHHHHHHHT-------
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccch--hhhhhhhcc--------cceEeecccCCHHHHHHHHc-------
Confidence 6899999999999999999999999999999732 223334332 34667999999998877766
Q ss_pred CccEEEEccCCC
Q 022369 148 PLHVLINNAGIF 159 (298)
Q Consensus 148 ~idilVnnag~~ 159 (298)
.+|.++++.+..
T Consensus 64 g~d~v~~~~~~~ 75 (233)
T PF05368_consen 64 GVDAVFSVTPPS 75 (233)
T ss_dssp TCSEEEEESSCS
T ss_pred CCceEEeecCcc
Confidence 689999888864
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.5e-06 Score=73.42 Aligned_cols=189 Identities=16% Similarity=0.064 Sum_probs=121.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHH-HHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELI-QKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|++||||=++-=|..+|..|+.+|+.|.-+-|+....+... +.+- ..+....+........|++|...+.+++..+
T Consensus 28 rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY-~nP~~h~~~~mkLHYgDmTDss~L~k~I~~i- 105 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLY-SNPHTHNGASMKLHYGDMTDSSCLIKLISTI- 105 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhh-cCchhcccceeEEeeccccchHHHHHHHhcc-
Confidence 369999999999999999999999999998877655443322 2221 1122233467888889999999999999987
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
.++=+.|-|..++.. .+-|--+-.-++...|+..+..++-.+-...+ -++ +-.|..-+.+...... -
T Consensus 106 ----kPtEiYnLaAQSHVk----vSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~-Vrf-YQAstSElyGkv~e~P---Q 172 (376)
T KOG1372|consen 106 ----KPTEVYNLAAQSHVK----VSFDLPEYTAEVDAVGTLRLLDAIRACRLTEK-VRF-YQASTSELYGKVQEIP---Q 172 (376)
T ss_pred ----CchhhhhhhhhcceE----EEeecccceeeccchhhhhHHHHHHhcCcccc-eeE-EecccHhhcccccCCC---c
Confidence 456666777766533 22233344566788899999888876654433 233 3344333444222111 0
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcC--CCCCcEEEEeeCCc
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLP--AESGINVVCVSPGI 268 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~--~~~gI~v~~v~Pg~ 268 (298)
+...|+-+.++|+++|.+-.-.+-..+..+. +-.||-+|.=+|--
T Consensus 173 sE~TPFyPRSPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPRR 219 (376)
T KOG1372|consen 173 SETTPFYPRSPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPRR 219 (376)
T ss_pred ccCCCCCCCChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCcc
Confidence 2445677889999999875433333322221 45678887777643
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.9e-06 Score=77.60 Aligned_cols=77 Identities=26% Similarity=0.475 Sum_probs=66.7
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcC-CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESG-AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G-~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+.+||.|| |++|+.+|..|+++| .+|.++||+.+++.++.+... .++..+++|+.|.+++.+++++
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~---------~~v~~~~vD~~d~~al~~li~~--- 68 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG---------GKVEALQVDAADVDALVALIKD--- 68 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc---------ccceeEEecccChHHHHHHHhc---
Confidence 56889999 999999999999999 799999999999988866643 2789999999999998888774
Q ss_pred ccCCccEEEEccCCC
Q 022369 145 RLGPLHVLINNAGIF 159 (298)
Q Consensus 145 ~~g~idilVnnag~~ 159 (298)
.|++||++...
T Consensus 69 ----~d~VIn~~p~~ 79 (389)
T COG1748 69 ----FDLVINAAPPF 79 (389)
T ss_pred ----CCEEEEeCCch
Confidence 39999998864
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.5e-06 Score=78.98 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=60.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc-hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL-KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|.++|+|+++ +|+++|+.|+++|++|++++++. +.+++..+++.+. .+.++..|..+.
T Consensus 2 ~~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~--------~~~~~~~~~~~~-------- 64 (450)
T PRK14106 2 ELKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL--------GIELVLGEYPEE-------- 64 (450)
T ss_pred CcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc--------CCEEEeCCcchh--------
Confidence 46789999999888 99999999999999999999985 4454444444331 355777888761
Q ss_pred HHhcccCCccEEEEccCCCCC
Q 022369 141 AWNGRLGPLHVLINNAGIFSI 161 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~ 161 (298)
..+..|++|+++|+...
T Consensus 65 ----~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 65 ----FLEGVDLVVVSPGVPLD 81 (450)
T ss_pred ----HhhcCCEEEECCCCCCC
Confidence 13579999999998543
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.1e-05 Score=71.08 Aligned_cols=176 Identities=18% Similarity=0.147 Sum_probs=106.5
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
....+-.+|+|+||+|++|+-+++.|.++|+.|..+-|+.++.+.....-.. ......+..|...+.++...+
T Consensus 74 ~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~-------d~~~~~v~~~~~~~~d~~~~~ 146 (411)
T KOG1203|consen 74 NNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFV-------DLGLQNVEADVVTAIDILKKL 146 (411)
T ss_pred CCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhccccc-------ccccceeeeccccccchhhhh
Confidence 3445567899999999999999999999999999999998887777651000 113444455555544443333
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
.+.... ..++++-++|..... + +...-..+.+.|+.++..++... +-.|+|.++|+.+....
T Consensus 147 ~~~~~~--~~~~v~~~~ggrp~~--e-----d~~~p~~VD~~g~knlvdA~~~a----Gvk~~vlv~si~~~~~~----- 208 (411)
T KOG1203|consen 147 VEAVPK--GVVIVIKGAGGRPEE--E-----DIVTPEKVDYEGTKNLVDACKKA----GVKRVVLVGSIGGTKFN----- 208 (411)
T ss_pred hhhccc--cceeEEecccCCCCc--c-----cCCCcceecHHHHHHHHHHHHHh----CCceEEEEEeecCcccC-----
Confidence 322211 356677777654321 1 22233456778888888887443 34499999987643322
Q ss_pred ccccccccCCCCcccchhhH-HHHHHHH-HHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 220 MNVVSGRRKYTSLMGYSGSK-LAQIKFS-SILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asK-aa~~~l~-~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
.. |.... .+...-. +....++ +..|+.-..|.||....+..
T Consensus 209 ----------~~---~~~~~~~~~~~~~k~~~e~~~-~~Sgl~ytiIR~g~~~~~~~ 251 (411)
T KOG1203|consen 209 ----------QP---PNILLLNGLVLKAKLKAEKFL-QDSGLPYTIIRPGGLEQDTG 251 (411)
T ss_pred ----------CC---chhhhhhhhhhHHHHhHHHHH-HhcCCCcEEEeccccccCCC
Confidence 11 22222 1111111 1223344 56788999999998866543
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.4e-05 Score=62.88 Aligned_cols=79 Identities=25% Similarity=0.349 Sum_probs=59.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCE-EEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAH-VVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~-Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.+++++.++|.|+ ||.|+++++.|++.|++ |.++.|+.++++++.+++.. ..+.++.. .+.. +..
T Consensus 8 ~~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~--------~~~~~~~~--~~~~---~~~ 73 (135)
T PF01488_consen 8 GDLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGG--------VNIEAIPL--EDLE---EAL 73 (135)
T ss_dssp STGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTG--------CSEEEEEG--GGHC---HHH
T ss_pred CCcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCc--------cccceeeH--HHHH---HHH
Confidence 3788999999998 89999999999999995 99999999999999888721 23445443 2222 222
Q ss_pred HHHhcccCCccEEEEccCCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFS 160 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~ 160 (298)
.+.|++||+.+...
T Consensus 74 -------~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 74 -------QEADIVINATPSGM 87 (135)
T ss_dssp -------HTESEEEE-SSTTS
T ss_pred -------hhCCeEEEecCCCC
Confidence 26899999988754
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.2e-05 Score=68.10 Aligned_cols=84 Identities=20% Similarity=0.300 Sum_probs=71.6
Q ss_pred EEEEeCCCCchHHHHHHHHHH----cCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAE----SGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~----~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.++|-|||+--|..++.++.+ .|..+.+.+||++++++..+.+.+..+.. ....+ .+.||.+|++++.+++++
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~-ls~~~-i~i~D~~n~~Sl~emak~- 83 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTD-LSSSV-ILIADSANEASLDEMAKQ- 83 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCC-cccce-EEEecCCCHHHHHHHHhh-
Confidence 489999999999999999999 78899999999999999999987754332 22344 888999999999999886
Q ss_pred hcccCCccEEEEccCCC
Q 022369 143 NGRLGPLHVLINNAGIF 159 (298)
Q Consensus 143 ~~~~g~idilVnnag~~ 159 (298)
-.++|||+|-.
T Consensus 84 ------~~vivN~vGPy 94 (423)
T KOG2733|consen 84 ------ARVIVNCVGPY 94 (423)
T ss_pred ------hEEEEeccccc
Confidence 46899999954
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.2e-06 Score=75.66 Aligned_cols=76 Identities=34% Similarity=0.461 Sum_probs=59.7
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 68 CIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|+|-|| |.+|+.+++.|++++- +|++++|+.++++++.+++. +.++..+++|+.|.+++.++++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~--------~~~~~~~~~d~~~~~~l~~~~~----- 66 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLL--------GDRVEAVQVDVNDPESLAELLR----- 66 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--T--------TTTEEEEE--TTTHHHHHHHHT-----
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhcc--------ccceeEEEEecCCHHHHHHHHh-----
Confidence 689999 9999999999999974 89999999999998877651 2489999999999999887766
Q ss_pred cCCccEEEEccCCC
Q 022369 146 LGPLHVLINNAGIF 159 (298)
Q Consensus 146 ~g~idilVnnag~~ 159 (298)
+-|++||++|..
T Consensus 67 --~~dvVin~~gp~ 78 (386)
T PF03435_consen 67 --GCDVVINCAGPF 78 (386)
T ss_dssp --TSSEEEE-SSGG
T ss_pred --cCCEEEECCccc
Confidence 359999999964
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.2e-05 Score=65.42 Aligned_cols=131 Identities=21% Similarity=0.150 Sum_probs=90.4
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
.+||||||+.+|.+++++|.++|.+|.+..|+.++..... ..+.+...|+.++..+...++
T Consensus 2 ~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-------------~~v~~~~~d~~~~~~l~~a~~------ 62 (275)
T COG0702 2 KILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-------------GGVEVVLGDLRDPKSLVAGAK------ 62 (275)
T ss_pred eEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-------------CCcEEEEeccCCHhHHHHHhc------
Confidence 5899999999999999999999999999999998887764 168899999999998877766
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
.+|.+++..+... ... ..............+..- .+..+++.+|...+..
T Consensus 63 -G~~~~~~i~~~~~-~~~---------~~~~~~~~~~~~~a~~a~-----~~~~~~~~~s~~~~~~-------------- 112 (275)
T COG0702 63 -GVDGVLLISGLLD-GSD---------AFRAVQVTAVVRAAEAAG-----AGVKHGVSLSVLGADA-------------- 112 (275)
T ss_pred -cccEEEEEecccc-ccc---------chhHHHHHHHHHHHHHhc-----CCceEEEEeccCCCCC--------------
Confidence 5777777777543 111 111222333334444332 1234677777764221
Q ss_pred cCCCCcccchhhHHHHHHHHHHH
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSIL 249 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l 249 (298)
.....|..+|...+...++.
T Consensus 113 ---~~~~~~~~~~~~~e~~l~~s 132 (275)
T COG0702 113 ---ASPSALARAKAAVEAALRSS 132 (275)
T ss_pred ---CCccHHHHHHHHHHHHHHhc
Confidence 23355888888877665553
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00021 Score=58.20 Aligned_cols=159 Identities=15% Similarity=0.131 Sum_probs=104.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
.+-|.|||+-.|..++++..++|+.|+.+.||+.++... ..+..++.|+.|++++.+.+.
T Consensus 2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~--------------~~~~i~q~Difd~~~~a~~l~------ 61 (211)
T COG2910 2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR--------------QGVTILQKDIFDLTSLASDLA------ 61 (211)
T ss_pred eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc--------------ccceeecccccChhhhHhhhc------
Confidence 467889999999999999999999999999998887664 156788999999998754443
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
..|++|..-|.....+. +. +..-.++++..++..+..|++.|....++.-.++....+.
T Consensus 62 -g~DaVIsA~~~~~~~~~--------~~--------~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~---- 120 (211)
T COG2910 62 -GHDAVISAFGAGASDND--------EL--------HSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDT---- 120 (211)
T ss_pred -CCceEEEeccCCCCChh--------HH--------HHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecC----
Confidence 68999998887542211 10 1112455566666667779999998766554333111111
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
..+|. .-|..+++.- -+-+.|..|- ++..+-|+|....-|
T Consensus 121 p~fP~-ey~~~A~~~a-e~L~~Lr~~~----~l~WTfvSPaa~f~P 160 (211)
T COG2910 121 PDFPA-EYKPEALAQA-EFLDSLRAEK----SLDWTFVSPAAFFEP 160 (211)
T ss_pred CCCch-hHHHHHHHHH-HHHHHHhhcc----CcceEEeCcHHhcCC
Confidence 11111 1134444333 3335555543 488888998877666
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.2e-05 Score=69.70 Aligned_cols=155 Identities=12% Similarity=0.136 Sum_probs=94.2
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.+.++|||++|.+|..+|..|+.++. .++++|+++ .+....++..... .. ...|+++.++..+.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~------~~--~i~~~~~~~d~~~~---- 83 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINT------PA--QVRGFLGDDQLGDA---- 83 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCc------Cc--eEEEEeCCCCHHHH----
Confidence 35799999999999999999997765 899999987 2222223332111 11 12233333333222
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCC-cc----ccCCCCc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSV-MH----YVGFVDT 217 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~-~~----~~~~~~~ 217 (298)
+.+.|++|+.||.... +.+.+++.+..|+-. ++.+.+.+.+.....||+++|- .- ...
T Consensus 84 ---l~~aDiVVitAG~~~~------~g~~R~dll~~N~~i----~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t---- 146 (323)
T PLN00106 84 ---LKGADLVIIPAGVPRK------PGMTRDDLFNINAGI----VKTLCEAVAKHCPNALVNIISNPVNSTVPIAA---- 146 (323)
T ss_pred ---cCCCCEEEEeCCCCCC------CCCCHHHHHHHHHHH----HHHHHHHHHHHCCCeEEEEeCCCccccHHHHH----
Confidence 2379999999998532 123467777777766 4455555555554555555553 21 110
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHc
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRL 253 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~ 253 (298)
.......++|....|+.++.-..-|...++.++
T Consensus 147 ---~~~~~~s~~p~~~viG~~~LDs~Rl~~~lA~~l 179 (323)
T PLN00106 147 ---EVLKKAGVYDPKKLFGVTTLDVVRANTFVAEKK 179 (323)
T ss_pred ---HHHHHcCCCCcceEEEEecchHHHHHHHHHHHh
Confidence 001123345677889999866666777888887
|
|
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00018 Score=64.00 Aligned_cols=150 Identities=15% Similarity=0.202 Sum_probs=87.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|++++|+|+++++|.++++.+...|++|++++++.++.+.+. ++ + .. ..+|..+.+..+++.+...
T Consensus 144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~-------g--~~---~~~~~~~~~~~~~~~~~~~ 210 (325)
T cd08253 144 AGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAELVR-QA-------G--AD---AVFNYRAEDLADRILAATA 210 (325)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-Hc-------C--CC---EEEeCCCcCHHHHHHHHcC
Confidence 4789999999999999999999999999999999877665542 21 1 11 1234455544444433322
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
. ..+|++++++|... .+.. +..+ +..|+++++++... ....... ...
T Consensus 211 ~--~~~d~vi~~~~~~~-----------~~~~---------------~~~l--~~~g~~v~~~~~~~-~~~~~~~--~~~ 257 (325)
T cd08253 211 G--QGVDVIIEVLANVN-----------LAKD---------------LDVL--APGGRIVVYGSGGL-RGTIPIN--PLM 257 (325)
T ss_pred C--CceEEEEECCchHH-----------HHHH---------------HHhh--CCCCEEEEEeecCC-cCCCChh--HHH
Confidence 2 36999999987310 1111 1112 23589999987431 0000000 001
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcE
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGIN 260 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~ 260 (298)
.....+.....|..+|.....+.+.+...+ ....++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~ 293 (325)
T cd08253 258 AKEASIRGVLLYTATPEERAAAAEAIAAGL-ADGALR 293 (325)
T ss_pred hcCceEEeeehhhcCHHHHHHHHHHHHHHH-HCCCcc
Confidence 111222333457777888877777776666 444444
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00011 Score=64.73 Aligned_cols=76 Identities=24% Similarity=0.401 Sum_probs=56.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.++|+++|+|+ +|+|++++..|++.|++|.+++|+.++.+++.+++... ..+.....| + .
T Consensus 115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~-------~~~~~~~~~-----~---~---- 174 (270)
T TIGR00507 115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRY-------GEIQAFSMD-----E---L---- 174 (270)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhc-------CceEEechh-----h---h----
Confidence 45789999999 59999999999999999999999999988887776431 012222211 1 0
Q ss_pred hcccCCccEEEEccCCCC
Q 022369 143 NGRLGPLHVLINNAGIFS 160 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~ 160 (298)
...+.|++||+.+...
T Consensus 175 --~~~~~DivInatp~gm 190 (270)
T TIGR00507 175 --PLHRVDLIINATSAGM 190 (270)
T ss_pred --cccCccEEEECCCCCC
Confidence 1236899999998753
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=5.4e-05 Score=68.43 Aligned_cols=74 Identities=23% Similarity=0.315 Sum_probs=55.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHc-C-CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAES-G-AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~-G-~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
++++|+++||||+|.||..+|++|+++ | .+|++++|+.++++++.+++.. .|+. ++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~---------------~~i~---~l~--- 210 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGG---------------GKIL---SLE--- 210 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcc---------------ccHH---hHH---
Confidence 678999999999999999999999864 6 4999999998888877655321 1221 122
Q ss_pred HHHhcccCCccEEEEccCCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFS 160 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~ 160 (298)
+.+.+.|++|+.++...
T Consensus 211 ----~~l~~aDiVv~~ts~~~ 227 (340)
T PRK14982 211 ----EALPEADIVVWVASMPK 227 (340)
T ss_pred ----HHHccCCEEEECCcCCc
Confidence 12346899999998753
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.8e-05 Score=66.65 Aligned_cols=86 Identities=19% Similarity=0.145 Sum_probs=53.2
Q ss_pred CCCCEEEEeCCC----------------CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEE
Q 022369 63 VNDLTCIVTGST----------------SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126 (298)
Q Consensus 63 ~~~k~vlITGas----------------~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (298)
++||.||||+|. |-||.++|++|+++|+.|+++++....... .. + .+..+..+.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~---~~----~---~~~~~~~V~ 70 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN---DI----N---NQLELHPFE 70 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCc---cc----C---CceeEEEEe
Confidence 468999999986 999999999999999999998864211000 00 0 011233333
Q ss_pred cCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCC
Q 022369 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGE 163 (298)
Q Consensus 127 ~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~ 163 (298)
.|....+ .+.++.+. .++|++||+|+++-..+
T Consensus 71 s~~d~~~----~l~~~~~~-~~~D~VIH~AAvsD~~~ 102 (229)
T PRK09620 71 GIIDLQD----KMKSIITH-EKVDAVIMAAAGSDWVV 102 (229)
T ss_pred cHHHHHH----HHHHHhcc-cCCCEEEECccccceec
Confidence 3222222 33333221 26899999999865433
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00018 Score=62.41 Aligned_cols=125 Identities=22% Similarity=0.239 Sum_probs=88.1
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+.++.|-++-|.|||+-+|+.++.+|++.|-.|++--|-.+.--.-.+-+.+ . .++.++..|+.|++++++++
T Consensus 56 RsS~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvmGd----L---GQvl~~~fd~~DedSIr~vv 128 (391)
T KOG2865|consen 56 RSSVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGD----L---GQVLFMKFDLRDEDSIRAVV 128 (391)
T ss_pred cccccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhheeeccc----c---cceeeeccCCCCHHHHHHHH
Confidence 4567788999999999999999999999999999987754322111111111 1 48999999999999999998
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMH 210 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~ 210 (298)
+. =+++||-.|.-... .+++ .-++|+.++=.+.+.+-. .+--++|.+|+..+
T Consensus 129 k~-------sNVVINLIGrd~eT--knf~------f~Dvn~~~aerlAricke----~GVerfIhvS~Lga 180 (391)
T KOG2865|consen 129 KH-------SNVVINLIGRDYET--KNFS------FEDVNVHIAERLARICKE----AGVERFIHVSCLGA 180 (391)
T ss_pred Hh-------CcEEEEeecccccc--CCcc------cccccchHHHHHHHHHHh----hChhheeehhhccc
Confidence 84 58999999975432 1122 124566666666665433 23348888888753
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.6e-05 Score=59.79 Aligned_cols=76 Identities=26% Similarity=0.469 Sum_probs=56.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcC-CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESG-AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G-~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++.++|+|+ +++|.++++.|++.| .+|++++|+.++.++..+++... .+..+..+.++.
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~------ 78 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGEL-----------GIAIAYLDLEEL------ 78 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhc-----------ccceeecchhhc------
Confidence 55788999998 799999999999996 78999999998888877665431 022333443322
Q ss_pred HhcccCCccEEEEccCCCC
Q 022369 142 WNGRLGPLHVLINNAGIFS 160 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~ 160 (298)
..+.|++|++.+...
T Consensus 79 ----~~~~Dvvi~~~~~~~ 93 (155)
T cd01065 79 ----LAEADLIINTTPVGM 93 (155)
T ss_pred ----cccCCEEEeCcCCCC
Confidence 247999999998654
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00015 Score=65.37 Aligned_cols=158 Identities=11% Similarity=0.041 Sum_probs=91.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+.+.++|||++|.+|..+|..|+.++ ..++++|++ ..+....++..... . ....+.+|+.+..+.+
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~--~~~g~a~Dl~~~~~------~--~~v~~~td~~~~~~~l-- 74 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV--GAPGVAADLSHIDT------P--AKVTGYADGELWEKAL-- 74 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC--CCcccccchhhcCc------C--ceEEEecCCCchHHHh--
Confidence 44689999999999999999999665 489999993 23332233333111 1 1233444433322222
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcccc-CCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYV-GFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~-~~~~~~~~ 220 (298)
.+.|++|+++|.... ..+.+.+.+..|+.. ++.+.+.|++.+..++|.++|--.-. ....+
T Consensus 75 -----~gaDvVVitaG~~~~------~~~tR~dll~~N~~i----~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~--- 136 (321)
T PTZ00325 75 -----RGADLVLICAGVPRK------PGMTRDDLFNTNAPI----VRDLVAAVASSAPKAIVGIVSNPVNSTVPIAA--- 136 (321)
T ss_pred -----CCCCEEEECCCCCCC------CCCCHHHHHHHHHHH----HHHHHHHHHHHCCCeEEEEecCcHHHHHHHHH---
Confidence 368999999998432 123466777777654 45555566666666788877742111 10000
Q ss_pred cccccccCCCCcccchhhHHHHHH--HHHHHHHHc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIK--FSSILQKRL 253 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~--l~~~l~~e~ 253 (298)
.......++|....|+.+ . ++. |-..++..+
T Consensus 137 ~~~~~~sg~p~~~viG~g-~-LDs~R~r~~la~~l 169 (321)
T PTZ00325 137 ETLKKAGVYDPRKLFGVT-T-LDVVRARKFVAEAL 169 (321)
T ss_pred hhhhhccCCChhheeech-h-HHHHHHHHHHHHHh
Confidence 000122345677778886 2 543 344455555
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00012 Score=64.91 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=43.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcC-CEEEEEEcCchHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESG-AHVVMAVRNLKAANELIQKWQ 110 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G-~~Vil~~r~~~~~~~~~~~~~ 110 (298)
++++|.++|+|+ ||+|+++++.|++.| .+|++++|+.++.+++.+++.
T Consensus 120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~ 168 (278)
T PRK00258 120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFG 168 (278)
T ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhh
Confidence 567899999997 899999999999999 699999999999888877764
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00049 Score=61.80 Aligned_cols=80 Identities=20% Similarity=0.235 Sum_probs=58.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+++++|+|+++++|.++++.+...|++|++++++.++.+.+. .+ + .. ...|..+.+..+.+.+...
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~-~~-------~--~~---~~~~~~~~~~~~~~~~~~~ 232 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAK-EL-------G--AD---YVIDYRKEDFVREVRELTG 232 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-Hc-------C--CC---eEEecCChHHHHHHHHHhC
Confidence 4689999999999999999999999999999999987665441 11 1 11 1246666666666555443
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
. +.+|++++++|.
T Consensus 233 ~--~~~d~~i~~~g~ 245 (342)
T cd08266 233 K--RGVDVVVEHVGA 245 (342)
T ss_pred C--CCCcEEEECCcH
Confidence 3 369999999983
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00012 Score=70.44 Aligned_cols=47 Identities=34% Similarity=0.507 Sum_probs=42.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~ 109 (298)
++++|+++|+|+ +|+|++++..|++.|++|++++|+.++.+++.+++
T Consensus 376 ~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l 422 (529)
T PLN02520 376 PLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKELADAV 422 (529)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence 567899999999 59999999999999999999999988888776654
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00013 Score=69.08 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=55.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||+++|||+++ +|+++|+.|++.|++|++.+++........+++.+. .+.+...+ +..++ .
T Consensus 2 ~~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~--------g~~~~~~~--~~~~~---~-- 65 (447)
T PRK02472 2 EYQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEE--------GIKVICGS--HPLEL---L-- 65 (447)
T ss_pred CcCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhc--------CCEEEeCC--CCHHH---h--
Confidence 35789999999986 999999999999999999998765544444445432 12222221 11111 1
Q ss_pred HhcccCCccEEEEccCCCCCC
Q 022369 142 WNGRLGPLHVLINNAGIFSIG 162 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~ 162 (298)
. ..+|++|+++|+....
T Consensus 66 --~--~~~d~vV~s~gi~~~~ 82 (447)
T PRK02472 66 --D--EDFDLMVKNPGIPYTN 82 (447)
T ss_pred --c--CcCCEEEECCCCCCCC
Confidence 1 1489999999986543
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0005 Score=57.79 Aligned_cols=162 Identities=19% Similarity=0.129 Sum_probs=98.1
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC---EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA---HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~---~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+.++|||+++-.|+++.+.+.+.|. +.++.+. -.+|+++.++.++++++.
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~s---------------------------kd~DLt~~a~t~~lF~~e 54 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGS---------------------------KDADLTNLADTRALFESE 54 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceEEecc---------------------------ccccccchHHHHHHHhcc
Confidence 6799999999999999999998875 4443332 258999999999999874
Q ss_pred hcccCCccEEEEccCCCCCCCCC--ccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC--Ccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQ--KFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV--DTE 218 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~--~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~--~~~ 218 (298)
++..+|+.|..... .+. ....+-|...+++| -+.++.+..+-.+ ++|+..|.+ +++.. ...
T Consensus 55 -----kPthVIhlAAmVGG-lf~N~~ynldF~r~Nl~in----dNVlhsa~e~gv~----K~vsclStC-IfPdkt~yPI 119 (315)
T KOG1431|consen 55 -----KPTHVIHLAAMVGG-LFHNNTYNLDFIRKNLQIN----DNVLHSAHEHGVK----KVVSCLSTC-IFPDKTSYPI 119 (315)
T ss_pred -----CCceeeehHhhhcc-hhhcCCCchHHHhhcceec----hhHHHHHHHhchh----hhhhhccee-ecCCCCCCCC
Confidence 57778887765321 111 22334444443333 3344444333222 455544432 22211 122
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
|..++-...+-|....|+-+|.-+.-..++.+.++ |-..+++.|-.+..|-
T Consensus 120 dEtmvh~gpphpsN~gYsyAKr~idv~n~aY~~qh----g~~~tsviPtNvfGph 170 (315)
T KOG1431|consen 120 DETMVHNGPPHPSNFGYSYAKRMIDVQNQAYRQQH----GRDYTSVIPTNVFGPH 170 (315)
T ss_pred CHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHh----CCceeeeccccccCCC
Confidence 22333334455666779999977766667777776 4556666666665553
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00011 Score=62.07 Aligned_cols=165 Identities=21% Similarity=0.196 Sum_probs=106.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHc-CC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAES-GA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~-G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
-..+||||+-+-+|..+|..|-.+ |. +||+.+.......-+ ..--++..|+-|...+++++-.
T Consensus 44 ~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~V~--------------~~GPyIy~DILD~K~L~eIVVn- 108 (366)
T KOG2774|consen 44 APRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPANVT--------------DVGPYIYLDILDQKSLEEIVVN- 108 (366)
T ss_pred CCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchhhc--------------ccCCchhhhhhccccHHHhhcc-
Confidence 457999999999999999999754 65 677766442221111 1223566888888877776543
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.+||.||+-..... ...+.+.--..++|+.|..++.+.+..+- --+|+-|.-|-+|.-
T Consensus 109 ----~RIdWL~HfSALLS-----AvGE~NVpLA~~VNI~GvHNil~vAa~~k------L~iFVPSTIGAFGPt------- 166 (366)
T KOG2774|consen 109 ----KRIDWLVHFSALLS-----AVGETNVPLALQVNIRGVHNILQVAAKHK------LKVFVPSTIGAFGPT------- 166 (366)
T ss_pred ----cccceeeeHHHHHH-----HhcccCCceeeeecchhhhHHHHHHHHcC------eeEeecccccccCCC-------
Confidence 38999999655322 11222333457899999999888765532 335555544444431
Q ss_pred cccccCCC------CcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEe-eCCcccc
Q 022369 223 VSGRRKYT------SLMGYSGSKLAQIKFSSILQKRLPAESGINVVCV-SPGIVST 271 (298)
Q Consensus 223 ~~~~~~~~------~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v-~Pg~v~T 271 (298)
+.++|.| +...|+.||-..+.+-+.+...+ |+.+-+. .||.+..
T Consensus 167 -SPRNPTPdltIQRPRTIYGVSKVHAEL~GEy~~hrF----g~dfr~~rfPg~is~ 217 (366)
T KOG2774|consen 167 -SPRNPTPDLTIQRPRTIYGVSKVHAELLGEYFNHRF----GVDFRSMRFPGIISA 217 (366)
T ss_pred -CCCCCCCCeeeecCceeechhHHHHHHHHHHHHhhc----CccceecccCccccc
Confidence 1233333 34569999999888888887766 6766666 4777744
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0015 Score=60.21 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=55.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+.++.++|.|+ |.+|+..++.+...|++|++++|++++++.+.+.+. . .+..+..+.+.+.+.+
T Consensus 165 l~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g----------~--~v~~~~~~~~~l~~~l--- 228 (370)
T TIGR00518 165 VEPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFG----------G--RIHTRYSNAYEIEDAV--- 228 (370)
T ss_pred CCCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcC----------c--eeEeccCCHHHHHHHH---
Confidence 45677899987 689999999999999999999999887765543321 1 1223455555544433
Q ss_pred hcccCCccEEEEccCCC
Q 022369 143 NGRLGPLHVLINNAGIF 159 (298)
Q Consensus 143 ~~~~g~idilVnnag~~ 159 (298)
...|++|+++++.
T Consensus 229 ----~~aDvVI~a~~~~ 241 (370)
T TIGR00518 229 ----KRADLLIGAVLIP 241 (370)
T ss_pred ----ccCCEEEEccccC
Confidence 3579999998763
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.002 Score=56.43 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=30.6
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN 98 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~ 98 (298)
..+.+.+|+|.|+ ||+|.++|+.|++.|. ++.++|.+
T Consensus 26 ~kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 26 QLFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred HHhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3456678888866 4999999999999995 89999865
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00031 Score=63.59 Aligned_cols=116 Identities=10% Similarity=0.051 Sum_probs=68.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHcC-------CEEEEEEcCch--HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESG-------AHVVMAVRNLK--AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G-------~~Vil~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
.++||||+|.+|.+++..|+..+ ..|+++++++. .++....++... ......|+....+..+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~---------~~~~~~~~~~~~~~~~ 74 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDC---------AFPLLKSVVATTDPEE 74 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhc---------cccccCCceecCCHHH
Confidence 48999999999999999999854 48999999653 233221122110 0011123332222222
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-C-CCeEEEEcCC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-S-PSRIINVNSV 208 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~-~g~Iv~isS~ 208 (298)
. +.+.|++|+.||..... ..+ -++.++.|+ .+.+.+.+.+.+. . .+.+|.+|..
T Consensus 75 ~-------l~~aDiVI~tAG~~~~~---~~~---R~~l~~~N~----~i~~~i~~~i~~~~~~~~iiivvsNP 130 (325)
T cd01336 75 A-------FKDVDVAILVGAMPRKE---GME---RKDLLKANV----KIFKEQGEALDKYAKKNVKVLVVGNP 130 (325)
T ss_pred H-------hCCCCEEEEeCCcCCCC---CCC---HHHHHHHHH----HHHHHHHHHHHHhCCCCeEEEEecCc
Confidence 2 23799999999985421 122 244555554 4566666666665 2 5677777763
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00063 Score=60.31 Aligned_cols=49 Identities=18% Similarity=0.269 Sum_probs=43.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQE 111 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~ 111 (298)
+.++|.++|.|+ ||-|++++..|++.|+ +|.+++|+.++.+++.+++..
T Consensus 124 ~~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~ 173 (283)
T PRK14027 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINN 173 (283)
T ss_pred CcCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh
Confidence 455789999998 8999999999999998 899999999999998887654
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.001 Score=59.19 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=37.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANE 104 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~ 104 (298)
++.|++++|.|. |++|+++|+.|...|++|++++|+.++.+.
T Consensus 148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~ 189 (287)
T TIGR02853 148 TIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLAR 189 (287)
T ss_pred CCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 678999999999 569999999999999999999999876544
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=61.52 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=55.1
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.++|||||++.++|..+|+.|.+.|++|++++.+........+.+. ....+...-.+++...+.+.++.+
T Consensus 4 ~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~~~~s~~~d----------~~~~~p~p~~d~~~~~~~L~~i~~ 73 (389)
T PRK06849 4 KKTVLITGARAPAALELARLFHNAGHTVILADSLKYPLSRFSRAVD----------GFYTIPSPRWDPDAYIQALLSIVQ 73 (389)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHhhh----------heEEeCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999998655443222221 222232223344444444444444
Q ss_pred ccCCccEEEEccC
Q 022369 145 RLGPLHVLINNAG 157 (298)
Q Consensus 145 ~~g~idilVnnag 157 (298)
+. ++|++|....
T Consensus 74 ~~-~id~vIP~~e 85 (389)
T PRK06849 74 RE-NIDLLIPTCE 85 (389)
T ss_pred Hc-CCCEEEECCh
Confidence 43 5899998765
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00099 Score=59.17 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=44.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHh
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEE 112 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~ 112 (298)
++++|.++|.|+ ||.|++++..|++.|+ +|++++|+.++.+.+.+++...
T Consensus 124 ~~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~ 174 (284)
T PRK12549 124 DASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNAR 174 (284)
T ss_pred CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhh
Confidence 456789999997 6799999999999998 8999999999999998887653
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0035 Score=56.30 Aligned_cols=115 Identities=11% Similarity=0.134 Sum_probs=74.8
Q ss_pred EEEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+.|.|+ |++|.++|..|+.+| .+|++++|++++++....++.......+ ....... .+.+++
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~--~~~~i~~---~~~~~l--------- 66 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLP--SPVKIKA---GDYSDC--------- 66 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccC--CCeEEEc---CCHHHh---------
Confidence 5788886 899999999999999 4899999999999988888876532111 1222221 222211
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCC
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSV 208 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~ 208 (298)
.+-|++|+++|.... + .++. .+.++.| ..+.+...+.+.+.. .+.|+++|..
T Consensus 67 --~~aDIVIitag~~~~-~--g~~R---~dll~~N----~~i~~~~~~~i~~~~~~~~vivvsNP 119 (306)
T cd05291 67 --KDADIVVITAGAPQK-P--GETR---LDLLEKN----AKIMKSIVPKIKASGFDGIFLVASNP 119 (306)
T ss_pred --CCCCEEEEccCCCCC-C--CCCH---HHHHHHH----HHHHHHHHHHHHHhCCCeEEEEecCh
Confidence 378999999998532 1 2222 2334444 445566666666543 5677777764
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00084 Score=59.57 Aligned_cols=48 Identities=23% Similarity=0.357 Sum_probs=42.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQ 110 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~ 110 (298)
++++|.++|.|+ ||.|++++..|++.|+ +|.++.|+.++.+++.+++.
T Consensus 122 ~~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~ 170 (282)
T TIGR01809 122 PLAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGV 170 (282)
T ss_pred ccCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhh
Confidence 356888999976 8999999999999997 79999999999998887764
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0011 Score=54.86 Aligned_cols=80 Identities=14% Similarity=0.243 Sum_probs=49.0
Q ss_pred CCCCEEEEeCC----------------CCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEE
Q 022369 63 VNDLTCIVTGS----------------TSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126 (298)
Q Consensus 63 ~~~k~vlITGa----------------s~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (298)
++||.||||+| ||-.|.++|++++.+|++|+++.... .+.. +..+..
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~-~~~~--------------p~~~~~-- 63 (185)
T PF04127_consen 1 LKGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS-SLPP--------------PPGVKV-- 63 (185)
T ss_dssp -TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT-S------------------TTEEE--
T ss_pred CCCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc-cccc--------------cccceE--
Confidence 46788888876 57799999999999999999998773 2111 013444
Q ss_pred cCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCC
Q 022369 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIG 162 (298)
Q Consensus 127 ~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~ 162 (298)
.++...++..+.+.+.. ..-|++|++|.++-..
T Consensus 64 i~v~sa~em~~~~~~~~---~~~Di~I~aAAVsDf~ 96 (185)
T PF04127_consen 64 IRVESAEEMLEAVKELL---PSADIIIMAAAVSDFR 96 (185)
T ss_dssp EE-SSHHHHHHHHHHHG---GGGSEEEE-SB--SEE
T ss_pred EEecchhhhhhhhcccc---CcceeEEEecchhhee
Confidence 34566666666555554 3459999999987543
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0044 Score=53.25 Aligned_cols=35 Identities=26% Similarity=0.383 Sum_probs=29.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN 98 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~ 98 (298)
+++.+|+|.|+ +|+|.++|+.|++.|. +++++|.+
T Consensus 9 L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 45677888876 5999999999999998 89999865
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.003 Score=70.72 Aligned_cols=185 Identities=11% Similarity=0.101 Sum_probs=115.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+.++.++|++.+++++.+++.+|.++|..|+++..-.. ....... ....+..+.+.-.|..++..+++.+
T Consensus 1753 ~~~~~~~v~~d~~~~~~~L~~~L~~~G~~v~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 1822 (2582)
T TIGR02813 1753 QSGANALVIDDDGHNAGVLAEKLIAAGWQVAVVRSPWV-VSHSASP---------LASAIASVTLGTIDDTSIEAVIKDI 1822 (2582)
T ss_pred ccCceeEEEcCCcchHHHHHHHHHhCCCeEEEeecccc-ccccccc---------cccccccccccccchHHHHHHHHhh
Confidence 34778888888999999999999999999988742211 0000000 0113334556666778888888888
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
....+.++.+|+-.+..... ....+.......-...+...|.+.|.+-+.+...+++.++.++...|-++..+.+.
T Consensus 1823 ~~~~~~~~g~i~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~f~~ak~~~~~l~~~~~~~~~~vsr~~G~~g~~~~~~--- 1898 (2582)
T TIGR02813 1823 EEKTAQIDGFIHLQPQHKSV-ADKVDAIELPEAAKQSLMLAFLFAKLLNVKLATNARASFVTVSRIDGGFGYSNGDA--- 1898 (2582)
T ss_pred hccccccceEEEeccccccc-cccccccccchhhHHHHHHHHHHHHhhchhhccCCCeEEEEEEecCCccccCCccc---
Confidence 88788999999877654210 00000001111112344557888888777766666788999998876665421000
Q ss_pred cccccCCCCc--ccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCc
Q 022369 223 VSGRRKYTSL--MGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGI 268 (298)
Q Consensus 223 ~~~~~~~~~~--~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~ 268 (298)
..+. ..-....+++.+|+|+++.|+ ....+|...+.|..
T Consensus 1899 ------~~~~~~~~~~~~~a~l~Gl~Ktl~~E~-P~~~~r~vDl~~~~ 1939 (2582)
T TIGR02813 1899 ------DSGTQQVKAELNQAALAGLTKTLNHEW-NAVFCRALDLAPKL 1939 (2582)
T ss_pred ------cccccccccchhhhhHHHHHHhHHHHC-CCCeEEEEeCCCCc
Confidence 0000 001235789999999999999 65566666776753
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0019 Score=58.72 Aligned_cols=82 Identities=15% Similarity=0.276 Sum_probs=57.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc---------------------hHHHHHHHHHHHhhcCCCCC
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL---------------------KAANELIQKWQEEWSGKGLP 119 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~---------------------~~~~~~~~~~~~~~~~~~~~ 119 (298)
.+++++|+|.|+ ||+|.++|+.|++.|. ++.++|++. .+.+.+.+.+++..+ .
T Consensus 21 ~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp----~ 95 (338)
T PRK12475 21 KIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINS----E 95 (338)
T ss_pred hhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCC----C
Confidence 466788999997 6899999999999998 899999863 355666666666543 3
Q ss_pred ccEEEEEcCCCCHHHHHHHHHHHhcccCCccEEEEcc
Q 022369 120 LNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNA 156 (298)
Q Consensus 120 ~~~~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnna 156 (298)
.++..+..|++. +.+++++ .+.|++|.+.
T Consensus 96 v~i~~~~~~~~~-~~~~~~~-------~~~DlVid~~ 124 (338)
T PRK12475 96 VEIVPVVTDVTV-EELEELV-------KEVDLIIDAT 124 (338)
T ss_pred cEEEEEeccCCH-HHHHHHh-------cCCCEEEEcC
Confidence 467777777763 3333332 2456666654
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0067 Score=54.18 Aligned_cols=43 Identities=23% Similarity=0.319 Sum_probs=37.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANE 104 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~ 104 (298)
.++.+++++|.|. |++|+.++..|.+.|++|.+++|+.++.+.
T Consensus 148 ~~l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~ 190 (296)
T PRK08306 148 ITIHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLAR 190 (296)
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 3567899999998 679999999999999999999999765443
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00026 Score=59.50 Aligned_cols=48 Identities=25% Similarity=0.311 Sum_probs=41.9
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQK 108 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~ 108 (298)
..+++||+++|+|.+ .+|..+|+.|.+.|++|++.+++++++++..++
T Consensus 23 ~~~l~gk~v~I~G~G-~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~ 70 (200)
T cd01075 23 TDSLEGKTVAVQGLG-KVGYKLAEHLLEEGAKLIVADINEEAVARAAEL 70 (200)
T ss_pred CCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 446889999999996 899999999999999999999998877776544
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0067 Score=48.00 Aligned_cols=115 Identities=14% Similarity=0.156 Sum_probs=75.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+.|.|++|.+|.++|..|+..+. +++++|+++++++..+.++........ ....... .++++
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~--~~~~i~~---~~~~~---------- 66 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLP--SPVRITS---GDYEA---------- 66 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGST--EEEEEEE---SSGGG----------
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcc--ccccccc---ccccc----------
Confidence 478999999999999999999875 899999999988888888776543221 1233333 22221
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcC
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNS 207 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS 207 (298)
+.+-|++|..||.... ...+ -.+.++.|. .+.+.+.+.+.+.. .+.++.++.
T Consensus 67 -~~~aDivvitag~~~~---~g~s---R~~ll~~N~----~i~~~~~~~i~~~~p~~~vivvtN 119 (141)
T PF00056_consen 67 -LKDADIVVITAGVPRK---PGMS---RLDLLEANA----KIVKEIAKKIAKYAPDAIVIVVTN 119 (141)
T ss_dssp -GTTESEEEETTSTSSS---TTSS---HHHHHHHHH----HHHHHHHHHHHHHSTTSEEEE-SS
T ss_pred -cccccEEEEecccccc---cccc---HHHHHHHhH----hHHHHHHHHHHHhCCccEEEEeCC
Confidence 2378999999998532 1122 334455554 45555555555543 466666655
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00063 Score=61.22 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=63.1
Q ss_pred CEEEEeCCCCchHHHHHHHHHH-c--CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAE-S--GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~-~--G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+.++|.||++++|.++|..++. . +..+++.+|++. .+...-++... . .......++-.+ +.+.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~----~--~~~~i~~~~~~d---~~~~---- 66 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHI----P--TAVKIKGFSGED---PTPA---- 66 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcC----C--CCceEEEeCCCC---HHHH----
Confidence 3589999999999999998855 2 457888898843 22111122210 0 011111122222 1111
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcC
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNS 207 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS 207 (298)
....|++|+++|...... . .-.+.+..|. .+++.+.+.|.+.+..++|.+.|
T Consensus 67 ---l~~~DiVIitaG~~~~~~---~---~R~dll~~N~----~i~~~ii~~i~~~~~~~ivivvs 118 (312)
T PRK05086 67 ---LEGADVVLISAGVARKPG---M---DRSDLFNVNA----GIVKNLVEKVAKTCPKACIGIIT 118 (312)
T ss_pred ---cCCCCEEEEcCCCCCCCC---C---CHHHHHHHHH----HHHHHHHHHHHHhCCCeEEEEcc
Confidence 135999999999864321 1 2334455554 44555566666655445555554
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0047 Score=59.04 Aligned_cols=113 Identities=18% Similarity=0.164 Sum_probs=71.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH---------
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSL--------- 132 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~--------- 132 (298)
...+.+|+|.|++ .+|+..+..+...|++|+++|+++++++...+ + ...++..|..+.
T Consensus 162 ~~pg~kVlViGaG-~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes-l-----------GA~~v~i~~~e~~~~~~gya~ 228 (509)
T PRK09424 162 KVPPAKVLVIGAG-VAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES-M-----------GAEFLELDFEEEGGSGDGYAK 228 (509)
T ss_pred CcCCCEEEEECCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c-----------CCeEEEeccccccccccchhh
Confidence 3457889999875 79999999999999999999999988776533 2 122222333221
Q ss_pred ----HHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCC
Q 022369 133 ----DSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSV 208 (298)
Q Consensus 133 ----~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~ 208 (298)
+..++..+.+.+..+..|++|+++|+..... +..+++..+..|+ .+|.||.++..
T Consensus 229 ~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~a-------------------P~lit~~~v~~mk--pGgvIVdvg~~ 287 (509)
T PRK09424 229 VMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPA-------------------PKLITAEMVASMK--PGSVIVDLAAE 287 (509)
T ss_pred hcchhHHHHHHHHHHhccCCCCEEEECCCCCcccC-------------------cchHHHHHHHhcC--CCCEEEEEccC
Confidence 1112222222333357999999999843211 1123455555665 36789998864
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0013 Score=59.67 Aligned_cols=80 Identities=14% Similarity=0.206 Sum_probs=54.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|.+++|+||++++|..+++.+...|++|+.++++.++.+.+.+.+. .. .+ .|..+.++..+.+.+..
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lG---------a~-~v--i~~~~~~~~~~~i~~~~ 218 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLG---------FD-DA--FNYKEEPDLDAALKRYF 218 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcC---------Cc-ee--EEcCCcccHHHHHHHhC
Confidence 47899999999999999998888889999999999877666643221 11 11 23222223333333332
Q ss_pred cccCCccEEEEccC
Q 022369 144 GRLGPLHVLINNAG 157 (298)
Q Consensus 144 ~~~g~idilVnnag 157 (298)
. +.+|+++++.|
T Consensus 219 ~--~gvd~v~d~~g 230 (338)
T cd08295 219 P--NGIDIYFDNVG 230 (338)
T ss_pred C--CCcEEEEECCC
Confidence 2 36999999877
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=62.81 Aligned_cols=46 Identities=28% Similarity=0.503 Sum_probs=40.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQK 108 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~ 108 (298)
++++++++|+|+ ||+|++++..|++.|++|++++|+.++.+++.++
T Consensus 329 ~~~~k~vlIiGa-GgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~ 374 (477)
T PRK09310 329 PLNNQHVAIVGA-GGAAKAIATTLARAGAELLIFNRTKAHAEALASR 374 (477)
T ss_pred CcCCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 467899999996 6999999999999999999999998887776554
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.012 Score=56.24 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=72.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCC-----------
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLL----------- 130 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s----------- 130 (298)
...+.+++|.|+ |.+|...+..+...|++|++++++.++++...+ + ...++..|..
T Consensus 161 ~vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-l-----------Ga~~v~v~~~e~g~~~~gYa~ 227 (511)
T TIGR00561 161 KVPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-M-----------GAEFLELDFKEEGGSGDGYAK 227 (511)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c-----------CCeEEecccccccccccccee
Confidence 445678999996 899999999999999999999999887664432 2 1233344432
Q ss_pred --CHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCC
Q 022369 131 --SLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSV 208 (298)
Q Consensus 131 --~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~ 208 (298)
..+..++..+.+.+...+.|++|+++-+..... +..+++..+..|+. ++.||.+++-
T Consensus 228 ~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~a-------------------P~Lit~emv~~MKp--GsvIVDlA~d 286 (511)
T TIGR00561 228 VMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPA-------------------PKLITEEMVDSMKA--GSVIVDLAAE 286 (511)
T ss_pred ecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCC-------------------CeeehHHHHhhCCC--CCEEEEeeeC
Confidence 123333334444444567999999995432111 11233444455654 4688888876
Q ss_pred cc
Q 022369 209 MH 210 (298)
Q Consensus 209 ~~ 210 (298)
.|
T Consensus 287 ~G 288 (511)
T TIGR00561 287 QG 288 (511)
T ss_pred CC
Confidence 43
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.013 Score=50.37 Aligned_cols=160 Identities=15% Similarity=0.244 Sum_probs=105.8
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
|.++||--|.+|.|..+++.+-..|+++|.+..+.++.+...+. -.-+..|.+.++-++++.+-...
T Consensus 147 GhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken-------------G~~h~I~y~~eD~v~~V~kiTng 213 (336)
T KOG1197|consen 147 GHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN-------------GAEHPIDYSTEDYVDEVKKITNG 213 (336)
T ss_pred CCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc-------------CCcceeeccchhHHHHHHhccCC
Confidence 78999999999999999999999999999999887777665433 11234677777765555443222
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
+ .+|++.-..|. +.+...+ ..++ ..|.+|...-..+..+...+.++....
T Consensus 214 K--GVd~vyDsvG~-----------dt~~~sl---------------~~Lk--~~G~mVSfG~asgl~~p~~l~~ls~k~ 263 (336)
T KOG1197|consen 214 K--GVDAVYDSVGK-----------DTFAKSL---------------AALK--PMGKMVSFGNASGLIDPIPLNQLSPKA 263 (336)
T ss_pred C--Cceeeeccccc-----------hhhHHHH---------------HHhc--cCceEEEeccccCCCCCeehhhcChhh
Confidence 2 58888777665 2232221 1222 357999888877777665544443322
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHc-CCCCCcEEEEeeCC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRL-PAESGINVVCVSPG 267 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~-~~~~gI~v~~v~Pg 267 (298)
-.--.|....|-....-+.+.+..+-.++ ...-+|+++.+.|-
T Consensus 264 l~lvrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~I~~~ypl 307 (336)
T KOG1197|consen 264 LQLVRPSLLGYIDGEVELVSYVARLFALVNSGHLKIHIDHVYPL 307 (336)
T ss_pred hhhccHhhhcccCCHHHHHHHHHHHHHHhhcCccceeeeeecch
Confidence 22334566778888777777666555554 24457888888774
|
|
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0022 Score=56.81 Aligned_cols=80 Identities=19% Similarity=0.287 Sum_probs=55.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++++++|+|+++++|.+++..+...|++|++++++.++.+.+ +++ + .. ...|..+.+...++.+..
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~-------g--~~---~~~~~~~~~~~~~~~~~~- 204 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEAC-RAL-------G--AD---VAINYRTEDFAEEVKEAT- 204 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHH-HHc-------C--CC---EEEeCCchhHHHHHHHHh-
Confidence 468999999999999999999999999999999987766554 222 1 11 123444444333333322
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
.. +.+|++++++|.
T Consensus 205 ~~-~~~d~vi~~~g~ 218 (323)
T cd05276 205 GG-RGVDVILDMVGG 218 (323)
T ss_pred CC-CCeEEEEECCch
Confidence 22 369999999884
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0051 Score=53.19 Aligned_cols=102 Identities=20% Similarity=0.157 Sum_probs=65.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+++++|+|+++ +|.++++.+...|.+|+.+++++++.+.+ +++ + .. . ..|..+.+....+. .
T Consensus 134 ~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-------g--~~-~--~~~~~~~~~~~~~~---~ 196 (271)
T cd05188 134 PGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELA-KEL-------G--AD-H--VIDYKEEDLEEELR---L 196 (271)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHh-------C--Cc-e--eccCCcCCHHHHHH---H
Confidence 468999999999 99999999989999999999987665544 221 0 01 1 12333333333333 2
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM 209 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~ 209 (298)
...+.+|++++++|.. ...+..+..|. ..|+++.++...
T Consensus 197 ~~~~~~d~vi~~~~~~-------------------------~~~~~~~~~l~--~~G~~v~~~~~~ 235 (271)
T cd05188 197 TGGGGADVVIDAVGGP-------------------------ETLAQALRLLR--PGGRIVVVGGTS 235 (271)
T ss_pred hcCCCCCEEEECCCCH-------------------------HHHHHHHHhcc--cCCEEEEEccCC
Confidence 2234799999998742 12233344443 368999988754
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0034 Score=52.82 Aligned_cols=83 Identities=14% Similarity=0.287 Sum_probs=56.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC-------------------chHHHHHHHHHHHhhcCCCCCcc
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN-------------------LKAANELIQKWQEEWSGKGLPLN 121 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 121 (298)
.+++++|+|.| .+|+|.++|+.|++.|. ++.++|++ ..+.+.+.+.+++..+. .+
T Consensus 18 kl~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~----v~ 92 (202)
T TIGR02356 18 RLLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSD----IQ 92 (202)
T ss_pred HhcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCC----CE
Confidence 46678899998 56999999999999998 89999877 34555666666654332 35
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhcccCCccEEEEccC
Q 022369 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG 157 (298)
Q Consensus 122 ~~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag 157 (298)
+..+..++.+ +.+.++ +.+.|++|.+..
T Consensus 93 i~~~~~~i~~-~~~~~~-------~~~~D~Vi~~~d 120 (202)
T TIGR02356 93 VTALKERVTA-ENLELL-------INNVDLVLDCTD 120 (202)
T ss_pred EEEehhcCCH-HHHHHH-------HhCCCEEEECCC
Confidence 6666555543 233322 235788888754
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0023 Score=57.84 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=68.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC-------EEEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHH--HH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA-------HVVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLD--SV 135 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~-------~Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~--~v 135 (298)
.+.||||+|.+|..+|..|+..|. .++++|+++ +.++.. ..|+.|.. ..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~--------------------~~Dl~d~~~~~~ 61 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGV--------------------VMELQDCAFPLL 61 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCcccee--------------------eeehhhhccccc
Confidence 489999999999999999998763 499999986 433333 33333331 00
Q ss_pred H--HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC--CCCeEEEEcC
Q 022369 136 V--RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG--SPSRIINVNS 207 (298)
Q Consensus 136 ~--~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~--~~g~Iv~isS 207 (298)
. .+.....+.+.+.|++|+.||.... + .++ -.+.+..| ..+.+.+.+.+.+. ..+.++++|.
T Consensus 62 ~~~~i~~~~~~~~~~aDiVVitAG~~~~-~--g~t---R~dll~~N----~~i~~~i~~~i~~~~~~~~iiivvsN 127 (323)
T cd00704 62 KGVVITTDPEEAFKDVDVAILVGAFPRK-P--GME---RADLLRKN----AKIFKEQGEALNKVAKPTVKVLVVGN 127 (323)
T ss_pred CCcEEecChHHHhCCCCEEEEeCCCCCC-c--CCc---HHHHHHHh----HHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 0 0001112223579999999998532 1 222 33344444 46777777777776 3566777764
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0031 Score=56.12 Aligned_cols=48 Identities=21% Similarity=0.233 Sum_probs=39.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc---hHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL---KAANELIQKWQ 110 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~---~~~~~~~~~~~ 110 (298)
++++|+++|.|+ ||-+++++..|+..|+ +|.+++|+. ++.+++.+++.
T Consensus 121 ~~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~ 172 (288)
T PRK12749 121 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVN 172 (288)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhh
Confidence 467899999997 6669999999999997 899999995 46777766654
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0023 Score=56.55 Aligned_cols=82 Identities=26% Similarity=0.333 Sum_probs=58.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.+.+|+.++|.|| ||-+++++..|++.|+ +|+++.|+.++.+++.+.+.+... .....+..+.+..+
T Consensus 122 ~~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~--------~~~~~~~~~~~~~~--- 189 (283)
T COG0169 122 VDVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGA--------AVEAAALADLEGLE--- 189 (283)
T ss_pred cccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccc--------cccccccccccccc---
Confidence 3456899999987 5899999999999996 899999999999999888865321 11112222222111
Q ss_pred HHHhcccCCccEEEEccCCCCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIG 162 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~ 162 (298)
..|++||+...+-..
T Consensus 190 --------~~dliINaTp~Gm~~ 204 (283)
T COG0169 190 --------EADLLINATPVGMAG 204 (283)
T ss_pred --------ccCEEEECCCCCCCC
Confidence 479999998765433
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0021 Score=57.92 Aligned_cols=80 Identities=16% Similarity=0.203 Sum_probs=53.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|.++||+||++++|..+++.+...|++|+.++++.++.+.+ +++ |... + .|..+.+...+.++...
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~-~~l---------Ga~~-v--i~~~~~~~~~~~~~~~~ 204 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL-KKL---------GFDV-A--FNYKTVKSLEETLKKAS 204 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc---------CCCE-E--EeccccccHHHHHHHhC
Confidence 478999999999999999888888899999999987776555 222 1111 1 22233223444444433
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
. +.+|+++.+.|.
T Consensus 205 ~--~gvdvv~d~~G~ 217 (325)
T TIGR02825 205 P--DGYDCYFDNVGG 217 (325)
T ss_pred C--CCeEEEEECCCH
Confidence 2 369999998873
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0016 Score=58.76 Aligned_cols=156 Identities=10% Similarity=-0.040 Sum_probs=96.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-------EEEEEEcCch--HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-------HVVMAVRNLK--AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-------~Vil~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
+.+.|+|++|.+|..+|..|+..|. .++++|.+++ +++..+.+++....... ..+.+. -.+.+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~--~~~~i~---~~~~~--- 74 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLL--AEIVIT---DDPNV--- 74 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhcccccc--CceEEe---cCcHH---
Confidence 4689999999999999999998876 7999999543 35555555544210000 011111 11111
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC--CCeEEEEcCCccccCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS--PSRIINVNSVMHYVGF 214 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~--~g~Iv~isS~~~~~~~ 214 (298)
.+.+-|++|.+||.... + .++ =.+.+..| ..+.+.+.+.+.+.. .+.++++|...=....
T Consensus 75 --------~~~daDivvitaG~~~k-~--g~t---R~dll~~N----~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~ 136 (322)
T cd01338 75 --------AFKDADWALLVGAKPRG-P--GME---RADLLKAN----GKIFTAQGKALNDVASRDVKVLVVGNPCNTNAL 136 (322)
T ss_pred --------HhCCCCEEEEeCCCCCC-C--CCc---HHHHHHHH----HHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHH
Confidence 12478999999998532 1 223 22344444 457777777777654 5777777753211110
Q ss_pred CCccccccccccc-CCCCcccchhhHHHHHHHHHHHHHHcC
Q 022369 215 VDTEDMNVVSGRR-KYTSLMGYSGSKLAQIKFSSILQKRLP 254 (298)
Q Consensus 215 ~~~~~~~~~~~~~-~~~~~~~Y~asKaa~~~l~~~l~~e~~ 254 (298)
.- .... .+|....|+.++.--.-|...++..+.
T Consensus 137 ~~-------~k~sg~~p~~~ViG~t~LDs~Rl~~~la~~lg 170 (322)
T cd01338 137 IA-------MKNAPDIPPDNFTAMTRLDHNRAKSQLAKKAG 170 (322)
T ss_pred HH-------HHHcCCCChHheEEehHHHHHHHHHHHHHHhC
Confidence 00 0112 257777899999988889889988873
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0021 Score=58.80 Aligned_cols=80 Identities=13% Similarity=0.178 Sum_probs=53.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|.+++|+||++++|...++.+...|++|+.++++.++.+.+.+++. ... + .|..+.++..+.+.+..
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lG---------a~~-v--i~~~~~~~~~~~i~~~~ 225 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLG---------FDE-A--FNYKEEPDLDAALKRYF 225 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcC---------CCE-E--EECCCcccHHHHHHHHC
Confidence 47899999999999999988888889999999998877665532321 111 1 23222223333333332
Q ss_pred cccCCccEEEEccC
Q 022369 144 GRLGPLHVLINNAG 157 (298)
Q Consensus 144 ~~~g~idilVnnag 157 (298)
. +.+|+++.+.|
T Consensus 226 ~--~gvD~v~d~vG 237 (348)
T PLN03154 226 P--EGIDIYFDNVG 237 (348)
T ss_pred C--CCcEEEEECCC
Confidence 2 36999999887
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.013 Score=48.11 Aligned_cols=124 Identities=19% Similarity=0.134 Sum_probs=72.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+++.+|-.|++.|. ++..+++++.+|+.++++++.++...+.+...... + ..+.++.+|+.+. ..
T Consensus 23 ~~~~vLd~G~G~G~---~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-~--~~~~~~~~d~~~~---------~~ 87 (188)
T PRK14968 23 KGDRVLEVGTGSGI---VAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIR-N--NGVEVIRSDLFEP---------FR 87 (188)
T ss_pred CCCEEEEEccccCH---HHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCC-C--cceEEEecccccc---------cc
Confidence 46789999988777 56666667899999999988888776666543211 0 1277888887542 11
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHH---HHHHHHhhhhhcCCCCeEEEEcC
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPA---LLSILLFPSLIRGSPSRIINVNS 207 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~---~l~~~~lp~m~~~~~g~Iv~isS 207 (298)
+ +.+|+++.|.......+.... .+.+...+..+..+.. .+.+.+.+.|+. +|.++++.+
T Consensus 88 ~--~~~d~vi~n~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~--gG~~~~~~~ 149 (188)
T PRK14968 88 G--DKFDVILFNPPYLPTEEEEEW-DDWLNYALSGGKDGREVIDRFLDEVGRYLKP--GGRILLLQS 149 (188)
T ss_pred c--cCceEEEECCCcCCCCchhhh-hhhhhhhhccCcChHHHHHHHHHHHHHhcCC--CeEEEEEEc
Confidence 1 269999999887543322221 1122222222222222 245555555543 456665544
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0025 Score=59.53 Aligned_cols=48 Identities=13% Similarity=0.365 Sum_probs=42.2
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~ 109 (298)
.++.++.++|.|+ ||+|+.+++.|+.+|+ +++++.|+.++.+++.+++
T Consensus 177 ~~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~ 225 (414)
T PRK13940 177 DNISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAF 225 (414)
T ss_pred cCccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHh
Confidence 3578899999999 9999999999999996 7999999998888776654
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.007 Score=54.86 Aligned_cols=79 Identities=20% Similarity=0.308 Sum_probs=52.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
|+++||+||+||+|....+.....|++++++..+.++.+ ..+++-. . ...|..+++ +.+-++++..
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~lGA---------d---~vi~y~~~~-~~~~v~~~t~ 208 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LLKELGA---------D---HVINYREED-FVEQVRELTG 208 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-HHHhcCC---------C---EEEcCCccc-HHHHHHHHcC
Confidence 899999999999999999988899987777777766666 4444311 1 122344444 3333333322
Q ss_pred ccCCccEEEEccCC
Q 022369 145 RLGPLHVLINNAGI 158 (298)
Q Consensus 145 ~~g~idilVnnag~ 158 (298)
. ..+|+++...|.
T Consensus 209 g-~gvDvv~D~vG~ 221 (326)
T COG0604 209 G-KGVDVVLDTVGG 221 (326)
T ss_pred C-CCceEEEECCCH
Confidence 1 259999998885
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.012 Score=53.12 Aligned_cols=117 Identities=9% Similarity=0.063 Sum_probs=77.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.++.+.|+|+ |++|.++|..++..|. .++++|++++.++..+.+++...+-. .++.... .+.++
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~---~~~~i~~---~~~~~------- 70 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFT---SPTKIYA---GDYSD------- 70 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhcccc---CCeEEEe---CCHHH-------
Confidence 3568999998 9999999999999987 89999999999998888887654211 1222221 22221
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCC
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSV 208 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~ 208 (298)
+.+-|++|..||.... + .++. .+.++.|. .+.+.+.+.+.+.. .+.+++++..
T Consensus 71 ----~~~adivIitag~~~k-~--g~~R---~dll~~N~----~i~~~i~~~i~~~~~~~~vivvsNP 124 (315)
T PRK00066 71 ----CKDADLVVITAGAPQK-P--GETR---LDLVEKNL----KIFKSIVGEVMASGFDGIFLVASNP 124 (315)
T ss_pred ----hCCCCEEEEecCCCCC-C--CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCeEEEEccCc
Confidence 1378999999998532 1 2232 33444443 44555556665543 5677777764
|
|
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.004 Score=56.34 Aligned_cols=113 Identities=12% Similarity=0.046 Sum_probs=70.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC-------EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH--H
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA-------HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV--R 137 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~-------~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~--~ 137 (298)
.+.|+|++|.+|..+|..|+..|. .++++|++++.- .......|+.|..... .
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~------------------~a~g~~~Dl~d~~~~~~~~ 62 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK------------------VLEGVVMELMDCAFPLLDG 62 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc------------------ccceeEeehhcccchhcCc
Confidence 378999999999999999998654 499999864420 1223344554443110 0
Q ss_pred HH--HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC--CCCeEEEEcC
Q 022369 138 FS--EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG--SPSRIINVNS 207 (298)
Q Consensus 138 ~~--~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~--~~g~Iv~isS 207 (298)
.. ....+.+.+.|++|..||.... ..++.++.+..| +.+.+.+.+.+.+. ..+.|+++|.
T Consensus 63 ~~~~~~~~~~~~~aDiVVitAG~~~~------~~~tr~~ll~~N----~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 63 VVPTHDPAVAFTDVDVAILVGAFPRK------EGMERRDLLSKN----VKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred eeccCChHHHhCCCCEEEEcCCCCCC------CCCcHHHHHHHH----HHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 00 0112233579999999998532 123356666655 45677777777775 3577777775
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.006 Score=56.43 Aligned_cols=83 Identities=18% Similarity=0.285 Sum_probs=57.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC-------------------chHHHHHHHHHHHhhcCCCCCcc
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN-------------------LKAANELIQKWQEEWSGKGLPLN 121 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 121 (298)
.+++++|+|.|+ ||+|.++++.|++.|. +++++|++ ..+.+.+.+.+.+..+. .+
T Consensus 132 ~l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~----v~ 206 (376)
T PRK08762 132 RLLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPD----VQ 206 (376)
T ss_pred HHhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCC----CE
Confidence 456777888855 7999999999999998 89999987 45666666666665432 35
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhcccCCccEEEEccC
Q 022369 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG 157 (298)
Q Consensus 122 ~~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag 157 (298)
+..+...+++ +.+.+++ .+.|++|++..
T Consensus 207 v~~~~~~~~~-~~~~~~~-------~~~D~Vv~~~d 234 (376)
T PRK08762 207 VEAVQERVTS-DNVEALL-------QDVDVVVDGAD 234 (376)
T ss_pred EEEEeccCCh-HHHHHHH-------hCCCEEEECCC
Confidence 5555555543 2333332 25788888765
|
|
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0025 Score=56.56 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=61.3
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
...+|-||++--|.-+|++|+.+|.+-++.+||.++++.+..++-. +...+.+++ ++.++++++
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~---------~~~~~p~~~--p~~~~~~~~----- 70 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGP---------EAAVFPLGV--PAALEAMAS----- 70 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCc---------cccccCCCC--HHHHHHHHh-----
Confidence 5789999999999999999999999999999999999999877643 344444444 665555544
Q ss_pred cCCccEEEEccCCC
Q 022369 146 LGPLHVLINNAGIF 159 (298)
Q Consensus 146 ~g~idilVnnag~~ 159 (298)
+.++++||+|-.
T Consensus 71 --~~~VVlncvGPy 82 (382)
T COG3268 71 --RTQVVLNCVGPY 82 (382)
T ss_pred --cceEEEeccccc
Confidence 689999999964
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0071 Score=55.05 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=47.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc---------------------hHHHHHHHHHHHhhcCCCCC
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL---------------------KAANELIQKWQEEWSGKGLP 119 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~---------------------~~~~~~~~~~~~~~~~~~~~ 119 (298)
.++++.|+|.|+ ||+|..+|+.|++.|. ++.++|++. .+.+.+.+.+++..+ .
T Consensus 21 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp----~ 95 (339)
T PRK07688 21 KLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINS----D 95 (339)
T ss_pred HhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCC----C
Confidence 456688999998 7999999999999999 999999863 344445555554432 2
Q ss_pred ccEEEEEcCCCC
Q 022369 120 LNIEAMELDLLS 131 (298)
Q Consensus 120 ~~~~~~~~D~s~ 131 (298)
.++..+..|++.
T Consensus 96 v~v~~~~~~~~~ 107 (339)
T PRK07688 96 VRVEAIVQDVTA 107 (339)
T ss_pred cEEEEEeccCCH
Confidence 456666666653
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0037 Score=56.66 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=52.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
|+++||+||++++|...++.+...|+ +|+.+++++++.+.+.+++. ... + .|..+ +++.+.+.++.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lG---------a~~-v--i~~~~-~~~~~~i~~~~ 221 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELG---------FDA-A--INYKT-DNVAERLRELC 221 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcC---------CcE-E--EECCC-CCHHHHHHHHC
Confidence 48999999999999998887778899 89999999877766654331 111 1 22222 22333333332
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
. +.+|+++++.|.
T Consensus 222 ~--~gvd~vid~~g~ 234 (345)
T cd08293 222 P--EGVDVYFDNVGG 234 (345)
T ss_pred C--CCceEEEECCCc
Confidence 2 369999998874
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0045 Score=55.49 Aligned_cols=42 Identities=26% Similarity=0.355 Sum_probs=37.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.+.+++|+||++++|.++++.+...|++|+.++++.++.+.+
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~ 203 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKIL 203 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 367899999999999999999999999999999887765544
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.011 Score=51.40 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=56.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc-------------------hHHHHHHHHHHHhhcCCCCCcc
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL-------------------KAANELIQKWQEEWSGKGLPLN 121 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 121 (298)
.++++.|+|.|+ +|+|.++|+.|+..|. ++.++|.+. .+.+.+.+.+++..+. .+
T Consensus 29 ~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~----v~ 103 (245)
T PRK05690 29 KLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPH----IA 103 (245)
T ss_pred HhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCC----CE
Confidence 456788999988 8999999999999998 888987642 3445555555554332 46
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhcccCCccEEEEccC
Q 022369 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG 157 (298)
Q Consensus 122 ~~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag 157 (298)
+..+...++. +.+.+++ .+.|++|.+..
T Consensus 104 i~~~~~~i~~-~~~~~~~-------~~~DiVi~~~D 131 (245)
T PRK05690 104 IETINARLDD-DELAALI-------AGHDLVLDCTD 131 (245)
T ss_pred EEEEeccCCH-HHHHHHH-------hcCCEEEecCC
Confidence 6666666653 2232222 35788887754
|
|
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.011 Score=50.70 Aligned_cols=83 Identities=16% Similarity=0.258 Sum_probs=56.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC-------------------chHHHHHHHHHHHhhcCCCCCcc
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN-------------------LKAANELIQKWQEEWSGKGLPLN 121 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 121 (298)
.+.+++|+|.| .+|+|.++|+.|++.|. +++++|.+ ..+.+.+.+.+++..+. .+
T Consensus 18 ~L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~----~~ 92 (228)
T cd00757 18 KLKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD----VE 92 (228)
T ss_pred HHhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC----CE
Confidence 45567899998 56999999999999998 88888643 24556666666665432 46
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhcccCCccEEEEccC
Q 022369 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG 157 (298)
Q Consensus 122 ~~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag 157 (298)
+..+..+++ .+.+.+++ .+.|++|.+..
T Consensus 93 i~~~~~~i~-~~~~~~~~-------~~~DvVi~~~d 120 (228)
T cd00757 93 IEAYNERLD-AENAEELI-------AGYDLVLDCTD 120 (228)
T ss_pred EEEecceeC-HHHHHHHH-------hCCCEEEEcCC
Confidence 667666664 33333332 25788888765
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.01 Score=53.59 Aligned_cols=73 Identities=16% Similarity=0.189 Sum_probs=51.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|++++|+|++ |+|...++.....|++|+.++|++++++...+. - .-++ .|.+|++..+.+-+
T Consensus 166 pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l-G----------Ad~~--i~~~~~~~~~~~~~--- 228 (339)
T COG1064 166 PGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL-G----------ADHV--INSSDSDALEAVKE--- 228 (339)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh-C----------CcEE--EEcCCchhhHHhHh---
Confidence 48999999999 999877777777999999999999887766433 1 1122 23334554433332
Q ss_pred cccCCccEEEEccC
Q 022369 144 GRLGPLHVLINNAG 157 (298)
Q Consensus 144 ~~~g~idilVnnag 157 (298)
..|++|++++
T Consensus 229 ----~~d~ii~tv~ 238 (339)
T COG1064 229 ----IADAIIDTVG 238 (339)
T ss_pred ----hCcEEEECCC
Confidence 1899999988
|
|
| >TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0078 Score=53.48 Aligned_cols=79 Identities=20% Similarity=0.275 Sum_probs=52.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|++++|+|+++++|.+++..+...|++|+++.+++++.+.+ +++ + ... ..+..+.+....+.+ ..
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~-------g--~~~---~~~~~~~~~~~~~~~-~~ 204 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAAC-EAL-------G--ADI---AINYREEDFVEVVKA-ET 204 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHc-------C--CcE---EEecCchhHHHHHHH-Hc
Confidence 468999999999999999999999999999999987766533 221 1 111 123333333333322 22
Q ss_pred cccCCccEEEEccC
Q 022369 144 GRLGPLHVLINNAG 157 (298)
Q Consensus 144 ~~~g~idilVnnag 157 (298)
.. ..+|++|+++|
T Consensus 205 ~~-~~~d~~i~~~~ 217 (325)
T TIGR02824 205 GG-KGVDVILDIVG 217 (325)
T ss_pred CC-CCeEEEEECCc
Confidence 21 25999999987
|
Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized. |
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.014 Score=53.54 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=48.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc-------------------hHHHHHHHHHHHhhcCCCCCcc
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL-------------------KAANELIQKWQEEWSGKGLPLN 121 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 121 (298)
.+++++|+|.|+ +|+|.++++.|+..|. ++.++|.+. .+.+.+++.+++..+. .+
T Consensus 25 ~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~----v~ 99 (355)
T PRK05597 25 SLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPD----VK 99 (355)
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCC----cE
Confidence 466788999988 7999999999999998 899988653 4667777777765443 35
Q ss_pred EEEEEcCCC
Q 022369 122 IEAMELDLL 130 (298)
Q Consensus 122 ~~~~~~D~s 130 (298)
+..+..+++
T Consensus 100 v~~~~~~i~ 108 (355)
T PRK05597 100 VTVSVRRLT 108 (355)
T ss_pred EEEEEeecC
Confidence 666555554
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0033 Score=54.85 Aligned_cols=73 Identities=16% Similarity=0.286 Sum_probs=54.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
.++|+|||+- |+.+|.+|.+.|+.|+...++....+...+. ....+..|..+.+++.+++.+
T Consensus 2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~------------g~~~v~~g~l~~~~l~~~l~~----- 63 (256)
T TIGR00715 2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIH------------QALTVHTGALDPQELREFLKR----- 63 (256)
T ss_pred eEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCcccccccc------------CCceEEECCCCHHHHHHHHHh-----
Confidence 5899999998 9999999999999999999887655444211 122344666777777666655
Q ss_pred CCccEEEEccC
Q 022369 147 GPLHVLINNAG 157 (298)
Q Consensus 147 g~idilVnnag 157 (298)
.++|++|+.+.
T Consensus 64 ~~i~~VIDAtH 74 (256)
T TIGR00715 64 HSIDILVDATH 74 (256)
T ss_pred cCCCEEEEcCC
Confidence 37999998765
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0042 Score=48.45 Aligned_cols=56 Identities=23% Similarity=0.257 Sum_probs=45.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLD 133 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 133 (298)
+++.+++.|.+ .|.++|..|++.|++|+.+|.+++..+...+. .+.++..|+.+++
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~ 71 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPN 71 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCC
Confidence 35679999998 88888999999999999999998876655332 3678888988765
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.016 Score=49.18 Aligned_cols=36 Identities=25% Similarity=0.423 Sum_probs=31.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN 98 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~ 98 (298)
.+++++|+|.|+ +|+|..+|+.|++.|. +++++|.+
T Consensus 25 ~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 355678999985 7999999999999998 69999887
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.028 Score=43.89 Aligned_cols=80 Identities=19% Similarity=0.390 Sum_probs=56.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC-------------------chHHHHHHHHHHHhhcCCCCCccEEE
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN-------------------LKAANELIQKWQEEWSGKGLPLNIEA 124 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (298)
+++++|.|+ +|+|.++|+.|++.|. +++++|.+ ..+.+.+.+.+++..+. .++..
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~----~~v~~ 76 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPD----VEVEA 76 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTT----SEEEE
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCc----eeeee
Confidence 356777775 5899999999999999 89998753 24667777777766543 47888
Q ss_pred EEcCCCCHHHHHHHHHHHhcccCCccEEEEccC
Q 022369 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG 157 (298)
Q Consensus 125 ~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag 157 (298)
+..++ +.+...++++ +.|++|.+..
T Consensus 77 ~~~~~-~~~~~~~~~~-------~~d~vi~~~d 101 (135)
T PF00899_consen 77 IPEKI-DEENIEELLK-------DYDIVIDCVD 101 (135)
T ss_dssp EESHC-SHHHHHHHHH-------TSSEEEEESS
T ss_pred eeccc-cccccccccc-------CCCEEEEecC
Confidence 88888 3444444442 5788888754
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0098 Score=52.92 Aligned_cols=42 Identities=19% Similarity=0.323 Sum_probs=37.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
++++++|+|+++++|.+++..+...|++|++++++.++.+.+
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~ 185 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDAL 185 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 367899999999999999999999999999999987766654
|
This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh |
| >PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0021 Score=44.43 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=22.5
Q ss_pred CEEEEeCCCCchHHH--HHHHHHHcCCEEEEEEcC
Q 022369 66 LTCIVTGSTSGIGRE--IARQLAESGAHVVMAVRN 98 (298)
Q Consensus 66 k~vlITGas~GIG~~--~a~~la~~G~~Vil~~r~ 98 (298)
|.|||+|+|+|.|++ ++..| ..|++.+-++..
T Consensus 40 K~VLViGaStGyGLAsRIa~aF-g~gA~TiGV~fE 73 (78)
T PF12242_consen 40 KKVLVIGASTGYGLASRIAAAF-GAGADTIGVSFE 73 (78)
T ss_dssp SEEEEES-SSHHHHHHHHHHHH-CC--EEEEEE--
T ss_pred ceEEEEecCCcccHHHHHHHHh-cCCCCEEEEeec
Confidence 899999999999999 55555 678888877654
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0052 Score=50.09 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=35.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~ 100 (298)
.+++||.++|.|++.-.|..+|+.|.++|++|.++.|+.+
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~ 79 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTK 79 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCch
Confidence 4688999999999777899999999999999999998853
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.012 Score=55.44 Aligned_cols=47 Identities=30% Similarity=0.552 Sum_probs=40.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~ 109 (298)
++.+++++|.|+ |++|..+++.|...|+ +|++++|+.++.+.+.+++
T Consensus 179 ~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~ 226 (423)
T PRK00045 179 DLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEF 226 (423)
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc
Confidence 467899999987 9999999999999998 8999999998887776553
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.023 Score=46.65 Aligned_cols=31 Identities=29% Similarity=0.481 Sum_probs=27.2
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc
Q 022369 68 CIVTGSTSGIGREIARQLAESGA-HVVMAVRNL 99 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~ 99 (298)
|+|.|+ +|+|.++++.|++.|. +++++|.+.
T Consensus 2 VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred EEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 677775 8999999999999999 699999875
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0081 Score=53.20 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=34.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN 98 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~ 98 (298)
.+++||.++|.|+++-.|+.++..|+++|++|.++.|+
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~ 192 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR 192 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 36889999999999989999999999999999998874
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.041 Score=52.54 Aligned_cols=79 Identities=15% Similarity=0.038 Sum_probs=52.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch-HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK-AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
+++++.++|.|+ |++|+++|+.|+++|++|++++++.. ......+.+++. .+.++..+-..
T Consensus 13 ~~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~--------gv~~~~~~~~~--------- 74 (480)
T PRK01438 13 DWQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEAL--------GATVRLGPGPT--------- 74 (480)
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHc--------CCEEEECCCcc---------
Confidence 456789999997 67999999999999999999986643 333334444432 23333322111
Q ss_pred HHhcccCCccEEEEccCCCCCC
Q 022369 141 AWNGRLGPLHVLINNAGIFSIG 162 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~ 162 (298)
.....|.+|..+|+....
T Consensus 75 ----~~~~~D~Vv~s~Gi~~~~ 92 (480)
T PRK01438 75 ----LPEDTDLVVTSPGWRPDA 92 (480)
T ss_pred ----ccCCCCEEEECCCcCCCC
Confidence 013589999999986543
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.011 Score=44.73 Aligned_cols=71 Identities=27% Similarity=0.339 Sum_probs=52.1
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccC
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLG 147 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g 147 (298)
++|-|.+ .+|+.+++.|.+.+.+|++++++++..+...++ .+.++.+|.++++..+++-- .
T Consensus 1 vvI~G~g-~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~------------~~~~i~gd~~~~~~l~~a~i------~ 61 (116)
T PF02254_consen 1 VVIIGYG-RIGREIAEQLKEGGIDVVVIDRDPERVEELREE------------GVEVIYGDATDPEVLERAGI------E 61 (116)
T ss_dssp EEEES-S-HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT------------TSEEEES-TTSHHHHHHTTG------G
T ss_pred eEEEcCC-HHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc------------ccccccccchhhhHHhhcCc------c
Confidence 4666764 799999999999777999999998886665433 36788999999997765521 2
Q ss_pred CccEEEEccC
Q 022369 148 PLHVLINNAG 157 (298)
Q Consensus 148 ~idilVnnag 157 (298)
+.+.+|...+
T Consensus 62 ~a~~vv~~~~ 71 (116)
T PF02254_consen 62 KADAVVILTD 71 (116)
T ss_dssp CESEEEEESS
T ss_pred ccCEEEEccC
Confidence 5677766554
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.021 Score=46.42 Aligned_cols=161 Identities=16% Similarity=0.097 Sum_probs=95.5
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
..++++.++|.||++--|..+.+++++.+- +|+++.|++.--.++ +..+.....|++..++.
T Consensus 14 f~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at-------------~k~v~q~~vDf~Kl~~~--- 77 (238)
T KOG4039|consen 14 FRMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPAT-------------DKVVAQVEVDFSKLSQL--- 77 (238)
T ss_pred HhhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCccc-------------cceeeeEEechHHHHHH---
Confidence 356678999999999999999999999984 999999984222221 12455556676655433
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+.. +-..|+++++-|.-.... +.+..+.++.-=.+.+.+++ ++++-.+++.+||..+.-
T Consensus 78 a~~----~qg~dV~FcaLgTTRgka-------GadgfykvDhDyvl~~A~~A----Ke~Gck~fvLvSS~GAd~------ 136 (238)
T KOG4039|consen 78 ATN----EQGPDVLFCALGTTRGKA-------GADGFYKVDHDYVLQLAQAA----KEKGCKTFVLVSSAGADP------ 136 (238)
T ss_pred Hhh----hcCCceEEEeeccccccc-------ccCceEeechHHHHHHHHHH----HhCCCeEEEEEeccCCCc------
Confidence 322 247999999988643221 11111222211122223322 333445899999974321
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
.....|--.|.-++.=.. |+ . ==++....||++..+..+.
T Consensus 137 -----------sSrFlY~k~KGEvE~~v~----eL-~--F~~~~i~RPG~ll~~R~es 176 (238)
T KOG4039|consen 137 -----------SSRFLYMKMKGEVERDVI----EL-D--FKHIIILRPGPLLGERTES 176 (238)
T ss_pred -----------ccceeeeeccchhhhhhh----hc-c--ccEEEEecCcceecccccc
Confidence 233447777766553222 22 1 1266778899997776553
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.022 Score=44.91 Aligned_cols=77 Identities=21% Similarity=0.294 Sum_probs=49.3
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc-------------------hHHHHHHHHHHHhhcCCCCCccEEEEEc
Q 022369 68 CIVTGSTSGIGREIARQLAESGA-HVVMAVRNL-------------------KAANELIQKWQEEWSGKGLPLNIEAMEL 127 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (298)
++|.|+ +|+|.++|+.|++.|. ++.++|.+. .+.+.+.+.+++..+ ..++..+..
T Consensus 2 VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p----~v~i~~~~~ 76 (143)
T cd01483 2 VLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNP----GVNVTAVPE 76 (143)
T ss_pred EEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCC----CcEEEEEee
Confidence 678886 8999999999999998 799987652 344445555555432 235666655
Q ss_pred CCCCHHHHHHHHHHHhcccCCccEEEEccC
Q 022369 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAG 157 (298)
Q Consensus 128 D~s~~~~v~~~~~~~~~~~g~idilVnnag 157 (298)
++.+... .+.+.+.|++|.+..
T Consensus 77 ~~~~~~~--------~~~~~~~diVi~~~d 98 (143)
T cd01483 77 GISEDNL--------DDFLDGVDLVIDAID 98 (143)
T ss_pred ecChhhH--------HHHhcCCCEEEECCC
Confidence 5544322 111235777777655
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.012 Score=53.48 Aligned_cols=76 Identities=17% Similarity=0.167 Sum_probs=50.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|++++|+|+ +++|...+..+...|+ +|+++++++++++.+. ++. ... ..|..+.+ +.+ +
T Consensus 169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~-~lG---------a~~---vi~~~~~~-~~~----~ 229 (343)
T PRK09880 169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR-EMG---------ADK---LVNPQNDD-LDH----Y 229 (343)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH-HcC---------CcE---EecCCccc-HHH----H
Confidence 4789999986 8999999888888898 6888999988776442 221 111 12433322 222 2
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
.+..|.+|+++.++|.
T Consensus 230 ~~~~g~~D~vid~~G~ 245 (343)
T PRK09880 230 KAEKGYFDVSFEVSGH 245 (343)
T ss_pred hccCCCCCEEEECCCC
Confidence 2223569999999884
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.011 Score=53.16 Aligned_cols=78 Identities=13% Similarity=0.200 Sum_probs=52.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|.++||+||++++|..+++.+...|++|+.++++.++.+.+.+ + + .. .+ .|..+++..++ +.+..
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~-------G--a~-~v--i~~~~~~~~~~-v~~~~ 208 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-L-------G--FD-AV--FNYKTVSLEEA-LKEAA 208 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c-------C--CC-EE--EeCCCccHHHH-HHHHC
Confidence 47899999999999999888888889999999998877655532 2 1 11 11 23333322222 23332
Q ss_pred cccCCccEEEEccC
Q 022369 144 GRLGPLHVLINNAG 157 (298)
Q Consensus 144 ~~~g~idilVnnag 157 (298)
. +.+|+++++.|
T Consensus 209 ~--~gvd~vld~~g 220 (329)
T cd08294 209 P--DGIDCYFDNVG 220 (329)
T ss_pred C--CCcEEEEECCC
Confidence 2 36999999877
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.019 Score=53.66 Aligned_cols=42 Identities=21% Similarity=0.327 Sum_probs=36.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANE 104 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~ 104 (298)
.+.|++++|.|. |.||+.+|+.+...|++|+++++++.+...
T Consensus 209 ~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~ 250 (425)
T PRK05476 209 LIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQ 250 (425)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHH
Confidence 367999999997 589999999999999999999999876543
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.011 Score=49.79 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=31.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN 98 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~ 98 (298)
.++.++|+|.|+ ||+|..+|..|++.|. +++++|++
T Consensus 18 ~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 455678999988 6899999999999999 79999987
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0038 Score=58.99 Aligned_cols=81 Identities=19% Similarity=0.238 Sum_probs=54.8
Q ss_pred CCCCCCEEEEeCC----------------CCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEE
Q 022369 61 PPVNDLTCIVTGS----------------TSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124 (298)
Q Consensus 61 ~~~~~k~vlITGa----------------s~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (298)
.+++||.+|||+| ||-.|.++|++++.+|++|+++.-... +. .+..+.+
T Consensus 252 ~~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~-~~--------------~p~~v~~ 316 (475)
T PRK13982 252 KPLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD-LA--------------DPQGVKV 316 (475)
T ss_pred cccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC-CC--------------CCCCceE
Confidence 3589999999997 567999999999999999999874321 00 0123444
Q ss_pred EEcCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCC
Q 022369 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIG 162 (298)
Q Consensus 125 ~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~ 162 (298)
+. +...++.. +.+.+.+. .|++|.+|.++-..
T Consensus 317 i~--V~ta~eM~---~av~~~~~-~Di~I~aAAVaDyr 348 (475)
T PRK13982 317 IH--VESARQML---AAVEAALP-ADIAIFAAAVADWR 348 (475)
T ss_pred EE--ecCHHHHH---HHHHhhCC-CCEEEEecccccee
Confidence 43 33444444 44444443 69999999986543
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.038 Score=47.00 Aligned_cols=43 Identities=30% Similarity=0.475 Sum_probs=38.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~ 109 (298)
.+.|.||++.+|.+++..|++.|++|++.+|++++.+.+.+..
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~ 44 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKA 44 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHH
Confidence 4789999999999999999999999999999998887776654
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.03 Score=52.60 Aligned_cols=116 Identities=9% Similarity=0.034 Sum_probs=78.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHc-------CC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAES-------GA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~-------G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
.+.|+|++|-+|.++|..|+.. |. +++++++++++++..+-+++....... .++.+. . .+.++
T Consensus 102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~--~~v~i~-~--~~ye~--- 173 (444)
T PLN00112 102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLL--REVSIG-I--DPYEV--- 173 (444)
T ss_pred EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhc--CceEEe-c--CCHHH---
Confidence 5899999999999999999988 65 899999999999999888877541110 122211 1 22222
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhc--CCCCeEEEEcCC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR--GSPSRIINVNSV 208 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~--~~~g~Iv~isS~ 208 (298)
+.+-|++|..||.... + .++ =.+.++.| ..+.+...+.+.+ ...+.||++|..
T Consensus 174 --------~kdaDiVVitAG~prk-p--G~t---R~dLl~~N----~~I~k~i~~~I~~~a~p~~ivIVVsNP 228 (444)
T PLN00112 174 --------FQDAEWALLIGAKPRG-P--GME---RADLLDIN----GQIFAEQGKALNEVASRNVKVIVVGNP 228 (444)
T ss_pred --------hCcCCEEEECCCCCCC-C--CCC---HHHHHHHH----HHHHHHHHHHHHHhcCCCeEEEEcCCc
Confidence 2478999999998532 1 222 33445555 4566666777766 346777777763
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.018 Score=51.74 Aligned_cols=80 Identities=16% Similarity=0.176 Sum_probs=53.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+.+++|.|+++++|.+++..+.+.|++|+.++++.++.+.+.+.+. . -.+ .|..+.+..+++. +..
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g---------~-~~~--~~~~~~~~~~~v~-~~~ 211 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELG---------F-DAA--INYKTPDLAEALK-EAA 211 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcC---------C-ceE--EecCChhHHHHHH-Hhc
Confidence 46899999999999999999999999999999998776665433221 1 111 1223333222222 222
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
. +.+|+++++.|.
T Consensus 212 ~--~~~d~vi~~~g~ 224 (329)
T cd05288 212 P--DGIDVYFDNVGG 224 (329)
T ss_pred c--CCceEEEEcchH
Confidence 2 469999998873
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.016 Score=54.29 Aligned_cols=47 Identities=19% Similarity=0.459 Sum_probs=40.6
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcC-CEEEEEEcCchHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESG-AHVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G-~~Vil~~r~~~~~~~~~~~~ 109 (298)
++.+++++|.|+ |.+|..+++.|...| .+|++++|+.++.+++.+++
T Consensus 177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~ 224 (417)
T TIGR01035 177 SLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKEL 224 (417)
T ss_pred CccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence 477899999997 999999999999999 68999999988877665543
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.016 Score=48.72 Aligned_cols=37 Identities=22% Similarity=0.383 Sum_probs=33.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
+++||.+||.|| |.+|...++.|.+.|++|++++++.
T Consensus 7 ~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 7 DLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 688999999998 7899999999999999999998764
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.059 Score=48.47 Aligned_cols=117 Identities=15% Similarity=0.212 Sum_probs=69.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCC-CCHHHHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA--HVVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDL-LSLDSVVRFSEA 141 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~-s~~~~v~~~~~~ 141 (298)
.+.|+|+++.+|..++..|+..|. .|++++|++ ++++....++.......+. ... +.. +|.+ .
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~--~~~---i~~~~d~~-------~ 69 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGI--DAE---IKISSDLS-------D 69 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCC--CcE---EEECCCHH-------H
Confidence 588999999999999999999986 599999965 5666555555432211110 111 111 1211 1
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVM 209 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~ 209 (298)
+.+-|++|.++|.... ...+. .+.++.|.. +++.+.+.|.+. ..+.+|++++..
T Consensus 70 ----l~~aDiViitag~p~~---~~~~r---~dl~~~n~~----i~~~~~~~i~~~~~~~~viv~~npv 124 (309)
T cd05294 70 ----VAGSDIVIITAGVPRK---EGMSR---LDLAKKNAK----IVKKYAKQIAEFAPDTKILVVTNPV 124 (309)
T ss_pred ----hCCCCEEEEecCCCCC---CCCCH---HHHHHHHHH----HHHHHHHHHHHHCCCeEEEEeCCch
Confidence 2378999999998532 12222 233444443 444444444433 356888888754
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.048 Score=49.26 Aligned_cols=120 Identities=13% Similarity=0.093 Sum_probs=72.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcC-CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESG-AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G-~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+.+.+.|.|| |.+|..+|..++..| +.|+++|++++.++...-++...... .+....+ .. -+|.++
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~--~~~~~~i-~~-~~d~~~-------- 70 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTL--VGSNINI-LG-TNNYED-------- 70 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccc--cCCCeEE-Ee-CCCHHH--------
Confidence 4567999997 789999999999999 69999999987765433333221110 0111111 11 122221
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVM 209 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~ 209 (298)
+.+-|++|.++|..... ..+ -.+.+..|. .+.+.+.+.|.+.. .+.++++|...
T Consensus 71 ---l~~ADiVVitag~~~~~---g~~---r~dll~~n~----~i~~~i~~~i~~~~p~a~vivvsNP~ 125 (319)
T PTZ00117 71 ---IKDSDVVVITAGVQRKE---EMT---REDLLTING----KIMKSVAESVKKYCPNAFVICVTNPL 125 (319)
T ss_pred ---hCCCCEEEECCCCCCCC---CCC---HHHHHHHHH----HHHHHHHHHHHHHCCCeEEEEecChH
Confidence 12679999999975321 122 234555555 45666677776644 45577777644
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.02 Score=51.52 Aligned_cols=46 Identities=26% Similarity=0.458 Sum_probs=39.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~ 109 (298)
+.+++++|.|+ |.+|..+++.|...|. +|++++|++++.+++.+++
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~ 222 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKEL 222 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHc
Confidence 67899999987 9999999999998774 8999999998888776654
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.029 Score=52.29 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=37.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.+.|++|+|.|++ .||+.+|+.+...|++|+++++++.+++..
T Consensus 199 ~l~GktVvViG~G-~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A 241 (413)
T cd00401 199 MIAGKVAVVAGYG-DVGKGCAQSLRGQGARVIVTEVDPICALQA 241 (413)
T ss_pred CCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEECChhhHHHH
Confidence 3579999999987 799999999999999999999998876654
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.039 Score=48.66 Aligned_cols=107 Identities=15% Similarity=0.113 Sum_probs=70.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
|+|++|++|++..|.-..+----+|++||-++-.+++.+-+.+++.- +. -.|-..+ ++.+.+++..-
T Consensus 151 GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lGf--------D~----~idyk~~-d~~~~L~~a~P 217 (340)
T COG2130 151 GETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELGF--------DA----GIDYKAE-DFAQALKEACP 217 (340)
T ss_pred CCEEEEEecccccchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcCC--------ce----eeecCcc-cHHHHHHHHCC
Confidence 89999999999999765544445699999999999988877666421 11 2344444 33333333322
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~ 214 (298)
..||+.+-|.|-- ...+++++|.. .+||+...-++++...
T Consensus 218 --~GIDvyfeNVGg~--------------------------v~DAv~~~ln~--~aRi~~CG~IS~YN~~ 257 (340)
T COG2130 218 --KGIDVYFENVGGE--------------------------VLDAVLPLLNL--FARIPVCGAISQYNAP 257 (340)
T ss_pred --CCeEEEEEcCCch--------------------------HHHHHHHhhcc--ccceeeeeehhhcCCC
Confidence 2699999999951 22344555554 4689888777666543
|
|
| >cd08244 MDR_enoyl_red Possible enoyl reductase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.021 Score=51.02 Aligned_cols=79 Identities=24% Similarity=0.307 Sum_probs=53.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+.+++|+|+++++|.+++..+...|++|+.++++.++.+.+ +++ + .. .. .|..+.+..+++.+.. .
T Consensus 143 ~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~-~~~-------g--~~-~~--~~~~~~~~~~~~~~~~-~ 208 (324)
T cd08244 143 GDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALV-RAL-------G--AD-VA--VDYTRPDWPDQVREAL-G 208 (324)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHc-------C--CC-EE--EecCCccHHHHHHHHc-C
Confidence 67899999999999999999999999999999987776544 221 1 11 11 2333333333332222 1
Q ss_pred ccCCccEEEEccCC
Q 022369 145 RLGPLHVLINNAGI 158 (298)
Q Consensus 145 ~~g~idilVnnag~ 158 (298)
. ..+|+++++.|.
T Consensus 209 ~-~~~d~vl~~~g~ 221 (324)
T cd08244 209 G-GGVTVVLDGVGG 221 (324)
T ss_pred C-CCceEEEECCCh
Confidence 1 259999998773
|
Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.078 Score=50.14 Aligned_cols=41 Identities=27% Similarity=0.312 Sum_probs=36.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAA 102 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~ 102 (298)
..+.||+++|.|.+. ||+.+|+.+...|++|+++++++.+.
T Consensus 250 ~~LaGKtVgVIG~G~-IGr~vA~rL~a~Ga~ViV~e~dp~~a 290 (476)
T PTZ00075 250 VMIAGKTVVVCGYGD-VGKGCAQALRGFGARVVVTEIDPICA 290 (476)
T ss_pred CCcCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchhH
Confidence 368899999999885 99999999999999999999887654
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.021 Score=51.64 Aligned_cols=77 Identities=17% Similarity=0.113 Sum_probs=51.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCE-EEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAH-VVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~-Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
|++++|+|+ +++|...+..+...|++ |+++++++++.+.+ +++. .. ...|..+.+ .+++.+ +.
T Consensus 164 g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~-~~~g---------a~---~~i~~~~~~-~~~~~~-~~ 227 (339)
T cd08239 164 RDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPSPERLELA-KALG---------AD---FVINSGQDD-VQEIRE-LT 227 (339)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHhC---------CC---EEEcCCcch-HHHHHH-Hh
Confidence 789999986 89999999988889998 99999988776554 3321 11 123444433 333322 22
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
.. ..+|++|.+.|.
T Consensus 228 ~~-~~~d~vid~~g~ 241 (339)
T cd08239 228 SG-AGADVAIECSGN 241 (339)
T ss_pred CC-CCCCEEEECCCC
Confidence 21 269999999884
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.036 Score=52.27 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=36.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANE 104 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~ 104 (298)
.+.||+++|.|.+ .||+.+|+.+...|++|+++++++.+...
T Consensus 251 ~LaGKtVvViGyG-~IGr~vA~~aka~Ga~VIV~e~dp~r~~e 292 (477)
T PLN02494 251 MIAGKVAVICGYG-DVGKGCAAAMKAAGARVIVTEIDPICALQ 292 (477)
T ss_pred ccCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCchhhHH
Confidence 3679999999988 89999999999999999999998766443
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.031 Score=46.83 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=29.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN 98 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~ 98 (298)
+++.+|+|.|++ |+|.++++.|+..|. ++.++|.+
T Consensus 17 L~~s~VlviG~g-glGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 17 LRSAKVLIIGAG-ALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HhhCcEEEECCC-HHHHHHHHHHHHcCCCEEEEEECC
Confidence 455778888766 499999999999998 68898765
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.11 Score=46.88 Aligned_cols=125 Identities=13% Similarity=0.073 Sum_probs=72.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+.+.+.|.|+ |.+|..+|..++..|. .|+++|++++.++...-++.......+ ....+... +|.+ .
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~--~~~~I~~~--~d~~-------~- 71 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAG--SNSKVIGT--NNYE-------D- 71 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccC--CCeEEEEC--CCHH-------H-
Confidence 3467899995 7799999999999995 999999998875432222222111111 11222211 2222 1
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVM 209 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~ 209 (298)
+.+-|++|+++|........+.+.+ -.+.+..| +.+.+.+.+.|.+.. .+.++++|...
T Consensus 72 ---l~~aDiVI~tag~~~~~~~~~~~~~-r~~~l~~n----~~i~~~i~~~i~~~~p~a~~iv~sNP~ 131 (321)
T PTZ00082 72 ---IAGSDVVIVTAGLTKRPGKSDKEWN-RDDLLPLN----AKIMDEVAEGIKKYCPNAFVIVITNPL 131 (321)
T ss_pred ---hCCCCEEEECCCCCCCCCCCcCCCC-HHHHHHHH----HHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 1368999999998642111111111 13344445 346777777776654 45778777654
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.019 Score=54.35 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=43.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSV 135 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v 135 (298)
.++|.|+ +.+|.++++.|.++|..|++++++++..+++.+.. .+.++.+|.++.+..
T Consensus 2 ~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-----------~~~~~~gd~~~~~~l 58 (453)
T PRK09496 2 KIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-----------DVRTVVGNGSSPDVL 58 (453)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-----------CEEEEEeCCCCHHHH
Confidence 5788887 89999999999999999999999988877664321 344555666655533
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.03 Score=51.10 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=54.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
-+|+.+||.||++|.|.+.++-....|+..++++++.++.+-. +++.. -...|..+++-+++..+.
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~-k~lGA------------d~vvdy~~~~~~e~~kk~- 221 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELV-KKLGA------------DEVVDYKDENVVELIKKY- 221 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHH-HHcCC------------cEeecCCCHHHHHHHHhh-
Confidence 4578999999999999999988888896666666665554433 23211 124577774433333222
Q ss_pred hcccCCccEEEEccCCC
Q 022369 143 NGRLGPLHVLINNAGIF 159 (298)
Q Consensus 143 ~~~~g~idilVnnag~~ 159 (298)
. .+.+|+++-|.|-.
T Consensus 222 ~--~~~~DvVlD~vg~~ 236 (347)
T KOG1198|consen 222 T--GKGVDVVLDCVGGS 236 (347)
T ss_pred c--CCCccEEEECCCCC
Confidence 2 46899999999874
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.085 Score=43.45 Aligned_cols=80 Identities=21% Similarity=0.148 Sum_probs=63.0
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
.-+++|++|+=-|++.|+ ++...+-.|+ +|+.++.+++.++...+...+. .+++.++.+|+++..
T Consensus 41 ~g~l~g~~V~DlG~GTG~---La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l------~g~v~f~~~dv~~~~----- 106 (198)
T COG2263 41 RGDLEGKTVLDLGAGTGI---LAIGAALLGASRVLAVDIDPEALEIARANAEEL------LGDVEFVVADVSDFR----- 106 (198)
T ss_pred cCCcCCCEEEEcCCCcCH---HHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhh------CCceEEEEcchhhcC-----
Confidence 357889999999998876 4444555675 8999999999988887776652 258999999999766
Q ss_pred HHHHhcccCCccEEEEccCCCCC
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSI 161 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~ 161 (298)
++.|.+|.|...+..
T Consensus 107 --------~~~dtvimNPPFG~~ 121 (198)
T COG2263 107 --------GKFDTVIMNPPFGSQ 121 (198)
T ss_pred --------CccceEEECCCCccc
Confidence 688999999987643
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.036 Score=50.97 Aligned_cols=79 Identities=14% Similarity=0.040 Sum_probs=52.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCC-HHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLS-LDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~-~~~v~~~~~~ 141 (298)
.|.++||+|+ ++||...+..+...|+ +|+.+++++++++.+. ++. ... ..|..+ .+.+.+.+.+
T Consensus 185 ~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~-~~G---------a~~---~i~~~~~~~~~~~~v~~ 250 (368)
T TIGR02818 185 EGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDINPAKFELAK-KLG---------ATD---CVNPNDYDKPIQEVIVE 250 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhC---------CCe---EEcccccchhHHHHHHH
Confidence 3789999985 8999999888888899 7999999988776552 221 111 123332 2233333444
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
+.. +.+|++|+++|.
T Consensus 251 ~~~--~g~d~vid~~G~ 265 (368)
T TIGR02818 251 ITD--GGVDYSFECIGN 265 (368)
T ss_pred HhC--CCCCEEEECCCC
Confidence 433 369999999884
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.037 Score=48.91 Aligned_cols=37 Identities=19% Similarity=0.258 Sum_probs=31.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL 99 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~ 99 (298)
.+++..|+|.|++ |+|..+|+.|+..|. ++.++|.+.
T Consensus 24 kL~~s~VlIvG~G-GLGs~va~~LA~aGVG~i~lvD~D~ 61 (287)
T PRK08223 24 RLRNSRVAIAGLG-GVGGIHLLTLARLGIGKFTIADFDV 61 (287)
T ss_pred HHhcCCEEEECCC-HHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 4556788888765 999999999999998 899988763
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.048 Score=50.26 Aligned_cols=64 Identities=16% Similarity=0.306 Sum_probs=45.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC-------------------chHHHHHHHHHHHhhcCCCCCcc
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN-------------------LKAANELIQKWQEEWSGKGLPLN 121 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 121 (298)
.+++..|+|.|+ ||+|..+++.|+..|. +++++|.+ ..+.+.+.+.+.+..+. .+
T Consensus 38 ~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~----v~ 112 (370)
T PRK05600 38 RLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPD----IR 112 (370)
T ss_pred HhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCC----Ce
Confidence 455678888876 5999999999999997 89999865 24566666666665432 34
Q ss_pred EEEEEcCCC
Q 022369 122 IEAMELDLL 130 (298)
Q Consensus 122 ~~~~~~D~s 130 (298)
+..+...++
T Consensus 113 i~~~~~~i~ 121 (370)
T PRK05600 113 VNALRERLT 121 (370)
T ss_pred eEEeeeecC
Confidence 555554443
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.065 Score=46.08 Aligned_cols=42 Identities=19% Similarity=0.354 Sum_probs=33.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANE 104 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~ 104 (298)
.+++++|+|.|++ |+|.++|+.|++.|. +++++|.+.-+..+
T Consensus 24 ~L~~~~VlIiG~G-GlGs~ia~~La~~Gvg~i~lvD~D~ve~sN 66 (231)
T PRK08328 24 KLKKAKVAVVGVG-GLGSPVAYYLAAAGVGRILLIDEQTPELSN 66 (231)
T ss_pred HHhCCcEEEECCC-HHHHHHHHHHHHcCCCEEEEEcCCccChhh
Confidence 4556788888765 999999999999998 89999876544333
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.019 Score=55.12 Aligned_cols=47 Identities=17% Similarity=0.381 Sum_probs=41.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~ 109 (298)
++.++.++|.|+ |++|..+++.|...|+ +|+++.|+.++.+.+.+++
T Consensus 263 ~l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~ 310 (519)
T PLN00203 263 SHASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEF 310 (519)
T ss_pred CCCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHh
Confidence 377899999999 9999999999999997 7999999999888876654
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.039 Score=49.56 Aligned_cols=30 Identities=27% Similarity=0.504 Sum_probs=26.3
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC
Q 022369 68 CIVTGSTSGIGREIARQLAESGA-HVVMAVRN 98 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~-~Vil~~r~ 98 (298)
|+|.|+ ||+|-++++.|+..|. ++.++|.+
T Consensus 2 VlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D 32 (312)
T cd01489 2 VLVVGA-GGIGCELLKNLVLTGFGEIHIIDLD 32 (312)
T ss_pred EEEECC-CHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 678886 8999999999999998 88898754
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.053 Score=43.88 Aligned_cols=85 Identities=22% Similarity=0.205 Sum_probs=57.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHH-------HHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKW-------QEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
++-+.|- +-+|..+|+.|++.|++|.+.+|++++.+++.++- .+.. ....++..=+.+.+++++++
T Consensus 3 ~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~------~~~dvvi~~v~~~~~v~~v~ 75 (163)
T PF03446_consen 3 KIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAA------EQADVVILCVPDDDAVEAVL 75 (163)
T ss_dssp EEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHH------HHBSEEEE-SSSHHHHHHHH
T ss_pred EEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHh------hcccceEeecccchhhhhhh
Confidence 4556665 68999999999999999999999999888876431 1111 13345566678888899988
Q ss_pred HH--HhcccCCccEEEEccCC
Q 022369 140 EA--WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 140 ~~--~~~~~g~idilVnnag~ 158 (298)
.. +.....+=+++|++.-.
T Consensus 76 ~~~~i~~~l~~g~iiid~sT~ 96 (163)
T PF03446_consen 76 FGENILAGLRPGKIIIDMSTI 96 (163)
T ss_dssp HCTTHGGGS-TTEEEEE-SS-
T ss_pred hhhHHhhccccceEEEecCCc
Confidence 88 76655445566665544
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.026 Score=49.51 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=54.7
Q ss_pred EEEeCCCCchHHHHHHHHHHcC----CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 68 CIVTGSTSGIGREIARQLAESG----AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G----~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+.|.||+|.+|..+|..|+..| ..|+++|+++++++....+++...... ...++. . -+| ..+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~-~~~~i~--~--~~d---~~~~----- 67 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPL-ADIKVS--I--TDD---PYEA----- 67 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhc-cCcEEE--E--CCc---hHHH-----
Confidence 4689998889999999999999 799999999999988888876643321 001111 1 112 1111
Q ss_pred cccCCccEEEEccCCCC
Q 022369 144 GRLGPLHVLINNAGIFS 160 (298)
Q Consensus 144 ~~~g~idilVnnag~~~ 160 (298)
+.+-|++|..+|...
T Consensus 68 --~~~aDiVv~t~~~~~ 82 (263)
T cd00650 68 --FKDADVVIITAGVGR 82 (263)
T ss_pred --hCCCCEEEECCCCCC
Confidence 236899999999754
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.034 Score=49.72 Aligned_cols=42 Identities=24% Similarity=0.254 Sum_probs=36.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.|.+++|.|+++++|.+++..+...|++|+.+.++.++.+.+
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~ 180 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAEL 180 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence 468999999999999999999999999999998887765554
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.066 Score=46.32 Aligned_cols=37 Identities=16% Similarity=0.349 Sum_probs=30.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL 99 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~ 99 (298)
.+++++|+|.|+ ||+|..+|+.|++.|. +++++|.+.
T Consensus 21 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 21 ALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 456678888876 5999999999999998 899988753
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.052 Score=49.45 Aligned_cols=41 Identities=22% Similarity=0.275 Sum_probs=36.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.|++++|.|+ +++|...+..+...|++|+++++++++++.+
T Consensus 166 ~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~ 206 (349)
T TIGR03201 166 KGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDIDPEKLEMM 206 (349)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 4789999999 9999999988888999999999998877654
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.056 Score=45.30 Aligned_cols=81 Identities=16% Similarity=0.283 Sum_probs=50.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc-------------------hHHHHHHHHHHHhhcCCCCCcc
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL-------------------KAANELIQKWQEEWSGKGLPLN 121 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 121 (298)
.+++++|+|.|+ +|+|.++++.|+..|. ++.++|.+. .+.+.+.+.+++..+. .+
T Consensus 18 ~L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~----v~ 92 (197)
T cd01492 18 RLRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPR----VK 92 (197)
T ss_pred HHHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCC----CE
Confidence 345678888875 5699999999999998 788887542 2445555555554433 35
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhcccCCccEEEEcc
Q 022369 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNA 156 (298)
Q Consensus 122 ~~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnna 156 (298)
+..+...+++ ...++ +.+.|++|.+.
T Consensus 93 i~~~~~~~~~--~~~~~-------~~~~dvVi~~~ 118 (197)
T cd01492 93 VSVDTDDISE--KPEEF-------FSQFDVVVATE 118 (197)
T ss_pred EEEEecCccc--cHHHH-------HhCCCEEEECC
Confidence 5555554441 11122 23568777653
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.1 Score=46.76 Aligned_cols=118 Identities=16% Similarity=0.150 Sum_probs=69.9
Q ss_pred chHHHHHHHHHHcCCEEEEEEcCchHHH-HHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccCCccEEEE
Q 022369 76 GIGREIARQLAESGAHVVMAVRNLKAAN-ELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLIN 154 (298)
Q Consensus 76 GIG~~~a~~la~~G~~Vil~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g~idilVn 154 (298)
-=|..+|+.|++.|+.|++++|+.++.+ +..+.+.+. | +. .++ +..++++ .-|++|.
T Consensus 30 ~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~Laea------G--A~--~Aa-----S~aEAAa-------~ADVVIL 87 (341)
T TIGR01724 30 YGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDA------G--VK--VVS-----DDKEAAK-------HGEIHVL 87 (341)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHC------C--Ce--ecC-----CHHHHHh-------CCCEEEE
Confidence 3488999999999999999999987664 333333331 1 11 111 2223333 4688888
Q ss_pred ccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccccCCCCccc
Q 022369 155 NAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG 234 (298)
Q Consensus 155 nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (298)
+.... +..++++ .-+++.+.+ +.-||..|++. |
T Consensus 88 ~LPd~----------aaV~eVl-----------~GLaa~L~~--GaIVID~STIs--------------------P---- 120 (341)
T TIGR01724 88 FTPFG----------KGTFSIA-----------RTIIEHVPE--NAVICNTCTVS--------------------P---- 120 (341)
T ss_pred ecCCH----------HHHHHHH-----------HHHHhcCCC--CCEEEECCCCC--------------------H----
Confidence 76631 2233332 234555433 22455555542 1
Q ss_pred chhhHHHHHHHHHHHHHHcC-CCCCcEEEEeeCCccc
Q 022369 235 YSGSKLAQIKFSSILQKRLP-AESGINVVCVSPGIVS 270 (298)
Q Consensus 235 Y~asKaa~~~l~~~l~~e~~-~~~gI~v~~v~Pg~v~ 270 (298)
..|.+.|..+++ .+..+.|.+.||+.|.
T Consensus 121 --------~t~~~~~e~~l~~~r~d~~v~s~HP~~vP 149 (341)
T TIGR01724 121 --------VVLYYSLEKILRLKRTDVGISSMHPAAVP 149 (341)
T ss_pred --------HHHHHHHHHHhhcCccccCeeccCCCCCC
Confidence 245566666664 5578999999999983
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0036 Score=46.67 Aligned_cols=37 Identities=24% Similarity=0.376 Sum_probs=32.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
+++|+.+||.|| |.+|..-++.|++.|++|.+++...
T Consensus 4 ~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 4 DLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp --TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence 578999999999 7899999999999999999999986
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.02 Score=47.20 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=37.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQE 111 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~ 111 (298)
+|.|.|+ |-+|..+|..++..|++|++++++++.++...+.+++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 3667777 8899999999999999999999999999888887766
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.042 Score=50.79 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=52.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH-HHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSL-DSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~-~~v~~~~~~ 141 (298)
.|++++|.|+ ++||...+..+...|+ +|+.+++++++++.+. ++ |.. .+ .|..+. ++..+.+.+
T Consensus 198 ~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~-~~---------Ga~-~~--i~~~~~~~~~~~~v~~ 263 (381)
T PLN02740 198 AGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDINPEKFEKGK-EM---------GIT-DF--INPKDSDKPVHERIRE 263 (381)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHH-Hc---------CCc-EE--EecccccchHHHHHHH
Confidence 4789999985 8999999998888999 6999999988776652 22 111 12 233332 123333344
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
+... .+|+++.++|.
T Consensus 264 ~~~~--g~dvvid~~G~ 278 (381)
T PLN02740 264 MTGG--GVDYSFECAGN 278 (381)
T ss_pred HhCC--CCCEEEECCCC
Confidence 3332 69999999984
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.021 Score=45.11 Aligned_cols=44 Identities=16% Similarity=0.184 Sum_probs=38.3
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANE 104 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~ 104 (298)
.+++||.++|.|.+.-.|+.+|..|.++|++|.+++++..++++
T Consensus 24 ~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~ 67 (140)
T cd05212 24 VRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQS 67 (140)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHH
Confidence 37889999999999999999999999999999999876544443
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >cd08241 QOR1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.037 Score=48.99 Aligned_cols=42 Identities=21% Similarity=0.265 Sum_probs=36.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.+.+++|+|+++++|.+++..+...|+.|+.++++.++.+.+
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 180 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALA 180 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHH
Confidence 468999999999999999999999999999999987765544
|
QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.032 Score=57.72 Aligned_cols=77 Identities=25% Similarity=0.341 Sum_probs=60.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcC-CE-------------EEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCC
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESG-AH-------------VVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL 129 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G-~~-------------Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 129 (298)
+.|.++|.|+ |.+|...|+.|++.. +. |+++|++.++++++.+.. ..+..+++|+
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~----------~~~~~v~lDv 636 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGI----------ENAEAVQLDV 636 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhc----------CCCceEEeec
Confidence 3578999997 899999999999763 33 888999988877765543 1456889999
Q ss_pred CCHHHHHHHHHHHhcccCCccEEEEccCC
Q 022369 130 LSLDSVVRFSEAWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 130 s~~~~v~~~~~~~~~~~g~idilVnnag~ 158 (298)
+|.+++.++++ ++|++|++...
T Consensus 637 ~D~e~L~~~v~-------~~DaVIsalP~ 658 (1042)
T PLN02819 637 SDSESLLKYVS-------QVDVVISLLPA 658 (1042)
T ss_pred CCHHHHHHhhc-------CCCEEEECCCc
Confidence 99988766655 48999998875
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.056 Score=49.65 Aligned_cols=79 Identities=13% Similarity=0.112 Sum_probs=53.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH-HHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSL-DSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~-~~v~~~~~~ 141 (298)
.|.++||.|+ +++|...+..+...|+ +|+.++++.++++.+ +++ +... + .|..+. +++.+.+.+
T Consensus 186 ~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~-~~l---------Ga~~-~--i~~~~~~~~~~~~v~~ 251 (368)
T cd08300 186 PGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDINPDKFELA-KKF---------GATD-C--VNPKDHDKPIQQVLVE 251 (368)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHc---------CCCE-E--EcccccchHHHHHHHH
Confidence 4789999975 8999999998888999 799999998877654 222 1111 1 233332 234444444
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
+.. +.+|+++.+.|.
T Consensus 252 ~~~--~g~d~vid~~g~ 266 (368)
T cd08300 252 MTD--GGVDYTFECIGN 266 (368)
T ss_pred HhC--CCCcEEEECCCC
Confidence 433 369999998874
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.13 Score=46.24 Aligned_cols=117 Identities=17% Similarity=0.078 Sum_probs=74.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
..+.|+|+ |.+|..+|..++..|. .++++|.+++.++..+.+++...+-.. ...+... .|.++
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~---~~~v~~~--~dy~~--------- 68 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLK---NPKIEAD--KDYSV--------- 68 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCC---CCEEEEC--CCHHH---------
Confidence 36889996 9999999999998875 799999999888888888776542111 1122211 22221
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVM 209 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~ 209 (298)
+.+-|++|.+||.... + .++. .+.+..| ..+.+.+.+.+.+.. .+.++++|...
T Consensus 69 --~~~adivvitaG~~~k-~--g~~R---~dll~~N----~~i~~~~~~~i~~~~p~~~vivvsNP~ 123 (312)
T cd05293 69 --TANSKVVIVTAGARQN-E--GESR---LDLVQRN----VDIFKGIIPKLVKYSPNAILLVVSNPV 123 (312)
T ss_pred --hCCCCEEEECCCCCCC-C--CCCH---HHHHHHH----HHHHHHHHHHHHHhCCCcEEEEccChH
Confidence 1368999999998542 1 2232 2344444 345555555555543 57777777643
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.028 Score=48.14 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=56.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
.++|.|+ +-+|..+|+.|.+.|++|++++++++..++...+- ..++.+.+|-++++.++++--
T Consensus 2 ~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~----------~~~~~v~gd~t~~~~L~~agi------ 64 (225)
T COG0569 2 KIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE----------LDTHVVIGDATDEDVLEEAGI------ 64 (225)
T ss_pred EEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh----------cceEEEEecCCCHHHHHhcCC------
Confidence 3555555 46999999999999999999999999888754321 267889999999996655411
Q ss_pred CCccEEEEccCC
Q 022369 147 GPLHVLINNAGI 158 (298)
Q Consensus 147 g~idilVnnag~ 158 (298)
.+.|++|-..|-
T Consensus 65 ~~aD~vva~t~~ 76 (225)
T COG0569 65 DDADAVVAATGN 76 (225)
T ss_pred CcCCEEEEeeCC
Confidence 257777766554
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.046 Score=51.68 Aligned_cols=78 Identities=18% Similarity=0.193 Sum_probs=57.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
...++++|.|+ +.+|..+++.|.+.|.+|++++++++..+...++. ..+.++..|.++++..++.-
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~----------~~~~~i~gd~~~~~~L~~~~--- 294 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL----------PNTLVLHGDGTDQELLEEEG--- 294 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC----------CCCeEEECCCCCHHHHHhcC---
Confidence 34688999999 89999999999999999999999988777664432 13567788998887654431
Q ss_pred hcccCCccEEEEccC
Q 022369 143 NGRLGPLHVLINNAG 157 (298)
Q Consensus 143 ~~~~g~idilVnnag 157 (298)
..+.|.+|...+
T Consensus 295 ---~~~a~~vi~~~~ 306 (453)
T PRK09496 295 ---IDEADAFIALTN 306 (453)
T ss_pred ---CccCCEEEECCC
Confidence 125666665433
|
|
| >cd05286 QOR2 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.05 Score=47.98 Aligned_cols=42 Identities=21% Similarity=0.237 Sum_probs=36.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
+|++++|.|+++++|.+++..+...|++|+.+++++++.+.+
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 177 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELA 177 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 468999999999999999999999999999999887776554
|
Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone |
| >cd05282 ETR_like 2-enoyl thioester reductase-like | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.058 Score=48.11 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=36.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.|.+++|.|+++++|.+++..+...|++|+.++++.++.+.+
T Consensus 138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~ 179 (323)
T cd05282 138 PGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEEL 179 (323)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHH
Confidence 468999999999999999999999999999999987765544
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman |
| >cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR) | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.063 Score=47.64 Aligned_cols=42 Identities=26% Similarity=0.288 Sum_probs=36.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.|.+++|.|+++++|.+++......|++|+.+++++++.+.+
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 183 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALL 183 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 368999999999999999999999999999999887765444
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PTZ00354 alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.072 Score=47.69 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=36.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.|.+++|+|+++++|.+++..+...|++++++.++.++.+.+
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 181 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFC 181 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 368999999999999999999999999988888887765555
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.027 Score=49.85 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=35.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
+++||.++|.|.+.-+|+.+|..|.++|++|.++.++.
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t 192 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS 192 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc
Confidence 68899999999999999999999999999999998764
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.067 Score=49.13 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=52.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH-HHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSL-DSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~-~~v~~~~~~ 141 (298)
.|.+++|.|+ +++|...++.+...|+ +|+.++++.++.+.+ +++ |.. .+ .|..+. +++.+.+.+
T Consensus 187 ~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~-~~~---------Ga~-~~--i~~~~~~~~~~~~v~~ 252 (369)
T cd08301 187 KGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLNPSKFEQA-KKF---------GVT-EF--VNPKDHDKPVQEVIAE 252 (369)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc---------CCc-eE--EcccccchhHHHHHHH
Confidence 4789999985 8999998888888899 899999998776654 222 111 11 233321 234444444
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
+... .+|+++++.|.
T Consensus 253 ~~~~--~~d~vid~~G~ 267 (369)
T cd08301 253 MTGG--GVDYSFECTGN 267 (369)
T ss_pred HhCC--CCCEEEECCCC
Confidence 4432 69999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.026 Score=49.79 Aligned_cols=43 Identities=28% Similarity=0.471 Sum_probs=37.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQK 108 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~ 108 (298)
++.++|.|+ ||-+++++..|++.|+ +|.+++|+.++.+++.++
T Consensus 122 ~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~ 165 (272)
T PRK12550 122 DLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTGKALAEL 165 (272)
T ss_pred CCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 467899886 8999999999999998 699999999888877654
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.051 Score=49.62 Aligned_cols=39 Identities=28% Similarity=0.215 Sum_probs=32.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc---CchHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR---NLKAAN 103 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r---~~~~~~ 103 (298)
.|++++|+|+ +++|...+..+...|++|++++| ++++.+
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~ 213 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRDPPDPKAD 213 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCHHHHH
Confidence 5788999986 99999999887788999999998 445544
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.11 Score=44.67 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=25.8
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC
Q 022369 68 CIVTGSTSGIGREIARQLAESGA-HVVMAVRN 98 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~-~Vil~~r~ 98 (298)
++|.| .||+|-++++.|+..|. ++.++|.+
T Consensus 2 VlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D 32 (234)
T cd01484 2 VLLVG-AGGIGCELLKNLALMGFGQIHVIDMD 32 (234)
T ss_pred EEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 56666 67999999999999998 89998865
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.054 Score=41.76 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=55.7
Q ss_pred EEEEeCCCCchHHHHHHHHHH-cCCEEEE-EEcCc----------------------hHHHHHHHHHHHhhcCCCCCccE
Q 022369 67 TCIVTGSTSGIGREIARQLAE-SGAHVVM-AVRNL----------------------KAANELIQKWQEEWSGKGLPLNI 122 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~-~G~~Vil-~~r~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 122 (298)
.++|.|++|-+|+.+++.+.+ .|++++. ++|+. +.++++.++
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~-------------- 67 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEE-------------- 67 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH--------------
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhccc--------------
Confidence 488999999999999999998 6777665 56665 233333322
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcccCCccEEEEccCC
Q 022369 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 123 ~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag~ 158 (298)
.-+..|+|.++.+...++.+.+. ++.+++-..|.
T Consensus 68 ~DVvIDfT~p~~~~~~~~~~~~~--g~~~ViGTTG~ 101 (124)
T PF01113_consen 68 ADVVIDFTNPDAVYDNLEYALKH--GVPLVIGTTGF 101 (124)
T ss_dssp -SEEEEES-HHHHHHHHHHHHHH--T-EEEEE-SSS
T ss_pred CCEEEEcCChHHhHHHHHHHHhC--CCCEEEECCCC
Confidence 12668999999999999998887 78888888886
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.094 Score=48.50 Aligned_cols=116 Identities=9% Similarity=0.053 Sum_probs=74.7
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-E----EEE----EEcCchHHHHHHHHHHHhh-cCCCCCccEEEEEcCCCCHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-H----VVM----AVRNLKAANELIQKWQEEW-SGKGLPLNIEAMELDLLSLDSV 135 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-~----Vil----~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~s~~~~v 135 (298)
-.+.|+|++|-+|.++|..++..|. . |++ ++++.++++..+-+++... +.. ..+.+. . .+.++
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~---~~v~i~-~--~~y~~- 117 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLL---REVSIG-I--DPYEV- 117 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhc---CceEEe-c--CCHHH-
Confidence 3699999999999999999998875 3 444 4899999998888887653 211 122211 1 12221
Q ss_pred HHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhc-C-CCCeEEEEcCC
Q 022369 136 VRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR-G-SPSRIINVNSV 208 (298)
Q Consensus 136 ~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~-~-~~g~Iv~isS~ 208 (298)
+.+-|++|..||.... + ..+ =.+.++.| ..+.+...+.+.+ . ..+.||++|..
T Consensus 118 ----------~kdaDIVVitAG~prk-p--g~t---R~dll~~N----~~I~k~i~~~I~~~a~~~~iviVVsNP 172 (387)
T TIGR01757 118 ----------FEDADWALLIGAKPRG-P--GME---RADLLDIN----GQIFADQGKALNAVASKNCKVLVVGNP 172 (387)
T ss_pred ----------hCCCCEEEECCCCCCC-C--CCC---HHHHHHHH----HHHHHHHHHHHHHhCCCCeEEEEcCCc
Confidence 2478999999998532 1 222 23344444 4566666777766 3 45677777763
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >COG3007 Uncharacterized paraquat-inducible protein B [Function unknown] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.06 Score=47.14 Aligned_cols=89 Identities=19% Similarity=0.237 Sum_probs=57.1
Q ss_pred CEEEEeCCCCchHHH--HHHHHHHcCCEEEEEE-------cCchHHH-HHHHHHHHhhcCCCCCccEEEEEcCCCCHHHH
Q 022369 66 LTCIVTGSTSGIGRE--IARQLAESGAHVVMAV-------RNLKAAN-ELIQKWQEEWSGKGLPLNIEAMELDLLSLDSV 135 (298)
Q Consensus 66 k~vlITGas~GIG~~--~a~~la~~G~~Vil~~-------r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v 135 (298)
|.|||.|+|+|.|++ ++.+|- .|+.-+-+. +++...- -....+.+..+.+ |-..+-+..|.-+.+--
T Consensus 42 KkVLviGaSsGyGLa~RIsaaFG-~gAdTiGVffE~pgte~~~gtagwyn~~~f~~~A~~k--GlyAksingDaFS~e~k 118 (398)
T COG3007 42 KKVLVIGASSGYGLAARISAAFG-PGADTIGVFFERPGTERKPGTAGWYNNAAFKKFAKQK--GLYAKSINGDAFSDEMK 118 (398)
T ss_pred ceEEEEecCCcccHHHHHHHHhC-CCCceeeEEeecCCccCCCcchhhhHHHHHHHHHHhc--CceeeecccchhhHHHH
Confidence 789999999999998 444444 566655542 2211100 0001111112222 23566778898888888
Q ss_pred HHHHHHHhcccCCccEEEEccC
Q 022369 136 VRFSEAWNGRLGPLHVLINNAG 157 (298)
Q Consensus 136 ~~~~~~~~~~~g~idilVnnag 157 (298)
+++++.+++.+|++|.+|..-.
T Consensus 119 ~kvIe~Ik~~~g~vDlvvYSlA 140 (398)
T COG3007 119 QKVIEAIKQDFGKVDLVVYSLA 140 (398)
T ss_pred HHHHHHHHHhhccccEEEEecc
Confidence 8899999999999999998644
|
|
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.073 Score=47.64 Aligned_cols=41 Identities=34% Similarity=0.418 Sum_probs=36.6
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
+++++|.|+++++|.++++.....|++|+.+++++++.+.+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~ 187 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL 187 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH
Confidence 57999999999999999999999999999999998776555
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.071 Score=48.29 Aligned_cols=116 Identities=10% Similarity=0.013 Sum_probs=72.4
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-------EEEEEEcCc--hHHHHHHHHHHHhh-cCCCCCccEEEEEcCCCCHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-------HVVMAVRNL--KAANELIQKWQEEW-SGKGLPLNIEAMELDLLSLDSV 135 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-------~Vil~~r~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~s~~~~v 135 (298)
..+.|+|++|.+|..+|..|+..|. .++++|.++ ++++..+.+++... +.. ..+.+. . .+.
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~---~~~~i~-~--~~y--- 75 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLL---AGVVIT-D--DPN--- 75 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhc---CCcEEe-c--ChH---
Confidence 4689999999999999999998764 699999954 34555555554432 110 011111 1 111
Q ss_pred HHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhc-C-CCCeEEEEcCC
Q 022369 136 VRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR-G-SPSRIINVNSV 208 (298)
Q Consensus 136 ~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~-~-~~g~Iv~isS~ 208 (298)
+.+.+-|++|..||.... + .++ =++.+..| ..+.+.+.+.+.+ . ..+.++++|..
T Consensus 76 --------~~~~daDiVVitaG~~~k-~--g~t---R~dll~~N----a~i~~~i~~~i~~~~~~~~iiivvsNP 132 (326)
T PRK05442 76 --------VAFKDADVALLVGARPRG-P--GME---RKDLLEAN----GAIFTAQGKALNEVAARDVKVLVVGNP 132 (326)
T ss_pred --------HHhCCCCEEEEeCCCCCC-C--CCc---HHHHHHHH----HHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 122478999999997532 1 222 33444444 4577777777777 4 36788888763
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.057 Score=49.40 Aligned_cols=79 Identities=18% Similarity=0.197 Sum_probs=50.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|++++|.|+ +++|...+..+...|+ +|+.+++++++.+.+. ++ +.. . ..|..+++..+++ .+.
T Consensus 176 ~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~-~~---------Ga~-~--~i~~~~~~~~~~i-~~~ 240 (358)
T TIGR03451 176 RGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR-EF---------GAT-H--TVNSSGTDPVEAI-RAL 240 (358)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hc---------CCc-e--EEcCCCcCHHHHH-HHH
Confidence 4789999985 8999999888888899 4888999887766552 22 111 1 1233333322222 222
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
... ..+|++|.+.|.
T Consensus 241 ~~~-~g~d~vid~~g~ 255 (358)
T TIGR03451 241 TGG-FGADVVIDAVGR 255 (358)
T ss_pred hCC-CCCCEEEECCCC
Confidence 221 258999998884
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.1 Score=51.92 Aligned_cols=84 Identities=12% Similarity=0.164 Sum_probs=56.2
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc-------------------hHHHHHHHHHHHhhcCCCCCc
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL-------------------KAANELIQKWQEEWSGKGLPL 120 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~ 120 (298)
..+++++|+|.| .||+|..+|..|+..|. +++++|.+. .|.+.+.+.+.+..+ ..
T Consensus 39 ~kL~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP----~~ 113 (679)
T PRK14851 39 ERLAEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINP----FL 113 (679)
T ss_pred HHHhcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCC----CC
Confidence 356678899998 66999999999999998 888887532 344455555554433 34
Q ss_pred cEEEEEcCCCCHHHHHHHHHHHhcccCCccEEEEccC
Q 022369 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG 157 (298)
Q Consensus 121 ~~~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag 157 (298)
++..+...++ ++.+.++++ +.|++|.+..
T Consensus 114 ~I~~~~~~i~-~~n~~~~l~-------~~DvVid~~D 142 (679)
T PRK14851 114 EITPFPAGIN-ADNMDAFLD-------GVDVVLDGLD 142 (679)
T ss_pred eEEEEecCCC-hHHHHHHHh-------CCCEEEECCC
Confidence 6777777775 334444433 4677775543
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.033 Score=50.11 Aligned_cols=115 Identities=13% Similarity=0.077 Sum_probs=67.3
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 68 CIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
+.|+|++|.+|.++|..|+..|. .++++|+++ .+..+.++.... .......+.-.+ + ..+.
T Consensus 2 V~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a~DL~~~~------~~~~i~~~~~~~--~-------~~~~ 64 (312)
T TIGR01772 2 VAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVAADLSHIP------TAASVKGFSGEE--G-------LENA 64 (312)
T ss_pred EEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEEchhhcCC------cCceEEEecCCC--c-------hHHH
Confidence 78999999999999999998875 799999986 222222222210 011111100000 0 1112
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVM 209 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~ 209 (298)
+.+-|++|..||.... + . ++=.+.+..|+- +.+...+.+.+.. .+.|+++|...
T Consensus 65 ~~daDivvitaG~~~~-~--g---~~R~dll~~N~~----I~~~i~~~i~~~~p~~iiivvsNPv 119 (312)
T TIGR01772 65 LKGADVVVIPAGVPRK-P--G---MTRDDLFNVNAG----IVKDLVAAVAESCPKAMILVITNPV 119 (312)
T ss_pred cCCCCEEEEeCCCCCC-C--C---ccHHHHHHHhHH----HHHHHHHHHHHhCCCeEEEEecCch
Confidence 3478999999998532 1 1 223345555654 6666666666543 56777777754
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.3 Score=43.67 Aligned_cols=114 Identities=13% Similarity=0.085 Sum_probs=72.8
Q ss_pred EEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 69 IVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 69 lITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
.|.|+ +++|..+|..++..| .+++++|+++++++....++....... ........ .+.+ . +
T Consensus 2 ~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~---~~~~i~~~--~~~~-------~----l 64 (300)
T cd00300 2 TIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFL---ATGTIVRG--GDYA-------D----A 64 (300)
T ss_pred EEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhcccc---CCCeEEEC--CCHH-------H----h
Confidence 56776 579999999999998 589999999999998888887754321 01222221 2222 1 2
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVM 209 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~ 209 (298)
.+-|++|+++|.... ..++. .+.+..| ..+.+.+.+.+.+. ..+.++++|...
T Consensus 65 ~~aDiVIitag~p~~---~~~~R---~~l~~~n----~~i~~~~~~~i~~~~p~~~viv~sNP~ 118 (300)
T cd00300 65 ADADIVVITAGAPRK---PGETR---LDLINRN----APILRSVITNLKKYGPDAIILVVSNPV 118 (300)
T ss_pred CCCCEEEEcCCCCCC---CCCCH---HHHHHHH----HHHHHHHHHHHHHhCCCeEEEEccChH
Confidence 468999999998532 12222 2333333 44556666666654 357788877643
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.18 Score=46.05 Aligned_cols=117 Identities=16% Similarity=0.116 Sum_probs=75.7
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+.+.|+|+ |.+|.++|..++..|. .++++|.+++.++..+.+++....-.+ ...+.. -.+.++
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~---~~~i~~--~~dy~~--------- 102 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLP---RTKILA--STDYAV--------- 102 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCC---CCEEEe--CCCHHH---------
Confidence 58999996 8899999999998875 799999999988888888776532111 122221 112221
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVM 209 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~ 209 (298)
+.+-|++|..||.... + .++. .+.+..| ..+.+.+.+.+.+.. .+.++++|...
T Consensus 103 --~~daDiVVitAG~~~k-~--g~tR---~dll~~N----~~I~~~i~~~I~~~~p~~ivivvtNPv 157 (350)
T PLN02602 103 --TAGSDLCIVTAGARQI-P--GESR---LNLLQRN----VALFRKIIPELAKYSPDTILLIVSNPV 157 (350)
T ss_pred --hCCCCEEEECCCCCCC-c--CCCH---HHHHHHH----HHHHHHHHHHHHHHCCCeEEEEecCch
Confidence 1368999999998542 1 2232 2333333 455666666666543 57788887643
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.11 Score=48.25 Aligned_cols=49 Identities=33% Similarity=0.529 Sum_probs=43.1
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQ 110 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~ 110 (298)
.+++++++||.|++ -+|.-+|+.|+++|. +|+++.|+.++.+++++++.
T Consensus 174 ~~L~~~~vlvIGAG-em~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~ 223 (414)
T COG0373 174 GSLKDKKVLVIGAG-EMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG 223 (414)
T ss_pred cccccCeEEEEccc-HHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC
Confidence 34789999999985 599999999999995 89999999999999988864
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.11 Score=47.09 Aligned_cols=115 Identities=10% Similarity=0.009 Sum_probs=71.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC-------EEEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA-------HVVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~-------~Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
.+.|+|++|.+|..+|..|+..|. .++++|.++ ++++....++........ ..+.+. . .+.+
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~--~~~~i~-~--~~~~---- 75 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLL--AGVVAT-T--DPEE---- 75 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccccc--CCcEEe-c--ChHH----
Confidence 589999999999999999998884 799999965 446666666654321000 011111 1 1111
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC--CCeEEEEcC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS--PSRIINVNS 207 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~--~g~Iv~isS 207 (298)
.+.+-|++|..||.... + .++ -.+.++.| ..+.+.+.+.+.+.. .+.++++|.
T Consensus 76 -------~~~daDvVVitAG~~~k-~--g~t---R~dll~~N----a~i~~~i~~~i~~~~~~~~iiivvsN 130 (323)
T TIGR01759 76 -------AFKDVDAALLVGAFPRK-P--GME---RADLLSKN----GKIFKEQGKALNKVAKKDVKVLVVGN 130 (323)
T ss_pred -------HhCCCCEEEEeCCCCCC-C--CCc---HHHHHHHH----HHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 12367999999998532 1 222 33445545 456666666676653 567777765
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.079 Score=49.54 Aligned_cols=90 Identities=8% Similarity=0.010 Sum_probs=52.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC---EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA---HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~---~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.|.+++|.||++++|...+..+...|+ +|++++++.++++...+....... ..|.... ..|..+.++..+.+.
T Consensus 175 ~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~--~~Ga~~~--~i~~~~~~~~~~~v~ 250 (410)
T cd08238 175 PGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAA--SRGIELL--YVNPATIDDLHATLM 250 (410)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhcccccc--ccCceEE--EECCCccccHHHHHH
Confidence 467999999999999998776666554 799999998887765432110000 0011111 224333223333333
Q ss_pred HHhcccCCccEEEEccCC
Q 022369 141 AWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~ 158 (298)
++... ..+|++|.+.|.
T Consensus 251 ~~t~g-~g~D~vid~~g~ 267 (410)
T cd08238 251 ELTGG-QGFDDVFVFVPV 267 (410)
T ss_pred HHhCC-CCCCEEEEcCCC
Confidence 33222 258999998774
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.06 Score=49.38 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=48.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|++++|.|+ +++|...+..+...|++|++++.+.++..+..+++ |... + .|..+.+.+.+ .
T Consensus 183 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~---------Ga~~-v--i~~~~~~~~~~----~- 244 (360)
T PLN02586 183 PGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRL---------GADS-F--LVSTDPEKMKA----A- 244 (360)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhC---------CCcE-E--EcCCCHHHHHh----h-
Confidence 4789999765 89999998888888999998888766555443332 1111 1 23333332222 1
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
.+.+|++|.+.|.
T Consensus 245 --~~~~D~vid~~g~ 257 (360)
T PLN02586 245 --IGTMDYIIDTVSA 257 (360)
T ss_pred --cCCCCEEEECCCC
Confidence 2358999998883
|
|
| >cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.068 Score=48.03 Aligned_cols=41 Identities=24% Similarity=0.360 Sum_probs=33.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
+++++++||++++|...+......|++|+.+++++++.+.+
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~ 184 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLL 184 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 35566669999999999887777899999999998776655
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.091 Score=52.47 Aligned_cols=83 Identities=24% Similarity=0.252 Sum_probs=57.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCc------------------hHHHHHHHHHHHhhcCCCCCc
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNL------------------KAANELIQKWQEEWSGKGLPL 120 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~------------------~~~~~~~~~~~~~~~~~~~~~ 120 (298)
..+++++|+|.|+ |+|..+|..|++.|. +++++|.+. .|.+.+++.+.+..+ ..
T Consensus 103 ~~L~~~~V~IvG~--GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp----~i 176 (722)
T PRK07877 103 ERLGRLRIGVVGL--SVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDP----YL 176 (722)
T ss_pred HHHhcCCEEEEEe--cHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCC----CC
Confidence 3567789999999 499999999999994 899987642 345555555555433 35
Q ss_pred cEEEEEcCCCCHHHHHHHHHHHhcccCCccEEEEccC
Q 022369 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG 157 (298)
Q Consensus 121 ~~~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag 157 (298)
++..+...++ ++.+.++++ +.|++|.|.-
T Consensus 177 ~v~~~~~~i~-~~n~~~~l~-------~~DlVvD~~D 205 (722)
T PRK07877 177 PVEVFTDGLT-EDNVDAFLD-------GLDVVVEECD 205 (722)
T ss_pred EEEEEeccCC-HHHHHHHhc-------CCCEEEECCC
Confidence 7777777777 455555543 4677776654
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.2 Score=45.02 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=74.0
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 68 CIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
+.|.|+ |.+|..+|..|+.+|. .++++|.+++.++..+.++.....-... ..+.....| .++
T Consensus 2 i~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~-~~~~i~~~~---y~~----------- 65 (307)
T cd05290 2 LVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYS-TNTKIRAGD---YDD----------- 65 (307)
T ss_pred EEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCC-CCEEEEECC---HHH-----------
Confidence 578888 8999999999998885 7999999999888888887764321100 123333323 221
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcC
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNS 207 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS 207 (298)
+.+-|++|..||.... + .++.+ =.+.++.| ..+.+.+.+.+.+.. .+.++.+|.
T Consensus 66 ~~~aDivvitaG~~~k-p--g~tr~-R~dll~~N----~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 66 CADADIIVITAGPSID-P--GNTDD-RLDLAQTN----AKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred hCCCCEEEECCCCCCC-C--CCCch-HHHHHHHH----HHHHHHHHHHHHHhCCCeEEEEecC
Confidence 1368999999998532 1 22310 12333434 467777778777755 455555555
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.081 Score=47.44 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=36.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
+|.+++|.|+++++|.+++......|++|+.++++.++.+.+
T Consensus 139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~ 180 (329)
T cd08250 139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFL 180 (329)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHH
Confidence 368999999999999999988888999999999887766544
|
Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.027 Score=45.48 Aligned_cols=44 Identities=23% Similarity=0.378 Sum_probs=35.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
+++||.++|.|.+.-+|+-++..|.++|+.|.++..+.+++++.
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~ 76 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEI 76 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHH
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccce
Confidence 58899999999999999999999999999999988776555444
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.087 Score=48.44 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=50.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|++++|.|+ +++|...+..+...|+ +|+.+++++++++.+ +++ +.. . ..|..+++..++ +.++
T Consensus 191 ~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a-~~~---------Ga~-~--~i~~~~~~~~~~-i~~~ 255 (371)
T cd08281 191 PGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLNEDKLALA-REL---------GAT-A--TVNAGDPNAVEQ-VREL 255 (371)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHH-HHc---------CCc-e--EeCCCchhHHHH-HHHH
Confidence 4789999985 8999998888888899 699999998876644 222 111 1 233333332222 2332
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
.. +.+|++|.+.|.
T Consensus 256 ~~--~g~d~vid~~G~ 269 (371)
T cd08281 256 TG--GGVDYAFEMAGS 269 (371)
T ss_pred hC--CCCCEEEECCCC
Confidence 22 269999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.061 Score=52.48 Aligned_cols=39 Identities=23% Similarity=0.410 Sum_probs=32.9
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN 98 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~ 98 (298)
....+++..|+|.|+ ||+|-.+|+.|++.|. +++++|.+
T Consensus 332 ~~ekL~~~kVLIvGa-GGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 332 QLERYSQLKVLLLGA-GTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred hHHHHhcCeEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 345677888999987 5899999999999998 89998864
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.09 Score=40.34 Aligned_cols=66 Identities=20% Similarity=0.190 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc--CCccEEE
Q 022369 76 GIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL--GPLHVLI 153 (298)
Q Consensus 76 GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~--g~idilV 153 (298)
|||...+..+...|++|+++++++++.+.+. ++ | --.+ +|-.+.+ +.+++++.. ..+|++|
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~-~~---------G-a~~~--~~~~~~~----~~~~i~~~~~~~~~d~vi 63 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAK-EL---------G-ADHV--IDYSDDD----FVEQIRELTGGRGVDVVI 63 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHH-HT---------T-ESEE--EETTTSS----HHHHHHHHTTTSSEEEEE
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHH-hh---------c-cccc--ccccccc----cccccccccccccceEEE
Confidence 6899999999999999999999988876553 22 1 1112 3444433 233333333 3699999
Q ss_pred EccCC
Q 022369 154 NNAGI 158 (298)
Q Consensus 154 nnag~ 158 (298)
+|+|.
T Consensus 64 d~~g~ 68 (130)
T PF00107_consen 64 DCVGS 68 (130)
T ss_dssp ESSSS
T ss_pred EecCc
Confidence 99994
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.1 Score=48.07 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=51.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH-HHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSL-DSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~-~~v~~~~~~ 141 (298)
.|.+++|.| ++++|.+++..+...|+ +|+.++++.++.+.+ +++. .. .+ .+..+. ++..+.+.+
T Consensus 190 ~g~~VlV~G-~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a-~~lG---------a~-~~--i~~~~~~~~~~~~v~~ 255 (373)
T cd08299 190 PGSTCAVFG-LGGVGLSAIMGCKAAGASRIIAVDINKDKFAKA-KELG---------AT-EC--INPQDYKKPIQEVLTE 255 (373)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHcC---------Cc-eE--ecccccchhHHHHHHH
Confidence 367899996 58999999999999999 899999988776655 2221 11 11 222221 122333333
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
... +.+|+++++.|.
T Consensus 256 ~~~--~~~d~vld~~g~ 270 (373)
T cd08299 256 MTD--GGVDFSFEVIGR 270 (373)
T ss_pred HhC--CCCeEEEECCCC
Confidence 333 369999999874
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically |
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.12 Score=47.18 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=34.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~ 105 (298)
.|+++||+| ++++|.+++..+...|+ +|+++++++++.+.+
T Consensus 177 ~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~ 218 (361)
T cd08231 177 AGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVIDGSPERLELA 218 (361)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 478999997 59999999988888899 999999887765543
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.1 Score=47.92 Aligned_cols=79 Identities=14% Similarity=0.143 Sum_probs=50.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH-HHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSL-DSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~-~~v~~~~~~ 141 (298)
.|.+++|.|+ +++|...+......|+ +|+.++++.++.+.+ +++. .. .+ .|..+. ..+.+.+.+
T Consensus 184 ~g~~vlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~-~~~g---------a~-~~--i~~~~~~~~~~~~~~~ 249 (365)
T cd08277 184 PGSTVAVFGL-GAVGLSAIMGAKIAGASRIIGVDINEDKFEKA-KEFG---------AT-DF--INPKDSDKPVSEVIRE 249 (365)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH-HHcC---------CC-cE--eccccccchHHHHHHH
Confidence 4789999974 8999999888888899 799999987776655 2221 11 11 222221 122233333
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
... +.+|++|++.|.
T Consensus 250 ~~~--~g~d~vid~~g~ 264 (365)
T cd08277 250 MTG--GGVDYSFECTGN 264 (365)
T ss_pred HhC--CCCCEEEECCCC
Confidence 333 369999999884
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.12 Score=46.28 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=71.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+.|+|+ |++|.++|..|+.++. .++++|.+++..+-...++.....-.+ .. ..+..| .+.++
T Consensus 2 KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~--~~-~~i~~~-~~y~~---------- 66 (313)
T COG0039 2 KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLG--SD-VKITGD-GDYED---------- 66 (313)
T ss_pred eEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhcc--Cc-eEEecC-CChhh----------
Confidence 5889999 9999999999988864 899999997777766666654322111 11 122222 22221
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCC
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSV 208 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~ 208 (298)
+..-|++|..||...... ++. .+.++.|. .+.+.+.+.+.+.. .+.++.++..
T Consensus 67 -~~~aDiVvitAG~prKpG---mtR---~DLl~~Na----~I~~~i~~~i~~~~~d~ivlVvtNP 120 (313)
T COG0039 67 -LKGADIVVITAGVPRKPG---MTR---LDLLEKNA----KIVKDIAKAIAKYAPDAIVLVVTNP 120 (313)
T ss_pred -hcCCCEEEEeCCCCCCCC---CCH---HHHHHhhH----HHHHHHHHHHHhhCCCeEEEEecCc
Confidence 236899999999864221 232 33455554 34455555555544 4666666653
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.094 Score=49.61 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=33.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~ 100 (298)
+.+|+++|+|.+ |+|.++|+.|+++|++|++.+.+..
T Consensus 3 ~~~~~~~v~G~g-~~G~~~a~~l~~~g~~v~~~d~~~~ 39 (445)
T PRK04308 3 FQNKKILVAGLG-GTGISMIAYLRKNGAEVAAYDAELK 39 (445)
T ss_pred CCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 567899999986 9999999999999999999987654
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.13 Score=47.60 Aligned_cols=79 Identities=14% Similarity=0.233 Sum_probs=51.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCE-EEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH-HHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAH-VVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSL-DSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~-Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~-~~v~~~~~~ 141 (298)
.|++++|.|+ +++|...+..+...|++ |+.+++++++.+.+ +++ |.. .+ .|..+. ++..+.+.+
T Consensus 193 ~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a-~~l---------Ga~-~~--i~~~~~~~~~~~~v~~ 258 (378)
T PLN02827 193 KGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVDINPEKAEKA-KTF---------GVT-DF--INPNDLSEPIQQVIKR 258 (378)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH-HHc---------CCc-EE--EcccccchHHHHHHHH
Confidence 4789999985 89999998888888985 77778887766544 222 111 11 233331 234444444
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
+.. +.+|++|.++|.
T Consensus 259 ~~~--~g~d~vid~~G~ 273 (378)
T PLN02827 259 MTG--GGADYSFECVGD 273 (378)
T ss_pred HhC--CCCCEEEECCCC
Confidence 433 369999999884
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.14 Score=45.93 Aligned_cols=116 Identities=11% Similarity=0.109 Sum_probs=68.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+.|+|++|.+|.++|..|+.+|. .++++|.+ +++...-+++.... .+....+. .+ +++ .+
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~------~~~i~~~~-~~-~~~-------y~ 64 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINT------PAKVTGYL-GP-EEL-------KK 64 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCC------cceEEEec-CC-Cch-------HH
Confidence 578999999999999999998884 89999998 44444444443210 11111110 00 001 11
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVM 209 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~ 209 (298)
.+.+-|++|.+||.... + .+ .=.+.++.|.- +.+...+.+.+. ..+.|+++|...
T Consensus 65 ~~~daDivvitaG~~~k-~--g~---tR~dll~~N~~----i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 65 ALKGADVVVIPAGVPRK-P--GM---TRDDLFNINAG----IVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred hcCCCCEEEEeCCCCCC-C--CC---CHHHHHHHHHH----HHHHHHHHHHHhCCCeEEEEccCch
Confidence 23478999999998532 1 12 23345555543 444445555443 357788888754
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08246 crotonyl_coA_red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.14 Score=47.33 Aligned_cols=42 Identities=19% Similarity=0.252 Sum_probs=36.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.|.+++|+|+++++|.+++..+...|+++++++++.++.+.+
T Consensus 193 ~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~ 234 (393)
T cd08246 193 PGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYC 234 (393)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH
Confidence 468999999999999999988888999999999887776655
|
Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.11 Score=47.21 Aligned_cols=79 Identities=24% Similarity=0.326 Sum_probs=51.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|++++|+|+ +++|...++.+...|+ +|++++++.++.+.+ .++ + ... ..|..+.+-.+++. +.
T Consensus 172 ~g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~-~~~-------g--a~~---~i~~~~~~~~~~l~-~~ 236 (351)
T cd08233 172 PGDTALVLGA-GPIGLLTILALKAAGASKIIVSEPSEARRELA-EEL-------G--ATI---VLDPTEVDVVAEVR-KL 236 (351)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHh-------C--CCE---EECCCccCHHHHHH-HH
Confidence 4789999985 7999999999999999 888888887776544 222 1 111 22444433222222 22
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
... +.+|+++++.|.
T Consensus 237 ~~~-~~~d~vid~~g~ 251 (351)
T cd08233 237 TGG-GGVDVSFDCAGV 251 (351)
T ss_pred hCC-CCCCEEEECCCC
Confidence 211 249999999884
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.095 Score=48.44 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=33.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.|++++|.|+ +++|...+......|++|++++++.++..+.
T Consensus 178 ~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~ 218 (375)
T PLN02178 178 SGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSEKEREA 218 (375)
T ss_pred CCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChHHhHHH
Confidence 4789999986 8999999998888899999998876553333
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.039 Score=49.11 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=39.3
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.++.||.++|.|.++-+|+.+|..|.++|++|.++.|+...+++.
T Consensus 155 i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~ 199 (301)
T PRK14194 155 GDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKAL 199 (301)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHH
Confidence 378899999999999999999999999999999998776544443
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.43 Score=43.31 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=35.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAA 102 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~ 102 (298)
..+.|+++.|.|. |.||.++|+.|...|++|+..+|+++..
T Consensus 142 ~~l~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~~~ 182 (330)
T PRK12480 142 KPVKNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPNKD 182 (330)
T ss_pred cccCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChhHh
Confidence 4689999999986 5699999999999999999999987543
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.24 Score=44.46 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=68.8
Q ss_pred EEEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+.|.|+ +.+|..+|..|+.+| ..|+++++++++.+..+.++.....-. ....... .+.+ .
T Consensus 2 kI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~---~~~~i~~---~d~~-------~--- 64 (308)
T cd05292 2 KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFV---KPVRIYA---GDYA-------D--- 64 (308)
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHcccccc---CCeEEee---CCHH-------H---
Confidence 3778888 789999999999999 589999999988775555554321110 0112221 2222 1
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcC
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNS 207 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS 207 (298)
+.+-|++|.++|..... . +...+.+..| ..+.+.+.+.+.+. ..|.|++++.
T Consensus 65 -l~~aDiViita~~~~~~---~---~~r~dl~~~n----~~i~~~~~~~l~~~~~~giiiv~tN 117 (308)
T cd05292 65 -CKGADVVVITAGANQKP---G---ETRLDLLKRN----VAIFKEIIPQILKYAPDAILLVVTN 117 (308)
T ss_pred -hCCCCEEEEccCCCCCC---C---CCHHHHHHHH----HHHHHHHHHHHHHHCCCeEEEEecC
Confidence 24789999999985321 1 1223344444 34555555555543 3577777765
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.095 Score=37.48 Aligned_cols=36 Identities=33% Similarity=0.579 Sum_probs=31.1
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEc
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAES-GAHVVMAVR 97 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r 97 (298)
.++.+++++|.|+ ++.|+.++..|.+. +.+|.+++|
T Consensus 19 ~~~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 19 KSLKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4577899999999 99999999999998 557777776
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.029 Score=44.55 Aligned_cols=42 Identities=33% Similarity=0.419 Sum_probs=35.3
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHH
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQE 111 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~ 111 (298)
|+.+|+++-+|+++|..|.++|.+|++. +.+..+.+..++..
T Consensus 1 V~L~G~~sKvaraiA~~LC~rgv~V~m~--~~~~y~~lk~~~~~ 42 (164)
T PF12076_consen 1 VFLTGNTSKVARAIALALCRRGVQVVML--SKERYESLKSEAPE 42 (164)
T ss_pred CeecccccHHHHHHHHHHHhcCCEEEEe--cHHHHHHHHHHcCH
Confidence 5789999999999999999999999998 66666666666543
|
This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases []. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.27 Score=44.05 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=67.6
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+.+.|.|+ |-+|..+|..++..|. +|+++|++++.++....++........ ..... .. -+|.+ .
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~--~~~~i-~~-~~d~~-------~--- 67 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEG--FDTKI-TG-TNDYE-------D--- 67 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcC--CCcEE-Ee-CCCHH-------H---
Confidence 46889998 8889999999999875 999999998887655544443211111 01111 11 12221 1
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVM 209 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~ 209 (298)
+.+-|++|.++|..... ..+ -.+.+.-| ..+.+.+.+.|.+.. .+.+|+++...
T Consensus 68 -~~~aDiVii~~~~p~~~---~~~---r~~~~~~n----~~i~~~i~~~i~~~~~~~~viv~tNP~ 122 (307)
T PRK06223 68 -IAGSDVVVITAGVPRKP---GMS---RDDLLGIN----AKIMKDVAEGIKKYAPDAIVIVVTNPV 122 (307)
T ss_pred -HCCCCEEEECCCCCCCc---CCC---HHHHHHHH----HHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 13679999999975321 122 12222333 345555555555433 35577766543
|
|
| >cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1 | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.13 Score=46.49 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=31.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN 98 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~ 98 (298)
.|.+++|+|+++++|.+++......|++|+.+.++
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~ 196 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST 196 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc
Confidence 47899999999999999999988999998888765
|
Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. |
| >PRK13771 putative alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.12 Score=46.37 Aligned_cols=42 Identities=24% Similarity=0.325 Sum_probs=37.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.+.+++|.|+++.+|.+++..+...|++|+.++++.++.+.+
T Consensus 162 ~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~ 203 (334)
T PRK13771 162 KGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIV 203 (334)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 367899999999999999999999999999999988877655
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.074 Score=50.24 Aligned_cols=41 Identities=32% Similarity=0.503 Sum_probs=35.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQ 107 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~ 107 (298)
++.|.||.|++|.++|+.|.+.|.+|++++|+++...+...
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~ 42 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAK 42 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHH
Confidence 58899999999999999999999999999999877654433
|
|
| >cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.14 Score=46.19 Aligned_cols=42 Identities=12% Similarity=0.094 Sum_probs=37.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.+.+++|.|+++++|.+++..+-..|++|+.+.+++++.+.+
T Consensus 165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~ 206 (341)
T cd08297 165 PGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELA 206 (341)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 368999999999999999999999999999999998766544
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.058 Score=39.19 Aligned_cols=41 Identities=29% Similarity=0.515 Sum_probs=34.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHcC---CEEEEE-EcCchHHHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESG---AHVVMA-VRNLKAANELIQKW 109 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G---~~Vil~-~r~~~~~~~~~~~~ 109 (298)
..+| |+|.+|.++++.|++.| .+|.++ +|++++.+++.++.
T Consensus 2 I~iI--G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~ 46 (96)
T PF03807_consen 2 IGII--GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY 46 (96)
T ss_dssp EEEE--STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC
T ss_pred EEEE--CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh
Confidence 3445 88899999999999999 899966 99999998887664
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.067 Score=47.24 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=36.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAA 102 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~ 102 (298)
++.||.|+|.|.|.-.|+-+|..|.++|++|.++......+
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~~l 194 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTKDL 194 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcHHH
Confidence 68899999999999999999999999999999886554333
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.13 Score=46.75 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=33.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCE-EEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAH-VVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~-Vil~~r~~~~~~~~ 105 (298)
.|++++|+| ++++|...++.+...|++ |+.+++++++.+.+
T Consensus 160 ~g~~vlV~G-~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~ 201 (347)
T PRK10309 160 EGKNVIIIG-AGTIGLLAIQCAVALGAKSVTAIDINSEKLALA 201 (347)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence 478999997 599999999888889996 67888888776643
|
|
| >TIGR01751 crot-CoA-red crotonyl-CoA reductase | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.11 Score=48.21 Aligned_cols=42 Identities=17% Similarity=0.234 Sum_probs=35.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.|.+++|+|+++++|.+++..+...|+++++++++.++.+.+
T Consensus 189 ~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~ 230 (398)
T TIGR01751 189 PGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYC 230 (398)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH
Confidence 468999999999999999988888999998888887665444
|
The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.19 Score=46.74 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=46.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC-------------------chHHHHHHHHHHHhhcCCCCCcc
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN-------------------LKAANELIQKWQEEWSGKGLPLN 121 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 121 (298)
.++..+|+|.|++ |+|..+|+.|+..|. +++++|.+ ..+.+.+.+.+++..+ ..+
T Consensus 35 ~L~~~~VlivG~G-GlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np----~v~ 109 (390)
T PRK07411 35 RLKAASVLCIGTG-GLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINP----YCQ 109 (390)
T ss_pred HHhcCcEEEECCC-HHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCC----CCe
Confidence 4556788888765 999999999999998 89998753 2355666666666543 346
Q ss_pred EEEEEcCCCC
Q 022369 122 IEAMELDLLS 131 (298)
Q Consensus 122 ~~~~~~D~s~ 131 (298)
+..+...++.
T Consensus 110 v~~~~~~~~~ 119 (390)
T PRK07411 110 VDLYETRLSS 119 (390)
T ss_pred EEEEecccCH
Confidence 6666655554
|
|
| >KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.2 Score=44.29 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=69.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHH-cCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAE-SGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~-~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+|++++|.||++-.|. +|-+||+ .|++||-.+-+.|+..-+..++-- . ...|.-++.++.+++++.
T Consensus 153 ~geTv~VSaAsGAvGq-l~GQ~Ak~~Gc~VVGsaGS~EKv~ll~~~~G~---------d---~afNYK~e~~~~~aL~r~ 219 (343)
T KOG1196|consen 153 KGETVFVSAASGAVGQ-LVGQFAKLMGCYVVGSAGSKEKVDLLKTKFGF---------D---DAFNYKEESDLSAALKRC 219 (343)
T ss_pred CCCEEEEeeccchhHH-HHHHHHHhcCCEEEEecCChhhhhhhHhccCC---------c---cceeccCccCHHHHHHHh
Confidence 4699999999999996 5556665 599999999898887776544311 1 123444554566666554
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM 209 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~ 209 (298)
-.+ .||+-+-|.|. .+..+++..|+. .|||+.-+-++
T Consensus 220 ~P~--GIDiYfeNVGG--------------------------~~lDavl~nM~~--~gri~~CG~IS 256 (343)
T KOG1196|consen 220 FPE--GIDIYFENVGG--------------------------KMLDAVLLNMNL--HGRIAVCGMIS 256 (343)
T ss_pred CCC--cceEEEeccCc--------------------------HHHHHHHHhhhh--ccceEeeeeeh
Confidence 332 69999999996 234455556665 56888866544
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.1 Score=45.98 Aligned_cols=41 Identities=24% Similarity=0.223 Sum_probs=33.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCE-EEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAH-VVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~-Vil~~r~~~~~~~~ 105 (298)
.|++++|.|+ +++|...++.+...|++ |+++++++++++..
T Consensus 120 ~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a 161 (280)
T TIGR03366 120 KGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPSPDRRELA 161 (280)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 5789999986 79999998888888996 88888887776543
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.1 Score=42.50 Aligned_cols=42 Identities=26% Similarity=0.329 Sum_probs=32.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
+....++||| ++-.|...++.|...|++|+..+.+.+.+++.
T Consensus 18 ~~p~~vvv~G-~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~ 59 (168)
T PF01262_consen 18 VPPAKVVVTG-AGRVGQGAAEIAKGLGAEVVVPDERPERLRQL 59 (168)
T ss_dssp E-T-EEEEES-TSHHHHHHHHHHHHTT-EEEEEESSHHHHHHH
T ss_pred CCCeEEEEEC-CCHHHHHHHHHHhHCCCEEEeccCCHHHHHhh
Confidence 3446788998 56789999999999999999999997776654
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >smart00829 PKS_ER Enoylreductase | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.12 Score=44.67 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=36.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.|.+++|.|+++++|..++......|++|+.++++.++.+.+
T Consensus 104 ~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~ 145 (288)
T smart00829 104 PGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFL 145 (288)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 467899999999999999988888899999999998876654
|
Enoylreductase in Polyketide synthases. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.23 Score=46.20 Aligned_cols=35 Identities=20% Similarity=0.357 Sum_probs=29.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN 98 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~ 98 (298)
+++..|+|.|++ |+|..+|+.|+..|. ++.++|.+
T Consensus 40 L~~~~VlviG~G-GlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 40 LKNARVLVIGAG-GLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HhcCCEEEECCC-HHHHHHHHHHHHcCCCeEEEECCC
Confidence 445778888765 999999999999998 88888753
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.22 Score=44.23 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=48.6
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc-------------------hHHHHHHHHHHHhhcCCCCCccEEEEEc
Q 022369 68 CIVTGSTSGIGREIARQLAESGA-HVVMAVRNL-------------------KAANELIQKWQEEWSGKGLPLNIEAMEL 127 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (298)
|+|.| .||+|-++++.|+..|. ++.++|.+. .+.+.+.+.+++..+ ..++..+..
T Consensus 2 VlVVG-aGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np----~v~I~~~~~ 76 (291)
T cd01488 2 ILVIG-AGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVP----GVNVTPHFG 76 (291)
T ss_pred EEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCC----CCEEEEEec
Confidence 56776 66999999999999998 888887432 344444555555433 246777777
Q ss_pred CCCCHHHHHHHHHHHhcccCCccEEEEcc
Q 022369 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNA 156 (298)
Q Consensus 128 D~s~~~~v~~~~~~~~~~~g~idilVnna 156 (298)
++.+.+ .++ +.+.|++|++.
T Consensus 77 ~i~~~~--~~f-------~~~fdvVi~al 96 (291)
T cd01488 77 KIQDKD--EEF-------YRQFNIIICGL 96 (291)
T ss_pred ccCchh--HHH-------hcCCCEEEECC
Confidence 776532 111 23678777753
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.17 Score=45.14 Aligned_cols=41 Identities=34% Similarity=0.394 Sum_probs=35.6
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
+.+++|.|+++++|.+++......|++|++++++.++.+.+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~ 187 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYL 187 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 46899999999999999988888899999999998766554
|
Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so |
| >PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.13 Score=46.21 Aligned_cols=42 Identities=17% Similarity=0.230 Sum_probs=36.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.|.+++|.||++.+|.++++.+-..|++|+.++++.++.+.+
T Consensus 140 ~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~ 181 (327)
T PRK10754 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRA 181 (327)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 468999999999999999988888999999999887765544
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.21 Score=51.26 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=55.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc-------------------hHHHHHHHHHHHhhcCCCCCcc
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL-------------------KAANELIQKWQEEWSGKGLPLN 121 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 121 (298)
.+++.+|+|.| .||+|..+|+.|+..|. ++.++|.+. .|.+.+.+.+++..+ ..+
T Consensus 329 kL~~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP----~v~ 403 (989)
T PRK14852 329 RLLRSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNP----FLD 403 (989)
T ss_pred HHhcCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCC----CCe
Confidence 45667899998 56999999999999998 888887532 355555555555433 346
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhcccCCccEEEEccC
Q 022369 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG 157 (298)
Q Consensus 122 ~~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag 157 (298)
+..+...++. +.+.++++ ..|++|.+..
T Consensus 404 I~~~~~~I~~-en~~~fl~-------~~DiVVDa~D 431 (989)
T PRK14852 404 IRSFPEGVAA-ETIDAFLK-------DVDLLVDGID 431 (989)
T ss_pred EEEEecCCCH-HHHHHHhh-------CCCEEEECCC
Confidence 7777666643 44444433 4677776543
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.084 Score=43.38 Aligned_cols=47 Identities=28% Similarity=0.345 Sum_probs=38.9
Q ss_pred CCCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHH
Q 022369 56 NPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAAN 103 (298)
Q Consensus 56 ~~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~ 103 (298)
......++.|+++.|.|. |.||+++|+.+...|++|+.++|+.....
T Consensus 27 ~~~~~~~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEE 73 (178)
T ss_dssp TTTTBS-STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred cCCCccccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhh
Confidence 344556889999999976 78999999999999999999999987655
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd08290 ETR 2-enoyl thioester reductase (ETR) | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.19 Score=45.37 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=33.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~ 100 (298)
.|++++|.|+++++|.++++.+...|++|+.+.++.+
T Consensus 146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~ 182 (341)
T cd08290 146 PGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRP 182 (341)
T ss_pred CCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCC
Confidence 4789999999999999999999999999998888764
|
2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.12 Score=41.70 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=31.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR 97 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r 97 (298)
.+++|+.+||.||+ .+|...++.|.+.|++|++++.
T Consensus 9 l~l~~~~vlVvGGG-~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 9 FNLHNKVVVIIGGG-KIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred EEcCCCEEEEECCC-HHHHHHHHHHHhCCCEEEEEcC
Confidence 37889999999975 6999999999999999999864
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.17 Score=45.58 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=35.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.+++++|.| ++++|.+++..+...|++|+.+++++++.+.+
T Consensus 163 ~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~ 203 (333)
T cd08296 163 PGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRGSDKADLA 203 (333)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Confidence 468999999 79999999988888999999999987776554
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 298 | ||||
| 3rd5_A | 291 | Crystal Structure Of A Putative Uncharacterized Pro | 1e-29 | ||
| 3ftp_A | 270 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 5e-14 | ||
| 2pnf_A | 248 | Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl- | 9e-13 | ||
| 2hq1_A | 247 | Crystal Structure Of Orf 1438 A Putative GlucoseRIB | 2e-12 | ||
| 3rsh_A | 251 | Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reduc | 5e-12 | ||
| 3tzh_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 7e-12 | ||
| 3tzc_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 1e-11 | ||
| 3tzk_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 3e-11 | ||
| 3u09_A | 251 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 4e-11 | ||
| 1ae1_A | 273 | Tropinone Reductase-I Complex With Nadp Length = 27 | 4e-11 | ||
| 1vl8_A | 267 | Crystal Structure Of Gluconate 5-dehydrogenase (tm0 | 5e-11 | ||
| 1i01_A | 244 | Crystal Structure Of Beta-Ketoacyl [acyl Carrier Pr | 6e-11 | ||
| 2b4q_A | 276 | Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex | 8e-11 | ||
| 3u0b_A | 454 | Crystal Structure Of An Oxidoreductase From Mycobac | 1e-10 | ||
| 1q7c_A | 244 | The Structure Of Betaketoacyl-[acp] Reductase Y151f | 2e-10 | ||
| 2ew8_A | 249 | Crystal Structure Of The (s)-specific 1-phenylethan | 2e-10 | ||
| 3grp_A | 266 | 2.1 Angstrom Crystal Structure Of 3-Ketoacyl-(Acyl- | 2e-10 | ||
| 1xg5_A | 279 | Structure Of Human Putative Dehydrogenase Mgc4172 I | 2e-10 | ||
| 3csd_B | 281 | Actinorhodin Polyketide Ketoreductase Mutant P94l B | 3e-10 | ||
| 2ae2_A | 260 | Tropinone Reductase-Ii Complexed With Nadp+ And Pse | 3e-10 | ||
| 1ipe_A | 259 | Tropinone Reductase-Ii Complexed With Nadph Length | 3e-10 | ||
| 2rhr_B | 277 | P94l Actinorhodin Ketordeuctase Mutant, With Nadph | 4e-10 | ||
| 1cyd_A | 244 | Carbonyl Reductase Complexed With Nadph And 2-Propa | 4e-10 | ||
| 4hp8_A | 247 | Crystal Structure Of A Putative 2-Deoxy-D-Gluconate | 4e-10 | ||
| 3q6i_A | 446 | Crystal Structure Of Fabg4 And Coenzyme Binary Comp | 5e-10 | ||
| 3m1l_A | 432 | Crystal Strucutre Of A C-Terminal Trunacted Mutant | 5e-10 | ||
| 4fw8_A | 454 | Crystal Structure Of Fabg4 Complexed With Coenzyme | 5e-10 | ||
| 3v1t_C | 462 | Crystal Structure Of A Putative Ketoacyl Reductase | 6e-10 | ||
| 3lls_A | 475 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 6e-10 | ||
| 2c07_A | 285 | Oxoacyl-Acp Reductase Of Plasmodium Falciparum Leng | 6e-10 | ||
| 3m1a_A | 281 | The Crystal Structure Of A Short-Chain Dehydrogenas | 7e-10 | ||
| 4dc1_A | 281 | Crystal Structure Of Y202f Actinorhodin Polyketide | 1e-09 | ||
| 1w4z_A | 281 | Structure Of Actinorhodin Polyketide (Actiii) Reduc | 1e-09 | ||
| 4dbz_A | 281 | Crystal Structure Of V151l Actinorhodin Polyketide | 1e-09 | ||
| 1x7g_A | 261 | Actinorhodin Polyketide Ketoreductase, Act Kr, With | 1e-09 | ||
| 1uzm_A | 247 | Maba From Mycobacterium Tuberculosis Length = 247 | 1e-09 | ||
| 2rh4_A | 277 | Actinorhodin Ketoreductase, Actkr, With Nadph And I | 1e-09 | ||
| 1uzl_A | 247 | Maba From Mycobacterium Tuberculosis Length = 247 | 1e-09 | ||
| 3tfo_A | 264 | Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Car | 2e-09 | ||
| 2ntn_A | 267 | Crystal Structure Of Maba-c60v/g139a/s144l Length = | 2e-09 | ||
| 3o4r_A | 261 | Crystal Structure Of Human DehydrogenaseREDUCTASE ( | 2e-09 | ||
| 1edo_A | 244 | The X-Ray Structure Of Beta-Keto Acyl Carrier Prote | 2e-09 | ||
| 4dc0_A | 281 | Crystal Structure Of F189w Actinorhodin Polyketide | 3e-09 | ||
| 3uf0_A | 273 | Crystal Structure Of A Putative Nad(P) Dependent Gl | 3e-09 | ||
| 3rkr_A | 262 | Crystal Structure Of A Metagenomic Short-Chain Oxid | 3e-09 | ||
| 3gk3_A | 269 | Crystal Structure Of Acetoacetyl-Coa Reductase From | 4e-09 | ||
| 3op4_A | 248 | Crystal Structure Of Putative 3-Ketoacyl-(Acyl-Carr | 5e-09 | ||
| 1yb1_A | 272 | Crystal Structure Of Human 17-Beta-Hydroxysteroid D | 8e-09 | ||
| 3o26_A | 311 | The Structure Of Salutaridine Reductase From Papave | 9e-09 | ||
| 4dml_A | 269 | 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Syn | 2e-08 | ||
| 4dqx_A | 277 | Crystal Structure Of A Short Chain Dehydrogenase Fr | 2e-08 | ||
| 4eso_A | 255 | Crystal Structure Of A Putative Oxidoreductase Prot | 3e-08 | ||
| 3vc7_A | 254 | Crystal Structure Of A Putative Oxidoreductase From | 3e-08 | ||
| 2uvd_A | 246 | The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier | 3e-08 | ||
| 3cxr_A | 291 | Crystal Structure Of Gluconate 5-Dehydrogase From S | 4e-08 | ||
| 1k2w_A | 256 | Crystal Structure Of Sorbitol Dehydrogenase From R. | 4e-08 | ||
| 3sj7_A | 252 | Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) F | 4e-08 | ||
| 2et6_A | 604 | (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candid | 4e-08 | ||
| 1xse_A | 295 | Crystal Structure Of Guinea Pig 11beta-Hydroxystero | 5e-08 | ||
| 2zat_A | 260 | Crystal Structure Of A Mammalian Reductase Length = | 6e-08 | ||
| 3lz6_A | 263 | Guinea Pig 11beta Hydroxysteroid Dehydrogenase With | 6e-08 | ||
| 3g49_A | 277 | N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of 11b- | 6e-08 | ||
| 2cf2_E | 226 | Architecture Of Mammalian Fatty Acid Synthase Lengt | 6e-08 | ||
| 3icc_A | 255 | Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Car | 7e-08 | ||
| 3dwf_A | 276 | Crystal Structure Of The Guinea Pig 11beta-Hydroxys | 7e-08 | ||
| 4afn_A | 269 | Crystal Structure Of 3-ketoacyl-(acyl-carrier-prote | 8e-08 | ||
| 3ai1_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 1e-07 | ||
| 3ezl_A | 256 | Crystal Structure Of Acetyacetyl-Coa Reductase From | 1e-07 | ||
| 2ph3_A | 245 | Crystal Structure Of 3-oxoacyl-[acyl Carrier Protei | 1e-07 | ||
| 1xkq_A | 280 | Crystal Structure Of Short-Chain DehydrogenaseREDUC | 2e-07 | ||
| 3enn_A | 249 | 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGEN | 2e-07 | ||
| 1wma_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Hyd | 2e-07 | ||
| 3emk_A | 246 | 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGEN | 2e-07 | ||
| 3sju_A | 279 | Hedamycin Polyketide Ketoreductase Bound To Nadph L | 2e-07 | ||
| 2pfg_A | 276 | Crystal Structure Of Human Cbr1 In Complex With Big | 2e-07 | ||
| 3rku_A | 287 | Substrate Fingerprint And The Structure Of Nadp+ De | 3e-07 | ||
| 3ai3_A | 263 | The Crystal Structure Of L-Sorbose Reductase From G | 3e-07 | ||
| 3osu_A | 246 | Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Pro | 3e-07 | ||
| 2nwq_A | 272 | Short Chain Dehydrogenase From Pseudomonas Aerugino | 4e-07 | ||
| 1ahi_A | 255 | 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With | 4e-07 | ||
| 3lyl_A | 247 | Structure Of 3-Oxoacyl-Acylcarrier Protein Reductas | 5e-07 | ||
| 2qq5_A | 260 | Crystal Structure Of Human Sdr Family Member 1 Leng | 6e-07 | ||
| 2rbe_A | 275 | The Discovery Of 2-Anilinothiazolones As 11beta-Hsd | 7e-07 | ||
| 2irw_A | 264 | Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) W | 7e-07 | ||
| 4bb5_A | 292 | Free-Wilson And Structural Approaches To Co-Optimis | 8e-07 | ||
| 3d5q_A | 272 | Crystal Structure Of 11b-Hsd1 In Complex With Triaz | 8e-07 | ||
| 2bel_A | 283 | Structure Of Human 11-Beta-Hydroxysteroid Dehydroge | 8e-07 | ||
| 4bb6_A | 292 | Free-Wilson And Structural Approaches To Co-Optimis | 8e-07 | ||
| 1xu7_A | 286 | Crystal Structure Of The Interface Open Conformatio | 8e-07 | ||
| 2ilt_A | 275 | Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) W | 8e-07 | ||
| 2hrb_A | 274 | Crystal Structure Of Human Carbonyl Reductase 3, Co | 8e-07 | ||
| 1pr9_A | 244 | Human L-Xylulose Reductase Holoenzyme Length = 244 | 8e-07 | ||
| 3d3w_B | 245 | Structure Of L-Xylulose Reductase With Bound Coenzy | 8e-07 | ||
| 3pdj_A | 273 | Crystal Structure Of Human 11-Beta-Hydroxysteroid D | 9e-07 | ||
| 4b79_A | 242 | The Aeropath Project And Pseudomonas Aeruginosa Hig | 9e-07 | ||
| 3tox_A | 280 | Crystal Structure Of A Short Chain Dehydrogenase In | 9e-07 | ||
| 2dtd_A | 264 | Structure Of Thermoplasma Acidophilum Aldohexose De | 9e-07 | ||
| 3d3w_A | 244 | Structure Of L-Xylulose Reductase With Bound Coenzy | 9e-07 | ||
| 2zk7_A | 257 | Structure Of A C-Terminal Deletion Mutant Of Thermo | 9e-07 | ||
| 3p19_A | 266 | Improved Nadph-Dependent Blue Fluorescent Protein L | 1e-06 | ||
| 3ak4_A | 263 | Crystal Structure Of Nadh-Dependent Quinuclidinone | 1e-06 | ||
| 3ch6_A | 286 | Crystal Structure Of 11beta-Hsd1 Double Mutant (L26 | 1e-06 | ||
| 2pd6_A | 264 | Structure Of Human Hydroxysteroid Dehydrogenase Typ | 1e-06 | ||
| 4hfr_A | 272 | Human 11beta-Hydroxysteroid Dehydrogenase Type 1 In | 1e-06 | ||
| 3rih_A | 293 | Crystal Structure Of A Putative Short Chain Dehydro | 1e-06 | ||
| 3r1i_A | 276 | Crystal Structure Of A Short-Chain Type Dehydrogena | 2e-06 | ||
| 1zjy_A | 251 | Structure Of R-Specific Alcohol Dehydrogenase (Muta | 2e-06 | ||
| 1nxq_A | 251 | Crystal Structure Of R-Alcohol Dehydrogenase (Radh) | 2e-06 | ||
| 1yxm_A | 303 | Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa | 2e-06 | ||
| 3lf1_A | 265 | Apo Structure Of The Short Chain Oxidoreductase Q9h | 4e-06 | ||
| 1n5d_A | 288 | Crystal Structure Of Porcine Testicular Carbonyl Re | 4e-06 | ||
| 3v2h_A | 281 | The Crystal Structure Of D-Beta-Hydroxybutyrate Deh | 5e-06 | ||
| 2d1y_A | 256 | Crystal Structure Of Tt0321 From Thermus Thermophil | 5e-06 | ||
| 2yz7_A | 260 | X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase F | 6e-06 | ||
| 3u9l_A | 324 | The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Pr | 6e-06 | ||
| 2bd0_A | 244 | Chlorobium Tepidum Sepiapterin Reductase Complexed | 7e-06 | ||
| 3is3_A | 270 | Crystal Structure Of 17beta-Hydroxysteroid Dehydrog | 7e-06 | ||
| 1xq1_A | 266 | X-Ray Structure Of Putative Tropinone Reducatse Fro | 8e-06 | ||
| 4iqg_C | 271 | Crystal Structure Of Bpro0239 Oxidoreductase From P | 1e-05 | ||
| 3v2g_A | 271 | Crystal Structure Of A DehydrogenaseREDUCTASE FROM | 1e-05 | ||
| 1doh_A | 283 | Structure Of Trihydroxynaphthalene Reductase In Com | 1e-05 | ||
| 1ybv_A | 283 | Structure Of Trihydroxynaphthalene Reductase In Com | 1e-05 | ||
| 2q2q_A | 255 | Structure Of D-3-Hydroxybutyrate Dehydrogenase From | 1e-05 | ||
| 1iol_A | 327 | Estrogenic 17-beta Hydroxysteroid Dehydrogenase Com | 2e-05 | ||
| 4e3z_A | 272 | Crystal Structure Of A Oxidoreductase From Rhizobiu | 2e-05 | ||
| 2jap_A | 247 | Clavulanic Acid Dehydrogenase: Structural And Bioch | 2e-05 | ||
| 1fdw_A | 327 | Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 M | 2e-05 | ||
| 1xhl_A | 297 | Crystal Structure Of Putative Tropinone Reductase-I | 2e-05 | ||
| 1fdu_A | 327 | Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 M | 2e-05 | ||
| 3itd_A | 270 | Crystal Structure Of An Inactive 17beta-Hydroxyster | 2e-05 | ||
| 1fds_A | 327 | Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C | 2e-05 | ||
| 1a27_A | 289 | Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C | 2e-05 | ||
| 2ehd_A | 234 | Crystal Structure Analysis Of Oxidoreductase Length | 2e-05 | ||
| 1equ_A | 327 | Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin | 3e-05 | ||
| 4fn4_A | 254 | Short-chain Nad(h)-dependent Dehydrogenase/reductas | 3e-05 | ||
| 3asu_A | 248 | Crystal Structure Of Serine Dehydrogenase From Esch | 3e-05 | ||
| 3ioy_A | 319 | Structure Of Putative Short-Chain Dehydrogenase (Sa | 4e-05 | ||
| 3f9i_A | 249 | Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Prote | 4e-05 | ||
| 3kvo_A | 346 | Crystal Structure Of The Catalytic Domain Of Human | 4e-05 | ||
| 4e6p_A | 259 | Crystal Structure Of A Probable Sorbitol Dehydrogen | 5e-05 | ||
| 3tjr_A | 301 | Crystal Structure Of A Rv0851c Ortholog Short Chain | 5e-05 | ||
| 2nm0_A | 253 | Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl | 5e-05 | ||
| 1spx_A | 278 | Crystal Structure Of Glucose Dehydrogenase Of Caeno | 6e-05 | ||
| 3tn7_A | 257 | Crystal Structure Of Short-Chain Alcohol Dehydrogen | 7e-05 | ||
| 3l77_A | 235 | X-Ray Structure Alcohol Dehydrogenase From Archaeon | 7e-05 | ||
| 4iiu_A | 267 | Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Car | 8e-05 | ||
| 3pk0_A | 262 | Crystal Structure Of Short-Chain DehydrogenaseREDUC | 1e-04 | ||
| 2jah_A | 247 | Biochemical And Structural Analysis Of The Clavulan | 1e-04 | ||
| 3r3s_A | 294 | Structure Of The Ygha Oxidoreductase From Salmonell | 1e-04 | ||
| 3t4x_A | 267 | Short Chain DehydrogenaseREDUCTASE FAMILY OXIDOREDU | 2e-04 | ||
| 4iin_A | 271 | Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Car | 2e-04 | ||
| 3i4f_A | 264 | Structure Of Putative 3-oxoacyl-reductase From Baci | 2e-04 | ||
| 3gmd_A | 264 | Structure-Based Design Of 7-Azaindole-Pyrrolidines | 2e-04 | ||
| 1h5q_A | 265 | Mannitol Dehydrogenase From Agaricus Bisporus Lengt | 2e-04 | ||
| 3u5t_A | 267 | The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Pr | 2e-04 | ||
| 3gvc_A | 277 | Crystal Structure Of Probable Short-Chain Dehydroge | 2e-04 | ||
| 1y5m_A | 276 | The Crystal Structure Of Murine 11b-Hydroxysteroid | 4e-04 | ||
| 3nyw_A | 250 | Crystal Structure Of A Betaketoacyl-[acp] Reductase | 4e-04 | ||
| 3ucx_A | 264 | The Structure Of A Short Chain Dehydrogenase From M | 4e-04 | ||
| 1nff_A | 260 | Crystal Structure Of Rv2002 Gene Product From Mycob | 4e-04 | ||
| 1nfr_A | 260 | Rv2002 Gene Product From Mycobacterium Tuberculosis | 5e-04 | ||
| 1zem_A | 262 | Crystal Structure Of Nad+-Bound Xylitol Dehydrogena | 5e-04 | ||
| 3ijr_A | 291 | 2.05 Angstrom Resolution Crystal Structure Of A Sho | 6e-04 | ||
| 3ay6_A | 269 | Crystal Structure Of Bacillus Megaterium Glucose De | 6e-04 | ||
| 3ay7_A | 269 | Crystal Structure Of Bacillus Megaterium Glucose De | 6e-04 | ||
| 3i3o_A | 291 | 2.06 Angstrom Resolution Crystal Structure Of A Sho | 6e-04 | ||
| 3aus_A | 269 | Crystal Structure Of Bacillus Megaterium Glucose De | 6e-04 | ||
| 3qiv_A | 253 | Crystal Structure Of A Putative Short-Chain Dehydro | 7e-04 | ||
| 2wdz_A | 254 | Crystal Structure Of The Short Chain Dehydrogenase | 9e-04 |
| >pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein From Mycobacterium Paratuberculosis Length = 291 | Back alignment and structure |
|
| >pdb|3FTP|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Burkholderia Pseudomallei At 2.05 A Resolution Length = 270 | Back alignment and structure |
|
| >pdb|2PNF|A Chain A, Structure Of Aquifex Aeolicus Fabg 3-oxoacyl-(acyl-carrier Protein) Reductase Length = 248 | Back alignment and structure |
|
| >pdb|2HQ1|A Chain A, Crystal Structure Of Orf 1438 A Putative GlucoseRIBITOL Dehydrogenase From Clostridium Thermocellum Length = 247 | Back alignment and structure |
|
| >pdb|3RSH|A Chain A, Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)reductase (Fabg) From Vibrio Cholerae O1 Complexed With Nadp+ (Space Group P62) Length = 251 | Back alignment and structure |
|
| >pdb|3TZH|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(F187a) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|3TZC|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(Y155f) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|3TZK|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92a) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|3U09|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase (Fabg)(G92d) From Vibrio Cholerae Length = 251 | Back alignment and structure |
|
| >pdb|1AE1|A Chain A, Tropinone Reductase-I Complex With Nadp Length = 273 | Back alignment and structure |
|
| >pdb|1VL8|A Chain A, Crystal Structure Of Gluconate 5-dehydrogenase (tm0441) From Thermotoga Maritima At 2.07 A Resolution Length = 267 | Back alignment and structure |
|
| >pdb|1I01|A Chain A, Crystal Structure Of Beta-Ketoacyl [acyl Carrier Protein] Reductase From E. Coli. Length = 244 | Back alignment and structure |
|
| >pdb|2B4Q|A Chain A, Pseudomonas Aeruginosa RhlgNADP ACTIVE-Site Complex Length = 276 | Back alignment and structure |
|
| >pdb|3U0B|A Chain A, Crystal Structure Of An Oxidoreductase From Mycobacterium Smegmatis Length = 454 | Back alignment and structure |
|
| >pdb|1Q7C|A Chain A, The Structure Of Betaketoacyl-[acp] Reductase Y151f Mutant In Complex With Nadph Fragment Length = 244 | Back alignment and structure |
|
| >pdb|2EW8|A Chain A, Crystal Structure Of The (s)-specific 1-phenylethanol Dehydrogenase Of The Denitrifying Bacterium Strain Ebn1 Length = 249 | Back alignment and structure |
|
| >pdb|3GRP|A Chain A, 2.1 Angstrom Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Bartonella Henselae Length = 266 | Back alignment and structure |
|
| >pdb|1XG5|A Chain A, Structure Of Human Putative Dehydrogenase Mgc4172 In Complex With Nadp Length = 279 | Back alignment and structure |
|
| >pdb|3CSD|B Chain B, Actinorhodin Polyketide Ketoreductase Mutant P94l Bound To Nadph And The Inhibitor Emodin Length = 281 | Back alignment and structure |
|
| >pdb|2AE2|A Chain A, Tropinone Reductase-Ii Complexed With Nadp+ And Pseudotropine Length = 260 | Back alignment and structure |
|
| >pdb|1IPE|A Chain A, Tropinone Reductase-Ii Complexed With Nadph Length = 259 | Back alignment and structure |
|
| >pdb|2RHR|B Chain B, P94l Actinorhodin Ketordeuctase Mutant, With Nadph And Inhibitor Emodin Length = 277 | Back alignment and structure |
|
| >pdb|1CYD|A Chain A, Carbonyl Reductase Complexed With Nadph And 2-Propanol Length = 244 | Back alignment and structure |
|
| >pdb|4HP8|A Chain A, Crystal Structure Of A Putative 2-Deoxy-D-Gluconate 3-Dehydrogenase From Agrobacterium Tumefaciens (Target Efi-506435) With Bound Nadp Length = 247 | Back alignment and structure |
|
| >pdb|3Q6I|A Chain A, Crystal Structure Of Fabg4 And Coenzyme Binary Complex Length = 446 | Back alignment and structure |
|
| >pdb|3M1L|A Chain A, Crystal Strucutre Of A C-Terminal Trunacted Mutant Of A Putative Ketoacyl Reductase (Fabg4) From Mycobacterium Tuberculosis H37rv At 2.5 Angstrom Resolution Length = 432 | Back alignment and structure |
|
| >pdb|4FW8|A Chain A, Crystal Structure Of Fabg4 Complexed With Coenzyme Nadh Length = 454 | Back alignment and structure |
|
| >pdb|3V1T|C Chain C, Crystal Structure Of A Putative Ketoacyl Reductase (Fabg4) From Mycobacterium Tuberculosis H37rv At 1.9 Angstrom Resolution Length = 462 | Back alignment and structure |
|
| >pdb|3LLS|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Mycobacterium Tuberculosis Length = 475 | Back alignment and structure |
|
| >pdb|2C07|A Chain A, Oxoacyl-Acp Reductase Of Plasmodium Falciparum Length = 285 | Back alignment and structure |
|
| >pdb|3M1A|A Chain A, The Crystal Structure Of A Short-Chain Dehydrogenase From Streptomyces Avermitilis To 2a Length = 281 | Back alignment and structure |
|
| >pdb|4DC1|A Chain A, Crystal Structure Of Y202f Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|1W4Z|A Chain A, Structure Of Actinorhodin Polyketide (Actiii) Reductase Length = 281 | Back alignment and structure |
|
| >pdb|4DBZ|A Chain A, Crystal Structure Of V151l Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|1X7G|A Chain A, Actinorhodin Polyketide Ketoreductase, Act Kr, With Nadp Bound Length = 261 | Back alignment and structure |
|
| >pdb|1UZM|A Chain A, Maba From Mycobacterium Tuberculosis Length = 247 | Back alignment and structure |
|
| >pdb|2RH4|A Chain A, Actinorhodin Ketoreductase, Actkr, With Nadph And Inhibitor Emodin Length = 277 | Back alignment and structure |
|
| >pdb|1UZL|A Chain A, Maba From Mycobacterium Tuberculosis Length = 247 | Back alignment and structure |
|
| >pdb|3TFO|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl-Carrier-Protein) Reductase From Sinorhizobium Meliloti Length = 264 | Back alignment and structure |
|
| >pdb|2NTN|A Chain A, Crystal Structure Of Maba-c60v/g139a/s144l Length = 267 | Back alignment and structure |
|
| >pdb|3O4R|A Chain A, Crystal Structure Of Human DehydrogenaseREDUCTASE (SDR FAMILY) MEMBER 4 (Dhrs4) Length = 261 | Back alignment and structure |
|
| >pdb|1EDO|A Chain A, The X-Ray Structure Of Beta-Keto Acyl Carrier Protein Reductase From Brassica Napus Complexed With Nadp+ Length = 244 | Back alignment and structure |
|
| >pdb|4DC0|A Chain A, Crystal Structure Of F189w Actinorhodin Polyketide Ketoreductase With Nadph Length = 281 | Back alignment and structure |
|
| >pdb|3UF0|A Chain A, Crystal Structure Of A Putative Nad(P) Dependent Gluconate 5- Dehydrogenase From Beutenbergia Cavernae(Efi Target Efi-502044) With Bound Nadp (Low Occupancy) Length = 273 | Back alignment and structure |
|
| >pdb|3RKR|A Chain A, Crystal Structure Of A Metagenomic Short-Chain Oxidoreductase (Sdr) In Complex With Nadp Length = 262 | Back alignment and structure |
|
| >pdb|3GK3|A Chain A, Crystal Structure Of Acetoacetyl-Coa Reductase From Burkholderia Pseudomallei 1710b Length = 269 | Back alignment and structure |
|
| >pdb|3OP4|A Chain A, Crystal Structure Of Putative 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase From Vibrio Cholerae O1 Biovar Eltor Str. N16961 In Complex With Nadp+ Length = 248 | Back alignment and structure |
|
| >pdb|1YB1|A Chain A, Crystal Structure Of Human 17-Beta-Hydroxysteroid Dehydrogenase Type Xi Length = 272 | Back alignment and structure |
|
| >pdb|3O26|A Chain A, The Structure Of Salutaridine Reductase From Papaver Somniferum Length = 311 | Back alignment and structure |
|
| >pdb|4DML|A Chain A, 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Synechococcus Elongatus Pcc 7942 Length = 269 | Back alignment and structure |
|
| >pdb|4DQX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase From Rhizobium Etli Cfn 42 Length = 277 | Back alignment and structure |
|
| >pdb|4ESO|A Chain A, Crystal Structure Of A Putative Oxidoreductase Protein From Sinorhizobium Meliloti 1021 In Complex With Nadp Length = 255 | Back alignment and structure |
|
| >pdb|3VC7|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Sinorhizobium Meliloti 1021 Length = 254 | Back alignment and structure |
|
| >pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis (Ba3989) Length = 246 | Back alignment and structure |
|
| >pdb|3CXR|A Chain A, Crystal Structure Of Gluconate 5-Dehydrogase From Streptococcus Suis Type 2 Length = 291 | Back alignment and structure |
|
| >pdb|1K2W|A Chain A, Crystal Structure Of Sorbitol Dehydrogenase From R. Sphaeroides Length = 256 | Back alignment and structure |
|
| >pdb|3SJ7|A Chain A, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From Staphylococcus Aureus Complex With Nadph Length = 252 | Back alignment and structure |
|
| >pdb|2ET6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Domain Of Candida Tropicalis Peroxisomal Multifunctional Enzyme Type 2 Length = 604 | Back alignment and structure |
|
| >pdb|1XSE|A Chain A, Crystal Structure Of Guinea Pig 11beta-Hydroxysteroid Dehydrogenase Type 1 Length = 295 | Back alignment and structure |
|
| >pdb|2ZAT|A Chain A, Crystal Structure Of A Mammalian Reductase Length = 260 | Back alignment and structure |
|
| >pdb|3LZ6|A Chain A, Guinea Pig 11beta Hydroxysteroid Dehydrogenase With Pf-877423 Length = 263 | Back alignment and structure |
|
| >pdb|3G49|A Chain A, N-(Pyridin-2-Yl) Arylsulfonamide Inhibitors Of 11b-Hydroxysteroid Dehydrogenase Type 1: Discovery Of Pf-915275 Length = 277 | Back alignment and structure |
|
| >pdb|2CF2|E Chain E, Architecture Of Mammalian Fatty Acid Synthase Length = 226 | Back alignment and structure |
|
| >pdb|3ICC|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-(Acyl Carrier Protein) Reductase From Bacillus Anthracis At 1.87 A Resolution Length = 255 | Back alignment and structure |
|
| >pdb|3DWF|A Chain A, Crystal Structure Of The Guinea Pig 11beta-Hydroxysteroid Dehydrogenase Type 1 Mutant F278e Length = 276 | Back alignment and structure |
|
| >pdb|4AFN|A Chain A, Crystal Structure Of 3-ketoacyl-(acyl-carrier-protein) Reductase (fabg) From Pseudomonas Aeruginosa At 2.3a Resolution Length = 269 | Back alignment and structure |
|
| >pdb|3AI1|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Reveals The Structure Bases Of Its Catalytic Mechanism And High Substrate Selectivity Length = 263 | Back alignment and structure |
|
| >pdb|3EZL|A Chain A, Crystal Structure Of Acetyacetyl-Coa Reductase From Burkholderia Pseudomallei 1710b Length = 256 | Back alignment and structure |
|
| >pdb|2PH3|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl Carrier Protein] Reductase Ttha0415 From Thermus Thermophilus Length = 245 | Back alignment and structure |
|
| >pdb|1XKQ|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE OF Unknown Function From Caenorhabditis Elegans With Cofactor Length = 280 | Back alignment and structure |
|
| >pdb|3ENN|A Chain A, 2.1a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE FROM BRUCELLA Melitensis (P43212) Length = 249 | Back alignment and structure |
|
| >pdb|1WMA|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Hydroxy-pp Length = 276 | Back alignment and structure |
|
| >pdb|3EMK|A Chain A, 2.5a Crystal Structure Of GlucoseRIBITOL DEHYDROGENASE From Brucella Melitensis Length = 246 | Back alignment and structure |
|
| >pdb|3SJU|A Chain A, Hedamycin Polyketide Ketoreductase Bound To Nadph Length = 279 | Back alignment and structure |
|
| >pdb|2PFG|A Chain A, Crystal Structure Of Human Cbr1 In Complex With Bigf2 Length = 276 | Back alignment and structure |
|
| >pdb|3RKU|A Chain A, Substrate Fingerprint And The Structure Of Nadp+ Dependent Serine Dehydrogenase From Saccharomyces Cerevisiae Complexed With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|3AI3|A Chain A, The Crystal Structure Of L-Sorbose Reductase From Gluconobacter Frateurii Complexed With Nadph And L-Sorbose Length = 263 | Back alignment and structure |
|
| >pdb|3OSU|A Chain A, Crystal Structure Of The 3-Oxoacyl-Acyl Carrier Protein Reductase, Fabg, From Staphylococcus Aureus Length = 246 | Back alignment and structure |
|
| >pdb|2NWQ|A Chain A, Short Chain Dehydrogenase From Pseudomonas Aeruginosa Length = 272 | Back alignment and structure |
|
| >pdb|1AHI|A Chain A, 7 Alpha-Hydroxysteroid Dehydrogenase Complexed With Nadh And 7-Oxo Glycochenodeoxycholic Acid Length = 255 | Back alignment and structure |
|
| >pdb|3LYL|A Chain A, Structure Of 3-Oxoacyl-Acylcarrier Protein Reductase, Fabg From Francisella Tularensis Length = 247 | Back alignment and structure |
|
| >pdb|2QQ5|A Chain A, Crystal Structure Of Human Sdr Family Member 1 Length = 260 | Back alignment and structure |
|
| >pdb|2RBE|A Chain A, The Discovery Of 2-Anilinothiazolones As 11beta-Hsd1 Inhibitors Length = 275 | Back alignment and structure |
|
| >pdb|2IRW|A Chain A, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With Nadp And Adamantane Ether Inhibitor Length = 264 | Back alignment and structure |
|
| >pdb|4BB5|A Chain A, Free-Wilson And Structural Approaches To Co-Optimising Human And Rodent Isoform Potency For 11b-Hydroxysteroid Dehydrogenase Type 1 11b-Hsd1 Inhibitors Length = 292 | Back alignment and structure |
|
| >pdb|3D5Q|A Chain A, Crystal Structure Of 11b-Hsd1 In Complex With Triazole Inhibitor Length = 272 | Back alignment and structure |
|
| >pdb|2BEL|A Chain A, Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase In Complex With Nadp And Carbenoxolone Length = 283 | Back alignment and structure |
|
| >pdb|4BB6|A Chain A, Free-Wilson And Structural Approaches To Co-Optimising Human And Rodent Isoform Potency For 11b-Hydroxysteroid Dehydrogenase Type 1 11b-Hsd1 Inhibitors Length = 292 | Back alignment and structure |
|
| >pdb|1XU7|A Chain A, Crystal Structure Of The Interface Open Conformation Of Tetrameric 11b-hsd1 Length = 286 | Back alignment and structure |
|
| >pdb|2ILT|A Chain A, Human 11-Beta-Hydroxysteroid Dehydrogenase (Hsd1) With Nadp And Adamantane Sulfone Inhibitor Length = 275 | Back alignment and structure |
|
| >pdb|2HRB|A Chain A, Crystal Structure Of Human Carbonyl Reductase 3, Complexed With Nadp+ Length = 274 | Back alignment and structure |
|
| >pdb|1PR9|A Chain A, Human L-Xylulose Reductase Holoenzyme Length = 244 | Back alignment and structure |
|
| >pdb|3D3W|B Chain B, Structure Of L-Xylulose Reductase With Bound Coenzyme, Phosphate And Hydroxide Length = 245 | Back alignment and structure |
|
| >pdb|3PDJ|A Chain A, Crystal Structure Of Human 11-Beta-Hydroxysteroid Dehydrogenase 1 (11b-Hsd1) In Complex With 4,4-Disubstituted Cyclohexylbenzamide Inhibitor Length = 273 | Back alignment and structure |
|
| >pdb|4B79|A Chain A, The Aeropath Project And Pseudomonas Aeruginosa High-throughput Crystallographic Studies For Assessment Of Potential Targets In Early Stage Drug Discovery. Length = 242 | Back alignment and structure |
|
| >pdb|3TOX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase In Complex With Nad(P) From Sinorhizobium Meliloti 1021 Length = 280 | Back alignment and structure |
|
| >pdb|2DTD|A Chain A, Structure Of Thermoplasma Acidophilum Aldohexose Dehydrogenase (aldt) In Ligand-free Form Length = 264 | Back alignment and structure |
|
| >pdb|3D3W|A Chain A, Structure Of L-Xylulose Reductase With Bound Coenzyme, Phosphate And Hydroxide Length = 244 | Back alignment and structure |
|
| >pdb|2ZK7|A Chain A, Structure Of A C-Terminal Deletion Mutant Of Thermoplasma Acidophilum Aldohexose Dehydrogenase (Aldt) Length = 257 | Back alignment and structure |
|
| >pdb|3P19|A Chain A, Improved Nadph-Dependent Blue Fluorescent Protein Length = 266 | Back alignment and structure |
|
| >pdb|3AK4|A Chain A, Crystal Structure Of Nadh-Dependent Quinuclidinone Reductase From Agrobacterium Tumefaciens Length = 263 | Back alignment and structure |
|
| >pdb|3CH6|A Chain A, Crystal Structure Of 11beta-Hsd1 Double Mutant (L262r, F278e) Complexed With (3,3-Dimethylpiperidin-1-Yl)(6-(3- Fluoro-4-Methylphenyl)pyridin-2-Yl)methanone Length = 286 | Back alignment and structure |
|
| >pdb|2PD6|A Chain A, Structure Of Human Hydroxysteroid Dehydrogenase Type 8, Hsd17b8 Length = 264 | Back alignment and structure |
|
| >pdb|4HFR|A Chain A, Human 11beta-Hydroxysteroid Dehydrogenase Type 1 In Complex With An Orally Bioavailable Acidic Inhibitor Azd4017. Length = 272 | Back alignment and structure |
|
| >pdb|3RIH|A Chain A, Crystal Structure Of A Putative Short Chain Dehydrogenase Or Reductase From Mycobacterium Abscessus Length = 293 | Back alignment and structure |
|
| >pdb|3R1I|A Chain A, Crystal Structure Of A Short-Chain Type DehydrogenaseREDUCTASE FROM Mycobacterium Marinum Length = 276 | Back alignment and structure |
|
| >pdb|1ZJY|A Chain A, Structure Of R-Specific Alcohol Dehydrogenase (Mutant G37d) From Lactobacillus Brevis In Complex With Phenylethanol And Nadh Length = 251 | Back alignment and structure |
|
| >pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh) (Apoenyzme) From Lactobacillus Brevis Length = 251 | Back alignment and structure |
|
| >pdb|1YXM|A Chain A, Crystal Structure Of Peroxisomal Trans 2-Enoyl Coa Reductase Length = 303 | Back alignment and structure |
|
| >pdb|3LF1|A Chain A, Apo Structure Of The Short Chain Oxidoreductase Q9hya2 From Pseudomonas Aeruginosa Pao1 Containing An Atypical Catalytic Center Length = 265 | Back alignment and structure |
|
| >pdb|1N5D|A Chain A, Crystal Structure Of Porcine Testicular Carbonyl Reductase 20beta-Hydroxysteroid Dehydrogenase Length = 288 | Back alignment and structure |
|
| >pdb|3V2H|A Chain A, The Crystal Structure Of D-Beta-Hydroxybutyrate Dehydrogenase From Sinorhizobium Meliloti Length = 281 | Back alignment and structure |
|
| >pdb|2D1Y|A Chain A, Crystal Structure Of Tt0321 From Thermus Thermophilus Hb8 Length = 256 | Back alignment and structure |
|
| >pdb|2YZ7|A Chain A, X-Ray Analyses Of 3-Hydroxybutyrate Dehydrogenase From Alcaligenes Faecalis Length = 260 | Back alignment and structure |
|
| >pdb|3U9L|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Reductase (Nadph) From Sinorhizobium Meliloti Length = 324 | Back alignment and structure |
|
| >pdb|2BD0|A Chain A, Chlorobium Tepidum Sepiapterin Reductase Complexed With Nadp And Sepiapterin Length = 244 | Back alignment and structure |
|
| >pdb|3IS3|A Chain A, Crystal Structure Of 17beta-Hydroxysteroid Dehydrogenase (Apo Form) From Fungus Cochliobolus Lunatus Length = 270 | Back alignment and structure |
|
| >pdb|1XQ1|A Chain A, X-Ray Structure Of Putative Tropinone Reducatse From Arabidopsis Thaliana Gene At1g07440 Length = 266 | Back alignment and structure |
|
| >pdb|4IQG|C Chain C, Crystal Structure Of Bpro0239 Oxidoreductase From Polaromonas Sp. Js666 In Nadp Bound Form Length = 271 | Back alignment and structure |
|
| >pdb|3V2G|A Chain A, Crystal Structure Of A DehydrogenaseREDUCTASE FROM SINORHIZOBIUM Meliloti 1021 Length = 271 | Back alignment and structure |
|
| >pdb|1DOH|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex With Nadph And 4-nitro-inden-1-one Length = 283 | Back alignment and structure |
|
| >pdb|1YBV|A Chain A, Structure Of Trihydroxynaphthalene Reductase In Complex With Nadph And An Active Site Inhibitor Length = 283 | Back alignment and structure |
|
| >pdb|2Q2Q|A Chain A, Structure Of D-3-Hydroxybutyrate Dehydrogenase From Pseudomonas Putida Length = 255 | Back alignment and structure |
|
| >pdb|1IOL|A Chain A, Estrogenic 17-beta Hydroxysteroid Dehydrogenase Complexed 17-beta- Estradiol Length = 327 | Back alignment and structure |
|
| >pdb|4E3Z|A Chain A, Crystal Structure Of A Oxidoreductase From Rhizobium Etli Cfn 42 Length = 272 | Back alignment and structure |
|
| >pdb|2JAP|A Chain A, Clavulanic Acid Dehydrogenase: Structural And Biochemical Analysis Of The Final Step In The Biosynthesis Of The Beta- Lactamase Inhibitor Clavulanic Acid Length = 247 | Back alignment and structure |
|
| >pdb|1FDW|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant H221q Complexed With Estradiol Length = 327 | Back alignment and structure |
|
| >pdb|1XHL|A Chain A, Crystal Structure Of Putative Tropinone Reductase-Ii From Caenorhabditis Elegans With Cofactor And Substrate Length = 297 | Back alignment and structure |
|
| >pdb|1FDU|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Mutant H221l Complexed With Estradiol And Nadp+ Length = 327 | Back alignment and structure |
|
| >pdb|3ITD|A Chain A, Crystal Structure Of An Inactive 17beta-Hydroxysteroid Dehydrogenase (Y167f Mutated Form) From Fungus Cochliobolus Lunatus Length = 270 | Back alignment and structure |
|
| >pdb|1FDS|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 Complexed With 17- Beta-Estradiol Length = 327 | Back alignment and structure |
|
| >pdb|1A27|A Chain A, Human 17-Beta-Hydroxysteroid-Dehydrogenase Type 1 C-Terminal Deletion Mutant Complexed With Estradiol And Nadp+ Length = 289 | Back alignment and structure |
|
| >pdb|2EHD|A Chain A, Crystal Structure Analysis Of Oxidoreductase Length = 234 | Back alignment and structure |
|
| >pdb|1EQU|A Chain A, Type 1 17-Beta Hydroxysteroid Dehydrogenase Equilin Complexed With Nadp+ Length = 327 | Back alignment and structure |
|
| >pdb|4FN4|A Chain A, Short-chain Nad(h)-dependent Dehydrogenase/reductase From Sulfolobus Acidocaldarius Length = 254 | Back alignment and structure |
|
| >pdb|3ASU|A Chain A, Crystal Structure Of Serine Dehydrogenase From Escherichia Coli Length = 248 | Back alignment and structure |
|
| >pdb|3IOY|A Chain A, Structure Of Putative Short-Chain Dehydrogenase (Saro_0793) From Novosphingobium Aromaticivorans Length = 319 | Back alignment and structure |
|
| >pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein) Reductase Rickettsia Prowazekii Length = 249 | Back alignment and structure |
|
| >pdb|3KVO|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Hydroxysteroid Dehydrogenase Like 2 (Hsdl2) Length = 346 | Back alignment and structure |
|
| >pdb|4E6P|A Chain A, Crystal Structure Of A Probable Sorbitol Dehydrogenase (Target Psi- 012078) From Sinorhizobium Meliloti 1021 Length = 259 | Back alignment and structure |
|
| >pdb|3TJR|A Chain A, Crystal Structure Of A Rv0851c Ortholog Short Chain Dehydrogenase From Mycobacterium Paratuberculosis Length = 301 | Back alignment and structure |
|
| >pdb|2NM0|A Chain A, Crystal Structure Of Sco1815: A Beta-Ketoacyl-Acyl Carrier Protein Reductase From Streptomyces Coelicolor A3(2) Length = 253 | Back alignment and structure |
|
| >pdb|1SPX|A Chain A, Crystal Structure Of Glucose Dehydrogenase Of Caenorhabditis Elegans In The Apo-Form Length = 278 | Back alignment and structure |
|
| >pdb|3TN7|A Chain A, Crystal Structure Of Short-Chain Alcohol Dehydrogenase From Hyperthermophilic Archaeon Thermococcus Sibiricus Complexed With 5- Hydroxy-Nadp Length = 257 | Back alignment and structure |
|
| >pdb|3L77|A Chain A, X-Ray Structure Alcohol Dehydrogenase From Archaeon Thermococcus Sibiricus Complexed With 5-Hydroxy-Nadp Length = 235 | Back alignment and structure |
|
| >pdb|4IIU|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier Protein]reductase From Escherichia Coli Strain Cft073 Complexed With Nadp+ At 2.1 A Resolution Length = 267 | Back alignment and structure |
|
| >pdb|3PK0|A Chain A, Crystal Structure Of Short-Chain DehydrogenaseREDUCTASE SDR FROM Mycobacterium Smegmatis Length = 262 | Back alignment and structure |
|
| >pdb|2JAH|A Chain A, Biochemical And Structural Analysis Of The Clavulanic Acid Dehydeogenase (Cad) From Streptomyces Clavuligerus Length = 247 | Back alignment and structure |
|
| >pdb|3R3S|A Chain A, Structure Of The Ygha Oxidoreductase From Salmonella Enterica Length = 294 | Back alignment and structure |
|
| >pdb|3T4X|A Chain A, Short Chain DehydrogenaseREDUCTASE FAMILY OXIDOREDUCTASE FROM Bacillus Anthracis Str. Ames Ancestor Length = 267 | Back alignment and structure |
|
| >pdb|4IIN|A Chain A, Crystal Structure Of A Putative 3-Oxoacyl-[acyl-Carrier Protein]reductase From Helicobacter Pylori 26695 Complexed With Nad+ Length = 271 | Back alignment and structure |
|
| >pdb|3I4F|A Chain A, Structure Of Putative 3-oxoacyl-reductase From Bacillus Thuringiensis Length = 264 | Back alignment and structure |
|
| >pdb|3GMD|A Chain A, Structure-Based Design Of 7-Azaindole-Pyrrolidines As Inhibitors Of 11beta-Hydroxysteroid-Dehydrogenase Type I Length = 264 | Back alignment and structure |
|
| >pdb|1H5Q|A Chain A, Mannitol Dehydrogenase From Agaricus Bisporus Length = 265 | Back alignment and structure |
|
| >pdb|3U5T|A Chain A, The Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein] Reductase From Sinorhizobium Meliloti Length = 267 | Back alignment and structure |
|
| >pdb|3GVC|A Chain A, Crystal Structure Of Probable Short-Chain Dehydrogenase- Reductase From Mycobacterium Tuberculosis Length = 277 | Back alignment and structure |
|
| >pdb|1Y5M|A Chain A, The Crystal Structure Of Murine 11b-Hydroxysteroid Dehydrogenase: An Important Therapeutic Target For Diabetes Length = 276 | Back alignment and structure |
|
| >pdb|3NYW|A Chain A, Crystal Structure Of A Betaketoacyl-[acp] Reductase (Fabg) From Bacteroides Thetaiotaomicron Length = 250 | Back alignment and structure |
|
| >pdb|3UCX|A Chain A, The Structure Of A Short Chain Dehydrogenase From Mycobacterium Smegmatis Length = 264 | Back alignment and structure |
|
| >pdb|1NFF|A Chain A, Crystal Structure Of Rv2002 Gene Product From Mycobacterium Tuberculosis Length = 260 | Back alignment and structure |
|
| >pdb|1NFR|A Chain A, Rv2002 Gene Product From Mycobacterium Tuberculosis Length = 260 | Back alignment and structure |
|
| >pdb|1ZEM|A Chain A, Crystal Structure Of Nad+-Bound Xylitol Dehydrogenase Length = 262 | Back alignment and structure |
|
| >pdb|3IJR|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' In Complex With Nad+ Length = 291 | Back alignment and structure |
|
| >pdb|3AY6|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 A258f Mutant In Complex With Nadh And D-Glucose Length = 269 | Back alignment and structure |
|
| >pdb|3AY7|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 G259a Mutant Length = 269 | Back alignment and structure |
|
| >pdb|3I3O|A Chain A, 2.06 Angstrom Resolution Crystal Structure Of A Short Chain Dehydrogenase From Bacillus Anthracis Str. 'ames Ancestor' In Complex With Nad-acetone Length = 291 | Back alignment and structure |
|
| >pdb|3AUS|A Chain A, Crystal Structure Of Bacillus Megaterium Glucose Dehydrogenase 4 In Ligand-Free Form Length = 269 | Back alignment and structure |
|
| >pdb|3QIV|A Chain A, Crystal Structure Of A Putative Short-Chain Dehydrogenase Or 3- Oxoacyl-[acyl-Carrier-Protein] Reductase From Mycobacterium Paratuberculosis Atcc Baa-968 K-10 Length = 253 | Back alignment and structure |
|
| >pdb|2WDZ|A Chain A, Crystal Structure Of The Short Chain Dehydrogenase Galactitol-Dehydrogenase (Gatdh) Of Rhodobacter Sphaeroides In Complex With Nad+ And 1,2-Pentandiol Length = 254 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} Length = 291 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 5e-68
Identities = 80/242 (33%), Positives = 121/242 (50%), Gaps = 24/242 (9%)
Query: 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLP 119
LP T ++TG+ SG+G AR+LA GA V+MAVR+ + + +
Sbjct: 11 LPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAART---------MA 61
Query: 120 LNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN 179
+E ELDL L SV RF++ +G VLINNAGI ++ P + DG+E + N
Sbjct: 62 GQVEVRELDLQDLSSVRRFADGVSG----ADVLINNAGIMAV--PYALTVDGFESQIGTN 115
Query: 180 HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
HL L+ LL P L R++ V+S+ H+ G ++ ED+N R+Y+ + YS SK
Sbjct: 116 HLGHFALTNLLLPRL----TDRVVTVSSMAHWPGRINLEDLN--WRSRRYSPWLAYSQSK 169
Query: 240 LAQIKFSSILQKRLPAE-SGINVVCVSPGIVSTNVARDLPK-IVQAAYHLIPYFIF-NPQ 296
LA + F+S LQ+RL A S + + PG TN+ + + A + +
Sbjct: 170 LANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGASGRKLGDALMSAATRVVATDAD 229
Query: 297 EG 298
G
Sbjct: 230 FG 231
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* Length = 276 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 8e-57
Identities = 58/262 (22%), Positives = 90/262 (34%), Gaps = 51/262 (19%)
Query: 67 TCIVTGSTSGIGREIARQLAE-SGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
+VTG GIG I R L VV+ R++ +Q+ Q E L+
Sbjct: 6 VALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE------GLSPRFH 59
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
+LD+ L S+ + G L VL+NNAGI E M+ N
Sbjct: 60 QLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRD 119
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVD--------------------------TED 219
+ L P LI+ R++NV+S+M ED
Sbjct: 120 VCTELLP-LIKPQG-RVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVED 177
Query: 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAE---SGINVVCVSPGIVSTNVARD 276
+++ Y +K+ S I ++L + I + PG V T++A
Sbjct: 178 TKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAG- 236
Query: 277 LPKIVQAAYHLIPYFIFNPQEG 298
P +P+EG
Sbjct: 237 ------------PKATKSPEEG 246
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} Length = 311 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 2e-46
Identities = 51/271 (18%), Positives = 97/271 (35%), Gaps = 67/271 (24%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG GIG EI +QL+ +G VV+ R++ +E ++K + N+ +
Sbjct: 14 CAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS-----NHENVVFHQ 68
Query: 127 LDLLSLDSVVR-FSEAWNGRLGPLHVLINNAGIFSIG----------------------- 162
LD+ + + ++ G L +L+NNAG+
Sbjct: 69 LDVTDPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKI 128
Query: 163 -------EPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG-- 213
E + + EE +++N+ ++ +L P L RI+NV+S +
Sbjct: 129 YEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQLSDSPRIVNVSSSTGSLKYV 188
Query: 214 --------------------------FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSS 247
+ N++ + Y+ SK ++
Sbjct: 189 SNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTR 248
Query: 248 ILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
+L ++P V CV PG+V T + +
Sbjct: 249 VLANKIP---KFQVNCVCPGLVKTEMNYGIG 276
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* Length = 263 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 1e-32
Identities = 47/218 (21%), Positives = 93/218 (42%), Gaps = 21/218 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TGS+SGIG IA A+ GAH+V+ R + +E + +E++ + + +
Sbjct: 9 VAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVR-----VLEVA 63
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+D+ + + V E+ G +L+NNAG S + + + ++ + ++ +A L
Sbjct: 64 VDVATPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRL 123
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ L P + II+ S + + Y+ +K A + FS
Sbjct: 124 ARGLVPGMRARGGGAIIHNAS---------------ICAVQPLWYEPIYNVTKAALMMFS 168
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAA 284
L + + I V C++PG++ T K +
Sbjct: 169 KTLATEV-IKDNIRVNCINPGLILTPDWIKTAKELTKD 205
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... Length = 286 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 4e-32
Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 22/214 (10%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
+ IVTG++ GIGRE+A LA+ GAHVV+ R+ + +++ E +
Sbjct: 26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAAS-----A 80
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA 182
+ + + +F +G L +LI N + + M+VN L+
Sbjct: 81 HYIAGTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLS 140
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
+L++ P L + + I+ V+S+ G+ Y + YS SK A
Sbjct: 141 YVVLTVAALPMLKQSN-GSIVVVSSLA---------------GKVAYPMVAAYSASKFAL 184
Query: 243 IKFSSILQKRL-PAESGINVVCVSPGIVSTNVAR 275
F S ++K + +++ G++ T A
Sbjct: 185 DGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAM 218
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} Length = 245 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-31
Identities = 48/219 (21%), Positives = 83/219 (37%), Gaps = 30/219 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+T G+G EI + L+ + RN + L + +E +E
Sbjct: 7 IAVVTGATGGMGIEIVKDLSRDHIVYALG-RNPEHLAALAEI-----------EGVEPIE 54
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D++ + L + L++ A + + S + H+ +N + PA L
Sbjct: 55 SDIVKEVLEEGGVDKLK-NLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAEL 113
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
S L P+L S +I +NS +G + Y+ SK A +
Sbjct: 114 SRQLLPALRAAS-GCVIYINS---------------GAGNGPHPGNTIYAASKHALRGLA 157
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
+K A +GI V VSPG +T + + L +
Sbjct: 158 DAFRKEE-ANNGIRVSTVSPGPTNTPMLQGLMDSQGTNF 195
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} Length = 235 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-31
Identities = 38/219 (17%), Positives = 74/219 (33%), Gaps = 26/219 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG+ SG+GR + L E G V M R + + L + +
Sbjct: 5 HIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELL---------LGNAVIGIV 55
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
DL + V A G ++++ AG G ++ + M+ N ++ L+
Sbjct: 56 ADLAHHEDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILV 115
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ + + NV S + + + Y SK F
Sbjct: 116 AQQTVRLIGERG-GVLANVLS---------------SAAQVGKANESLYCASKWGMRGFL 159
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
L+ L +S + +V + P + + + + + +
Sbjct: 160 ESLRAEL-KDSPLRLVNLYPSGIRSEFWDNTDHVDPSGF 197
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 Length = 273 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 7e-30
Identities = 65/230 (28%), Positives = 100/230 (43%), Gaps = 29/230 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTG + GIG I +LA GA V RN K +E ++ W+E KG LN+E
Sbjct: 23 TALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWRE----KG--LNVEGSV 76
Query: 127 LDLLSLDSVVRF----SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA 182
DLLS + + ++G+ L++L+NNAG+ E + F++ Y M N A
Sbjct: 77 CDLLSRTERDKLMQTVAHVFDGK---LNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEA 133
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
LS + +P L +I ++S+ + S+ YS SK A
Sbjct: 134 AYHLSQIAYPLLKASQNGNVIFLSSIAGFSALP---------------SVSLYSASKGAI 178
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFI 292
+ + L A+ I V V+PG++ T + K I FI
Sbjct: 179 NQMTKSLACEW-AKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFI 227
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 8e-30
Identities = 42/215 (19%), Positives = 81/215 (37%), Gaps = 26/215 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T VTG +G+G + RQL G V +A + ++ +G + ++
Sbjct: 10 TAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKA----LATLEAEGSGPEVMGVQ 65
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN-----HL 181
LD+ S + ++ R GP+ +L NNAG+ ++ S D ++ + VN +
Sbjct: 66 LDVASREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNG 125
Query: 182 APALLSILL-FPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
+ ++ ++N S+ F+ + Y+ +K
Sbjct: 126 VTTFVPRMVERVKAGEQKGGHVVNTASM---AAFLAAGSPGI------------YNTTKF 170
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275
A S L L + I V + PG+V + +
Sbjct: 171 AVRGLSESLHYSL-LKYEIGVSVLCPGLVKSYIYA 204
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 9e-30
Identities = 46/222 (20%), Positives = 84/222 (37%), Gaps = 23/222 (10%)
Query: 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGK 116
P V ++TG+ GIGR A + A+ + +V+ N E K K
Sbjct: 23 PKRRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC------K 76
Query: 117 GLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHM 176
GL + +D + + + ++ +G + +L+NNAG+ + E+
Sbjct: 77 GLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTF 136
Query: 177 QVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYS 236
+VN LA + P++ + + I+ V S +V L+ Y
Sbjct: 137 EVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSV---------------PFLLAYC 181
Query: 237 GSKLAQIKFSSILQK--RLPAESGINVVCVSPGIVSTNVARD 276
SK A + F L +G+ C+ P V+T ++
Sbjct: 182 SSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN 223
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* Length = 244 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 9e-30
Identities = 54/227 (23%), Positives = 95/227 (41%), Gaps = 34/227 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+ GIGR + L +GA VV R + L+++ G IE +
Sbjct: 9 RVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE------CPG----IEPVC 58
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+DL ++ R + +GP+ +L+NNA + + + +K+ ++ +VN A +
Sbjct: 59 VDLGDWEATERALGS----VGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQV 114
Query: 187 SILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
S ++ LI RG P I+NV+S N Y +K A
Sbjct: 115 SQIVARGLIARGVPGAIVNVSSQCSQRAVT-----NHSV----------YCSTKGALDML 159
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIP 289
+ ++ L I V V+P +V T++ + P + + IP
Sbjct: 160 TKVMALEL-GPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIP 205
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} Length = 276 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 1e-29
Identities = 63/231 (27%), Positives = 99/231 (42%), Gaps = 31/231 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG + GIG+ IA+ L E+GA V + R+ +A + S G + +A+
Sbjct: 31 IALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADT----ATRLSAYG---DCQAIP 83
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
DL S R ++A L +L+NNAG S G + + G+E+ MQ+N +
Sbjct: 84 ADLSSEAGARRLAQALGELSARLDILVNNAGT-SWGAALESYPVSGWEKVMQLNVTSVFS 142
Query: 186 LSILLFPSLIRG----SPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
L P L R +P+R+IN+ SV + Y SK A
Sbjct: 143 CIQQLLPLLRRSASAENPARVINIGSVAGISAM----GEQAYA----------YGPSKAA 188
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTN---VARDLPKIVQAAYHLIP 289
+ S +L K L INV ++PG + + P+ ++A IP
Sbjct: 189 LHQLSRMLAKEL-VGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASIP 238
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} Length = 207 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 1e-29
Identities = 40/206 (19%), Positives = 71/206 (34%), Gaps = 37/206 (17%)
Query: 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
+ ++TG+T G+G AR L G ++++ R A EL E + LP
Sbjct: 1 MRVLITGATGGLGGAFARALK--GHDLLLSGRRAGALAEL----AREVGARALPA----- 49
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
DL E GPL +L++ G ++ +D EE + + L A
Sbjct: 50 --DLADELEAKALLEEA----GPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAA- 102
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ +R + + + Y+ +K A +
Sbjct: 103 ---FVLKHARFQKGARAVFFGA---------------YPRYVQVPGFAAYAAAKGALEAY 144
Query: 246 SSILQKRLPAESGINVVCVSPGIVST 271
+K L G+++V V V+T
Sbjct: 145 LEAARKEL-LREGVHLVLVRLPAVAT 169
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* Length = 265 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-29
Identities = 43/212 (20%), Positives = 78/212 (36%), Gaps = 20/212 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG +SGIG L E+GA V R+ + ++ + G + A
Sbjct: 10 VAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPG----ARLFASV 65
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+L V F+EA LG +L+NNAG + + + + + E +Q+ +
Sbjct: 66 CDVLDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHP 125
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
P L + + I+ VNS + + ++ S ++
Sbjct: 126 VRAFLPQLESRADAAIVCVNS---------------LLASQPEPHMVATSAARAGVKNLV 170
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
+ A G+ V + G+V + R
Sbjct: 171 RSMAFEF-APKGVRVNGILIGLVESGQWRRRF 201
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} Length = 267 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 2e-29
Identities = 48/213 (22%), Positives = 84/213 (39%), Gaps = 24/213 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTGST+GIG+ IA L GA+V++ R + NE I++ + + + + A
Sbjct: 12 TALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQ-YPDAILQPVVA-- 68
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
DL + E + + +LINN GIF E + + + +VN ++ L
Sbjct: 69 -DLGTEQGCQDVIEKY----PKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRL 123
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ +I R+I + S + + YS +K Q+ S
Sbjct: 124 TRSYLKKMIERKEGRVIFIAS---------------EAAIMPSQEMAHYSATKTMQLSLS 168
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
L + + + V + PG T +
Sbjct: 169 RSLAELT-TGTNVTVNTIMPGSTLTEGVETMLN 200
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* Length = 260 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 2e-29
Identities = 57/212 (26%), Positives = 89/212 (41%), Gaps = 23/212 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTG + GIG I +LA GA V RN K N+ + +W+ KG +EA
Sbjct: 11 TALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRS----KG--FKVEASV 64
Query: 127 LDLLSLDSVVR-FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
DL S + N G L++L+NNAGI E + ++ + Y M +N A
Sbjct: 65 CDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYH 124
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
LS+L P L ++ ++SV + Y +K A +
Sbjct: 125 LSVLAHPFLKASERGNVVFISSVSGALAVP---------------YEAVYGATKGAMDQL 169
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
+ L A+ I V V PG+++T++
Sbjct: 170 TRCLAFEW-AKDNIRVNGVGPGVIATSLVEMT 200
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 2e-29
Identities = 53/227 (23%), Positives = 88/227 (38%), Gaps = 25/227 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG+T GIG +IAR A +GA +V++ R++ + + E++ +
Sbjct: 22 RALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVH-----TVA 76
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+DL D+ + G L VL+NNAGI ++ + VN APALL
Sbjct: 77 IDLAEPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALL 136
Query: 187 SILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ + +++ G II V S D Y SK +
Sbjct: 137 ASAVGKAMVAAGEGGAIITVASAAALAPLPD---------------HYAYCTSKAGLVMA 181
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIP 289
+ +L + L GI V P +V T + + + IP
Sbjct: 182 TKVLAREL-GPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARIP 227
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-29
Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 34/227 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+ GIGR+ + L SGA VV R L ++ G IE +
Sbjct: 9 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE------CPG----IEPVC 58
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+DL D+ + +GP+ +L+NNA + + + +K+ ++ VN + +
Sbjct: 59 VDLGDWDATEKALGG----IGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQV 114
Query: 187 SILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
S ++ +I RG P I+NV+S++ +V F + L+ YS +K A
Sbjct: 115 SQMVARDMINRGVPGSIVNVSSMVAHVTFPN---------------LITYSSTKGAMTML 159
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIP 289
+ + L I V V+P +V T++ + + P+ + P
Sbjct: 160 TKAMAMEL-GPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHP 205
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 3e-29
Identities = 48/220 (21%), Positives = 86/220 (39%), Gaps = 23/220 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG SGIG A + A GA +V++ + A + + G+G +
Sbjct: 33 AAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAV----NGLRGQGFD--AHGVV 86
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ LD +VR ++ LG + V+ +NAGI G + + D + + ++
Sbjct: 87 CDVRHLDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHA 146
Query: 187 SILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
P L+ +G+ I S G V + Y +K +
Sbjct: 147 VEAFLPRLLEQGTGGHIAFTASF---AGLVPNAGLGT------------YGVAKYGVVGL 191
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
+ L + + +GI V + P +V T + + +I A Y
Sbjct: 192 AETLAREV-KPNGIGVSVLCPMVVETKLVSNSERIRGADY 230
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 Length = 279 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-29
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 22/208 (10%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG++ GIG +AR L + G VV R + I++ E G P + D
Sbjct: 36 LVTGASGGIGAAVARALVQQGLKVVGCARTV----GNIEELAAECKSAGYPGTLIPYRCD 91
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
L + + ++ A + + + INNAG+ S G+++ VN LA ++ +
Sbjct: 92 LSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTR 151
Query: 189 LLFPSLIRGSPSR--IINVNSVM-HYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ S+ + IIN+NS+ H V + + YS +K A
Sbjct: 152 EAYQSMKERNVDDGHIININSMSGHRV--LPLSVTHF------------YSATKYAVTAL 197
Query: 246 SSILQKRL-PAESGINVVCVSPGIVSTN 272
+ L++ L A++ I C+SPG+V T
Sbjct: 198 TEGLRQELREAQTHIRATCISPGVVETQ 225
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} Length = 247 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 5e-29
Identities = 51/213 (23%), Positives = 80/213 (37%), Gaps = 21/213 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLP-LNIEAM 125
+VTG+ GIG AR A GA VV+ R + E+ ++ G P I A+
Sbjct: 16 VILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEV----SDQIKSAGQPQPLIIAL 71
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPA 184
L+ + + G L L++NA I P ++ + + + M VN A
Sbjct: 72 NLENATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATF 131
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
+L+ L P L R + I +S VG GR + + Y SK A
Sbjct: 132 MLTRALLPLLKRSEDASIAFTSSS---VG---------RKGRANWGA---YGVSKFATEG 176
Query: 245 FSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
L L + + ++PG T +
Sbjct: 177 LMQTLADELEGVTAVRANSINPGATRTGMRAQA 209
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} Length = 260 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 8e-29
Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 21/211 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VT +SG+G A +LA +GA +++ RN + + SG ++ +
Sbjct: 9 LAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGA----QVDIVA 64
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ + R E LG +L+ + G G + + ++E ++ + +
Sbjct: 65 GDIREPGDIDRLFEK-ARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWV 123
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
++ R++ + S V+ R + L + +L I
Sbjct: 124 GRRAAEQMVEKGWGRMVYIGS---------------VTLLRPWQDLALSNIMRLPVIGVV 168
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDL 277
L L A G+ V V P ++ T+ R L
Sbjct: 169 RTLALEL-APHGVTVNAVLPSLILTDRVRSL 198
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* Length = 259 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 9e-29
Identities = 41/223 (18%), Positives = 78/223 (34%), Gaps = 34/223 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAE---SGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
C++TG++ G GR +A QLA G+ ++++ R+ +L +EE + L +
Sbjct: 8 VCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQL----KEELGAQQPDLKVV 63
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGP----LHVLINNAGIFSIGEPQKF---SKDGYEEHM 176
DL + V R A P +LINNA +
Sbjct: 64 LAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYW 123
Query: 177 QVNHLAPALLSILLFPSLI--RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG 234
+N + L+ + G ++N++S + + Y
Sbjct: 124 ALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISS---------------LCALQPYKGWGL 168
Query: 235 YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
Y K A+ +L P + V+ +PG + ++ +
Sbjct: 169 YCAGKAARDMLYQVLAAEEP---SVRVLSYAPGPLDNDMQQLA 208
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} Length = 250 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-28
Identities = 45/223 (20%), Positives = 85/223 (38%), Gaps = 20/223 (8%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
I+TG++ GIG IA LA G VV+ R+ + ++ + +
Sbjct: 9 LAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRS---NKHVQEPIVLP 65
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LD+ + + + G + +L+N A +F G D + + M++N +A +
Sbjct: 66 LDITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDG-SLSEPVDNFRKIMEINVIAQYGI 124
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ + I NV S + + + Y +K A + +
Sbjct: 125 LKTVTEIMKVQKNGYIFNVAS---------------RAAKYGFADGGIYGSTKFALLGLA 169
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIP 289
L + L A GI V + PG V+T++A+ + + P
Sbjct: 170 ESLYREL-APLGIRVTTLCPGWVNTDMAKKAGTPFKDEEMIQP 211
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} Length = 271 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 1e-28
Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 24/224 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
T VTG + GIG IA++LA GA V + V + A ++ + E+ G+ + A+
Sbjct: 33 TAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEI-EQAGGRAV-----AI 86
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
D +++ + LG L +L+N+AGI+ ++ + ++E M VN AP +
Sbjct: 87 RADNRDAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFV 146
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
L G RII + S ++ + + YS SK A
Sbjct: 147 AIRSASRHLGDG--GRIITIGS--------------NLAELVPWPGISLYSASKAALAGL 190
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIP 289
+ L + L GI V V PG T++ +A I
Sbjct: 191 TKGLARDL-GPRGITVNIVHPGSTDTDMNPADGDHAEAQRERIA 233
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A Length = 266 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-28
Identities = 53/226 (23%), Positives = 83/226 (36%), Gaps = 25/226 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTG T GIG I + A GA + RN NE + KWQ+ KG +
Sbjct: 16 TVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQK----KG--FQVTGSV 69
Query: 127 LDLLSLDSVVRFSEAWNGRLG-PLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
D + + + G L +LINN G ++ + + H+ N +
Sbjct: 70 CDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYH 129
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
LS L P L II ++S+ V YS +K A +
Sbjct: 130 LSQLAHPLLKASGCGNIIFMSSIAGVVSAS---------------VGSIYSATKGALNQL 174
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIP 289
+ L A GI V+P +++T +A + + + P
Sbjct: 175 ARNLACEW-ASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKP 219
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} Length = 235 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 4e-28
Identities = 44/206 (21%), Positives = 78/206 (37%), Gaps = 24/206 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG++ GIG IAR LA G + + R++ ++ + +E + +
Sbjct: 4 VAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVE-----VFYHH 58
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LD+ +SV FS+ R G + V++ NAG+ ++ S++ + E ++VN L
Sbjct: 59 LDVSKAESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRT 118
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
SL R ++ + V R GY +K A
Sbjct: 119 LKAFLDSLKRTGGLALVTTSDV----------------SARLIPYGGGYVSTKWAARALV 162
Query: 247 SILQKRLPAESGINVVCVSPGIVSTN 272
Q + + PG V T
Sbjct: 163 RTFQIE---NPDVRFFELRPGAVDTY 185
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} Length = 260 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 6e-28
Identities = 36/223 (16%), Positives = 78/223 (34%), Gaps = 30/223 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG++ +G A +L E G V+++ R A+ +++ A+
Sbjct: 29 PILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQ-----------AGAVALY 77
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D ++ F + + L +++NA + + E D + V+ LAP L+
Sbjct: 78 GDFSCETGIMAFIDLLKTQTSSLRAVVHNASEW-LAETPGEEADNFTRMFSVHMLAPYLI 136
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
++ P L + I++++ G K+ + Y +K +
Sbjct: 137 NLHCEPLLTASEVADIVHISDD------------VTRKGSSKHIA---YCATKAGLESLT 181
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIP 289
R A + V ++P ++ D A
Sbjct: 182 LSFAARF-A-PLVKVNGIAPALLMFQPKDD-AAYRANALAKSA 221
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* Length = 260 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 8e-28
Identities = 52/227 (22%), Positives = 97/227 (42%), Gaps = 26/227 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VT ST GIG IAR+LA+ GAHVV++ R + + + G+G L++
Sbjct: 16 VALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTV----ATLQGEG--LSVTGTV 69
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
+ + R G + +L++NA + +++ +++ + VN A L
Sbjct: 70 CHVGKAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVL 129
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
++ + P + + ++ V+SV Y F +L Y+ SK A +
Sbjct: 130 MTKAVVPEMEKRGGGSVLIVSSVGAYHPFP---------------NLGPYNVSKTALLGL 174
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIP 289
+ L L A I V C++PG++ TN ++ L + +
Sbjct: 175 TKNLAVEL-APRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLR 220
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 250 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 9e-28
Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 34/222 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124
+ +VTG+ GIG + +QL + H++ R+++ A EL +
Sbjct: 5 SVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI---------KDSRVHV 55
Query: 125 MELDLLSLDSVVRFSEAWNGRLG--PLHVLINNAGIF-SIGEPQKFSKDGYEEHMQVNHL 181
+ L + S+ F +G L +LINNAG+ S G + ++ E + VN
Sbjct: 56 LPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTT 115
Query: 182 APALLSILLFPSLIRG-----------SPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYT 230
+ LL+ L P L S + +I ++S + G + D +
Sbjct: 116 SVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGL---GSI--TDN---TSGSAQF 167
Query: 231 SLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272
++ Y SK A F L L + + VV PG V TN
Sbjct: 168 PVLAYRMSKAAINMFGRTLAVDL-KDDNVLVVNFCPGWVQTN 208
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} Length = 254 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 1e-27
Identities = 40/234 (17%), Positives = 83/234 (35%), Gaps = 34/234 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVM--AVRNLKAANELIQKWQEEWSGKGLPLNIEA 124
+VTG + GIG+ I L V+ R+ +L +K
Sbjct: 4 VILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEK---------YGDRFFY 54
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAP 183
+ D+ + + A G + L+ NAG+ + + + +++ +N +
Sbjct: 55 VVGDITEDSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSI 114
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
L + P L + + ++ V+S + ++S Y SK A
Sbjct: 115 VSLVGIALPELKKTN-GNVVFVSS---------------DACNMYFSSWGAYGSSKAALN 158
Query: 244 KFSSILQKRLPAES-GINVVCVSPGIVSTNVARDLP-KIVQAAYHLIPYFIFNP 295
F+ L E + + V+PGIV T++ ++ + ++ +F
Sbjct: 159 HFA----MTLANEERQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRG 208
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 278 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 1e-27
Identities = 51/215 (23%), Positives = 85/215 (39%), Gaps = 23/215 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
I+TGS++GIGR A A GA V + R+ + E Q+ N+ ++
Sbjct: 8 VAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAA---GVSEQNVNSVV 64
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQK----FSKDGYEEHMQVNHLA 182
D+ + G+ G L +L+NNAG K S + Y+ + +N +
Sbjct: 65 ADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRS 124
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
L+ P L I+N++S + SG YS +K A
Sbjct: 125 VIALTKKAVPHLSSTK-GEIVNISS--------------IASGLHATPDFPYYSIAKAAI 169
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
+++ L + GI V +SPG+V+T +
Sbjct: 170 DQYTRNTAIDL-IQHGIRVNSISPGLVATGFGSAM 203
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} Length = 272 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 1e-27
Identities = 57/228 (25%), Positives = 91/228 (39%), Gaps = 25/228 (10%)
Query: 47 QRILASHLQNPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELI 106
H +P T +TG+TSG G AR+ AE+G +V+ R E +
Sbjct: 3 SHHHHHHSSGLVPRGSHMSSTLFITGATSGFGEACARRFAEAGWSLVLTGRRE----ERL 58
Query: 107 QKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-Q 165
Q E S K + + LD+ ++ + L LINNAG+ +P Q
Sbjct: 59 QALAGELSAKT---RVLPLTLDVRDRAAMSAAVDNLPEEFATLRGLINNAGLALGTDPAQ 115
Query: 166 KFSKDGYEEHMQVNHLAPALLSILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVS 224
D ++ + N + LL P LI G+ + I+N+ S V+
Sbjct: 116 SCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGS---------------VA 160
Query: 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272
G+ Y Y G+K +FS L+ L +G+ V + PG+ +
Sbjct: 161 GKWPYPGSHVYGGTKAFVEQFSLNLRCDL-QGTGVRVTNLEPGLCESE 207
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A Length = 259 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-27
Identities = 50/211 (23%), Positives = 86/211 (40%), Gaps = 36/211 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+ ++TGS GIGR A GA V +A +++ A + E A++
Sbjct: 10 SALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAA----AEIGPAAY-----AVQ 60
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+D+ DS+ A G L +L+NNA +F + + +++ YE+ +N +
Sbjct: 61 MDVTRQDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAIN-----VA 115
Query: 187 SILLF-----PSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
L +I +G +IIN+ S +GRR + Y +K
Sbjct: 116 GTLFTLQAAARQMIAQGRGGKIINMAS---------------QAGRRGEALVAIYCATKA 160
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVST 271
A I + L + INV ++PG+V
Sbjct: 161 AVISLTQSAGLDL-IKHRINVNAIAPGVVDG 190
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 280 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 3e-27
Identities = 53/215 (24%), Positives = 94/215 (43%), Gaps = 23/215 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T I+TGS++GIGR A A+ GA+V + R+ + E Q + + ++ A
Sbjct: 8 TVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVA-- 65
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG----YEEHMQVNHLA 182
D+ + D + + + G + VL+NNAG D Y + +++N A
Sbjct: 66 -DVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQA 124
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
++ + P L+ I+NV+S +V+G + + Y+ +K A
Sbjct: 125 VIEMTKKVKPHLVASK-GEIVNVSS--------------IVAGPQAQPDFLYYAIAKAAL 169
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
+++ L A+ GI V VSPG+V T +
Sbjct: 170 DQYTRSTAIDL-AKFGIRVNSVSPGMVETGFTNAM 203
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 297 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 6e-27
Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 21/208 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+ I+TGS++GIGR A A+ GA V + RN E Q+ + + A
Sbjct: 28 SVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVA-- 85
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIG--EPQKFSKDGYEEHMQVNHLAPA 184
D+ + G + +L+NNAG + Y++ ++N A
Sbjct: 86 -DVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVI 144
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
++ LI+ I+NV+S +V+G + ++ Y+ +K A +
Sbjct: 145 EMTQKTKEHLIKTK-GEIVNVSS--------------IVAGPQAHSGYPYYACAKAALDQ 189
Query: 245 FSSILQKRLPAESGINVVCVSPGIVSTN 272
++ L + G+ V VSPG V+T
Sbjct: 190 YTRCTAIDL-IQHGVRVNSVSPGAVATG 216
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} Length = 263 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 6e-27
Identities = 51/211 (24%), Positives = 83/211 (39%), Gaps = 36/211 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG + GIG IAR L ++GA V +A ++ AA ++ G A+E
Sbjct: 14 KAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVV----AGLENGGF-----AVE 64
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+D+ SV + LG +L NAG+ ++ + + ++ + VN
Sbjct: 65 VDVTKRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVN-----AR 119
Query: 187 SILLF-----PSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
+ L + + I+N S ++ + L YS SK
Sbjct: 120 GVFLANQIACRHFLASNTKGVIVNTAS---------------LAAKVGAPLLAHYSASKF 164
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVST 271
A ++ L + + A I V CV PG V T
Sbjct: 165 AVFGWTQALAREM-APKNIRVNCVCPGFVKT 194
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 7e-27
Identities = 48/205 (23%), Positives = 81/205 (39%), Gaps = 20/205 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T ++TGSTSGIG IAR LA++GA++V+ + S +
Sbjct: 27 TAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSS----GTVLHHP 82
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ + R G +L+NNAG+ + + + F + ++ + VN +
Sbjct: 83 ADMTKPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHT 142
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
P + + RIIN+ S V + S Y +K + +
Sbjct: 143 IRGAIPPMKKKGWGRIINIASAHGLVASP-------------FKS--AYVAAKHGIMGLT 187
Query: 247 SILQKRLPAESGINVVCVSPGIVST 271
+ + AESG+ V + PG V T
Sbjct: 188 KTVALEV-AESGVTVNSICPGYVLT 211
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} Length = 267 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 9e-27
Identities = 55/226 (24%), Positives = 85/226 (37%), Gaps = 27/226 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
IVTG++ GIG IA +LA G VV+ AA E+ K E GK L
Sbjct: 29 VAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKI-EAAGGKAL-----TA 82
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
+ D+ +V R G + VL+NNAGI + + ++ + VN
Sbjct: 83 QADVSDPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFN 142
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
L G RIIN+++ + S Y+ +K
Sbjct: 143 TLREAAQRLRVG--GRIINMSTSQ---------------VGLLHPSYGIYAAAKAGVEAM 185
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIP 289
+ +L K L I V V+PG +T++ + ++ L P
Sbjct: 186 THVLSKEL-RGRDITVNAVAPGPTATDLFLEGKSDEVRDRFAKLAP 230
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A Length = 252 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-27
Identities = 48/216 (22%), Positives = 88/216 (40%), Gaps = 24/216 (11%)
Query: 61 PPVNDL---TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKG 117
P + L +VTG++ GIGRE A A GA V++ RN + ++ EE G
Sbjct: 5 PKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEE---TG 61
Query: 118 LPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHM 176
++L + ++ + ++ L +++NAG+ P + + +++ M
Sbjct: 62 RQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVM 121
Query: 177 QVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYS 236
QVN A +L+ L P L++ ++ +S + G R Y+
Sbjct: 122 QVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQG-------------RANWG--AYA 166
Query: 237 GSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272
SK A +L + + V C++PG T
Sbjct: 167 ASKFATEGMMQVLADEY--QQRLRVNCINPGGTRTA 200
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* Length = 260 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-26
Identities = 50/224 (22%), Positives = 83/224 (37%), Gaps = 23/224 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
+VTGSTSGIG IA LA GA +V+ + ++ + K L
Sbjct: 6 VAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVL-----YD 60
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
DL ++V + ++G + +L+NNAGI + F + ++ + +N A
Sbjct: 61 GADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFH 120
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ P + + RIIN+ S V S Y +K + F
Sbjct: 121 GTAAALPHMKKQGFGRIINIASAHGLVASA-------------NKS--AYVAAKHGVVGF 165
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIP 289
+ + A GI + PG V T + A + +
Sbjct: 166 TKVTALET-AGQGITANAICPGWVRTPLVEKQIS-ALAEKNGVD 207
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} Length = 272 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-26
Identities = 53/226 (23%), Positives = 80/226 (35%), Gaps = 28/226 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG+ SG+GR +A LA +G V +A R L A E E L +
Sbjct: 30 IAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETA----AEIGDDAL-----CVP 80
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
D+ DSV A + G + VL NNAG + P + + +++ + N P L
Sbjct: 81 TDVTDPDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFL 140
Query: 186 LSILLFPSLIRGSPS--RIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
+ F + P RIIN S+ + Y+ +K A
Sbjct: 141 CTQEAFRVMKAQEPRGGRIINNGSISATSPRPYS---------------APYTATKHAIT 185
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIP 289
+ I + G T +A+ + V A I
Sbjct: 186 GLTKSTSLDG-RVHDIACGQIDIGNADTPMAQKMKAGVPQADLSIK 230
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} Length = 260 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-26
Identities = 50/227 (22%), Positives = 87/227 (38%), Gaps = 35/227 (15%)
Query: 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLN 121
P+N C+VTG++ GIGR IA QL ++GA V + R+L + Q+ + G+ +
Sbjct: 2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQE-AQSLGGQCV--- 57
Query: 122 IEAMELDLLSLDSVVR-FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSK-------DGYE 173
+ D V F + + G L VL+NNA +K ++
Sbjct: 58 --PVVCDSSQESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWD 115
Query: 174 EHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSV--MHYVGFVDTEDMNVVSGRRKYTS 231
+ V S+ ++ I+ ++S + Y+ V
Sbjct: 116 DINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQYMFNV---------------- 159
Query: 232 LMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
Y K A K ++ L G++ V + PGIV T + ++
Sbjct: 160 --PYGVGKAACDKLAADCAHEL-RRHGVSCVSLWPGIVQTELLKEHM 203
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} Length = 252 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-26
Identities = 42/233 (18%), Positives = 74/233 (31%), Gaps = 25/233 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T V G+ IG EIA++ A G V RN + L+ E G I A
Sbjct: 9 TVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLV----AEIEAAG--GRIVARS 62
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LD + D V F A + PL V I N G + + + + ++ A +
Sbjct: 63 LDARNEDEVTAFLNAAD-AHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVS 121
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
++ +I + + R + ++ +K +
Sbjct: 122 GRESARLMLAHGQGKIFFTGA---------------TASLRGGSGFAAFASAKFGLRAVA 166
Query: 247 SILQKRLPAESGINVV-CVSPGIVSTNVARDL-PKIVQAAYHLIPYFIFNPQE 297
+ + L I+V + V T R+ ++ P + P
Sbjct: 167 QSMAREL-MPKNIHVAHLIIDSGVDTAWVRERREQMFGKDALANPDLLMPPAA 218
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* Length = 258 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-26
Identities = 47/233 (20%), Positives = 93/233 (39%), Gaps = 36/233 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
+VTGS+ G+G+ A +LAE+G ++V+ R+ KAA E ++ E+ K L +
Sbjct: 6 CALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEI-EKLGVKVL-----VV 59
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
+ ++ + + + G L V +NNA + + + ++ M +N
Sbjct: 60 KANVGQPAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNIN-----A 114
Query: 186 LSILLF-----PSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
++L + + I++++S+ + YT+ SK
Sbjct: 115 KALLFCAQEAAKLMEKNGGGHIVSISSL---GS---------IRYLENYTT---VGVSKA 159
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPY 290
A + L L + I V VS G + T+ + P +++ A P
Sbjct: 160 ALEALTRYLAVEL-SPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPA 211
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* Length = 255 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-26
Identities = 54/225 (24%), Positives = 97/225 (43%), Gaps = 25/225 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
I+TG+ +GIG+EIA A +GA VV++ N AAN ++ + Q+ G+ A
Sbjct: 13 CAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL-GGQAF-----ACR 66
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ S + ++ +LG + +L+NNAG +P + ++N + L
Sbjct: 67 CDITSEQELSALADFAISKLGKVDILVNNAGG-GGPKPFDMPMADFRRAYELNVFSFFHL 125
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
S L+ P + + I+ + S ++ K ++ Y+ SK A
Sbjct: 126 SQLVAPEMEKNGGGVILTITS---------------MAAENKNINMTSYASSKAAASHLV 170
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIP 289
+ L E I V ++PG + T+ + + P+I Q P
Sbjct: 171 RNMAFDL-GEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTP 214
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} Length = 276 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-26
Identities = 52/224 (23%), Positives = 88/224 (39%), Gaps = 21/224 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG+++GIG+++A AE+GA V +A R+ A + +E +G G +
Sbjct: 34 RALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVV----ADEIAGVG--GKALPIR 87
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ D V + G LG + + + NAGI S+ + ++ N L
Sbjct: 88 CDVTQPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLT 147
Query: 187 SILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ +++ +G II S+ G + V Y SK A +
Sbjct: 148 AQAAARAMVDQGLGGTIITTASM---SGHIINIPQQVSH----------YCTSKAAVVHL 194
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIP 289
+ + L A I V VSPG + T + L IP
Sbjct: 195 TKAMAVEL-APHQIRVNSVSPGYIRTELVEPLADYHALWEPKIP 237
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} Length = 230 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-26
Identities = 32/206 (15%), Positives = 68/206 (33%), Gaps = 29/206 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG++SG+G E+A+ G + R+ + + L N+
Sbjct: 3 LIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNC---------LSNNVGYRA 53
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
DL S V + E + ++++AG G Q+ + + ++ N + +
Sbjct: 54 RDLASHQEVEQLFEQLDSI---PSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINV 110
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
L P ++ + S + Y K A
Sbjct: 111 LRELVKRYKD-QPVNVVMIMST---AAQQPKAQEST------------YCAVKWAVKGLI 154
Query: 247 SILQKRLPAESGINVVCVSPGIVSTN 272
++ L + ++ V PG ++T
Sbjct: 155 ESVRLEL-KGKPMKIIAVYPGGMATE 179
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} Length = 281 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-26
Identities = 42/226 (18%), Positives = 75/226 (33%), Gaps = 24/226 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG +G+GR IA+ L+ G VV+ R + + A+
Sbjct: 35 IALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVR-----AVV 89
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
D+ D V A L +L+NNAG P ++ + + + + N L
Sbjct: 90 CDVGDPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFL 149
Query: 186 LSILLFPSLIRGSPS--RIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
+ F + +P RIIN S+ ++ Y+ +K A
Sbjct: 150 CTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNS---------------APYTATKHAIT 194
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIP 289
+ I + G +T++ + V A +
Sbjct: 195 GLTKSTALDG-RMHDIACGQIDIGNAATDMTARMSTGVLQANGEVA 239
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* Length = 277 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 1e-25
Identities = 43/227 (18%), Positives = 76/227 (33%), Gaps = 25/227 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+TG SGIG IA G H V+A R+L +K + L +
Sbjct: 29 VAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCL-----PLS 83
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+D+ + +V+ + G + +LIN A + S + ++ M ++ +
Sbjct: 84 MDVRAPPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNV 143
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
S +L+ R I+N+ + + G + +K A +
Sbjct: 144 SRVLYEKFFRDHGGVIVNITATLGNRGQALQ---------------VHAGSAKAAVDAMT 188
Query: 247 SILQKRLPAESGINVVCVSPG-IVSTNVARDL---PKIVQAAYHLIP 289
L I V ++PG I T R L + P
Sbjct: 189 RHLAVEW-GPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASP 234
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A Length = 255 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-25
Identities = 52/205 (25%), Positives = 79/205 (38%), Gaps = 27/205 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IV G T G+G R+L E GA V++ RN + ++ + A+
Sbjct: 10 KAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREE---------FGPRVHALR 60
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ L+ + A LG + +L NAG+ + + S+ Y+ VN
Sbjct: 61 SDIADLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFT 120
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
L P + G I+ +SV G + YS SK A + F+
Sbjct: 121 VQRLTPLIREG--GSIVFTSSVADEGGHP---------------GMSVYSASKAALVSFA 163
Query: 247 SILQKRLPAESGINVVCVSPGIVST 271
S+L L GI V VSPG + T
Sbjct: 164 SVLAAEL-LPRGIRVNSVSPGFIDT 187
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} Length = 262 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-25
Identities = 48/230 (20%), Positives = 81/230 (35%), Gaps = 33/230 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+ +VTG T GIGR IA A +GA+V +A R+ + + + SGK + ++
Sbjct: 12 SVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVI-----GVQ 66
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ + G + V+ NAG+F + + VN
Sbjct: 67 TDVSDRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYA 126
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG------YSGSKL 240
+LI R++ +S+ G + G Y +K
Sbjct: 127 VQACLDALIASGSGRVVLTSSI---TG-----------------PITGYPGWSHYGATKA 166
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
AQ+ F L A I V + PG + T + + + + IP
Sbjct: 167 AQLGFMRTAAIEL-APHKITVNAIMPGNIMTEGLLENGEEYIASMARSIP 215
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} Length = 264 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-25
Identities = 43/224 (19%), Positives = 81/224 (36%), Gaps = 24/224 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+++G +G +AR+ AE GA +V+A R ++ ++ ++ + + L ++
Sbjct: 13 VVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT-GRRAL-----SVG 66
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
D+ V + G + V+INNA +P + + + +++
Sbjct: 67 TDITDDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALR 126
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
L P+L ++NVNS + R Y +K A +
Sbjct: 127 LIQGFTPALEESK-GAVVNVNS---------------MVVRHSQAKYGAYKMAKSALLAM 170
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIP 289
S L L E GI V V PG + + + Y
Sbjct: 171 SQTLATEL-GEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSV 213
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A Length = 270 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-25
Identities = 46/206 (22%), Positives = 82/206 (39%), Gaps = 24/206 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
+VTGS GIG +A L GA VV+ + K A +++ + + + A+
Sbjct: 20 VALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKAL-GSDAI-----AI 73
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
+ D+ + +V+ + G L + ++N+G+ S G + +++ ++ +N
Sbjct: 74 KADIRQVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFF 133
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
++ + L G RI+ +S S YSGSK A F
Sbjct: 134 VAREAYRHLTEG--GRIVLTSS--------------NTSKDFSVPKHSLYSGSKGAVDSF 177
Query: 246 SSILQKRLPAESGINVVCVSPGIVST 271
I K + I V V+PG T
Sbjct: 178 VRIFSKDC-GDKKITVNAVAPGGTVT 202
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} Length = 255 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-25
Identities = 45/217 (20%), Positives = 80/217 (36%), Gaps = 33/217 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTGS G+G A LA +GA V++ E + + KG + +
Sbjct: 11 TALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAES----VDTLTRKG--YDAHGVA 64
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ ++ + + +LINNAGI + + +++ + N + L+
Sbjct: 65 FDVTDELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLV 124
Query: 187 SILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK--LAQI 243
S +I R S +IIN+ S+ V Y+ +K +
Sbjct: 125 SRSAAKRMIARNSGGKIINIGSLTSQAARP-----TVAP----------YTAAKGGIKM- 168
Query: 244 KFSSILQKRLPAE---SGINVVCVSPGIVSTNVARDL 277
L + AE I + PG + T++ L
Sbjct: 169 -----LTCSMAAEWAQFNIQTNAIGPGYILTDMNTAL 200
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* Length = 283 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-25
Identities = 43/206 (20%), Positives = 87/206 (42%), Gaps = 24/206 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
+VTG+ GIGRE+A +L G V++ + ++A E++ ++ +
Sbjct: 31 VALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN-GSDAA-----CV 84
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
+ ++ ++ +VR E G L ++ +N+G+ S G + + + ++ +N
Sbjct: 85 KANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFF 144
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
++ + L G R+I + S + + YSGSK A F
Sbjct: 145 VAREAYKHLEIG--GRLILMGS--------------ITGQAKAVPKHAVYSGSKGAIETF 188
Query: 246 SSILQKRLPAESGINVVCVSPGIVST 271
+ + + A+ I V V+PG + T
Sbjct: 189 ARCMAIDM-ADKKITVNVVAPGGIKT 213
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 Length = 244 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 3e-25
Identities = 42/230 (18%), Positives = 78/230 (33%), Gaps = 39/230 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAH-------VVMAVRNLKAANELIQKWQEEWSGKGLP 119
++TG+ GIGR IA + A + H +V++ R ++ +
Sbjct: 4 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLEC-RAEGALTD- 61
Query: 120 LNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN 179
+ D+ + V R + R G + L+NNAG+ G +++ ++ M N
Sbjct: 62 ----TITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTN 117
Query: 180 HLAPALLSILL-----FPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG 234
L F + R I + S V+ + +
Sbjct: 118 -----LKGTFFLTQALFALMERQHSGHIFFITS---------------VAATKAFRHSSI 157
Query: 235 YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAA 284
Y SK Q ++ + + + V PG V T + + +QA
Sbjct: 158 YCMSKFGQRGLVETMRLYA-RKCNVRITDVQPGAVYTPMWGKVDDEMQAL 206
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-25
Identities = 50/211 (23%), Positives = 82/211 (38%), Gaps = 33/211 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+ GIG+ IA +L + G V +A N A + + + G + A++
Sbjct: 4 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA-GGHAV-----AVK 57
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+D+ D V E LG V++NNAG+ + + + ++ +N +
Sbjct: 58 VDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNIN-----VK 112
Query: 187 SILLF-----PSLIR-GSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
++ + + G +IIN S +G L YS SK
Sbjct: 113 GVIWGIQAAVEAFKKEGHGGKIINACS---------------QAGHVGNPELAVYSSSKF 157
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVST 271
A + + L A GI V PGIV T
Sbjct: 158 AVRGLTQTAARDL-APLGITVNGYCPGIVKT 187
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} Length = 262 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 3e-25
Identities = 51/218 (23%), Positives = 86/218 (39%), Gaps = 33/218 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG++ GIG IAR+L GA VV+ R+++ + ++ G+ +
Sbjct: 31 VAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREI-VAAGGEAE-----SHA 84
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
DL D++ F+ G VL+NNAG+ G P ++ + VN L
Sbjct: 85 CDLSHSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVN-----L 139
Query: 186 LSILLF-----PSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
+ L P++I IIN++S ++G+ Y+ SK
Sbjct: 140 KAPYLLLRAFAPAMIAAKRGHIINISS---------------LAGKNPVADGAAYTASKW 184
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
+ + L + + V V+PG V T L
Sbjct: 185 GLNGLMTSAAEEL-RQHQVRVSLVAPGSVRTEFGVGLS 221
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} Length = 273 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 4e-25
Identities = 46/212 (21%), Positives = 75/212 (35%), Gaps = 27/212 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG+TSGIG A++ GA V + R + I + + ++
Sbjct: 31 IAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAE---------IGGGAVGIQ 81
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D +L + R E G + VL NAG S+ + +++ Y++ N
Sbjct: 82 ADSANLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFT 141
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
P L RG S ++ S G Y+ SK A F+
Sbjct: 142 VQKALPLLARG--SSVVLTGSTAGSTGTPA---------------FSVYAASKAALRSFA 184
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
L + GI + +SPG T +L
Sbjct: 185 RNWILDL-KDRGIRINTLSPGPTETTGLVELA 215
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* Length = 254 | Back alignment and structure |
|---|
Score = 99.9 bits (250), Expect = 4e-25
Identities = 53/239 (22%), Positives = 82/239 (34%), Gaps = 47/239 (19%)
Query: 64 NDL---TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPL 120
NDL T I+TG G+G E ARQ +GA VV+A + ++ L
Sbjct: 1 NDLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARE---------LGD 51
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN- 179
LD+ + R G + L+NNAGI + + S + + + +++N
Sbjct: 52 AARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINL 111
Query: 180 --------HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTS 231
+ PA+ G S I+N++S +G
Sbjct: 112 TGVFIGMKTVIPAMKD--------AGGGS-IVNISSAAGLMGLAL--------------- 147
Query: 232 LMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN-VARDLPKIVQAAYHLIP 289
Y SK S + L I V V PG+ T A + + Y P
Sbjct: 148 TSSYGASKWGVRGLSKLAAVEL-GTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTP 205
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A Length = 255 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 4e-25
Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 25/223 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTGSTSGIG IA+ LA +GA++V+ A K +
Sbjct: 6 TALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAP---ALAEIARHGVKAV-----HHP 57
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
DL + + G + +L+NNAGI + ++F + +++ + +N A
Sbjct: 58 ADLSDVAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHG 117
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ L P + + RIIN+ SV VG + Y +K + +
Sbjct: 118 TRLALPGMRARNWGRIINIASVHGLVGST-------------GKA--AYVAAKHGVVGLT 162
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIP 289
++ A S + + PG V T + + +AA P
Sbjct: 163 KVVGLET-ATSNVTCNAICPGWVLTPLVQKQID-DRAANGGDP 203
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} Length = 251 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 4e-25
Identities = 21/214 (9%), Positives = 56/214 (26%), Gaps = 37/214 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+V G + +G E+ + + + + +
Sbjct: 24 NILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD------------------HSFT 65
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
+ + + E N + + + AG +S G + + +N +
Sbjct: 66 IKDSGEEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFA 125
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ + L +G + + + + + ++ Y +K A
Sbjct: 126 SAHIGAKLLNQG--GLFVLTGA---------------SAALNRTSGMIAYGATKAATHHI 168
Query: 246 SSILQKRL-PAESGINVVCVSPGIVSTNVARDLP 278
L +G + + P + T R
Sbjct: 169 IKDLASENGGLPAGSTSLGILPVTLDTPTNRKYM 202
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* Length = 247 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 4e-25
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 33/216 (15%)
Query: 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLN 121
+ ++TG++SGIG AR LA GA V +A R + E ++ +E + G
Sbjct: 4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRV----EKLRALGDELTAAG--AK 57
Query: 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN-- 179
+ +ELD+ V + LG L +L+NNAGI +G + + + N
Sbjct: 58 VHVLELDVADRQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLL 117
Query: 180 ---HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYS 236
++ A L P L+R + ++ ++S ++GR + Y
Sbjct: 118 GLMYMTRAAL-----PHLLRSKGT-VVQMSS---------------IAGRVNVRNAAVYQ 156
Query: 237 GSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272
+K FS L++ + E G+ VV + PG T
Sbjct: 157 ATKFGVNAFSETLRQEV-TERGVRVVVIEPGTTDTE 191
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} Length = 234 | Back alignment and structure |
|---|
Score = 99.1 bits (248), Expect = 5e-25
Identities = 49/213 (23%), Positives = 78/213 (36%), Gaps = 26/213 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG++ GIG AR L G V + R+ K L E G +
Sbjct: 7 AVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQAL----AAELEG------ALPLP 56
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ R A G L L+NNAG+ + + + + + + N L
Sbjct: 57 GDVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLG 116
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
P+L+R I+NV S ++G+ + Y+ SK + +
Sbjct: 117 IRHAVPALLRRGGGTIVNVGS---------------LAGKNPFKGGAAYNASKFGLLGLA 161
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
L E+ + VV V PG V T A + P
Sbjct: 162 GAAMLDL-REANVRVVNVLPGSVDTGFAGNTPG 193
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 Length = 274 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 6e-25
Identities = 48/225 (21%), Positives = 92/225 (40%), Gaps = 27/225 (12%)
Query: 51 ASHLQNPLPLPPVNDL---TCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELI 106
++ + + P L + TG+ GIGR IA +L GA VV+ + KAA E++
Sbjct: 4 SADITSSGPSDASKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVV 63
Query: 107 QKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQK 166
+ ++ +G+ A++ D+ VV + G L +++N+G+ + +
Sbjct: 64 AEL-KKLGAQGV-----AIQADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELE 117
Query: 167 FSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226
+++ +++ +N ++ RG RII +S + +
Sbjct: 118 VTQELFDKVFNLNTRGQFFVAQQGLKHCRRG--GRIILTSS--------------IAAVM 161
Query: 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
+ Y+GSK A F G+ V C++PG V T
Sbjct: 162 TGIPNHALYAGSKAAVEGFCRAFAVDC-GAKGVTVNCIAPGGVKT 205
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* Length = 302 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 7e-25
Identities = 37/228 (16%), Positives = 77/228 (33%), Gaps = 26/228 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+TG +G+G+ + L+ GA V+A R + ++ + K + +
Sbjct: 28 VAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAI-----Q 82
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ D V G +++INNA I ++ S + ++ + A +
Sbjct: 83 CDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFV 142
Query: 187 SILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
++ + LI + +++ ++ G VV + +K
Sbjct: 143 TLEIGKQLIKAQKGAAFLSITTIYAETGS-----GFVVP----------SASAKAGVEAM 187
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDL----PKIVQAAYHLIP 289
S L + G+ + PG + T A + IP
Sbjct: 188 SKSLAAEW-GKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIP 234
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} Length = 256 | Back alignment and structure |
|---|
Score = 99.1 bits (248), Expect = 7e-25
Identities = 52/225 (23%), Positives = 91/225 (40%), Gaps = 25/225 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG+ +GIGR IA A++GA VV+ + A + + GK + +E
Sbjct: 14 VAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAI-RQAGGKAI-----GLE 67
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
++ +A + G + VL+NNAG +P +E ++N + L
Sbjct: 68 CNVTDEQHREAVIKAALDQFGKITVLVNNAGG-GGPKPFDMPMSDFEWAFKLNLFSLFRL 126
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
S L P + + I+N++S ++G + Y SK A +
Sbjct: 127 SQLAAPHMQKAGGGAILNISS---------------MAGENTNVRMASYGSSKAAVNHLT 171
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIP 289
+ + GI V ++PG + T+ + P+I +A P
Sbjct: 172 RNIAFDV-GPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKHTP 215
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} Length = 244 | Back alignment and structure |
|---|
Score = 98.7 bits (247), Expect = 9e-25
Identities = 31/233 (13%), Positives = 60/233 (25%), Gaps = 39/233 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VT + G L + G VV + A E + E
Sbjct: 3 IALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRF------------ESENPG 50
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEH----MQVNHLA 182
L+ R +A + +++N I + E + +
Sbjct: 51 TIALAEQKPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPL-EGTSEADIRQMFEALSIF 109
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
P LL L + +I + S + Y ++ A
Sbjct: 110 PILLLQSAIAPLRAAGGASVIFITSSVGKKPLA---------------YNPLYGPARAAT 154
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------PKIVQAAYHLIP 289
+ K L + GI + + P + P++ + +P
Sbjct: 155 VALVESAAKTL-SRDGILLYAIGPNFFNNPTYFPTSDWENNPELRERVDRDVP 206
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* Length = 248 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 1e-24
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 26/204 (12%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+T+G G I R+ + G V+ R E +Q+ ++E +LD
Sbjct: 4 LVTGATAGFGECITRRFIQQGHKVIATGRRQ----ERLQELKDELGDNLYIA-----QLD 54
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPALLS 187
+ + ++ + + +L+NNAG+ EP K S + +E + N+ ++
Sbjct: 55 VRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMT 114
Query: 188 ILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSS 247
+ P ++ + IIN+ S +G Y Y +K +FS
Sbjct: 115 RAVLPGMVERNHGHIINIGS---------------TAGSWPYAGGNVYGATKAFVRQFSL 159
Query: 248 ILQKRLPAESGINVVCVSPGIVST 271
L+ L + + V + PG+V
Sbjct: 160 NLRTDL-HGTAVRVTDIEPGLVGG 182
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* Length = 254 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 1e-24
Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 33/217 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
I + GIG + +R+L + + + ++ L E +NI
Sbjct: 7 NVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL-----AELKAINPKVNITFHT 61
Query: 127 LDL-LSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
D+ + + + + +L + +LIN AGI + E + +N
Sbjct: 62 YDVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQ--------IERTIAINFTGLVN 113
Query: 186 LSILLFPSLIR---GSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
+ + + G I N+ S V+G + YS SK A
Sbjct: 114 TTTAILDFWDKRKGGPGGIIANICS---------------VTGFNAIHQVPVYSASKAAV 158
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
+ F++ L K +G+ ++PGI T +
Sbjct: 159 VSFTNSLAKLA-PITGVTAYSINPGITRTPLVHTFNS 194
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} Length = 287 | Back alignment and structure |
|---|
Score = 99.3 bits (248), Expect = 1e-24
Identities = 44/210 (20%), Positives = 91/210 (43%), Gaps = 24/210 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESG---AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
T ++TG+++GIG+ A + E+ +++A R L E +++ ++ + +
Sbjct: 35 TVLITGASAGIGKATALEYLEASNGDMKLILAARRL----EKLEELKKTIDQEFPNAKVH 90
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLA 182
+LD+ + + F E + +L+NNAG + + + + ++ N A
Sbjct: 91 VAQLDITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTA 150
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
++ + P + I+N+ S ++GR Y + Y SK A
Sbjct: 151 LINITQAVLPIFQAKNSGDIVNLGS---------------IAGRDAYPTGSIYCASKFAV 195
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTN 272
F+ L+K L + I V+ ++PG+V T
Sbjct: 196 GAFTDSLRKEL-INTKIRVILIAPGLVETE 224
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} Length = 264 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 1e-24
Identities = 52/211 (24%), Positives = 84/211 (39%), Gaps = 34/211 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG++ GIG IAR+L +GA +++ R I+ E G A
Sbjct: 6 VILITGASGGIGEGIARELGVAGAKILLGARRQ----ARIEAIATEIRDAG--GTALAQV 59
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN-----HL 181
LD+ SV F++A G + VL+NNAG+ + D +E + VN
Sbjct: 60 LDVTDRHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWG 119
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
A+L P + +IIN+ S + + Y +K A
Sbjct: 120 IGAVL-----PIMEAQRSGQIINIGS---------------IGALSVVPTAAVYCATKFA 159
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTN 272
S L++ + I V CV+PG+V +
Sbjct: 160 VRAISDGLRQE---STNIRVTCVNPGVVESE 187
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* Length = 276 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 2e-24
Identities = 45/244 (18%), Positives = 75/244 (30%), Gaps = 43/244 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
++TG IG IA +L + G VV+ + AA L+ + +G +
Sbjct: 13 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAV-----LC 67
Query: 126 ELDLLSLDSVVRFSEAW----NGRLGPLHVLINNAGIF-----------SIGEPQKFSKD 170
+ DL S++ E G VL+NNA + + K
Sbjct: 68 KGDLSLSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDA 127
Query: 171 GYEEHMQVNHLAP-----ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225
E N +AP A R ++N+ M +
Sbjct: 128 QVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPG--------- 178
Query: 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
+ Y+ +K A + L A I V V+PG+ A + +
Sbjct: 179 ---FCV---YTMAKHALGGLTRAAALEL-APRHIRVNAVAPGLSLLPPAMP-QETQEEYR 230
Query: 286 HLIP 289
+P
Sbjct: 231 RKVP 234
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} Length = 258 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 2e-24
Identities = 50/223 (22%), Positives = 86/223 (38%), Gaps = 35/223 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMA--VRNLKAANELIQKWQEEWSGKGLPLNIEA 124
+VTG GIGR I+ +LA G + +A + + A E I+ + K +
Sbjct: 4 VAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAA-DQKAV-----F 57
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPA 184
+ LD+ + + +LG VL+NNAGI I + +++ ++ VN
Sbjct: 58 VGLDVTDKANFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVN----- 112
Query: 185 LLSILLF-----PSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGS 238
+ S+ G +IIN S ++ + + L YS +
Sbjct: 113 VFSVFFGIQAASRKFDELGVKGKIINAAS---------------IAAIQGFPILSAYSTT 157
Query: 239 KLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIV 281
K A + + L A G V +PGIV T + + +
Sbjct: 158 KFAVRGLTQAAAQEL-APKGHTVNAYAPGIVGTGMWEQIDAEL 199
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* Length = 258 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 3e-24
Identities = 49/237 (20%), Positives = 75/237 (31%), Gaps = 41/237 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TGS+ GIG AR A +GA V + R A + G
Sbjct: 9 RVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAA-----FFA 63
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVN-----H 180
DL + ++ + + + + G + VLINNAG +P + Y+ M N
Sbjct: 64 ADLATSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVM 123
Query: 181 LAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG------ 234
L L + G S +I+ S+ G G
Sbjct: 124 TTKFALPHLAAAAKASGQTSAVISTGSI---AG------------------HTGGGPGAG 162
Query: 235 -YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
Y +K + G+ VSPG V T D + + IP
Sbjct: 163 LYGAAKAFLHNVHKNWVDFH-TKDGVRFNIVSPGTVDTAFHADKTQDVRDRISNGIP 218
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} Length = 257 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 3e-24
Identities = 44/228 (19%), Positives = 91/228 (39%), Gaps = 26/228 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
I+TG +SG+G+ +A + A+ GA VV+ R + E + ++ G+ L ++
Sbjct: 8 VVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF-PGQIL-----TVQ 61
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+D+ + D + + E + + G + +LINNA I + S +G+ + +
Sbjct: 62 MDVRNTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYC 121
Query: 187 SILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
S + I +G IIN+ + + V+ + +K +
Sbjct: 122 SQAIGKYWIEKGIKGNIINMVATYAWDAGP-----GVIH----------SAAAKAGVLAM 166
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDL----PKIVQAAYHLIP 289
+ L + GI V ++PG + D ++ + +P
Sbjct: 167 TKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVP 214
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 Length = 265 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 3e-24
Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 24/229 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T IVTG GIG R +A +GA+V + R+ A E+ +K +E+ K A +
Sbjct: 16 TIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTK-----AYQ 70
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN-----HL 181
D+ + D V + + + LGP+ LI NAG+ + + + + + VN +
Sbjct: 71 CDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNT 130
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
A+ + L + I+ +S+ + + ++G Y+ SK A
Sbjct: 131 CRAVAKLW----LQKQQKGSIVVTSSM---SSQIIN--QSSLNGSLTQVF---YNSSKAA 178
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
L A +GI V +SPG V+T+ + KI IP
Sbjct: 179 CSNLVKGLAAEW-ASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIP 226
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} Length = 293 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 4e-24
Identities = 54/230 (23%), Positives = 84/230 (36%), Gaps = 33/230 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+ +VTG T GIGR IA A +GA+V +A R+ + + + + E +G + +
Sbjct: 43 SVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVI-----GVR 97
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LD+ S + G L V+ NAGIF + + E + VN
Sbjct: 98 LDVSDPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYT 157
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG------YSGSKL 240
L R+I +S+ G + G Y SK
Sbjct: 158 VQACLAPLTASGRGRVILTSSI---TG-----------------PVTGYPGWSHYGASKA 197
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
AQ+ F L A G+ V + PG + T D+ + + IP
Sbjct: 198 AQLGFMRTAAIEL-APRGVTVNAILPGNILTEGLVDMGEEYISGMARSIP 246
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A Length = 239 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 4e-24
Identities = 51/228 (22%), Positives = 85/228 (37%), Gaps = 32/228 (14%)
Query: 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124
+ +VTG + GIGR IA L G V +A RN + A + +
Sbjct: 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSLGA--------------VP 47
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPA 184
+ D L D + LG LHVL++ A + + S + + + ++
Sbjct: 48 LPTD-LEKDDPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAF 106
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
LL+ P + R++ + SV F + + + Y+ +K A +
Sbjct: 107 LLAQAAAPHMAEAGWGRVLFIGSV---TTFTAGGPVPIPA----------YTTAKTALLG 153
Query: 245 FSSILQKRLPAESGINVVCVSPGIVSTN---VARDLPKIVQAAYHLIP 289
+ L K A GI V + PG V T R P++ + IP
Sbjct: 154 LTRALAKEW-ARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARIP 200
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} Length = 261 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 4e-24
Identities = 52/241 (21%), Positives = 88/241 (36%), Gaps = 51/241 (21%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG+ SG G +A++ A+ GA VV+ R+ A + E L A+
Sbjct: 11 VALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVA----GEIGDAAL-----AVA 61
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVN------ 179
D+ V EA + G + +L+NNAGI + + + ++ + VN
Sbjct: 62 ADISKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYL 121
Query: 180 ---HLAPALLSILLFPSLIRGSPSR---IINVNSVMHYVGFVDTEDMNVVSGRRKYTSLM 233
L P G+ + I+NV S R +L
Sbjct: 122 MTSKLIPHFKE--------NGAKGQECVILNVAS---------------TGAGRPRPNLA 158
Query: 234 GYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN-----VARDLPKIVQAAYHLI 288
Y+ +K + + L L A + I VV ++P T + D +I + I
Sbjct: 159 WYNATKGWVVSVTKALAIEL-APAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRDSI 217
Query: 289 P 289
P
Sbjct: 218 P 218
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} Length = 281 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 4e-24
Identities = 41/227 (18%), Positives = 79/227 (34%), Gaps = 23/227 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTG SGIG+ +A L +GA V++ RN +Q+ + I
Sbjct: 13 TYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEAL---GANGGAIRYEP 69
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
D+ + D R +A G LH +++ AG P + + + + +N
Sbjct: 70 TDITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMY 129
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ ++RG + ++S+ Y +K A
Sbjct: 130 VLKHAAREMVRGGGGSFVGISSIAASNTH---------------RWFGAYGVTKSAVDHL 174
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIP 289
+ L S + V + PG++ T++ + ++ P
Sbjct: 175 MQLAADEL-GASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTP 220
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A Length = 251 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 5e-24
Identities = 50/235 (21%), Positives = 84/235 (35%), Gaps = 42/235 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
I+TG T GIG IA + E GA V++ R+ + + I+ +
Sbjct: 8 VAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAA----KSVGTPD---QIQFFQ 60
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN------- 179
D D + +A GP+ L+NNAGI ++ + + + + VN
Sbjct: 61 HDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFG 120
Query: 180 --HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
+ + +G + IIN++S+ +VG L Y+
Sbjct: 121 TRLGIQRMKN--------KGLGASIINMSSIEGFVGDPS---------------LGAYNA 157
Query: 238 SKLAQIKFSSILQKRL-PAESGINVVCVSPGIVSTNVARDLP--KIVQAAYHLIP 289
SK A S + + V V PG + T + DLP + + P
Sbjct: 158 SKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTP 212
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 Length = 303 | Back alignment and structure |
|---|
Score = 98.1 bits (245), Expect = 5e-24
Identities = 48/232 (20%), Positives = 94/232 (40%), Gaps = 31/232 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNL----KAANELIQKWQEEWSGKGLPLNI 122
IVTG +GIG+ I ++L E G++VV+A R L AA+EL + +P+
Sbjct: 20 VAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPI-- 77
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA 182
+ ++ + + V ++ G ++ L+NN G + + S G+ ++ N
Sbjct: 78 ---QCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTG 134
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
+ ++ S ++ I+N+ V GF + ++
Sbjct: 135 TFYMCKAVYSSWMKEHGGSIVNI-IVPTKAGFPLA---------------VHSGAARAGV 178
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-----PKIVQAAYHLIP 289
+ L A SGI + CV+PG++ + A + + ++ IP
Sbjct: 179 YNLTKSLALEW-ACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIP 229
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} Length = 260 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 6e-24
Identities = 42/232 (18%), Positives = 86/232 (37%), Gaps = 34/232 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG IG LAE+GA V++A + A + + E+ +G ++ ++
Sbjct: 15 VAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAV----EDLRMEG--HDVSSVV 68
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
+D+ + +SV + + + G + +L+ AGI + + + + + +N L
Sbjct: 69 MDVTNTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDIN-----L 123
Query: 186 LSILLF-----PSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
+ ++ I+ + S+ + N + Y+ SK
Sbjct: 124 NGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIV-------NRPQQQ------AAYNASKA 170
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVST---NVARDLPKIVQAAYHLIP 289
++ L A GI V+P + T + P++ A P
Sbjct: 171 GVHQYIRSLAAEW-APHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTP 221
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 6e-24
Identities = 50/223 (22%), Positives = 85/223 (38%), Gaps = 37/223 (16%)
Query: 67 TCIVTGSTSGIGREIARQLA---ESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
+ ++TG G+G + + L + H+ RN + A EL E+ + NI
Sbjct: 23 SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-----EDLAKNH--SNIH 75
Query: 124 AMELDLLSLDSVVRFSEAWNGRLG--PLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNH 180
+E+DL + D+ + G L+VL NNAGI + +Q N
Sbjct: 76 ILEIDLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNT 135
Query: 181 LAPALLSILLFPSLIRGS-----------PSRIINVNSVMHYVGFVDTEDMNVVSGRRKY 229
+ P +L+ P L + + + IIN++S++ G +
Sbjct: 136 VVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL---GSI---------QGNTD 183
Query: 230 TSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272
+ Y SK A + L L + I V + PG V T+
Sbjct: 184 GGMYAYRTSKSALNAATKSLSVDLYPQ-RIMCVSLHPGWVKTD 225
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} Length = 277 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 7e-24
Identities = 48/221 (21%), Positives = 84/221 (38%), Gaps = 43/221 (19%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG+ +GIG +AR+LA+ G HV+ A + AA+ + A
Sbjct: 31 VAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAA----TKIGCGAA-----ACR 81
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN------- 179
+D+ ++ +A G + L+ NAG+ + + + ++ + +N
Sbjct: 82 VDVSDEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLC 141
Query: 180 --HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
H AP ++ RG I+N++S ++G+ Y
Sbjct: 142 TKHAAPRMIE--------RGG-GAIVNLSS---------------LAGQVAVGGTGAYGM 177
Query: 238 SKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
SK I+ S I L SGI + P V T + +
Sbjct: 178 SKAGIIQLSRITAAEL-RSSGIRSNTLLPAFVDTPMQQTAM 217
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} Length = 253 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 8e-24
Identities = 49/236 (20%), Positives = 85/236 (36%), Gaps = 46/236 (19%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTGS GIG+ A LA GA VV+A N +AA + ++ G + ++
Sbjct: 11 VGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQI-VADGGTAI-----SVA 64
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKF---SKDGYEEHMQVNHLAP 183
+D+ +S ++ G + L+NNA IF + + Y++ M VN
Sbjct: 65 VDVSDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVN---- 120
Query: 184 ALLSILLF-----PSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG---Y 235
L L + + I+N +S + Y
Sbjct: 121 -LDGALWCTRAVYKKMTKRGGGAIVNQSST---AA------------------WLYSNYY 158
Query: 236 SGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIP 289
+K+ + L + L I + ++PG + T R ++V +P
Sbjct: 159 GLAKVGINGLTQQLSREL-GGRNIRINAIAPGPIDTEANRTTTPKEMVDDIVKGLP 213
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} Length = 262 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 8e-24
Identities = 33/228 (14%), Positives = 78/228 (34%), Gaps = 29/228 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVV---MAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
++ G +G A+ A ++V ++ AN+L + +++ K
Sbjct: 13 VIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ-GAKVA----- 66
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAP 183
+ DL + + V + + G + + IN G + S+ ++ +N+
Sbjct: 67 LYQSDLSNEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVA 126
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
+ II + + + + + Y++ Y+G+K
Sbjct: 127 YFFIKQAAKHMNPN--GHIITIATSL------------LAAYTGFYST---YAGNKAPVE 169
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYH--LIP 289
++ K L + I+V ++PG + T+ A+H
Sbjct: 170 HYTRAASKEL-MKQQISVNAIAPGPMDTSFFYGQETKESTAFHKSQAM 216
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* Length = 261 | Back alignment and structure |
|---|
Score = 96.4 bits (241), Expect = 8e-24
Identities = 45/233 (19%), Positives = 90/233 (38%), Gaps = 35/233 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TGS++G+G+ +A + A A VV+ R+ + + + ++ G+ + A++
Sbjct: 9 VVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAI-----AVK 63
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ V+ ++ G L V+INNAG+ + + S + + + N L
Sbjct: 64 GDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTN-----LT 118
Query: 187 SILL-----FPSLIR-GSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
L + +IN++SV + + Y+ SK
Sbjct: 119 GAFLGSREAIKYFVENDIKGTVINMSSV---HEKI---------PWPLFVH---YAASKG 163
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPY 290
+ L A GI V + PG ++T + + P+ +IP
Sbjct: 164 GMKLMTETLALEY-APKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPM 215
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 96.8 bits (242), Expect = 8e-24
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 20/206 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG + G+G IA+ LAE+G VV+A RNL+ A+E QK E++ + + A
Sbjct: 23 VALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETM-----AFR 77
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ + + V + EA + G L ++N AGI ++F D + + ++VN +
Sbjct: 78 CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYV 137
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
F L IIN+ S+ ++ Y+ SK +
Sbjct: 138 CREAFSLLRESDNPSIINIGSLTVEEV-----------TMPNISA---YAASKGGVASLT 183
Query: 247 SILQKRLPAESGINVVCVSPGIVSTN 272
L K GI V ++PG T
Sbjct: 184 KALAKEW-GRYGIRVNVIAPGWYRTK 208
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} Length = 266 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 1e-23
Identities = 47/231 (20%), Positives = 74/231 (32%), Gaps = 41/231 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+ GIG + L +GA V +A R + + +
Sbjct: 30 VALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAADL-----------------HLP 72
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
DL A LG L +++NNAG+ S G + + + + VN AP +
Sbjct: 73 GDLREAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRI 132
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
P + I+NV S G + Y +K A +
Sbjct: 133 CRAAIPLMAAAGGGAIVNVASC---WGLR---------PGPGHAL---YCLTKAALASLT 177
Query: 247 SILQKRLPAESGINVVCVSPGIVST--------NVARDLPKIVQAAYHLIP 289
+ A GI + V P V+T D + V +P
Sbjct: 178 QCMGMDH-APQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVP 227
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} Length = 277 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 1e-23
Identities = 56/242 (23%), Positives = 86/242 (35%), Gaps = 50/242 (20%)
Query: 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
N CIVTG SGIGR A A++GA+VV+A N AA + + +
Sbjct: 26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANE---------IGSKAF 76
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN---- 179
+ +D+ S E + G + VL+NNAG + G ++ ++ M VN
Sbjct: 77 GVRVDVSSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGI 136
Query: 180 -----HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG 234
++ P + G S IIN S +
Sbjct: 137 FLCSKYVIPVMRR--------NGGGS-IINTTS---------------YTATSAIADRTA 172
Query: 235 YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST-------NVARDLPKIVQAAYHL 287
Y SK A + + A+ GI V V+PG + + A+D K+
Sbjct: 173 YVASKGAISSLTRAMAMDH-AKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNAR 231
Query: 288 IP 289
Sbjct: 232 AV 233
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} Length = 255 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 1e-23
Identities = 59/233 (25%), Positives = 93/233 (39%), Gaps = 34/233 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
+VTG++ GIGR IA++LA GA V + + A E + + Q G ++
Sbjct: 9 VALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN-GGSAF-----SI 62
Query: 126 ELDLLSLDSVVRFSEA------WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN 179
+L SL V + +LINNAGI ++ ++ ++ + VN
Sbjct: 63 GANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVN 122
Query: 180 HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
AP + L SRIIN++S R + YS +K
Sbjct: 123 AKAPFFIIQQALSRLRDN--SRIINISSAA---------------TRISLPDFIAYSMTK 165
Query: 240 LAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIP 289
A + L K+L GI V + PG V T++ +L P + Q A +
Sbjct: 166 GAINTMTFTLAKQL-GARGITVNAILPGFVKTDMNAELLSDPMMKQYATTISA 217
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} Length = 346 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 1e-23
Identities = 43/219 (19%), Positives = 81/219 (36%), Gaps = 27/219 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQ------EEWSGKGLPL 120
T +TG++ GIG+ IA + A+ GA++V+A + + +L+ E GK LP
Sbjct: 47 TVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPC 106
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNH 180
+D+ + E + G + +L+NNA S+ + M VN
Sbjct: 107 -----IVDVRDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNT 161
Query: 181 LAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
L S P L + + I+N++ ++ + Y+ +K
Sbjct: 162 RGTYLASKACIPYLKKSKVAHILNISPPLNLNP-------------VWFKQHCAYTIAKY 208
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPG-IVSTNVARDLP 278
+ + + + I V + P + T L
Sbjct: 209 GMSMYVLGMAEEF--KGEIAVNALWPKTAIHTAAMDMLG 245
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} Length = 324 | Back alignment and structure |
|---|
Score = 97.5 bits (243), Expect = 1e-23
Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG++SG GR A LA +G V ++R++ N + ++ +++ +E
Sbjct: 7 IILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDN-DVDLRTLE 65
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LD+ S SV R + G G + VLI+NAG G + F+ + + E +N L+ +
Sbjct: 66 LDVQSQVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRV 125
Query: 187 SILLFPSL-IRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG-YSGSKLAQIK 244
+ P + + +I ++S S + Y +K A
Sbjct: 126 NRAALPHMRRQKH-GLLIWISS---------------SSSAGGTPPYLAPYFAAKAAMDA 169
Query: 245 FSSILQKRLPAESGINVVCVSPGIVSTNVA------RDLPKIVQAAYHLIPY 290
+ + L + GI + PG ++ QA Y P
Sbjct: 170 IAVQYAREL-SRWGIETSIIVPGAFTSGTNHFAHSGVPDDHARQAEYEAGPN 220
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* Length = 291 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 2e-23
Identities = 48/256 (18%), Positives = 74/256 (28%), Gaps = 50/256 (19%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVM-AVRNLKAANELIQKWQEEWSGKGL------- 118
+VTG+ +GR IA L G V + R+ AN L +
Sbjct: 11 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLS 70
Query: 119 -----PLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIF-------------- 159
P++ + A G VL+NNA F
Sbjct: 71 NVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHE 130
Query: 160 SIGEPQKFSKDGYEEHMQVNHLAPALLS------ILLFPSLIRGSPSRIINVNSVMHYVG 213
++ + + N +AP L + P+ RG+ IIN+ M
Sbjct: 131 PCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAM---- 186
Query: 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273
YT Y+ +K A + L A I V V PG+
Sbjct: 187 --------TNQPLLGYTI---YTMAKGALEGLTRSAALEL-APLQIRVNGVGPGLSVLVD 234
Query: 274 ARDLPKIVQAAYHLIP 289
P + + +P
Sbjct: 235 DMP-PAVWEGHRSKVP 249
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* Length = 254 | Back alignment and structure |
|---|
Score = 95.6 bits (239), Expect = 2e-23
Identities = 45/212 (21%), Positives = 82/212 (38%), Gaps = 23/212 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
VTG+ SGIG EI R A SGA +++ R A + +E +
Sbjct: 13 CAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRA----AQELGAAV----AARIV 64
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ +++ + + P+ +L+N+AGI + + + + + M VN
Sbjct: 65 ADVTDAEAMTAAAAEAE-AVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWA 123
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
S +++ I+N+ S+ G + S Y SK A + +
Sbjct: 124 SRAFGRAMVARGAGAIVNLGSMS---GTIVNRPQFASS----------YMASKGAVHQLT 170
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
L A G+ V ++PG V+T + +
Sbjct: 171 RALAAEW-AGRGVRVNALAPGYVATEMTLKMR 201
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* Length = 257 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 2e-23
Identities = 33/222 (14%), Positives = 71/222 (31%), Gaps = 51/222 (22%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+++G +GIG + L +G +V G+ + +
Sbjct: 3 IIVISGCATGIGAATRKVLEAAGHQIV-----------------------GIDIRDAEVI 39
Query: 127 LDLLSLDSVVR-FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
DL + + + ++ + L+ AG+ + + VN+
Sbjct: 40 ADLSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKV-------LGNVVSVNYFGATE 92
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM-------------NVVSGRRKYTSL 232
L P+L +G + ++SV D + +V +
Sbjct: 93 LMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGN 152
Query: 233 MGYSGSKLAQIKFSSILQKRLPAE---SGINVVCVSPGIVST 271
+ Y+GSK A ++ A +G+ + ++PG T
Sbjct: 153 LAYAGSKNALTVAV----RKRAAAWGEAGVRLNTIAPGATET 190
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} Length = 273 | Back alignment and structure |
|---|
Score = 96.1 bits (240), Expect = 2e-23
Identities = 56/209 (26%), Positives = 90/209 (43%), Gaps = 24/209 (11%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG+ SGIGR IA A +GAHV+ R E+ + + + EA+ D
Sbjct: 35 VVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIAD------GGGSAEAVVAD 87
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
L L+ +E + VL+NNAGI + ++ S + E + VN A +LS
Sbjct: 88 LADLEGAANVAEELA-ATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSR 146
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
+++ RI+ + S++ + G NV + Y+ SK A + +
Sbjct: 147 SFGTAMLAHGSGRIVTIASMLSFQGGR-----NVAA----------YAASKHAVVGLTRA 191
Query: 249 LQKRLPAESGINVVCVSPGIVSTNVARDL 277
L A G+ V ++PG V T L
Sbjct: 192 LASEW-AGRGVGVNALAPGYVVTANTAAL 219
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 246 | Back alignment and structure |
|---|
Score = 95.2 bits (238), Expect = 2e-23
Identities = 48/210 (22%), Positives = 74/210 (35%), Gaps = 40/210 (19%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
I+T + GIG+ A A GA V+ N EL + I+
Sbjct: 8 VIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY-----------PGIQTRV 56
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LD+ + +F+ L VL N AG G + ++ M +N +
Sbjct: 57 LDVTKKKQIDQFANEV----ERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLN-----VR 107
Query: 187 SILLF-----PSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
S+ L P ++ IIN++S V S + + YS +K A
Sbjct: 108 SMYLMIKAFLPKMLAQKSGNIINMSS--------------VASSVKGVVNRCVYSTTKAA 153
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVST 271
I + + + GI CV PG V T
Sbjct: 154 VIGLTKSVAADF-IQQGIRCNCVCPGTVDT 182
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} Length = 260 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 3e-23
Identities = 38/205 (18%), Positives = 79/205 (38%), Gaps = 29/205 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG++ GIG + R + VV R++K + + +I +
Sbjct: 30 VVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSAD---------------PDIHTVA 74
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ ++ R R G + L+NNAG+F + +++ Y+ ++ VN +
Sbjct: 75 GDISKPETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHI 134
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ +++ I+++ + + V G S +K +
Sbjct: 135 TQRAAAEMLKQGSGHIVSITTSLVDQPMV---------GMPSAL----ASLTKGGLNAVT 181
Query: 247 SILQKRLPAESGINVVCVSPGIVST 271
L + SG+ V VSPG++ T
Sbjct: 182 RSLAMEF-SRSGVRVNAVSPGVIKT 205
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} Length = 250 | Back alignment and structure |
|---|
Score = 94.9 bits (237), Expect = 3e-23
Identities = 53/238 (22%), Positives = 87/238 (36%), Gaps = 45/238 (18%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG++SG G IA + G V + + E + ++ K L +
Sbjct: 4 VAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVL-----RVR 58
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP---QKFSKDGYEEHMQVN---- 179
D+ V A + G + VL+NNAGI E + +++ M VN
Sbjct: 59 ADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGI 118
Query: 180 -----HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG 234
+ P +L +G+ I+N+ SV V F
Sbjct: 119 FLGCRAVLPHMLL--------QGA-GVIVNIASVASLVAF---------------PGRSA 154
Query: 235 YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIP 289
Y+ SK A ++ + + A SGI V PG++ T + + P++ IP
Sbjct: 155 YTTSKGAVLQLTKSVAVDY-AGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIP 211
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} Length = 285 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 3e-23
Identities = 41/241 (17%), Positives = 86/241 (35%), Gaps = 40/241 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQ------EEWSGKGLPL 120
T ++G + GIG IA+++A GA+V + ++ + +L EE G+ LP+
Sbjct: 11 TMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPI 70
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNH 180
D+ D+V + G + + +NNA ++G ++ ++ +
Sbjct: 71 -----VGDIRDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQV 125
Query: 181 LAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
+S P + I+ ++ + K+ Y +K
Sbjct: 126 RGTYAVSQSCIPHMKGRDNPHILTLSPPIRL--------------EPKWLRPTPYMMAKY 171
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPG-IVSTNVARDLPK-------------IVQAAYH 286
+ + + L ++GI + P V+T ++L AAY
Sbjct: 172 GMTLCALGIAEEL-RDAGIASNTLWPRTTVATAAVQNLLGGDEAMARSRKPEVYADAAYV 230
Query: 287 L 287
+
Sbjct: 231 V 231
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 Length = 263 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 4e-23
Identities = 47/230 (20%), Positives = 79/230 (34%), Gaps = 41/230 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTG+ SGIGR A GA +V R + E + + + A+
Sbjct: 8 TILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAV----AALEAEAI-----AVV 58
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ +V G LH + + AG+ + +E+ ++VN L+
Sbjct: 59 ADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLV 118
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG------YSGSKL 240
+ L G ++ SV G +G Y+ KL
Sbjct: 119 ARKAGEVLEEG--GSLVLTGSV---AG-------------------LGAFGLAHYAAGKL 154
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
+ + L L A G+ V + PG++ T + LP + P
Sbjct: 155 GVVGLARTLALEL-ARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASP 203
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} Length = 266 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 4e-23
Identities = 41/250 (16%), Positives = 78/250 (31%), Gaps = 44/250 (17%)
Query: 55 QNPLPLPPVNDL---TCIVTG-STSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQ 110
+ P + L +VT + +GIG AR+ GA VV++ + + E +
Sbjct: 9 EAPKEIDGHGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLA 68
Query: 111 EEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKD 170
+ G+ A+ D+ S ++V + G L VL+NNAG+ + +
Sbjct: 69 DLGLGRVE-----AVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDE 123
Query: 171 GYEEHMQVN---------HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221
++ + V I+N SV+ +
Sbjct: 124 EWDRVLNVTLTSVMRATRAALRYFRG--------VDHGGVIVNNASVLGWRAQH------ 169
Query: 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PK 279
S Y+ +K + + E G+ + VSP I +
Sbjct: 170 ---------SQSHYAAAKAGVMALTRCSAIEA-VEFGVRINAVSPSIARHKFLEKTSSSE 219
Query: 280 IVQAAYHLIP 289
++
Sbjct: 220 LLDRLASDEA 229
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} Length = 274 | Back alignment and structure |
|---|
Score = 95.0 bits (237), Expect = 4e-23
Identities = 43/221 (19%), Positives = 81/221 (36%), Gaps = 26/221 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQ------EEWSGKGLPL 120
T +TG++ GIG IA + A GA+V +A ++ A +L G+GL L
Sbjct: 8 TLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLAL 67
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNH 180
+ D+ D V A G + +L+NNA + ++ QVN
Sbjct: 68 -----KCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNA 122
Query: 181 LAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
+ + P L++ I+ + + + GY+ +K+
Sbjct: 123 RGSFVCAQACLPHLLQAPNPHILTLAPPPSLNP-------------AWWGAHTGYTLAKM 169
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPG-IVSTNVARDLPKI 280
+ L G+ + + P +++T+ LP +
Sbjct: 170 GMSLVTLGLAAEF-GPQGVAINALWPRTVIATDAINMLPGV 209
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* Length = 247 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 5e-23
Identities = 45/226 (19%), Positives = 79/226 (34%), Gaps = 38/226 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTG+ GIG+ IA +LA GA V+++ N + A K A+
Sbjct: 8 TALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAA----ASIGKKAR-----AIA 58
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ SV G + +L+NNA I D + + + VN ++
Sbjct: 59 ADISDPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIV 118
Query: 187 SILLFPSLIRGSPS-RIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG------YSGSK 239
+ + + R+I++ S G Y +K
Sbjct: 119 TRAGTDQMRAAGKAGRVISIASN---TF------------------FAGTPNMAAYVAAK 157
Query: 240 LAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
I F+ L L + I V+PG++ ++ + P +
Sbjct: 158 GGVIGFTRALATEL-GKYNITANAVTPGLIESDGVKASPHNEAFGF 202
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* Length = 249 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 5e-23
Identities = 50/225 (22%), Positives = 83/225 (36%), Gaps = 36/225 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
++TG +GIGR IA + A GA + +A + A I + L +
Sbjct: 9 LAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAI----RNLGRRVL-----TV 59
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
+ D+ V F + G +L+NNAGI+ + + + + +++ ++N +
Sbjct: 60 KCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEIN-----V 114
Query: 186 LSILLF-----PSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
S L P + R RIIN+ S YT Y +K
Sbjct: 115 DSGFLMAKAFVPGMKRNGWGRIINLTST---TY---------WLKIEAYTH---YISTKA 159
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
A I F+ L L + GI V ++P +V T
Sbjct: 160 ANIGFTRALASDL-GKDGITVNAIAPSLVRTATTEASALSAMFDV 203
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* Length = 260 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 6e-23
Identities = 48/226 (21%), Positives = 80/226 (35%), Gaps = 43/226 (19%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+V+G G+G R + GA VV + + E + +
Sbjct: 9 VALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMA----AELADAAR-----YVH 59
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN------- 179
LD+ + G LHVL+NNAGI +IG + ++ ++ + VN
Sbjct: 60 LDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLG 119
Query: 180 --HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
+ + G S IIN++S+ G V GY+
Sbjct: 120 IRAVVKPMKE--------AGRGS-IINISSIEGLAGTVA---------------CHGYTA 155
Query: 238 SKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQA 283
+K A + L SGI V + PG+V T + +P+ +
Sbjct: 156 TKFAVRGLTKSTALEL-GPSGIRVNSIHPGLVKTPMTDWVPEDIFQ 200
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 Length = 328 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 7e-23
Identities = 48/256 (18%), Positives = 74/256 (28%), Gaps = 50/256 (19%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVM-AVRNLKAANELIQKWQEEWSGKGL------- 118
+VTG+ +GR IA L G V + R+ AN L +
Sbjct: 48 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLS 107
Query: 119 -----PLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIF-------------- 159
P++ + A G VL+NNA F
Sbjct: 108 NVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHE 167
Query: 160 SIGEPQKFSKDGYEEHMQVNHLAPALLS------ILLFPSLIRGSPSRIINVNSVMHYVG 213
++ + + N +AP L + P+ RG+ IIN+ M
Sbjct: 168 PCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAM---- 223
Query: 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273
YT Y+ +K A + L A I V V PG+
Sbjct: 224 --------TNQPLLGYTI---YTMAKGALEGLTRSAALEL-APLQIRVNGVGPGLSVLVD 271
Query: 274 ARDLPKIVQAAYHLIP 289
P + + +P
Sbjct: 272 DMP-PAVWEGHRSKVP 286
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} Length = 266 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 1e-22
Identities = 42/211 (19%), Positives = 86/211 (40%), Gaps = 38/211 (18%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG++SGIG IAR+ +E G +++ R + E ++ N +
Sbjct: 18 LVVITGASSGIGEAIARRFSEEGHPLLLLARRV----ERLKALNLP--------NTLCAQ 65
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN-----HL 181
+D+ + GP ++NNAG+ +G+ + ++ VN +
Sbjct: 66 VDVTDKYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNG 125
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
A+L + + IIN++S ++G++ + Y G+K A
Sbjct: 126 MQAVL-----APMKARNCGTIINISS---------------IAGKKTFPDHAAYCGTKFA 165
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTN 272
S +++ + A S + V+ ++P V T
Sbjct: 166 VHAISENVREEV-AASNVRVMTIAPSAVKTE 195
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 Length = 270 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 1e-22
Identities = 50/231 (21%), Positives = 87/231 (37%), Gaps = 35/231 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG GIG I R SGA VV+ ++ L E+ + +
Sbjct: 11 VVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRAL-----EQELPGAV-----FIL 60
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
D+ D V R G L ++NNAG + ++ S G+ + +++N L
Sbjct: 61 CDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYT 120
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
L+ L P L + + +IN++S++ +G + Y +K A
Sbjct: 121 LTKLALPYLRKSQGN-VINISSLVGAIGQAQ---------------AVPYVATKGAVTAM 164
Query: 246 SSILQKRLPAESGINVVCVSPGIVST-------NVARDLPKIVQAAYHLIP 289
+ L + G+ V C+SPG + T + D ++ P
Sbjct: 165 TKALALDE-SPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQP 214
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} Length = 281 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 1e-22
Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 29/207 (14%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL 129
VTG++SG GR IA +G V+ R +A ++L+ + + EA+ LD+
Sbjct: 10 VTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPD---------RAEAISLDV 60
Query: 130 LSLDSVVR-FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ + ++ R G + VL+NNAG +G ++ ++ + +++ PA L+
Sbjct: 61 TDGERIDVVAADVLA-RYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTR 119
Query: 189 LLFPSL-IRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSS 247
L P + RGS ++N++S G+ + YS +K A + S
Sbjct: 120 ALLPQMRERGSG-SVVNISS---------------FGGQLSFAGFSAYSATKAALEQLSE 163
Query: 248 ILQKRLPAESGINVVCVSPGIVSTNVA 274
L + A GI V+ V PG TN+
Sbjct: 164 GLADEV-APFGIKVLIVEPGAFRTNLF 189
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 93.8 bits (234), Expect = 1e-22
Identities = 59/233 (25%), Positives = 88/233 (37%), Gaps = 34/233 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVM-AVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
IVTG GIG IAR LA SG + + + + + +I + + + +
Sbjct: 31 VAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAEL-SGLGARVI-----FL 84
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQ--KFSKDGYEEHMQVN---- 179
DL L S +A G + L+NNAGI SI + ++ + VN
Sbjct: 85 RADLADLSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGT 144
Query: 180 -HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGS 238
A+L +L IIN+ SV + R + Y S
Sbjct: 145 VFFTQAVLKAMLASDARAS--RSIINITSVSAVMTSP---------ER------LDYCMS 187
Query: 239 KLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY--HLIP 289
K FS L RL AE+GI V V PGI+ +++ + L+P
Sbjct: 188 KAGLAAFSQGLALRL-AETGIAVFEVRPGIIRSDMTAAVSGKYDGLIESGLVP 239
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 1e-22
Identities = 49/227 (21%), Positives = 87/227 (38%), Gaps = 28/227 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
T +V G+ IGR A + A+ GA+VV+ + A + E+ L A+
Sbjct: 10 TIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVA-EIEKLGRSAL-----AI 63
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPA 184
+ DL + V A + G +H L++ AG + + + + + + VN +
Sbjct: 64 KADLTNAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLF 123
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
L + P + +G I+ +S G G + Y+ SK A +
Sbjct: 124 LTAKTALPKMAKG--GAIVTFSSQAGRDG-----------GGPGALA---YATSKGAVMT 167
Query: 245 FSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIP 289
F+ L K + I V V PG++ST P++ +
Sbjct: 168 FTRGLAKEV--GPKIRVNAVCPGMISTTFHDTFTKPEVRERVAGATS 212
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} Length = 250 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 2e-22
Identities = 48/225 (21%), Positives = 70/225 (31%), Gaps = 38/225 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
VTG+ GIG A E+GA V +
Sbjct: 9 NVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQY----------------PFATEV 52
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+D+ V + + L L+N AGI +G + SK+ +++ VN L
Sbjct: 53 MDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNL 112
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG---YSGSKLAQI 243
R I+ V S + R +G Y SK A
Sbjct: 113 FQQTMNQFRRQRGGAIVTVASD---AA---------HTPR------IGMSAYGASKAALK 154
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLI 288
+ + L A SG+ VSPG T++ R L A I
Sbjct: 155 SLALSVGLEL-AGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRI 198
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} Length = 244 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 2e-22
Identities = 39/213 (18%), Positives = 79/213 (37%), Gaps = 35/213 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG + GIG+ + L ++ H V+ + ++ + N++ ++
Sbjct: 6 NYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSA---------------ENLKFIK 50
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
DL + + + + NAGI G + ++ + +N +
Sbjct: 51 ADLTKQQDITNVLDI--IKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYF 108
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
L +L G + I+ S ++ ++ Y+ SK A + +
Sbjct: 109 IKGLENNLKVG--ASIVFNGSDQCFIAKPNSF---------------AYTLSKGAIAQMT 151
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
L L A+ I V V PG V T++ R+L +
Sbjct: 152 KSLALDL-AKYQIRVNTVCPGTVDTDLYRNLIQ 183
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... Length = 288 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 2e-22
Identities = 53/255 (20%), Positives = 89/255 (34%), Gaps = 48/255 (18%)
Query: 60 LPPVNDL---TCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSG 115
+P + + +VTG+ IGR IA +L ++G VV+ + +AA L + +E S
Sbjct: 15 VPRGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSN 74
Query: 116 KGLPLNIEAMELDLLSLDSVVR-----FSEAWNGRLGPLHVLINNAGIFSIG-------- 162
+ + DL + + + + + G VL+NNA F
Sbjct: 75 TAV-----VCQADLTNSNVLPASCEEIINSCFR-AFGRCDVLVNNASAFYPTPLVQGDHE 128
Query: 163 --EPQKFSKDGYEEHMQVNHLAPALLS------ILLFPSLIRGSPSRIINVNSVMHYVGF 214
K + E + N +AP LL+ S I+N+ M
Sbjct: 129 DNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLCDAM----- 183
Query: 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274
V ++ Y+ K A + + L A GI V V+PG+ VA
Sbjct: 184 -------VDQPCMAFSL---YNMGKHALVGLTQSAALEL-APYGIRVNGVAPGVSLLPVA 232
Query: 275 RDLPKIVQAAYHLIP 289
+ +P
Sbjct: 233 MG-EEEKDKWRRKVP 246
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} Length = 272 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 2e-22
Identities = 56/236 (23%), Positives = 94/236 (39%), Gaps = 38/236 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
+VTG + GIG + R A G V + N +AA+ ++ E G+ + A+
Sbjct: 28 VVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITES-GGEAV-----AI 81
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPA 184
D+ + + A + + G L L+NNAGI + + S + E ++VN
Sbjct: 82 PGDVGNAADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVN----- 136
Query: 185 LLSILL--------FPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYS 236
+ +L L G I+NV+S + + T + Y+
Sbjct: 137 VTGSILCAAEAVRRMSRLYSGQGGAIVNVSS--------------MAAILGSATQYVDYA 182
Query: 237 GSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST--NVARDLPKIVQAAYHLIPY 290
SK A F+ L + + A GI V V PGI+ T + + LP + +P
Sbjct: 183 ASKAAIDTFTIGLAREV-AAEGIRVNAVRPGIIETDLHASGGLPDRAREMAPSVPM 237
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* Length = 265 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 2e-22
Identities = 53/240 (22%), Positives = 86/240 (35%), Gaps = 49/240 (20%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
V L ++TG SG+G A +L GA V+ +K L N
Sbjct: 10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKK---------LGNNC 60
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI------FSIGEPQKFSKDGYEEHM 176
D+ S V G+ G + V +N AGI +++ + Q + + ++ +
Sbjct: 61 VFAPADVTSEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVL 120
Query: 177 QVN---------HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRR 227
VN +A + RG IIN SV + G
Sbjct: 121 DVNLMGTFNVIRLVAGEMGQNEPDQGGQRG---VIINTASVAAFEG-------------- 163
Query: 228 KYTSLMG---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAA 284
+G YS SK + + + + L A GI V+ ++PG+ T + LP+ V
Sbjct: 164 ----QVGQAAYSASKGGIVGMTLPIARDL-APIGIRVMTIAPGLFGTPLLTSLPEKVCNF 218
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} Length = 279 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 2e-22
Identities = 53/234 (22%), Positives = 82/234 (35%), Gaps = 42/234 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T VTG +SGIG +AR LA G V R+ K + +
Sbjct: 26 TAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDG-LRAAGHDVD-----GSS 79
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN-----HL 181
D+ S D V A R GP+ +L+N+AG GE + + + N +
Sbjct: 80 CDVTSTDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRV 139
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG------Y 235
+L + RI+N+ S G G Y
Sbjct: 140 TREVLRA---GGMREAGWGRIVNIAST---GG------------------KQGVMYAAPY 175
Query: 236 SGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIP 289
+ SK + F+ + L A++GI V V PG V T +A + + + +
Sbjct: 176 TASKHGVVGFTKSVGFEL-AKTGITVNAVCPGYVETPMAERVREGYARHWGVTE 228
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} Length = 254 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 2e-22
Identities = 52/228 (22%), Positives = 83/228 (36%), Gaps = 41/228 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG+ SGIGR IA++ A + + VV N+++Q+ + + L ++
Sbjct: 9 VVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM-GKEVL-----GVK 62
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVN------ 179
D+ V F + VL NNAGI P + S + +E + VN
Sbjct: 63 ADVSKKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFY 122
Query: 180 ---HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYS 236
+ P +L +G I+N S+ G Y+
Sbjct: 123 SSRAVIPIMLK--------QGK-GVIVNTASIAGIRGGFAGA---------------PYT 158
Query: 237 GSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAA 284
+K I + + + GI V V PG V TN+ K +
Sbjct: 159 VAKHGLIGLTRSIAAHY-GDQGIRAVAVLPGTVKTNIGLGSSKPSELG 205
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} Length = 283 | Back alignment and structure |
|---|
Score = 92.6 bits (231), Expect = 3e-22
Identities = 49/223 (21%), Positives = 79/223 (35%), Gaps = 39/223 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG+ SGIGR A LA G V R E+ + G+ + A+E
Sbjct: 30 VALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEI-VGAGGQAI-----ALE 83
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVN------ 179
D+ + + G L +++ NAGI + P ++E + VN
Sbjct: 84 ADVSDELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFL 143
Query: 180 ---HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYS 236
P L RG I+ V+S+ G + Y+
Sbjct: 144 TLHLTVPYLKQ--------RGG-GAIVVVSSI---NGTRTFTTPGATA----------YT 181
Query: 237 GSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
+K AQ+ L L + I V V PG + TN++ +
Sbjct: 182 ATKAAQVAIVQQLALEL-GKHHIRVNAVCPGAIETNISDNTKL 223
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 Length = 262 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 4e-22
Identities = 46/228 (20%), Positives = 83/228 (36%), Gaps = 41/228 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
C+VTG+ IG A +LAE G + + N +A + +E+ + +
Sbjct: 9 VCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK-GVEAR-----SYV 62
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVN------ 179
D+ S ++V+ ++ G + L NNAG P Q + D + + +N
Sbjct: 63 CDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFH 122
Query: 180 ---HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYS 236
++ +++ + RI+N S+ G + + Y
Sbjct: 123 VLKAVSRQMIT--------QNY-GRIVNTASMAGVKGPPN---------------MAAYG 158
Query: 237 GSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAA 284
SK A I + L A I V +SPG + + +QA
Sbjct: 159 TSKGAIIALTETAALDL-APYNIRVNAISPGYMGPGFMWERQVELQAK 205
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* Length = 281 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 5e-22
Identities = 38/224 (16%), Positives = 75/224 (33%), Gaps = 46/224 (20%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG SG+GR + + GA V + ++ + EL G + +
Sbjct: 7 VALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELE----VAHGGNAV-----GVV 57
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQK-----FSKDGYEEHMQVNHL 181
D+ SL R +E G + LI NAGI+ +++ VN
Sbjct: 58 GDVRSLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVN-- 115
Query: 182 APALLSILL-----FPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYS 236
+ + P+L+ ++ S + Y+
Sbjct: 116 ---VKGYIHAVKACLPALVSSR-GSVVFTISNAGFYPNG---------------GGPLYT 156
Query: 237 GSKLAQIKFSSILQKRLPAE--SGINVVCVSPGIVSTNVARDLP 278
+K A + +++ E + V V+PG ++T++
Sbjct: 157 ATKHAVVGLV----RQMAFELAPHVRVNGVAPGGMNTDLRGPSS 196
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* Length = 277 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 5e-22
Identities = 56/234 (23%), Positives = 92/234 (39%), Gaps = 42/234 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+TSGIG EIAR+L + G V + R + + +E G + +
Sbjct: 24 VALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTL----KELREAG--VEADGRT 77
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN-----HL 181
D+ S+ + A R GP+ VL+NNAG G + + + + + ++ N +
Sbjct: 78 CDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRV 137
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG------Y 235
+L ++ RI+N+ S G G Y
Sbjct: 138 TKQVLKA---GGMLERGTGRIVNIAST---GG------------------KQGVVHAAPY 173
Query: 236 SGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIP 289
S SK + F+ L L A +GI V V PG V T +A + + + +
Sbjct: 174 SASKHGVVGFTKALGLEL-ARTGITVNAVCPGFVETPMAASVREHYSDIWEVST 226
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 Length = 256 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 5e-22
Identities = 56/230 (24%), Positives = 86/230 (37%), Gaps = 35/230 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG GIGR IA+ A GA V + + + + G +
Sbjct: 8 GVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGK-------EVAEAIGGA-----FFQ 55
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+DL VRF E LG + VL+NNA I + G + ++VN AP L
Sbjct: 56 VDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHL 115
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
S L + + I+NV SV G ++ + Y+ SK + +
Sbjct: 116 SALAAREMRKVGGGAIVNVASV---QGLF---------AEQENAA---YNASKGGLVNLT 160
Query: 247 SILQKRLPAESGINVVCVSPGIVST-------NVARDLPKIVQAAYHLIP 289
L L A I V V+PG ++T ++ D + + L
Sbjct: 161 RSLALDL-APLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHA 209
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A Length = 266 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 6e-22
Identities = 58/239 (24%), Positives = 96/239 (40%), Gaps = 56/239 (23%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+T GIG IAR GA V + E+ L ++
Sbjct: 29 KALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAAD---------LGKDVFVFS 79
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG---------YEEHMQ 177
+L S+ + +E + + +L+NNAGI ++DG +++ +
Sbjct: 80 ANLSDRKSIKQLAEVAEREMEGIDILVNNAGI---------TRDGLFVRMQDQDWDDVLA 130
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG--- 234
VN A + L+ L S++R RIIN+ S+ VG ++G
Sbjct: 131 VNLTAASTLTRELIHSMMRRRYGRIINITSI---VG------------------VVGNPG 169
Query: 235 ---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
Y +K I FS L + + A I V C++PG + + + L K +A +IP
Sbjct: 170 QTNYCAAKAGLIGFSKALAQEI-ASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIP 227
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} Length = 257 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 7e-22
Identities = 52/238 (21%), Positives = 82/238 (34%), Gaps = 47/238 (19%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
+ IVTG++SG+G + R LA+ GA V+ A E + L +
Sbjct: 5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAE---------LGAAV 55
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFS----IGEPQKFSKDGYEEHMQV 178
D+ + G +H L+N AG +G + D + + V
Sbjct: 56 RFRNADVTNEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAV 115
Query: 179 N---------HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKY 229
N A + RG I+N S+ + G
Sbjct: 116 NLIGTFNMIRLAAEVMSQGEPDADGERG---VIVNTASIAAFDG---------------- 156
Query: 230 TSLMG---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAA 284
+G Y+ SK + + L A GI VV ++PGI T + +P+ VQ A
Sbjct: 157 --QIGQAAYAASKGGVAALTLPAAREL-ARFGIRVVTIAPGIFDTPMMAGMPQDVQDA 211
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} Length = 271 | Back alignment and structure |
|---|
Score = 91.4 bits (228), Expect = 8e-22
Identities = 44/236 (18%), Positives = 78/236 (33%), Gaps = 47/236 (19%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
I+TG+ GIG E +R LA +GA VV+A +
Sbjct: 13 VAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAA----ASVGRGAV-----HHV 63
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP--QKFSKDGYEEHMQVN----- 179
+DL + SV + G L ++ NNA + + + D +++ VN
Sbjct: 64 VDLTNEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTM 123
Query: 180 ----HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGY 235
+ P L+S G + I+N++S + + Y
Sbjct: 124 LMCKYAIPRLIS--------AGGGA-IVNISSATAHAAYDM---------------STAY 159
Query: 236 SGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIP 289
+ +K A + + + G+ ++PG+V T IV
Sbjct: 160 ACTKAAIETLTRYVATQY-GRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHHL 214
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* Length = 241 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 8e-22
Identities = 28/212 (13%), Positives = 57/212 (26%), Gaps = 35/212 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
+V G +G + V V + A+ + ++
Sbjct: 9 RVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVI--------------VKMT 54
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPA 184
+ D V G + ++ AG ++ G K + + +
Sbjct: 55 DSFTEQADQVTAEVGKLLG-DQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTST 113
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
+ S L L G + + + ++GY +K A +
Sbjct: 114 ISSHLATKHLKEG--GLLTLAGA---------------KAALDGTPGMIGYGMAKGAVHQ 156
Query: 245 FSSILQKRL-PAESGINVVCVSPGIVSTNVAR 275
L + SG + V P + T + R
Sbjct: 157 LCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNR 188
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3q6i_A* 3m1l_A Length = 454 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 1e-21
Identities = 58/244 (23%), Positives = 100/244 (40%), Gaps = 55/244 (22%)
Query: 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLN 121
P++ +VTG+ GIG IA A GA VV ++ A E +++ ++ G L L+
Sbjct: 210 PLDGKVAVVTGAARGIGATIAEVFARDGATVV--AIDVDGAAEDLKRVADKVGGTALTLD 267
Query: 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGY-----EEH- 175
+ A + ++D + +G G + +L+NNAGI ++D E+
Sbjct: 268 VTADD----AVDKITAHVTEHHG--GKVDILVNNAGI---------TRDKLLANMDEKRW 312
Query: 176 ---MQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSL 232
+ VN LAP L+ L + G R+I ++S+ G +
Sbjct: 313 DAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSM---AG------------------I 351
Query: 233 MG------YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAY 285
G Y+ +K I + L L A+ GI + V+PG + T + +P +
Sbjct: 352 AGNRGQTNYATTKAGMIGLAEALAPVL-ADKGITINAVAPGFIETKMTEAIPLATREVGR 410
Query: 286 HLIP 289
L
Sbjct: 411 RLNS 414
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} Length = 247 | Back alignment and structure |
|---|
Score = 90.2 bits (225), Expect = 1e-21
Identities = 53/239 (22%), Positives = 90/239 (37%), Gaps = 53/239 (22%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG++ GIG E+A LA GA VV + +A + + KG +
Sbjct: 7 VALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKF----ENSMKEKG--FKARGLV 60
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG---------YEEHMQ 177
L++ ++S+ F + +L+NNAGI ++D ++ +
Sbjct: 61 LNISDIESIQNFFAEIKAENLAIDILVNNAGI---------TRDNLMMRMSEDEWQSVIN 111
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG--- 234
N + +S +++ RII++ SV VG G
Sbjct: 112 TNLSSIFRMSKECVRGMMKKRWGRIISIGSV---VG------------------SAGNPG 150
Query: 235 ---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
Y +K I FS L + A I V V+PG ++T++ L + IP
Sbjct: 151 QTNYCAAKAGVIGFSKSLAYEV-ASRNITVNVVAPGFIATDMTDKLTDEQKSFIATKIP 208
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} PDB: 3rsh_A* 3rro_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E Length = 248 | Back alignment and structure |
|---|
Score = 90.2 bits (225), Expect = 1e-21
Identities = 57/239 (23%), Positives = 99/239 (41%), Gaps = 56/239 (23%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG++ GIG+ IA LAE GA V+ + A + + G + M
Sbjct: 11 VALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAIS----DYLGDNG-----KGMA 61
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG---------YEEHMQ 177
L++ + +S+ +A G + +L+NNAGI ++D + + M+
Sbjct: 62 LNVTNPESIEAVLKAITDEFGGVDILVNNAGI---------TRDNLLMRMKEEEWSDIME 112
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG--- 234
N + LS + +++ RIINV SV VG MG
Sbjct: 113 TNLTSIFRLSKAVLRGMMKKRQGRIINVGSV---VG------------------TMGNAG 151
Query: 235 ---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
Y+ +K I F+ + + + A G+ V V+PG + T++ + L + A +P
Sbjct: 152 QANYAAAKAGVIGFTKSMAREV-ASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQVP 209
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} Length = 264 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 1e-21
Identities = 54/242 (22%), Positives = 91/242 (37%), Gaps = 50/242 (20%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEE-WSGKGLPLNIEAM 125
+VTG+ SGIGR ++ +LA GA V + AA E ++ N A
Sbjct: 9 LALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAF 68
Query: 126 ELDLLSLDSVVRFSEAWNGRLG-PLHVLINNAGIFSIGEPQKFSKDGY-----EEH---- 175
+ D+ + E P V+++ AGI ++D + E+
Sbjct: 69 QADVSEARAARCLLEQVQACFSRPPSVVVSCAGI---------TQDEFLLHMSEDDWDKV 119
Query: 176 MQVNHLAPALLSILLFPSLIRGSPS-RIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG 234
+ VN L++ +L+ IIN++S+ VG +G
Sbjct: 120 IAVNLKGTFLVTQAAAQALVSNGCRGSIINISSI---VG------------------KVG 158
Query: 235 ------YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHL 287
Y+ SK I + + L GI V PG ++T + + +P K+V +
Sbjct: 159 NVGQTNYAASKAGVIGLTQTAAREL-GRHGIRCNSVLPGFIATPMTQKVPQKVVDKITEM 217
Query: 288 IP 289
IP
Sbjct: 218 IP 219
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* Length = 248 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 2e-21
Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 52/239 (21%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTGST GIGR IA +LA +G+ V++ + + A + ++ ++ K +E
Sbjct: 9 VSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKA-----HGVE 63
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG---------YEEHMQ 177
++LLS +S+ + E + + +L+NNAGI ++D +EE ++
Sbjct: 64 MNLLSEESINKAFEEIYNLVDGIDILVNNAGI---------TRDKLFLRMSLLDWEEVLK 114
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG--- 234
VN L++ +I+ RI+N++SV VG G
Sbjct: 115 VNLTGTFLVTQNSLRKMIKQRWGRIVNISSV---VG------------------FTGNVG 153
Query: 235 ---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
YS +K I F+ L K L A + V V+PG + T++ L +I Q IP
Sbjct: 154 QVNYSTTKAGLIGFTKSLAKEL-APRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQIP 211
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} PDB: 3gdf_A Length = 267 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 2e-21
Identities = 47/252 (18%), Positives = 86/252 (34%), Gaps = 44/252 (17%)
Query: 55 QNPLPLPPVNDL------TCIVTGS--TSGIGREIARQLAESGAHVVMA-VRNLKAANEL 105
Q + D +VTG+ G+G E AR AE GA V + + A E
Sbjct: 4 QQATKHESLLDQLSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEEN 63
Query: 106 IQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQ 165
+++ ++ + K A + + S +S + + G + I NAG +
Sbjct: 64 VKELEKTYGIKAK-----AYKCQVDSYESCEKLVKDVVADFGQIDAFIANAGATADSGIL 118
Query: 166 KFSKDGYEEHMQVNHLAPALLSILLF-----PSLIRGSPSRIINVNSVMHYVGFVDTEDM 220
S + + +QV+ L ++ S+ G +
Sbjct: 119 DGSVEAWNHVVQVD-----LNGTFHCAKAVGHHFKERGTGSLVITASM---SGHIANFPQ 170
Query: 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAE--SGINVVCVSPGIVSTNVARDLP 278
S Y+ +K I + + L E V +SPG + T ++ +P
Sbjct: 171 EQTS----------YNVAKAGCIHMA----RSLANEWRDFARVNSISPGYIDTGLSDFVP 216
Query: 279 -KIVQAAYHLIP 289
+ Q + +IP
Sbjct: 217 KETQQLWHSMIP 228
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} Length = 256 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 2e-21
Identities = 51/225 (22%), Positives = 89/225 (39%), Gaps = 33/225 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
VTG GIG I ++L + G VV + KW E+ G + A E
Sbjct: 15 IAYVTGGMGGIGTSICQRLHKDGFRVVA---GCGPNSPRRVKWLEDQKALG--FDFYASE 69
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
++ DS + + +G + VL+NNAGI +K +++ ++ + N + +
Sbjct: 70 GNVGDWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNV 129
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG------YSGSKL 240
+ + ++ RIIN++SV G G YS +K
Sbjct: 130 TKQVIDGMVERGWGRIINISSV---NG------------------QKGQFGQTNYSTAKA 168
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
F+ L + + A G+ V VSPG + T++ + + V
Sbjct: 169 GIHGFTMSLAQEV-ATKGVTVNTVSPGYIGTDMVKAIRPDVLEKI 212
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 Length = 236 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-21
Identities = 26/207 (12%), Positives = 61/207 (29%), Gaps = 33/207 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IV G +G I ++G V+ + + + + +
Sbjct: 5 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLS-----------ANDQADSNILV---DGN 50
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
+ + + A + + + + AG ++ G K + ++ + + A+
Sbjct: 51 KNWTEQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAI 110
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ L L G + + S++GY +K A
Sbjct: 111 AAKLATTHLKPG--GLLQLTGAAAAMGPT---------------PSMIGYGMAKAAVHHL 153
Query: 246 SSILQKRL-PAESGINVVCVSPGIVST 271
+S L + V+ + P + T
Sbjct: 154 TSSLAAKDSGLPDNSAVLTIMPVTLDT 180
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 90.0 bits (224), Expect = 2e-21
Identities = 47/218 (21%), Positives = 85/218 (38%), Gaps = 33/218 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+ GIGR A L GA V + NL+A + E++ + ++
Sbjct: 9 VALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQ----KTLFIQ 64
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ + G L +L+NNAG+ ++ +E+ +Q+N ++
Sbjct: 65 CDVADQQQLRDTFRKVVDHFGRLDILVNNAGV--------NNEKNWEKTLQINLVSVISG 116
Query: 187 SILLFPSLIR---GSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
+ L + + G IIN++S+ + Y SK +
Sbjct: 117 TYLGLDYMSKQNGGEGGIIINMSSLAGLMPVA---------------QQPVYCASKHGIV 161
Query: 244 KF--SSILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
F S+ L L SG+ + + PG V+T + + K
Sbjct: 162 GFTRSAALAANL-MNSGVRLNAICPGFVNTAILESIEK 198
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} Length = 270 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 4e-21
Identities = 58/239 (24%), Positives = 95/239 (39%), Gaps = 53/239 (22%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG++ GIGR IA +LA GA V+ A + + ++ +G
Sbjct: 30 VAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAF-KQAGLEG-----RGAV 83
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG---------YEEHMQ 177
L++ +V E+ G L+VL+NNAGI ++D ++ +
Sbjct: 84 LNVNDATAVDALVESTLKEFGALNVLVNNAGI---------TQDQLAMRMKDDEWDAVID 134
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG--- 234
N A LS + +++ RI+N+ SV VG G
Sbjct: 135 TNLKAVFRLSRAVLRPMMKARGGRIVNITSV---VG------------------SAGNPG 173
Query: 235 ---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
Y+ +K + L + + GI V CV+PG + T++ + LP + A IP
Sbjct: 174 QVNYAAAKAGVAGMTRALAREI-GSRGITVNCVAPGFIDTDMTKGLPQEQQTALKTQIP 231
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} Length = 202 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 4e-21
Identities = 29/215 (13%), Positives = 69/215 (32%), Gaps = 47/215 (21%)
Query: 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
N + ++ G++ +G + +L + A V+ A R +
Sbjct: 2 NAMKILLIGASGTLGSAVKERLEK-KAEVITAGR-----------------------HSG 37
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAP 183
+ +D+ ++DS+ + E ++G + +++ G + + + + +
Sbjct: 38 DVTVDITNIDSIKKMYE----QVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQ 93
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
L +L SL +M V + + A
Sbjct: 94 INLVLLGIDSLNDK--GSFTLTTGIMMEDPIVQGAS---------------AAMANGAVT 136
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
F+ +P GI + VSP ++ + + P
Sbjct: 137 AFAKSAAIEMP--RGIRINTVSPNVLEESWDKLEP 169
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} Length = 280 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 4e-21
Identities = 56/238 (23%), Positives = 77/238 (32%), Gaps = 45/238 (18%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG++SGIGR A A GA VV+ RN A EL + G+ A+
Sbjct: 10 IAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG-GGEAA-----ALA 63
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVN------ 179
D+ E R G L NNAG S +G+ E + N
Sbjct: 64 GDVGDEALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFL 123
Query: 180 ---HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYS 236
+ PA+ + G S + +S + + G Y+
Sbjct: 124 AAKYQVPAIAA--------LGGGS-LTFTSSFVGHTA-----------GFAGVAP---YA 160
Query: 237 GSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST-----NVARDLPKIVQAAYHLIP 289
SK I L L GI V + PG T N+ P+ L
Sbjct: 161 ASKAGLIGLVQALAVEL-GARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHA 217
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 Length = 249 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 4e-21
Identities = 39/211 (18%), Positives = 77/211 (36%), Gaps = 37/211 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+V ++ GIGR +A L++ GA V + RN + + + + ++
Sbjct: 21 GVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL--------KRSGHRYVVCDLRKDL 72
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
L ++ + +L+ NAG G + + + ++E + L +
Sbjct: 73 DLLFE-------------KVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKI 119
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
P++ RI+ + S S +L + +++A F
Sbjct: 120 VRNYLPAMKEKGWGRIVAITS---------------FSVISPIENLYTSNSARMALTGFL 164
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDL 277
L + A GI V CV+PG T ++L
Sbjct: 165 KTLSFEV-APYGITVNCVAPGWTETERVKEL 194
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 Length = 253 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 5e-21
Identities = 47/215 (21%), Positives = 74/215 (34%), Gaps = 44/215 (20%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG SG+G E+ + L GA V + N A +L + L +
Sbjct: 8 VALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAE---------LGERSMFVR 58
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN------- 179
D+ S A RLG L+VL+NNAGI G+ + + + +++N
Sbjct: 59 HDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIG 118
Query: 180 --HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
A+ + + IIN+ SV ++ GYS
Sbjct: 119 CQQGIAAM----------KETGGSIINMASVSSWLPIEQ---------------YAGYSA 153
Query: 238 SKLAQIKFSSILQKRL-PAESGINVVCVSPGIVST 271
SK A + I V + P + T
Sbjct: 154 SKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYT 188
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 Length = 285 | Back alignment and structure |
|---|
Score = 89.2 bits (222), Expect = 6e-21
Identities = 55/239 (23%), Positives = 99/239 (41%), Gaps = 53/239 (22%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+ GIGREIA+ LA+S +HV+ R K+ + ++ + + + +
Sbjct: 46 VALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEI-KSFGYES-----SGYA 99
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG---------YEEHMQ 177
D+ + + + +L+NNAGI ++D +E+ ++
Sbjct: 100 GDVSKKEEISEVINKILTEHKNVDILVNNAGI---------TRDNLFLRMKNDEWEDVLR 150
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG--- 234
N + ++ + +I RIIN++S+ VG L G
Sbjct: 151 TNLNSLFYITQPISKRMINNRYGRIINISSI---VG------------------LTGNVG 189
Query: 235 ---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
YS SK I F+ L K L A I V ++PG +S+++ + +I + IP
Sbjct: 190 QANYSSSKAGVIGFTKSLAKEL-ASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIP 247
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} Length = 269 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 7e-21
Identities = 56/232 (24%), Positives = 89/232 (38%), Gaps = 37/232 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVM-AVRNLKAANELIQKWQEEWSGKGLPLNIEAM 125
VTG G+G I+R+L ++G V + W G + +A
Sbjct: 27 VAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHV----STWLMHERDAG--RDFKAY 80
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
+D+ +S R +E G + VLINNAGI K +K ++ M+ + A
Sbjct: 81 AVDVADFESCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFN 140
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG------YSGSK 239
++ ++ RI+N+ SV G G Y+ +K
Sbjct: 141 VTKQFIAGMVERRFGRIVNIGSV---NG------------------SRGAFGQANYASAK 179
Query: 240 LAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHL--IP 289
F+ L A+ GI V VSPG ++T + +P+ V A L IP
Sbjct: 180 AGIHGFTKTLALET-AKRGITVNTVSPGYLATAMVEAVPQDVLEAKILPQIP 230
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} Length = 269 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 7e-21
Identities = 45/216 (20%), Positives = 74/216 (34%), Gaps = 55/216 (25%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG +SGIG + L GA VV + K+ + + +
Sbjct: 16 VAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDVNV----------------SDHFK 59
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN------- 179
+D+ + + V E + G + +L+NNAGI + + + VN
Sbjct: 60 IDVTNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLM 119
Query: 180 --HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
+ P +L+ G S IIN+ SV Y + Y
Sbjct: 120 AKYTIPVMLA--------IGHGS-IINIASVQSYAATKNAA---------------AYVT 155
Query: 238 SKLAQIKFSSILQKRLPAE--SGINVVCVSPGIVST 271
SK A + + + + + I V PG + T
Sbjct: 156 SKHALLGLT----RSVAIDYAPKIRCNAVCPGTIMT 187
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} Length = 279 | Back alignment and structure |
|---|
Score = 88.8 bits (221), Expect = 8e-21
Identities = 46/246 (18%), Positives = 84/246 (34%), Gaps = 34/246 (13%)
Query: 55 QNPLPLPPVNDL------TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQK 108
+ P V DL VTGS+ GIG +A A++GA V + + A +
Sbjct: 18 KAPTLSKNVLDLFSLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKA--- 74
Query: 109 WQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP--QK 166
+ G ++ +A + ++ SV G + V + NAG+ P
Sbjct: 75 -EHLQKTYG--VHSKAYKCNISDPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDV 131
Query: 167 FSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226
+ D + + + V+ S + + +I +S+ G +
Sbjct: 132 DNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSI---SGKIVNIPQLQAP-- 186
Query: 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAE--SGINVVCVSPGIVSTNVARDLP-KIVQA 283
Y+ +K A + K L E V +SPG + T++ +
Sbjct: 187 --------YNTAKAACTHLA----KSLAIEWAPFARVNTISPGYIDTDITDFASKDMKAK 234
Query: 284 AYHLIP 289
+ L P
Sbjct: 235 WWQLTP 240
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* Length = 254 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 9e-21
Identities = 36/218 (16%), Positives = 66/218 (30%), Gaps = 41/218 (18%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
IVT G A +L+E+G V + K +EL +L
Sbjct: 5 IVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA------------FAETYPQLK 52
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPALLS 187
+S EA G + VL++N +P K++ + Y ++ + P L
Sbjct: 53 PMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALV 112
Query: 188 ILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG------YSGSKLA 241
+ + + II + S Y+ ++
Sbjct: 113 NAVASQMKKRKSGHIIFITSAT---------------------PFGPWKELSTYTSARAG 151
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
++ L K L E I V + P + + +
Sbjct: 152 ACTLANALSKEL-GEYNIPVFAIGPNYLHSEDSPYFYP 188
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 245 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 1e-20
Identities = 45/230 (19%), Positives = 79/230 (34%), Gaps = 41/230 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG+ GIGR A+ GA +V E + + +
Sbjct: 7 AVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEA-----------VGAHPVV 55
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+D+ SV R LG L +++ AGI K + +E ++VN L+
Sbjct: 56 MDVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLV 115
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG------YSGSKL 240
+ ++ +P I+ S V +G Y+ S
Sbjct: 116 AKAASEAMREKNPGSIVLTASR---VY-------------------LGNLGQANYAASMA 153
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
+ + L L GI V ++PG + T + +P K+ + A P
Sbjct: 154 GVVGLTRTLALEL-GRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATP 202
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 Length = 267 | Back alignment and structure |
|---|
Score = 88.0 bits (219), Expect = 1e-20
Identities = 41/242 (16%), Positives = 78/242 (32%), Gaps = 48/242 (19%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG SG+GR A +LA GA + + + + E +
Sbjct: 15 VVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLET----APDAEVLTTV 70
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVN------ 179
D+ V + A R G + NNAGI P + F+ +++ + +N
Sbjct: 71 ADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFL 130
Query: 180 ---HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYS 236
+ + +GS ++N SV G + GY+
Sbjct: 131 GLEKVLKIMRE--------QGSGM-VVNTASVGGIRGIG---------------NQSGYA 166
Query: 237 GSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---------PKIVQAAYHL 287
+K + + GI + ++PG + T + + K + +
Sbjct: 167 AAKHGVVGLTRNSAVEY-GRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQV 225
Query: 288 IP 289
P
Sbjct: 226 NP 227
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} Length = 249 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 1e-20
Identities = 54/239 (22%), Positives = 91/239 (38%), Gaps = 60/239 (25%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T ++TG++SGIG IAR L + G+ V+++ N + L L N
Sbjct: 16 TSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNA---------LKDNYTIEV 66
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG---------YEEHMQ 177
+L + + L +L+ NAGI + D +++ +
Sbjct: 67 CNLANKEECSNLISKT----SNLDILVCNAGI---------TSDTLAIRMKDQDFDKVID 113
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG--- 234
+N A +L+ +I+ RIIN++S+ VG + G
Sbjct: 114 INLKANFILNREAIKKMIQKRYGRIINISSI---VG------------------IAGNPG 152
Query: 235 ---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
Y SK I + L + A GI V V+PG + +++ L K +A IP
Sbjct: 153 QANYCASKAGLIGMTKSLSYEV-ATRGITVNAVAPGFIKSDMTDKLNEKQREAIVQKIP 210
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} Length = 247 | Back alignment and structure |
|---|
Score = 87.5 bits (218), Expect = 1e-20
Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 52/239 (21%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T IVTGS+ G+G+ IA +L GA++V+ + + + + +
Sbjct: 7 TAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINV-----VVAK 61
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG---------YEEHMQ 177
D+ + + V + G + +L+NNAGI ++D +++ +
Sbjct: 62 GDVKNPEDVENMVKTAMDAFGRIDILVNNAGI---------TRDTLMLKMSEKDWDDVLN 112
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG--- 234
N + L + + +++ +IIN+ S+ G ++G
Sbjct: 113 TNLKSAYLCTKAVSKIMLKQKSGKIINITSI---AG------------------IIGNAG 151
Query: 235 ---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
Y+ SK I F+ + K A GI V+PGI+ T++ LP K+ + + IP
Sbjct: 152 QANYAASKAGLIGFTKSIAKEF-AAKGIYCNAVAPGIIKTDMTDVLPDKVKEMYLNNIP 209
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G Length = 244 | Back alignment and structure |
|---|
Score = 87.2 bits (217), Expect = 2e-20
Identities = 54/239 (22%), Positives = 92/239 (38%), Gaps = 52/239 (21%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG++ GIG+ IA L ++G V++ A E + K E + G+
Sbjct: 3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQA-----ITFG 57
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG---------YEEHMQ 177
D+ V + G + V++NNAGI ++D ++E +
Sbjct: 58 GDVSKEADVEAMMKTAIDAWGTIDVVVNNAGI---------TRDTLLIRMKKSQWDEVID 108
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG--- 234
+N L + +++ RIIN+ SV VG L+G
Sbjct: 109 LNLTGVFLCTQAATKIMMKKRKGRIINIASV---VG------------------LIGNIG 147
Query: 235 ---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
Y+ +K I FS + A INV V PG +++++ L + + IP
Sbjct: 148 QANYAAAKAGVIGFSKTAAREG-ASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIP 205
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} Length = 246 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 3e-20
Identities = 53/239 (22%), Positives = 91/239 (38%), Gaps = 52/239 (21%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG++ GIGR IA LA+ GA+VV+ + + ++ A+
Sbjct: 6 VALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDA-----IAVR 60
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG---------YEEHMQ 177
D+ + + V + G + +L+NNAG+ +KD ++ +
Sbjct: 61 ADVANAEDVTNMVKQTVDVFGQVDILVNNAGV---------TKDNLLMRMKEEEWDTVIN 111
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG--- 234
N L + + ++R RI+N+ SV VG + G
Sbjct: 112 TNLKGVFLCTKAVSRFMMRQRHGRIVNIASV---VG------------------VTGNPG 150
Query: 235 ---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
Y +K I + K L A I V ++PG ++T++ L I LIP
Sbjct: 151 QANYVAAKAGVIGLTKTSAKEL-ASRNITVNAIAPGFIATDMTDVLDENIKAEMLKLIP 208
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} Length = 264 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 4e-20
Identities = 43/234 (18%), Positives = 85/234 (36%), Gaps = 38/234 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++T T G+G+++ +L G V + + A E +++ ++ + ++
Sbjct: 9 HALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQ-----FVQ 63
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAG--IFSIGEPQKFSKDGYEEHMQVNHLAPA 184
D+ + + + E G + LINNAG +F + + +D + E +Q N A
Sbjct: 64 ADVTKKEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVF 123
Query: 185 LLSILLFPSLIRGSPSRIINV--NSVMHYVGFVDTEDMNVVSGRRKYTSLMG------YS 236
L L+ P + + + RIIN G ++
Sbjct: 124 HLLKLVVPVMRKQNFGRIINYGFQGA---DS------------------APGWIYRSAFA 162
Query: 237 GSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
+K+ + + + AE GI V PG + + + Q H P
Sbjct: 163 AAKVGLVSLTKTVAYEE-AEYGITANMVCPGDIIGEMKEATIQEARQLKEHNTP 215
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... Length = 327 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 5e-20
Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 28/211 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAES---GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
++TG +SGIG +A +LA V +R+LK L W+ + P ++E
Sbjct: 4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRL---WEAARALACPPGSLE 60
Query: 124 AMELDLLSLDSVVR-FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA 182
++LD+ SV GR + VL+ NAG+ +G + +D + VN +
Sbjct: 61 TLQLDVRDSKSVAAARERVTEGR---VDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVG 117
Query: 183 PALLSILLFPSL-IRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
+ P + RGS R++ SV +G + + Y SK A
Sbjct: 118 TVRMLQAFLPDMKRRGS-GRVLVTGSVGGLMGL-------------PFNDV--YCASKFA 161
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTN 272
L L G+++ + G V T
Sbjct: 162 LEGLCESLAVLL-LPFGVHLSLIECGPVHTA 191
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} PDB: 3sj7_A* Length = 246 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 5e-20
Identities = 55/239 (23%), Positives = 93/239 (38%), Gaps = 52/239 (21%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+ +VTG++ GIGR IA QLAE G +V + K E + + + A++
Sbjct: 6 SALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDS-----FAIQ 60
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG---------YEEHMQ 177
++ D V + + G L VL+NNAGI ++D +++ +
Sbjct: 61 ANVADADEVKAMIKEVVSQFGSLDVLVNNAGI---------TRDNLLMRMKEQEWDDVID 111
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG--- 234
N P ++R IIN++SV VG +G
Sbjct: 112 TNLKGVFNCIQKATPQMLRQRSGAIINLSSV---VG------------------AVGNPG 150
Query: 235 ---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
Y +K I + + L A GI V V+PG + +++ L ++ + IP
Sbjct: 151 QANYVATKAGVIGLTKSAAREL-ASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIP 208
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* Length = 269 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 6e-20
Identities = 59/228 (25%), Positives = 92/228 (40%), Gaps = 51/228 (22%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG++ GIGR IA +LA +GA V + + A + + G+ A++
Sbjct: 30 IALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEA-----FAVK 84
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG---------YEEHMQ 177
D+ V A R G L VL+NNAGI ++D ++ +
Sbjct: 85 ADVSQESEVEALFAAVIERWGRLDVLVNNAGI---------TRDTLLLRMKRDDWQSVLD 135
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG--- 234
+N L S +++ RIIN+ SV VG MG
Sbjct: 136 LNLGGVFLCSRAAAKIMLKQRSGRIINIASV---VG------------------EMGNPG 174
Query: 235 ---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
YS +K I + + K L A GI V V+PG ++T++ +L
Sbjct: 175 QANYSAAKAGVIGLTKTVAKEL-ASRGITVNAVAPGFIATDMTSELAA 221
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 7e-20
Identities = 43/252 (17%), Positives = 88/252 (34%), Gaps = 45/252 (17%)
Query: 50 LASHLQNPLPLPPVNDL---TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELI 106
L + Q P + + + IV+G G+G R+L G VV+A + L
Sbjct: 12 LEAQTQGPGSMVTIKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALA 71
Query: 107 QKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIG---- 162
+ L E + ++ S DSV+ EA N + ++ + G
Sbjct: 72 DE---------LGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQ 122
Query: 163 -EPQKFSKDGYEEHMQVN---------HLAPALLSILLFPSLIRGSPSRIINVNSVMHYV 212
+ G+ + + + +A ++ + + RG+ ++ S+ Y
Sbjct: 123 RDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGA---LVLTASIAGYE 179
Query: 213 GFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272
G + Y+ +K I + + L + +GI V ++PG + T
Sbjct: 180 GQI---------------GQTAYAAAKAGVIGLTIAAARDL-SSAGIRVNTIAPGTMKTP 223
Query: 273 VARDLPKIVQAA 284
+ + + A
Sbjct: 224 IMESVGEEALAK 235
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} Length = 294 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 1e-19
Identities = 53/206 (25%), Positives = 84/206 (40%), Gaps = 27/206 (13%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMA--VRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG SGIGR A A GA V + + A + ++ EE K + +
Sbjct: 53 LVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQ-VKALIEECGRKAV-----LLP 106
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI-FSIGEPQKFSKDGYEEHMQVNHLAPAL 185
DL LG L +L AG +I E + + + +++ VN A
Sbjct: 107 GDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFW 166
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
++ P L +G + II +S+ Y L+ Y+ +K A + +
Sbjct: 167 ITQEAIPLLPKG--ASIITTSSIQAYQPSPH---------------LLDYAATKAAILNY 209
Query: 246 SSILQKRLPAESGINVVCVSPGIVST 271
S L K++ AE GI V V+PG + T
Sbjct: 210 SRGLAKQV-AEKGIRVNIVAPGPIWT 234
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} Length = 245 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 2e-19
Identities = 55/239 (23%), Positives = 93/239 (38%), Gaps = 51/239 (21%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG++ GIGR IA +LAE G + + + E + + + +
Sbjct: 3 KALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPL----VAVLG 58
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG---------YEEHMQ 177
+LL ++ LG L L+NNAGI ++D +E ++
Sbjct: 59 ANLLEAEAATALVHQAAEVLGGLDTLVNNAGI---------TRDTLLVRMKDEDWEAVLE 109
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG--- 234
N A + +++ RI+N+ SV VG ++G
Sbjct: 110 ANLSAVFRTTREAVKLMMKARFGRIVNITSV---VG------------------ILGNPG 148
Query: 235 ---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
Y SK I F+ + K A+ GI V V+PG + T + LP ++ +A IP
Sbjct: 149 QANYVASKAGLIGFTRAVAKEY-AQRGITVNAVAPGFIETEMTERLPQEVKEAYLKQIP 206
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A Length = 264 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 2e-19
Identities = 46/224 (20%), Positives = 79/224 (35%), Gaps = 56/224 (25%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG++ GIGR IA + + G+ V+ + + + +E
Sbjct: 10 VVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPGEAK-----------------YDHIE 52
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN------- 179
D+ + D V + G + VL+NNAGI S G+ + S + + VN
Sbjct: 53 CDVTNPDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYA 112
Query: 180 --HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
P ++ PS I+N++SV + + Y
Sbjct: 113 SKFAIPYMIR--------SRDPS-IVNISSVQASIITKN---------------ASAYVT 148
Query: 238 SKLAQIKFSSILQKRLPAE--SGINVVCVSPGIVSTNVARDLPK 279
SK A I + K + + + V P + T + R +
Sbjct: 149 SKHAVIGLT----KSIALDYAPLLRCNAVCPATIDTPLVRKAAE 188
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} Length = 255 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 4e-19
Identities = 39/210 (18%), Positives = 68/210 (32%), Gaps = 29/210 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+TGS SGIG + LA +G V+ R + + L+
Sbjct: 3 VIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEADLSTPGGRETAVAAVLDRCGGV 62
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP--QKFSKDGYEEHMQVNHLAPA 184
LD L + V + A L V +N G+ ++ + + S+ + V +A
Sbjct: 63 LDGLVCCAGVGVTAAN----SGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAAT 118
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
P + + G + + Y+GSK A
Sbjct: 119 QPGAAELPMVEAMLAGDEARAIELAEQQGQ----------------THLAYAGSKYAVTC 162
Query: 245 FSSILQKRLPAE---SGINVVCVSPGIVST 271
+ +R + G+ + V+PG V T
Sbjct: 163 LA----RRNVVDWAGRGVRLNVVAPGAVET 188
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A Length = 247 | Back alignment and structure |
|---|
Score = 82.6 bits (205), Expect = 8e-19
Identities = 59/245 (24%), Positives = 93/245 (37%), Gaps = 64/245 (26%)
Query: 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPL 120
PP + +VTG GIG IA++LA G V + R A L
Sbjct: 11 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF-------------- 56
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG--------- 171
+E+D+ D+V R A GP+ VL++NAG+ S D
Sbjct: 57 ---GVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGL---------SADAFLMRMTEEK 104
Query: 172 YEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTS 231
+E+ + N ++ S+ R R+I + SV G
Sbjct: 105 FEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSV---SG------------------ 143
Query: 232 LMG------YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAA 284
L G Y+ SK I + + + L +++ + V+PG + T++ R L +I Q A
Sbjct: 144 LWGIGNQANYAASKAGVIGMARSIAREL-SKANVTANVVAPGYIDTDMTRALDERIQQGA 202
Query: 285 YHLIP 289
IP
Sbjct: 203 LQFIP 207
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* Length = 278 | Back alignment and structure |
|---|
Score = 83.0 bits (206), Expect = 1e-18
Identities = 43/222 (19%), Positives = 75/222 (33%), Gaps = 42/222 (18%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
I+TG GIG A+ GA VV+A ++ I +
Sbjct: 18 VAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVC----NNIGSPD---VISFVH 70
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP--QKFSKDGYEEHMQVN----- 179
D+ + V + + G L ++ N G+ S + + ++ M +N
Sbjct: 71 CDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAF 130
Query: 180 ----HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGY 235
H A ++ S I+ S+ + Y
Sbjct: 131 LVAKHAARVMIP--------AKKGS-IVFTASISSFTAGE--------------GVSHVY 167
Query: 236 SGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
+ +K A + ++ L L E GI V CVSP IV++ + D+
Sbjct: 168 TATKHAVLGLTTSLCTEL-GEYGIRVNCVSPYIVASPLLTDV 208
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} Length = 253 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 1e-18
Identities = 49/239 (20%), Positives = 88/239 (36%), Gaps = 64/239 (26%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+ +VTG GIG IAR A++G V + R+ + + A++
Sbjct: 23 SVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEGFL-----------------AVK 65
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDG---------YEEHMQ 177
D+ + V + + GP+ VLI NAG+ +KD + ++
Sbjct: 66 CDITDTEQVEQAYKEIEETHGPVEVLIANAGV---------TKDQLLMRMSEEDFTSVVE 116
Query: 178 VNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG--- 234
N + +++R R++ ++SV VG L+G
Sbjct: 117 TNLTGTFRVVKRANRAMLRAKKGRVVLISSV---VG------------------LLGSAG 155
Query: 235 ---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIP 289
Y+ SK + F+ L + L I V+PG V T++ + L + +P
Sbjct: 156 QANYAASKAGLVGFARSLAREL-GSRNITFNVVAPGFVDTDMTKVLTDEQRANIVSQVP 213
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} Length = 257 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 2e-18
Identities = 45/237 (18%), Positives = 84/237 (35%), Gaps = 47/237 (19%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
+ D +VTG SG+G ++L ++GA VV+ + +
Sbjct: 7 IRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVVADLGD------------RA 54
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFS----IGEPQKFSKDGYEEHMQV 178
D+ +V + +G L +++N AG + + FS + + + +
Sbjct: 55 RFAAADVTDEAAVASALDLAE-TMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDI 113
Query: 179 N--------HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYT 230
N LA ++ IIN SV + G
Sbjct: 114 NLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDG----------------- 156
Query: 231 SLMG---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAA 284
+G YS SK + + + + L A I V+ ++PG+ T + LP+ +A+
Sbjct: 157 -QIGQAAYSASKGGVVGMTLPIARDL-ASHRIRVMTIAPGLFDTPLLASLPEEARAS 211
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 Length = 242 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 2e-17
Identities = 50/237 (21%), Positives = 87/237 (36%), Gaps = 59/237 (24%)
Query: 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124
+ + +VTG SG+GR A L G VV+ + + +
Sbjct: 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLI------------------Y 43
Query: 125 MELDLLSLDSVVR-FSEAWNGRLGPLHVLINNAGIFS----IGEPQKFSKDGYEEHMQVN 179
+E D+ + V R + A PL +++ AG+ +G+ + + ++VN
Sbjct: 44 VEGDVTREEDVRRAVARA--QEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVN 101
Query: 180 ---------HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYT 230
A A+ RG I+N SV + G
Sbjct: 102 LLGTFNVLRLAAWAMRENPPDAEGQRG---VIVNTASVAAFEG----------------- 141
Query: 231 SLMG---YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAA 284
+G Y+ SK + + + L A GI VV V+PG+ T + + LP+ +A+
Sbjct: 142 -QIGQAAYAASKGGVVALTLPAAREL-AGWGIRVVTVAPGLFDTPLLQGLPEKAKAS 196
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} PDB: 3uwr_A* Length = 286 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 6e-17
Identities = 45/223 (20%), Positives = 79/223 (35%), Gaps = 44/223 (19%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPL-------- 120
VTG+ G GR A +LA+ GA ++ ++ + + L
Sbjct: 15 FVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH 74
Query: 121 --NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQ 177
I E+D+ D++ ++ +LG L +++ NAGI + G+ K S++ + E +
Sbjct: 75 NRRIVTAEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMID 134
Query: 178 VN---------HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRK 228
+N P +++ G II +S V G +
Sbjct: 135 INLAGVWKTVKAGVPHMIA--------GGRGGSIILTSS---------------VGGLKA 171
Query: 229 YTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
Y Y +K + L + I V V P V T
Sbjct: 172 YPHTGHYVAAKHGVVGLMRAFGVEL-GQHMIRVNSVHPTHVKT 213
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} Length = 287 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 7e-17
Identities = 46/214 (21%), Positives = 72/214 (33%), Gaps = 25/214 (11%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPL------NI 122
+VTG G GR A +LAE GA +++ +
Sbjct: 14 LVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKA 73
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN--- 179
E+D+ +V R G L V++ NAGI +G + + V+
Sbjct: 74 YTAEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGA--HLPVQAFADAFDVDFVG 131
Query: 180 --HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSG 237
+ A L P L G + II SV + +G + GYS
Sbjct: 132 VINTVHAAL-----PYLTSG--ASIITTGSVAGLIAAAQPPG----AGGPQGPGGAGYSY 180
Query: 238 SKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
+K ++ L +L A I + P V+T
Sbjct: 181 AKQLVDSYTLQLAAQL-APQSIRANVIHPTNVNT 213
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* Length = 291 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 1e-16
Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 26/205 (12%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMEL 127
++TG SGIGR ++ A+ GA++ +A + ANE +++ E+ K + +
Sbjct: 51 LITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANET-KQYVEKEGVKCV-----LLPG 104
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGI-FSIGEPQKFSKDGYEEHMQVNHLAPALL 186
DL + +LG L++L+NN + + + + E+ ++N + +
Sbjct: 105 DLSDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHV 164
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ L +G IIN S++ Y G L+ YS +K A + F+
Sbjct: 165 TKAALSHLKQG--DVIINTASIVAYEGNET---------------LIDYSATKGAIVAFT 207
Query: 247 SILQKRLPAESGINVVCVSPGIVST 271
L + L + GI V V+PG + T
Sbjct: 208 RSLSQSL-VQKGIRVNGVAPGPIWT 231
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} Length = 277 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-16
Identities = 41/219 (18%), Positives = 76/219 (34%), Gaps = 40/219 (18%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE----- 123
+TG+ G GR A ++A GA ++ K + + +E
Sbjct: 15 FITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRR 74
Query: 124 --AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN-- 179
A +D D + + + LG L +++ NAG+ + + + + + M +N
Sbjct: 75 IVAAVVDTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVT 134
Query: 180 -------HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSL 232
AP ++ G II ++S +G + +
Sbjct: 135 GTWNTVMAGAPRIIE--------GGRGGSIILISS---------------AAGMKMQPFM 171
Query: 233 MGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
+ Y+ SK A + L + I V V PG V+T
Sbjct: 172 IHYTASKHAVTGLARAFAAEL-GKHSIRVNSVHPGPVNT 209
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} Length = 299 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 1e-15
Identities = 41/230 (17%), Positives = 78/230 (33%), Gaps = 44/230 (19%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMA--------VRNLKAANELIQKWQEEWSGKGL 118
+TG+ G GR A LA GA ++ V+ + + + + + G
Sbjct: 30 VAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR 89
Query: 119 PLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQ 177
I A ++D+ D++ + +LG L +++ NA + S G + + + +
Sbjct: 90 --RIIASQVDVRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMID 147
Query: 178 VN---------HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRK 228
VN P +++ I+ +S + G R
Sbjct: 148 VNLNGAWITARVAIPHIMA--------GKRGGSIVFTSS---------------IGGLRG 184
Query: 229 YTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
++ Y SK + L I V V P V+T + + P
Sbjct: 185 AENIGNYIASKHGLHGLMRTMALEL-GPRNIRVNIVCPSSVATPMLLNEP 233
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} Length = 278 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-15
Identities = 46/220 (20%), Positives = 77/220 (35%), Gaps = 39/220 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPL------ 120
+TG+ G GR A +LA GA ++ + A+ E + L
Sbjct: 15 VAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS 74
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN- 179
I A + D+ +S+ +A LG L +++ NAGI P DG+ + + VN
Sbjct: 75 RIVARQADVRDRESLSAALQAGLDELGRLDIVVANAGI----APMSAGDDGWHDVIDVNL 130
Query: 180 --------HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTS 231
P L+ +G+ I+ ++S G +
Sbjct: 131 TGVYHTIKVAIPTLVK--------QGTGGSIVLISSS---AGLAGVGSADP--------G 171
Query: 232 LMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
+GY +K + + L A I V + P V T
Sbjct: 172 SVGYVAAKHGVVGLMRVYANLL-AGQMIRVNSIHPSGVET 210
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} Length = 280 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 2e-15
Identities = 43/221 (19%), Positives = 74/221 (33%), Gaps = 40/221 (18%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE--- 123
+TG+ G GR A +LA GA ++ + + +E
Sbjct: 17 VAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG 76
Query: 124 ----AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN 179
LD+ ++ + G L V++ NAG+ S G + + + ++ + VN
Sbjct: 77 RKALTRVLDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVN 136
Query: 180 ---------HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYT 230
PA++ G+ I+ V+S +G +
Sbjct: 137 LTGTWRTLRATVPAMIE--------AGNGGSIVVVSS---------------SAGLKATP 173
Query: 231 SLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
YS SK ++ L L E GI V + P V T
Sbjct: 174 GNGHYSASKHGLTALTNTLAIEL-GEYGIRVNSIHPYSVET 213
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} Length = 281 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 6e-15
Identities = 47/218 (21%), Positives = 80/218 (36%), Gaps = 36/218 (16%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVV--------MAVRNLKAANELIQKWQEEWSGKGL 118
T ++TG G+GR A LAE+GA + V A + + + G
Sbjct: 12 TALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGR 71
Query: 119 PLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQV 178
+ ++D+ ++ F LG + + I NAGI +I + ++E +
Sbjct: 72 --RCISAKVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGT 129
Query: 179 N-----HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLM 233
N + A+ P +I+ + RI+ V+S + G +
Sbjct: 130 NLTGTFNTIAAVA-----PGMIKRNYGRIVTVSS---------------MLGHSANFAQA 169
Query: 234 GYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
Y SK I + L GI V V+PG + T
Sbjct: 170 SYVSSKWGVIGLTKCAAHDL-VGYGITVNAVAPGNIET 206
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} Length = 317 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 2e-14
Identities = 51/223 (22%), Positives = 82/223 (36%), Gaps = 45/223 (20%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVM------------AVRNLKAANELIQKWQEEWS 114
+TG+ G GR A +LA+ GA +V A + + E ++ EE
Sbjct: 48 VAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLV-EEQG 106
Query: 115 GKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEE 174
+ I A + D+ L S+ + G + +L++N GI + GE + + +
Sbjct: 107 RR-----IIARQADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSD 161
Query: 175 HMQVN-----HLAPALLSILLFPSLIRGSPS-RIINVNSVMHYVGFVDTEDMNVVSGRRK 228
+Q N H A+L PS+I +I V+S G R
Sbjct: 162 ILQTNLIGAWHACRAVL-----PSMIERGQGGSVIFVSS---------------TVGLRG 201
Query: 229 YTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
Y+ SK L + I V V+PG V+T
Sbjct: 202 APGQSHYAASKHGVQGLMLSLANEV-GRHNIRVNSVNPGAVNT 243
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Length = 287 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 9e-11
Identities = 20/127 (15%), Positives = 34/127 (26%), Gaps = 16/127 (12%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
V +V T +G A LA GA VV+ R L A + +
Sbjct: 117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTA--- 173
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINN--AGIFSIGEPQKFSKDGYEEHMQVNH 180
+ S + H + G+ + + ++ E N
Sbjct: 174 ----AETADDASRAEA-------VKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNA 222
Query: 181 LAPALLS 187
P +
Sbjct: 223 QPPLGIG 229
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* Length = 319 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 7e-10
Identities = 41/223 (18%), Positives = 82/223 (36%), Gaps = 54/223 (24%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVV---------MAVRNLKAANELIQKWQEEWSGKG 117
+VTG+ G+GR A AE GA VV + AA++++++
Sbjct: 11 VVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEE--------- 61
Query: 118 LPLNIEAM----ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYE 173
I + S+++ + + G + V++NNAGI + S + ++
Sbjct: 62 ----IRRRGGKAVANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWD 117
Query: 174 EHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLM 233
+V+ ++ + + + + RII S SG +
Sbjct: 118 IIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTAS---------------ASG------IY 156
Query: 234 G------YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVS 270
G YS +KL + ++ L ++ I+ ++P S
Sbjct: 157 GNFGQANYSAAKLGLLGLANTLVIEG-RKNNIHCNTIAPNAGS 198
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} Length = 322 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 9e-10
Identities = 54/252 (21%), Positives = 85/252 (33%), Gaps = 68/252 (26%)
Query: 50 LASHLQNPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVV----------MAVRNL 99
L + Q P + V+ IVTG+ GIGR A A GA VV
Sbjct: 12 LEAQTQGPGSMGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGG 71
Query: 100 KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN------GRLGPLHVLI 153
AA ++ +E + G EA+ +V + +A G L VL+
Sbjct: 72 SAAQSVV----DEITAAGG----EAV----ADGSNVADWDQAAGLIQTAVETFGGLDVLV 119
Query: 154 NNAGIFSIGEPQKFSKDGYEEHMQVN---------HLAPALLSILLFPSLIRGSPSRIIN 204
NNAGI S++ ++ + V+ H A + + G RIIN
Sbjct: 120 NNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDG---RIIN 176
Query: 205 VNSVMHYVGFVDTEDMNVVSGRRKYTSLMG------YSGSKLAQIKFSSILQKRLPAESG 258
+S +G L G YS +K + + + G
Sbjct: 177 TSS---------------GAG------LQGSVGQGNYSAAKAGIATLTLVGAAEM-GRYG 214
Query: 259 INVVCVSPGIVS 270
+ V ++P +
Sbjct: 215 VTVNAIAPSART 226
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 1e-09
Identities = 48/227 (21%), Positives = 87/227 (38%), Gaps = 62/227 (27%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVV---------MAVRNLKAANELIQKWQEEWSGKG 117
I+TG+ G+G+ + + A+ GA VV N KAA+ ++ +
Sbjct: 10 VVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDE--------- 60
Query: 118 LPLNIEAM-------ELDLLSLDSVVRFS-EAWNGRLGPLHVLINNAGIFSIGEPQKFSK 169
I ++L D +V + + + G +HV+INNAGI +K ++
Sbjct: 61 ----IVKNGGVAVADYNNVLDGDKIVETAVKNF----GTVHVIINNAGILRDASMKKMTE 112
Query: 170 DGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKY 229
Y+ + V+ ++ +P + RI+N +S +G
Sbjct: 113 KDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSS---------------PAG---- 153
Query: 230 TSLMG------YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVS 270
L G Y+ +K A + F+ L K A+ I ++P S
Sbjct: 154 --LYGNFGQANYASAKSALLGFAETLAKEG-AKYNIKANAIAPLARS 197
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} Length = 604 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-08
Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 46/226 (20%)
Query: 55 QNPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWS 114
+ P + D ++TG+ +G+G+E A+ A+ GA VV V + K A + + +E
Sbjct: 312 ASGAPTVSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVV--VNDFKDATKTV----DEIK 365
Query: 115 GKGLPLNIEAMELDLLSLDSVVRFSEAW----NGRLGPLHVLINNAGIFSIGEPQKFSKD 170
G EA V + SEA + G + +L+NNAGI K SK
Sbjct: 366 AAG----GEAW----PDQHDVAKDSEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQ 417
Query: 171 GYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYT 230
++ QV+ + LS L +P + RIIN+ S SG
Sbjct: 418 EWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITS---------------TSG----- 457
Query: 231 SLMG------YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVS 270
+ G YS SK + S + A++ I V V+P +
Sbjct: 458 -IYGNFGQANYSSSKAGILGLSKTMAIEG-AKNNIKVNIVAPHAET 501
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} Length = 613 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 1e-07
Identities = 46/213 (21%), Positives = 80/213 (37%), Gaps = 40/213 (18%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVM-----AVRNLKAANELIQKWQEEWSGKGLPLN 121
+VTG+ +G+GRE A AE GA VV+ A+ +E G
Sbjct: 21 VAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAG---- 76
Query: 122 IEAMELDLLSLDSVVRFS-------EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEE 174
EA+ +SV+ + +A+ GR + +L+NNAGI K S+ +
Sbjct: 77 GEAV----ADYNSVIDGAKVIETAIKAF-GR---VDILVNNAGILRDRSLVKTSEQDWNL 128
Query: 175 HMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG 234
V+ + FP + + + RII +S G G+
Sbjct: 129 VNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNF---------GQV------N 173
Query: 235 YSGSKLAQIKFSSILQKRLPAESGINVVCVSPG 267
Y+ +K+ I ++ + A + + + P
Sbjct: 174 YTAAKMGLIGLANTVAIEG-ARNNVLCNVIVPT 205
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 3e-07
Identities = 47/289 (16%), Positives = 89/289 (30%), Gaps = 75/289 (25%)
Query: 10 TSSPSAAELISKSKRKEALGWMEWLRGWLYVIYEMLFQRILASHLQNPLPLPPVN----- 64
T++P +I++S R W W +V + L I+ S L L P
Sbjct: 324 TTNPRRLSIIAESIRDGLATW----DNWKHVNCDKL-TTIIESSLNV---LEPAEYRKMF 375
Query: 65 -DLTCIVTGSTSGIGRE---IARQL-----AESGAHVVMAVRNLKAANELIQKWQEEWSG 115
L + I L + VM V N L++K +E
Sbjct: 376 DRL---------SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE--- 423
Query: 116 KGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLH-VLINNAGIFSIGEPQKFSK---DG 171
+ + + L+ V+ LH ++++ I + D
Sbjct: 424 -------STISIPSIYLELKVKLEN-----EYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 172 YEEHMQVNHLAPALLS--ILLFPSL----------IR------GSPSRIIN-VNSVMHYV 212
Y +HL + LF + IR + I+N + + Y
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 213 GFVDTEDMNVVSGRRKYTSLMGYS---GSKLAQIKFSSILQKRLPAESG 258
++ ++ R +++ + L K++ +L+ L AE
Sbjct: 532 PYI-CDNDPKYE--RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 6e-06
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 13/69 (18%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+ G+ I R + QLA+ R ++ P N + + D
Sbjct: 28 ILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP------------YPTNSQIIMGD 75
Query: 129 LLSLDSVVR 137
+L+ ++ +
Sbjct: 76 VLNHAALKQ 84
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-05
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 12/68 (17%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL 129
+ G+T G Q ++G V + VR+ P + D+
Sbjct: 8 IFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE------------GPRPAHVVVGDV 55
Query: 130 LSLDSVVR 137
L V +
Sbjct: 56 LQAADVDK 63
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 5e-05
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105
V G+ + R + +L G V VRN + EL
Sbjct: 26 VVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPEL 61
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* Length = 496 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVR 97
P + +VTG T GIG +AR+LAE GA H+V+ R
Sbjct: 231 GSGKRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSR 272
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 1e-04
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105
+ GST +G+ + + L+ + + R ++ +
Sbjct: 5 IVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY 40
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 13/69 (18%)
Query: 70 VTGSTSGIGREIARQLAESGAH-VVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+TG+T +G I Q + + VRN++ + + +LD
Sbjct: 5 LTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD------------WRGKVSVRQLD 52
Query: 129 LLSLDSVVR 137
+ +S+V
Sbjct: 53 YFNQESMVE 61
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 4e-04
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++ G++ +G + + G V VR+ + K +++ +
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI-------------KIENEHLKVKK 52
Query: 127 LDLLSLDSVVR 137
D+ SLD V
Sbjct: 53 ADVSSLDEVCE 63
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* Length = 486 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVR 97
P T +VTG T G+G +IAR LA GA H+++ R
Sbjct: 220 DDEWKP--TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSR 259
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 9e-04
Identities = 19/110 (17%), Positives = 34/110 (30%), Gaps = 25/110 (22%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL 129
V G+T +G AR + +G +V+ R L L E ++
Sbjct: 18 VLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAY------------LEPECRVAEM 65
Query: 130 LSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN 179
L + A G +I +AG + ++E +
Sbjct: 66 LDHAGL---ERALRGL----DGVIFSAGYYP------SRPRRWQEEVASA 102
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 298 | |||
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 100.0 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 100.0 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 100.0 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 100.0 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 100.0 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 100.0 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 100.0 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 100.0 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 100.0 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 100.0 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 100.0 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 100.0 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 100.0 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 100.0 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 100.0 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 100.0 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 100.0 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 100.0 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 100.0 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 100.0 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 100.0 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 100.0 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 100.0 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 100.0 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 100.0 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 100.0 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 100.0 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 100.0 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 100.0 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 100.0 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 100.0 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 100.0 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 100.0 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 100.0 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 100.0 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 100.0 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 100.0 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 100.0 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 100.0 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 100.0 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 100.0 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 100.0 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 100.0 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 100.0 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 100.0 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 100.0 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 100.0 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 100.0 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 100.0 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 100.0 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 100.0 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 100.0 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 100.0 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 100.0 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 100.0 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 100.0 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 100.0 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 100.0 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 100.0 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 100.0 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 100.0 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 100.0 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 100.0 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 100.0 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 100.0 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 100.0 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 100.0 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 100.0 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 100.0 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 100.0 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 100.0 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 100.0 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 100.0 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 100.0 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 100.0 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 100.0 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 100.0 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 100.0 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 100.0 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 100.0 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 100.0 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 100.0 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 100.0 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 100.0 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 100.0 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 100.0 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 100.0 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 100.0 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 100.0 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 100.0 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 100.0 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 100.0 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 100.0 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 100.0 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 100.0 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 100.0 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 100.0 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 100.0 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 100.0 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 100.0 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 100.0 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 100.0 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 100.0 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 100.0 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 100.0 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 100.0 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 100.0 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 100.0 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 100.0 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 100.0 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 100.0 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 100.0 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 100.0 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 100.0 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 100.0 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 100.0 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 100.0 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 100.0 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 100.0 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 100.0 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 100.0 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 100.0 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 100.0 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 100.0 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 100.0 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 100.0 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 100.0 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 100.0 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 100.0 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 100.0 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 100.0 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 100.0 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 100.0 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 100.0 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 100.0 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 100.0 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 100.0 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 100.0 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 100.0 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 100.0 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 100.0 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 100.0 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 100.0 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 100.0 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 100.0 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 100.0 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 100.0 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 100.0 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 100.0 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 100.0 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 100.0 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 100.0 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 100.0 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 100.0 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 100.0 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 100.0 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 100.0 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 100.0 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 100.0 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 100.0 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 100.0 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 100.0 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 100.0 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 100.0 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 100.0 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 100.0 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 100.0 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 100.0 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 100.0 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 100.0 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 100.0 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 100.0 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 100.0 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 100.0 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 100.0 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 100.0 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 100.0 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 100.0 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 100.0 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 100.0 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 100.0 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 100.0 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 100.0 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 100.0 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 100.0 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 100.0 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 100.0 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 100.0 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 100.0 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 100.0 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 100.0 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 100.0 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 100.0 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 100.0 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.97 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.97 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.97 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.97 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.96 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.95 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.95 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.95 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.94 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.91 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.91 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.9 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 99.9 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.89 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.89 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.89 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.89 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.88 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.88 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.88 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.87 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.87 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.87 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.86 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.86 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.86 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.86 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.86 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.85 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.85 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.85 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.84 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.84 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.84 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.83 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.83 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.83 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.83 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.83 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.83 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.83 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.83 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.82 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.82 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.82 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.82 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.82 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.82 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.82 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.82 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.82 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.81 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.81 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.81 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.81 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.81 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.8 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.8 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.8 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.79 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.79 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.79 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.79 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.79 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.78 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.78 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.77 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.77 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.77 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.77 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.76 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.76 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.74 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.74 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.74 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.73 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.72 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.7 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.7 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.68 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.67 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.66 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.65 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.65 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.65 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.63 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.63 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.59 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.59 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.57 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.57 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.52 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.5 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.49 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.49 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 99.49 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.48 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.47 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.46 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 99.33 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.18 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 99.08 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.06 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 99.01 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.89 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 98.85 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 98.82 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.81 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 98.75 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 98.72 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.7 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 98.68 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 98.67 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.64 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 98.59 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 98.54 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.5 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 98.47 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 98.46 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.45 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.44 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 98.41 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 98.4 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 98.38 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 98.35 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 98.33 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 98.33 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 98.31 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 98.3 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 98.28 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 98.26 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 98.26 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 98.24 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 98.19 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 98.17 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 98.1 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 98.08 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.03 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 98.03 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.0 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 97.96 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.94 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.94 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.93 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.93 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 97.9 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 97.89 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 97.88 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.86 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 97.85 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 97.82 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 97.8 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.79 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.77 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.76 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.74 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.74 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 97.74 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.71 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 97.68 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 97.64 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.63 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 97.63 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.62 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 97.6 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.59 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.57 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 97.56 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 97.56 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 97.54 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.53 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.46 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.46 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 97.41 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 97.38 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 97.38 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 97.35 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 97.35 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 97.34 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.34 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.33 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.28 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 97.23 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 97.22 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 97.2 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 97.17 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 97.14 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 97.14 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 97.13 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 97.13 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 97.12 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 97.11 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.11 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.09 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 97.07 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.04 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 97.02 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 97.02 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 97.01 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 97.0 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.99 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 96.97 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.96 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 96.96 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.95 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 96.95 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.92 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 96.92 | |
| 3iup_A | 379 | Putative NADPH:quinone oxidoreductase; YP_296108.1 | 96.92 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.91 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 96.9 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 96.89 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 96.87 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.87 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 96.87 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 96.86 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.82 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 96.81 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 96.78 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.75 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 96.74 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 96.73 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.73 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 96.72 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 96.7 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 96.7 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 96.69 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 96.69 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.66 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.64 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.62 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 96.61 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.61 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 96.59 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 96.54 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 96.46 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 96.4 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.38 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.34 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.32 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.32 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 96.28 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 96.18 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 96.18 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 96.13 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.12 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 96.11 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.11 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.08 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 96.07 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.05 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 96.03 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.0 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.98 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.96 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 95.92 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 95.88 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.86 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 95.86 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 95.85 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.83 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.82 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 95.81 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 95.8 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.8 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.79 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 95.78 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 95.75 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 95.74 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.71 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 95.7 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 95.66 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.66 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.6 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 95.6 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 95.56 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.51 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 95.49 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 95.45 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 95.43 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 95.41 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 95.27 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 95.24 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 95.17 |
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-52 Score=360.23 Aligned_cols=215 Identities=23% Similarity=0.297 Sum_probs=193.6
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++||++|||||++|||+++|++|+++|++|++++|++++++++.+++++. +.++.++++|++|+++++++++
T Consensus 3 ~sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~------g~~~~~~~~Dvt~~~~v~~~~~ 76 (254)
T 4fn4_A 3 QSLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGM------GKEVLGVKADVSKKKDVEEFVR 76 (254)
T ss_dssp GGGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999998764 2479999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.++||+||+||||||+.. ..++.+++.|+|++++++|+.|+|+++|+++|+|+++++|+|||+||.+++.+.
T Consensus 77 ~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~----- 151 (254)
T 4fn4_A 77 RTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGG----- 151 (254)
T ss_dssp HHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSS-----
T ss_pred HHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCC-----
Confidence 99999999999999999865 467899999999999999999999999999999999999999999999877665
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hH-HHHHHHH-hhhhccc-
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PK-IVQAAYH-LIPYFIF- 293 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~-~~~~~~~-~~p~~~~- 293 (298)
+...+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.... .+ ..+...+ ..|++|+
T Consensus 152 ----------~~~~~Y~asKaal~~ltr~lA~el-a~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~R~g 220 (254)
T 4fn4_A 152 ----------FAGAPYTVAKHGLIGLTRSIAAHY-GDQGIRAVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSLSSRLA 220 (254)
T ss_dssp ----------SSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSSCTTSCSSCCHHHHHHHHHHHTTCCCCB
T ss_pred ----------CCChHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEEeCCCCCcccccccCCcHHHHHHHHhcCCCCCCCc
Confidence 788899999999999999999999 89999999999999999997654 12 2233333 4577888
Q ss_pred CCCC
Q 022369 294 NPQE 297 (298)
Q Consensus 294 ~pe~ 297 (298)
+|||
T Consensus 221 ~ped 224 (254)
T 4fn4_A 221 EPED 224 (254)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8875
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-52 Score=361.16 Aligned_cols=216 Identities=20% Similarity=0.244 Sum_probs=198.8
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+.+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++.+. +.++.++++|++|++++++++
T Consensus 4 ~f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~------g~~~~~~~~Dv~~~~~v~~~~ 77 (255)
T 4g81_D 4 LFDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRK------GYDAHGVAFDVTDELAIEAAF 77 (255)
T ss_dssp TTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT------TCCEEECCCCTTCHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeeCCCHHHHHHHH
Confidence 45899999999999999999999999999999999999999999999998774 247899999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+++|+||+||||||+....++.+++.|+|++++++|+.|+|+++|+++|+|+++ ++|+|||+||.+++.+.
T Consensus 78 ~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~---- 153 (255)
T 4g81_D 78 SKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAAR---- 153 (255)
T ss_dssp HHHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBC----
T ss_pred HHHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCC----
Confidence 9999999999999999999999999999999999999999999999999999999764 67999999999877665
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-C
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~ 294 (298)
+....|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+.. ++..+.+...+|++|+ +
T Consensus 154 -----------~~~~~Y~asKaal~~ltr~lA~el-a~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl~R~g~ 221 (255)
T 4g81_D 154 -----------PTVAPYTAAKGGIKMLTCSMAAEW-AQFNIQTNAIGPGYILTDMNTALIEDKQFDSWVKSSTPSQRWGR 221 (255)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCGGGHHHHTCHHHHHHHHHHSTTCSCBC
T ss_pred -----------CCchhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCCCCchhhcccCCHHHHHHHHhCCCCCCCcC
Confidence 888999999999999999999999 89999999999999999998754 3344556678999999 9
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 222 ped 224 (255)
T 4g81_D 222 PEE 224 (255)
T ss_dssp GGG
T ss_pred HHH
Confidence 987
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-50 Score=352.37 Aligned_cols=209 Identities=23% Similarity=0.284 Sum_probs=186.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++..+++|++|++++++++++
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g---------~~~~~~~~Dv~~~~~v~~~~~~ 96 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG---------GGAVGIQADSANLAELDRLYEK 96 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------TTCEEEECCTTCHHHHHHHHHH
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC---------CCeEEEEecCCCHHHHHHHHHH
Confidence 5899999999999999999999999999999999999999998877762 3678899999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|+||+||||||+....++.+++.|+|++++++|+.|+|+++|+++|+|++ +|+|||+||.++..+.
T Consensus 97 ~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~--~G~IInisS~~~~~~~------- 167 (273)
T 4fgs_A 97 VKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLAR--GSSVVLTGSTAGSTGT------- 167 (273)
T ss_dssp HHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE--EEEEEEECCGGGGSCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhh--CCeEEEEeehhhccCC-------
Confidence 9999999999999999998899999999999999999999999999999999975 5799999999877665
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch--------HHHHHHHHhhhhccc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP--------KIVQAAYHLIPYFIF 293 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~--------~~~~~~~~~~p~~~~ 293 (298)
|...+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|++..+.. +..+.+...+|++|+
T Consensus 168 --------~~~~~Y~asKaav~~ltr~lA~El-a~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~PlgR~ 238 (273)
T 4fgs_A 168 --------PAFSVYAASKAALRSFARNWILDL-KDRGIRINTLSPGPTETTGLVELAGKDPVQQQGLLNALAAQVPMGRV 238 (273)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHT-TTSCEEEEEEEECSBCC---------CHHHHHHHHHHHHHHSTTSSC
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCCCChhHHHhhccCchhhHHHHHHHHhcCCCCCC
Confidence 888899999999999999999999 899999999999999999986642 223445568999999
Q ss_pred -CCCC
Q 022369 294 -NPQE 297 (298)
Q Consensus 294 -~pe~ 297 (298)
+|||
T Consensus 239 g~pee 243 (273)
T 4fgs_A 239 GRAEE 243 (273)
T ss_dssp BCHHH
T ss_pred cCHHH
Confidence 8876
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-50 Score=344.21 Aligned_cols=209 Identities=25% Similarity=0.360 Sum_probs=185.3
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..+++||++|||||++|||+++|+.|+++|++|++++|+.+ ++..+++.+. +.++.++++|++|++++++++
T Consensus 4 ~f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~------g~~~~~~~~Dv~d~~~v~~~~ 75 (247)
T 4hp8_A 4 PFSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKD------GGNASALLIDFADPLAAKDSF 75 (247)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHT------TCCEEEEECCTTSTTTTTTSS
T ss_pred CcCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHh------CCcEEEEEccCCCHHHHHHHH
Confidence 45899999999999999999999999999999999999865 3555555543 247899999999999887765
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~ 218 (298)
+ +|+||+||||||+....++.+++.++|++++++|+.|+|+++|+++|+|++++ .|+|||+||..++.+.
T Consensus 76 ~-----~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~---- 146 (247)
T 4hp8_A 76 T-----DAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGG---- 146 (247)
T ss_dssp T-----TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC----
T ss_pred H-----hCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCC----
Confidence 3 48999999999999889999999999999999999999999999999998764 7999999999877765
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-C
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~ 294 (298)
+....|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+.. ++..+.+...+|++|+ +
T Consensus 147 -----------~~~~~Y~asKaav~~ltr~lA~El-a~~gIrVNaV~PG~i~T~~~~~~~~~~~~~~~~~~~~PlgR~g~ 214 (247)
T 4hp8_A 147 -----------IRVPSYTAAKHGVAGLTKLLANEW-AAKGINVNAIAPGYIETNNTEALRADAARNKAILERIPAGRWGH 214 (247)
T ss_dssp -----------SSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHTTCTTSSCBC
T ss_pred -----------CCChHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEeeCCCCCcchhhcccCHHHHHHHHhCCCCCCCcC
Confidence 788899999999999999999999 89999999999999999998764 3345566779999999 8
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 215 pee 217 (247)
T 4hp8_A 215 SED 217 (247)
T ss_dssp THH
T ss_pred HHH
Confidence 886
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=336.94 Aligned_cols=202 Identities=24% Similarity=0.318 Sum_probs=181.6
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|+||||||++|||+++|++|+++|++|++++|++++++++.++ +.++.++++|++|+++++++++++.+
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~v~~~~~ 71 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKE----------RPNLFYFHGDVADPLTLKKFVEYAME 71 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTT----------CTTEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----------cCCEEEEEecCCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999998877665433 13688999999999999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
++|+||+||||||+....++.+++.|+|++++++|+.|+|+++|+++|+|++++ |+|||+||..++.+.
T Consensus 72 ~~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-G~IInisS~~~~~~~---------- 140 (247)
T 3ged_A 72 KLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK-GRIINIASTRAFQSE---------- 140 (247)
T ss_dssp HHSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGTSCC----------
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CcEEEEeecccccCC----------
Confidence 999999999999999888999999999999999999999999999999998765 999999999877665
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHHhhhhccc-CCCC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~~~-~pe~ 297 (298)
|...+|++||+|+.+|+++|+.|+ ++ |||||+|+||+|+|++.++..+ +....+|++|+ +|||
T Consensus 141 -----~~~~~Y~asKaal~~ltk~lA~el-a~-~IrVN~I~PG~i~t~~~~~~~~---~~~~~~Pl~R~g~ped 204 (247)
T 3ged_A 141 -----PDSEAYASAKGGIVALTHALAMSL-GP-DVLVNCIAPGWINVTEQQEFTQ---EDCAAIPAGKVGTPKD 204 (247)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHH-TT-TSEEEEEEECSBCCCC---CCH---HHHHTSTTSSCBCHHH
T ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHH-CC-CCEEEEEecCcCCCCCcHHHHH---HHHhcCCCCCCcCHHH
Confidence 888899999999999999999999 66 9999999999999999876643 44568999999 8875
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-49 Score=336.66 Aligned_cols=200 Identities=30% Similarity=0.369 Sum_probs=174.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
++||++|||||++|||+++|++|+++|++|++++|+.+++++. .+.++..+++|++|++++++++++
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~------------~~~~~~~~~~Dv~~~~~v~~~~~~- 75 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAP------------RHPRIRREELDITDSQRLQRLFEA- 75 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSC------------CCTTEEEEECCTTCHHHHHHHHHH-
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhh------------hcCCeEEEEecCCCHHHHHHHHHh-
Confidence 5899999999999999999999999999999999998766532 124789999999999999887754
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
+|+||+||||||+.. ++.+++.++|++++++|+.|+|+++|+++|+|+++ +|+|||+||.+++.+.
T Consensus 76 ---~g~iDiLVNNAGi~~--~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~-~G~IVnisS~~~~~~~-------- 141 (242)
T 4b79_A 76 ---LPRLDVLVNNAGISR--DREEYDLATFERVLRLNLSAAMLASQLARPLLAQR-GGSILNIASMYSTFGS-------- 141 (242)
T ss_dssp ---CSCCSEEEECCCCCC--GGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-CEEEEEECCGGGTSCC--------
T ss_pred ---cCCCCEEEECCCCCC--CcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeeccccCCC--------
Confidence 799999999999854 67899999999999999999999999999999765 5999999999877665
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-CCCC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~pe~ 297 (298)
+....|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|||.+.. ++..+.+...+|++|+ +|||
T Consensus 142 -------~~~~~Y~asKaav~~ltr~lA~El-a~~gIrVNaV~PG~i~T~m~~~~~~~~~~~~~~~~~~PlgR~g~pee 212 (242)
T 4b79_A 142 -------ADRPAYSASKGAIVQLTRSLACEY-AAERIRVNAIAPGWIDTPLGAGLKADVEATRRIMQRTPLARWGEAPE 212 (242)
T ss_dssp -------SSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCC-----CCCHHHHHHHHHTCTTCSCBCHHH
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCCCCChhhhcccCCHHHHHHHHhcCCCCCCcCHHH
Confidence 788899999999999999999999 88999999999999999998765 3556677789999999 8875
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-48 Score=337.67 Aligned_cols=212 Identities=24% Similarity=0.259 Sum_probs=183.3
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+.++.+. .+++.+.. .++.++++|++|+++++++++
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~-~~~~~~~~------~~~~~~~~Dv~~~~~v~~~v~ 75 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAF-LDALAQRQ------PRATYLPVELQDDAQCRDAVA 75 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHH-HHHHHHHC------TTCEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHH-HHHHHhcC------CCEEEEEeecCCHHHHHHHHH
Confidence 37899999999999999999999999999999999999887553 34444432 378899999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.++||+||+||||||+.... ..+.+.|+|++.+++|+.|+|+++|+++|+|+++ +|+|||+||.+++.+.
T Consensus 76 ~~~~~~G~iDiLVNnAGi~~~~-~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~-~G~IVnisS~~~~~~~------ 147 (258)
T 4gkb_A 76 QTIATFGRLDGLVNNAGVNDGI-GLDAGRDAFVASLERNLIHYYAMAHYCVPHLKAT-RGAIVNISSKTAVTGQ------ 147 (258)
T ss_dssp HHHHHHSCCCEEEECCCCCCCC-CTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCTHHHHCC------
T ss_pred HHHHHhCCCCEEEECCCCCCCC-CccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEEEeehhhccCC------
Confidence 9999999999999999987544 4578999999999999999999999999999765 4999999999877665
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch-------HHHHHHHHhhhhc-c
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-------KIVQAAYHLIPYF-I 292 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~-------~~~~~~~~~~p~~-~ 292 (298)
+....|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+... +..++....+|++ |
T Consensus 148 ---------~~~~~Y~asKaav~~ltr~lA~el-a~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plg~R 217 (258)
T 4gkb_A 148 ---------GNTSGYCASKGAQLALTREWAVAL-REHGVRVNAVIPAEVMTPLYRNWIATFEDPEAKLAEIAAKVPLGRR 217 (258)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCSCC-----------CHHHHHHTTCTTTTS
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCCCCChhHhhhhhcccChHHHHHHHHhcCCCCCC
Confidence 888899999999999999999999 899999999999999999987642 2234556688985 7
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 218 ~g~pee 223 (258)
T 4gkb_A 218 FTTPDE 223 (258)
T ss_dssp CBCHHH
T ss_pred CcCHHH
Confidence 7 8875
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-47 Score=333.28 Aligned_cols=207 Identities=24% Similarity=0.333 Sum_probs=180.3
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
++.+++||++|||||++|||+++|++|+++|++|++++|+.++. ..+..++++|++++++++++
T Consensus 5 dl~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~----------------~~~~~~~~~Dv~~~~~v~~~ 68 (261)
T 4h15_A 5 EFLNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG----------------LPEELFVEADLTTKEGCAIV 68 (261)
T ss_dssp CCCCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT----------------SCTTTEEECCTTSHHHHHHH
T ss_pred hccCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC----------------CCcEEEEEcCCCCHHHHHHH
Confidence 45689999999999999999999999999999999999985421 01345789999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCC--CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 139 SEAWNGRLGPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
++++.+++|+||+||||||+.. .+++.+++.|+|++.+++|+.|+++++|+++|+|+++++|+|||+||..+..+.
T Consensus 69 ~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~-- 146 (261)
T 4h15_A 69 AEATRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPL-- 146 (261)
T ss_dssp HHHHHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--
T ss_pred HHHHHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCC--
Confidence 9999999999999999999864 357889999999999999999999999999999999999999999999876654
Q ss_pred cccccccccccCCC-CcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH---------------H
Q 022369 217 TEDMNVVSGRRKYT-SLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK---------------I 280 (298)
Q Consensus 217 ~~~~~~~~~~~~~~-~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~---------------~ 280 (298)
| ....|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|++.....+ .
T Consensus 147 -------------~~~~~~Y~asKaal~~lt~~lA~El-a~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~ 212 (261)
T 4h15_A 147 -------------PESTTAYAAAKAALSTYSKAMSKEV-SPKGVRVVRVSPGWIETEASVRLAERLAKQAGTDLEGGKKI 212 (261)
T ss_dssp -------------TTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred -------------CCccHHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEeCCCcCCcchhhhhHHHHHhhccchhhHHHH
Confidence 4 56789999999999999999999 8899999999999999998754321 1
Q ss_pred HHHHHHhhhhccc-CCCC
Q 022369 281 VQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 281 ~~~~~~~~p~~~~-~pe~ 297 (298)
.+.....+|++|+ +|||
T Consensus 213 ~~~~~~~~PlgR~g~pee 230 (261)
T 4h15_A 213 IMDGLGGIPLGRPAKPEE 230 (261)
T ss_dssp HHHHTTCCTTSSCBCHHH
T ss_pred HHHHhcCCCCCCCcCHHH
Confidence 2233346899998 8875
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-46 Score=324.53 Aligned_cols=215 Identities=15% Similarity=0.160 Sum_probs=191.6
Q ss_pred CCCCCCCEEEEeCCCC--chHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTS--GIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 60 ~~~~~~k~vlITGas~--GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
+.+++||++|||||+| |||+++|++|+++|++|++++|+++.++++.+++.+.. +.++.++++|++|++++++
T Consensus 1 M~~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~ 75 (256)
T 4fs3_A 1 MLNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLN-----QPEAHLYQIDVQSDEEVIN 75 (256)
T ss_dssp CCCCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGT-----CSSCEEEECCTTCHHHHHH
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-----CCcEEEEEccCCCHHHHHH
Confidence 3578999999999875 99999999999999999999999999999888776542 2378899999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCCC----CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSI----GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~ 213 (298)
+++++.+++|+||+||||||+... .++.+.+.++|+..+++|+.+++.+++.++++|++ +|+|||+||.++..+
T Consensus 76 ~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~--~G~IVnisS~~~~~~ 153 (256)
T 4fs3_A 76 GFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPE--GGSIVATTYLGGEFA 153 (256)
T ss_dssp HHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTT--CEEEEEEECGGGTSC
T ss_pred HHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCEEEEEeccccccC
Confidence 999999999999999999998643 35678899999999999999999999999997764 689999999987666
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhh
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPY 290 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~ 290 (298)
. +....|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|++.+.. ++..+.+...+|+
T Consensus 154 ~---------------~~~~~Y~asKaal~~ltr~lA~El-a~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~Pl 217 (256)
T 4fs3_A 154 V---------------QNYNVMGVAKASLEANVKYLALDL-GPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKERAPL 217 (256)
T ss_dssp C---------------TTTHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTT
T ss_pred c---------------ccchhhHHHHHHHHHHHHHHHHHh-CccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhcCCC
Confidence 5 888999999999999999999999 88999999999999999999875 3455677779999
Q ss_pred ccc-CCCC
Q 022369 291 FIF-NPQE 297 (298)
Q Consensus 291 ~~~-~pe~ 297 (298)
+|+ +|||
T Consensus 218 ~R~g~pee 225 (256)
T 4fs3_A 218 KRNVDQVE 225 (256)
T ss_dssp SSCCCHHH
T ss_pred CCCcCHHH
Confidence 999 8875
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=313.39 Aligned_cols=213 Identities=26% Similarity=0.408 Sum_probs=192.7
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.. ...++++|++|++++++++
T Consensus 4 ~~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~Dv~d~~~v~~~~ 74 (248)
T 3op4_A 4 FMNLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGD---------NGKGMALNVTNPESIEAVL 74 (248)
T ss_dssp TTCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG---------GEEEEECCTTCHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc---------cceEEEEeCCCHHHHHHHH
Confidence 4568899999999999999999999999999999999999998888777643 5778999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||.+++.+.
T Consensus 75 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~----- 149 (248)
T 3op4_A 75 KAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGN----- 149 (248)
T ss_dssp HHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC-----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCC-----
Confidence 999999999999999999988888899999999999999999999999999999999889999999999876665
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH-HHHHHHHhhhhccc-CCCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK-IVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~-~~~~~~~~~p~~~~-~pe~ 297 (298)
++...|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++.+...+ ..+......|.+++ +|||
T Consensus 150 ----------~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~p~~r~~~p~d 218 (248)
T 3op4_A 150 ----------AGQANYAAAKAGVIGFTKSMAREV-ASRGVTVNTVAPGFIETDMTKALNDEQRTATLAQVPAGRLGDPRE 218 (248)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSTTTTTSCHHHHHHHHHTCTTCSCBCHHH
T ss_pred ----------CCChHHHHHHHHHHHHHHHHHHHH-HHhCeEEEEEeeCCCCCchhhhcCHHHHHHHHhcCCCCCCcCHHH
Confidence 788899999999999999999999 8889999999999999999887644 34445567888887 7764
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-44 Score=313.30 Aligned_cols=220 Identities=21% Similarity=0.276 Sum_probs=196.1
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
|.++.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+.. +.++.++++|++|+++++
T Consensus 2 p~~m~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~~~~~v~ 76 (262)
T 3pk0_A 2 PGSMFDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLG-----SGKVIGVQTDVSDRAQCD 76 (262)
T ss_dssp -CCTTCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTS-----SSCEEEEECCTTSHHHHH
T ss_pred CCCccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhC-----CCcEEEEEcCCCCHHHHH
Confidence 345678899999999999999999999999999999999999999999988886532 137899999999999999
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccc-cCCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY-VGFV 215 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~-~~~~ 215 (298)
++++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..+. .+.
T Consensus 77 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~- 155 (262)
T 3pk0_A 77 ALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGY- 155 (262)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTBCC-
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCC-
Confidence 999999999999999999999988888999999999999999999999999999999999888999999998764 333
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch-HHHHHHHHhhhhccc-
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIPYFIF- 293 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~-~~~~~~~~~~p~~~~- 293 (298)
+....|++||+++++|+++++.|+ .++||+||+|+||+|+|++..... +..+.....+|++++
T Consensus 156 --------------~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~ 220 (262)
T 3pk0_A 156 --------------PGWSHYGATKAAQLGFMRTAAIEL-APHKITVNAIMPGNIMTEGLLENGEEYIASMARSIPAGALG 220 (262)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCHHHHTTCHHHHHHHHTTSTTSSCB
T ss_pred --------------CCChhhHHHHHHHHHHHHHHHHHH-HhhCcEEEEEEeCcCcCccccccCHHHHHHHHhcCCCCCCc
Confidence 778899999999999999999999 888999999999999999876553 344555667888887
Q ss_pred CCCC
Q 022369 294 NPQE 297 (298)
Q Consensus 294 ~pe~ 297 (298)
+|||
T Consensus 221 ~p~d 224 (262)
T 3pk0_A 221 TPED 224 (262)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7764
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=314.45 Aligned_cols=217 Identities=22% Similarity=0.273 Sum_probs=192.2
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+..+. .++.++++|++|+++++++++
T Consensus 4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~----~~~~~~~~Dv~~~~~v~~~~~ 79 (265)
T 3lf2_A 4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPG----ARLFASVCDVLDALQVRAFAE 79 (265)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTT----CCEEEEECCTTCHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCC----ceEEEEeCCCCCHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999888764332 358999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.+|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..+..+.
T Consensus 80 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 153 (265)
T 3lf2_A 80 ACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPE------ 153 (265)
T ss_dssp HHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCC------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCC------
Confidence 99999999999999999988888999999999999999999999999999999999889999999999876655
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch----------HHHHHHHHh---
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP----------KIVQAAYHL--- 287 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~----------~~~~~~~~~--- 287 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+... +........
T Consensus 154 ---------~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (265)
T 3lf2_A 154 ---------PHMVATSAARAGVKNLVRSMAFEF-APKGVRVNGILIGLVESGQWRRRFEAREERELDWAQWTAQLARNKQ 223 (265)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHTC------CHHHHHHHHHHHTT
T ss_pred ---------CCchhhHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCcCcCchhhhhhhhhhhhccCHHHHHHHHhhccC
Confidence 788899999999999999999999 888999999999999999865421 112222222
Q ss_pred hhhccc-CCCC
Q 022369 288 IPYFIF-NPQE 297 (298)
Q Consensus 288 ~p~~~~-~pe~ 297 (298)
.|++++ +|||
T Consensus 224 ~p~~r~~~ped 234 (265)
T 3lf2_A 224 IPLGRLGKPIE 234 (265)
T ss_dssp CTTCSCBCHHH
T ss_pred CCcCCCcCHHH
Confidence 788887 7765
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=312.63 Aligned_cols=215 Identities=24% Similarity=0.292 Sum_probs=193.6
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++++|++|++++++++
T Consensus 7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~ 80 (256)
T 3gaf_A 7 PFHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQA------GGKAIGLECNVTDEQHREAVI 80 (256)
T ss_dssp TTCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHH
Confidence 35788999999999999999999999999999999999999999998888653 247899999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+++|++|+||||||+....++ +.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||.+++.+.
T Consensus 81 ~~~~~~~g~id~lv~nAg~~~~~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 154 (256)
T 3gaf_A 81 KAALDQFGKITVLVNNAGGGGPKPF-DMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTN----- 154 (256)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCC-----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCC-CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCC-----
Confidence 9999999999999999999877777 8999999999999999999999999999999889999999999876655
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc--hHHHHHHHHhhhhccc-CCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~--~~~~~~~~~~~p~~~~-~pe 296 (298)
++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+.. ++..+......|++++ +||
T Consensus 155 ----------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~~~ 223 (256)
T 3gaf_A 155 ----------VRMASYGSSKAAVNHLTRNIAFDV-GPMGIRVNAIAPGAIKTDALATVLTPEIERAMLKHTPLGRLGEAQ 223 (256)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCHHHHHHCCHHHHHHHHTTCTTSSCBCHH
T ss_pred ----------CCchHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEEEccccCchhhhccCHHHHHHHHhcCCCCCCCCHH
Confidence 778899999999999999999999 88899999999999999997643 3444555667888887 766
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 224 d 224 (256)
T 3gaf_A 224 D 224 (256)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-44 Score=313.73 Aligned_cols=215 Identities=20% Similarity=0.290 Sum_probs=195.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+. +.++.++++|++|+++++++++
T Consensus 22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~ 95 (271)
T 4ibo_A 22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNV------GHDAEAVAFDVTSESEIIEAFA 95 (271)
T ss_dssp GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHT------TCCEEECCCCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999998888653 2478999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..+..+.
T Consensus 96 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~------ 169 (271)
T 4ibo_A 96 RLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELAR------ 169 (271)
T ss_dssp HHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBC------
T ss_pred HHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCC------
Confidence 99999999999999999988888899999999999999999999999999999999888999999999876655
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~pe 296 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+.. ++..+......|++++ +||
T Consensus 170 ---------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~pe 239 (271)
T 4ibo_A 170 ---------ATVAPYTVAKGGIKMLTRAMAAEW-AQYGIQANAIGPGYMLTDMNQALIDNPEFDAWVKARTPAKRWGKPQ 239 (271)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHHHHHCHHHHHHHHHHSTTCSCBCGG
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHHH-hhhCeEEEEEEeccEeCcchhhcccCHHHHHHHHhcCCCCCCcCHH
Confidence 778889999999999999999999 88899999999999999998754 3444555668899888 887
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 240 d 240 (271)
T 4ibo_A 240 E 240 (271)
T ss_dssp G
T ss_pred H
Confidence 6
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-44 Score=312.50 Aligned_cols=217 Identities=25% Similarity=0.375 Sum_probs=194.5
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+... .++.++++|++|++++++++
T Consensus 15 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~Dv~~~~~v~~~~ 89 (266)
T 4egf_A 15 VLRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG-----TDVHTVAIDLAEPDAPAELA 89 (266)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-----CCEEEEECCTTSTTHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-----CcEEEEEecCCCHHHHHHHH
Confidence 4578899999999999999999999999999999999999999999888876432 37999999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++ .|+|||+||..++.+.
T Consensus 90 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 165 (266)
T 4egf_A 90 RRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPL---- 165 (266)
T ss_dssp HHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC----
T ss_pred HHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCC----
Confidence 99999999999999999998888889999999999999999999999999999998866 6899999999876655
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-C
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~ 294 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+.. ++..+......|++++ +
T Consensus 166 -----------~~~~~Y~asK~a~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~ 233 (266)
T 4egf_A 166 -----------PDHYAYCTSKAGLVMATKVLAREL-GPHGIRANSVCPTVVLTEMGQRVWGDEAKSAPMIARIPLGRFAV 233 (266)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCBCSHHHHHHTCSHHHHHHHHTTCTTSSCBC
T ss_pred -----------CCChHHHHHHHHHHHHHHHHHHHH-hhhCeEEEEEEeCCCcCchhhhhccChHHHHHHHhcCCCCCCcC
Confidence 778889999999999999999999 88899999999999999997643 3344455567888887 7
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 234 p~d 236 (266)
T 4egf_A 234 PHE 236 (266)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=310.94 Aligned_cols=218 Identities=22% Similarity=0.288 Sum_probs=196.2
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++++|++|++++++++
T Consensus 27 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~d~~~v~~~~ 100 (276)
T 3r1i_A 27 LFDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGV------GGKALPIRCDVTQPDQVRGML 100 (276)
T ss_dssp GGCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT------TCCCEEEECCTTCHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCHHHHHHHH
Confidence 34788999999999999999999999999999999999999999998888653 247889999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++ +|+||++||..++.+..
T Consensus 101 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~--- 177 (276)
T 3r1i_A 101 DQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINI--- 177 (276)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCC---
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCC---
Confidence 99999999999999999998888888999999999999999999999999999999876 48999999988765431
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHHhhhhccc-CCCC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~~~-~pe~ 297 (298)
.+....|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++.+..++..+.+....|++++ +|||
T Consensus 178 ----------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~p~~r~~~ped 246 (276)
T 3r1i_A 178 ----------PQQVSHYCTSKAAVVHLTKAMAVEL-APHQIRVNSVSPGYIRTELVEPLADYHALWEPKIPLGRMGRPEE 246 (276)
T ss_dssp ----------SSCCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSTTTGGGGGGHHHHGGGSTTSSCBCGGG
T ss_pred ----------CCCcchHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEeeCCCcCCccccchHHHHHHHhcCCCCCCcCHHH
Confidence 1356789999999999999999999 888999999999999999998877666666678899888 8876
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-44 Score=312.27 Aligned_cols=215 Identities=27% Similarity=0.409 Sum_probs=193.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.. .++.++.+|++|+++++++++
T Consensus 24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~ 97 (270)
T 3ftp_A 24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAG------LEGRGAVLNVNDATAVDALVE 97 (270)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHT------CCCEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEEeCCCHHHHHHHHH
Confidence 46889999999999999999999999999999999999999999988887642 367889999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||.+++.+.
T Consensus 98 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 171 (270)
T 3ftp_A 98 STLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGN------ 171 (270)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCC------
Confidence 99999999999999999988888889999999999999999999999999999999889999999999876655
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHHhhhhccc-CCCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~p~~~~-~pe~ 297 (298)
++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+..++. .+......|++++ +|||
T Consensus 172 ---------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~p~~r~~~ped 240 (270)
T 3ftp_A 172 ---------PGQVNYAAAKAGVAGMTRALAREI-GSRGITVNCVAPGFIDTDMTKGLPQEQQTALKTQIPLGRLGSPED 240 (270)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSHHHHHSCHHHHHHHHTTCTTCSCBCHHH
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHHH-hhhCeEEEEEEeCCCcCcchhhcCHHHHHHHHhcCCCCCCCCHHH
Confidence 778899999999999999999999 88899999999999999998766543 3344457788877 7764
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=307.03 Aligned_cols=212 Identities=20% Similarity=0.251 Sum_probs=191.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEE-EcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
++|++|||||++|||+++|++|+++|++|+++ +|+.++++++.+++.+. +.++.++++|++|+++++++++++
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKL------GVKVLVVKANVGQPAKIKEMFQQI 76 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999997 89999898888887642 247999999999999999999999
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..++.+.
T Consensus 77 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~-------- 148 (258)
T 3oid_A 77 DETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYL-------- 148 (258)
T ss_dssp HHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBC--------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCC--------
Confidence 999999999999999988888899999999999999999999999999999999989999999999866654
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhhccc-CCCC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~~~~-~pe~ 297 (298)
++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+... +..+......|++++ +|||
T Consensus 149 -------~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~~~d 219 (258)
T 3oid_A 149 -------ENYTTVGVSKAALEALTRYLAVEL-SPKQIIVNAVSGGAIDTDALKHFPNREDLLEDARQNTPAGRMVEIKD 219 (258)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECCBCSGGGGGCTTHHHHHHHHHHHCTTSSCBCHHH
T ss_pred -------CCcHHHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEeeCCCcChhhhhcccCHHHHHHHHhcCCCCCCcCHHH
Confidence 778899999999999999999999 888999999999999999987763 334555567888877 7664
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-44 Score=311.56 Aligned_cols=217 Identities=26% Similarity=0.385 Sum_probs=184.1
Q ss_pred CCCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHH
Q 022369 56 NPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSV 135 (298)
Q Consensus 56 ~~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v 135 (298)
.+..+.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++++|++|++++
T Consensus 18 g~~~m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~d~~~v 88 (266)
T 3grp_A 18 GPGSMFKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL---------GKDVFVFSANLSDRKSI 88 (266)
T ss_dssp ---CTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---------CSSEEEEECCTTSHHHH
T ss_pred CCcchhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCceEEEEeecCCHHHH
Confidence 345567889999999999999999999999999999999999999888876554 13789999999999999
Q ss_pred HHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 136 VRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 136 ~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||.+++.+.
T Consensus 89 ~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~- 167 (266)
T 3grp_A 89 KQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGN- 167 (266)
T ss_dssp HHHHHHHHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-------
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCC-
Confidence 9999999999999999999999988888889999999999999999999999999999999888999999999877665
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHHhhhhccc-
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYHLIPYFIF- 293 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~p~~~~- 293 (298)
++...|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++.+...+. .+......|++++
T Consensus 168 --------------~~~~~Y~asKaa~~~~~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~ 232 (266)
T 3grp_A 168 --------------PGQTNYCAAKAGLIGFSKALAQEI-ASRNITVNCIAPGFIKSAMTDKLNEKQKEAIMAMIPMKRMG 232 (266)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSHHHHTCCHHHHHHHHTTCTTCSCB
T ss_pred --------------CCchhHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEeeCcCCCchhhccCHHHHHHHHhcCCCCCCc
Confidence 778889999999999999999999 78899999999999999998776443 4445567888887
Q ss_pred CCCC
Q 022369 294 NPQE 297 (298)
Q Consensus 294 ~pe~ 297 (298)
+|||
T Consensus 233 ~~ed 236 (266)
T 3grp_A 233 IGEE 236 (266)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6664
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=312.83 Aligned_cols=219 Identities=25% Similarity=0.333 Sum_probs=195.2
Q ss_pred CCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 58 LPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 58 ~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
..+.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+.. ..++.++++|++|++++++
T Consensus 34 ~~m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~d~~~v~~ 108 (293)
T 3rih_A 34 KVMFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELG-----AGNVIGVRLDVSDPGSCAD 108 (293)
T ss_dssp CCTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSS-----SSCEEEEECCTTCHHHHHH
T ss_pred ccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhC-----CCcEEEEEEeCCCHHHHHH
Confidence 34567899999999999999999999999999999999999999999888875531 1378999999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccc-cCCCC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY-VGFVD 216 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~-~~~~~ 216 (298)
+++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||..+. .+.
T Consensus 109 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~~~-- 186 (293)
T 3rih_A 109 AARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVTGY-- 186 (293)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTBBC--
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccCCC--
Confidence 99999999999999999999988888999999999999999999999999999999999888999999998764 333
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch-HHHHHHHHhhhhccc-C
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~-~~~~~~~~~~p~~~~-~ 294 (298)
++...|++||+++.+|+++|+.|+ .++||+||+|+||+|+|++..... +..+.....+|++++ +
T Consensus 187 -------------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~ 252 (293)
T 3rih_A 187 -------------PGWSHYGASKAAQLGFMRTAAIEL-APRGVTVNAILPGNILTEGLVDMGEEYISGMARSIPMGMLGS 252 (293)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCHHHHHTCHHHHHHHHTTSTTSSCBC
T ss_pred -------------CCCHHHHHHHHHHHHHHHHHHHHH-hhhCeEEEEEecCCCcCcchhhccHHHHHHHHhcCCCCCCCC
Confidence 778899999999999999999999 888999999999999999876553 344555667888887 7
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 253 p~d 255 (293)
T 3rih_A 253 PVD 255 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-43 Score=309.25 Aligned_cols=214 Identities=29% Similarity=0.392 Sum_probs=190.4
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
..+++||++|||||++|||+++|++|+++|++|++++| +.+.++++.+++.+. +.++.++++|++|+++++++
T Consensus 23 ~~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~d~~~v~~~ 96 (269)
T 4dmm_A 23 ALPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAA------GGEAFAVKADVSQESEVEAL 96 (269)
T ss_dssp -CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHH
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHH
Confidence 45688999999999999999999999999999999998 667777777777653 24789999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||.++..+.
T Consensus 97 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 172 (269)
T 4dmm_A 97 FAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGN---- 172 (269)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCC----
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC----
Confidence 9999999999999999999988888889999999999999999999999999999999889999999999876665
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHHhhhhccc-CCCC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~~~-~pe~ 297 (298)
++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|+|.+.... +......|++++ +|||
T Consensus 173 -----------~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~--~~~~~~~p~~r~~~~~d 238 (269)
T 4dmm_A 173 -----------PGQANYSAAKAGVIGLTKTVAKEL-ASRGITVNAVAPGFIATDMTSELAA--EKLLEVIPLGRYGEAAE 238 (269)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBTTSCSCHHHH--HHHGGGCTTSSCBCHHH
T ss_pred -----------CCchhHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEEECCCcCcccccccH--HHHHhcCCCCCCCCHHH
Confidence 778889999999999999999999 7889999999999999999876533 344557788777 6654
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=310.33 Aligned_cols=216 Identities=26% Similarity=0.314 Sum_probs=190.9
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++++|++|++++++++
T Consensus 3 m~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~ 76 (280)
T 3tox_A 3 MSRLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGG------GGEAAALAGDVGDEALHEALV 76 (280)
T ss_dssp -CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTT------TCCEEECCCCTTCHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHH
Confidence 34678999999999999999999999999999999999999999888877542 247899999999999999999
Q ss_pred HHHhcccCCccEEEEccCCC-CCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccc-cCCCCc
Q 022369 140 EAWNGRLGPLHVLINNAGIF-SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY-VGFVDT 217 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~-~~~~~~ 217 (298)
+++.+++|++|+||||||+. ...++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..++ .+.
T Consensus 77 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~--- 153 (280)
T 3tox_A 77 ELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGF--- 153 (280)
T ss_dssp HHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTBCC---
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcCCC---
Confidence 99999999999999999986 3567889999999999999999999999999999999989999999998865 333
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC-----chHHHHHHHHhhhhcc
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD-----LPKIVQAAYHLIPYFI 292 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~-----~~~~~~~~~~~~p~~~ 292 (298)
++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++... .++..+......|+++
T Consensus 154 ------------~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r 220 (280)
T 3tox_A 154 ------------AGVAPYAASKAGLIGLVQALAVEL-GARGIRVNALLPGGTDTPANFANLPGAAPETRGFVEGLHALKR 220 (280)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBSSTTSGGGSTTCCTHHHHHHHTTSTTSS
T ss_pred ------------CCchhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEECCCCCchhhhhccccCHHHHHHHhccCccCC
Confidence 778889999999999999999999 8889999999999999998754 2444455556778877
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 221 ~~~ped 226 (280)
T 3tox_A 221 IARPEE 226 (280)
T ss_dssp CBCHHH
T ss_pred CcCHHH
Confidence 7 7764
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-43 Score=309.13 Aligned_cols=218 Identities=19% Similarity=0.218 Sum_probs=194.4
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
....++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++..... .++.++++|++|+++++++
T Consensus 21 ~~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~ 95 (277)
T 4fc7_A 21 CPDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATG-----RRCLPLSMDVRAPPAVMAA 95 (277)
T ss_dssp CTTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHS-----SCEEEEECCTTCHHHHHHH
T ss_pred CccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-----CcEEEEEcCCCCHHHHHHH
Confidence 34568899999999999999999999999999999999999999998888865432 4799999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||..+..+.
T Consensus 96 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 171 (277)
T 4fc7_A 96 VDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQ---- 171 (277)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTC----
T ss_pred HHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCC----
Confidence 9999999999999999999988888899999999999999999999999999999998888999999999877665
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC----chHHHHHHHHhhhhccc-
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD----LPKIVQAAYHLIPYFIF- 293 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~----~~~~~~~~~~~~p~~~~- 293 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++... ..+..+......|++++
T Consensus 172 -----------~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~~r~~ 239 (277)
T 4fc7_A 172 -----------ALQVHAGSAKAAVDAMTRHLAVEW-GPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTASPLQRLG 239 (277)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBSSSHHHHHHSCCHHHHHHHHHTSTTSSCB
T ss_pred -----------CCcHHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEECCEecchhhhhccCCHHHHHHHhccCCCCCCc
Confidence 778889999999999999999999 8889999999999999986421 23445556668888888
Q ss_pred CCCC
Q 022369 294 NPQE 297 (298)
Q Consensus 294 ~pe~ 297 (298)
+|||
T Consensus 240 ~p~d 243 (277)
T 4fc7_A 240 NKTE 243 (277)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 7765
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-43 Score=305.78 Aligned_cols=213 Identities=19% Similarity=0.184 Sum_probs=173.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++++. +.++.++++|++|++++++++++
T Consensus 4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~ 77 (252)
T 3h7a_A 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAA------GGRIVARSLDARNEDEVTAFLNA 77 (252)
T ss_dssp -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeEEEEECcCCCHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999888764 24799999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+. |++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||.+++.+.
T Consensus 78 ~~~~-g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 149 (252)
T 3h7a_A 78 ADAH-APLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGG------- 149 (252)
T ss_dssp HHHH-SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCC-------
T ss_pred HHhh-CCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCC-------
Confidence 9999 99999999999988888899999999999999999999999999999999888999999999876665
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEE-EEeeCCccccCccCCchH-HHHHHHHhhhhcccCCCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINV-VCVSPGIVSTNVARDLPK-IVQAAYHLIPYFIFNPQE 297 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v-~~v~Pg~v~T~~~~~~~~-~~~~~~~~~p~~~~~pe~ 297 (298)
++...|++||+|+.+|+++|+.|+ .++||+| |+|+||+|+|+|.+...+ ..+......|.+..+|||
T Consensus 150 --------~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~v~n~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ped 218 (252)
T 3h7a_A 150 --------SGFAAFASAKFGLRAVAQSMAREL-MPKNIHVAHLIIDSGVDTAWVRERREQMFGKDALANPDLLMPPAA 218 (252)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC---------------------------CCHHH
T ss_pred --------CCCccHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEecCCccCChhhhccchhhhhhhhhcCCccCCCHHH
Confidence 778899999999999999999999 8889999 999999999999876533 222333455655336554
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=307.10 Aligned_cols=212 Identities=22% Similarity=0.302 Sum_probs=187.4
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .++.++++|++|+++++++++
T Consensus 2 ~~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~ 72 (247)
T 3rwb_A 2 ERLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIG---------KKARAIAADISDPGSVKALFA 72 (247)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC---------TTEEECCCCTTCHHHHHHHHH
T ss_pred CCcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CceEEEEcCCCCHHHHHHHHH
Confidence 46789999999999999999999999999999999999998888877651 378999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++ .|+||++||..++.+.
T Consensus 73 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 147 (247)
T 3rwb_A 73 EIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGT----- 147 (247)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTC-----
T ss_pred HHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCC-----
Confidence 9999999999999999998888889999999999999999999999999999999876 7999999999876665
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHH-hhhhccc-CCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYH-LIPYFIF-NPQ 296 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~-~~p~~~~-~pe 296 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+..+.. ...... ..|++++ +||
T Consensus 148 ----------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~pe 216 (247)
T 3rwb_A 148 ----------PNMAAYVAAKGGVIGFTRALATEL-GKYNITANAVTPGLIESDGVKASPHNEAFGFVEMLQAMKGKGQPE 216 (247)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHTSGGGGGHHHHHHHSSSCSCBCHH
T ss_pred ----------CCchhhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcCcCccccccChhHHHHHHhcccccCCCcCHH
Confidence 778899999999999999999999 88899999999999999987654322 222223 3677666 665
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 217 d 217 (247)
T 3rwb_A 217 H 217 (247)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-43 Score=302.37 Aligned_cols=213 Identities=25% Similarity=0.374 Sum_probs=190.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+.+|++|||||++|||+++|++|+++|++|++++| +.++++++.+++... +.++.++++|++|++++++++++
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~~~ 75 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAK------GVDSFAIQANVADADEVKAMIKE 75 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHH
Confidence 45799999999999999999999999999999887 557788887777653 24789999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..++.+.
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 148 (246)
T 3osu_A 76 VVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGN------- 148 (246)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCC-------
Confidence 9999999999999999988888899999999999999999999999999999999889999999998876665
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH-HHHHHHHhhhhccc-CCCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK-IVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~-~~~~~~~~~p~~~~-~pe~ 297 (298)
++...|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++.+...+ ..+......|++++ +|||
T Consensus 149 --------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~~~d 217 (246)
T 3osu_A 149 --------PGQANYVATKAGVIGLTKSAAREL-ASRGITVNAVAPGFIVSDMTDALSDELKEQMLTQIPLARFGQDTD 217 (246)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBGGGCCSCSCHHHHHHHHTTCTTCSCBCHHH
T ss_pred --------CCChHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEECCCcCCcccccCHHHHHHHHhcCCCCCCcCHHH
Confidence 778889999999999999999999 8889999999999999999887644 34455567888877 6654
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-43 Score=305.86 Aligned_cols=214 Identities=21% Similarity=0.252 Sum_probs=189.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
..++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++++|++|+++++++++
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~ 80 (264)
T 3ucx_A 7 GLLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDT------GRRALSVGTDITDDAQVAHLVD 80 (264)
T ss_dssp CTTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred CCcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999998888763 2479999999999999999999
Q ss_pred HHhcccCCccEEEEccCCC-CCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIF-SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+++|++|+||||||+. ...++.+.+.++|++.+++|+.++++++++++|.|++++ |+|||+||..+..+.
T Consensus 81 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~----- 154 (264)
T 3ucx_A 81 ETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GAVVNVNSMVVRHSQ----- 154 (264)
T ss_dssp HHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CEEEEECCGGGGCCC-----
T ss_pred HHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEECcchhccCC-----
Confidence 9999999999999999985 567788999999999999999999999999999998866 999999999876655
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch------------HHHHHHHHh
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP------------KIVQAAYHL 287 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~------------~~~~~~~~~ 287 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+... +..+.....
T Consensus 155 ----------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (264)
T 3ucx_A 155 ----------AKYGAYKMAKSALLAMSQTLATEL-GEKGIRVNSVLPGYIWGGTLKSYFEHQAGKYGTSVEDIYNAAAAG 223 (264)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEESSCBSHHHHHHHHHHHHHTTCCHHHHHHHHHTT
T ss_pred ----------CccHHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEecCccccccHHHHHHhhhhhcCCCHHHHHHHHhcc
Confidence 778899999999999999999999 888999999999999999976532 223444456
Q ss_pred hhhccc-CCCC
Q 022369 288 IPYFIF-NPQE 297 (298)
Q Consensus 288 ~p~~~~-~pe~ 297 (298)
.|++++ +|||
T Consensus 224 ~p~~r~~~p~d 234 (264)
T 3ucx_A 224 SDLKRLPTEDE 234 (264)
T ss_dssp SSSSSCCBHHH
T ss_pred CCcccCCCHHH
Confidence 788777 6664
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=309.46 Aligned_cols=213 Identities=23% Similarity=0.191 Sum_probs=170.8
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+.++.+|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++++|++|++++++++
T Consensus 23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~d~~~v~~~~ 93 (272)
T 4dyv_A 23 MSKTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIG---------DDALCVPTDVTDPDSVRALF 93 (272)
T ss_dssp -----CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT---------SCCEEEECCTTSHHHHHHHH
T ss_pred hcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---------CCeEEEEecCCCHHHHHHHH
Confidence 446789999999999999999999999999999999999999888877762 36889999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCC-CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC--CCeEEEEcCCccccCCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSI-GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS--PSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~--~g~Iv~isS~~~~~~~~~ 216 (298)
+++.+++|++|+||||||+... .++.+.+.++|++.+++|+.|+++++++++|.|++++ .|+|||+||..++.+.
T Consensus 94 ~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~-- 171 (272)
T 4dyv_A 94 TATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPR-- 171 (272)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCC--
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCC--
Confidence 9999999999999999998754 6788999999999999999999999999999999876 6899999999876665
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHHhhhhccc-CC
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~~~-~p 295 (298)
++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|+|.+...+.........|..++ +|
T Consensus 172 -------------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p 237 (272)
T 4dyv_A 172 -------------PYSAPYTATKHAITGLTKSTSLDG-RVHDIACGQIDIGNADTPMAQKMKAGVPQADLSIKVEPVMDV 237 (272)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEEECC------------------------CH
T ss_pred -------------CCchHHHHHHHHHHHHHHHHHHHh-CccCEEEEEEEECcccChhhhhhcccchhhhhcccccCCCCH
Confidence 778889999999999999999999 888999999999999999987764433333334455544 55
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 238 ed 239 (272)
T 4dyv_A 238 AH 239 (272)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-43 Score=304.80 Aligned_cols=212 Identities=22% Similarity=0.299 Sum_probs=189.3
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .++.++++|++|+++++++++
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~ 74 (259)
T 4e6p_A 4 KRLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIG---------PAAYAVQMDVTRQDSIDAAIA 74 (259)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------TTEEEEECCTTCHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CCceEEEeeCCCHHHHHHHHH
Confidence 45789999999999999999999999999999999999999888877652 268899999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|.+++ .|+|||+||.+++.+.
T Consensus 75 ~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 149 (259)
T 4e6p_A 75 ATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGE----- 149 (259)
T ss_dssp HHHHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC-----
T ss_pred HHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCC-----
Confidence 9999999999999999998878889999999999999999999999999999998866 7899999999876665
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------------hHHHHHHHHh
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------------PKIVQAAYHL 287 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------------~~~~~~~~~~ 287 (298)
+....|++||+++++|+++++.|+ .++||+||+|+||+|+|++.+.. .+..+.....
T Consensus 150 ----------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (259)
T 4e6p_A 150 ----------ALVAIYCATKAAVISLTQSAGLDL-IKHRINVNAIAPGVVDGEHWDGVDALFARYENRPRGEKKRLVGEA 218 (259)
T ss_dssp ----------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSTTHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred ----------CCChHHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEEECCCccchhhhhhhhhhhhccCChHHHHHHHhcc
Confidence 778889999999999999999999 88899999999999999987543 2333444557
Q ss_pred hhhccc-CCCC
Q 022369 288 IPYFIF-NPQE 297 (298)
Q Consensus 288 ~p~~~~-~pe~ 297 (298)
.|++++ +|||
T Consensus 219 ~p~~r~~~~~d 229 (259)
T 4e6p_A 219 VPFGRMGTAED 229 (259)
T ss_dssp STTSSCBCTHH
T ss_pred CCCCCCcCHHH
Confidence 788887 7765
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-43 Score=307.55 Aligned_cols=213 Identities=26% Similarity=0.311 Sum_probs=187.9
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++++|++|++++++++
T Consensus 22 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~d~~~v~~~~ 92 (277)
T 4dqx_A 22 SMDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIG---------SKAFGVRVDVSSAKDAESMV 92 (277)
T ss_dssp CCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC---------TTEEEEECCTTCHHHHHHHH
T ss_pred cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CceEEEEecCCCHHHHHHHH
Confidence 356889999999999999999999999999999999999988888776641 37889999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||.+++.+.
T Consensus 93 ~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 167 (277)
T 4dqx_A 93 EKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAI----- 167 (277)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCC-----
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCC-----
Confidence 999999999999999999988888899999999999999999999999999999999888999999999876655
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-------hHHHHHHHHhhhhcc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-------PKIVQAAYHLIPYFI 292 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-------~~~~~~~~~~~p~~~ 292 (298)
++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.... .+....+....|+++
T Consensus 168 ----------~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~r 236 (277)
T 4dqx_A 168 ----------ADRTAYVASKGAISSLTRAMAMDH-AKEGIRVNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAVMDR 236 (277)
T ss_dssp ----------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHHTCSCHHHHHHHHHTTSTTCS
T ss_pred ----------CCChhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcCcCchhhhhcccccchhHHHHHHHhcCcccC
Confidence 778899999999999999999999 88899999999999999984321 122223445677777
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 237 ~~~ped 242 (277)
T 4dqx_A 237 MGTAEE 242 (277)
T ss_dssp CBCHHH
T ss_pred CcCHHH
Confidence 7 6654
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-43 Score=309.46 Aligned_cols=215 Identities=26% Similarity=0.335 Sum_probs=188.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
..+++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++++|++|+++++++++
T Consensus 20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~ 93 (279)
T 3sju_A 20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAA------GHDVDGSSCDVTSTDEVHAAVA 93 (279)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999988888653 2479999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhh--hhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFP--SLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp--~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++| .|++++.|+|||+||.+++.+.
T Consensus 94 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~---- 169 (279)
T 3sju_A 94 AAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGV---- 169 (279)
T ss_dssp HHHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCC----
T ss_pred HHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCC----
Confidence 9999999999999999998888889999999999999999999999999999 6888888999999999876665
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------------hHHHHHHHH
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------------PKIVQAAYH 286 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------------~~~~~~~~~ 286 (298)
++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|+|.+.. ++..+.+..
T Consensus 170 -----------~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (279)
T 3sju_A 170 -----------MYAAPYTASKHGVVGFTKSVGFEL-AKTGITVNAVCPGYVETPMAERVREGYARHWGVTEQEVHERFNA 237 (279)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEESSBCSHHHHHHHHSCCSSSCCCHHHHHHHHHT
T ss_pred -----------CCChhHHHHHHHHHHHHHHHHHHH-HhhCcEEEEEeeCcccchHHHHHHhhhhhcccCChHHHHHHHHh
Confidence 778889999999999999999999 88899999999999999987542 233444555
Q ss_pred hhhhccc-CCCC
Q 022369 287 LIPYFIF-NPQE 297 (298)
Q Consensus 287 ~~p~~~~-~pe~ 297 (298)
..|++++ +|||
T Consensus 238 ~~p~~r~~~ped 249 (279)
T 3sju_A 238 KIPLGRYSTPEE 249 (279)
T ss_dssp TCTTSSCBCHHH
T ss_pred cCCCCCCCCHHH
Confidence 7788887 7764
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-43 Score=303.64 Aligned_cols=210 Identities=25% Similarity=0.356 Sum_probs=186.4
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++. .++.++++|++|+++++++++
T Consensus 4 ~~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~ 74 (255)
T 4eso_A 4 GNYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFG---------PRVHALRSDIADLNEIAVLGA 74 (255)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------GGEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC---------CcceEEEccCCCHHHHHHHHH
Confidence 46789999999999999999999999999999999999998888776652 378999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.+|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++ +|+|||+||.+++.+.
T Consensus 75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~------ 146 (255)
T 4eso_A 75 AAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIRE--GGSIVFTSSVADEGGH------ 146 (255)
T ss_dssp HHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEECCGGGSSBC------
T ss_pred HHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhc--CCEEEEECChhhcCCC------
Confidence 99999999999999999988888899999999999999999999999999999976 4899999999876655
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC--chH-----HHHHHHHhhhhccc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD--LPK-----IVQAAYHLIPYFIF 293 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~--~~~-----~~~~~~~~~p~~~~ 293 (298)
++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+. ..+ ..+......|++++
T Consensus 147 ---------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~p~~r~ 216 (255)
T 4eso_A 147 ---------PGMSVYSASKAALVSFASVLAAEL-LPRGIRVNSVSPGFIDTPTKGVAGITEAERAEFKTLGDNITPMKRN 216 (255)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHT-GGGTCEEEEEEECSBCCSSTTCTTSCHHHHHHHHHHHHHHSTTSSC
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEecCcccCcccccccCChhhHHHHHHHHhccCCCCCC
Confidence 788899999999999999999999 8889999999999999999754 222 12233446788887
Q ss_pred -CCCC
Q 022369 294 -NPQE 297 (298)
Q Consensus 294 -~pe~ 297 (298)
+|||
T Consensus 217 ~~ped 221 (255)
T 4eso_A 217 GTADE 221 (255)
T ss_dssp BCHHH
T ss_pred cCHHH
Confidence 7765
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-43 Score=308.24 Aligned_cols=218 Identities=20% Similarity=0.246 Sum_probs=193.1
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+... .+.++.++++|++|+++++++++
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~ 83 (281)
T 3svt_A 7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGA---NGGAIRYEPTDITNEDETARAVD 83 (281)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCC---SSCEEEEEECCTTSHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC---CCceEEEEeCCCCCHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999888876422 12378999999999999999999
Q ss_pred HHhcccCCccEEEEccCC-CCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGI-FSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~-~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+++|++|+||||||+ ....++.+.+.++|++.+++|+.|+++++++++|+|.+++.|+|||+||.+++.+.
T Consensus 84 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 158 (281)
T 3svt_A 84 AVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTH----- 158 (281)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCC-----
T ss_pred HHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCC-----
Confidence 999999999999999998 45667889999999999999999999999999999999889999999999876655
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-CC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~p 295 (298)
+....|++||+++++|+++++.|+ .++||+||+|+||+|+|++.+.. ++..+.+....|++++ +|
T Consensus 159 ----------~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~r~~~~ 227 (281)
T 3svt_A 159 ----------RWFGAYGVTKSAVDHLMQLAADEL-GASWVRVNSIRPGLIRTDLVAAITESAELSSDYAMCTPLPRQGEV 227 (281)
T ss_dssp ----------TTCTHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHHHCSSSSCBCH
T ss_pred ----------CCChhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCcCcCcchhhcccCHHHHHHHHhcCCCCCCCCH
Confidence 777889999999999999999999 88899999999999999998653 3444555667788777 66
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 228 ~d 229 (281)
T 3svt_A 228 ED 229 (281)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-43 Score=308.79 Aligned_cols=198 Identities=24% Similarity=0.271 Sum_probs=177.7
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++++|++|++++++++
T Consensus 23 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~ 96 (283)
T 3v8b_A 23 MMNQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGA------GGQAIALEADVSDELQMRNAV 96 (283)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTT------TCCEEEEECCTTCHHHHHHHH
T ss_pred hcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHH
Confidence 45678999999999999999999999999999999999999999888887542 247899999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||.++....
T Consensus 97 ~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~---- 172 (283)
T 3v8b_A 97 RDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTF---- 172 (283)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC----
T ss_pred HHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCC----
Confidence 999999999999999999864 378899999999999999999999999999999999889999999999865521
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+.++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+..
T Consensus 173 ---------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~ 221 (283)
T 3v8b_A 173 ---------TTPGATAYTATKAAQVAIVQQLALEL-GKHHIRVNAVCPGAIETNISDNT 221 (283)
T ss_dssp ---------CSTTCHHHHHHHHHHHHHHHHHHHHT-TTTTEEEEEEEECSBSSCTTCCT
T ss_pred ---------CCCCchHHHHHHHHHHHHHHHHHHHh-CccCcEEEEEEeCCCcCCccccc
Confidence 22677889999999999999999999 88999999999999999998754
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-43 Score=305.44 Aligned_cols=215 Identities=21% Similarity=0.331 Sum_probs=187.3
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++++|++|+++++++++
T Consensus 2 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~ 75 (257)
T 3imf_A 2 NAMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQF------PGQILTVQMDVRNTDDIQKMIE 75 (257)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCS------TTCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999888776432 2479999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhc-CCCCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR-GSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~-~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|.+ ++.|+|||+||..+..+.
T Consensus 76 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 150 (257)
T 3imf_A 76 QIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAG----- 150 (257)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCC-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCC-----
Confidence 99999999999999999988888899999999999999999999999999999954 557999999999876655
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCC-CCCcEEEEeeCCccccCccCCc----hHHHHHHHHhhhhccc-
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPA-ESGINVVCVSPGIVSTNVARDL----PKIVQAAYHLIPYFIF- 293 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~-~~gI~v~~v~Pg~v~T~~~~~~----~~~~~~~~~~~p~~~~- 293 (298)
+....|++||+|+.+|+++|+.|+ . ++||+||+|+||+|+|++.... ++..+......|++++
T Consensus 151 ----------~~~~~Y~asKaa~~~l~~~la~e~-~~~~gIrvn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~p~~r~~ 219 (257)
T 3imf_A 151 ----------PGVIHSAAAKAGVLAMTKTLAVEW-GRKYGIRVNAIAPGPIERTGGADKLWISEEMAKRTIQSVPLGRLG 219 (257)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHH-HHHHCCEEEEEEECCBSSCCCC-------CCSHHHHTTSTTCSCB
T ss_pred ----------CCcHHHHHHHHHHHHHHHHHHHHh-ccccCeEEEEEEECCCcCCcchhhcccCHHHHHHHHhcCCCCCCc
Confidence 778889999999999999999999 5 6799999999999999976532 1122344556788777
Q ss_pred CCCC
Q 022369 294 NPQE 297 (298)
Q Consensus 294 ~pe~ 297 (298)
+|||
T Consensus 220 ~ped 223 (257)
T 3imf_A 220 TPEE 223 (257)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6664
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-42 Score=300.97 Aligned_cols=220 Identities=27% Similarity=0.395 Sum_probs=190.2
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
+.+..++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+... .++.++.+|++|+++++
T Consensus 13 ~~~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~Dl~~~~~v~ 87 (267)
T 1vl8_A 13 MKEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG-----VETMAFRCDVSNYEEVK 87 (267)
T ss_dssp ----CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-----CCEEEEECCTTCHHHHH
T ss_pred CCCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-----CeEEEEEcCCCCHHHHH
Confidence 3445678899999999999999999999999999999999999998888877743321 36889999999999999
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc-cccCCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM-HYVGFV 215 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~-~~~~~~ 215 (298)
++++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||.+ +..+.
T Consensus 88 ~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~- 166 (267)
T 1vl8_A 88 KLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTM- 166 (267)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCS-
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhccCC-
Confidence 9999999999999999999999877788899999999999999999999999999999988889999999987 55443
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhcc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFI 292 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~ 292 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+.. ++..+.+....|+++
T Consensus 167 --------------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~ 231 (267)
T 1vl8_A 167 --------------PNISAYAASKGGVASLTKALAKEW-GRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGR 231 (267)
T ss_dssp --------------SSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSS
T ss_pred --------------CCChhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeccCccccccccccChHHHHHHHhhCCCCC
Confidence 677889999999999999999999 78899999999999999997643 233344445678777
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 232 ~~~p~d 237 (267)
T 1vl8_A 232 TGVPED 237 (267)
T ss_dssp CBCGGG
T ss_pred CcCHHH
Confidence 7 7775
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-42 Score=304.03 Aligned_cols=212 Identities=23% Similarity=0.268 Sum_probs=187.5
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .++.++.+|++|+++++++++
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~ 77 (271)
T 3tzq_B 7 AELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVG---------RGAVHHVVDLTNEVSVRALID 77 (271)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHC---------TTCEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC---------CCeEEEECCCCCHHHHHHHHH
Confidence 36889999999999999999999999999999999999999888877651 368889999999999999999
Q ss_pred HHhcccCCccEEEEccCCCC--CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 141 AWNGRLGPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..++.+.
T Consensus 78 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~---- 153 (271)
T 3tzq_B 78 FTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAY---- 153 (271)
T ss_dssp HHHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSBC----
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCCC----
Confidence 99999999999999999873 445778999999999999999999999999999999989999999999876655
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC-CchH-HHHHHHHhhhhccc-CC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR-DLPK-IVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~-~~~~-~~~~~~~~~p~~~~-~p 295 (298)
+....|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++.+ ..++ ..+.+....|.+++ +|
T Consensus 154 -----------~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~p 221 (271)
T 3tzq_B 154 -----------DMSTAYACTKAAIETLTRYVATQY-GRHGVRCNAIAPGLVRTPRLEVGLPQPIVDIFATHHLAGRIGEP 221 (271)
T ss_dssp -----------SSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCTTTC---CHHHHHHHHTTSTTSSCBCH
T ss_pred -----------CCChHHHHHHHHHHHHHHHHHHHH-hhcCEEEEEEEeCCCcCccccccCCHHHHHHHHhcCCCCCCcCH
Confidence 778899999999999999999999 888999999999999999987 3433 34445557788777 66
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 222 ~d 223 (271)
T 3tzq_B 222 HE 223 (271)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=306.05 Aligned_cols=214 Identities=20% Similarity=0.227 Sum_probs=191.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++++|++|+++++++++
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~~~~~~~ 102 (275)
T 4imr_A 29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIAS------GGTAQELAGDLSEAGAGTDLIE 102 (275)
T ss_dssp HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHT------TCCEEEEECCTTSTTHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCeEEEEEecCCCHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999988888663 2478999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+. |++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||.+++.+.
T Consensus 103 ~~~~~-g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~------ 175 (275)
T 4imr_A 103 RAEAI-APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRPK------ 175 (275)
T ss_dssp HHHHH-SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC------
T ss_pred HHHHh-CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCC------
Confidence 99887 99999999999988888899999999999999999999999999999999888999999998866543
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc----hHHHHHHHHhh-hhccc-C
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL----PKIVQAAYHLI-PYFIF-N 294 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~----~~~~~~~~~~~-p~~~~-~ 294 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.... ++..+...... |++++ +
T Consensus 176 ---------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~p~~r~~~ 245 (275)
T 4imr_A 176 ---------SVVTAYAATKAAQHNLIQSQARDF-AGDNVLLNTLAPGLVDTDRNADRRAQDPEGWDEYVRTLNWMGRAGR 245 (275)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCSHHHHHHHHHCHHHHHHHHHHHSTTCSCBC
T ss_pred ---------CCchhhHHHHHHHHHHHHHHHHHh-cccCcEEEEEEeccccCcccccccccChHHHHHHHhhcCccCCCcC
Confidence 667779999999999999999999 88899999999999999997653 33344445555 88888 8
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 246 ped 248 (275)
T 4imr_A 246 PEE 248 (275)
T ss_dssp GGG
T ss_pred HHH
Confidence 876
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-42 Score=297.53 Aligned_cols=214 Identities=25% Similarity=0.352 Sum_probs=193.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++++. +.++.++++|++|++++++++++
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 75 (247)
T 3lyl_A 2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEK------GFKARGLVLNISDIESIQNFFAE 75 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999988888663 24789999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+....++.+.+.++|++.+++|+.+++++++.++|.|.+++.|+||++||..+..+.
T Consensus 76 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 148 (247)
T 3lyl_A 76 IKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGN------- 148 (247)
T ss_dssp HHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCC-------
Confidence 9999999999999999988888889999999999999999999999999999999888999999999876665
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHH-HHHHHhhhhccc-CCCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIV-QAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~-~~~~~~~p~~~~-~pe~ 297 (298)
++...|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++.+...+.. +......|.+++ +|||
T Consensus 149 --------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~d 217 (247)
T 3lyl_A 149 --------PGQTNYCAAKAGVIGFSKSLAYEV-ASRNITVNVVAPGFIATDMTDKLTDEQKSFIATKIPSGQIGEPKD 217 (247)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTTTTSCHHHHHHHHTTSTTCCCBCHHH
T ss_pred --------CCcHHHHHHHHHHHHHHHHHHHHH-HHcCeEEEEEeeCcEecccchhccHHHHHHHhhcCCCCCCcCHHH
Confidence 778889999999999999999999 788999999999999999998875443 334446777776 6654
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=301.92 Aligned_cols=191 Identities=26% Similarity=0.386 Sum_probs=171.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++.+|++|+++++++++++
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~~~~ 75 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDA------GGTALAQVLDVTDRHSVAAFAQAA 75 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999998888763 247899999999999999999999
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||.+++.+.
T Consensus 76 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~-------- 147 (264)
T 3tfo_A 76 VDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVV-------- 147 (264)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC--------
T ss_pred HHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccC--------
Confidence 999999999999999988888899999999999999999999999999999999889999999999877665
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|++||+|+.+|+++|+.|+ . ||+||+|+||+|+|+|.+..
T Consensus 148 -------~~~~~Y~asKaal~~l~~~la~e~-~--gIrvn~v~PG~v~T~~~~~~ 192 (264)
T 3tfo_A 148 -------PTAAVYCATKFAVRAISDGLRQES-T--NIRVTCVNPGVVESELAGTI 192 (264)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHC-S--SEEEEEEEECCC--------
T ss_pred -------CCChhHHHHHHHHHHHHHHHHHhC-C--CCEEEEEecCCCcCcccccc
Confidence 778889999999999999999998 3 99999999999999998765
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=302.10 Aligned_cols=197 Identities=22% Similarity=0.309 Sum_probs=178.5
Q ss_pred CCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC------------chHHHHHHHHHHHhhcCCCCCccEEEE
Q 022369 58 LPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN------------LKAANELIQKWQEEWSGKGLPLNIEAM 125 (298)
Q Consensus 58 ~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (298)
..+.+++||++|||||++|||+++|++|+++|++|++++|+ .+++++..+++... +.++.++
T Consensus 3 ~~m~~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 76 (281)
T 3s55_A 3 GSMADFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKT------GRRCISA 76 (281)
T ss_dssp ---CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHT------TCCEEEE
T ss_pred CcccccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhc------CCeEEEE
Confidence 34567899999999999999999999999999999999997 56666666665542 2479999
Q ss_pred EcCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEE
Q 022369 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINV 205 (298)
Q Consensus 126 ~~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~i 205 (298)
++|++|+++++++++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+
T Consensus 77 ~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~i 156 (281)
T 3s55_A 77 KVDVKDRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTV 156 (281)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred eCCCCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999999999988888899999999999999999999999999999999888999999
Q ss_pred cCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 206 NSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 206 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
||..++.+. +....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+.
T Consensus 157 sS~~~~~~~---------------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~ 211 (281)
T 3s55_A 157 SSMLGHSAN---------------FAQASYVSSKWGVIGLTKCAAHDL-VGYGITVNAVAPGNIETPMTHN 211 (281)
T ss_dssp CCGGGGSCC---------------TTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCSTTTSS
T ss_pred CChhhcCCC---------------CCCchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCcccCccccc
Confidence 999877665 778889999999999999999999 8889999999999999999764
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=305.94 Aligned_cols=197 Identities=23% Similarity=0.305 Sum_probs=175.1
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+.++.+|++|||||++|||+++|++|+++|++|++++| +.+.++++.+++.+.. +.++.++++|++|+++++++
T Consensus 20 ~~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dv~d~~~v~~~ 94 (281)
T 3v2h_A 20 FQSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLS-----SGTVLHHPADMTKPSEIADM 94 (281)
T ss_dssp --CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTC-----SSCEEEECCCTTCHHHHHHH
T ss_pred hhccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhcc-----CCcEEEEeCCCCCHHHHHHH
Confidence 45788999999999999999999999999999999999 6677777777765431 24789999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||.+++.+.
T Consensus 95 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 170 (281)
T 3v2h_A 95 MAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVAS---- 170 (281)
T ss_dssp HHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCC----
Confidence 9999999999999999999988888899999999999999999999999999999999889999999999877665
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+..
T Consensus 171 -----------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~ 217 (281)
T 3v2h_A 171 -----------PFKSAYVAAKHGIMGLTKTVALEV-AESGVTVNSICPGYVLTPLVEKQ 217 (281)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCC------
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEECCCCcCcchhhh
Confidence 778899999999999999999999 88899999999999999997653
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=310.49 Aligned_cols=197 Identities=19% Similarity=0.177 Sum_probs=171.5
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+... ..+.++++|++|++++++++
T Consensus 28 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~ 102 (281)
T 4dry_A 28 KGSGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTG-----NIVRAVVCDVGDPDQVAALF 102 (281)
T ss_dssp ------CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-----SCEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-----CeEEEEEcCCCCHHHHHHHH
Confidence 3467899999999999999999999999999999999999999999888876432 24689999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCC-CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC--CCeEEEEcCCccccCCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSI-GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS--PSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~--~g~Iv~isS~~~~~~~~~ 216 (298)
+++.+++|++|+||||||+... .++.+.+.++|++.+++|+.|+++++++++|.|++++ .|+|||+||.++..+.
T Consensus 103 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~-- 180 (281)
T 4dry_A 103 AAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPR-- 180 (281)
T ss_dssp HHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCC--
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCC--
Confidence 9999999999999999998754 6788999999999999999999999999999999875 7899999999876655
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
++...|++||+|+.+|+++++.|+ .++||+||+|+||+|+|+|.+..
T Consensus 181 -------------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~ 227 (281)
T 4dry_A 181 -------------PNSAPYTATKHAITGLTKSTALDG-RMHDIACGQIDIGNAATDMTARM 227 (281)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEECBCC------
T ss_pred -------------CCChhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEECcCcChhhhhh
Confidence 788899999999999999999999 88899999999999999997654
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-42 Score=301.42 Aligned_cols=214 Identities=27% Similarity=0.364 Sum_probs=187.9
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..+++||++|||||++|||+++|++|+++|++|++++|+ +.+++..+++.+. +.++.++++|++|+++++++.
T Consensus 26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~~ 98 (273)
T 3uf0_A 26 PFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADG------GGSAEAVVADLADLEGAANVA 98 (273)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHHTT------TCEEEEEECCTTCHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHH
Confidence 457899999999999999999999999999999999965 5566666666542 247899999999999999995
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+. .+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||..++.+.
T Consensus 99 ~~-~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~----- 172 (273)
T 3uf0_A 99 EE-LAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGG----- 172 (273)
T ss_dssp HH-HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----
T ss_pred HH-HHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCC-----
Confidence 54 455699999999999988888999999999999999999999999999999999889999999999877665
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-CC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~p 295 (298)
++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+.. ++..+.+....|++++ +|
T Consensus 173 ----------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~p 241 (273)
T 3uf0_A 173 ----------RNVAAYAASKHAVVGLTRALASEW-AGRGVGVNALAPGYVVTANTAALRADDERAAEITARIPAGRWATP 241 (273)
T ss_dssp ----------SSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHHHHTSHHHHHHHHHHSTTSSCBCG
T ss_pred ----------CCChhHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeCCCcCCchhhcccCHHHHHHHHhcCCCCCCCCH
Confidence 778899999999999999999999 88899999999999999997653 3445556678898888 88
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 242 ed 243 (273)
T 3uf0_A 242 ED 243 (273)
T ss_dssp GG
T ss_pred HH
Confidence 76
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-43 Score=307.64 Aligned_cols=192 Identities=25% Similarity=0.347 Sum_probs=176.8
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++++|++|++++++++
T Consensus 24 ~~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~d~~~v~~~~ 94 (277)
T 3gvc_A 24 HPDLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI---------GCGAAACRVDVSDEQQIIAMV 94 (277)
T ss_dssp ---CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH---------CSSCEEEECCTTCHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---------CCcceEEEecCCCHHHHHHHH
Confidence 45789999999999999999999999999999999999999888887665 136889999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||..+..+.
T Consensus 95 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~----- 169 (277)
T 3gvc_A 95 DACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAV----- 169 (277)
T ss_dssp HHHHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC-----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC-----
Confidence 999999999999999999988888899999999999999999999999999999999999999999999876655
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
++...|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++.+.
T Consensus 170 ----------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~ 215 (277)
T 3gvc_A 170 ----------GGTGAYGMSKAGIIQLSRITAAEL-RSSGIRSNTLLPAFVDTPMQQT 215 (277)
T ss_dssp ----------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHH
T ss_pred ----------CCchhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCccCchHHH
Confidence 778899999999999999999999 8889999999999999998653
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=305.06 Aligned_cols=194 Identities=23% Similarity=0.264 Sum_probs=175.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC----------------chHHHHHHHHHHHhhcCCCCCccEEE
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN----------------LKAANELIQKWQEEWSGKGLPLNIEA 124 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+ .++++++.+++... +.++.+
T Consensus 7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 80 (286)
T 3uve_A 7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGH------NRRIVT 80 (286)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTT------TCCEEE
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhc------CCceEE
Confidence 46889999999999999999999999999999999987 66777776666542 247999
Q ss_pred EEcCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCC-CCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeE
Q 022369 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGE-PQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRI 202 (298)
Q Consensus 125 ~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~-~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~I 202 (298)
+++|++|+++++++++++.+++|++|+||||||+..... +.+.+.++|++.+++|+.|+++++++++|+|++++ .|+|
T Consensus 81 ~~~Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~i 160 (286)
T 3uve_A 81 AEVDVRDYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSI 160 (286)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEcCCCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEE
Confidence 999999999999999999999999999999999876654 78899999999999999999999999999998865 7899
Q ss_pred EEEcCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 203 INVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 203 v~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
||+||..++.+. +....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|+|.+.
T Consensus 161 v~isS~~~~~~~---------------~~~~~Y~asKaa~~~~~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~ 218 (286)
T 3uve_A 161 ILTSSVGGLKAY---------------PHTGHYVAAKHGVVGLMRAFGVEL-GQHMIRVNSVHPTHVKTPMLHN 218 (286)
T ss_dssp EEECCGGGTSCC---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBSSTTTSS
T ss_pred EEECchhhccCC---------------CCccHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCcccCCcccc
Confidence 999999876655 778899999999999999999999 8889999999999999999864
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=302.92 Aligned_cols=219 Identities=19% Similarity=0.259 Sum_probs=188.1
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+..++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+..+ +.++.++++|++|+++++++
T Consensus 7 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~ 82 (267)
T 1iy8_A 7 PTTRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAP----DAEVLTTVADVSDEAQVEAY 82 (267)
T ss_dssp ---CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCT----TCCEEEEECCTTSHHHHHHH
T ss_pred CCccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC----CceEEEEEccCCCHHHHHHH
Confidence 34567899999999999999999999999999999999999999888888765421 23788999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCC-CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSI-GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
++++.+++|++|+||||||+... .++.+.+.++|++.+++|+.|++++++.++|.|++++.|+|||+||..++.+.
T Consensus 83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--- 159 (267)
T 1iy8_A 83 VTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGI--- 159 (267)
T ss_dssp HHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBC---
T ss_pred HHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccCC---
Confidence 99999999999999999998765 67888999999999999999999999999999998888999999999876554
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-----hHHHH----HHHHhh
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-----PKIVQ----AAYHLI 288 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-----~~~~~----~~~~~~ 288 (298)
++...|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+.. ++..+ .+....
T Consensus 160 ------------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (267)
T 1iy8_A 160 ------------GNQSGYAAAKHGVVGLTRNSAVEY-GRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVN 226 (267)
T ss_dssp ------------SSBHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred ------------CCCccHHHHHHHHHHHHHHHHHHH-HhcCeEEEEEEeCCCcCcchhccccccChhhhhhHHHHHhccC
Confidence 677889999999999999999999 78899999999999999986532 11112 334456
Q ss_pred hhccc-CCCC
Q 022369 289 PYFIF-NPQE 297 (298)
Q Consensus 289 p~~~~-~pe~ 297 (298)
|++++ +|||
T Consensus 227 p~~r~~~~~d 236 (267)
T 1iy8_A 227 PSKRYGEAPE 236 (267)
T ss_dssp TTCSCBCHHH
T ss_pred CCCCCcCHHH
Confidence 77766 6654
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=302.63 Aligned_cols=211 Identities=23% Similarity=0.294 Sum_probs=169.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .++.++++|++|++++++++++
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~ 74 (257)
T 3tpc_A 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELG---------AAVRFRNADVTNEADATAALAF 74 (257)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC---------------------CEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC---------CceEEEEccCCCHHHHHHHHHH
Confidence 5789999999999999999999999999999999999998888776652 3688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCC----ccChhhHHHHHhhhchHHHHHHHHHhhhhhcC------CCCeEEEEcCCccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQ----KFSKDGYEEHMQVNHLAPALLSILLFPSLIRG------SPSRIINVNSVMHY 211 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~----~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~------~~g~Iv~isS~~~~ 211 (298)
+.+++|++|+||||||+....++. +.+.++|++.+++|+.|+++++++++|+|+++ +.|+|||+||.+++
T Consensus 75 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~ 154 (257)
T 3tpc_A 75 AKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAF 154 (257)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHH
T ss_pred HHHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhc
Confidence 999999999999999997655443 67899999999999999999999999999985 67899999999877
Q ss_pred cCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHH-HHHHHhhhh
Q 022369 212 VGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIV-QAAYHLIPY 290 (298)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~-~~~~~~~p~ 290 (298)
.+. ++...|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++.+..++.. +......|+
T Consensus 155 ~~~---------------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~p~ 218 (257)
T 3tpc_A 155 DGQ---------------IGQAAYAASKGGVAALTLPAAREL-ARFGIRVVTIAPGIFDTPMMAGMPQDVQDALAASVPF 218 (257)
T ss_dssp HCC---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBSCC--------------CCSSS
T ss_pred cCC---------------CCCcchHHHHHHHHHHHHHHHHHH-HHcCeEEEEEEeCCCCChhhccCCHHHHHHHHhcCCC
Confidence 665 778889999999999999999999 888999999999999999987765433 333446676
Q ss_pred -ccc-CCCC
Q 022369 291 -FIF-NPQE 297 (298)
Q Consensus 291 -~~~-~pe~ 297 (298)
+++ +|||
T Consensus 219 ~~r~~~~~d 227 (257)
T 3tpc_A 219 PPRLGRAEE 227 (257)
T ss_dssp SCSCBCHHH
T ss_pred CCCCCCHHH
Confidence 565 6654
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=305.03 Aligned_cols=216 Identities=25% Similarity=0.355 Sum_probs=170.4
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+.++++|++|||||++|||+++|++|+++|++|++++| +.++++++.+++... +.++.++++|++|+++++++
T Consensus 24 m~~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~~ 97 (280)
T 4da9_A 24 MTQKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGL------GARVIFLRADLADLSSHQAT 97 (280)
T ss_dssp CSCCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHT------TCCEEEEECCTTSGGGHHHH
T ss_pred hhccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHH
Confidence 34678999999999999999999999999999999995 777888888877653 24799999999999999999
Q ss_pred HHHHhcccCCccEEEEccCC--CCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC---CCeEEEEcCCccccC
Q 022369 139 SEAWNGRLGPLHVLINNAGI--FSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS---PSRIINVNSVMHYVG 213 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~--~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~---~g~Iv~isS~~~~~~ 213 (298)
++++.+++|++|+||||||+ ....++.+.+.++|++.+++|+.|+++++++++|.|++++ .|+|||+||.+++.+
T Consensus 98 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~ 177 (280)
T 4da9_A 98 VDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMT 177 (280)
T ss_dssp HHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-----
T ss_pred HHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccC
Confidence 99999999999999999998 4456788999999999999999999999999999998865 789999999987766
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHH-HHHHH-hhhhc
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIV-QAAYH-LIPYF 291 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~-~~~~~-~~p~~ 291 (298)
. +....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+...+.. +.... ..|++
T Consensus 178 ~---------------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~ 241 (280)
T 4da9_A 178 S---------------PERLDYCMSKAGLAAFSQGLALRL-AETGIAVFEVRPGIIRSDMTAAVSGKYDGLIESGLVPMR 241 (280)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCC----------------------
T ss_pred C---------------CCccHHHHHHHHHHHHHHHHHHHH-HHhCcEEEEEeecCCcCCchhhcchhHHHHHhhcCCCcC
Confidence 5 778889999999999999999999 889999999999999999987654332 22223 57777
Q ss_pred cc-CCCC
Q 022369 292 IF-NPQE 297 (298)
Q Consensus 292 ~~-~pe~ 297 (298)
++ +|||
T Consensus 242 r~~~ped 248 (280)
T 4da9_A 242 RWGEPED 248 (280)
T ss_dssp CCBCHHH
T ss_pred CcCCHHH
Confidence 77 6664
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=299.74 Aligned_cols=215 Identities=29% Similarity=0.389 Sum_probs=184.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++.+|++|+++++++++
T Consensus 17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~ 90 (273)
T 1ae1_A 17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREK------GLNVEGSVCDLLSRTERDKLMQ 90 (273)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEECCCCCHHHHHHHHH
Confidence 4578999999999999999999999999999999999999988888777653 2368899999999999999999
Q ss_pred HHhccc-CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRL-GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~-g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+.+ |++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||.+++.+.
T Consensus 91 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~----- 165 (273)
T 1ae1_A 91 TVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSAL----- 165 (273)
T ss_dssp HHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCC-----
T ss_pred HHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCC-----
Confidence 999999 99999999999987778889999999999999999999999999999998888999999999876654
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch-------HHHHHHHHhhhhcc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-------KIVQAAYHLIPYFI 292 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~-------~~~~~~~~~~p~~~ 292 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+... +..+......|+++
T Consensus 166 ----------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~~r 234 (273)
T 1ae1_A 166 ----------PSVSLYSASKGAINQMTKSLACEW-AKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGR 234 (273)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTTCS
T ss_pred ----------CCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeCCCcCchhhhhhhcccCcHHHHHHHHhcCCCCC
Confidence 777889999999999999999999 788999999999999999976431 22334445678777
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 235 ~~~p~d 240 (273)
T 1ae1_A 235 AGKPQE 240 (273)
T ss_dssp CBCHHH
T ss_pred CcCHHH
Confidence 6 6664
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-42 Score=305.74 Aligned_cols=194 Identities=21% Similarity=0.282 Sum_probs=178.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-------------CchHHHHHHHHHHHhhcCCCCCccEEEEEc
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-------------NLKAANELIQKWQEEWSGKGLPLNIEAMEL 127 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (298)
.+++||++|||||++|||+++|++|+++|++|++++| +.+++++..+++... +.++.++.+
T Consensus 7 ~~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 80 (277)
T 3tsc_A 7 GKLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAA------NRRIVAAVV 80 (277)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHT------TCCEEEEEC
T ss_pred cccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc------CCeEEEEEC
Confidence 3688999999999999999999999999999999998 677777777776553 247999999
Q ss_pred CCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEc
Q 022369 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVN 206 (298)
Q Consensus 128 D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~is 206 (298)
|++|+++++++++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++ .|+|||+|
T Consensus 81 D~~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~is 160 (277)
T 3tsc_A 81 DTRDFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILIS 160 (277)
T ss_dssp CTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 99999999999999999999999999999998888888999999999999999999999999999999876 78999999
Q ss_pred CCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 207 SVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 207 S~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
|.+++.+. +....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|+|.+.
T Consensus 161 S~~~~~~~---------------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~ 214 (277)
T 3tsc_A 161 SAAGMKMQ---------------PFMIHYTASKHAVTGLARAFAAEL-GKHSIRVNSVHPGPVNTPMGSG 214 (277)
T ss_dssp CGGGTSCC---------------SSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBSSGGGSH
T ss_pred cHhhCCCC---------------CCchhhHHHHHHHHHHHHHHHHHh-CccCeEEEEEEeCCCcCCcccc
Confidence 99876665 778889999999999999999999 8889999999999999999764
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-42 Score=304.15 Aligned_cols=194 Identities=21% Similarity=0.270 Sum_probs=177.1
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC------------chHHHHHHHHHHHhhcCCCCCccEEEEEcC
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN------------LKAANELIQKWQEEWSGKGLPLNIEAMELD 128 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 128 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+ .+++++..+++... +.++.++++|
T Consensus 24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D 97 (299)
T 3t7c_A 24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEAL------GRRIIASQVD 97 (299)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHT------TCCEEEEECC
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhc------CCceEEEECC
Confidence 46889999999999999999999999999999999987 67778777777653 2479999999
Q ss_pred CCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCC-CCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEc
Q 022369 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGE-PQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVN 206 (298)
Q Consensus 129 ~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~-~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~is 206 (298)
++|+++++++++++.+++|++|+||||||+..... +.+.+.++|++.+++|+.|+++++++++|+|.+++ .|+|||+|
T Consensus 98 v~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~is 177 (299)
T 3t7c_A 98 VRDFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTS 177 (299)
T ss_dssp TTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 99999999999999999999999999999887654 88999999999999999999999999999998765 78999999
Q ss_pred CCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 207 SVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 207 S~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
|.+++.+. +....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|+|...
T Consensus 178 S~~~~~~~---------------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~ 231 (299)
T 3t7c_A 178 SIGGLRGA---------------ENIGNYIASKHGLHGLMRTMALEL-GPRNIRVNIVCPSSVATPMLLN 231 (299)
T ss_dssp CGGGTSCC---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCBSSTTTSS
T ss_pred ChhhccCC---------------CCcchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCCccCccccc
Confidence 99877665 778899999999999999999999 8889999999999999999764
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=295.27 Aligned_cols=193 Identities=25% Similarity=0.433 Sum_probs=177.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++... +.++.++++|++|++++++++++
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~~~~~~~~~~~~ 77 (247)
T 2jah_A 4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAA------GAKVHVLELDVADRQGVDAAVAS 77 (247)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999998888887652 23788999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++ |+|||+||.++..+.
T Consensus 78 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------- 149 (247)
T 2jah_A 78 TVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVNV------- 149 (247)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTCCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcCCC-------
Confidence 999999999999999998777888999999999999999999999999999998877 999999999876654
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|++||+++.+|+++|+.|+ .++||+||+|+||+|+|+|....
T Consensus 150 --------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~ 196 (247)
T 2jah_A 150 --------RNAAVYQATKFGVNAFSETLRQEV-TERGVRVVVIEPGTTDTELRGHI 196 (247)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBSSSGGGGC
T ss_pred --------CCCcHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEECCCCCCcchhcc
Confidence 777889999999999999999999 78899999999999999997654
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-42 Score=296.89 Aligned_cols=188 Identities=21% Similarity=0.179 Sum_probs=166.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++++|++|+++++++++++.
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~ 72 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG---------NAVIGIVADLAHHEDVDVAFAAAV 72 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------GGEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---------CCceEEECCCCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999888877762 258899999999999999999999
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++ |+|||+||.++..+.
T Consensus 73 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~iv~isS~~~~~~~--------- 142 (235)
T 3l6e_A 73 EWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG-GVLANVLSSAAQVGK--------- 142 (235)
T ss_dssp HHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EEEEEECCEECCSSC---------
T ss_pred HhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEEeCHHhcCCC---------
Confidence 9999999999999998878888999999999999999999999999999998866 599999999876665
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|+|.+..
T Consensus 143 ------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~ 189 (235)
T 3l6e_A 143 ------ANESLYCASKWGMRGFLESLRAEL-KDSPLRLVNLYPSGIRSEFWDNT 189 (235)
T ss_dssp ------SSHHHHHHHHHHHHHHHHHHHHHT-TTSSEEEEEEEEEEECCCC----
T ss_pred ------CCCcHHHHHHHHHHHHHHHHHHHh-hccCCEEEEEeCCCccCcchhcc
Confidence 778889999999999999999999 88999999999999999997654
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=300.93 Aligned_cols=195 Identities=24% Similarity=0.295 Sum_probs=173.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+..+.. .++.++++|++|++++++++++
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~ 80 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHV---QEPIVLPLDITDCTKADTEIKD 80 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTS---CCCEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcccc---CcceEEeccCCCHHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999887753221 3788999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+....++ +.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||.++..+.
T Consensus 81 ~~~~~g~iD~lvnnAg~~~~~~~-~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 152 (250)
T 3nyw_A 81 IHQKYGAVDILVNAAAMFMDGSL-SEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGF------- 152 (250)
T ss_dssp HHHHHCCEEEEEECCCCCCCCCC-SCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC--------------
T ss_pred HHHhcCCCCEEEECCCcCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCCC-------
Confidence 99999999999999999877777 7899999999999999999999999999999889999999999876644
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|+|.+.
T Consensus 153 --------~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~ 198 (250)
T 3nyw_A 153 --------ADGGIYGSTKFALLGLAESLYREL-APLGIRVTTLCPGWVNTDMAKK 198 (250)
T ss_dssp --------CCTTHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCSHHHHH
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccCchhhh
Confidence 457889999999999999999999 8889999999999999998653
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-42 Score=296.92 Aligned_cols=213 Identities=26% Similarity=0.388 Sum_probs=187.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++|++|||||++|||+++|++|+++|++|++++| +.++++++.+++.+. +.++.++++|++|++++++++++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 75 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKL------GSDAIAVRADVANAEDVTNMVKQ 75 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999 888888887777653 23688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||.++..+.
T Consensus 76 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 148 (246)
T 2uvd_A 76 TVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGN------- 148 (246)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCC-------
Confidence 9999999999999999987777889999999999999999999999999999998888999999999876654
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH-HHHHHHHhhhhccc-CCCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK-IVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~-~~~~~~~~~p~~~~-~pe~ 297 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+++|++.+...+ ..+.+....|++++ +|||
T Consensus 149 --------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~d 217 (246)
T 2uvd_A 149 --------PGQANYVAAKAGVIGLTKTSAKEL-ASRNITVNAIAPGFIATDMTDVLDENIKAEMLKLIPAAQFGEAQD 217 (246)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBGGGCSSCCCTTHHHHHHHTCTTCSCBCHHH
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeccccCcchhhcCHHHHHHHHhcCCCCCCcCHHH
Confidence 677889999999999999999999 7889999999999999999876532 23334456677666 6654
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-42 Score=299.88 Aligned_cols=216 Identities=24% Similarity=0.324 Sum_probs=186.5
Q ss_pred CCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC-chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 58 LPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN-LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 58 ~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
....+++||++|||||++|||+++|++|+++|++|++++++ .+.++++.+++.+. +.++.++++|++|+++++
T Consensus 11 ~~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~ 84 (270)
T 3is3_A 11 YIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKAL------GSDAIAIKADIRQVPEIV 84 (270)
T ss_dssp CCTTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHH
T ss_pred cCCCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHH
Confidence 34557899999999999999999999999999999998764 56677777777653 247899999999999999
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcc-ccCCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMH-YVGFV 215 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~-~~~~~ 215 (298)
++++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++ +|+|||+||..+ ..+
T Consensus 85 ~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~-- 160 (270)
T 3is3_A 85 KLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTE--GGRIVLTSSNTSKDFS-- 160 (270)
T ss_dssp HHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT--TCEEEEECCTTTTTCC--
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc--CCeEEEEeCchhccCC--
Confidence 999999999999999999999988888899999999999999999999999999999976 689999999862 333
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-------------hHHHH
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-------------PKIVQ 282 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-------------~~~~~ 282 (298)
.++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+.. .+..+
T Consensus 161 -------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 226 (270)
T 3is3_A 161 -------------VPKHSLYSGSKGAVDSFVRIFSKDC-GDKKITVNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQ 226 (270)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSTTHHHHGGGGSTTGGGSCHHHHHH
T ss_pred -------------CCCCchhHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCCccChhhhhhhhhccccccccchHHHHH
Confidence 3778889999999999999999999 88899999999999999997521 22333
Q ss_pred HHHHhhhhccc-CCCC
Q 022369 283 AAYHLIPYFIF-NPQE 297 (298)
Q Consensus 283 ~~~~~~p~~~~-~pe~ 297 (298)
......|++++ +|||
T Consensus 227 ~~~~~~p~~r~~~p~d 242 (270)
T 3is3_A 227 MAAHASPLHRNGWPQD 242 (270)
T ss_dssp HHHHHSTTCSCBCHHH
T ss_pred HHHhcCCCCCCCCHHH
Confidence 44557788887 6664
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=300.13 Aligned_cols=214 Identities=23% Similarity=0.319 Sum_probs=189.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++++|++|++++++++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 77 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK------GVEARSYVCDVTSEEAVIGTVDS 77 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------TSCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHH
Confidence 577899999999999999999999999999999999999888887777542 24788999999999999999999
Q ss_pred HhcccCCccEEEEccCCC-CCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIF-SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+++|++|+||||||+. ...++.+.+.++|++.+++|+.++++++++++|.|++++.|+|||+||..++.+.
T Consensus 78 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 151 (262)
T 1zem_A 78 VVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGP------ 151 (262)
T ss_dssp HHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCC------
T ss_pred HHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC------
Confidence 999999999999999987 5667888999999999999999999999999999998888999999998876654
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc----------------hH-HHHH
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL----------------PK-IVQA 283 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~----------------~~-~~~~ 283 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|+|.+.. ++ ..+.
T Consensus 152 ---------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (262)
T 1zem_A 152 ---------PNMAAYGTSKGAIIALTETAALDL-APYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQQ 221 (262)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHHH
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHHH-HhhCeEEEEEecCCcCcchhhhhccchhhhccccccccCHHHHHHH
Confidence 677889999999999999999999 78899999999999999986542 12 2333
Q ss_pred HHHhhhhccc-CCCC
Q 022369 284 AYHLIPYFIF-NPQE 297 (298)
Q Consensus 284 ~~~~~p~~~~-~pe~ 297 (298)
+....|++++ +|||
T Consensus 222 ~~~~~p~~r~~~p~d 236 (262)
T 1zem_A 222 MIGSVPMRRYGDINE 236 (262)
T ss_dssp HHHTSTTSSCBCGGG
T ss_pred HHhcCCCCCCcCHHH
Confidence 4456788888 8876
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-42 Score=299.61 Aligned_cols=214 Identities=26% Similarity=0.305 Sum_probs=188.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC-chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN-LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.+++||++|||||++|||+++|++|+++|++|++++++ .++++++.+++.+. +.++.++++|++|++++++++
T Consensus 27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~ 100 (271)
T 3v2g_A 27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQA------GGRAVAIRADNRDAEAIEQAI 100 (271)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHH
Confidence 46889999999999999999999999999999999765 46677777777653 247899999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++ .|+||++||..+..+
T Consensus 101 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~--~g~iv~isS~~~~~~------ 172 (271)
T 3v2g_A 101 RETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGD--GGRIITIGSNLAELV------ 172 (271)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCT--TCEEEEECCGGGTCC------
T ss_pred HHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhc--CCEEEEEeChhhccC------
Confidence 999999999999999999988888999999999999999999999999999999965 689999999765433
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHHhhhhccc-CCCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~~~-~pe~ 297 (298)
+.++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++....++..+......|++++ +|||
T Consensus 173 --------~~~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~r~~~ped 242 (271)
T 3v2g_A 173 --------PWPGISLYSASKAALAGLTKGLARDL-GPRGITVNIVHPGSTDTDMNPADGDHAEAQRERIATGSYGEPQD 242 (271)
T ss_dssp --------CSTTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSSSSCSSCSSHHHHHHTCTTSSCBCHHH
T ss_pred --------CCCCchHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEecCCCcCCcccccchhHHHHHhcCCCCCCCCHHH
Confidence 23778899999999999999999999 888999999999999999987665555666678888887 7764
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-42 Score=301.29 Aligned_cols=208 Identities=20% Similarity=0.273 Sum_probs=181.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++.+|++|||||++|||+++|++|+++|++|++++|+.+++++.. ...+.++++|++|++++++++++
T Consensus 13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~------------~~~~~~~~~Dv~d~~~v~~~~~~ 80 (266)
T 3p19_A 13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALN------------LPNTLCAQVDVTDKYTFDTAITR 80 (266)
T ss_dssp --CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTC------------CTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhh------------cCCceEEEecCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999977665431 12688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+.+|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||.+++.+.
T Consensus 81 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~------- 153 (266)
T 3p19_A 81 AEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTF------- 153 (266)
T ss_dssp HHHHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC-------
T ss_pred HHHHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCC-------
Confidence 9999999999999999988888999999999999999999999999999999999889999999999876655
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch-HH-HHHHHH-hhhhccc-CCCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KI-VQAAYH-LIPYFIF-NPQE 297 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~-~~-~~~~~~-~~p~~~~-~pe~ 297 (298)
+....|++||+++.+|+++|+.|+ .++||+||+|+||+|+|++.+... +. .+.... ..|++++ +|||
T Consensus 154 --------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~r~~~ped 224 (266)
T 3p19_A 154 --------PDHAAYCGTKFAVHAISENVREEV-AASNVRVMTIAPSAVKTELLSHTTSQQIKDGYDAWRVDMGGVLAADD 224 (266)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBSSSGGGGCSCHHHHHHHHHHHHHTTCCBCHHH
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEeeCccccchhhcccchhhhHHHHhhcccccCCCCHHH
Confidence 778899999999999999999999 888999999999999999987653 22 222222 4577766 6654
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-41 Score=297.58 Aligned_cols=194 Identities=24% Similarity=0.317 Sum_probs=173.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH-HHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA-ANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++|++|||||++|||+++|++|+++|++|++++|+.++ ++++.+++.+... .++.++.+|++|++++++++++
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~ 76 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG-----VKVLYDGADLSKGEAVRGLVDN 76 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHT-----SCEEEECCCTTSHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccC-----CcEEEEECCCCCHHHHHHHHHH
Confidence 568999999999999999999999999999999999988 8888777765321 3688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..++.+.
T Consensus 77 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 149 (260)
T 1x1t_A 77 AVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVAS------- 149 (260)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCC-------
Confidence 9999999999999999987778888999999999999999999999999999998888999999999876654
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
++...|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+..
T Consensus 150 --------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~ 196 (260)
T 1x1t_A 150 --------ANKSAYVAAKHGVVGFTKVTALET-AGQGITANAICPGWVRTPLVEKQ 196 (260)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCC------
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHh-ccCCEEEEEEeecCccCchHHHh
Confidence 677889999999999999999999 88899999999999999997653
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=302.04 Aligned_cols=215 Identities=21% Similarity=0.231 Sum_probs=185.0
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEE-cCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHH-----
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAV-RNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLD----- 133 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~----- 133 (298)
+.++++|++|||||++|||+++|++|+++|++|++++ |+.++++++.+++.+.. +.++.++++|++|++
T Consensus 4 m~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dl~~~~~~~~~ 78 (291)
T 1e7w_A 4 MTAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-----PNSAITVQADLSNVATAPVS 78 (291)
T ss_dssp ----CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-----TTCEEEEECCCSSSCBCCCC
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhc-----CCeeEEEEeecCCccccccc
Confidence 3467899999999999999999999999999999999 99999998888876322 237899999999999
Q ss_pred ------------HHHHHHHHHhcccCCccEEEEccCCCCCCCCCccC--------------hhhHHHHHhhhchHHHHHH
Q 022369 134 ------------SVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFS--------------KDGYEEHMQVNHLAPALLS 187 (298)
Q Consensus 134 ------------~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~--------------~~~~~~~~~vN~~~~~~l~ 187 (298)
+++++++++.+++|++|+||||||+....++.+.+ .++|++.+++|+.++++++
T Consensus 79 ~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~ 158 (291)
T 1e7w_A 79 GADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLI 158 (291)
T ss_dssp ----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHH
Confidence 99999999999999999999999998777788888 9999999999999999999
Q ss_pred HHHhhhhhcCC------CCeEEEEcCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEE
Q 022369 188 ILLFPSLIRGS------PSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINV 261 (298)
Q Consensus 188 ~~~lp~m~~~~------~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v 261 (298)
++++|+|++++ .|+|||+||..++.+. ++...|++||+++.+|+++|+.|+ .++||+|
T Consensus 159 ~~~~~~m~~~~~~~~~~~g~Iv~isS~~~~~~~---------------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~v 222 (291)
T 1e7w_A 159 KAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL---------------LGYTIYTMAKGALEGLTRSAALEL-APLQIRV 222 (291)
T ss_dssp HHHHHHHHTSCGGGSCSCEEEEEECCTTTTSCC---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEE
T ss_pred HHHHHHHHhcCCCCCCCCcEEEEEechhhcCCC---------------CCCchhHHHHHHHHHHHHHHHHHH-HhcCeEE
Confidence 99999999877 7999999999876654 778899999999999999999999 7889999
Q ss_pred EEeeCCccccCccCCch-HHHHHHHHhhhhc-cc-CCCC
Q 022369 262 VCVSPGIVSTNVARDLP-KIVQAAYHLIPYF-IF-NPQE 297 (298)
Q Consensus 262 ~~v~Pg~v~T~~~~~~~-~~~~~~~~~~p~~-~~-~pe~ 297 (298)
|+|+||+|+|+| + .+ +..+.+....|++ ++ +|||
T Consensus 223 n~v~PG~v~T~~-~-~~~~~~~~~~~~~p~~~r~~~ped 259 (291)
T 1e7w_A 223 NGVGPGLSVLVD-D-MPPAVWEGHRSKVPLYQRDSSAAE 259 (291)
T ss_dssp EEEEESSBCCGG-G-SCHHHHHHHHTTCTTTTSCBCHHH
T ss_pred EEEeeCCccCCc-c-CCHHHHHHHHhhCCCCCCCCCHHH
Confidence 999999999999 5 43 3334444567876 66 7764
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-42 Score=300.57 Aligned_cols=212 Identities=25% Similarity=0.266 Sum_probs=178.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEE-EcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++||++|||||++|||+++|++|+++|++|+++ .|+.+.++++.+++... +.++.++++|++|+++++++++
T Consensus 24 ~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~v~~~~~ 97 (267)
T 3u5t_A 24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAA------GGKALTAQADVSDPAAVRRLFA 97 (267)
T ss_dssp ---CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCeEEEEEcCCCCHHHHHHHHH
Confidence 4578999999999999999999999999999998 55667777777777653 2478999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++ +|+|||+||..+..+.
T Consensus 98 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~------ 169 (267)
T 3u5t_A 98 TAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRV--GGRIINMSTSQVGLLH------ 169 (267)
T ss_dssp HHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEEEEEECCTHHHHCC------
T ss_pred HHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh--CCeEEEEeChhhccCC------
Confidence 99999999999999999988888899999999999999999999999999999976 4899999998866554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc--hHHHHHHHHhhhhccc-CCCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~--~~~~~~~~~~~p~~~~-~pe~ 297 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.... .+..+.+....|++++ +|||
T Consensus 170 ---------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~ped 239 (267)
T 3u5t_A 170 ---------PSYGIYAAAKAGVEAMTHVLSKEL-RGRDITVNAVAPGPTATDLFLEGKSDEVRDRFAKLAPLERLGTPQD 239 (267)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHT-TTSCCEEEEEEECCBC-----------CHHHHHTSSTTCSCBCHHH
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHh-hhhCCEEEEEEECCCcCccccccCCHHHHHHHHhcCCCCCCcCHHH
Confidence 778899999999999999999999 88999999999999999997642 2223445557788777 7664
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-42 Score=297.32 Aligned_cols=219 Identities=23% Similarity=0.305 Sum_probs=189.6
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEE-cCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHH
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAV-RNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSV 135 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v 135 (298)
+.+..+.++|++|||||++|||+++|++|+++|++|++++ |+.++.++..+++.+. +.++.++.+|++|++++
T Consensus 5 ~~~~~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v 78 (256)
T 3ezl_A 5 HHHHMVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKAL------GFDFYASEGNVGDWDST 78 (256)
T ss_dssp --------CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHT------TCCCEEEECCTTCHHHH
T ss_pred CCCCCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc------CCeeEEEecCCCCHHHH
Confidence 3445677899999999999999999999999999999988 7777777777776653 24789999999999999
Q ss_pred HHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 136 VRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 136 ~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+||++||.++..+.
T Consensus 79 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~- 157 (256)
T 3ezl_A 79 KQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQ- 157 (256)
T ss_dssp HHHHHHHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGSC-
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccCC-
Confidence 9999999999999999999999988888899999999999999999999999999999999888999999999877665
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch-HHHHHHHHhhhhccc-
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIPYFIF- 293 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~-~~~~~~~~~~p~~~~- 293 (298)
++...|++||+|+.+|+++++.|+ .++||+|++|+||+|+|++.+... +..+......|.+++
T Consensus 158 --------------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 222 (256)
T 3ezl_A 158 --------------FGQTNYSTAKAGIHGFTMSLAQEV-ATKGVTVNTVSPGYIGTDMVKAIRPDVLEKIVATIPVRRLG 222 (256)
T ss_dssp --------------SCCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHHSTTSSCB
T ss_pred --------------CCCcccHHHHHHHHHHHHHHHHHH-HHhCCEEEEEEECcccCccccccCHHHHHHHHhcCCCCCCc
Confidence 778899999999999999999999 788999999999999999987754 445556667788777
Q ss_pred CCCC
Q 022369 294 NPQE 297 (298)
Q Consensus 294 ~pe~ 297 (298)
+|||
T Consensus 223 ~~~d 226 (256)
T 3ezl_A 223 SPDE 226 (256)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6654
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-42 Score=301.79 Aligned_cols=215 Identities=13% Similarity=0.172 Sum_probs=176.8
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC---chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN---LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSV 135 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v 135 (298)
...+++||++|||||++|||+++|++|+++|++|++++|+ .++++++.+++... +.++.++++|++|++++
T Consensus 5 ~~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v 78 (262)
T 3ksu_A 5 KYHDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQ------GAKVALYQSDLSNEEEV 78 (262)
T ss_dssp CCSCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTT------TCEEEEEECCCCSHHHH
T ss_pred cccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHH
Confidence 3457899999999999999999999999999999998764 45666666666542 24899999999999999
Q ss_pred HHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 136 VRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 136 ~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|. +.|+|||+||.++..+.
T Consensus 79 ~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~--~~g~iv~isS~~~~~~~- 155 (262)
T 3ksu_A 79 AKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMN--PNGHIITIATSLLAAYT- 155 (262)
T ss_dssp HHHHHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEE--EEEEEEEECCCHHHHHH-
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhc--CCCEEEEEechhhccCC-
Confidence 999999999999999999999998888889999999999999999999999999999994 36899999999876654
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc--hHHHHHHHHhhhhccc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIPYFIF 293 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~--~~~~~~~~~~~p~~~~ 293 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.... .+..+......|.+++
T Consensus 156 --------------~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~r~ 220 (262)
T 3ksu_A 156 --------------GFYSTYAGNKAPVEHYTRAASKEL-MKQQISVNAIAPGPMDTSFFYGQETKESTAFHKSQAMGNQL 220 (262)
T ss_dssp --------------CCCCC-----CHHHHHHHHHHHHT-TTTTCEEEEEEECCCCTHHHHTCC------------CCCCS
T ss_pred --------------CCCchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEeeCCCcCccccccCchHHHHHHHhcCcccCC
Confidence 677889999999999999999999 88899999999999999997653 2223334456788777
Q ss_pred -CCCC
Q 022369 294 -NPQE 297 (298)
Q Consensus 294 -~pe~ 297 (298)
+|||
T Consensus 221 ~~ped 225 (262)
T 3ksu_A 221 TKIED 225 (262)
T ss_dssp CCGGG
T ss_pred CCHHH
Confidence 7776
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=299.17 Aligned_cols=195 Identities=21% Similarity=0.252 Sum_probs=178.5
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-------------CchHHHHHHHHHHHhhcCCCCCccEEEEE
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-------------NLKAANELIQKWQEEWSGKGLPLNIEAME 126 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (298)
+.+++||++|||||++|||+++|++|+++|++|++++| +.++++++.+++... +.++.+++
T Consensus 10 ~~~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 83 (280)
T 3pgx_A 10 AGSLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQ------GRKALTRV 83 (280)
T ss_dssp -CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTT------TCCEEEEE
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhc------CCeEEEEE
Confidence 45788999999999999999999999999999999998 677788777776542 24789999
Q ss_pred cCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEE
Q 022369 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINV 205 (298)
Q Consensus 127 ~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~i 205 (298)
+|++|+++++++++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++ .|+|||+
T Consensus 84 ~Dv~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~i 163 (280)
T 3pgx_A 84 LDVRDDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVV 163 (280)
T ss_dssp CCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 999999999999999999999999999999998888889999999999999999999999999999998875 7999999
Q ss_pred cCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 206 NSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 206 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
||.+++.+. +....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+.
T Consensus 164 sS~~~~~~~---------------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~ 218 (280)
T 3pgx_A 164 SSSAGLKAT---------------PGNGHYSASKHGLTALTNTLAIEL-GEYGIRVNSIHPYSVETPMIEP 218 (280)
T ss_dssp CCGGGTSCC---------------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSTTCCH
T ss_pred cchhhccCC---------------CCchhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcccCcccch
Confidence 999876665 778899999999999999999999 8889999999999999999764
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-41 Score=297.81 Aligned_cols=192 Identities=24% Similarity=0.337 Sum_probs=175.3
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+..+. ..+..+.+|++++++++++++
T Consensus 6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~----~~~~~~~~D~~~~~~~~~~~~ 81 (267)
T 3t4x_A 6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPD----AILQPVVADLGTEQGCQDVIE 81 (267)
T ss_dssp CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTT----CEEEEEECCTTSHHHHHHHHH
T ss_pred cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCC----ceEEEEecCCCCHHHHHHHHH
Confidence 3678999999999999999999999999999999999999999999998775432 478899999999999887765
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..++.+.
T Consensus 82 ----~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 151 (267)
T 3t4x_A 82 ----KYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPS------ 151 (267)
T ss_dssp ----HCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCC------
T ss_pred ----hcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCC------
Confidence 4689999999999988888899999999999999999999999999999999888999999999877665
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+.
T Consensus 152 ---------~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~ 197 (267)
T 3t4x_A 152 ---------QEMAHYSATKTMQLSLSRSLAELT-TGTNVTVNTIMPGSTLTEGVET 197 (267)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEEEEECCBCCHHHHH
T ss_pred ---------CcchHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeCCeecCccHHH
Confidence 778899999999999999999999 8899999999999999997543
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-42 Score=298.42 Aligned_cols=213 Identities=22% Similarity=0.274 Sum_probs=172.2
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEE-EcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+.+++||++|||||++|||+++|++|+++|++|+++ +|+.+.+++..+++.+. +.++.++++|++|+++++++
T Consensus 3 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~ 76 (259)
T 3edm_A 3 LQRFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKL------GRSALAIKADLTNAAEVEAA 76 (259)
T ss_dssp -CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTT------TSCCEEEECCTTCHHHHHHH
T ss_pred ccCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCceEEEEcCCCCHHHHHHH
Confidence 356889999999999999999999999999999998 66777778777777542 24788999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCC-CCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccc-cCCCC
Q 022369 139 SEAWNGRLGPLHVLINNAGIF-SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY-VGFVD 216 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~-~~~~~ 216 (298)
++++.+++|++|+||||||+. ...++.+.+.++|++.+++|+.|+++++++++|+|++ .|+|||+||.+++ .+.
T Consensus 77 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~~-- 152 (259)
T 3edm_A 77 ISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAK--GGAIVTFSSQAGRDGGG-- 152 (259)
T ss_dssp HHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEECCHHHHHCCS--
T ss_pred HHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCEEEEEcCHHhccCCC--
Confidence 999999999999999999987 5677889999999999999999999999999999977 6899999998766 333
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc--hHHHHHHHHhhhhccc-
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIPYFIF- 293 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~--~~~~~~~~~~~p~~~~- 293 (298)
++...|++||+|+.+|+++++.|+ .+. |+||+|+||+|+|+|.+.. ++..+......|++++
T Consensus 153 -------------~~~~~Y~asKaa~~~l~~~la~e~-~~~-I~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~ 217 (259)
T 3edm_A 153 -------------PGALAYATSKGAVMTFTRGLAKEV-GPK-IRVNAVCPGMISTTFHDTFTKPEVRERVAGATSLKREG 217 (259)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHH-TTT-CEEEEEEECCBCC----------------------CCB
T ss_pred -------------CCcHHHHHHHHHHHHHHHHHHHHH-CCC-CEEEEEEECCCcCcccccccChHHHHHHHhcCCCCCCc
Confidence 777889999999999999999999 665 9999999999999998765 3334445557787777
Q ss_pred CCCC
Q 022369 294 NPQE 297 (298)
Q Consensus 294 ~pe~ 297 (298)
+|||
T Consensus 218 ~ped 221 (259)
T 3edm_A 218 SSED 221 (259)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6664
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-41 Score=291.98 Aligned_cols=205 Identities=20% Similarity=0.260 Sum_probs=180.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
||++|||||++|||+++|++|+++| ++|++++|+.++++++.+++. .++.++++|++|+++++++++++
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~ 72 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYG---------DRFFYVVGDITEDSVLKQLVNAA 72 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHG---------GGEEEEESCTTSHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhC---------CceEEEECCCCCHHHHHHHHHHH
Confidence 6899999999999999999999985 799999999998888776652 37899999999999999999999
Q ss_pred hcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 143 NGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.|+++++++++|+|++++ |+|||+||..++.+.
T Consensus 73 ~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~~~------- 144 (254)
T 3kzv_A 73 VKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNMYF------- 144 (254)
T ss_dssp HHHHSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCCSS-------
T ss_pred HHhcCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhccCC-------
Confidence 999999999999999864 47788999999999999999999999999999998866 999999999876655
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc----------hHHHHHHHHhhhhc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL----------PKIVQAAYHLIPYF 291 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~----------~~~~~~~~~~~p~~ 291 (298)
++...|++||+|+.+|+++|+.|+ .||+||+|+||+|+|+|.+.. ++..+.+....|++
T Consensus 145 --------~~~~~Y~asK~a~~~~~~~la~e~---~~i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (254)
T 3kzv_A 145 --------SSWGAYGSSKAALNHFAMTLANEE---RQVKAIAVAPGIVDTDMQVNIRENVGPSSMSAEQLKMFRGLKENN 213 (254)
T ss_dssp --------CCSHHHHHHHHHHHHHHHHHHHHC---TTSEEEEEECSSCCCCCSCCCCCCCCTTTSCHHHHHHHHHHHTTC
T ss_pred --------CCcchHHHHHHHHHHHHHHHHhhc---cCcEEEEEeCCcccchhHHHhhcccCccccCHHHHHHHHHHHhcC
Confidence 778899999999999999999998 489999999999999998654 34445566678888
Q ss_pred cc-CCCC
Q 022369 292 IF-NPQE 297 (298)
Q Consensus 292 ~~-~pe~ 297 (298)
++ +|||
T Consensus 214 r~~~p~d 220 (254)
T 3kzv_A 214 QLLDSSV 220 (254)
T ss_dssp ----CHH
T ss_pred CcCCccc
Confidence 87 7765
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-41 Score=296.27 Aligned_cols=211 Identities=17% Similarity=0.211 Sum_probs=169.1
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
.....++++|++|||||++|||+++|++|+++|++|++++|+.+++.+..++. .+.++.+|++|+++++
T Consensus 19 ~~~~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------~~~~~~~Dv~~~~~v~ 87 (260)
T 3gem_A 19 FQGHMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQA-----------GAVALYGDFSCETGIM 87 (260)
T ss_dssp --------CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHH-----------TCEEEECCTTSHHHHH
T ss_pred cccCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhc-----------CCeEEECCCCCHHHHH
Confidence 34456788999999999999999999999999999999999988764433321 3678999999999999
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
++++++.+++|++|+||||||+....+ .+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..++.+.
T Consensus 88 ~~~~~~~~~~g~iD~lv~nAg~~~~~~-~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~-- 164 (260)
T 3gem_A 88 AFIDLLKTQTSSLRAVVHNASEWLAET-PGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGS-- 164 (260)
T ss_dssp HHHHHHHHHCSCCSEEEECCCCCCCCC-TTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCC--
T ss_pred HHHHHHHHhcCCCCEEEECCCccCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCC--
Confidence 999999999999999999999876555 56788999999999999999999999999999888999999999876655
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHHhhhhccc-CC
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~~~-~p 295 (298)
++...|++||+|+.+|+++|+.|+ .+ +|+||+|+||+|+|++... .+..+......|+.++ +|
T Consensus 165 -------------~~~~~Y~asKaa~~~l~~~la~e~-~~-~Irvn~v~PG~v~t~~~~~-~~~~~~~~~~~p~~r~~~~ 228 (260)
T 3gem_A 165 -------------SKHIAYCATKAGLESLTLSFAARF-AP-LVKVNGIAPALLMFQPKDD-AAYRANALAKSALGIEPGA 228 (260)
T ss_dssp -------------SSCHHHHHHHHHHHHHHHHHHHHH-TT-TCEEEEEEECTTCC----------------CCSCCCCCT
T ss_pred -------------CCcHhHHHHHHHHHHHHHHHHHHH-CC-CCEEEEEeecccccCCCCC-HHHHHHHHhcCCCCCCCCH
Confidence 778899999999999999999999 66 6999999999999998652 3334445567787777 66
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 229 ed 230 (260)
T 3gem_A 229 EV 230 (260)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=294.68 Aligned_cols=215 Identities=27% Similarity=0.369 Sum_probs=187.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++++|++|+++++++++
T Consensus 5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~ 78 (260)
T 2ae2_A 5 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK------GFKVEASVCDLSSRSERQELMN 78 (260)
T ss_dssp TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHH
Confidence 3578999999999999999999999999999999999999988888777653 2378899999999999999999
Q ss_pred HHhccc-CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRL-GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~-g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+++ |++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..++.+.
T Consensus 79 ~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 153 (260)
T 2ae2_A 79 TVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAV----- 153 (260)
T ss_dssp HHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCC-----
T ss_pred HHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCC-----
Confidence 999999 89999999999987777889999999999999999999999999999998888999999998866554
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHH---HHHHhhhhccc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQ---AAYHLIPYFIF 293 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~---~~~~~~p~~~~ 293 (298)
+....|++||+++++|+++++.|+ .++||+||+|+||+++|++.+.. ++..+ ......|++++
T Consensus 154 ----------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (260)
T 2ae2_A 154 ----------PYEAVYGATKGAMDQLTRCLAFEW-AKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRM 222 (260)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTCSC
T ss_pred ----------CCcchHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCCCCCcchhhhccChhhHHHHHHHHhcCCCCCC
Confidence 677889999999999999999999 78899999999999999986532 11112 33445677766
Q ss_pred -CCCC
Q 022369 294 -NPQE 297 (298)
Q Consensus 294 -~pe~ 297 (298)
+|||
T Consensus 223 ~~~~d 227 (260)
T 2ae2_A 223 GEPKE 227 (260)
T ss_dssp BCHHH
T ss_pred CCHHH
Confidence 6654
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-41 Score=298.71 Aligned_cols=213 Identities=13% Similarity=0.069 Sum_probs=185.1
Q ss_pred CCCCCCCEEEEeCCCC--chHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTS--GIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 60 ~~~~~~k~vlITGas~--GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
..+++||++|||||++ |||+++|++|+++|++|++++|+.+..+.+.+...+. ..+.++++|++|++++++
T Consensus 25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dv~d~~~v~~ 97 (296)
T 3k31_A 25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESL-------GVKLTVPCDVSDAESVDN 97 (296)
T ss_dssp CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHH-------TCCEEEECCTTCHHHHHH
T ss_pred hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHH
Confidence 4568899999999997 9999999999999999999999976655554443332 146889999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCCC----CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSI----GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~ 213 (298)
+++++.+++|++|+||||||+... .++.+.+.++|++.+++|+.++++++++++|+|++ .|+|||+||..+..+
T Consensus 98 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~--~g~IV~isS~~~~~~ 175 (296)
T 3k31_A 98 MFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTN--GGSILTLSYYGAEKV 175 (296)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT--CEEEEEEECGGGTSC
T ss_pred HHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCEEEEEEehhhccC
Confidence 999999999999999999999764 67889999999999999999999999999999976 689999999987665
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH---HHHHHHHhhhh
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK---IVQAAYHLIPY 290 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~---~~~~~~~~~p~ 290 (298)
. +....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+.... ..+......|+
T Consensus 176 ~---------------~~~~~Y~asKaal~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~ 239 (296)
T 3k31_A 176 V---------------PHYNVMGVCKAALEASVKYLAVDL-GKQQIRVNAISAGPVRTLASSGISDFHYILTWNKYNSPL 239 (296)
T ss_dssp C---------------TTTTHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECCCCCSSCCSCHHHHHHHHHHHHHSTT
T ss_pred C---------------CCchhhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEECCCcCchhhcccchHHHHHHHHhcCCC
Confidence 4 778889999999999999999999 8889999999999999999887643 23445557788
Q ss_pred ccc-CCCC
Q 022369 291 FIF-NPQE 297 (298)
Q Consensus 291 ~~~-~pe~ 297 (298)
+++ +|||
T Consensus 240 ~r~~~ped 247 (296)
T 3k31_A 240 RRNTTLDD 247 (296)
T ss_dssp SSCCCHHH
T ss_pred CCCCCHHH
Confidence 887 7764
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-41 Score=295.17 Aligned_cols=217 Identities=19% Similarity=0.194 Sum_probs=183.6
Q ss_pred CCCCCCCEEEEeCCC-CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 60 LPPVNDLTCIVTGST-SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 60 ~~~~~~k~vlITGas-~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
..++++|++|||||+ +|||+++|++|+++|++|++++|+.+++++..+++.+.. +.++.++++|++|+++++++
T Consensus 17 ~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dl~~~~~v~~~ 91 (266)
T 3o38_A 17 HGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLG-----LGRVEAVVCDVTSTEAVDAL 91 (266)
T ss_dssp CSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTC-----SSCEEEEECCTTCHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-----CCceEEEEeCCCCHHHHHHH
Confidence 456889999999997 699999999999999999999999999999888885532 24799999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCccccCCCCc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~~~~~~~~~ 217 (298)
++++.+++|++|+||||||+....++.+.+.++|++.+++|+.++++++++++|+|+++ +.|+||++||..++.+.
T Consensus 92 ~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~--- 168 (266)
T 3o38_A 92 ITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQ--- 168 (266)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCC---
T ss_pred HHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCC---
Confidence 99999999999999999999888888899999999999999999999999999999987 67899999999876654
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch--HHHHHHHHhhhhccc-C
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP--KIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~--~~~~~~~~~~p~~~~-~ 294 (298)
++...|++||+|+++|+++|+.|+ .++||+||+|+||+|+|++.+... +..+.+....|++++ +
T Consensus 169 ------------~~~~~Y~~sKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~r~~~ 235 (266)
T 3o38_A 169 ------------HSQSHYAAAKAGVMALTRCSAIEA-VEFGVRINAVSPSIARHKFLEKTSSSELLDRLASDEAFGRAAE 235 (266)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCC-----------------CCTTSSCCC
T ss_pred ------------CCCchHHHHHHHHHHHHHHHHHHH-HHcCcEEEEEeCCcccchhhhccCcHHHHHHHHhcCCcCCCCC
Confidence 778899999999999999999999 788999999999999999987642 233444456677666 6
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 236 ~~d 238 (266)
T 3o38_A 236 PWE 238 (266)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-42 Score=299.60 Aligned_cols=209 Identities=23% Similarity=0.287 Sum_probs=180.3
Q ss_pred CCCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHH
Q 022369 56 NPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSV 135 (298)
Q Consensus 56 ~~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v 135 (298)
.+.+..+++||++|||||++|||+++|++|+++|++|++++|+.+... ..+..+++|++|++++
T Consensus 5 ~~~~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~----------------~~~~~~~~Dv~~~~~v 68 (269)
T 3vtz_A 5 HHHHMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSDV----------------NVSDHFKIDVTNEEEV 68 (269)
T ss_dssp -----CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--CT----------------TSSEEEECCTTCHHHH
T ss_pred ccccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhcc----------------CceeEEEecCCCHHHH
Confidence 345567889999999999999999999999999999999999976431 1467789999999999
Q ss_pred HHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 136 VRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 136 ~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++++++.+.+|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..++.+.
T Consensus 69 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~- 147 (269)
T 3vtz_A 69 KEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAAT- 147 (269)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCC-
Confidence 9999999999999999999999988888899999999999999999999999999999999889999999999876665
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------------hHHHHH
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------------PKIVQA 283 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------------~~~~~~ 283 (298)
+....|++||+|+++|+++|+.|+ .+ ||+||+|+||+|+|+|.... .+..+.
T Consensus 148 --------------~~~~~Y~asKaa~~~l~~~la~e~-~~-~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 211 (269)
T 3vtz_A 148 --------------KNAAAYVTSKHALLGLTRSVAIDY-AP-KIRCNAVCPGTIMTPMVIKAAKMEVGEDENAVERKIEE 211 (269)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHHHHH-TT-TEEEEEEEECSBCCHHHHHHHHHHHCCSTTHHHHHHHH
T ss_pred --------------CCChhHHHHHHHHHHHHHHHHHHh-cC-CCEEEEEEECCCcCcchhhhhhccccccchhhHHHHHH
Confidence 778899999999999999999999 66 89999999999999986432 233444
Q ss_pred HHHhhhhccc-CCCC
Q 022369 284 AYHLIPYFIF-NPQE 297 (298)
Q Consensus 284 ~~~~~p~~~~-~pe~ 297 (298)
+....|++++ +|||
T Consensus 212 ~~~~~p~~r~~~ped 226 (269)
T 3vtz_A 212 WGRQHPMGRIGRPEE 226 (269)
T ss_dssp HHHHSTTSSCBCHHH
T ss_pred HHhcCCCCCCcCHHH
Confidence 5557788777 6664
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-41 Score=296.20 Aligned_cols=211 Identities=24% Similarity=0.275 Sum_probs=184.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH--HHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA--ANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+|++|||||++|||+++|++|+++|++|++++|+.++ ++++.+++... +.++.++++|++|+++++++++++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~~ 75 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAA------DQKAVFVGLDVTDKANFDSAIDEA 75 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTT------TCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHHHH
Confidence 6899999999999999999999999999999999887 77777776542 247899999999999999999999
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCC-CeEEEEcCCccccCCCCccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSP-SRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~-g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++. |+|||+||..++.+.
T Consensus 76 ~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 148 (258)
T 3a28_C 76 AEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGF------- 148 (258)
T ss_dssp HHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCC-------
T ss_pred HHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCC-------
Confidence 999999999999999987778889999999999999999999999999999998776 999999999876654
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------------hHHHHHHHHhhh
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------------PKIVQAAYHLIP 289 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------------~~~~~~~~~~~p 289 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|+|.+.. .+..+.+....|
T Consensus 149 --------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 219 (258)
T 3a28_C 149 --------PILSAYSTTKFAVRGLTQAAAQEL-APKGHTVNAYAPGIVGTGMWEQIDAELSKINGKPIGENFKEYSSSIA 219 (258)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSHHHHHHHHHHHHHHCCCTTHHHHHHHTTCT
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHHH-HhhCeEEEEEECCccCChhhhhhhhhhccccCCchHHHHHHHHhcCC
Confidence 777889999999999999999999 78899999999999999986541 222333344567
Q ss_pred hccc-CCCC
Q 022369 290 YFIF-NPQE 297 (298)
Q Consensus 290 ~~~~-~pe~ 297 (298)
++++ +|||
T Consensus 220 ~~r~~~p~d 228 (258)
T 3a28_C 220 LGRPSVPED 228 (258)
T ss_dssp TSSCBCHHH
T ss_pred CCCccCHHH
Confidence 7766 6654
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=291.91 Aligned_cols=208 Identities=23% Similarity=0.286 Sum_probs=182.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++ .+.++.+|++|++++++++++
T Consensus 2 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------~~~~~~~D~~~~~~~~~~~~~ 70 (245)
T 1uls_A 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-----------GAHPVVMDVADPASVERGFAE 70 (245)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----------TCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----------CCEEEEecCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999988777664332 267889999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||.. ..+.
T Consensus 71 ~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~~~------- 142 (245)
T 1uls_A 71 ALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YLGN------- 142 (245)
T ss_dssp HHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GGCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hcCC-------
Confidence 99999999999999999877788899999999999999999999999999999988889999999986 5443
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHHhhhhccc-CCCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~p~~~~-~pe~ 297 (298)
++...|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+..++. .+......|..++ +|||
T Consensus 143 --------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~d 211 (245)
T 1uls_A 143 --------LGQANYAASMAGVVGLTRTLALEL-GRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATPLGRAGKPLE 211 (245)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCTTCSCBCHHH
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHHH-hHhCeEEEEEEeCcCcCcchhhcCHHHHHHHHhhCCCCCCcCHHH
Confidence 667889999999999999999999 78899999999999999998765432 3344456677666 6654
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=299.77 Aligned_cols=193 Identities=22% Similarity=0.382 Sum_probs=179.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC---EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA---HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~---~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+++||++|||||++|||+++|++|+++|+ +|++++|+.++++++.+++.+..+ +.++.++++|++|+++++++
T Consensus 30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dv~d~~~v~~~ 105 (287)
T 3rku_A 30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFP----NAKVHVAQLDITQAEKIKPF 105 (287)
T ss_dssp HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCT----TCEEEEEECCTTCGGGHHHH
T ss_pred hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCC----CCeEEEEECCCCCHHHHHHH
Confidence 46789999999999999999999999998 999999999999999998877532 24799999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
++++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||.++..+.
T Consensus 106 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~--- 182 (287)
T 3rku_A 106 IENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAY--- 182 (287)
T ss_dssp HHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC---
T ss_pred HHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCC---
Confidence 9999999999999999999875 567889999999999999999999999999999999889999999999876655
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.
T Consensus 183 ------------~~~~~Y~asKaa~~~l~~~la~e~-~~~gIrvn~v~PG~v~T~~~ 226 (287)
T 3rku_A 183 ------------PTGSIYCASKFAVGAFTDSLRKEL-INTKIRVILIAPGLVETEFS 226 (287)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHT-TTSSCEEEEEEESCEESSHH
T ss_pred ------------CCCchHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEeCCcCcCccc
Confidence 778899999999999999999999 88999999999999999985
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=289.21 Aligned_cols=193 Identities=24% Similarity=0.348 Sum_probs=177.2
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCC--CCHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL--LSLDSVVRF 138 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~--s~~~~v~~~ 138 (298)
..++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+... .++.++.+|+ +|+++++++
T Consensus 8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~ 82 (252)
T 3f1l_A 8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETG-----RQPQWFILDLLTCTSENCQQL 82 (252)
T ss_dssp TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-----CCCEEEECCTTTCCHHHHHHH
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-----CCceEEEEecccCCHHHHHHH
Confidence 468899999999999999999999999999999999999999999888876532 2678899999 999999999
Q ss_pred HHHHhcccCCccEEEEccCCC-CCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 139 SEAWNGRLGPLHVLINNAGIF-SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
++++.+++|++|+||||||+. ...++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..++.+.
T Consensus 83 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~--- 159 (252)
T 3f1l_A 83 AQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGR--- 159 (252)
T ss_dssp HHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCC---
T ss_pred HHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCC---
Confidence 999999999999999999985 3467889999999999999999999999999999999889999999999876665
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
++...|++||+|+.+|+++|+.|+ .+. |+||+|+||+|+|++..
T Consensus 160 ------------~~~~~Y~asK~a~~~l~~~la~e~-~~~-irvn~v~PG~v~t~~~~ 203 (252)
T 3f1l_A 160 ------------ANWGAYAASKFATEGMMQVLADEY-QQR-LRVNCINPGGTRTAMRA 203 (252)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHT-TTT-CEEEEEECCSBSSHHHH
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHHh-cCC-cEEEEEecCcccCchhh
Confidence 778889999999999999999999 665 99999999999999853
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=298.10 Aligned_cols=195 Identities=19% Similarity=0.236 Sum_probs=172.4
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH-------HHHHHHHHHHhhcCCCCCccEEEEEcCCCCHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA-------ANELIQKWQEEWSGKGLPLNIEAMELDLLSLD 133 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 133 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+.++ +++..+++... +.++.++++|++|++
T Consensus 2 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~ 75 (274)
T 3e03_A 2 LTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAA------GGQGLALKCDIREED 75 (274)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHH------TSEEEEEECCTTCHH
T ss_pred CCCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhc------CCeEEEEeCCCCCHH
Confidence 35789999999999999999999999999999999999764 56666665543 247999999999999
Q ss_pred HHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccC
Q 022369 134 SVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213 (298)
Q Consensus 134 ~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~ 213 (298)
+++++++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..+..+
T Consensus 76 ~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~ 155 (274)
T 3e03_A 76 QVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNP 155 (274)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCH
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCC
Confidence 99999999999999999999999998888889999999999999999999999999999999988999999999986654
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCC-ccccCccC
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPG-IVSTNVAR 275 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg-~v~T~~~~ 275 (298)
. .++....|++||+|+.+|+++|+.|+ .++||+||+|+|| .++|+|.+
T Consensus 156 ~-------------~~~~~~~Y~asKaal~~l~~~la~e~-~~~gI~vn~v~PG~~v~T~~~~ 204 (274)
T 3e03_A 156 A-------------WWGAHTGYTLAKMGMSLVTLGLAAEF-GPQGVAINALWPRTVIATDAIN 204 (274)
T ss_dssp H-------------HHHHCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEECSBCBCC----
T ss_pred C-------------CCCCCchHHHHHHHHHHHHHHHHHHh-hhcCEEEEEEECCcccccchhh
Confidence 1 02567789999999999999999999 8889999999999 69999874
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=297.00 Aligned_cols=216 Identities=26% Similarity=0.389 Sum_probs=188.6
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++++. +.++.++.+|++|++++++++
T Consensus 17 m~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~~~~~v~~~~ 90 (277)
T 2rhc_B 17 MATQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA------GVEADGRTCDVRSVPEIEALV 90 (277)
T ss_dssp TCCTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHH
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEECCCCCHHHHHHHH
Confidence 44688999999999999999999999999999999999999988888777653 236889999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhh--hhcCCCCeEEEEcCCccccCCCCc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPS--LIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~--m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
+++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|. |++++.|+|||+||..+..+.
T Consensus 91 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~--- 167 (277)
T 2rhc_B 91 AAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGV--- 167 (277)
T ss_dssp HHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSCC---
T ss_pred HHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccCC---
Confidence 999999999999999999987777889999999999999999999999999999 988778999999998866554
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------------hHHHHHHH
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------------PKIVQAAY 285 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------------~~~~~~~~ 285 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+++|++.+.. ++..+.+.
T Consensus 168 ------------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (277)
T 2rhc_B 168 ------------VHAAPYSASKHGVVGFTKALGLEL-ARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRIT 234 (277)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHH-TTTEEEEEEEEECSBCSHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred ------------CCCccHHHHHHHHHHHHHHHHHHH-HHhCcEEEEEecCcCcCchhhhhhhhcccccccchHHHHHHHH
Confidence 677889999999999999999999 78899999999999999986543 11223333
Q ss_pred Hhhhhccc-CCCC
Q 022369 286 HLIPYFIF-NPQE 297 (298)
Q Consensus 286 ~~~p~~~~-~pe~ 297 (298)
...|++++ +|||
T Consensus 235 ~~~p~~r~~~~~d 247 (277)
T 2rhc_B 235 ARVPIGRYVQPSE 247 (277)
T ss_dssp HHSTTSSCBCHHH
T ss_pred hcCCCCCCcCHHH
Confidence 45677766 6654
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-41 Score=294.28 Aligned_cols=194 Identities=24% Similarity=0.333 Sum_probs=177.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+... .++.++++|++|++++++++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 78 (263)
T 3ai3_A 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFG-----VRVLEVAVDVATPEGVDAVVES 78 (263)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-----CCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcC-----CceEEEEcCCCCHHHHHHHHHH
Confidence 47789999999999999999999999999999999999998888887765321 3688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+....++.+.+.++|++.+++|+.++++++++++|.|++++.|+|||+||..++.+.
T Consensus 79 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 151 (263)
T 3ai3_A 79 VRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQPL------- 151 (263)
T ss_dssp HHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCC-------
Confidence 9999999999999999987778889999999999999999999999999999998888999999999876654
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+.
T Consensus 152 --------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~ 197 (263)
T 3ai3_A 152 --------WYEPIYNVTKAALMMFSKTLATEV-IKDNIRVNCINPGLILTPDWIK 197 (263)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCHHHHH
T ss_pred --------CCcchHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccCcchhh
Confidence 677889999999999999999999 7889999999999999998654
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-41 Score=297.28 Aligned_cols=194 Identities=16% Similarity=0.217 Sum_probs=175.5
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch-------HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK-------AANELIQKWQEEWSGKGLPLNIEAMELDLLSLD 133 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 133 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.+ .+++..+++.+. +.++.++++|++|++
T Consensus 5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~ 78 (285)
T 3sc4_A 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEA------GGQALPIVGDIRDGD 78 (285)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHH------TSEEEEEECCTTSHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhc------CCcEEEEECCCCCHH
Confidence 3578999999999999999999999999999999999987 566777776653 247999999999999
Q ss_pred HHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccC
Q 022369 134 SVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213 (298)
Q Consensus 134 ~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~ 213 (298)
+++++++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..+..+
T Consensus 79 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~ 158 (285)
T 3sc4_A 79 AVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEP 158 (285)
T ss_dssp HHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSG
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccC
Confidence 99999999999999999999999998888899999999999999999999999999999999988999999999876554
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCC-ccccCccC
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPG-IVSTNVAR 275 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg-~v~T~~~~ 275 (298)
. .+....|++||+|+.+|+++|+.|+ .++||+||+|+|| .++|++.+
T Consensus 159 ~--------------~~~~~~Y~asKaal~~~~~~la~e~-~~~gI~vn~v~PG~~v~t~~~~ 206 (285)
T 3sc4_A 159 K--------------WLRPTPYMMAKYGMTLCALGIAEEL-RDAGIASNTLWPRTTVATAAVQ 206 (285)
T ss_dssp G--------------GSCSHHHHHHHHHHHHHHHHHHHHT-GGGTCEEEEEECSSCBCCHHHH
T ss_pred C--------------CCCCchHHHHHHHHHHHHHHHHHHh-cccCcEEEEEeCCCccccHHHH
Confidence 2 1456789999999999999999999 8889999999999 79998854
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=293.64 Aligned_cols=211 Identities=24% Similarity=0.260 Sum_probs=184.6
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|++|||||++|||+++|++|+++|++|++++|+.++++++.+++... +.++.++++|++|+++++++++++.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~~~~~~~~ 75 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA------GGHAVAVKVDVSDRDQVFAAVEQARK 75 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999988888777653 23688999999999999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++ .|+|||+||..++.+.
T Consensus 76 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~--------- 146 (256)
T 1geg_A 76 TLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN--------- 146 (256)
T ss_dssp HTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC---------
T ss_pred HhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCC---------
Confidence 999999999999998777888899999999999999999999999999999877 7999999999876654
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------------hHHHHHHHHhhhhc
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------------PKIVQAAYHLIPYF 291 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------------~~~~~~~~~~~p~~ 291 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+.. .+..+.+....|++
T Consensus 147 ------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 219 (256)
T 1geg_A 147 ------PELAVYSSSKFAVRGLTQTAARDL-APLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLG 219 (256)
T ss_dssp ------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTC
T ss_pred ------CCchhHHHHHHHHHHHHHHHHHHH-HHcCeEEEEEEECCCccchhhhhhhhccccccCChHHHHHHHHhcCCCC
Confidence 677889999999999999999999 78899999999999999986543 11223333456776
Q ss_pred cc-CCCC
Q 022369 292 IF-NPQE 297 (298)
Q Consensus 292 ~~-~pe~ 297 (298)
++ +|||
T Consensus 220 r~~~p~d 226 (256)
T 1geg_A 220 RLSEPED 226 (256)
T ss_dssp SCBCHHH
T ss_pred CCcCHHH
Confidence 66 6654
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-41 Score=290.77 Aligned_cols=212 Identities=22% Similarity=0.307 Sum_probs=161.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++.+|++|+++++++++
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~ 78 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVAD------GGTAISVAVDVSDPESAKAMAD 78 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCEEEEEECCTTSHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHH
Confidence 4678999999999999999999999999999999999999999998888663 2478999999999999999999
Q ss_pred HHhcccCCccEEEEccCCC---CCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 141 AWNGRLGPLHVLINNAGIF---SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~---~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
++.+.+|++|+||||||+. ...++.+.+.++|++.+++|+.|+++++++++|.|++++.|+||++||.+++
T Consensus 79 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~------ 152 (253)
T 3qiv_A 79 RTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAW------ 152 (253)
T ss_dssp HHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC----------
T ss_pred HHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCcccc------
Confidence 9999999999999999983 4456778899999999999999999999999999999889999999998754
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch--HHHHHHHHhhhhccc-C
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP--KIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~--~~~~~~~~~~p~~~~-~ 294 (298)
+....|++||+|+++|+++++.|+ .++||+|++|+||+|+|++.+... +..+...+..|..++ +
T Consensus 153 ------------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (253)
T 3qiv_A 153 ------------LYSNYYGLAKVGINGLTQQLSREL-GGRNIRINAIAPGPIDTEANRTTTPKEMVDDIVKGLPLSRMGT 219 (253)
T ss_dssp -------------------CCHHHHHHHHHHHHHHT-TTTTEEEEEEEC-------------------------------
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEecCCcccchhhcCcHHHHHHHhccCCCCCCCC
Confidence 234569999999999999999999 788999999999999999987542 233445566777777 7
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 220 ~~d 222 (253)
T 3qiv_A 220 PDD 222 (253)
T ss_dssp CCH
T ss_pred HHH
Confidence 765
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-41 Score=293.62 Aligned_cols=189 Identities=24% Similarity=0.394 Sum_probs=166.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc-hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL-KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|++|||||++|||+++|++|+++|++|++++|+. +++++ ++.+. +.++.++++|++|+++++++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~~~------~~~~~~~~~Dv~~~~~v~~~~~ 74 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA---AIRNL------GRRVLTVKCDVSQPGDVEAFGK 74 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH---HHHHT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH---HHHhc------CCcEEEEEeecCCHHHHHHHHH
Confidence 46789999999999999999999999999999999998 76665 23221 2378899999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||..++.+.
T Consensus 75 ~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 148 (249)
T 2ew8_A 75 QVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI------ 148 (249)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCC------
Confidence 99999999999999999987778889999999999999999999999999999998888999999999876654
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+
T Consensus 149 ---------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~ 193 (249)
T 2ew8_A 149 ---------EAYTHYISTKAANIGFTRALASDL-GKDGITVNAIAPSLVRTATTE 193 (249)
T ss_dssp ---------SSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCC------
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcCcCccch
Confidence 777889999999999999999999 788999999999999999976
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=290.66 Aligned_cols=216 Identities=26% Similarity=0.381 Sum_probs=187.7
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++.+|++|++++++++
T Consensus 9 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~ 82 (260)
T 2zat_A 9 RKPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGE------GLSVTGTVCHVGKAEDRERLV 82 (260)
T ss_dssp -CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHH
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHH
Confidence 34678999999999999999999999999999999999999888888777653 236889999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+.+|++|+||||||+.. ..++.+.+.++|++.+++|+.++++++++++|+|++++.|+|||+||..++.+.
T Consensus 83 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 158 (260)
T 2zat_A 83 AMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPF---- 158 (260)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCC----
Confidence 999999999999999999864 356788999999999999999999999999999998888999999999876554
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-C
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~ 294 (298)
++...|++||+++++|+++++.|+ .++||+||+|+||+++|++.+.. .+..+......|++++ +
T Consensus 159 -----------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (260)
T 2zat_A 159 -----------PNLGPYNVSKTALLGLTKNLAVEL-APRNIRVNCLAPGLIKTNFSQVLWMDKARKEYMKESLRIRRLGN 226 (260)
T ss_dssp -----------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSSTTHHHHSSHHHHHHHHHHHTCSSCBC
T ss_pred -----------CCchhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEECcccCccchhcccChHHHHHHHhcCCCCCCCC
Confidence 777889999999999999999999 78899999999999999986531 1222333446677777 7
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 227 ~~d 229 (260)
T 2zat_A 227 PED 229 (260)
T ss_dssp GGG
T ss_pred HHH
Confidence 775
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-41 Score=296.88 Aligned_cols=216 Identities=28% Similarity=0.379 Sum_probs=186.5
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+..++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. + ++.++.+|++|+++++++
T Consensus 23 ~~~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~------~-~~~~~~~Dv~d~~~v~~~ 95 (276)
T 2b4q_A 23 PYFSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAY------G-DCQAIPADLSSEAGARRL 95 (276)
T ss_dssp TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTS------S-CEEECCCCTTSHHHHHHH
T ss_pred cccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------C-ceEEEEeeCCCHHHHHHH
Confidence 445688999999999999999999999999999999999998888877766431 2 688899999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCC----CeEEEEcCCccccCC
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSP----SRIINVNSVMHYVGF 214 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~----g~Iv~isS~~~~~~~ 214 (298)
++++.+.+|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++. |+|||+||.+++.+.
T Consensus 96 ~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~~ 175 (276)
T 2b4q_A 96 AQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAM 175 (276)
T ss_dssp HHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCCC
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCCC
Confidence 9999999999999999999987778889999999999999999999999999999988765 899999999876654
Q ss_pred CCcccccccccccCCCCcc-cchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH-HHHHHHH--hhhh
Q 022369 215 VDTEDMNVVSGRRKYTSLM-GYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK-IVQAAYH--LIPY 290 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~-~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~-~~~~~~~--~~p~ 290 (298)
+... .|++||+++++|+++++.|+ .++||+||+|+||+|+|++.+.... ..+.+.. ..|+
T Consensus 176 ---------------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~ 239 (276)
T 2b4q_A 176 ---------------GEQAYAYGPSKAALHQLSRMLAKEL-VGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASIPM 239 (276)
T ss_dssp ---------------CCSCTTHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCSTTTHHHHHCHHHHHHHHHTSTT
T ss_pred ---------------CCCccccHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeccCcCcchhhcchhHHHHHHhhcCCCC
Confidence 5556 89999999999999999999 7889999999999999999754321 1222333 5677
Q ss_pred ccc-CCCC
Q 022369 291 FIF-NPQE 297 (298)
Q Consensus 291 ~~~-~pe~ 297 (298)
+++ +|||
T Consensus 240 ~r~~~p~d 247 (276)
T 2b4q_A 240 GRWGRPEE 247 (276)
T ss_dssp SSCCCHHH
T ss_pred CCcCCHHH
Confidence 766 6654
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=294.52 Aligned_cols=212 Identities=23% Similarity=0.271 Sum_probs=173.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++.+|++|+++++++++
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~~~~~~ 75 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIG---------DAALAVAADISKEADVDAAVE 75 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------TTEEEEECCTTSHHHHHHHHH
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhC---------CceEEEEecCCCHHHHHHHHH
Confidence 46789999999999999999999999999999999999999888877652 378999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC----CCeEEEEcCCccccCCC
Q 022369 141 AWNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS----PSRIINVNSVMHYVGFV 215 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~----~g~Iv~isS~~~~~~~~ 215 (298)
++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.++++++++++|+|++++ .|+||++||..+..+.
T Consensus 76 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~- 154 (261)
T 3n74_A 76 AALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPR- 154 (261)
T ss_dssp HHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCC-
T ss_pred HHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCC-
Confidence 99999999999999999876 56778889999999999999999999999999998764 6789999999866654
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch-----HHHHHHHHhhhh
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-----KIVQAAYHLIPY 290 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~-----~~~~~~~~~~p~ 290 (298)
+....|++||+|+++|+++|+.|+ .++||+|++|+||+++|++.+... +..+.+....|+
T Consensus 155 --------------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 219 (261)
T 3n74_A 155 --------------PNLAWYNATKGWVVSVTKALAIEL-APAKIRVVALNPVAGETPLLTTFMGEDSEEIRKKFRDSIPM 219 (261)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC-------------------------CTT
T ss_pred --------------CCccHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCcccChhhhhhcccCcHHHHHHHhhcCCc
Confidence 778889999999999999999999 788999999999999999987542 223344556777
Q ss_pred ccc-CCCC
Q 022369 291 FIF-NPQE 297 (298)
Q Consensus 291 ~~~-~pe~ 297 (298)
+++ +|||
T Consensus 220 ~~~~~~~d 227 (261)
T 3n74_A 220 GRLLKPDD 227 (261)
T ss_dssp SSCCCHHH
T ss_pred CCCcCHHH
Confidence 776 6654
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-41 Score=293.65 Aligned_cols=215 Identities=19% Similarity=0.222 Sum_probs=183.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++..... +.++.++.+|++|++++++++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~ 79 (260)
T 2z1n_A 4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVS----GAQVDIVAGDIREPGDIDRLFEK 79 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHST----TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC----CCeEEEEEccCCCHHHHHHHHHH
Confidence 47789999999999999999999999999999999999999888887764211 12688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++| +|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||..++.+.
T Consensus 80 ~~~~~g-id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 151 (260)
T 2z1n_A 80 ARDLGG-ADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPW------- 151 (260)
T ss_dssp HHHTTC-CSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHHhcC-CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCC-------
Confidence 999999 999999999887777888999999999999999999999999999998888999999999876554
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC----------CchHH--HHHHHHhhh
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR----------DLPKI--VQAAYHLIP 289 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~----------~~~~~--~~~~~~~~p 289 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+ ..++. .+.+....|
T Consensus 152 --------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 222 (260)
T 2z1n_A 152 --------QDLALSNIMRLPVIGVVRTLALEL-APHGVTVNAVLPSLILTDRVRSLAEERARRSGITVEEALKSMASRIP 222 (260)
T ss_dssp --------TTBHHHHHHTHHHHHHHHHHHHHH-GGGTEEEEEEEECHHHHCCCC-----------------------CCT
T ss_pred --------CCCchhHHHHHHHHHHHHHHHHHH-hhhCeEEEEEEECCcccchhhhhhhhhhcccCCcHHHHHHHHHhcCC
Confidence 677889999999999999999999 788999999999999999976 22221 233334567
Q ss_pred hccc-CCCC
Q 022369 290 YFIF-NPQE 297 (298)
Q Consensus 290 ~~~~-~pe~ 297 (298)
++++ +|||
T Consensus 223 ~~r~~~~~d 231 (260)
T 2z1n_A 223 MGRVGKPEE 231 (260)
T ss_dssp TSSCCCHHH
T ss_pred CCCccCHHH
Confidence 7766 6654
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-41 Score=295.33 Aligned_cols=209 Identities=20% Similarity=0.238 Sum_probs=177.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++++|++|++++++++++
T Consensus 2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~ 72 (281)
T 3zv4_A 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH---------GGNAVGVVGDVRSLQDQKRAAER 72 (281)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---------BTTEEEEECCTTCHHHHHHHHHH
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHc---------CCcEEEEEcCCCCHHHHHHHHHH
Confidence 467999999999999999999999999999999999998887765543 23789999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCC-CC----CccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 142 WNGRLGPLHVLINNAGIFSIG-EP----QKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~-~~----~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
+.+++|++|+||||||+.... ++ .+.+.++|++.+++|+.|+++++++++|+|++++ |+||++||..++.+.
T Consensus 73 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~-- 149 (281)
T 3zv4_A 73 CLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR-GSVVFTISNAGFYPN-- 149 (281)
T ss_dssp HHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTSSS--
T ss_pred HHHhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CeEEEEecchhccCC--
Confidence 999999999999999986432 22 2445678999999999999999999999998765 899999999876655
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-----------hHHHHHHH
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-----------PKIVQAAY 285 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-----------~~~~~~~~ 285 (298)
+....|++||+|+.+|+++|+.|+ .+. |+||+|+||+|+|+|.... .+..+...
T Consensus 150 -------------~~~~~Y~asKaa~~~l~~~la~e~-~~~-Irvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (281)
T 3zv4_A 150 -------------GGGPLYTATKHAVVGLVRQMAFEL-APH-VRVNGVAPGGMNTDLRGPSSLGLSEQSISSVPLADMLK 214 (281)
T ss_dssp -------------SSCHHHHHHHHHHHHHHHHHHHHH-TTT-SEEEEEEECSSCC--CCCTTCC--------CCHHHHHH
T ss_pred -------------CCCchhHHHHHHHHHHHHHHHHHh-cCC-CEEEEEECCcCcCCcccccccccccccccchhHHHHHH
Confidence 778889999999999999999999 665 9999999999999997532 11234455
Q ss_pred Hhhhhccc-CCCC
Q 022369 286 HLIPYFIF-NPQE 297 (298)
Q Consensus 286 ~~~p~~~~-~pe~ 297 (298)
...|++++ +|||
T Consensus 215 ~~~p~~r~~~ped 227 (281)
T 3zv4_A 215 SVLPIGRMPALEE 227 (281)
T ss_dssp HTCTTSSCCCGGG
T ss_pred hcCCCCCCCCHHH
Confidence 68899888 8876
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=296.09 Aligned_cols=217 Identities=22% Similarity=0.274 Sum_probs=182.4
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC-chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN-LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
+..+++||++|||||++|||+++|++|+++|++|++++|+ .+..+++.+++.+. +.++.++++|++|++++++
T Consensus 23 ~~m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~ 96 (271)
T 4iin_A 23 NAMQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEK------GYKAAVIKFDAASESDFIE 96 (271)
T ss_dssp -CCCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHH
T ss_pred hhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhc------CCceEEEECCCCCHHHHHH
Confidence 3457889999999999999999999999999999999995 55556666655542 2478999999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
+++++.+.+|++|+||||||+....++.+.+.++|++.+++|+.|++++++.++|.|++++.|+||++||.++..+.
T Consensus 97 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--- 173 (271)
T 4iin_A 97 AIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGN--- 173 (271)
T ss_dssp HHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC---
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCC---
Confidence 99999999999999999999988888889999999999999999999999999999999888999999998876655
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHH-HHHHHhhhhccc-CC
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIV-QAAYHLIPYFIF-NP 295 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~-~~~~~~~p~~~~-~p 295 (298)
++...|++||+|+.+|+++++.|+ .++||+|++|+||+|+|++.+...+.. +......|++++ +|
T Consensus 174 ------------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p 240 (271)
T 4iin_A 174 ------------MGQTNYSASKGGMIAMSKSFAYEG-ALRNIRFNSVTPGFIETDMNANLKDELKADYVKNIPLNRLGSA 240 (271)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCCC------------CGGGCTTCSCBCH
T ss_pred ------------CCchHhHHHHHHHHHHHHHHHHHH-HHhCcEEEEEEeCcccCCchhhhcHHHHHHHHhcCCcCCCcCH
Confidence 778899999999999999999999 788999999999999999988764432 333446677666 65
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 241 ~d 242 (271)
T 4iin_A 241 KE 242 (271)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=295.17 Aligned_cols=213 Identities=16% Similarity=0.115 Sum_probs=178.4
Q ss_pred CCCCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 60 LPPVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 60 ~~~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
+.+++||++|||||+ +|||+++|++|+++|++|++++|+.+..+. .+++.+.. .++.++++|++|++++++
T Consensus 26 ~~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~-~~~~~~~~------~~~~~~~~Dv~d~~~v~~ 98 (293)
T 3grk_A 26 SGLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKR-VEPLAEEL------GAFVAGHCDVADAASIDA 98 (293)
T ss_dssp -CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHH-HHHHHHHH------TCEEEEECCTTCHHHHHH
T ss_pred cccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHH-HHHHHHhc------CCceEEECCCCCHHHHHH
Confidence 346889999999999 569999999999999999999999544333 34444332 257899999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCC----CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFS----IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~----~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~ 213 (298)
+++++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.++++++++++|+|++ .|+|||+||.+++.+
T Consensus 99 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~--~g~Iv~isS~~~~~~ 176 (293)
T 3grk_A 99 VFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMAD--GGSILTLTYYGAEKV 176 (293)
T ss_dssp HHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT--CEEEEEEECGGGTSB
T ss_pred HHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccC--CCEEEEEeehhhccC
Confidence 99999999999999999999976 467889999999999999999999999999999976 689999999987665
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhh
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPY 290 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~ 290 (298)
. +....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+... +..+......|+
T Consensus 177 ~---------------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~ 240 (293)
T 3grk_A 177 M---------------PNYNVMGVAKAALEASVKYLAVDL-GPQNIRVNAISAGPIKTLAASGIGDFRYILKWNEYNAPL 240 (293)
T ss_dssp C---------------TTTTHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCC------CCHHHHHHHHHHHSTT
T ss_pred C---------------CchHHHHHHHHHHHHHHHHHHHHH-hHhCCEEEEEecCCCcchhhhcccchHHHHHHHHhcCCC
Confidence 4 778889999999999999999999 888999999999999999987653 334455567888
Q ss_pred ccc-CCCC
Q 022369 291 FIF-NPQE 297 (298)
Q Consensus 291 ~~~-~pe~ 297 (298)
+++ +|||
T Consensus 241 ~r~~~ped 248 (293)
T 3grk_A 241 RRTVTIDE 248 (293)
T ss_dssp SSCCCHHH
T ss_pred CCCCCHHH
Confidence 877 7664
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=295.53 Aligned_cols=217 Identities=23% Similarity=0.212 Sum_probs=180.1
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc-hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCC----HH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL-KAANELIQKWQEEWSGKGLPLNIEAMELDLLS----LD 133 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~----~~ 133 (298)
+..+++||++|||||++|||+++|++|+++|++|++++|+. ++++++.+++.+.. +.++.++++|++| ++
T Consensus 17 ~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-----~~~~~~~~~Dv~~~~~~~~ 91 (288)
T 2x9g_A 17 RGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKER-----SNTAVVCQADLTNSNVLPA 91 (288)
T ss_dssp -----CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHS-----TTCEEEEECCCSCSTTHHH
T ss_pred CCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhc-----CCceEEEEeecCCccCCHH
Confidence 34568899999999999999999999999999999999998 88888888776322 2378999999999 99
Q ss_pred HHHHHHHHHhcccCCccEEEEccCCCCCCCC-----Cc-----cChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-----
Q 022369 134 SVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-----QK-----FSKDGYEEHMQVNHLAPALLSILLFPSLIRGS----- 198 (298)
Q Consensus 134 ~v~~~~~~~~~~~g~idilVnnag~~~~~~~-----~~-----~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~----- 198 (298)
+++++++++.+.+|++|+||||||+....++ .+ .+.++|++.+++|+.++++++++++|.|++++
T Consensus 92 ~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~ 171 (288)
T 2x9g_A 92 SCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTS 171 (288)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------C
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCC
Confidence 9999999999999999999999998776666 66 88899999999999999999999999998876
Q ss_pred -CCeEEEEcCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 199 -PSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 199 -~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
.|+|||+||.+++.+. +....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++ +..
T Consensus 172 ~~g~iv~isS~~~~~~~---------------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~-~~~ 234 (288)
T 2x9g_A 172 SNLSIVNLCDAMVDQPC---------------MAFSLYNMGKHALVGLTQSAALEL-APYGIRVNGVAPGVSLLPV-AMG 234 (288)
T ss_dssp CCEEEEEECCTTTTSCC---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSCSCCT-TSC
T ss_pred CCeEEEEEecccccCCC---------------CCCchHHHHHHHHHHHHHHHHHHh-hccCeEEEEEEeccccCcc-ccC
Confidence 7899999999866554 778889999999999999999999 7889999999999999999 533
Q ss_pred hHHHHHHHHhhhhccc--CCCC
Q 022369 278 PKIVQAAYHLIPYFIF--NPQE 297 (298)
Q Consensus 278 ~~~~~~~~~~~p~~~~--~pe~ 297 (298)
++..+.+....|++++ +|||
T Consensus 235 ~~~~~~~~~~~p~~r~~~~ped 256 (288)
T 2x9g_A 235 EEEKDKWRRKVPLGRREASAEQ 256 (288)
T ss_dssp HHHHHHHHHTCTTTSSCCCHHH
T ss_pred hHHHHHHHhhCCCCCCCCCHHH
Confidence 3333444455677665 5553
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=290.28 Aligned_cols=200 Identities=26% Similarity=0.359 Sum_probs=174.5
Q ss_pred CCCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHH
Q 022369 56 NPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSV 135 (298)
Q Consensus 56 ~~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v 135 (298)
.+.++.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++.+|++|++++
T Consensus 20 ~~~~m~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v 93 (262)
T 3rkr_A 20 DDKHMSSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA------GGEAESHACDLSHSDAI 93 (262)
T ss_dssp -----CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCEEEEEECCTTCHHHH
T ss_pred CcchhhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh------CCceeEEEecCCCHHHH
Confidence 345567789999999999999999999999999999999999999999998888663 24789999999999999
Q ss_pred HHHHHHHhcccCCccEEEEccCC-CCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC
Q 022369 136 VRFSEAWNGRLGPLHVLINNAGI-FSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 136 ~~~~~~~~~~~g~idilVnnag~-~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~ 214 (298)
+++++++.+.+|++|+||||||+ ...+++.+.+.++|++.+++|+.|+++++++++|.|++++.|+||++||.++..+.
T Consensus 94 ~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~ 173 (262)
T 3rkr_A 94 AAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPV 173 (262)
T ss_dssp HHHHHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCCC
T ss_pred HHHHHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCC
Confidence 99999999999999999999998 45567888999999999999999999999999999999889999999999876655
Q ss_pred CCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|++||+|+.+|+++++.|+ .+.||+|++|+||+|+|+|....
T Consensus 174 ---------------~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~ 220 (262)
T 3rkr_A 174 ---------------ADGAAYTASKWGLNGLMTSAAEEL-RQHQVRVSLVAPGSVRTEFGVGL 220 (262)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCC--------
T ss_pred ---------------CCCchHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCCCcCCccccc
Confidence 778889999999999999999999 78899999999999999997654
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-41 Score=301.05 Aligned_cols=216 Identities=21% Similarity=0.218 Sum_probs=186.6
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEE-cCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHH-----
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAV-RNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLD----- 133 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~----- 133 (298)
+.++++|++|||||++|||+++|++|+++|++|++++ |+.++++++.+++.... +.++.++++|++|++
T Consensus 41 m~~l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dl~d~~~~~~~ 115 (328)
T 2qhx_A 41 MTAPTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARR-----PNSAITVQADLSNVATAPVS 115 (328)
T ss_dssp ----CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHS-----TTCEEEEECCCSSSCBCC--
T ss_pred ccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-----CCeEEEEEeeCCCchhcccc
Confidence 3347899999999999999999999999999999999 99999998888876322 237899999999999
Q ss_pred ------------HHHHHHHHHhcccCCccEEEEccCCCCCCCCCccC--------------hhhHHHHHhhhchHHHHHH
Q 022369 134 ------------SVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFS--------------KDGYEEHMQVNHLAPALLS 187 (298)
Q Consensus 134 ------------~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~--------------~~~~~~~~~vN~~~~~~l~ 187 (298)
+++++++++.+++|++|+||||||+....++.+.+ .++|++.+++|+.|+++++
T Consensus 116 ~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~ 195 (328)
T 2qhx_A 116 GADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLI 195 (328)
T ss_dssp -----CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998777778888 8999999999999999999
Q ss_pred HHHhhhhhcCC------CCeEEEEcCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEE
Q 022369 188 ILLFPSLIRGS------PSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINV 261 (298)
Q Consensus 188 ~~~lp~m~~~~------~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v 261 (298)
++++|.|++++ .|+|||+||..+..+. ++...|++||+++.+|+++|+.|+ .++||+|
T Consensus 196 ~~~~~~m~~~~~~~~~~~g~IV~isS~~~~~~~---------------~~~~~Y~asKaal~~l~~~la~el-~~~gIrv 259 (328)
T 2qhx_A 196 KAFAHRVAGTPAKHRGTNYSIINMVDAMTNQPL---------------LGYTIYTMAKGALEGLTRSAALEL-APLQIRV 259 (328)
T ss_dssp HHHHHHHHHSCGGGSCSCEEEEEECCTTTTSCC---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEE
T ss_pred HHHHHHHHhcCCcCCCCCcEEEEECchhhccCC---------------CCcHHHHHHHHHHHHHHHHHHHHH-hhcCcEE
Confidence 99999999877 7999999999876654 778889999999999999999999 7889999
Q ss_pred EEeeCCccccCccCCchHHHHHHHHhhhhc-cc-CCCC
Q 022369 262 VCVSPGIVSTNVARDLPKIVQAAYHLIPYF-IF-NPQE 297 (298)
Q Consensus 262 ~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~-~~-~pe~ 297 (298)
|+|+||+|+|++ +..++..+.+....|+. ++ +|||
T Consensus 260 n~v~PG~v~T~~-~~~~~~~~~~~~~~p~~~r~~~ped 296 (328)
T 2qhx_A 260 NGVGPGLSVLVD-DMPPAVWEGHRSKVPLYQRDSSAAE 296 (328)
T ss_dssp EEEEESSBSCCC-CSCHHHHHHHHTTCTTTTSCBCHHH
T ss_pred EEEecCcccCCc-cccHHHHHHHHhhCCCCCCCCCHHH
Confidence 999999999999 66655445555567876 65 6664
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=290.12 Aligned_cols=217 Identities=19% Similarity=0.217 Sum_probs=189.7
Q ss_pred CCCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHH-HHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 61 PPVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAA-NELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 61 ~~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
.+++||++|||||+ +|||+++|++|+++|++|++++|+.++. ++..+++.+..+ .++.++++|++|++++++
T Consensus 16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~Dl~~~~~v~~ 90 (267)
T 3gdg_A 16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYG-----IKAKAYKCQVDSYESCEK 90 (267)
T ss_dssp HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHC-----CCEECCBCCTTCHHHHHH
T ss_pred cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcC-----CceeEEecCCCCHHHHHH
Confidence 36789999999999 9999999999999999999999887665 677777765432 479999999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
+++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+||++||.++..+..
T Consensus 91 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~-- 168 (267)
T 3gdg_A 91 LVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANF-- 168 (267)
T ss_dssp HHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCS--
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccCC--
Confidence 999999999999999999999888888999999999999999999999999999999998889999999988765531
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHH-HHHHHhhhhccc-CC
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIV-QAAYHLIPYFIF-NP 295 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~-~~~~~~~p~~~~-~p 295 (298)
.+....|++||+|+.+|+++++.|+ .+. |+||+|+||+|+|++.+..++.. +.+....|++++ +|
T Consensus 169 -----------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~-i~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~r~~~~ 235 (267)
T 3gdg_A 169 -----------PQEQTSYNVAKAGCIHMARSLANEW-RDF-ARVNSISPGYIDTGLSDFVPKETQQLWHSMIPMGRDGLA 235 (267)
T ss_dssp -----------SSCCHHHHHHHHHHHHHHHHHHHHT-TTT-CEEEEEEECCEECSCGGGSCHHHHHHHHTTSTTSSCEET
T ss_pred -----------CCCCCcchHHHHHHHHHHHHHHHHh-ccC-cEEEEEECCccccchhhhCCHHHHHHHHhcCCCCCCcCH
Confidence 1366789999999999999999999 666 99999999999999998775544 344457788877 66
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 236 ~d 237 (267)
T 3gdg_A 236 KE 237 (267)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-41 Score=294.25 Aligned_cols=208 Identities=23% Similarity=0.284 Sum_probs=179.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++++|++|++++++++++
T Consensus 3 ~l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~ 73 (263)
T 2a4k_A 3 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALE---------AEAIAVVADVSDPKAVEAVFAE 73 (263)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC---------SSEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---------CceEEEEcCCCCHHHHHHHHHH
Confidence 4678999999999999999999999999999999999888777655431 2688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+| ++ .|+|||+||..++ +.
T Consensus 74 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~-~~-~g~iv~isS~~~~-~~------- 143 (263)
T 2a4k_A 74 ALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVL-EE-GGSLVLTGSVAGL-GA------- 143 (263)
T ss_dssp HHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-CT-TCEEEEECCCTTC-CH-------
T ss_pred HHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHH-hc-CCEEEEEecchhc-CC-------
Confidence 99999999999999999877788899999999999999999999999999999 54 7999999999876 43
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH-HHHHHHHhhhhccc-CCCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK-IVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~-~~~~~~~~~p~~~~-~pe~ 297 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+...+ ..+......|+.++ +|||
T Consensus 144 --------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~~~~~p~d 212 (263)
T 2a4k_A 144 --------FGLAHYAAGKLGVVGLARTLALEL-ARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPLGRAGRPEE 212 (263)
T ss_dssp --------HHHHHHHHCSSHHHHHHHHHHHHH-TTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTSTTCSCBCHHH
T ss_pred --------CCcHHHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEEeCcCcCchhhhcCHHHHHHHHhcCCCCCCcCHHH
Confidence 567789999999999999999999 7889999999999999999876543 23344456677766 6654
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=295.84 Aligned_cols=215 Identities=23% Similarity=0.302 Sum_probs=183.5
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..+++||++|||||++|||+++|++|+++|++|++++|+.++..+...+..+. .+.++.++++|++|++++++++
T Consensus 42 ~~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~Dv~d~~~v~~~~ 116 (291)
T 3ijr_A 42 SEKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEK-----EGVKCVLLPGDLSDEQHCKDIV 116 (291)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHT-----TTCCEEEEESCTTSHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHh-----cCCcEEEEECCCCCHHHHHHHH
Confidence 35688999999999999999999999999999999999987544433333222 1247999999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.|+++++++++|+|++ .|+|||+||..++.+.
T Consensus 117 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~--~g~iv~isS~~~~~~~---- 190 (291)
T 3ijr_A 117 QETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQ--GDVIINTASIVAYEGN---- 190 (291)
T ss_dssp HHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCT--TCEEEEECCTHHHHCC----
T ss_pred HHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhh--CCEEEEEechHhcCCC----
Confidence 999999999999999999864 356788899999999999999999999999999965 5799999999877665
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc--hHHHHHHHHhhhhccc-CC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~--~~~~~~~~~~~p~~~~-~p 295 (298)
+....|++||+|+++|+++|+.|+ .++||+||+|+||+|+|++.... .+..+.+....|++++ +|
T Consensus 191 -----------~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~p~~r~~~p 258 (291)
T 3ijr_A 191 -----------ETLIDYSATKGAIVAFTRSLSQSL-VQKGIRVNGVAPGPIWTPLIPSSFDEKKVSQFGSNVPMQRPGQP 258 (291)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSTHHHHHSCHHHHHHTTTTSTTSSCBCG
T ss_pred -----------CCChhHHHHHHHHHHHHHHHHHHH-hhcCEEEEEEeeCCCcCCcccccCCHHHHHHHHccCCCCCCcCH
Confidence 777889999999999999999999 78899999999999999996532 2333344457788887 77
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 259 ~d 260 (291)
T 3ijr_A 259 YE 260 (291)
T ss_dssp GG
T ss_pred HH
Confidence 76
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-41 Score=295.22 Aligned_cols=217 Identities=25% Similarity=0.337 Sum_probs=182.1
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEE-cCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAV-RNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
+...+++|++|||||++|||+++|++|+++|++|++++ |+.+.+++..+++... +.++.++.+|++|++++++
T Consensus 19 p~~~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~v~~ 92 (269)
T 3gk3_A 19 PGSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDA------GRDFKAYAVDVADFESCER 92 (269)
T ss_dssp -----CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTT------TCCCEEEECCTTCHHHHHH
T ss_pred chhhhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc------CCceEEEEecCCCHHHHHH
Confidence 34457789999999999999999999999999999999 5656666665555432 2478999999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
+++++.+++|++|+||||||+....++.+.+.++|++.+++|+.+++++++.++|.|++++.|+||++||.++..+.
T Consensus 93 ~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~--- 169 (269)
T 3gk3_A 93 CAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGA--- 169 (269)
T ss_dssp HHHHHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC---
T ss_pred HHHHHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCC---
Confidence 99999999999999999999988788889999999999999999999999999999999888999999998876655
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHH--HHHHhhhhccc-C
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQ--AAYHLIPYFIF-N 294 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~--~~~~~~p~~~~-~ 294 (298)
++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+...+... ......|.+++ +
T Consensus 170 ------------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (269)
T 3gk3_A 170 ------------FGQANYASAKAGIHGFTKTLALET-AKRGITVNTVSPGYLATAMVEAVPQDVLEAKILPQIPVGRLGR 236 (269)
T ss_dssp ------------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTTTC-------CCSGGGCTTSSCBC
T ss_pred ------------CCcchHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEecCcccchhhhhhchhHHHHHhhhcCCcCCccC
Confidence 778899999999999999999999 7889999999999999999887643221 23345666665 5
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 237 p~d 239 (269)
T 3gk3_A 237 PDE 239 (269)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=289.88 Aligned_cols=214 Identities=18% Similarity=0.220 Sum_probs=183.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHH---cCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAE---SGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~---~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
++++|++|||||++|||+++|++|++ +|++|++++|+.++++++.+++.+..+ +.++.++++|++|+++++++
T Consensus 3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dv~~~~~v~~~ 78 (259)
T 1oaa_A 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQP----DLKVVLAAADLGTEAGVQRL 78 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCT----TSEEEEEECCTTSHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCC----CCeEEEEecCCCCHHHHHHH
Confidence 57789999999999999999999999 899999999999999998888866422 24789999999999999999
Q ss_pred HHHHhc--ccCCcc--EEEEccCCCCC--CCCCc-cChhhHHHHHhhhchHHHHHHHHHhhhhhcC--CCCeEEEEcCCc
Q 022369 139 SEAWNG--RLGPLH--VLINNAGIFSI--GEPQK-FSKDGYEEHMQVNHLAPALLSILLFPSLIRG--SPSRIINVNSVM 209 (298)
Q Consensus 139 ~~~~~~--~~g~id--ilVnnag~~~~--~~~~~-~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~--~~g~Iv~isS~~ 209 (298)
++++.+ .+|++| +||||||+... .++.+ .+.++|++.+++|+.|+++++++++|.|+++ +.|+|||+||.+
T Consensus 79 ~~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~ 158 (259)
T 1oaa_A 79 LSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLC 158 (259)
T ss_dssp HHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGG
T ss_pred HHHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCch
Confidence 999988 778899 99999998643 45667 6899999999999999999999999999887 679999999998
Q ss_pred cccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------hHHHHH
Q 022369 210 HYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------PKIVQA 283 (298)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------~~~~~~ 283 (298)
++.+. ++...|++||+++.+|+++|+.|+ . +|+||+|+||+|+|+|.+.. ++..+.
T Consensus 159 ~~~~~---------------~~~~~Y~asKaa~~~~~~~la~e~-~--~i~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~ 220 (259)
T 1oaa_A 159 ALQPY---------------KGWGLYCAGKAARDMLYQVLAAEE-P--SVRVLSYAPGPLDNDMQQLARETSKDPELRSK 220 (259)
T ss_dssp GTSCC---------------TTCHHHHHHHHHHHHHHHHHHHHC-T--TEEEEEEECCSBSSHHHHHHHHHCSCHHHHHH
T ss_pred hcCCC---------------CCccHHHHHHHHHHHHHHHHHhhC-C--CceEEEecCCCcCcchHHHHhhccCChhHHHH
Confidence 76654 778889999999999999999999 5 39999999999999997543 222333
Q ss_pred HHHhhhhccc-CCCC
Q 022369 284 AYHLIPYFIF-NPQE 297 (298)
Q Consensus 284 ~~~~~p~~~~-~pe~ 297 (298)
+....|++++ +|||
T Consensus 221 ~~~~~p~~~~~~p~d 235 (259)
T 1oaa_A 221 LQKLKSDGALVDCGT 235 (259)
T ss_dssp HHHHHHTTCSBCHHH
T ss_pred HHHhhhcCCcCCHHH
Confidence 4456677776 7764
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=297.59 Aligned_cols=195 Identities=24% Similarity=0.316 Sum_probs=176.8
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC------------chHHHHHHHHHHHhhcCCCCCccEEEEE
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN------------LKAANELIQKWQEEWSGKGLPLNIEAME 126 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (298)
.+.+++||++|||||++|||+++|++|+++|++|++++|+ .+++++..+++.+. +.++.+++
T Consensus 40 ~m~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 113 (317)
T 3oec_A 40 RMNRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQ------GRRIIARQ 113 (317)
T ss_dssp --CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHT------TCCEEEEE
T ss_pred hhhccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhc------CCeEEEEE
Confidence 3557889999999999999999999999999999999886 66777777666542 24799999
Q ss_pred cCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEE
Q 022369 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINV 205 (298)
Q Consensus 127 ~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~i 205 (298)
+|++|+++++++++++.+++|+||+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++ .|+|||+
T Consensus 114 ~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~i 193 (317)
T 3oec_A 114 ADVRDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFV 193 (317)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 999999999999999999999999999999998888889999999999999999999999999999998875 6899999
Q ss_pred cCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 206 NSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 206 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
||.+++.+. ++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++..
T Consensus 194 sS~~~~~~~---------------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~ 247 (317)
T 3oec_A 194 SSTVGLRGA---------------PGQSHYAASKHGVQGLMLSLANEV-GRHNIRVNSVNPGAVNTEMAL 247 (317)
T ss_dssp CCGGGSSCC---------------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSHHHH
T ss_pred CcHHhcCCC---------------CCCcchHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCcccCcccc
Confidence 999876665 778899999999999999999999 888999999999999999864
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=296.56 Aligned_cols=200 Identities=24% Similarity=0.279 Sum_probs=175.9
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
++.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+... ...++.++.+|++|+++++++
T Consensus 20 ~m~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~---~~~~~~~~~~Dv~d~~~v~~~ 96 (297)
T 1xhl_A 20 HMARFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV---PAEKINAVVADVTEASGQDDI 96 (297)
T ss_dssp ---CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEECCTTSHHHHHHH
T ss_pred cccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC---CCceEEEEecCCCCHHHHHHH
Confidence 34468899999999999999999999999999999999999999988888765311 012688999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCC--CCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGE--PQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~--~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
++++.+++|++|+||||||+....+ +.+.+.++|++.+++|+.|+++++++++|.|++++ |+|||+||.++..+.
T Consensus 97 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~-- 173 (297)
T 1xhl_A 97 INTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQA-- 173 (297)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSC--
T ss_pred HHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCC--
Confidence 9999999999999999999876666 78899999999999999999999999999998877 999999998765432
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
.++...|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+..
T Consensus 174 ------------~~~~~~Y~asKaa~~~l~~~la~el-~~~gI~v~~v~PG~v~T~~~~~~ 221 (297)
T 1xhl_A 174 ------------HSGYPYYACAKAALDQYTRCTAIDL-IQHGVRVNSVSPGAVATGFMGAM 221 (297)
T ss_dssp ------------CTTSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSSHHHHT
T ss_pred ------------CCCcchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCCcCcccccc
Confidence 1566789999999999999999999 78899999999999999997543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=295.29 Aligned_cols=195 Identities=22% Similarity=0.344 Sum_probs=181.1
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++... +.++.++++|++|++++++++
T Consensus 26 m~~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dv~d~~~v~~~~ 99 (301)
T 3tjr_A 26 LSGFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ------GFDAHGVVCDVRHLDEMVRLA 99 (301)
T ss_dssp CCCSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHH
T ss_pred HhccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCceEEEEccCCCHHHHHHHH
Confidence 34588999999999999999999999999999999999999999998888763 247899999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+.+|++|+||||||+...+++.+.+.++|++.+++|+.|+++++++++|.|++++ .|+||++||.+++.+.
T Consensus 100 ~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 175 (301)
T 3tjr_A 100 DEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPN---- 175 (301)
T ss_dssp HHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCC----
T ss_pred HHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCC----
Confidence 99999999999999999998888888999999999999999999999999999999876 7899999999877665
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
++...|++||+|+.+|+++|+.|+ .+.||+|++|+||+|+|++.+.
T Consensus 176 -----------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~ 221 (301)
T 3tjr_A 176 -----------AGLGTYGVAKYGVVGLAETLAREV-KPNGIGVSVLCPMVVETKLVSN 221 (301)
T ss_dssp -----------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEECCSCCCSSHHHH
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEECCccccccccc
Confidence 788899999999999999999999 7889999999999999999764
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=291.01 Aligned_cols=215 Identities=24% Similarity=0.304 Sum_probs=191.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEE-EcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++.+|++|||||++|||+++|++|+++|++|+++ +|+.+.+++..+++.+. +.++.++.+|++|++++++++
T Consensus 22 ~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~~~~ 95 (267)
T 4iiu_A 22 SNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVAN------GGNGRLLSFDVANREQCREVL 95 (267)
T ss_dssp ---CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHH
Confidence 45788999999999999999999999999999664 57778888888887664 247899999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhh-cCCCCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLI-RGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~-~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+++|++|+||||||+....++.+.+.++|++.+++|+.|++++++.+++.|. +++.|+||++||.++..+.
T Consensus 96 ~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 171 (267)
T 4iiu_A 96 EHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGN---- 171 (267)
T ss_dssp HHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCC----
T ss_pred HHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCC----
Confidence 99999999999999999998888888999999999999999999999999999987 5678999999999876665
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHHhhhhccc-CCCC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~~~-~pe~ 297 (298)
++...|++||+|+.+|+++|+.|+ .++||+|++|+||+|+|++.+..++..+......|++++ +|||
T Consensus 172 -----------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~p~~~~~~~ed 239 (267)
T 4iiu_A 172 -----------RGQVNYSAAKAGIIGATKALAIEL-AKRKITVNCIAPGLIDTGMIEMEESALKEAMSMIPMKRMGQAEE 239 (267)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSTTCCCCHHHHHHHHHTCTTCSCBCHHH
T ss_pred -----------CCCchhHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEEeeecCCcccccHHHHHHHHhcCCCCCCcCHHH
Confidence 778889999999999999999999 788999999999999999998877777777778888877 6664
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-41 Score=291.50 Aligned_cols=205 Identities=19% Similarity=0.257 Sum_probs=179.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.+..++ .++.++++|++|++++++++++
T Consensus 25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~---------------~~~~~~~~Dv~d~~~v~~~~~~ 89 (260)
T 3un1_A 25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSAD---------------PDIHTVAGDISKPETADRIVRE 89 (260)
T ss_dssp HTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCSS---------------TTEEEEESCTTSHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc---------------CceEEEEccCCCHHHHHHHHHH
Confidence 4678999999999999999999999999999999998654321 2688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+||++||..+..+.
T Consensus 90 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~------- 162 (260)
T 3un1_A 90 GIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPM------- 162 (260)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCB-------
T ss_pred HHHHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCC-------
Confidence 9999999999999999988888899999999999999999999999999999999999999999998764332
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHHhhhhccc-CCCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~~~-~pe~ 297 (298)
+.++...|++||+|+.+|+++++.|+ .++||+||+|+||+|+|++.... ..+......|++++ +|||
T Consensus 163 ------~~~~~~~Y~~sKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~--~~~~~~~~~p~~r~~~~~d 230 (260)
T 3un1_A 163 ------VGMPSALASLTKGGLNAVTRSLAMEF-SRSGVRVNAVSPGVIKTPMHPAE--THSTLAGLHPVGRMGEIRD 230 (260)
T ss_dssp ------TTCCCHHHHHHHHHHHHHHHHHHHHT-TTTTEEEEEEEECCBCCTTSCGG--GHHHHHTTSTTSSCBCHHH
T ss_pred ------CCCccHHHHHHHHHHHHHHHHHHHHh-CcCCeEEEEEeecCCCCCCCCHH--HHHHHhccCCCCCCcCHHH
Confidence 12456789999999999999999999 88999999999999999997643 22334456787777 6654
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=290.20 Aligned_cols=208 Identities=27% Similarity=0.316 Sum_probs=178.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++ +++.+++. . .++++|++|++++++++++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~----------~-~~~~~D~~~~~~~~~~~~~ 70 (256)
T 2d1y_A 3 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIG----------G-AFFQVDLEDERERVRFVEE 70 (256)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHT----------C-EEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhh----------C-CEEEeeCCCHHHHHHHHHH
Confidence 5678999999999999999999999999999999999887 65554431 3 6789999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||..++.+.
T Consensus 71 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~------- 143 (256)
T 2d1y_A 71 AAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE------- 143 (256)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCC-------
Confidence 9999999999999999987778889999999999999999999999999999999888999999999876654
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-------hHHHHHHHHhhhhccc-
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-------PKIVQAAYHLIPYFIF- 293 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-------~~~~~~~~~~~p~~~~- 293 (298)
+....|++||+++++|+++++.|+ .++||+||+|+||+++|++.... ++..+.+....|++++
T Consensus 144 --------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (256)
T 2d1y_A 144 --------QENAAYNASKGGLVNLTRSLALDL-APLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLG 214 (256)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTSTTSSCB
T ss_pred --------CCChhHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEeeCCccCchhhhccccccCCHHHHHHHHhcCCCCCCc
Confidence 677889999999999999999999 78899999999999999986432 1111223334566665
Q ss_pred CCCC
Q 022369 294 NPQE 297 (298)
Q Consensus 294 ~pe~ 297 (298)
+|||
T Consensus 215 ~~~d 218 (256)
T 2d1y_A 215 KPEE 218 (256)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6554
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=296.30 Aligned_cols=214 Identities=25% Similarity=0.292 Sum_probs=182.1
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
..+++||++|||||++|||+++|++|+++|++|++++|+. +..+++.+.+.+. +.++.++++|++|++++++
T Consensus 44 ~~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dv~d~~~v~~ 117 (294)
T 3r3s_A 44 SGRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEEC------GRKAVLLPGDLSDESFARS 117 (294)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHT------TCCEEECCCCTTSHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHc------CCcEEEEEecCCCHHHHHH
Confidence 4568899999999999999999999999999999999873 4455555555442 2478999999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
+++++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.|+++++++++|+|++ +|+|||+||..++.+.
T Consensus 118 ~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~--~g~Iv~isS~~~~~~~-- 193 (294)
T 3r3s_A 118 LVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPK--GASIITTSSIQAYQPS-- 193 (294)
T ss_dssp HHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCT--TCEEEEECCGGGTSCC--
T ss_pred HHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhc--CCEEEEECChhhccCC--
Confidence 99999999999999999999865 456889999999999999999999999999999965 4899999999876665
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC---chHHHHHHHHhhhhccc
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD---LPKIVQAAYHLIPYFIF 293 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~---~~~~~~~~~~~~p~~~~ 293 (298)
+....|++||+|+++|+++|+.|+ .++||+||+|+||+|+|++... ..+..+.+....|++++
T Consensus 194 -------------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~r~ 259 (294)
T 3r3s_A 194 -------------PHLLDYAATKAAILNYSRGLAKQV-AEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRA 259 (294)
T ss_dssp -------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSHHHHTTTSCGGGSTTTTTTSTTSSC
T ss_pred -------------CCchHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCcCccccccccCCCHHHHHHHHhcCCCCCC
Confidence 778889999999999999999999 8889999999999999998321 12223334456777777
Q ss_pred -CCCC
Q 022369 294 -NPQE 297 (298)
Q Consensus 294 -~pe~ 297 (298)
+|||
T Consensus 260 ~~p~d 264 (294)
T 3r3s_A 260 GQPAE 264 (294)
T ss_dssp BCGGG
T ss_pred cCHHH
Confidence 7765
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=293.11 Aligned_cols=197 Identities=25% Similarity=0.307 Sum_probs=174.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+... ...++.++.+|++|++++++++++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~ 79 (280)
T 1xkq_A 3 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV---SEKQVNSVVADVTTEDGQDQIINS 79 (280)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC---CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC---CCcceEEEEecCCCHHHHHHHHHH
Confidence 57789999999999999999999999999999999999998888777754210 012689999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCC----CCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGE----PQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~----~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
+.+++|++|+||||||+....+ +.+.+.++|++.+++|+.++++++++++|.|++++ |+|||+||.++..+.
T Consensus 80 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~--- 155 (280)
T 1xkq_A 80 TLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQA--- 155 (280)
T ss_dssp HHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSC---
T ss_pred HHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCC---
Confidence 9999999999999999876666 77889999999999999999999999999998766 999999998765432
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
.+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+..
T Consensus 156 -----------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~ 203 (280)
T 1xkq_A 156 -----------QPDFLYYAIAKAALDQYTRSTAIDL-AKFGIRVNSVSPGMVETGFTNAM 203 (280)
T ss_dssp -----------CCSSHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCBCSSHHHHT
T ss_pred -----------CCcccHHHHHHHHHHHHHHHHHHHh-ccCCeEEEEEeeCcCcCCccccc
Confidence 1566789999999999999999999 78899999999999999997643
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=291.15 Aligned_cols=213 Identities=26% Similarity=0.351 Sum_probs=183.7
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++++|++|++++++++
T Consensus 7 ~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~d~~~v~~~~ 77 (263)
T 3ak4_A 7 IFDLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLE---------NGGFAVEVDVTKRASVDAAM 77 (263)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCT---------TCCEEEECCTTCHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh---------cCCeEEEEeCCCHHHHHHHH
Confidence 345789999999999999999999999999999999999888776654432 15778999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+++|++|+||||||+....++.+.+.++|++.+++|+.++++++++++|+|++++ .|+||++||..+..+.
T Consensus 78 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 153 (263)
T 3ak4_A 78 QKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGA---- 153 (263)
T ss_dssp HHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC----
T ss_pred HHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCC----
Confidence 99999999999999999998777788999999999999999999999999999999877 7999999998866554
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch------------HHHHHHHH
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP------------KIVQAAYH 286 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~------------~~~~~~~~ 286 (298)
+....|++||+++++|+++++.|+ .++||+||+|+||+|+|++.+... +..+.+..
T Consensus 154 -----------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (263)
T 3ak4_A 154 -----------PLLAHYSASKFAVFGWTQALAREM-APKNIRVNCVCPGFVKTAMQEREIIWEAELRGMTPEAVRAEYVS 221 (263)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBTTHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred -----------CCchhHHHHHHHHHHHHHHHHHHH-hHcCeEEEEEecccccChhhhhhccccccccccCcHHHHHHHHh
Confidence 677889999999999999999999 788999999999999999865431 22233344
Q ss_pred hhhhccc-CCCC
Q 022369 287 LIPYFIF-NPQE 297 (298)
Q Consensus 287 ~~p~~~~-~pe~ 297 (298)
..|++++ +|||
T Consensus 222 ~~p~~~~~~~~d 233 (263)
T 3ak4_A 222 LTPLGRIEEPED 233 (263)
T ss_dssp TCTTCSCBCHHH
T ss_pred cCCCCCCcCHHH
Confidence 5677766 6654
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=289.84 Aligned_cols=190 Identities=25% Similarity=0.344 Sum_probs=171.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+++|++|||||++|||+++|++|+++|++|++++|+.+ ++..+++.+. +.++.++.+|++|+++++++++++
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~------~~~~~~~~~D~~~~~~v~~~~~~~ 73 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARH------GVKAVHHPADLSDVAQIEALFALA 73 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTT------SCCEEEECCCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhc------CCceEEEeCCCCCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999876 4455555431 246889999999999999999999
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||.+++.+.
T Consensus 74 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-------- 145 (255)
T 2q2v_A 74 EREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGS-------- 145 (255)
T ss_dssp HHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC--------
T ss_pred HHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCC--------
Confidence 999999999999999987777888999999999999999999999999999998888999999999876654
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+.
T Consensus 146 -------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~ 191 (255)
T 2q2v_A 146 -------TGKAAYVAAKHGVVGLTKVVGLET-ATSNVTCNAICPGWVLTPLVQK 191 (255)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHHT-TTSSEEEEEEEESSBCCHHHHH
T ss_pred -------CCchhHHHHHHHHHHHHHHHHHHh-cccCcEEEEEeeCCCcCcchhh
Confidence 677889999999999999999999 7889999999999999998654
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=290.48 Aligned_cols=216 Identities=24% Similarity=0.322 Sum_probs=174.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++..... .+.++.++.+|++|++++++++++
T Consensus 3 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~ 79 (278)
T 1spx_A 3 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV---SEQNVNSVVADVTTDAGQDEILST 79 (278)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccc---CCCceeEEecccCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999999998888777643211 124789999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCcc----ChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcc-ccCCCC
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKF----SKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMH-YVGFVD 216 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~----~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~-~~~~~~ 216 (298)
+.+++|++|+||||||+....++.+. +.++|++.+++|+.|+++++++++|.|++++ |+|||+||..+ +.+.
T Consensus 80 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~-- 156 (278)
T 1spx_A 80 TLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHAT-- 156 (278)
T ss_dssp HHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCC--
T ss_pred HHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccccccCC--
Confidence 99999999999999998776677777 9999999999999999999999999998766 99999999986 5443
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc----hHH------HHHHHH
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL----PKI------VQAAYH 286 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~----~~~------~~~~~~ 286 (298)
+....|++||+++++|+++++.|+ .++||+||+|+||+|+|++.... +.. .+....
T Consensus 157 -------------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (278)
T 1spx_A 157 -------------PDFPYYSIAKAAIDQYTRNTAIDL-IQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKE 222 (278)
T ss_dssp -------------TTSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCCCC--------------HHHHHHHHH
T ss_pred -------------CCccHHHHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcccCccccccccCchhhhhhhHHHHHHHh
Confidence 677889999999999999999999 78899999999999999997542 111 233334
Q ss_pred hhhhccc-CCCC
Q 022369 287 LIPYFIF-NPQE 297 (298)
Q Consensus 287 ~~p~~~~-~pe~ 297 (298)
..|++++ +|||
T Consensus 223 ~~p~~~~~~~~d 234 (278)
T 1spx_A 223 CVPAGVMGQPQD 234 (278)
T ss_dssp HCTTSSCBCHHH
T ss_pred cCCCcCCCCHHH
Confidence 5677666 6654
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-40 Score=294.62 Aligned_cols=198 Identities=23% Similarity=0.307 Sum_probs=177.0
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++..... +.++.++.+|++|++++++++
T Consensus 3 m~~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dl~~~~~v~~~~ 78 (319)
T 3ioy_A 3 LKDFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGS----GPEVMGVQLDVASREGFKMAA 78 (319)
T ss_dssp CCCCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC----GGGEEEEECCTTCHHHHHHHH
T ss_pred ccCCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----CCeEEEEECCCCCHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999888876422 237999999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC------CCCeEEEEcCCccccC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG------SPSRIINVNSVMHYVG 213 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~------~~g~Iv~isS~~~~~~ 213 (298)
+++.+.+|++|+||||||+...+++.+.+.++|++.+++|+.|+++++++++|.|.++ +.|+||++||.+++.+
T Consensus 79 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~ 158 (319)
T 3ioy_A 79 DEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLA 158 (319)
T ss_dssp HHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCC
T ss_pred HHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccC
Confidence 9999999999999999999888889999999999999999999999999999999875 5799999999987776
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
. +....|++||+|+.+|+++|+.|+ .+.||+|++|+||+|+|++....
T Consensus 159 ~---------------~~~~~Y~aSKaal~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~ 206 (319)
T 3ioy_A 159 A---------------GSPGIYNTTKFAVRGLSESLHYSL-LKYEIGVSVLCPGLVKSYIYASD 206 (319)
T ss_dssp C---------------SSSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEECCCCBC-------
T ss_pred C---------------CCCHHHHHHHHHHHHHHHHHHHHh-hhcCCEEEEEEcCeEccCccccc
Confidence 5 777889999999999999999999 77899999999999999997643
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=294.53 Aligned_cols=208 Identities=22% Similarity=0.290 Sum_probs=170.6
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.++..+ ++ +.++.++++|++|+++++++++
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~---~~---------~~~~~~~~~D~~~~~~v~~~~~ 72 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVVA---DL---------GDRARFAAADVTDEAAVASALD 72 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHHH---HT---------CTTEEEEECCTTCHHHHHHHHH
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHHH---hc---------CCceEEEECCCCCHHHHHHHHH
Confidence 35789999999999999999999999999999999997654322 21 2378999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCC----CCccChhhHHHHHhhhchHHHHHHHHHhhhhhc--------CCCCeEEEEcCC
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGE----PQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR--------GSPSRIINVNSV 208 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~----~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~--------~~~g~Iv~isS~ 208 (298)
.+.+ +|++|+||||||+....+ ..+.+.++|++.+++|+.|+++++++++|+|++ ++.|+|||+||.
T Consensus 73 ~~~~-~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~ 151 (257)
T 3tl3_A 73 LAET-MGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASV 151 (257)
T ss_dssp HHHH-HSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCC
T ss_pred HHHH-hCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcch
Confidence 9887 899999999999865332 235799999999999999999999999999998 678899999999
Q ss_pred ccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHH-HHHHHh
Q 022369 209 MHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIV-QAAYHL 287 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~-~~~~~~ 287 (298)
+++.+. ++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|+|.+..++.. +.....
T Consensus 152 ~~~~~~---------------~~~~~Y~asKaa~~~~~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~ 215 (257)
T 3tl3_A 152 AAFDGQ---------------IGQAAYSASKGGVVGMTLPIARDL-ASHRIRVMTIAPGLFDTPLLASLPEEARASLGKQ 215 (257)
T ss_dssp C--CCH---------------HHHHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTC---CHHHHHHHHHT
T ss_pred hhcCCC---------------CCCccHHHHHHHHHHHHHHHHHHh-cccCcEEEEEEecCccChhhhhccHHHHHHHHhc
Confidence 877655 677889999999999999999999 788999999999999999998765443 344456
Q ss_pred hhh-ccc-CCCC
Q 022369 288 IPY-FIF-NPQE 297 (298)
Q Consensus 288 ~p~-~~~-~pe~ 297 (298)
.|. +++ +|||
T Consensus 216 ~~~~~r~~~p~d 227 (257)
T 3tl3_A 216 VPHPSRLGNPDE 227 (257)
T ss_dssp SSSSCSCBCHHH
T ss_pred CCCCCCccCHHH
Confidence 776 666 6664
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-41 Score=296.04 Aligned_cols=205 Identities=23% Similarity=0.268 Sum_probs=178.2
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+.+++||++|||||++|||+++|++|+++|++|++++|+.+.++ ....+.+|++|.+++++++
T Consensus 23 m~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~-----------------~~~~~~~Dv~~~~~~~~~~ 85 (266)
T 3uxy_A 23 MQGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA-----------------ADLHLPGDLREAAYADGLP 85 (266)
T ss_dssp ---CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC-----------------CSEECCCCTTSHHHHHHHH
T ss_pred hhCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-----------------hhhccCcCCCCHHHHHHHH
Confidence 45788999999999999999999999999999999999865432 1234589999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+.+|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..++.+.
T Consensus 86 ~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~----- 160 (266)
T 3uxy_A 86 GAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPG----- 160 (266)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCC-----
T ss_pred HHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCC-----
Confidence 999999999999999999988888899999999999999999999999999999999889999999999876655
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch--------HHHHHHHHhhhhc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP--------KIVQAAYHLIPYF 291 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~--------~~~~~~~~~~p~~ 291 (298)
++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+... +..+......|++
T Consensus 161 ----------~~~~~Y~asKaa~~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 229 (266)
T 3uxy_A 161 ----------PGHALYCLTKAALASLTQCMGMDH-APQGIRINAVCPNEVNTPMLRTGFAKRGFDPDRAVAELGRTVPLG 229 (266)
T ss_dssp ----------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCCHHHHHHHHHTTCCHHHHHHHHHTTSTTS
T ss_pred ----------CCChHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeeCCCcchHhhhhhhcccccchHHHHHHHhcCCCC
Confidence 778899999999999999999999 788999999999999999865321 1224455577887
Q ss_pred cc-CCCC
Q 022369 292 IF-NPQE 297 (298)
Q Consensus 292 ~~-~pe~ 297 (298)
++ +|||
T Consensus 230 r~~~ped 236 (266)
T 3uxy_A 230 RIAEPED 236 (266)
T ss_dssp SCBCHHH
T ss_pred CCcCHHH
Confidence 77 6664
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-40 Score=287.12 Aligned_cols=217 Identities=14% Similarity=0.154 Sum_probs=178.3
Q ss_pred CCCCCCCCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHH
Q 022369 56 NPLPLPPVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLD 133 (298)
Q Consensus 56 ~~~~~~~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 133 (298)
.+.+..++++|++|||||+ +|||+++|++|+++|++|++++|+....+ ..+++.+..+ .+.++++|++|++
T Consensus 5 ~~~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~------~~~~~~~Dv~~~~ 77 (271)
T 3ek2_A 5 HHHHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKD-RITEFAAEFG------SELVFPCDVADDA 77 (271)
T ss_dssp ----CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHHHHHHTT------CCCEEECCTTCHH
T ss_pred CCCCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHH-HHHHHHHHcC------CcEEEECCCCCHH
Confidence 3445668899999999999 99999999999999999999999954443 3444444322 4788999999999
Q ss_pred HHHHHHHHHhcccCCccEEEEccCCCCC----CCCCc-cChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCC
Q 022369 134 SVVRFSEAWNGRLGPLHVLINNAGIFSI----GEPQK-FSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSV 208 (298)
Q Consensus 134 ~v~~~~~~~~~~~g~idilVnnag~~~~----~~~~~-~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~ 208 (298)
+++++++++.+++|++|+||||||+... .++.+ .+.++|++.+++|+.++++++++++|.|++ .|+||++||.
T Consensus 78 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~g~iv~isS~ 155 (271)
T 3ek2_A 78 QIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSD--DASLLTLSYL 155 (271)
T ss_dssp HHHHHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEE--EEEEEEEECG
T ss_pred HHHHHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhcc--CceEEEEecc
Confidence 9999999999999999999999998764 55565 899999999999999999999999999975 5799999999
Q ss_pred ccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHH
Q 022369 209 MHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAY 285 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~ 285 (298)
++..+. +....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|+|.+... +..+.+.
T Consensus 156 ~~~~~~---------------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~ 219 (271)
T 3ek2_A 156 GAERAI---------------PNYNTMGLAKAALEASVRYLAVSL-GAKGVRVNAISAGPIKTLAASGIKSFGKILDFVE 219 (271)
T ss_dssp GGTSBC---------------TTTTHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCC-----CCCHHHHHHHHHHH
T ss_pred ccccCC---------------CCccchhHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCcccchhhhcccchHHHHHHHH
Confidence 876655 778899999999999999999999 888999999999999999988764 3334455
Q ss_pred Hhhhhccc-CCCC
Q 022369 286 HLIPYFIF-NPQE 297 (298)
Q Consensus 286 ~~~p~~~~-~pe~ 297 (298)
...|++++ +|||
T Consensus 220 ~~~~~~~~~~ped 232 (271)
T 3ek2_A 220 SNSPLKRNVTIEQ 232 (271)
T ss_dssp HHSTTSSCCCHHH
T ss_pred hcCCcCCCCCHHH
Confidence 57787776 6664
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-40 Score=289.09 Aligned_cols=213 Identities=20% Similarity=0.180 Sum_probs=177.4
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH----HHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSL----DSV 135 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~----~~v 135 (298)
.++++|++|||||++|||+++|++|+++|++|++++| +.++++++.+++.+... .++.++.+|++|+ +++
T Consensus 7 ~~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~ 81 (276)
T 1mxh_A 7 EASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA-----GSAVLCKGDLSLSSSLLDCC 81 (276)
T ss_dssp ----CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-----TCEEEEECCCSSSTTHHHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcC-----CceEEEeccCCCccccHHHH
Confidence 3467899999999999999999999999999999999 98888888888765311 3688999999999 999
Q ss_pred HHHHHHHhcccCCccEEEEccCCCCCCCCCccCh-----------hhHHHHHhhhchHHHHHHHHHhhhhhcCCC-----
Q 022369 136 VRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSK-----------DGYEEHMQVNHLAPALLSILLFPSLIRGSP----- 199 (298)
Q Consensus 136 ~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~-----------~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~----- 199 (298)
+++++++.+++|++|+||||||+....++.+.+. ++|++.+++|+.|+++++++++|.|+ ++.
T Consensus 82 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~~~~~~~ 160 (276)
T 1mxh_A 82 EDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQG-EGGAWRSR 160 (276)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC--------CC
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHh-cCCCCCCC
Confidence 9999999999999999999999987777788888 99999999999999999999999998 555
Q ss_pred -CeEEEEcCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch
Q 022369 200 -SRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278 (298)
Q Consensus 200 -g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~ 278 (298)
|+|||+||..++.+. ++...|++||+++.+|+++|+.|+ .++||+||+|+||+|+|+ ...+
T Consensus 161 ~g~iv~isS~~~~~~~---------------~~~~~Y~asK~a~~~l~~~la~e~-~~~gi~v~~v~PG~v~t~--~~~~ 222 (276)
T 1mxh_A 161 NLSVVNLCDAMTDLPL---------------PGFCVYTMAKHALGGLTRAAALEL-APRHIRVNAVAPGLSLLP--PAMP 222 (276)
T ss_dssp CEEEEEECCGGGGSCC---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBSCC--SSSC
T ss_pred CcEEEEECchhhcCCC---------------CCCeehHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCcccCC--ccCC
Confidence 899999999876654 777889999999999999999999 788999999999999999 3333
Q ss_pred -HHHHHHHHhhhhcc-c-CCCC
Q 022369 279 -KIVQAAYHLIPYFI-F-NPQE 297 (298)
Q Consensus 279 -~~~~~~~~~~p~~~-~-~pe~ 297 (298)
+..+.+....|+.+ + +|||
T Consensus 223 ~~~~~~~~~~~p~~r~~~~~~d 244 (276)
T 1mxh_A 223 QETQEEYRRKVPLGQSEASAAQ 244 (276)
T ss_dssp HHHHHHHHTTCTTTSCCBCHHH
T ss_pred HHHHHHHHhcCCCCCCCCCHHH
Confidence 33344444667776 5 6654
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-41 Score=291.03 Aligned_cols=210 Identities=23% Similarity=0.350 Sum_probs=168.7
Q ss_pred cCCCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHH
Q 022369 55 QNPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDS 134 (298)
Q Consensus 55 ~~~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 134 (298)
..+.+..++++|++|||||++|||+++|++|+++|++|++++|+.++++ .+.++++|++|+++
T Consensus 11 ~~~~~~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~-----------------~~~~~~~Dl~d~~~ 73 (253)
T 2nm0_A 11 SSGLVPRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE-----------------GFLAVKCDITDTEQ 73 (253)
T ss_dssp ---------CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT-----------------TSEEEECCTTSHHH
T ss_pred CCCCCccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc-----------------cceEEEecCCCHHH
Confidence 3456667888999999999999999999999999999999999865432 26788999999999
Q ss_pred HHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC
Q 022369 135 VVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 135 v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~ 214 (298)
++++++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||.++..+.
T Consensus 74 v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~ 153 (253)
T 2nm0_A 74 VEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGS 153 (253)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCH
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCC
Confidence 99999999999999999999999987778888999999999999999999999999999998888999999999876554
Q ss_pred CCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHHhhhhccc
Q 022369 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYHLIPYFIF 293 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~p~~~~ 293 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+...+. .+.+....|+.++
T Consensus 154 ---------------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~p~~~~ 217 (253)
T 2nm0_A 154 ---------------AGQANYAASKAGLVGFARSLAREL-GSRNITFNVVAPGFVDTDMTKVLTDEQRANIVSQVPLGRY 217 (253)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHH-CSSSEEEEEEEECSBCC---------CHHHHHTTCTTCSC
T ss_pred ---------------CCcHHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCcCcCcchhhcCHHHHHHHHhcCCCCCC
Confidence 567789999999999999999999 78899999999999999997654322 2333345676665
Q ss_pred -CCCC
Q 022369 294 -NPQE 297 (298)
Q Consensus 294 -~pe~ 297 (298)
+|||
T Consensus 218 ~~p~d 222 (253)
T 2nm0_A 218 ARPEE 222 (253)
T ss_dssp BCHHH
T ss_pred cCHHH
Confidence 6654
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-40 Score=287.94 Aligned_cols=196 Identities=21% Similarity=0.294 Sum_probs=172.1
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC------------chHHHHHHHHHHHhhcCCCCCccEEEEE
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN------------LKAANELIQKWQEEWSGKGLPLNIEAME 126 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (298)
+..+++||++|||||++|||+++|++|+++|++|++++|+ .+++++..+++... +.++.+++
T Consensus 7 ~~~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 80 (278)
T 3sx2_A 7 SEGPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDI------GSRIVARQ 80 (278)
T ss_dssp --CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHH------TCCEEEEE
T ss_pred CCCCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhc------CCeEEEEe
Confidence 3457889999999999999999999999999999999987 67777777776553 24799999
Q ss_pred cCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEE
Q 022369 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINV 205 (298)
Q Consensus 127 ~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~i 205 (298)
+|++|+++++++++++.+++|++|+||||||+..... +.++|++.+++|+.|+++++++++|+|++++ .|+|||+
T Consensus 81 ~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~i 156 (278)
T 3sx2_A 81 ADVRDRESLSAALQAGLDELGRLDIVVANAGIAPMSA----GDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLI 156 (278)
T ss_dssp CCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSS----THHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC----CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 9999999999999999999999999999999865332 5899999999999999999999999998865 7899999
Q ss_pred cCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 206 NSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 206 sS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
||.+++.+. ..+.++...|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|+|.+.
T Consensus 157 sS~~~~~~~-----------~~~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~ 215 (278)
T 3sx2_A 157 SSSAGLAGV-----------GSADPGSVGYVAAKHGVVGLMRVYANLL-AGQMIRVNSIHPSGVETPMINN 215 (278)
T ss_dssp CCGGGTSCC-----------CCSSHHHHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCBSSTTTSS
T ss_pred ccHHhcCCC-----------ccCCCCchHhHHHHHHHHHHHHHHHHHH-hccCcEEEEEecCCccCccchh
Confidence 999876653 1122566789999999999999999999 8889999999999999999875
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=287.68 Aligned_cols=212 Identities=14% Similarity=0.179 Sum_probs=179.4
Q ss_pred CCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+++||++|||||+ +|||+++|++|+++|++|++++|+.+ .++..+++.+..+ .+.++.+|++|++++++++
T Consensus 18 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~------~~~~~~~Dl~~~~~v~~~~ 90 (285)
T 2p91_A 18 LLEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFG------SDLVVKCDVSLDEDIKNLK 90 (285)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTT------CCCEEECCTTCHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcC------CeEEEEcCCCCHHHHHHHH
Confidence 4889999999999 99999999999999999999999985 4555555554321 3678899999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCC----CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSI----GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++.+++|++|+||||||+... .++.+.+.++|++.+++|+.|+++++++++|.|+++ +|+|||+||..+..+.
T Consensus 91 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~~- 168 (285)
T 2p91_A 91 KFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGR-NGAIVTLSYYGAEKVV- 168 (285)
T ss_dssp HHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTS-CCEEEEEECGGGTSBC-
T ss_pred HHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCEEEEEccchhccCC-
Confidence 9999999999999999998753 567789999999999999999999999999999864 5899999998766554
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhhcc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPYFI 292 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~~~ 292 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+... +..+.+....|+.+
T Consensus 169 --------------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~~ 233 (285)
T 2p91_A 169 --------------PHYNVMGIAKAALESTVRYLAYDI-AKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPFGK 233 (285)
T ss_dssp --------------TTTTHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCSCC--CTTHHHHHHHHHHHSTTSS
T ss_pred --------------CCccHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEEeCcccCchhhcccchHHHHHHHHhcCCCCC
Confidence 677889999999999999999999 788999999999999999976542 33334444667776
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 234 ~~~~~d 239 (285)
T 2p91_A 234 PITIED 239 (285)
T ss_dssp CCCHHH
T ss_pred CcCHHH
Confidence 6 6654
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-40 Score=285.81 Aligned_cols=213 Identities=24% Similarity=0.346 Sum_probs=166.9
Q ss_pred CCCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHH
Q 022369 56 NPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSV 135 (298)
Q Consensus 56 ~~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v 135 (298)
.+.+..+.++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++.+|+++.+++
T Consensus 5 ~~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~~ 75 (249)
T 3f9i_A 5 HHHHMIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK---------DNYTIEVCNLANKEEC 75 (249)
T ss_dssp ----CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------SSEEEEECCTTSHHHH
T ss_pred CccccccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc---------cCccEEEcCCCCHHHH
Confidence 4555678899999999999999999999999999999999999998888876653 2688999999999999
Q ss_pred HHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 136 VRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 136 ~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
++++++ ++++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+||++||.+++.+.
T Consensus 76 ~~~~~~----~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~- 150 (249)
T 3f9i_A 76 SNLISK----TSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGN- 150 (249)
T ss_dssp HHHHHT----CSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CC-
T ss_pred HHHHHh----cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCC-
Confidence 888765 478999999999988777888899999999999999999999999999999888999999999877665
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHHhhhhccc-
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYHLIPYFIF- 293 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~p~~~~- 293 (298)
++...|++||+|+.+|+++++.|+ .++||+|++|+||+|+|++.+...+. .+......|++++
T Consensus 151 --------------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~ 215 (249)
T 3f9i_A 151 --------------PGQANYCASKAGLIGMTKSLSYEV-ATRGITVNAVAPGFIKSDMTDKLNEKQREAIVQKIPLGTYG 215 (249)
T ss_dssp --------------SCSHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBC------CCHHHHHHHHHHCTTCSCB
T ss_pred --------------CCCchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEecCccccCcccccCHHHHHHHHhcCCCCCCc
Confidence 778889999999999999999999 78899999999999999998876543 3445557777776
Q ss_pred CCCC
Q 022369 294 NPQE 297 (298)
Q Consensus 294 ~pe~ 297 (298)
+|||
T Consensus 216 ~~~d 219 (249)
T 3f9i_A 216 IPED 219 (249)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 5553
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-40 Score=283.88 Aligned_cols=185 Identities=22% Similarity=0.356 Sum_probs=165.7
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++.+|++|+++++++++++.++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~~~~~ 71 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG---------DNLYIAQLDVRNRAAIEEMLASLPAE 71 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------TTEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---------CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999988887766652 26889999999999999999999999
Q ss_pred cCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 146 LGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 146 ~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
+|++|+||||||+.. ..++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||.++..+.
T Consensus 72 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~---------- 141 (248)
T 3asu_A 72 WCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPY---------- 141 (248)
T ss_dssp TCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC----------
T ss_pred CCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccCC----------
Confidence 999999999999863 567788999999999999999999999999999998888999999999866554
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccc-cCccC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVS-TNVAR 275 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~-T~~~~ 275 (298)
++...|++||+++.+|+++|+.|+ .++||+||+|+||+|+ |+|..
T Consensus 142 -----~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~gT~~~~ 187 (248)
T 3asu_A 142 -----AGGNVYGATKAFVRQFSLNLRTDL-HGTAVRVTDIEPGLVGGTEFSN 187 (248)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHT-TTSCCEEEEEEECSBCC-----
T ss_pred -----CCCchHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeccccccCcchh
Confidence 777889999999999999999999 8889999999999999 99865
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=280.75 Aligned_cols=196 Identities=22% Similarity=0.279 Sum_probs=176.6
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCC--CCHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL--LSLDSVV 136 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~--s~~~~v~ 136 (298)
+..+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+... ..+.++.+|+ +++++++
T Consensus 8 ~~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~d~d~~~~~~~~ 82 (247)
T 3i1j_A 8 HPELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQ-----PQPLIIALNLENATAQQYR 82 (247)
T ss_dssp CTTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTS-----CCCEEEECCTTTCCHHHHH
T ss_pred CCccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCC-----CCceEEEeccccCCHHHHH
Confidence 34578899999999999999999999999999999999999999999888876432 2456666666 9999999
Q ss_pred HHHHHHhcccCCccEEEEccCCC-CCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIF-SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
++++++.+.+|++|+||||||+. ...++.+.+.++|++.+++|+.|+++++++++|+|++++.|+||++||..+..+.
T Consensus 83 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~- 161 (247)
T 3i1j_A 83 ELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGR- 161 (247)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSCC-
T ss_pred HHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCCC-
Confidence 99999999999999999999985 4567889999999999999999999999999999999888999999999876655
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCC-CCcEEEEeeCCccccCccC
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAE-SGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~-~gI~v~~v~Pg~v~T~~~~ 275 (298)
++...|++||+|+.+|+++|+.|+ .+ .||+||+|+||+|+|+|.+
T Consensus 162 --------------~~~~~Y~~sK~a~~~~~~~la~e~-~~~~~i~v~~v~PG~v~t~~~~ 207 (247)
T 3i1j_A 162 --------------ANWGAYGVSKFATEGLMQTLADEL-EGVTAVRANSINPGATRTGMRA 207 (247)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHHHHH-TTTSSEEEEEEECCCCSSHHHH
T ss_pred --------------CCcchhHHHHHHHHHHHHHHHHHh-cCCCCeEEEEEecCcccCccch
Confidence 778899999999999999999999 55 7999999999999999853
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-40 Score=288.18 Aligned_cols=211 Identities=16% Similarity=0.148 Sum_probs=180.8
Q ss_pred CCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+++||++|||||+ +|||+++|++|+++|++|++++|+.+ .++..+++.+..+ .+.++++|++|++++++++
T Consensus 3 ~l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~------~~~~~~~D~~~~~~v~~~~ 75 (275)
T 2pd4_A 3 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELN------SPYVYELDVSKEEHFKSLY 75 (275)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTT------CCCEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcC------CcEEEEcCCCCHHHHHHHH
Confidence 4678999999999 99999999999999999999999986 5555555554321 3678999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCC----CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSI----GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++.+++|++|+||||||+... .++.+.+.++|++.+++|+.|+++++++++|.|++ +|+|||+||..+..+.
T Consensus 76 ~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~iv~isS~~~~~~~- 152 (275)
T 2pd4_A 76 NSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN--GASVLTLSYLGSTKYM- 152 (275)
T ss_dssp HHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEEECGGGTSBC-
T ss_pred HHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc--CCEEEEEecchhcCCC-
Confidence 9999999999999999998754 56778999999999999999999999999999975 4899999998766554
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhhcc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPYFI 292 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~~~ 292 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+... +..+.+....|+.+
T Consensus 153 --------------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~~ 217 (275)
T 2pd4_A 153 --------------AHYNVMGLAKAALESAVRYLAVDL-GKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRK 217 (275)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSS
T ss_pred --------------CCchhhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCccccchhhhccccHHHHHHHHhcCCcCC
Confidence 677889999999999999999999 788999999999999999977542 33334445677776
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 218 ~~~p~d 223 (275)
T 2pd4_A 218 NVSLEE 223 (275)
T ss_dssp CCCHHH
T ss_pred CCCHHH
Confidence 6 6664
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-40 Score=285.94 Aligned_cols=216 Identities=19% Similarity=0.246 Sum_probs=175.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+.+|++|||||++|||+++|++|+++|++|++++|+.+...+..++..+.. +.++.++++|++|+++++++++++
T Consensus 5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~ 79 (264)
T 3i4f_A 5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDV-----EERLQFVQADVTKKEDLHKIVEEA 79 (264)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGG-----GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc-----CCceEEEEecCCCHHHHHHHHHHH
Confidence 457999999999999999999999999999999887665444433332221 247999999999999999999999
Q ss_pred hcccCCccEEEEccC--CCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 143 NGRLGPLHVLINNAG--IFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 143 ~~~~g~idilVnnag--~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
.+++|++|+|||||| .....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+||++||....
T Consensus 80 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~--------- 150 (264)
T 3i4f_A 80 MSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGAD--------- 150 (264)
T ss_dssp HHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGG---------
T ss_pred HHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhc---------
Confidence 999999999999999 445567888999999999999999999999999999999888999999997321
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHH-HHHHhhhhccc-CCCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQ-AAYHLIPYFIF-NPQE 297 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~-~~~~~~p~~~~-~pe~ 297 (298)
...+.++...|++||+|+.+|+++|+.|+ .++||+|++|+||+|+|++.+...+... ......|++++ +|||
T Consensus 151 ----~~~~~~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~r~~~~~d 224 (264)
T 3i4f_A 151 ----SAPGWIYRSAFAAAKVGLVSLTKTVAYEE-AEYGITANMVCPGDIIGEMKEATIQEARQLKEHNTPIGRSGTGED 224 (264)
T ss_dssp ----GCCCCTTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCGGGGSCCHHHHHHC--------CCCCHHH
T ss_pred ----ccCCCCCCchhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEccCCccCccchhccHHHHHHHhhcCCCCCCcCHHH
Confidence 12233677889999999999999999999 7889999999999999999987754332 33346677776 6654
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-40 Score=291.92 Aligned_cols=206 Identities=23% Similarity=0.288 Sum_probs=174.9
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC------------chHHHHHHHHHHHhhcCCCCCccEEE
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN------------LKAANELIQKWQEEWSGKGLPLNIEA 124 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (298)
|.++.+++||++|||||++|||+++|++|+++|++|++++|+ .+++++..+++... +.++.+
T Consensus 2 p~~m~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 75 (287)
T 3pxx_A 2 PGSMGRVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKT------GRKAYT 75 (287)
T ss_dssp TTSCCTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHT------TSCEEE
T ss_pred CCcccccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhc------CCceEE
Confidence 345668899999999999999999999999999999999998 66777776666542 247999
Q ss_pred EEcCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEE
Q 022369 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIIN 204 (298)
Q Consensus 125 ~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~ 204 (298)
+++|++|+++++++++++.+++|++|+||||||+.... .+.+.++|++.+++|+.|+++++++++|+| ++.|+||+
T Consensus 76 ~~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~--~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~--~~~g~iv~ 151 (287)
T 3pxx_A 76 AEVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLG--AHLPVQAFADAFDVDFVGVINTVHAALPYL--TSGASIIT 151 (287)
T ss_dssp EECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCC--TTCCTHHHHHHHHHHTHHHHHHHHHHGGGC--CTTCEEEE
T ss_pred EEccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCccc--CcCCHHHHHHHhhhhhhhhHHHHHHHHHHh--hcCcEEEE
Confidence 99999999999999999999999999999999987654 347899999999999999999999999999 34689999
Q ss_pred EcCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 205 VNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 205 isS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+||..++.+....+. ....+.++...|++||+++.+|+++|+.|+ .++||+||+|+||+|+|+|.+..
T Consensus 152 isS~~~~~~~~~~~~----~~~~~~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~ 219 (287)
T 3pxx_A 152 TGSVAGLIAAAQPPG----AGGPQGPGGAGYSYAKQLVDSYTLQLAAQL-APQSIRANVIHPTNVNTDMLNSA 219 (287)
T ss_dssp ECCHHHHHHHHCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEESSBSSTTTSSH
T ss_pred eccchhccccccccc----ccccCCCccchHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCcccccccccc
Confidence 999987765422111 112233567789999999999999999999 88899999999999999998753
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=288.01 Aligned_cols=216 Identities=14% Similarity=0.136 Sum_probs=182.3
Q ss_pred CCCCCCCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHH
Q 022369 57 PLPLPPVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDS 134 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 134 (298)
...+.++++|++|||||+ +|||+++|++|+++|++|++++|+. .++..+++.+.. .++.++.+|++|+++
T Consensus 18 ~~~M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~~------~~~~~~~~Dl~~~~~ 89 (280)
T 3nrc_A 18 GSHMGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAEF------NPAAVLPCDVISDQE 89 (280)
T ss_dssp ----CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGGG------CCSEEEECCTTCHHH
T ss_pred CCcccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHhc------CCceEEEeecCCHHH
Confidence 344567889999999988 8899999999999999999999997 344445554432 257899999999999
Q ss_pred HHHHHHHHhcccCCccEEEEccCCCCC----CCCCc-cChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 022369 135 VVRFSEAWNGRLGPLHVLINNAGIFSI----GEPQK-FSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM 209 (298)
Q Consensus 135 v~~~~~~~~~~~g~idilVnnag~~~~----~~~~~-~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~ 209 (298)
++++++++.+.+|++|+||||||+... .++.+ .+.++|++.+++|+.++++++++++|.|+++ .|+||++||.+
T Consensus 90 v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~g~iv~isS~~ 168 (280)
T 3nrc_A 90 IKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNR-NASMVALTYIG 168 (280)
T ss_dssp HHHHHHHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-TCEEEEEECGG
T ss_pred HHHHHHHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEEeccc
Confidence 999999999999999999999998754 44455 8999999999999999999999999999876 69999999998
Q ss_pred cccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHH
Q 022369 210 HYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYH 286 (298)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~ 286 (298)
++.+. +....|++||+|+.+|+++|+.|+ .++||+|++|+||+|+|++.+... +..+....
T Consensus 169 ~~~~~---------------~~~~~Y~asKaal~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~ 232 (280)
T 3nrc_A 169 AEKAM---------------PSYNTMGVAKASLEATVRYTALAL-GEDGIKVNAVSAGPIKTLAASGISNFKKMLDYNAM 232 (280)
T ss_dssp GTSCC---------------TTTHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCCCCSGGGGCTTHHHHHHHHHH
T ss_pred cccCC---------------CCchhhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEeeccccchhhhcCcchHHHHHHHHh
Confidence 76655 788899999999999999999999 788999999999999999987654 33444555
Q ss_pred hhhhccc-CCCC
Q 022369 287 LIPYFIF-NPQE 297 (298)
Q Consensus 287 ~~p~~~~-~pe~ 297 (298)
..|.+++ +|||
T Consensus 233 ~~p~~~~~~ped 244 (280)
T 3nrc_A 233 VSPLKKNVDIME 244 (280)
T ss_dssp HSTTCSCCCHHH
T ss_pred cCCCCCCCCHHH
Confidence 7777776 6654
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=294.81 Aligned_cols=196 Identities=18% Similarity=0.240 Sum_probs=176.1
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH-------HHHHHHHHHHhhcCCCCCccEEEEEcCCCC
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA-------ANELIQKWQEEWSGKGLPLNIEAMELDLLS 131 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~ 131 (298)
...+++||++|||||++|||+++|++|+++|++|++++|+.++ +++..+++.+. +.++.++++|++|
T Consensus 39 ~~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~------g~~~~~~~~Dv~d 112 (346)
T 3kvo_A 39 NTGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAV------GGKALPCIVDVRD 112 (346)
T ss_dssp CCSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHT------TCEEEEEECCTTC
T ss_pred cCCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhc------CCeEEEEEccCCC
Confidence 3457899999999999999999999999999999999999875 55666666542 2479999999999
Q ss_pred HHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccc
Q 022369 132 LDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY 211 (298)
Q Consensus 132 ~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~ 211 (298)
+++++++++++.+++|+||+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..++
T Consensus 113 ~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~ 192 (346)
T 3kvo_A 113 EQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNL 192 (346)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHc
Confidence 99999999999999999999999999988888999999999999999999999999999999999989999999999866
Q ss_pred cCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCc-cccCccC
Q 022369 212 VGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGI-VSTNVAR 275 (298)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~-v~T~~~~ 275 (298)
.+. ..+....|++||+++.+|+++|+.|+ . .||+||+|+||. ++|++.+
T Consensus 193 ~~~-------------~~~~~~~Y~aSKaal~~l~~~la~e~-~-~gIrvn~v~PG~~i~T~~~~ 242 (346)
T 3kvo_A 193 NPV-------------WFKQHCAYTIAKYGMSMYVLGMAEEF-K-GEIAVNALWPKTAIHTAAMD 242 (346)
T ss_dssp CGG-------------GTSSSHHHHHHHHHHHHHHHHHHHHT-T-TTCEEEEEECSBCBCCHHHH
T ss_pred CCC-------------CCCCchHHHHHHHHHHHHHHHHHHHh-c-CCcEEEEEeCCCccccHHHH
Confidence 541 12677889999999999999999999 6 899999999995 9998754
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-41 Score=290.74 Aligned_cols=189 Identities=24% Similarity=0.288 Sum_probs=173.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++++|++|++++++++++
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~v~~~~~~ 73 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---------GERSMFVRHDVSSEADWTLVMAA 73 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---------CTTEEEECCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---------CCceEEEEccCCCHHHHHHHHHH
Confidence 577899999999999999999999999999999999998888776665 13688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+....++.+.+.++|++.+++|+.+++++++.++|.|++++ |+|||+||..++.+.
T Consensus 74 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~------- 145 (253)
T 1hxh_A 74 VQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPI------- 145 (253)
T ss_dssp HHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcCCC-------
Confidence 999999999999999998777888999999999999999999999999999999877 999999999876654
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCC--CcEEEEeeCCccccCccCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAES--GINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~--gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|++||+++++|+++++.|+ .++ ||+||+|+||+|+|++.+.
T Consensus 146 --------~~~~~Y~~sK~a~~~~~~~la~e~-~~~~~gi~v~~v~Pg~v~t~~~~~ 193 (253)
T 1hxh_A 146 --------EQYAGYSASKAAVSALTRAAALSC-RKQGYAIRVNSIHPDGIYTPMMQA 193 (253)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHH-HHHTCCEEEEEEEESEECCHHHHH
T ss_pred --------CCCccHHHHHHHHHHHHHHHHHHh-hhcCCCeEEEEEEeCCccCchhhh
Confidence 677889999999999999999999 666 9999999999999998643
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-40 Score=284.81 Aligned_cols=189 Identities=23% Similarity=0.266 Sum_probs=173.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.+|++|++++++++++
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~~~ 72 (254)
T 1hdc_A 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---------GDAARYQHLDVTIEEDWQRVVAY 72 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---------GGGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---------CCceeEEEecCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999988877765554 13688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+....++.+.+.++|++.+++|+.|++++++.++|.|++++.|+|||+||..++.+.
T Consensus 73 ~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 145 (254)
T 1hdc_A 73 AREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGL------- 145 (254)
T ss_dssp HHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCC-------
Confidence 9999999999999999987777888999999999999999999999999999998888999999999876654
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+
T Consensus 146 --------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~ 190 (254)
T 1hdc_A 146 --------ALTSSYGASKWGVRGLSKLAAVEL-GTDRIRVNSVHPGMTYTPMTA 190 (254)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHH
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecccCcCcccc
Confidence 677889999999999999999999 788999999999999999854
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-40 Score=288.53 Aligned_cols=213 Identities=22% Similarity=0.330 Sum_probs=181.1
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH-HHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA-ANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+.++ .+++.+++.+. +.++.++.+|++|++++++++
T Consensus 25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~ 98 (283)
T 1g0o_A 25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN------GSDAACVKANVGVVEDIVRMF 98 (283)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHh------CCCeEEEEcCCCCHHHHHHHH
Confidence 35789999999999999999999999999999999999765 55555666542 237889999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+.+|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+| ++.|+|||+||..+..+.
T Consensus 99 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~--~~~g~iv~isS~~~~~~~----- 171 (283)
T 1g0o_A 99 EEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHL--EIGGRLILMGSITGQAKA----- 171 (283)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHS--CTTCEEEEECCGGGTCSS-----
T ss_pred HHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCCeEEEEechhhccCC-----
Confidence 9999999999999999999877788899999999999999999999999999999 356899999998866543
Q ss_pred ccccccccCCC-CcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------------hHHHHHHHH
Q 022369 220 MNVVSGRRKYT-SLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------------PKIVQAAYH 286 (298)
Q Consensus 220 ~~~~~~~~~~~-~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------------~~~~~~~~~ 286 (298)
+ ....|++||+++++|+++++.|+ .++||+||+|+||+|+|++.+.. ++..+.+..
T Consensus 172 ----------~~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (283)
T 1g0o_A 172 ----------VPKHAVYSGSKGAIETFARCMAIDM-ADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAA 240 (283)
T ss_dssp ----------CSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHH
T ss_pred ----------CCCCcchHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCcccchhhhhhhhhccccccccCHHHHHHHHh
Confidence 3 37789999999999999999999 78899999999999999985432 222333334
Q ss_pred --hhhhccc-CCCC
Q 022369 287 --LIPYFIF-NPQE 297 (298)
Q Consensus 287 --~~p~~~~-~pe~ 297 (298)
..|++++ +|||
T Consensus 241 ~~~~p~~r~~~p~d 254 (283)
T 1g0o_A 241 VQWSPLRRVGLPID 254 (283)
T ss_dssp HHSCTTCSCBCHHH
T ss_pred hcCCCCCCCcCHHH
Confidence 5677776 6654
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=284.07 Aligned_cols=213 Identities=15% Similarity=0.181 Sum_probs=183.0
Q ss_pred CCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+++||++|||||+ +|||+++|++|+++|++|++++|+.+..+.+. ++.+.... .++.++++|++|++++++++
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~----~~~~~~~~D~~~~~~v~~~~ 78 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVH-ELAGTLDR----NDSIILPCDVTNDAEIETCF 78 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HHHHTSSS----CCCEEEECCCSSSHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHH-HHHHhcCC----CCceEEeCCCCCHHHHHHHH
Confidence 5789999999999 77999999999999999999999965555443 33333221 26899999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCC----CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFS----IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~----~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.+++.++++++|.|++ +|+|||+||.++..+.
T Consensus 79 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~g~iv~isS~~~~~~~- 155 (266)
T 3oig_A 79 ASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTE--GGSIVTLTYLGGELVM- 155 (266)
T ss_dssp HHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTT--CEEEEEEECGGGTSCC-
T ss_pred HHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCC--CceEEEEecccccccC-
Confidence 999999999999999999876 467788999999999999999999999999999975 5899999999876665
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhhcc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPYFI 292 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~~~ 292 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+... +..+......|+++
T Consensus 156 --------------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~ 220 (266)
T 3oig_A 156 --------------PNYNVMGVAKASLDASVKYLAADL-GKENIRVNSISAGPIRTLSAKGISDFNSILKDIEERAPLRR 220 (266)
T ss_dssp --------------TTTHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHHSTTSS
T ss_pred --------------CCcchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEecCcccccccccccchHHHHHHHHhcCCCCC
Confidence 778899999999999999999999 788999999999999999988764 33445555777777
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 221 ~~~p~d 226 (266)
T 3oig_A 221 TTTPEE 226 (266)
T ss_dssp CCCHHH
T ss_pred CCCHHH
Confidence 6 6654
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=283.47 Aligned_cols=189 Identities=23% Similarity=0.350 Sum_probs=173.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.. .+.++++|++|++++++++++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~D~~~~~~v~~~~~~ 74 (260)
T 1nff_A 4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD---------AARYVHLDVTQPAQWKAAVDT 74 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG---------GEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc---------CceEEEecCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999999888777665432 578899999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||..++.+.
T Consensus 75 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 147 (260)
T 1nff_A 75 AVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGT------- 147 (260)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCC-------
Confidence 9999999999999999987778888999999999999999999999999999998888999999999876654
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
++...|++||+++++|+++++.|+ .++||+||+|+||+|.|++.+
T Consensus 148 --------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~ 192 (260)
T 1nff_A 148 --------VACHGYTATKFAVRGLTKSTALEL-GPSGIRVNSIHPGLVKTPMTD 192 (260)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSGGGT
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHHh-CccCcEEEEEEeCCCCCCccc
Confidence 677889999999999999999999 788999999999999999865
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=285.25 Aligned_cols=192 Identities=24% Similarity=0.329 Sum_probs=168.6
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++ |++|||||++|||+++|++|+++|++|++++|+.++++++.+++... .++.++++|++|+++++++++
T Consensus 18 ~~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~Dv~d~~~v~~~~~ 89 (272)
T 2nwq_A 18 SHMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK-------TRVLPLTLDVRDRAAMSAAVD 89 (272)
T ss_dssp ---C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT-------SCEEEEECCTTCHHHHHHHHH
T ss_pred CCcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcC-------CcEEEEEcCCCCHHHHHHHHH
Confidence 4566 99999999999999999999999999999999999888887776431 368899999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCC-CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCC-eEEEEcCCccccCCCCcc
Q 022369 141 AWNGRLGPLHVLINNAGIFSI-GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPS-RIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g-~Iv~isS~~~~~~~~~~~ 218 (298)
++.+++|++|+||||||+... .++.+.+.++|++.+++|+.|+++++++++|.|++++.| +|||+||..++.+.
T Consensus 90 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~---- 165 (272)
T 2nwq_A 90 NLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPY---- 165 (272)
T ss_dssp TCCGGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSCC----
T ss_pred HHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccCC----
Confidence 999999999999999998763 678899999999999999999999999999999988888 99999999866554
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|+|.+.
T Consensus 166 -----------~~~~~Y~asKaa~~~l~~~la~el-~~~gIrvn~v~PG~v~T~~~~~ 211 (272)
T 2nwq_A 166 -----------PGSHVYGGTKAFVEQFSLNLRCDL-QGTGVRVTNLEPGLCESEFSLV 211 (272)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHTTC-TTSCCEEEEEEECSBC------
T ss_pred -----------CCCchHHHHHHHHHHHHHHHHHHh-CccCeEEEEEEcCCCcCcchhc
Confidence 677889999999999999999999 8889999999999999999753
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=285.38 Aligned_cols=203 Identities=27% Similarity=0.343 Sum_probs=177.4
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.++ +.++.++++|++|+++++++++
T Consensus 4 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-----------------~~~~~~~~~Dl~~~~~v~~~~~ 66 (264)
T 2dtx_A 4 SDLRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG-----------------EAKYDHIECDVTNPDQVKASID 66 (264)
T ss_dssp GGGTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC-----------------SCSSEEEECCTTCHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc-----------------CCceEEEEecCCCHHHHHHHHH
Confidence 35778999999999999999999999999999999998764 1367889999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||.+++.+.
T Consensus 67 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~------ 140 (264)
T 2dtx_A 67 HIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIIT------ 140 (264)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCC------
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCC------
Confidence 99999999999999999987778889999999999999999999999999999998888999999999866554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch------------HHHHHHHHhh
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP------------KIVQAAYHLI 288 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~------------~~~~~~~~~~ 288 (298)
++...|++||+++.+|+++++.|+ .+. |+||+|+||+++|++.+... +..+.+....
T Consensus 141 ---------~~~~~Y~~sK~a~~~~~~~la~e~-~~~-i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (264)
T 2dtx_A 141 ---------KNASAYVTSKHAVIGLTKSIALDY-APL-LRCNAVCPATIDTPLVRKAAELEVGSDPMRIEKKISEWGHEH 209 (264)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHH-TTT-SEEEEEEECSBCSHHHHHHHHHHHCSCHHHHHHHHHHHHHHS
T ss_pred ---------CCchhHHHHHHHHHHHHHHHHHHh-cCC-cEEEEEEeCCCcCcchhhhhhcccccCchhhHHHHHHHHhcC
Confidence 677889999999999999999999 667 99999999999999865431 2223333456
Q ss_pred hhccc-CCCC
Q 022369 289 PYFIF-NPQE 297 (298)
Q Consensus 289 p~~~~-~pe~ 297 (298)
|++++ +|||
T Consensus 210 p~~~~~~p~d 219 (264)
T 2dtx_A 210 PMQRIGKPQE 219 (264)
T ss_dssp TTSSCBCHHH
T ss_pred CCCCCcCHHH
Confidence 77666 6654
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=287.09 Aligned_cols=212 Identities=21% Similarity=0.304 Sum_probs=184.0
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++++|++|++++++++
T Consensus 25 ~~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~---------~~~~~~~~Dl~~~~~v~~~~ 95 (281)
T 3ppi_A 25 IKQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELG---------NRAEFVSTNVTSEDSVLAAI 95 (281)
T ss_dssp CGGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC---------TTEEEEECCTTCHHHHHHHH
T ss_pred hhccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhC---------CceEEEEcCCCCHHHHHHHH
Confidence 457889999999999999999999999999999999999999888877761 37899999999999999999
Q ss_pred HHHhcccCCccEEEEc-cCCCCCCCC-----CccChhhHHHHHhhhchHHHHHHHHHhhhhhc------CCCCeEEEEcC
Q 022369 140 EAWNGRLGPLHVLINN-AGIFSIGEP-----QKFSKDGYEEHMQVNHLAPALLSILLFPSLIR------GSPSRIINVNS 207 (298)
Q Consensus 140 ~~~~~~~g~idilVnn-ag~~~~~~~-----~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~------~~~g~Iv~isS 207 (298)
+++ ++++++|++||| ||+.....+ .+.+.++|++.+++|+.++++++++++|.|.+ ++.|+||++||
T Consensus 96 ~~~-~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS 174 (281)
T 3ppi_A 96 EAA-NQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTAS 174 (281)
T ss_dssp HHH-TTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECC
T ss_pred HHH-HHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEec
Confidence 999 788999999999 666554443 46889999999999999999999999999987 56789999999
Q ss_pred CccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH-HHHHHHH
Q 022369 208 VMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK-IVQAAYH 286 (298)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~-~~~~~~~ 286 (298)
.+++.+. ++...|++||+|+.+|+++|+.|+ .++||+|++|+||+|+|++.+...+ ..+.+..
T Consensus 175 ~~~~~~~---------------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~ 238 (281)
T 3ppi_A 175 IAGYEGQ---------------IGQTAYAAAKAGVIGLTIAAARDL-SSAGIRVNTIAPGTMKTPIMESVGEEALAKFAA 238 (281)
T ss_dssp GGGTSCC---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHTTCHHHHHHHHH
T ss_pred ccccCCC---------------CCCcccHHHHHHHHHHHHHHHHHH-hhcCeEEEEEecCcCCchhhhcccHHHHHHHHh
Confidence 9877665 778899999999999999999999 7889999999999999999887644 3444555
Q ss_pred hhhh-ccc-CCCC
Q 022369 287 LIPY-FIF-NPQE 297 (298)
Q Consensus 287 ~~p~-~~~-~pe~ 297 (298)
..|+ +++ +|||
T Consensus 239 ~~~~~~~~~~ped 251 (281)
T 3ppi_A 239 NIPFPKRLGTPDE 251 (281)
T ss_dssp TCCSSSSCBCHHH
T ss_pred cCCCCCCCCCHHH
Confidence 6666 555 6654
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-40 Score=284.10 Aligned_cols=206 Identities=27% Similarity=0.391 Sum_probs=171.5
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
...++++|++|||||++|||+++|++|+++|++|++++|+.+++++ +..+++|++|+++++++
T Consensus 9 ~~~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-----------------~~~~~~D~~~~~~~~~~ 71 (247)
T 1uzm_A 9 AKPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG-----------------LFGVEVDVTDSDAVDRA 71 (247)
T ss_dssp CCCCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT-----------------SEEEECCTTCHHHHHHH
T ss_pred ccccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH-----------------hcCeeccCCCHHHHHHH
Confidence 3456889999999999999999999999999999999998764332 12488999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+|||+||..++.+.
T Consensus 72 ~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 147 (247)
T 1uzm_A 72 FTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGI---- 147 (247)
T ss_dssp HHHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC--------
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCC----
Confidence 9999999999999999999987777889999999999999999999999999999998888999999999876654
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHHhhhhccc-CCC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~p~~~~-~pe 296 (298)
+....|++||+++++|+++++.|+ .++||+||+|+||+++|++.+...+. .+......|.+++ +||
T Consensus 148 -----------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~ 215 (247)
T 1uzm_A 148 -----------GNQANYAASKAGVIGMARSIAREL-SKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPA 215 (247)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHSCHHHHHHHGGGCTTCSCBCHH
T ss_pred -----------CCChhHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEeCCCcccchhhcCHHHHHHHHhcCCCCCCcCHH
Confidence 677889999999999999999999 78899999999999999997654332 2333345676665 665
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 216 d 216 (247)
T 1uzm_A 216 E 216 (247)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=282.68 Aligned_cols=211 Identities=12% Similarity=0.137 Sum_probs=178.7
Q ss_pred CCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
++++|++|||||+ +|||+++|++|+++|++|++++|+. +.++..+++.+..+ ...++++|++|++++++++
T Consensus 6 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~------~~~~~~~D~~~~~~v~~~~ 78 (265)
T 1qsg_A 6 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLG------SDIVLQCDVAEDASIDTMF 78 (265)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHTT------CCCEEECCTTCHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcC------CcEEEEccCCCHHHHHHHH
Confidence 4778999999999 9999999999999999999999997 45555555554321 2378899999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCC----CCCCc-cChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSI----GEPQK-FSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~----~~~~~-~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~ 214 (298)
+++.+++|++|+||||||+... .++.+ .+.++|++.+++|+.|+++++++++|+|++ +|+|||+||..++.+.
T Consensus 79 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~iv~isS~~~~~~~ 156 (265)
T 1qsg_A 79 AELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP--GSALLTLSYLGAERAI 156 (265)
T ss_dssp HHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEEECGGGTSBC
T ss_pred HHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc--CCEEEEEcchhhccCC
Confidence 9999999999999999998753 55667 899999999999999999999999999975 4899999998766554
Q ss_pred CCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhhc
Q 022369 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPYF 291 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~~ 291 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+... +..+.+....|+.
T Consensus 157 ---------------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~p~~ 220 (265)
T 1qsg_A 157 ---------------PNYNVMGLAKASLEANVRYMANAM-GPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIR 220 (265)
T ss_dssp ---------------TTTTHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTS
T ss_pred ---------------CCchHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeCCCccchhhcccccHHHHHHHHhcCCCC
Confidence 677889999999999999999999 788999999999999999976542 3333444456777
Q ss_pred cc-CCCC
Q 022369 292 IF-NPQE 297 (298)
Q Consensus 292 ~~-~pe~ 297 (298)
++ +|||
T Consensus 221 ~~~~~~d 227 (265)
T 1qsg_A 221 RTVTIED 227 (265)
T ss_dssp SCCCHHH
T ss_pred CCCCHHH
Confidence 66 6654
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-39 Score=279.71 Aligned_cols=192 Identities=24% Similarity=0.260 Sum_probs=170.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++... +.++.++++|++|++++++++++
T Consensus 2 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dv~~~~~v~~~~~~ 75 (260)
T 2qq5_A 2 PMNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSL------GGQCVPVVCDSSQESEVRSLFEQ 75 (260)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH------SSEEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc------CCceEEEECCCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999999999998888887653 13788999999999999999999
Q ss_pred Hhcc-cCCccEEEEccC--CC-----CCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccC
Q 022369 142 WNGR-LGPLHVLINNAG--IF-----SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213 (298)
Q Consensus 142 ~~~~-~g~idilVnnag--~~-----~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~ 213 (298)
+.++ +|++|+|||||| +. ...++.+.+.++|++++++|+.+++++++.++|.|++++.|+|||+||..++.+
T Consensus 76 ~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~ 155 (260)
T 2qq5_A 76 VDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQY 155 (260)
T ss_dssp HHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTSC
T ss_pred HHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcCC
Confidence 9886 899999999995 32 245678889999999999999999999999999999888899999999876543
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
++...|++||+++.+|+++++.|+ .++||+||+|+||+|+|+|.+.
T Consensus 156 ----------------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~ 201 (260)
T 2qq5_A 156 ----------------MFNVPYGVGKAACDKLAADCAHEL-RRHGVSCVSLWPGIVQTELLKE 201 (260)
T ss_dssp ----------------CSSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEECCCSCTTTC--
T ss_pred ----------------CCCCchHHHHHHHHHHHHHHHHHh-ccCCeEEEEEecCccccHHHHH
Confidence 234679999999999999999999 7889999999999999999765
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=282.50 Aligned_cols=211 Identities=18% Similarity=0.168 Sum_probs=179.7
Q ss_pred CCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
++++|++|||||+ +|||+++|++|+++|++|++++|+.+ .++..+++.+..+ .+.++++|++|++++++++
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~------~~~~~~~D~~~~~~v~~~~ 77 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALG------GALLFRADVTQDEELDALF 77 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTT------CCEEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcC------CcEEEECCCCCHHHHHHHH
Confidence 4678999999999 99999999999999999999999975 4445555544321 3688999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCC----CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSI----GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++.+++|++|+||||||+... .++.+.+.++|++.+++|+.|+++++++++|.|++ +|+|||+||..++.+.
T Consensus 78 ~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~iv~isS~~~~~~~- 154 (261)
T 2wyu_A 78 AGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE--GGGIVTLTYYASEKVV- 154 (261)
T ss_dssp HHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE--EEEEEEEECGGGTSBC-
T ss_pred HHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhcc--CCEEEEEecccccCCC-
Confidence 9999999999999999998753 56778999999999999999999999999999975 4899999998766554
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhcc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFI 292 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~ 292 (298)
+....|++||+++++|+++++.|+ .++||+||+|+||+|+|++.+.. ++..+.+....|+.+
T Consensus 155 --------------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~~ 219 (261)
T 2wyu_A 155 --------------PKYNVMAIAKAALEASVRYLAYEL-GPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRR 219 (261)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCCCCTGGGGCTTHHHHHHHHHHHSTTSS
T ss_pred --------------CCchHHHHHHHHHHHHHHHHHHHH-hhhCcEEEEEeeCCCcCchhhhccccHHHHHHHHhcCCCCC
Confidence 677889999999999999999999 78899999999999999997654 233344445678776
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 220 ~~~~~d 225 (261)
T 2wyu_A 220 NITQEE 225 (261)
T ss_dssp CCCHHH
T ss_pred CCCHHH
Confidence 6 6654
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-39 Score=284.28 Aligned_cols=210 Identities=26% Similarity=0.384 Sum_probs=179.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .+.++++|++|+++++++++
T Consensus 5 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------~~~~~~~Dv~d~~~v~~~~~ 74 (270)
T 1yde_A 5 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP----------GAVFILCDVTQEDDVKTLVS 74 (270)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCT----------TEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----------CCeEEEcCCCCHHHHHHHHH
Confidence 35789999999999999999999999999999999999888776655431 37889999999999999999
Q ss_pred HHhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.|+++++++++|+|+++ .|+|||+||..+..+.
T Consensus 75 ~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~~----- 148 (270)
T 1yde_A 75 ETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS-QGNVINISSLVGAIGQ----- 148 (270)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCHHHHHCC-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC-CCEEEEEcCccccCCC-----
Confidence 99999999999999999865 3577889999999999999999999999999999875 5899999998766554
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc----hHH---HHHHHHhhhhcc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL----PKI---VQAAYHLIPYFI 292 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~----~~~---~~~~~~~~p~~~ 292 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.+.. ++. ........|+++
T Consensus 149 ----------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~vn~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~p~~r 217 (270)
T 1yde_A 149 ----------AQAVPYVATKGAVTAMTKALALDE-SPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGR 217 (270)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTSS
T ss_pred ----------CCCcccHHHHHHHHHHHHHHHHHh-hhhCcEEEEEEeCccccchhhhhhhcccchHHHHHHHhhcCCCCC
Confidence 677889999999999999999999 78899999999999999986432 111 122234568877
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 218 ~~~p~d 223 (270)
T 1yde_A 218 MGQPAE 223 (270)
T ss_dssp CBCHHH
T ss_pred CcCHHH
Confidence 6 6654
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=280.08 Aligned_cols=183 Identities=23% Similarity=0.285 Sum_probs=161.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.+. .. . .+.++.+|++|++++++++++
T Consensus 4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~------------~~--~--~~~~~~~D~~d~~~~~~~~~~ 67 (250)
T 2fwm_X 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ------------EQ--Y--PFATEVMDVADAAQVAQVCQR 67 (250)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS------------SC--C--SSEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh------------hc--C--CceEEEcCCCCHHHHHHHHHH
Confidence 4778999999999999999999999999999999998651 01 1 267889999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..++.+.
T Consensus 68 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~------- 140 (250)
T 2fwm_X 68 LLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPR------- 140 (250)
T ss_dssp HHHHCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCC-------
T ss_pred HHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCC-------
Confidence 9999999999999999987778889999999999999999999999999999998888999999999866554
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|++||+++++|+++++.|+ .++||+||+|+||+++|++.+.
T Consensus 141 --------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~ 186 (250)
T 2fwm_X 141 --------IGMSAYGASKAALKSLALSVGLEL-AGSGVRCNVVSPGSTDTDMQRT 186 (250)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCC-------
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHh-CccCCEEEEEECCcccCccccc
Confidence 777889999999999999999999 7889999999999999999764
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=292.27 Aligned_cols=199 Identities=23% Similarity=0.233 Sum_probs=178.5
Q ss_pred CCCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC----------chHHHHHHHHHHHhhcCCCCCccEEEE
Q 022369 56 NPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN----------LKAANELIQKWQEEWSGKGLPLNIEAM 125 (298)
Q Consensus 56 ~~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (298)
.+..+.+++||++|||||++|||+++|++|+++|++|++++|+ .+.++++.+++... +.++.++
T Consensus 18 ~p~~m~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 91 (322)
T 3qlj_A 18 GPGSMGVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAA------GGEAVAD 91 (322)
T ss_dssp ----CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHT------TCEEEEE
T ss_pred CCchhcccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhc------CCcEEEE
Confidence 3445667899999999999999999999999999999999998 77888888887653 2478999
Q ss_pred EcCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC------C
Q 022369 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS------P 199 (298)
Q Consensus 126 ~~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~------~ 199 (298)
.+|++|+++++++++++.+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|.+.+ .
T Consensus 92 ~~Dv~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~ 171 (322)
T 3qlj_A 92 GSNVADWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVD 171 (322)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCC
Confidence 9999999999999999999999999999999998888889999999999999999999999999999998632 3
Q ss_pred CeEEEEcCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 200 SRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 200 g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
|+|||+||.+++.+. ++...|++||+|+.+|+++|+.|+ .++||+||+|+|| +.|+|....
T Consensus 172 g~IV~isS~~~~~~~---------------~~~~~Y~asKaal~~l~~~la~e~-~~~gI~vn~v~PG-~~t~~~~~~ 232 (322)
T 3qlj_A 172 GRIINTSSGAGLQGS---------------VGQGNYSAAKAGIATLTLVGAAEM-GRYGVTVNAIAPS-ARTRMTETV 232 (322)
T ss_dssp EEEEEECCHHHHHCB---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC-TTSCCSCCS
T ss_pred cEEEEEcCHHHccCC---------------CCCccHHHHHHHHHHHHHHHHHHh-cccCcEEEEecCC-CCCccchhh
Confidence 799999999877665 778889999999999999999999 8889999999999 999998764
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=281.19 Aligned_cols=212 Identities=27% Similarity=0.353 Sum_probs=183.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEE-EcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++|++|||||++|||+++|++|+++|++|+++ +|+.+++++..+++.+. +.++.++.+|++|.++++++++
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~ 77 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSN------GGSAFSIGANLESLHGVEALYS 77 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHT------TCEEEEEECCTTSHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhc------CCceEEEecCcCCHHHHHHHHH
Confidence 3678999999999999999999999999999885 77888888888887663 2478999999999999999999
Q ss_pred HHhcccC------CccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC
Q 022369 141 AWNGRLG------PLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 141 ~~~~~~g------~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~ 214 (298)
++.+.++ ++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++ .|+||++||.++..+.
T Consensus 78 ~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~~~iv~isS~~~~~~~ 155 (255)
T 3icc_A 78 SLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRD--NSRIINISSAATRISL 155 (255)
T ss_dssp HHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE--EEEEEEECCGGGTSCC
T ss_pred HHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCC--CCEEEEeCChhhccCC
Confidence 9887764 4999999999987778889999999999999999999999999999943 5799999999876665
Q ss_pred CCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhhc
Q 022369 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPYF 291 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~~ 291 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|+|.+... ...+......|++
T Consensus 156 ---------------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~ 219 (255)
T 3icc_A 156 ---------------PDFIAYSMTKGAINTMTFTLAKQL-GARGITVNAILPGFVKTDMNAELLSDPMMKQYATTISAFN 219 (255)
T ss_dssp ---------------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCCSSSTTTTTSHHHHHHHHHTSTTS
T ss_pred ---------------CCcchhHHhHHHHHHHHHHHHHHH-HhcCeEEEEEEEeeecccchhhhcccHHHHHhhhccCCcC
Confidence 778899999999999999999999 788999999999999999987652 2233344466777
Q ss_pred cc-CCCC
Q 022369 292 IF-NPQE 297 (298)
Q Consensus 292 ~~-~pe~ 297 (298)
++ +|||
T Consensus 220 ~~~~~~d 226 (255)
T 3icc_A 220 RLGEVED 226 (255)
T ss_dssp SCBCHHH
T ss_pred CCCCHHH
Confidence 66 6654
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-39 Score=275.07 Aligned_cols=190 Identities=22% Similarity=0.290 Sum_probs=171.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+... .++.++++|++|+++++++++++.
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~ 75 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQG-----VEVFYHHLDVSKAESVEEFSKKVL 75 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-----CCEEEEECCTTCHHHHHHHCC-HH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-----CeEEEEEeccCCHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999888875432 479999999999999999999999
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+++|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|. ++.|++|+++|..+..+.
T Consensus 76 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~-~~~~~ii~~sS~~~~~~~--------- 145 (235)
T 3l77_A 76 ERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLK-RTGGLALVTTSDVSARLI--------- 145 (235)
T ss_dssp HHHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHH-HHTCEEEEECCGGGSSCC---------
T ss_pred HhcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCcEEEEecchhcccC---------
Confidence 9999999999999998888899999999999999999999999999999994 456899999998766554
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|++||+++.+|+++++.+ ..||+||+|+||+|+|+|.+..
T Consensus 146 ------~~~~~Y~~sKaa~~~~~~~l~~~---~~~i~v~~v~PG~v~T~~~~~~ 190 (235)
T 3l77_A 146 ------PYGGGYVSTKWAARALVRTFQIE---NPDVRFFELRPGAVDTYFGGSK 190 (235)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHH---CTTSEEEEEEECSBSSSTTTCC
T ss_pred ------CCcchHHHHHHHHHHHHHHHhhc---CCCeEEEEEeCCcccccccccc
Confidence 67788999999999999999555 4689999999999999998654
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=283.52 Aligned_cols=213 Identities=27% Similarity=0.348 Sum_probs=173.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEE-EcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
++|++|||||++|||+++|++|+++|++|+++ +|+.+.++++.+++.+. +.++.++.+|++|+++++++++++
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~v~~~~~~~ 98 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITES------GGEAVAIPGDVGNAADIAAMFSAV 98 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhc------CCcEEEEEcCCCCHHHHHHHHHHH
Confidence 57999999999999999999999999999887 78888888887777653 247999999999999999999999
Q ss_pred hcccCCccEEEEccCCCCC-CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC---CCCeEEEEcCCccccCCCCcc
Q 022369 143 NGRLGPLHVLINNAGIFSI-GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG---SPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~---~~g~Iv~isS~~~~~~~~~~~ 218 (298)
.+++|++|+||||||+... .++.+.+.++|++.+++|+.|+++++++++|.|.+. +.|+||++||.++..+..
T Consensus 99 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--- 175 (272)
T 4e3z_A 99 DRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSA--- 175 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCT---
T ss_pred HHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCC---
Confidence 9999999999999998764 678889999999999999999999999999999873 568999999998776541
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC--chHHHHHHHHhhhhccc-CC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD--LPKIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~--~~~~~~~~~~~~p~~~~-~p 295 (298)
+....|++||+|+.+|+++|+.|+ .++||+|++|+||+|+|++.+. .++..+......|+.++ +|
T Consensus 176 -----------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (272)
T 4e3z_A 176 -----------TQYVDYAASKAAIDTFTIGLAREV-AAEGIRVNAVRPGIIETDLHASGGLPDRAREMAPSVPMQRAGMP 243 (272)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBC------------------CCTTSSCBCH
T ss_pred -----------CCcchhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEecCCCcCCcccccCChHHHHHHhhcCCcCCCcCH
Confidence 356779999999999999999999 7889999999999999999764 23333444455666655 45
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 244 ed 245 (272)
T 4e3z_A 244 EE 245 (272)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=279.15 Aligned_cols=214 Identities=22% Similarity=0.329 Sum_probs=185.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|++|||||++|||+++|++|+++|++|++++| +.++++++.+++.+. +.++.++.+|++|+++++++++
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~ 77 (261)
T 1gee_A 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV------GGEAIAVKGDVTVESDVINLVQ 77 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCEEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhc------CCceEEEECCCCCHHHHHHHHH
Confidence 467899999999999999999999999999999999 888888877777542 2378899999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+++|++|+||||||+....++.+.+.++|++.+++|+.++++++++++|.|++++ .|+||++||..+..+.
T Consensus 78 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~----- 152 (261)
T 1gee_A 78 SAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPW----- 152 (261)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCCC-----
Confidence 9999999999999999998777788899999999999999999999999999999877 7999999998765543
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-CC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~p 295 (298)
++...|++||++++.|+++++.|+ .++||+|++|+||+|+|++.+.. ++..+......|++++ +|
T Consensus 153 ----------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (261)
T 1gee_A 153 ----------PLFVHYAASKGGMKLMTETLALEY-APKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGEP 221 (261)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTSSCBCH
T ss_pred ----------CCccHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCcCCchhhhcccChhHHHHHHhcCCCCCCcCH
Confidence 777889999999999999999999 77899999999999999997643 2223333345566655 55
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 222 ~d 223 (261)
T 1gee_A 222 EE 223 (261)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=286.38 Aligned_cols=210 Identities=24% Similarity=0.381 Sum_probs=173.7
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH-HHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSL-DSVVRF 138 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~-~~v~~~ 138 (298)
...+++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+.. +.++.++.+|++|+ ++++++
T Consensus 7 ~~~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~-----~~~~~~~~~Dl~~~~~~v~~~ 81 (311)
T 3o26_A 7 NTVTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSN-----HENVVFHQLDVTDPIATMSSL 81 (311)
T ss_dssp -----CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT-----CCSEEEEECCTTSCHHHHHHH
T ss_pred CccCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEEccCCCcHHHHHHH
Confidence 345779999999999999999999999999999999999999999988886642 23799999999998 999999
Q ss_pred HHHHhcccCCccEEEEccCCCCC------------------------------CCCCccChhhHHHHHhhhchHHHHHHH
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSI------------------------------GEPQKFSKDGYEEHMQVNHLAPALLSI 188 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~------------------------------~~~~~~~~~~~~~~~~vN~~~~~~l~~ 188 (298)
++++.+.+|++|+||||||+... .++.+.+.+++++.+++|+.|++++++
T Consensus 82 ~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~ 161 (311)
T 3o26_A 82 ADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTE 161 (311)
T ss_dssp HHHHHHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHH
Confidence 99999999999999999998642 245577899999999999999999999
Q ss_pred HHhhhhhcCCCCeEEEEcCCccccCCCCcccc---------------------------cccccccCC-CCcccchhhHH
Q 022369 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM---------------------------NVVSGRRKY-TSLMGYSGSKL 240 (298)
Q Consensus 189 ~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~---------------------------~~~~~~~~~-~~~~~Y~asKa 240 (298)
+++|.|++++.|+|||+||.++..+.....+. .......++ +....|++||+
T Consensus 162 ~~~~~l~~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~ 241 (311)
T 3o26_A 162 VLIPLLQLSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKA 241 (311)
T ss_dssp HHHHHHTTSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHH
T ss_pred HhhHhhccCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHH
Confidence 99999999888999999999887654211000 000001111 35578999999
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 241 a~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
|+.+|+++|+.|+ . +|+||+|+||+|+|+|.+..
T Consensus 242 a~~~~~~~la~e~-~--~i~v~~v~PG~v~T~~~~~~ 275 (311)
T 3o26_A 242 CLNAYTRVLANKI-P--KFQVNCVCPGLVKTEMNYGI 275 (311)
T ss_dssp HHHHHHHHHHHHC-T--TSEEEEECCCSBCSGGGTTC
T ss_pred HHHHHHHHHHhhc-C--CceEEEecCCceecCCcCCC
Confidence 9999999999999 4 49999999999999998764
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=281.34 Aligned_cols=205 Identities=24% Similarity=0.326 Sum_probs=172.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++. ++ .++.++.+|++|+++++++
T Consensus 3 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~----------~~~~~~~~D~~~~~~~~~~--- 68 (246)
T 2ag5_A 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KY----------PGIQTRVLDVTKKKQIDQF--- 68 (246)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GS----------TTEEEEECCTTCHHHHHHH---
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hc----------cCceEEEeeCCCHHHHHHH---
Confidence 467899999999999999999999999999999999987765543 21 1578899999999998844
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
.+.++++|+||||||+....++.+.+.++|++.+++|+.++++++++++|+|++++.|+||++||..+..+.
T Consensus 69 -~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~------- 140 (246)
T 2ag5_A 69 -ANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKG------- 140 (246)
T ss_dssp -HHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBC-------
T ss_pred -HHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCC-------
Confidence 445689999999999987778888999999999999999999999999999998888999999998866554
Q ss_pred ccccccCCC-CcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC-c------hHHHHHHHHhhhhccc
Q 022369 222 VVSGRRKYT-SLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD-L------PKIVQAAYHLIPYFIF 293 (298)
Q Consensus 222 ~~~~~~~~~-~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~-~------~~~~~~~~~~~p~~~~ 293 (298)
+ +...|++||+++++|+++++.|+ .++||+||+|+||+|+|++.+. . .+..+.+....|.+++
T Consensus 141 --------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (246)
T 2ag5_A 141 --------VVNRCVYSTTKAAVIGLTKSVAADF-IQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRF 211 (246)
T ss_dssp --------CTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTSSC
T ss_pred --------CCCCccHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeeCcCcCcchhhhhhcccCcHHHHHHHHhcCCCCCC
Confidence 4 67789999999999999999999 7889999999999999998654 1 1222334445676665
Q ss_pred -CCCC
Q 022369 294 -NPQE 297 (298)
Q Consensus 294 -~pe~ 297 (298)
+|||
T Consensus 212 ~~~~d 216 (246)
T 2ag5_A 212 ATAEE 216 (246)
T ss_dssp EEHHH
T ss_pred CCHHH
Confidence 6654
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=278.39 Aligned_cols=216 Identities=25% Similarity=0.314 Sum_probs=164.1
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++... +.++.++.+|++|++++++++
T Consensus 9 ~~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~ 82 (266)
T 1xq1_A 9 RWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK------GFQVTGSVCDASLRPEREKLM 82 (266)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCeeEEEECCCCCHHHHHHHH
Confidence 34678999999999999999999999999999999999999888888777653 236889999999999999999
Q ss_pred HHHhccc-CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRL-GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~-g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+.+ +++|+||||||+....++.+.+.++|++.+++|+.++++++++++|.|++++.++||++||..++.+.
T Consensus 83 ~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---- 158 (266)
T 1xq1_A 83 QTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSA---- 158 (266)
T ss_dssp HHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC------------
T ss_pred HHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCC----
Confidence 9999998 89999999999987777888999999999999999999999999999998888999999999876554
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch--HHHHHHHHhhhhccc-CC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP--KIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~--~~~~~~~~~~p~~~~-~p 295 (298)
+....|++||++++.|+++++.|+ .++||+|++|+||++.|++.+... ...+......|++++ +|
T Consensus 159 -----------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (266)
T 1xq1_A 159 -----------SVGSIYSATKGALNQLARNLACEW-ASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEP 226 (266)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEECCSCC-------------------------CCG
T ss_pred -----------CCCchHHHHHHHHHHHHHHHHHHH-hHhCcEEEEEeeCCCccchhhhhcCHHHHHHHHhcCCCCCCcCH
Confidence 667889999999999999999999 778999999999999999976532 222233345566655 66
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 227 ~d 228 (266)
T 1xq1_A 227 EE 228 (266)
T ss_dssp GG
T ss_pred HH
Confidence 65
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=294.80 Aligned_cols=212 Identities=13% Similarity=0.045 Sum_probs=174.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHH-cCCEEEEEEcCchHHHH------------HHHHHHHhhcCCCCCccEEEEEcCCC
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAE-SGAHVVMAVRNLKAANE------------LIQKWQEEWSGKGLPLNIEAMELDLL 130 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~-~G~~Vil~~r~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~D~s 130 (298)
.+|+||||||++|||+++|+.|++ .|++|++++|+.+.+++ +.+++.+. +.++..+.+|++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~------G~~a~~i~~Dvt 133 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAA------GLYSKSINGDAF 133 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHT------TCCEEEEESCTT
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhc------CCcEEEEEecCC
Confidence 489999999999999999999999 99999999998765432 22344332 247889999999
Q ss_pred CHHHHHHHHHHHhccc-CCccEEEEccCCC-------------CCCCC---------------------CccChhhHHHH
Q 022369 131 SLDSVVRFSEAWNGRL-GPLHVLINNAGIF-------------SIGEP---------------------QKFSKDGYEEH 175 (298)
Q Consensus 131 ~~~~v~~~~~~~~~~~-g~idilVnnag~~-------------~~~~~---------------------~~~~~~~~~~~ 175 (298)
|+++++++++++.+++ |+||+||||||+. ...++ .+.+.++|++.
T Consensus 134 d~~~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~ 213 (422)
T 3s8m_A 134 SDAARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDT 213 (422)
T ss_dssp SHHHHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHH
Confidence 9999999999999999 9999999999972 23344 36799999999
Q ss_pred HhhhchHHH-HHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccccCCCCc--ccchhhHHHHHHHHHHHHHH
Q 022369 176 MQVNHLAPA-LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSL--MGYSGSKLAQIKFSSILQKR 252 (298)
Q Consensus 176 ~~vN~~~~~-~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~asKaa~~~l~~~l~~e 252 (298)
+++|..+.| .+++++++.+..+++|+|||+||..+..+. |.+ .+|++||+|+.+|+++|+.|
T Consensus 214 v~Vn~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~---------------p~~~~~aY~ASKaAl~~lTrsLA~E 278 (422)
T 3s8m_A 214 ITVMGGQDWELWIDALEGAGVLADGARSVAFSYIGTEITW---------------PIYWHGALGKAKVDLDRTAQRLNAR 278 (422)
T ss_dssp HHHHSSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGH---------------HHHTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhchhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccC---------------CCccchHHHHHHHHHHHHHHHHHHH
Confidence 999999998 888888765444456999999999876654 555 88999999999999999999
Q ss_pred cCCCCCcEEEEeeCCccccCccCCchHHHHHH-HHhhhhccc-CCCC
Q 022369 253 LPAESGINVVCVSPGIVSTNVARDLPKIVQAA-YHLIPYFIF-NPQE 297 (298)
Q Consensus 253 ~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~-~~~~p~~~~-~pe~ 297 (298)
+ +++|||||+|+||+|+|++...++..-... ....|++++ +|||
T Consensus 279 l-a~~GIRVNaVaPG~i~T~~~~~ip~~~~~~~~~~~~m~r~G~pEd 324 (422)
T 3s8m_A 279 L-AKHGGGANVAVLKSVVTQASAAIPVMPLYISMVYKIMKEKGLHEG 324 (422)
T ss_dssp H-HTTTCEEEEEEECCCCCTTGGGSTHHHHHHHHHHHHHHHTTCCCC
T ss_pred h-CccCEEEEEEEcCCCcChhhhcCCCChHHHHHHHhhhcCCcChHH
Confidence 9 889999999999999999998876432211 123478888 8876
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-39 Score=283.16 Aligned_cols=208 Identities=14% Similarity=0.172 Sum_probs=174.9
Q ss_pred CCCCCEEEEeCC--CCchHHHHHHHHHHcCCEEEEEEcCchH-HHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 62 PVNDLTCIVTGS--TSGIGREIARQLAESGAHVVMAVRNLKA-ANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 62 ~~~~k~vlITGa--s~GIG~~~a~~la~~G~~Vil~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
++++|++||||| ++|||+++|++|+++|++|++++|+.++ ++++.+++ +.++.++++|++|+++++++
T Consensus 4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~ 74 (269)
T 2h7i_A 4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL---------PAKAPLLELDVQNEEHLASL 74 (269)
T ss_dssp TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS---------SSCCCEEECCTTCHHHHHHH
T ss_pred ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc---------CCCceEEEccCCCHHHHHHH
Confidence 577899999999 9999999999999999999999999865 34433221 23678899999999999999
Q ss_pred HHHHhcccC---CccEEEEccCCCC-----CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcc
Q 022369 139 SEAWNGRLG---PLHVLINNAGIFS-----IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMH 210 (298)
Q Consensus 139 ~~~~~~~~g---~idilVnnag~~~-----~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~ 210 (298)
++++.+++| ++|+||||||+.. ..++.+.+.++|++.+++|+.++++++++++|+|++ +|+|||+||..+
T Consensus 75 ~~~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~iv~iss~~~ 152 (269)
T 2h7i_A 75 AGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNP--GGSIVGMDFDPS 152 (269)
T ss_dssp HHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEEECCCS
T ss_pred HHHHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhcc--CCeEEEEcCccc
Confidence 999999999 9999999999875 467788999999999999999999999999999976 379999999754
Q ss_pred ccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-----hHH-----
Q 022369 211 YVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-----PKI----- 280 (298)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-----~~~----- 280 (298)
.+ .+.+..|++||+++.+|+++++.|+ .++||+||+|+||+|+|+|.+.. ++.
T Consensus 153 -~~---------------~~~~~~Y~asKaa~~~l~~~la~e~-~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~ 215 (269)
T 2h7i_A 153 -RA---------------MPAYNWMTVAKSALESVNRFVAREA-GKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQI 215 (269)
T ss_dssp -SC---------------CTTTHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHH
T ss_pred -cc---------------cCchHHHHHHHHHHHHHHHHHHHHh-cccCcEEEEEecCcccchhhhccccccchhhHHHHH
Confidence 22 2677889999999999999999999 78899999999999999986532 111
Q ss_pred ---HHHHHHhhhhc-cc-CCCC
Q 022369 281 ---VQAAYHLIPYF-IF-NPQE 297 (298)
Q Consensus 281 ---~~~~~~~~p~~-~~-~pe~ 297 (298)
.+.+....|++ ++ +|||
T Consensus 216 ~~~~~~~~~~~p~~rr~~~p~d 237 (269)
T 2h7i_A 216 QLLEEGWDQRAPIGWNMKDATP 237 (269)
T ss_dssp HHHHHHHHHHCTTCCCTTCCHH
T ss_pred HHHHHhhhccCCcccCCCCHHH
Confidence 12233467887 46 7765
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-38 Score=286.37 Aligned_cols=192 Identities=24% Similarity=0.345 Sum_probs=166.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC-----chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN-----LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
++++|++|||||++|||+++|++|+++|++|++++|+ .++++++.+.+... +.++.++++|++|+++++
T Consensus 2 ~m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~------~~~~~~~~~Dvtd~~~v~ 75 (324)
T 3u9l_A 2 VMSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDN------DVDLRTLELDVQSQVSVD 75 (324)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHH------TCCEEEEECCTTCHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhc------CCcEEEEEeecCCHHHHH
Confidence 3568999999999999999999999999999988775 45566665555442 247899999999999999
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
++++++.+++|++|+||||||+...+++.+.+.++|++.+++|+.|+++++++++|+|++++.|+||++||.++..+.
T Consensus 76 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~-- 153 (324)
T 3u9l_A 76 RAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGT-- 153 (324)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCC--
Confidence 999999999999999999999988888999999999999999999999999999999999889999999998866432
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
.+....|++||+|+++|+++++.|+ .++||+|++|+||+|.|++.
T Consensus 154 ------------~~~~~~Y~asKaa~~~~~~~la~el-~~~gI~v~~v~PG~v~t~~~ 198 (324)
T 3u9l_A 154 ------------PPYLAPYFAAKAAMDAIAVQYAREL-SRWGIETSIIVPGAFTSGTN 198 (324)
T ss_dssp ------------CSSCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECCC-----
T ss_pred ------------CCcchhHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEECCccccCch
Confidence 2567789999999999999999999 88899999999999998764
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=280.50 Aligned_cols=217 Identities=24% Similarity=0.334 Sum_probs=185.1
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
...++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++++. +.++.++.+|++|+++++++
T Consensus 38 ~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~d~~~v~~~ 111 (285)
T 2c07_A 38 YYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF------GYESSGYAGDVSKKEEISEV 111 (285)
T ss_dssp CCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT------TCCEEEEECCTTCHHHHHHH
T ss_pred ccccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhc------CCceeEEECCCCCHHHHHHH
Confidence 345678999999999999999999999999999999999998888887777542 24788999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++++.+.++++|+||||||+....++.+.+.++|++.+++|+.|++++++.++|.|++++.|+||++||..+..+.
T Consensus 112 ~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~---- 187 (285)
T 2c07_A 112 INKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGN---- 187 (285)
T ss_dssp HHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC----
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC----
Confidence 9999999999999999999987778888999999999999999999999999999998888999999999876654
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHHhhhhccc-CCC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~p~~~~-~pe 296 (298)
+....|++||++++.|+++++.|+ .+.||+|++|+||+++|++.....+. .+......|.+++ +||
T Consensus 188 -----------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (285)
T 2c07_A 188 -----------VGQANYSSSKAGVIGFTKSLAKEL-ASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPE 255 (285)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCC-----CCHHHHHHHHTTCTTSSCBCHH
T ss_pred -----------CCCchHHHHHHHHHHHHHHHHHHH-HHhCcEEEEEEeCcEecCchhhcCHHHHHHHHhhCCCCCCCCHH
Confidence 677889999999999999999999 77899999999999999998765433 2333345566555 554
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 256 d 256 (285)
T 2c07_A 256 E 256 (285)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=275.64 Aligned_cols=215 Identities=20% Similarity=0.268 Sum_probs=186.2
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.++++.. +.++.++++|++|+++++++++
T Consensus 9 ~~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~~~ 82 (260)
T 3awd_A 9 LRLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRME------GHDVSSVVMDVTNTESVQNAVR 82 (260)
T ss_dssp GCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCceEEEEecCCCHHHHHHHHH
Confidence 4578999999999999999999999999999999999998888887777653 2368999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.++++++++++|.|++++.++||++||..+..+.
T Consensus 83 ~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~----- 157 (260)
T 3awd_A 83 SVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVN----- 157 (260)
T ss_dssp HHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----
T ss_pred HHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccC-----
Confidence 99999999999999999876 667888999999999999999999999999999998888999999998866553
Q ss_pred ccccccccCCCCc--ccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC-Cc--hHHHHHHHHhhhhccc-
Q 022369 220 MNVVSGRRKYTSL--MGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR-DL--PKIVQAAYHLIPYFIF- 293 (298)
Q Consensus 220 ~~~~~~~~~~~~~--~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~-~~--~~~~~~~~~~~p~~~~- 293 (298)
+.. ..|++||++++.|+++++.|+ .++||+|++|+||+|+|++.+ .. ++..+.+....|+.++
T Consensus 158 ----------~~~~~~~Y~~sK~a~~~~~~~l~~e~-~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (260)
T 3awd_A 158 ----------RPQQQAAYNASKAGVHQYIRSLAAEW-APHGIRANAVAPTYIETTLTRFGMEKPELYDAWIAGTPMGRVG 226 (260)
T ss_dssp ----------SSSCCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCTTTHHHHTCHHHHHHHHHTCTTSSCB
T ss_pred ----------CCCCccccHHHHHHHHHHHHHHHHHh-hhcCeEEEEEEeeeeccchhhcccCChHHHHHHHhcCCcCCCC
Confidence 333 789999999999999999999 778999999999999999976 32 2333444455676655
Q ss_pred CCCC
Q 022369 294 NPQE 297 (298)
Q Consensus 294 ~pe~ 297 (298)
+|||
T Consensus 227 ~~~d 230 (260)
T 3awd_A 227 QPDE 230 (260)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 5553
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-39 Score=279.79 Aligned_cols=212 Identities=24% Similarity=0.324 Sum_probs=177.6
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++. .++.++++|++|+++++++++
T Consensus 8 ~~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~ 78 (265)
T 2o23_A 8 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLG---------NNCVFAPADVTSEKDVQTALA 78 (265)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHC---------TTEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhC---------CceEEEEcCCCCHHHHHHHHH
Confidence 46789999999999999999999999999999999999988887766651 368999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCC------ccChhhHHHHHhhhchHHHHHHHHHhhhhhcC------CCCeEEEEcCC
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQ------KFSKDGYEEHMQVNHLAPALLSILLFPSLIRG------SPSRIINVNSV 208 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~------~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~------~~g~Iv~isS~ 208 (298)
++.+++|++|+||||||+....++. +.+.++|++.+++|+.++++++++++|.|+++ +.|+||++||.
T Consensus 79 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~ 158 (265)
T 2o23_A 79 LAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASV 158 (265)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCT
T ss_pred HHHHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCCh
Confidence 9999999999999999987655544 37889999999999999999999999999987 67899999999
Q ss_pred ccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHHh
Q 022369 209 MHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYHL 287 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~ 287 (298)
.++.+. ++...|++||+++.+|+++++.|+ .++||+|++|+||+|+|++.+..++. .+.....
T Consensus 159 ~~~~~~---------------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~ 222 (265)
T 2o23_A 159 AAFEGQ---------------VGQAAYSASKGGIVGMTLPIARDL-APIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQ 222 (265)
T ss_dssp HHHHCC---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCC----------CHHHHT
T ss_pred hhcCCC---------------CCCchhHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeccccCccccccCHHHHHHHHHc
Confidence 876554 677889999999999999999999 77899999999999999998765432 2233345
Q ss_pred hhh-ccc-CCCC
Q 022369 288 IPY-FIF-NPQE 297 (298)
Q Consensus 288 ~p~-~~~-~pe~ 297 (298)
.|. +++ +|||
T Consensus 223 ~~~~~~~~~~~d 234 (265)
T 2o23_A 223 VPFPSRLGDPAE 234 (265)
T ss_dssp CSSSCSCBCHHH
T ss_pred CCCcCCCCCHHH
Confidence 565 454 5553
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-39 Score=281.82 Aligned_cols=188 Identities=27% Similarity=0.425 Sum_probs=173.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+.+|++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++++|++|+++++++++++
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dv~~~~~~~~~~~~~ 73 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY---------PDRAEAISLDVTDGERIDVVAADV 73 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC---------TTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---------cCCceEEEeeCCCHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999888765543 137899999999999999999999
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.+++|++|+||||||+....++.+.+.++|++.+++|+.|++++++.++|.|++++.|+||++||..++.+.
T Consensus 74 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------- 145 (281)
T 3m1a_A 74 LARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLSF-------- 145 (281)
T ss_dssp HHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC--------
T ss_pred HHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCCC--------
Confidence 999999999999999988788889999999999999999999999999999999888999999998876654
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
++...|++||+++++|+++++.|+ .++||+|++|+||+|+|++..
T Consensus 146 -------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~ 190 (281)
T 3m1a_A 146 -------AGFSAYSATKAALEQLSEGLADEV-APFGIKVLIVEPGAFRTNLFG 190 (281)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCTTTC
T ss_pred -------CCchHHHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCcccccccc
Confidence 778899999999999999999999 788999999999999999864
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-39 Score=275.85 Aligned_cols=204 Identities=26% Similarity=0.345 Sum_probs=174.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|++|||||++|||+++|++|+++|++|++++|+.+++ .+++ .+.++++|++| ++++++++++.+
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~-----------~~~~~~~D~~~-~~~~~~~~~~~~ 66 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEA---AQSL-----------GAVPLPTDLEK-DDPKGLVKRALE 66 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---HHHH-----------TCEEEECCTTT-SCHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHhh-----------CcEEEecCCch-HHHHHHHHHHHH
Confidence 68999999999999999999999999999999998762 2222 15678999999 999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
.+|++|+||||||+....++.+.+.++|++.+++|+.++++++++++|.|++++.|+|||+||..++.+..
T Consensus 67 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~--------- 137 (239)
T 2ekp_A 67 ALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGG--------- 137 (239)
T ss_dssp HHTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCT---------
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCC---------
Confidence 99999999999999877788899999999999999999999999999999988889999999987665420
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-CCCC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~pe~ 297 (298)
.++...|++||+++++|+++++.|+ .++||+||+|+||+++|++.+.. ++..+......|++++ +|||
T Consensus 138 ----~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~p~~~~~~~~d 209 (239)
T 2ekp_A 138 ----PVPIPAYTTAKTALLGLTRALAKEW-ARLGIRVNLLCPGYVETEFTLPLRQNPELYEPITARIPMGRWARPEE 209 (239)
T ss_dssp ----TSCCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSGGGHHHHTCHHHHHHHHTTCTTSSCBCHHH
T ss_pred ----CCCCccHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEeCCccCchhhccccCHHHHHHHHhcCCCCCCcCHHH
Confidence 1566789999999999999999999 78899999999999999997543 2233334445677666 6654
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=274.69 Aligned_cols=211 Identities=22% Similarity=0.320 Sum_probs=182.6
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccE-EEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI-EAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~v~~~~ 139 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++ .++.+|++|++++++++
T Consensus 7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~~~~~~ 77 (254)
T 2wsb_A 7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELG---------AAVAARIVADVTDAEAMTAAA 77 (254)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------GGEEEEEECCTTCHHHHHHHH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc---------ccceeEEEEecCCHHHHHHHH
Confidence 46789999999999999999999999999999999999988887766652 256 88999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+ ++++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++.|+||++||..++.+.
T Consensus 78 ~~~~~-~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~----- 151 (254)
T 2wsb_A 78 AEAEA-VAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVN----- 151 (254)
T ss_dssp HHHHH-HSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-----
T ss_pred HHHHh-hCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCC-----
Confidence 99988 899999999999987777888999999999999999999999999999998888999999998876554
Q ss_pred ccccccccCCCCc--ccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-
Q 022369 220 MNVVSGRRKYTSL--MGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF- 293 (298)
Q Consensus 220 ~~~~~~~~~~~~~--~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~- 293 (298)
+.. ..|++||++++.++++++.|+ .++||++++|+||++.|++.+.. ++..+.+....|.+++
T Consensus 152 ----------~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (254)
T 2wsb_A 152 ----------RPQFASSYMASKGAVHQLTRALAAEW-AGRGVRVNALAPGYVATEMTLKMRERPELFETWLDMTPMGRCG 220 (254)
T ss_dssp ----------SSSCBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSHHHHHHHTCHHHHHHHHHTSTTSSCB
T ss_pred ----------CCCcchHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEEecccCchhhhccccChHHHHHHHhcCCCCCCC
Confidence 444 789999999999999999999 77899999999999999987543 2333444445666655
Q ss_pred CCCC
Q 022369 294 NPQE 297 (298)
Q Consensus 294 ~pe~ 297 (298)
+|||
T Consensus 221 ~~~d 224 (254)
T 2wsb_A 221 EPSE 224 (254)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 5553
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=275.89 Aligned_cols=224 Identities=25% Similarity=0.307 Sum_probs=188.9
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..++++|++|||||++|||+++|++|+++|++|++++|+.++.++..+++.+... .++.++++|++|++++++++
T Consensus 9 ~~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~Dl~~~~~~~~~~ 83 (265)
T 1h5q_A 9 TISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG-----VKTKAYQCDVSNTDIVTKTI 83 (265)
T ss_dssp EECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT-----CCEEEEECCTTCHHHHHHHH
T ss_pred CcccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcC-----CeeEEEEeeCCCHHHHHHHH
Confidence 3467899999999999999999999999999999999988777766666655332 36899999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.++++++|+||||||+....++.+.+.++|++.+++|+.++++++++++|.|.+++ .|+||++||..++.+....
T Consensus 84 ~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~- 162 (265)
T 1h5q_A 84 QQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSS- 162 (265)
T ss_dssp HHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEE-
T ss_pred HHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhcccccc-
Confidence 99999999999999999998777788899999999999999999999999999998765 4899999998876553110
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch-HHHHHHHHhhhhccc-CCC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~-~~~~~~~~~~p~~~~-~pe 296 (298)
..+..+...|++||++++.|+++++.|+ .++||+|++|+||+|+|++.+... +..+......|++++ +||
T Consensus 163 -------~~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (265)
T 1h5q_A 163 -------LNGSLTQVFYNSSKAACSNLVKGLAAEW-ASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLNRFAQPE 234 (265)
T ss_dssp -------TTEECSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTTSSCBCGG
T ss_pred -------ccccccccccHHHHHHHHHHHHHHHHHH-HhcCcEEEEEecCccccccccccchhHHHHHHhcCcccCCCCHH
Confidence 0112336789999999999999999999 778999999999999999987653 333444456777776 777
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 235 d 235 (265)
T 1h5q_A 235 E 235 (265)
T ss_dssp G
T ss_pred H
Confidence 5
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=274.14 Aligned_cols=212 Identities=24% Similarity=0.304 Sum_probs=181.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. .+.++.++++|++|+++++++++++.+
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~~~ 76 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHA-----YADKVLRVRADVADEGDVNAAIAATME 76 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTT-----TGGGEEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh-----cCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999998888777665221 124789999999999999999999999
Q ss_pred ccCCccEEEEccCCCCCCC---CCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 145 RLGPLHVLINNAGIFSIGE---PQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~---~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
++|++|+||||||+....+ +.+.+.++|++.+++|+.+++++++.++|.|++++.++||++||..++.+.
T Consensus 77 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------- 149 (250)
T 2cfc_A 77 QFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAF------- 149 (250)
T ss_dssp HHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCC-------
Confidence 9999999999999876555 778899999999999999999999999999998888999999998866554
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC-c--hHHHHHHHHhhhhccc-CCCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD-L--PKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~-~--~~~~~~~~~~~p~~~~-~pe~ 297 (298)
++...|++||++++.|+++++.|+ .++||+|++|+||+|.|++.+. . +...+......|+.++ +|||
T Consensus 150 --------~~~~~Y~~sK~a~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 220 (250)
T 2cfc_A 150 --------PGRSAYTTSKGAVLQLTKSVAVDY-AGSGIRCNAVCPGMIETPMTQWRLDQPELRDQVLARIPQKEIGTAAQ 220 (250)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSTTTHHHHTSHHHHHHHHTTCTTCSCBCHHH
T ss_pred --------CCchhHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeCcCccCccccccCCHHHHHHHHhcCCCCCCcCHHH
Confidence 677889999999999999999999 7789999999999999999754 2 2222333345566655 5553
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-39 Score=278.55 Aligned_cols=202 Identities=15% Similarity=0.126 Sum_probs=172.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEE-E--cCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMA-V--RNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~-~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
||++|||||++|||+++|++|+++|++|+++ + |+.++++++.+++ . . +|+.|++++++++++
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~-~---------~-----~~~~~~~~v~~~~~~ 65 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN-P---------G-----TIALAEQKPERLVDA 65 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS-T---------T-----EEECCCCCGGGHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh-C---------C-----CcccCHHHHHHHHHH
Confidence 5899999999999999999999999999999 6 9988887776554 1 1 122377788889999
Q ss_pred HhcccCCccEEEEccCCCCC---CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 142 WNGRLGPLHVLINNAGIFSI---GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~---~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+.+++|++|+||||||+... .++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||.+++.+.
T Consensus 66 ~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~---- 141 (244)
T 1zmo_A 66 TLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPL---- 141 (244)
T ss_dssp HGGGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCC----
T ss_pred HHHHcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCC----
Confidence 99999999999999999877 78889999999999999999999999999999999888999999999876654
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc---CCch--HHHHHHHH-hhhhcc
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA---RDLP--KIVQAAYH-LIPYFI 292 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~---~~~~--~~~~~~~~-~~p~~~ 292 (298)
+....|++||+++.+|+++|+.|+ .++||+||+|+||+|+|+|. +... +..+.... ..|+.+
T Consensus 142 -----------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~p~~r 209 (244)
T 1zmo_A 142 -----------AYNPLYGPARAATVALVESAAKTL-SRDGILLYAIGPNFFNNPTYFPTSDWENNPELRERVDRDVPLGR 209 (244)
T ss_dssp -----------TTCTTHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCBTTTBCHHHHHHCHHHHHHHHHHCTTCS
T ss_pred -----------CCchHHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEeeCCCcCCcccccccccchHHHHHHHhcCCCCCC
Confidence 677889999999999999999999 78899999999999999997 4432 22333444 567777
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 210 ~~~pe~ 215 (244)
T 1zmo_A 210 LGRPDE 215 (244)
T ss_dssp CBCHHH
T ss_pred CcCHHH
Confidence 6 7764
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=286.86 Aligned_cols=216 Identities=36% Similarity=0.564 Sum_probs=170.0
Q ss_pred CCCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHH
Q 022369 56 NPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSV 135 (298)
Q Consensus 56 ~~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v 135 (298)
.+.++.+++||++|||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|++|++++
T Consensus 7 ~~~~~~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dl~d~~~v 77 (291)
T 3rd5_A 7 TAADLPSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM---------AGQVEVRELDLQDLSSV 77 (291)
T ss_dssp CGGGCCCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS---------SSEEEEEECCTTCHHHH
T ss_pred ChhhccCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---------cCCeeEEEcCCCCHHHH
Confidence 345567899999999999999999999999999999999999998887776554 24799999999999999
Q ss_pred HHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 136 VRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 136 ~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++++++ +++|+||||||+.. +..+.+.++|++.+++|+.|+++++++++|.|.+ +||++||.+++.+..
T Consensus 78 ~~~~~~~----~~iD~lv~nAg~~~--~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~----riv~isS~~~~~~~~ 147 (291)
T 3rd5_A 78 RRFADGV----SGADVLINNAGIMA--VPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD----RVVTVSSMAHWPGRI 147 (291)
T ss_dssp HHHHHTC----CCEEEEEECCCCCS--CCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE----EEEEECCGGGTTCCC
T ss_pred HHHHHhc----CCCCEEEECCcCCC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh----heeEeechhhccCCC
Confidence 9998876 78999999999864 4467789999999999999999999999999975 899999999887765
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCC--cEEEEeeCCccccCccCCchHHHHHHHHhhhhccc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESG--INVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIF 293 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~g--I~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~~~ 293 (298)
...+... ...++++...|++||+|+.+|+++++.|+ .++| |+|++|+||+|+|++.+..++.........|..++
T Consensus 148 ~~~~~~~--~~~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~g~~i~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~ 224 (291)
T 3rd5_A 148 NLEDLNW--RSRRYSPWLAYSQSKLANLLFTSELQRRL-TAAGSPLRALAAHPGYSHTNLQGASGRKLGDALMSAATRVV 224 (291)
T ss_dssp CSSCTTC--SSSCCCHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCCEEEEECCSGGGSCC--------------------
T ss_pred Ccccccc--cccCCCCcchHHHHHHHHHHHHHHHHHHH-hhCCCCEEEEEeeCCCCccccccccchHHHHHHHHHHHHHH
Confidence 4443322 22456778899999999999999999999 6566 99999999999999988765443333333444433
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=286.07 Aligned_cols=211 Identities=11% Similarity=0.038 Sum_probs=173.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHH-cCCEEEEEEcCchHHH------------HHHHHHHHhhcCCCCCccEEEEEcCC
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAE-SGAHVVMAVRNLKAAN------------ELIQKWQEEWSGKGLPLNIEAMELDL 129 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~-~G~~Vil~~r~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~D~ 129 (298)
-.+|++|||||++|||+++|+.|++ .|++|++++|+.+..+ .+.+.+.+. +.++..+.+|+
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~------G~~a~~i~~Dv 118 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQK------GLYAKSINGDA 118 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHT------TCCEEEEESCT
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhc------CCceEEEECCC
Confidence 4579999999999999999999999 9999999998765432 223333331 24788999999
Q ss_pred CCHHHHHHHHHHHhcccCCccEEEEccCCC-------------CCCCC---------------------CccChhhHHHH
Q 022369 130 LSLDSVVRFSEAWNGRLGPLHVLINNAGIF-------------SIGEP---------------------QKFSKDGYEEH 175 (298)
Q Consensus 130 s~~~~v~~~~~~~~~~~g~idilVnnag~~-------------~~~~~---------------------~~~~~~~~~~~ 175 (298)
+|+++++++++++.+++|+||+||||||+. ..+++ .+.+.++|+++
T Consensus 119 td~~~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~ 198 (405)
T 3zu3_A 119 FSDEIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDST 198 (405)
T ss_dssp TSHHHHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHH
Confidence 999999999999999999999999999985 23454 67899999999
Q ss_pred HhhhchHHH-HHHHHHhhh-hhcCCCCeEEEEcCCccccCCCCcccccccccccCCCCc--ccchhhHHHHHHHHHHHHH
Q 022369 176 MQVNHLAPA-LLSILLFPS-LIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSL--MGYSGSKLAQIKFSSILQK 251 (298)
Q Consensus 176 ~~vN~~~~~-~l~~~~lp~-m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~asKaa~~~l~~~l~~ 251 (298)
+++|..+.| .+++++++. |++ ++|+|||+||..+..+. +.+ ..|++||+++.+|+++|+.
T Consensus 199 v~Vn~~~~~~~~~~~~~~~~m~~-~gG~IVniSSi~~~~~~---------------p~~~~~aY~AaKaal~~ltrsLA~ 262 (405)
T 3zu3_A 199 VAVMGGEDWQMWIDALLDAGVLA-EGAQTTAFTYLGEKITH---------------DIYWNGSIGAAKKDLDQKVLAIRE 262 (405)
T ss_dssp HHHHSSHHHHHHHHHHHHHTCEE-EEEEEEEEECCCCGGGT---------------TTTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHhhchhHHHHHHHHHHHHhhhh-CCcEEEEEeCchhhCcC---------------CCccchHHHHHHHHHHHHHHHHHH
Confidence 999999998 888887764 554 46999999999876654 666 8899999999999999999
Q ss_pred HcCCCC-CcEEEEeeCCccccCccCCchH--HHHHHHHhhhhccc-CCCC
Q 022369 252 RLPAES-GINVVCVSPGIVSTNVARDLPK--IVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 252 e~~~~~-gI~v~~v~Pg~v~T~~~~~~~~--~~~~~~~~~p~~~~-~pe~ 297 (298)
|+ +++ |||||+|+||+|.|++...++. .+.... ..|++++ +|||
T Consensus 263 El-a~~~GIRVNaVaPG~i~T~~s~~ip~~p~y~~~l-~~~mkr~G~~Ed 310 (405)
T 3zu3_A 263 SL-AAHGGGDARVSVLKAVVSQASSAIPMMPLYLSLL-FKVMKEKGTHEG 310 (405)
T ss_dssp HH-HTTTSCEEEEEECCCCCCHHHHTSTTHHHHHHHH-HHHHHHHTCCCC
T ss_pred Hh-CcccCeEEEEEEeCCCcCchhhcCCCCcHHHHHH-HHHHhcCCCcHH
Confidence 99 888 9999999999999999877653 222211 2277777 7775
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-38 Score=272.07 Aligned_cols=214 Identities=29% Similarity=0.413 Sum_probs=186.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+... .++.++.+|++|++++++++++
T Consensus 4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~ 78 (248)
T 2pnf_A 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYG-----VKAHGVEMNLLSEESINKAFEE 78 (248)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHC-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcC-----CceEEEEccCCCHHHHHHHHHH
Confidence 46789999999999999999999999999999999999988888777755321 3688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+.+|++|+||||||+....++.+.+.++|++.+++|+.+++++++.++|.|++++.++||++||..+..+.
T Consensus 79 ~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------- 151 (248)
T 2pnf_A 79 IYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFTGN------- 151 (248)
T ss_dssp HHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHHCC-------
T ss_pred HHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcCCC-------
Confidence 9999999999999999987777788899999999999999999999999999998888999999998766554
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHH-HHHHHhhhhccc-CCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIV-QAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~-~~~~~~~p~~~~-~pe 296 (298)
++...|++||++++.|+++++.|+ .+.||++++++||+++|++.....+.. +......|..++ +|+
T Consensus 152 --------~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (248)
T 2pnf_A 152 --------VGQVNYSTTKAGLIGFTKSLAKEL-APRNVLVNAVAPGFIETDMTAVLSEEIKQKYKEQIPLGRFGSPE 219 (248)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTTSSCBCHH
T ss_pred --------CCCchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeceecCchhhhccHHHHHHHHhcCCCCCccCHH
Confidence 667889999999999999999999 778999999999999999987654432 333344566555 554
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=272.84 Aligned_cols=211 Identities=25% Similarity=0.325 Sum_probs=183.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEE-EEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVM-AVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
||++|||||++|||+++|++|+++|++|++ .+|+.++++++.+++++. +.++.++++|++|+++++++++++.
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY------GGQAITFGGDVSKEADVEAMMKTAI 74 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH------TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc------CCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999999999999 489988888887777653 1378899999999999999999999
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+++|++|+||||||+....++.+.+.++|++.+++|+.++++++++++|.|.+++.|+||++||..+..+.
T Consensus 75 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~--------- 145 (244)
T 1edo_A 75 DAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGN--------- 145 (244)
T ss_dssp HHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC---------
T ss_pred HHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCC---------
Confidence 99999999999999987777888999999999999999999999999999998888999999999766554
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHHhhhhccc-CCCC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~p~~~~-~pe~ 297 (298)
+....|++||+++.+|+++++.|+ .++||+|++|+||+++|++.+...+. .+......|++++ +|||
T Consensus 146 ------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~d 214 (244)
T 1edo_A 146 ------IGQANYAAAKAGVIGFSKTAAREG-ASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRTGQPEN 214 (244)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSCTTCSCBCHHH
T ss_pred ------CCCccchhhHHHHHHHHHHHHHHh-hhcCCEEEEEeeCccccchhhhcChHHHHHHhhcCCCCCCCCHHH
Confidence 677889999999999999999999 77899999999999999997765432 2333345666655 5543
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-39 Score=278.50 Aligned_cols=204 Identities=21% Similarity=0.278 Sum_probs=174.8
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|++|||||++|||+++|++|+++|++|++++|+.++++++.+ +.... .++..+ |+++++++++++.++
T Consensus 2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~~------~~~~~~-----d~~~v~~~~~~~~~~ 69 (254)
T 1zmt_A 2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAETY------PQLKPM-----SEQEPAELIEAVTSA 69 (254)
T ss_dssp CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHHC------TTSEEC-----CCCSHHHHHHHHHHH
T ss_pred eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhcC------CcEEEE-----CHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999988887765 54421 233333 667788889999999
Q ss_pred cCCccEEEEccCCC-CCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 146 LGPLHVLINNAGIF-SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 146 ~g~idilVnnag~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
+|++|+||||||+. ...++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||..++.+.
T Consensus 70 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~---------- 139 (254)
T 1zmt_A 70 YGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPW---------- 139 (254)
T ss_dssp HSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCC----------
T ss_pred hCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCC----------
Confidence 99999999999997 6677889999999999999999999999999999998888999999999876654
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcc---------ccCccCCchHHHHHHHHhhhhccc-C
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIV---------STNVARDLPKIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v---------~T~~~~~~~~~~~~~~~~~p~~~~-~ 294 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+| +|++.+..++..+......|+.++ +
T Consensus 140 -----~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~~~~~~~~~~T~~~~~~~~~~~~~~~~~p~~~~~~ 213 (254)
T 1zmt_A 140 -----KELSTYTSARAGACTLANALSKEL-GEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGT 213 (254)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSSSCBC
T ss_pred -----CCchHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecCccccccccccCCCcccccChHHHHHHhccCCCCCCcC
Confidence 677889999999999999999999 788999999999999 998877655444445556677766 6
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 214 p~d 216 (254)
T 1zmt_A 214 QKE 216 (254)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=274.20 Aligned_cols=215 Identities=20% Similarity=0.181 Sum_probs=184.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++... +.++.++.+|++|++++++++++
T Consensus 31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~Dl~~~~~~~~~~~~ 104 (279)
T 3ctm_A 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTY------GVHSKAYKCNISDPKSVEETISQ 104 (279)
T ss_dssp CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHH------CSCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc------CCcceEEEeecCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999988887777666542 13688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCC-CCCC-ccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 142 WNGRLGPLHVLINNAGIFSI-GEPQ-KFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~-~~~~-~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+.+.+|++|+||||||+... .++. +.+.++|++.+++|+.|++.+++.++|.|++++.|+||++||..+..+.
T Consensus 105 ~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~----- 179 (279)
T 3ctm_A 105 QEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVN----- 179 (279)
T ss_dssp HHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC------
T ss_pred HHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCC-----
Confidence 99999999999999998765 6666 7889999999999999999999999999998888999999999866541
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH-HHHHHHHhhhhccc-CCCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK-IVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~-~~~~~~~~~p~~~~-~pe~ 297 (298)
..+....|++||++++.|+++++.|+ .++| +|++|+||+++|++.+...+ ..+.+....|.+++ +|||
T Consensus 180 --------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~-~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~p~~~~~~~~d 249 (279)
T 3ctm_A 180 --------IPQLQAPYNTAKAACTHLAKSLAIEW-APFA-RVNTISPGYIDTDITDFASKDMKAKWWQLTPLGREGLTQE 249 (279)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHT-TTTC-EEEEEEECSBSSTTTSSCCHHHHHHHHHHSTTCSCBCGGG
T ss_pred --------CCCCcccHHHHHHHHHHHHHHHHHHh-cccC-CEEEEeccCCccccccccChHHHHHHHHhCCccCCcCHHH
Confidence 02667789999999999999999999 7788 99999999999999865433 33444456787776 7776
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=273.97 Aligned_cols=194 Identities=26% Similarity=0.323 Sum_probs=175.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++... .++.++.+|++|++++++++++
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~ 75 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTP-------DQIQFFQHDSSDEDGWTKLFDA 75 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT-------TTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcc-------CceEEEECCCCCHHHHHHHHHH
Confidence 577899999999999999999999999999999999988887776665321 3689999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCC-CeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSP-SRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~-g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+.+|++|+||||||+....++.+.+.++|++.+++|+.|++++++.++|.|++++. ++||++||..++.+.
T Consensus 76 ~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~------ 149 (251)
T 1zk4_A 76 TEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD------ 149 (251)
T ss_dssp HHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC------
T ss_pred HHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCC------
Confidence 9999999999999999987778888999999999999999999999999999998776 899999998876654
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCC--CCCcEEEEeeCCccccCccCCch
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPA--ESGINVVCVSPGIVSTNVARDLP 278 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~--~~gI~v~~v~Pg~v~T~~~~~~~ 278 (298)
+....|++||++++.|+++++.|+ . +.||++++|+||++.|++.+..+
T Consensus 150 ---------~~~~~Y~~sK~a~~~~~~~~a~e~-~~~~~~i~v~~v~Pg~v~t~~~~~~~ 199 (251)
T 1zk4_A 150 ---------PSLGAYNASKGAVRIMSKSAALDC-ALKDYDVRVNTVHPGYIKTPLVDDLP 199 (251)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHH-HHTTCSEEEEEEEECCBCCHHHHTST
T ss_pred ---------CCCccchHHHHHHHHHHHHHHHHh-cccCCCeEEEEEeeCcCcchhhhhcC
Confidence 677889999999999999999998 5 78999999999999999977653
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=273.40 Aligned_cols=183 Identities=16% Similarity=0.155 Sum_probs=159.1
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|++|||||++|||+++|++|+++|++|++++|+.++++++.+++ +.++.++.+|++++++++++++++.+.
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~v~~~~~~~~~~ 72 (230)
T 3guy_A 2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL---------SNNVGYRARDLASHQEVEQLFEQLDSI 72 (230)
T ss_dssp -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC---------SSCCCEEECCTTCHHHHHHHHHSCSSC
T ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH---------hhccCeEeecCCCHHHHHHHHHHHhhc
Confidence 68999999999999999999999999999999998888776554 136889999999999999999887654
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
.|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++ ++||++||..++.+.
T Consensus 73 ---~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~iv~isS~~~~~~~----------- 137 (230)
T 3guy_A 73 ---PSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQP-VNVVMIMSTAAQQPK----------- 137 (230)
T ss_dssp ---CSEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CEEEEECCGGGTSCC-----------
T ss_pred ---CCEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEeecccCCCC-----------
Confidence 39999999998888889999999999999999999999999999998866 499999999876655
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+..
T Consensus 138 ----~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~ 184 (230)
T 3guy_A 138 ----AQESTYCAVKWAVKGLIESVRLEL-KGKPMKIIAVYPGGMATEFWETS 184 (230)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHT-TTSSCEEEEEEECCC--------
T ss_pred ----CCCchhHHHHHHHHHHHHHHHHHH-HhcCeEEEEEECCcccChHHHhc
Confidence 778899999999999999999999 88899999999999999997754
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=274.13 Aligned_cols=213 Identities=25% Similarity=0.405 Sum_probs=165.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEE-EcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|++|||||++|||+++|++|+++|++|+++ +|+.+.++++.+++... +.++.++.+|++|+++++++++
T Consensus 2 ~l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~ 75 (247)
T 2hq1_A 2 QLKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAA------GINVVVAKGDVKNPEDVENMVK 75 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHT------TCCEEEEESCTTSHHHHHHHHH
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhc------CCcEEEEECCCCCHHHHHHHHH
Confidence 3678999999999999999999999999999999 67888888877777542 2378999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+.+|++|+||||||+....++.+.+.++|++.+++|+.++++++++++|.|++++.|+||++||..+..+.
T Consensus 76 ~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 149 (247)
T 2hq1_A 76 TAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGN------ 149 (247)
T ss_dssp HHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC-------------
T ss_pred HHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCC------
Confidence 99999999999999999987677788899999999999999999999999999998888999999998766554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~p~~~~-~pe 296 (298)
+....|++||++++.|+++++.|+ .+.||+|++|+||+++|++.+..++. .+.+....|..++ +||
T Consensus 150 ---------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (247)
T 2hq1_A 150 ---------AGQANYAASKAGLIGFTKSIAKEF-AAKGIYCNAVAPGIIKTDMTDVLPDKVKEMYLNNIPLKRFGTPE 217 (247)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTSTTSSCBCHH
T ss_pred ---------CCCcHhHHHHHHHHHHHHHHHHHH-HHcCcEEEEEEEEEEeccchhhcchHHHHHHHhhCCCCCCCCHH
Confidence 667889999999999999999999 77899999999999999987665433 2333345566555 554
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-39 Score=277.83 Aligned_cols=199 Identities=21% Similarity=0.240 Sum_probs=170.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHH-cCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAE-SGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~-~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.++|++|||||++|||+++|++|++ .|++|++++|+.+.. ...+.++++|++|+++++++++.
T Consensus 2 ~~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~----------------~~~~~~~~~Dv~~~~~v~~~~~~ 65 (244)
T 4e4y_A 2 NAMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS----------------AENLKFIKADLTKQQDITNVLDI 65 (244)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC----------------CTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc----------------cccceEEecCcCCHHHHHHHHHH
Confidence 3579999999999999999999999 788999999985410 12578999999999999999965
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+. ++++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|+++ |+||++||..++.+.
T Consensus 66 ~~--~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~--g~iv~~sS~~~~~~~------- 134 (244)
T 4e4y_A 66 IK--NVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVG--ASIVFNGSDQCFIAK------- 134 (244)
T ss_dssp TT--TCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEE--EEEEEECCGGGTCCC-------
T ss_pred HH--hCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccC--cEEEEECCHHHccCC-------
Confidence 54 6899999999999888888999999999999999999999999999999774 799999999876665
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH------------HHHHHHHhhh
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK------------IVQAAYHLIP 289 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~------------~~~~~~~~~p 289 (298)
+....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|++.+.... ..+......|
T Consensus 135 --------~~~~~Y~asKaa~~~~~~~la~e~-~~~gi~v~~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 205 (244)
T 4e4y_A 135 --------PNSFAYTLSKGAIAQMTKSLALDL-AKYQIRVNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFP 205 (244)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEESCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHTTST
T ss_pred --------CCCchhHHHHHHHHHHHHHHHHHH-HHcCeEEEEEecCccCchhhHHHHHhhhhhcCCCHHHHHHHHhhcCC
Confidence 778899999999999999999999 8889999999999999999765422 2333444667
Q ss_pred hccc-CCCC
Q 022369 290 YFIF-NPQE 297 (298)
Q Consensus 290 ~~~~-~pe~ 297 (298)
++++ +|||
T Consensus 206 ~~r~~~p~d 214 (244)
T 4e4y_A 206 LNRIAQPQE 214 (244)
T ss_dssp TSSCBCHHH
T ss_pred CCCCcCHHH
Confidence 7776 6664
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=273.01 Aligned_cols=214 Identities=22% Similarity=0.285 Sum_probs=186.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC-chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN-LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|++|||||++|||+++|++|+++|++|++++|+ .++++++.+++... +.++.++.+|++|+++++++++
T Consensus 4 ~l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~ 77 (258)
T 3afn_B 4 DLKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRAD------GGDAAFFAADLATSEACQQLVD 77 (258)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHT------TCEEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhc------CCceEEEECCCCCHHHHHHHHH
Confidence 4678999999999999999999999999999999999 88888888777653 2478999999999999999999
Q ss_pred HHhcccCCccEEEEccCC-CCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC--C---CeEEEEcCCcccc-C
Q 022369 141 AWNGRLGPLHVLINNAGI-FSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS--P---SRIINVNSVMHYV-G 213 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~-~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~--~---g~Iv~isS~~~~~-~ 213 (298)
++.+++|++|+||||||+ ....++.+.+.++|++.+++|+.++++++++++|.|.+++ . ++||++||..+.. +
T Consensus 78 ~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~ 157 (258)
T 3afn_B 78 EFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGG 157 (258)
T ss_dssp HHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCC
T ss_pred HHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCC
Confidence 999999999999999998 5566778889999999999999999999999999998654 3 8999999987655 3
Q ss_pred CCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch-HHHHHHHHhhhhcc
Q 022369 214 FVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIPYFI 292 (298)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~-~~~~~~~~~~p~~~ 292 (298)
. ++...|++||++++.++++++.|+ .++||+|++|+||++.|++.+... +..+......|+.+
T Consensus 158 ~---------------~~~~~Y~~sK~a~~~~~~~~~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~ 221 (258)
T 3afn_B 158 G---------------PGAGLYGAAKAFLHNVHKNWVDFH-TKDGVRFNIVSPGTVDTAFHADKTQDVRDRISNGIPMGR 221 (258)
T ss_dssp C---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSGGGTTCCHHHHHHHHTTCTTCS
T ss_pred C---------------CCchHHHHHHHHHHHHHHHHHHhh-cccCeEEEEEeCCCcccccccccCHHHHHHHhccCCCCc
Confidence 3 677889999999999999999999 778999999999999999987653 33344445667766
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 222 ~~~~~d 227 (258)
T 3afn_B 222 FGTAEE 227 (258)
T ss_dssp CBCGGG
T ss_pred CCCHHH
Confidence 6 7765
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-40 Score=295.01 Aligned_cols=193 Identities=15% Similarity=0.184 Sum_probs=162.8
Q ss_pred CCCEEEEeCCCC--chHHHHHHHHHHcCCEEEEEEcCch---------HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH
Q 022369 64 NDLTCIVTGSTS--GIGREIARQLAESGAHVVMAVRNLK---------AANELIQKWQEEWSGKGLPLNIEAMELDLLSL 132 (298)
Q Consensus 64 ~~k~vlITGas~--GIG~~~a~~la~~G~~Vil~~r~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 132 (298)
++|++|||||++ |||+++|++|+++|++|++++|++. +++...+.... .......+.++++|+++.
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~Dv~~~ 77 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIID---KDKKMNILDMLPFDASFD 77 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCS---SSCBCCEEEEEECCTTCS
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHh---hccccccccccccccccc
Confidence 479999999986 9999999999999999998887652 22221111110 011113578899999998
Q ss_pred --H------------------HHHHHHHHHhcccCCccEEEEccCCC--CCCCCCccChhhHHHHHhhhchHHHHHHHHH
Q 022369 133 --D------------------SVVRFSEAWNGRLGPLHVLINNAGIF--SIGEPQKFSKDGYEEHMQVNHLAPALLSILL 190 (298)
Q Consensus 133 --~------------------~v~~~~~~~~~~~g~idilVnnag~~--~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~ 190 (298)
+ +++++++++.+++|+||+||||||+. ...++.+.+.++|++.+++|+.|++++++++
T Consensus 78 ~~~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~ 157 (329)
T 3lt0_A 78 TANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYF 157 (329)
T ss_dssp SGGGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 8 99999999999999999999999985 3567889999999999999999999999999
Q ss_pred hhhhhcCCCCeEEEEcCCccccCCCCcccccccccccCCCCcc-cchhhHHHHHHHHHHHHHHcCCC-CCcEEEEeeCCc
Q 022369 191 FPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLM-GYSGSKLAQIKFSSILQKRLPAE-SGINVVCVSPGI 268 (298)
Q Consensus 191 lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~-~Y~asKaa~~~l~~~l~~e~~~~-~gI~v~~v~Pg~ 268 (298)
+|+|+++ |+|||+||.++..+. +... .|++||+|+.+|+++|+.|+ .+ +||+||+|+||+
T Consensus 158 ~p~m~~~--g~Iv~isS~~~~~~~---------------~~~~~~Y~asKaal~~~~~~la~el-~~~~gI~vn~v~PG~ 219 (329)
T 3lt0_A 158 VNIMKPQ--SSIISLTYHASQKVV---------------PGYGGGMSSAKAALESDTRVLAYHL-GRNYNIRINTISAGP 219 (329)
T ss_dssp GGGEEEE--EEEEEEECGGGTSCC---------------TTCTTTHHHHHHHHHHHHHHHHHHH-HHHHCCEEEEEEECC
T ss_pred HHHHhhC--CeEEEEeCccccCCC---------------CcchHHHHHHHHHHHHHHHHHHHHh-CCccCeEEEEEecce
Confidence 9999885 899999999876655 6665 89999999999999999999 77 799999999999
Q ss_pred cccCccCCc
Q 022369 269 VSTNVARDL 277 (298)
Q Consensus 269 v~T~~~~~~ 277 (298)
|+|+|.+..
T Consensus 220 v~T~~~~~~ 228 (329)
T 3lt0_A 220 LKSRAATAI 228 (329)
T ss_dssp CCCHHHHTC
T ss_pred eechhHhhh
Confidence 999998764
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=276.04 Aligned_cols=200 Identities=25% Similarity=0.312 Sum_probs=171.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCC-CCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKG-LPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+...... ...++.++.+|++|+++++++++
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 83 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE 83 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence 56789999999999999999999999999999999999888877666543210000 00368899999999999999999
Q ss_pred HHhcccCCc-cEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcc
Q 022369 141 AWNGRLGPL-HVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 141 ~~~~~~g~i-dilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~ 218 (298)
++.+++|++ |+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|.+++ .|+||++||..+..+.
T Consensus 84 ~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~---- 159 (264)
T 2pd6_A 84 QVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGN---- 159 (264)
T ss_dssp HHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCC----
T ss_pred HHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCC----
Confidence 999999999 9999999998777788899999999999999999999999999998876 7899999998766554
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
++...|++||++++.|+++++.|+ .++||+|++|+||++.|++.+..
T Consensus 160 -----------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~ 206 (264)
T 2pd6_A 160 -----------VGQTNYAASKAGVIGLTQTAAREL-GRHGIRCNSVLPGFIATPMTQKV 206 (264)
T ss_dssp -----------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSCC----
T ss_pred -----------CCChhhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeecccccchhhc
Confidence 677889999999999999999999 77899999999999999997654
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=267.40 Aligned_cols=191 Identities=22% Similarity=0.326 Sum_probs=175.2
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCC-------EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGA-------HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~-------~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
+|++|||||++|||+++|++|+++|+ +|++++|+.++++++.+++... +.++.++.+|++|++++++
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~v~~ 75 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE------GALTDTITADISDMADVRR 75 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT------TCEEEEEECCTTSHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc------CCeeeEEEecCCCHHHHHH
Confidence 68999999999999999999999999 9999999998888887776542 2478999999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
+++++.+++|++|+||||||+....++.+.+.++|++.+++|+.++++++++++|+|++++.|+||++||..++.+.
T Consensus 76 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--- 152 (244)
T 2bd0_A 76 LTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAF--- 152 (244)
T ss_dssp HHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC---
T ss_pred HHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCC---
Confidence 99999999999999999999987777888999999999999999999999999999998888999999999866554
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
++...|++||+++++|+++++.|+ .++||+|++|+||+|.|++.+..
T Consensus 153 ------------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~ 199 (244)
T 2bd0_A 153 ------------RHSSIYCMSKFGQRGLVETMRLYA-RKCNVRITDVQPGAVYTPMWGKV 199 (244)
T ss_dssp ------------TTCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCSTTTCCC
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHHh-hccCcEEEEEECCCccchhhhhc
Confidence 677889999999999999999999 78899999999999999997654
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-37 Score=270.64 Aligned_cols=214 Identities=25% Similarity=0.326 Sum_probs=185.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++... +.++.++.+|++|+++++++++
T Consensus 7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~ 80 (255)
T 1fmc_A 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL------GGQAFACRCDITSEQELSALAD 80 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHh------CCceEEEEcCCCCHHHHHHHHH
Confidence 3578899999999999999999999999999999999999888887777653 1368899999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.++++++|+||||||+....++ +.+.++|++.+++|+.++++++++++|.|++++.++||++||..++.+.
T Consensus 81 ~~~~~~~~~d~vi~~Ag~~~~~~~-~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 153 (255)
T 1fmc_A 81 FAISKLGKVDILVNNAGGGGPKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN------ 153 (255)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC------
T ss_pred HHHHhcCCCCEEEECCCCCCCCCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCC------
Confidence 999999999999999998766555 7889999999999999999999999999998888999999998766544
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc--hHHHHHHHHhhhhccc-CCCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~--~~~~~~~~~~~p~~~~-~pe~ 297 (298)
++...|++||++++.|+++++.|+ .+.||++++++||.+.|++.+.. ++..+......|+.++ +|+|
T Consensus 154 ---------~~~~~Y~~sK~a~~~~~~~~~~~~-~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 223 (255)
T 1fmc_A 154 ---------INMTSYASSKAAASHLVRNMAFDL-GEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQD 223 (255)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCSSCSCBCHHH
T ss_pred ---------CCCcccHHHHHHHHHHHHHHHHHh-hhcCcEEEEEecccCcchhhhhccChHHHHHHHhcCCcccCCCHHH
Confidence 667889999999999999999999 77899999999999999986542 3334444455676655 5543
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=274.31 Aligned_cols=197 Identities=26% Similarity=0.354 Sum_probs=175.7
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+.++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++.... ...++.++.+|++|++++++++
T Consensus 27 m~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~Dl~~~~~v~~~~ 102 (279)
T 1xg5_A 27 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAG----YPGTLIPYRCDLSNEEDILSMF 102 (279)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT----CSSEEEEEECCTTCHHHHHHHH
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcC----CCceEEEEEecCCCHHHHHHHH
Confidence 446789999999999999999999999999999999999999888887776532 1236889999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCC--CeEEEEcCCccccCCCCc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSP--SRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~--g~Iv~isS~~~~~~~~~~ 217 (298)
+++.+.++++|+||||||+....++.+.+.++|++.+++|+.+++.+++.++|.|++++. |+||++||..++..
T Consensus 103 ~~~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~---- 178 (279)
T 1xg5_A 103 SAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRV---- 178 (279)
T ss_dssp HHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSC----
T ss_pred HHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhccc----
Confidence 999999999999999999987778888999999999999999999999999999998763 89999999876521
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCC--CCCcEEEEeeCCccccCcc
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPA--ESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~--~~gI~v~~v~Pg~v~T~~~ 274 (298)
.+.+....|+++|+++.+|+++++.|+ . ..||+|++|+||+|+|++.
T Consensus 179 ---------~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~~~~i~v~~v~Pg~v~t~~~ 227 (279)
T 1xg5_A 179 ---------LPLSVTHFYSATKYAVTALTEGLRQEL-REAQTHIRATCISPGVVETQFA 227 (279)
T ss_dssp ---------CSCGGGHHHHHHHHHHHHHHHHHHHHH-HHTTCCCEEEEEEESCBCSSHH
T ss_pred ---------CCCCCCchhHHHHHHHHHHHHHHHHHH-hhcCCCeEEEEEecCcccchhh
Confidence 122666789999999999999999999 5 7899999999999999984
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=274.48 Aligned_cols=220 Identities=18% Similarity=0.253 Sum_probs=185.3
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
..+..+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+... .++.++.+|++|+++++
T Consensus 18 ~~~~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~Dl~~~~~~~ 92 (302)
T 1w6u_A 18 MLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG-----NKVHAIQCDVRDPDMVQ 92 (302)
T ss_dssp CSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-----SCEEEEECCTTCHHHHH
T ss_pred CCCcccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC-----CceEEEEeCCCCHHHHH
Confidence 3445578999999999999999999999999999999999999999888888766422 36899999999999999
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhh-cCCCCeEEEEcCCccccCCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLI-RGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~-~~~~g~Iv~isS~~~~~~~~ 215 (298)
++++++.+.+|++|+||||||+....++.+.+.++|++.+++|+.++++++++++|.|. +++.++||++||..++.+.
T Consensus 93 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~- 171 (302)
T 1w6u_A 93 NTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS- 171 (302)
T ss_dssp HHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC-
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCC-
Confidence 99999999999999999999987777788899999999999999999999999999998 4556899999999866554
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC-ccCCc-h--HHHHHHHHhhhhc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN-VARDL-P--KIVQAAYHLIPYF 291 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~-~~~~~-~--~~~~~~~~~~p~~ 291 (298)
++...|++||++++.|+++++.|+ .++||+|++|+||++.|+ +.... + ...+......|.+
T Consensus 172 --------------~~~~~Y~~sK~a~~~~~~~la~~~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~p~~ 236 (302)
T 1w6u_A 172 --------------GFVVPSASAKAGVEAMSKSLAAEW-GKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCG 236 (302)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTS
T ss_pred --------------CCcchhHHHHHHHHHHHHHHHHHh-hhcCcEEEEEeeccCCCcchhhhcccchhhHHHHHhcCCcC
Confidence 677889999999999999999999 778999999999999998 54432 1 1122344456766
Q ss_pred cc-CCCC
Q 022369 292 IF-NPQE 297 (298)
Q Consensus 292 ~~-~pe~ 297 (298)
++ +|||
T Consensus 237 ~~~~~~d 243 (302)
T 1w6u_A 237 RLGTVEE 243 (302)
T ss_dssp SCBCHHH
T ss_pred CCCCHHH
Confidence 55 5543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=273.42 Aligned_cols=196 Identities=22% Similarity=0.346 Sum_probs=177.5
Q ss_pred CCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 58 LPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 58 ~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
.+..++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++++. +.++.++.+|++|++++++
T Consensus 24 ~~~~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~v~~ 97 (272)
T 1yb1_A 24 KRRKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL------GAKVHTFVVDCSNREDIYS 97 (272)
T ss_dssp -CCCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHH
T ss_pred CcccccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhc------CCeEEEEEeeCCCHHHHHH
Confidence 3456789999999999999999999999999999999999999888888777653 2378999999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
+++++.+.+|++|+||||||+....++.+.+.++|++.+++|+.|++++++.++|.|++++.|+||++||..++.+.
T Consensus 98 ~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~--- 174 (272)
T 1yb1_A 98 SAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSV--- 174 (272)
T ss_dssp HHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCH---
T ss_pred HHHHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCC---
Confidence 99999999999999999999987777888899999999999999999999999999998888999999999876554
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCC---CCCcEEEEeeCCccccCccC
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPA---ESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~---~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|++||+++++|+++++.|+ . +.||+|++|+||+|+|++.+
T Consensus 175 ------------~~~~~Y~~sK~a~~~l~~~la~e~-~~~~~~gi~v~~v~Pg~v~t~~~~ 222 (272)
T 1yb1_A 175 ------------PFLLAYCSSKFAAVGFHKTLTDEL-AALQITGVKTTCLCPNFVNTGFIK 222 (272)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHH-HHTTCTTEEEEEEEETHHHHCSTT
T ss_pred ------------CCchhHHHHHHHHHHHHHHHHHHH-HHhCCCCeEEEEEeCCcccCCccc
Confidence 667789999999999999999998 4 67999999999999999865
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-38 Score=292.73 Aligned_cols=212 Identities=26% Similarity=0.372 Sum_probs=174.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
..++||++|||||++|||+++|++|+++|++|++++|+... +++.+...+. .+.++.||++|+++++++++
T Consensus 209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~-~~l~~~~~~~--------~~~~~~~Dvtd~~~v~~~~~ 279 (454)
T 3u0b_A 209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA-EDLKRVADKV--------GGTALTLDVTADDAVDKITA 279 (454)
T ss_dssp STTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGH-HHHHHHHHHH--------TCEEEECCTTSTTHHHHHHH
T ss_pred cCCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHHHHHc--------CCeEEEEecCCHHHHHHHHH
Confidence 35689999999999999999999999999999999997432 2222222221 35689999999999999999
Q ss_pred HHhcccCC-ccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGP-LHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~-idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+++|+ ||+||||||+....++.+.+.++|++++++|+.|+++++++++|.|.+++.|+||++||.+++.+.
T Consensus 280 ~~~~~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~----- 354 (454)
T 3u0b_A 280 HVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGN----- 354 (454)
T ss_dssp HHHHHSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCC-----
T ss_pred HHHHHcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCC-----
Confidence 99999986 999999999998888999999999999999999999999999999998889999999999887776
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHH-HHhhhhccc-CCCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAA-YHLIPYFIF-NPQE 297 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~-~~~~p~~~~-~pe~ 297 (298)
+++..|++||+++++|+++|+.|+ .++||+||+|+||+|+|+|.+..+....+. ....|+.++ +|||
T Consensus 355 ----------~g~~~YaasKaal~~l~~~la~e~-~~~gI~vn~v~PG~v~T~~~~~~~~~~~~~~~~~~~l~r~g~ped 423 (454)
T 3u0b_A 355 ----------RGQTNYATTKAGMIGLAEALAPVL-ADKGITINAVAPGFIETKMTEAIPLATREVGRRLNSLFQGGQPVD 423 (454)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECSBCC----------CHHHHHSBTTSSCBCHHH
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEcCcccChhhhhcchhhHHHHHhhccccCCCCHHH
Confidence 778899999999999999999999 788999999999999999988765433322 234566555 5543
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=269.70 Aligned_cols=197 Identities=22% Similarity=0.313 Sum_probs=174.1
Q ss_pred CCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 58 LPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 58 ~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
.+..++++|++|||||++|||+++|++|+++|++|++++|+.+..+++.+++.. ..++.++.+|++|++++++
T Consensus 9 ~~~~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~D~~~~~~~~~ 81 (278)
T 2bgk_A 9 SSTNRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-------PDVISFVHCDVTKDEDVRN 81 (278)
T ss_dssp --CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHH
T ss_pred CCcccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCC-------CCceEEEECCCCCHHHHHH
Confidence 344568899999999999999999999999999999999998877766655421 1268999999999999999
Q ss_pred HHHHHhcccCCccEEEEccCCCCC--CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSI--GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~--~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++++.+++|++|+||||||+... .++.+.+.++|++.+++|+.++++++++++|.|++++.|+||++||..++.+.
T Consensus 82 ~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~- 160 (278)
T 2bgk_A 82 LVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAG- 160 (278)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCC-
T ss_pred HHHHHHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCC-
Confidence 999999999999999999998643 56778899999999999999999999999999998888999999999876554
Q ss_pred CcccccccccccCCC-CcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 216 DTEDMNVVSGRRKYT-SLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~-~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+ ....|++||+++++|+++++.|+ .++||+|++|+||+|.|++.+..
T Consensus 161 --------------~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~ 208 (278)
T 2bgk_A 161 --------------EGVSHVYTATKHAVLGLTTSLCTEL-GEYGIRVNCVSPYIVASPLLTDV 208 (278)
T ss_dssp --------------TTSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCCSCCCCTTS
T ss_pred --------------CCCCcchHHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeceecchhhhhh
Confidence 4 66789999999999999999999 77899999999999999997653
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=304.63 Aligned_cols=189 Identities=23% Similarity=0.289 Sum_probs=168.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc---------hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL---------KAANELIQKWQEEWSGKGLPLNIEAMELDLLSL 132 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 132 (298)
+++||++|||||++|||+++|++|+++|++|++.+|+. +.++++.+++.+.. .++ .+|++|.
T Consensus 5 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g------~~~---~~d~~d~ 75 (604)
T 2et6_A 5 DFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNG------GVA---VADYNNV 75 (604)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTT------CEE---EEECCCT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcC------CeE---EEEcCCH
Confidence 57899999999999999999999999999999998765 67777777776531 132 3588888
Q ss_pred HHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcccc
Q 022369 133 DSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYV 212 (298)
Q Consensus 133 ~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~ 212 (298)
++++++++++.+++|+||+||||||+....++.+++.++|++++++|+.|+|+++|+++|+|++++.|+|||+||.+++.
T Consensus 76 ~~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~ 155 (604)
T 2et6_A 76 LDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLY 155 (604)
T ss_dssp TCHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcC
Confidence 88999999999999999999999999877889999999999999999999999999999999998889999999998776
Q ss_pred CCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 213 GFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+. ++...|++||+|+.+|+++|+.|+ .++||+||+|+|| +.|+|...
T Consensus 156 ~~---------------~~~~~Y~asKaal~~lt~~la~El-~~~gIrVn~v~Pg-~~T~m~~~ 202 (604)
T 2et6_A 156 GN---------------FGQANYASAKSALLGFAETLAKEG-AKYNIKANAIAPL-ARSRMTES 202 (604)
T ss_dssp CC---------------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC-CCCHHHHT
T ss_pred CC---------------CCchHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEccC-CcCccccc
Confidence 65 778889999999999999999999 8899999999998 68988654
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-38 Score=281.94 Aligned_cols=195 Identities=23% Similarity=0.299 Sum_probs=165.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++|++|||||++|||+++|++|+++|++|++++|+.++++...+.+.........+.++.++.+|++|+++++++++++.
T Consensus 1 ~~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 80 (327)
T 1jtv_A 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVT 80 (327)
T ss_dssp CCEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHh
Confidence 36899999999999999999999999999999887666555444443321101112478999999999999999999883
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|+|++++.|+|||+||.+++.+.
T Consensus 81 --~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~--------- 149 (327)
T 1jtv_A 81 --EGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL--------- 149 (327)
T ss_dssp --TSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC---------
T ss_pred --cCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCC---------
Confidence 589999999999987778888999999999999999999999999999998888999999999876654
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|++||+++++|+++|+.|+ .++||+|++|+||+|+|+|.+.
T Consensus 150 ------~~~~~Y~aSK~a~~~~~~~la~el-~~~gI~v~~v~PG~v~T~~~~~ 195 (327)
T 1jtv_A 150 ------PFNDVYCASKFALEGLCESLAVLL-LPFGVHLSLIECGPVHTAFMEK 195 (327)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCC-----
T ss_pred ------CCChHHHHHHHHHHHHHHHHHHHh-hhcCcEEEEEEeCcccChHHhh
Confidence 677889999999999999999999 7889999999999999999765
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=267.99 Aligned_cols=210 Identities=27% Similarity=0.387 Sum_probs=181.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEE-EcCchHHHHHHHHHHHhhcCCCCCccEEE-EEcCCCCHHHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEA-MELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~D~s~~~~v~~~~~~~ 142 (298)
+|++|||||++|||+++|++|+++|++|+++ +|+.++++++.+++.... .++.. +.+|++|+++++++++++
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~~ 74 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRG------SPLVAVLGANLLEAEAATALVHQA 74 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTT------CSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC------CceEEEEeccCCCHHHHHHHHHHH
Confidence 4789999999999999999999999999998 899888888877776531 24566 899999999999999999
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.+.++++|+||||||+....++.+.+.++|++.+++|+.|++++++.++|.|++++.++||++||..+..+.
T Consensus 75 ~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~-------- 146 (245)
T 2ph3_A 75 AEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGN-------- 146 (245)
T ss_dssp HHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC--------
T ss_pred HHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCC--------
Confidence 999999999999999987777788999999999999999999999999999998888999999998766554
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH-HHHHHHHhhhhccc-CCC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK-IVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~-~~~~~~~~~p~~~~-~pe 296 (298)
+....|++||+++.+++++++.|+ .+.||++++|+||++.|++.+..+. ..+......|..++ +|+
T Consensus 147 -------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (245)
T 2ph3_A 147 -------PGQANYVASKAGLIGFTRAVAKEY-AQRGITVNAVAPGFIETEMTERLPQEVKEAYLKQIPAGRFGRPE 214 (245)
T ss_dssp -------SSBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHHTCTTCSCBCHH
T ss_pred -------CCCcchHHHHHHHHHHHHHHHHHH-HHcCeEEEEEEEEeecCcchhhcCHHHHHHHHhcCCCCCCcCHH
Confidence 667889999999999999999999 7789999999999999999766543 23334445565555 554
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=265.31 Aligned_cols=186 Identities=22% Similarity=0.239 Sum_probs=162.6
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.+ +|++|++++++++++
T Consensus 3 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~--------------------------~D~~~~~~v~~~~~~ 56 (223)
T 3uce_A 3 GSDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG--------------------------LDISDEKSVYHYFET 56 (223)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT--------------------------CCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc--------------------------cCCCCHHHHHHHHHH
Confidence 567899999999999999999999999999999999844 899999999999886
Q ss_pred HhcccCCccEEEEccCCC-CCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIF-SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+ |++|+||||||+. ...++.+.+.++|++.+++|+.++++++++++|+|++ +|+||++||..++.+.
T Consensus 57 ~----g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~--~g~iv~~sS~~~~~~~------ 124 (223)
T 3uce_A 57 I----GAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQ--GGSITLTSGMLSRKVV------ 124 (223)
T ss_dssp H----CSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEE--EEEEEEECCGGGTSCC------
T ss_pred h----CCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccC--CeEEEEecchhhccCC------
Confidence 5 8999999999987 5678889999999999999999999999999999976 4799999999866654
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-----HHHHHHhhhhccc-C
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-----VQAAYHLIPYFIF-N 294 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-----~~~~~~~~p~~~~-~ 294 (298)
++...|++||+++++|+++|+.|+ .+ |+||+|+||+|+|++.+..... .+......|++++ +
T Consensus 125 ---------~~~~~Y~asK~a~~~~~~~la~e~-~~--i~vn~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (223)
T 3uce_A 125 ---------ANTYVKAAINAAIEATTKVLAKEL-AP--IRVNAISPGLTKTEAYKGMNADDRDAMYQRTQSHLPVGKVGE 192 (223)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHH-TT--SEEEEEEECSBCSGGGTTSCHHHHHHHHHHHHHHSTTCSCBC
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHhh-cC--cEEEEEEeCCCcchhhhhcchhhHHHHHHHHhhcCCCCCccC
Confidence 778899999999999999999999 54 9999999999999998876432 2334456788777 6
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 193 ~~d 195 (223)
T 3uce_A 193 ASD 195 (223)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=301.36 Aligned_cols=189 Identities=25% Similarity=0.316 Sum_probs=165.2
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||+++|++|+++|++|++.+|+ .++++.+++.+. +.++..+.+|++ ++++++++
T Consensus 318 ~~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~--~~~~~~~~i~~~------g~~~~~~~~Dv~--~~~~~~~~ 387 (604)
T 2et6_A 318 VSLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFK--DATKTVDEIKAA------GGEAWPDQHDVA--KDSEAIIK 387 (604)
T ss_dssp CCCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSS--CCHHHHHHHHHT------TCEEEEECCCHH--HHHHHHHH
T ss_pred cccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCc--cHHHHHHHHHhc------CCeEEEEEcChH--HHHHHHHH
Confidence 36889999999999999999999999999999999874 235555666542 236778888884 45678889
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+++|+||+||||||+....++.+++.++|++++++|+.|+++++|+++|+|++++.|+|||+||.++..+.
T Consensus 388 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~------ 461 (604)
T 2et6_A 388 NVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGN------ 461 (604)
T ss_dssp HHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCC------
T ss_pred HHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCC------
Confidence 99999999999999999987788899999999999999999999999999999999888999999999877665
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
++...|++||+|+.+|+++|+.|+ .++||+||+|+||. +|+|...
T Consensus 462 ---------~~~~~Y~asKaal~~lt~~la~El-~~~gIrVn~v~PG~-~T~m~~~ 506 (604)
T 2et6_A 462 ---------FGQANYSSSKAGILGLSKTMAIEG-AKNNIKVNIVAPHA-ETAMTLS 506 (604)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECC-CCCC---
T ss_pred ---------CCChhHHHHHHHHHHHHHHHHHHh-CccCeEEEEEcCCC-CCccccc
Confidence 777889999999999999999999 88999999999995 9999764
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=262.47 Aligned_cols=188 Identities=24% Similarity=0.308 Sum_probs=163.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. ++.++.+|++|+++++++++++.
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------~~~~~~~D~~~~~~~~~~~~~~~ 73 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELE----------GALPLPGDVREEGDWARAVAAME 73 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST----------TCEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh----------hceEEEecCCCHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999888776654431 57889999999999999999999
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+.+|++|+||||||+....++.+.+.++|++.+++|+.+++++++.++|.|++++.|+||++||..++.+.
T Consensus 74 ~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~--------- 144 (234)
T 2ehd_A 74 EAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPF--------- 144 (234)
T ss_dssp HHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSCC---------
T ss_pred HHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCCC---------
Confidence 99999999999999987777888999999999999999999999999999999888999999999866554
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
++...|+++|+++.+|+++++.|+ .++||++++|+||+++|++....
T Consensus 145 ------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~ 191 (234)
T 2ehd_A 145 ------KGGAAYNASKFGLLGLAGAAMLDL-REANVRVVNVLPGSVDTGFAGNT 191 (234)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEECC----------
T ss_pred ------CCCchhhHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeCCCcCCccccc
Confidence 677889999999999999999999 77899999999999999987643
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-37 Score=272.71 Aligned_cols=196 Identities=20% Similarity=0.354 Sum_probs=174.6
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++....... .+.++.++++|++|++++++++
T Consensus 13 ~~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~ 91 (303)
T 1yxm_A 13 PGLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPT-KQARVIPIQCNIRNEEEVNNLV 91 (303)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTT-CCCCEEEEECCTTCHHHHHHHH
T ss_pred cCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcccc-CCccEEEEecCCCCHHHHHHHH
Confidence 346889999999999999999999999999999999999999998888876532211 1247999999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+.+|++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|.+++.|+||++||.. ..+.
T Consensus 92 ~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~~~----- 165 (303)
T 1yxm_A 92 KSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAGF----- 165 (303)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTCC-----
T ss_pred HHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-ccCC-----
Confidence 9999999999999999998776778888999999999999999999999999977666679999999986 4333
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
+....|+++|+++.+|+++++.|+ .++||+|++|+||+|.|++
T Consensus 166 ----------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~ 208 (303)
T 1yxm_A 166 ----------PLAVHSGAARAGVYNLTKSLALEW-ACSGIRINCVAPGVIYSQT 208 (303)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCCTG
T ss_pred ----------CcchhhHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCCcccch
Confidence 667889999999999999999999 7789999999999999995
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-37 Score=264.07 Aligned_cols=206 Identities=25% Similarity=0.354 Sum_probs=173.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .+.++.+|++|+++++++++
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~----------~~~~~~~D~~~~~~~~~~~~- 72 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP----------GIEPVCVDLGDWEATERALG- 72 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST----------TCEEEECCTTCHHHHHHHHT-
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC----------CCCEEEEeCCCHHHHHHHHH-
Confidence 5789999999999999999999999999999999999888776654421 24567999999999988776
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
.++++|+||||||+....++.+.+.++|++.+++|+.++++++++++|.|++++ .|+||++||..++.+.
T Consensus 73 ---~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 143 (244)
T 3d3w_A 73 ---SVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV------ 143 (244)
T ss_dssp ---TCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------
T ss_pred ---HcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCC------
Confidence 568999999999988777788889999999999999999999999999998876 7999999998766554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC---chHHHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD---LPKIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~---~~~~~~~~~~~~p~~~~-~pe 296 (298)
++...|++||++++.|+++++.|+ .++||+|++|+||+|.|++.+. .+...+.+....|.+++ +||
T Consensus 144 ---------~~~~~Y~~sK~a~~~~~~~la~e~-~~~~i~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (244)
T 3d3w_A 144 ---------TNHSVYCSTKGALDMLTKVMALEL-GPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVE 213 (244)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBTTTTHHHHSCSTTHHHHHHHTCTTCSCBCHH
T ss_pred ---------CCCchHHHHHHHHHHHHHHHHHHh-cccCeEEEEEEeccccccchhhhccChHHHHHHHhhCCCCCCcCHH
Confidence 677889999999999999999999 7789999999999999998652 12233344455676655 554
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 214 d 214 (244)
T 3d3w_A 214 H 214 (244)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=277.19 Aligned_cols=190 Identities=19% Similarity=0.258 Sum_probs=170.1
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEE---------EcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCC
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMA---------VRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLS 131 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~---------~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~ 131 (298)
.+++||++|||||++|||+++|++|+++|++|+++ +|+.++++++.+++.... .. ..+|+++
T Consensus 5 ~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~------~~---~~~D~~~ 75 (319)
T 1gz6_A 5 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG------GK---AVANYDS 75 (319)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT------CE---EEEECCC
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhC------Ce---EEEeCCC
Confidence 46789999999999999999999999999999996 457788888888776531 12 2589999
Q ss_pred HHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccc
Q 022369 132 LDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY 211 (298)
Q Consensus 132 ~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~ 211 (298)
.++++++++++.+.+|++|+||||||+....++.+.+.++|+..+++|+.|+++++++++|+|++++.|+|||+||.++.
T Consensus 76 ~~~~~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~ 155 (319)
T 1gz6_A 76 VEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGI 155 (319)
T ss_dssp GGGHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhc
Confidence 99999999999999999999999999987777888999999999999999999999999999998888999999998776
Q ss_pred cCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 212 VGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
.+. ++...|++||+++.+|+++|+.|+ .++||+||+|+||.+ |++.+.
T Consensus 156 ~~~---------------~~~~~Y~aSK~a~~~~~~~la~el-~~~gI~vn~v~PG~~-t~~~~~ 203 (319)
T 1gz6_A 156 YGN---------------FGQANYSAAKLGLLGLANTLVIEG-RKNNIHCNTIAPNAG-SRMTET 203 (319)
T ss_dssp HCC---------------TTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEEECC-STTTGG
T ss_pred cCC---------------CCCHHHHHHHHHHHHHHHHHHHHh-cccCEEEEEEeCCCc-cccccc
Confidence 654 667889999999999999999999 788999999999998 888664
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=267.94 Aligned_cols=204 Identities=22% Similarity=0.285 Sum_probs=167.1
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
+.+..+++||++|||||++|||+++|++|+++|++|++++|+.+.+++ + ..+.++ +|+ .++++
T Consensus 11 ~~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~----~----------~~~~~~-~D~--~~~~~ 73 (249)
T 1o5i_A 11 HHMELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR----S----------GHRYVV-CDL--RKDLD 73 (249)
T ss_dssp -----CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH----T----------CSEEEE-CCT--TTCHH
T ss_pred hhHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHh----h----------CCeEEE-eeH--HHHHH
Confidence 344567899999999999999999999999999999999999733221 1 146667 999 55677
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
++++++. ++|+||||||+....++.+.+.++|++.+++|+.|++++++.++|.|++++.|+|||+||..++.+.
T Consensus 74 ~~~~~~~----~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 147 (249)
T 1o5i_A 74 LLFEKVK----EVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI-- 147 (249)
T ss_dssp HHHHHSC----CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--
T ss_pred HHHHHhc----CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcCCC--
Confidence 7777653 7999999999887777889999999999999999999999999999998888999999999876554
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-hHHHH-HHHHhhhhccc-
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-PKIVQ-AAYHLIPYFIF- 293 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-~~~~~-~~~~~~p~~~~- 293 (298)
+....|++||+++.+|+++++.|+ .++||+||+|+||+|+|++.... ++..+ .+....|++++
T Consensus 148 -------------~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~p~~~~~ 213 (249)
T 1o5i_A 148 -------------ENLYTSNSARMALTGFLKTLSFEV-APYGITVNCVAPGWTETERVKELLSEEKKKQVESQIPMRRMA 213 (249)
T ss_dssp -------------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTSTTSSCB
T ss_pred -------------CCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCCCccCcccccchhhHHHHHHhcCCCCCCc
Confidence 677889999999999999999999 78899999999999999987543 22222 34445677666
Q ss_pred CCCC
Q 022369 294 NPQE 297 (298)
Q Consensus 294 ~pe~ 297 (298)
+|||
T Consensus 214 ~~~d 217 (249)
T 1o5i_A 214 KPEE 217 (249)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 6654
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=265.18 Aligned_cols=192 Identities=24% Similarity=0.347 Sum_probs=172.9
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
..++++|++|||||++|||+++|++|+++|++|++++| +.++++++.+++++. +.++.++.+|++|+++++++
T Consensus 16 ~~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~------~~~~~~~~~D~~~~~~~~~~ 89 (274)
T 1ja9_A 16 SKPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL------GAQGVAIQADISKPSEVVAL 89 (274)
T ss_dssp CCTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHH
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHH
Confidence 35678999999999999999999999999999999999 778888877777652 24688999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccc-cCCCCc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY-VGFVDT 217 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~-~~~~~~ 217 (298)
++++.+++|++|+||||||+....++.+.+.++|++.+++|+.++++++++++|.|++ + |+||++||..++ .+.
T Consensus 90 ~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~-~~iv~~sS~~~~~~~~--- 164 (274)
T 1ja9_A 90 FDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRR-G-GRIILTSSIAAVMTGI--- 164 (274)
T ss_dssp HHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEE-E-EEEEEECCGGGTCCSC---
T ss_pred HHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-C-CEEEEEcChHhccCCC---
Confidence 9999999999999999999987777788999999999999999999999999999983 3 899999998766 333
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|++||++++.|+++++.|+ ...||++++|+||.+.|++.+
T Consensus 165 ------------~~~~~Y~~sK~a~~~~~~~~~~e~-~~~gi~v~~v~Pg~v~t~~~~ 209 (274)
T 1ja9_A 165 ------------PNHALYAGSKAAVEGFCRAFAVDC-GAKGVTVNCIAPGGVKTDMFD 209 (274)
T ss_dssp ------------CSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBSSHHHH
T ss_pred ------------CCCchHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEeeCcccccchh
Confidence 667789999999999999999999 778999999999999999865
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-38 Score=270.71 Aligned_cols=187 Identities=26% Similarity=0.272 Sum_probs=139.9
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|++ |++|++++|+.++++++.+. ..+.++.+|+++.++ .+.+.+
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~~-----------~~~~~~~~D~~~~~~-~~~~~~ 68 (245)
T 3e9n_A 2 SLKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAEI-----------EGVEPIESDIVKEVL-EEGGVD 68 (245)
T ss_dssp ----CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHTS-----------TTEEEEECCHHHHHH-TSSSCG
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHhh-----------cCCcceecccchHHH-HHHHHH
Confidence 46789999999999999999999998 99999999998887765431 258899999999887 555555
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
..+.++++|+||||||+....++.+.+.++|++.+++|+.|+++++++++|.|++++ |+||++||.+++.+.
T Consensus 69 ~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~------- 140 (245)
T 3e9n_A 69 KLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINSGAGNGPH------- 140 (245)
T ss_dssp GGTTCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC---------------
T ss_pred HHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcCcccccCC-------
Confidence 667789999999999998888888899999999999999999999999999998765 999999999876655
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~ 278 (298)
+....|++||+|+++|+++|+.|+ .++||+|++|+||+|+|++.+...
T Consensus 141 --------~~~~~Y~asK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~ 188 (245)
T 3e9n_A 141 --------PGNTIYAASKHALRGLADAFRKEE-ANNGIRVSTVSPGPTNTPMLQGLM 188 (245)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCC---------
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCCccCchhhhhh
Confidence 778889999999999999999999 788999999999999999987653
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-37 Score=266.45 Aligned_cols=185 Identities=20% Similarity=0.278 Sum_probs=160.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCE-EEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH-HHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAH-VVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSL-DSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~-Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~-~~v~~~~ 139 (298)
++++|++|||||++|||+++|++|+++|++ |++++|+.+. +..+++.+..+ +.++.++.+|++|+ +++++++
T Consensus 2 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~~~~~----~~~~~~~~~D~~~~~~~~~~~~ 75 (254)
T 1sby_A 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAINP----KVNITFHTYDVTVPVAESKKLL 75 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHCT----TSEEEEEECCTTSCHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHHHhCC----CceEEEEEEecCCChHHHHHHH
Confidence 467899999999999999999999999996 9999998742 22334443322 24789999999998 9999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC---CCeEEEEcCCccccCCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS---PSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~---~g~Iv~isS~~~~~~~~~ 216 (298)
+++.+++|++|+||||||+. +.++|++.+++|+.|+++++++++|.|.+++ .|+||++||.+++.+.
T Consensus 76 ~~~~~~~g~id~lv~~Ag~~--------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~-- 145 (254)
T 1sby_A 76 KKIFDQLKTVDILINGAGIL--------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI-- 145 (254)
T ss_dssp HHHHHHHSCCCEEEECCCCC--------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC--
T ss_pred HHHHHhcCCCCEEEECCccC--------CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCC--
Confidence 99999999999999999973 4578999999999999999999999998764 6899999999876554
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|++||+++++|+++++.|+ .++||+|++|+||+|+|++.+.
T Consensus 146 -------------~~~~~Y~~sK~a~~~~~~~la~~~-~~~gi~v~~v~Pg~v~t~~~~~ 191 (254)
T 1sby_A 146 -------------HQVPVYSASKAAVVSFTNSLAKLA-PITGVTAYSINPGITRTPLVHT 191 (254)
T ss_dssp -------------TTSHHHHHHHHHHHHHHHHHHHHH-HHHSEEEEEEEECSEESHHHHS
T ss_pred -------------CCchHHHHHHHHHHHHHHHHHHHh-ccCCeEEEEEecCCccCccccc
Confidence 677889999999999999999998 6679999999999999998654
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=259.78 Aligned_cols=205 Identities=26% Similarity=0.399 Sum_probs=173.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++ ..+.++.+|++|+++++++++
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~D~~~~~~~~~~~~- 72 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC----------PGIEPVCVDLGDWDATEKALG- 72 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS----------TTCEEEECCTTCHHHHHHHHT-
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----------cCCCcEEecCCCHHHHHHHHH-
Confidence 577899999999999999999999999999999999988777655432 134567999999999988876
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
.++++|+||||||+....++.+.+.++|++.+++|+.++++++++++|.|.+++ .|+||++||..++.+.
T Consensus 73 ---~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~------ 143 (244)
T 1cyd_A 73 ---GIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF------ 143 (244)
T ss_dssp ---TCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------
T ss_pred ---HcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcCCC------
Confidence 568999999999988777788899999999999999999999999999998876 7999999998766554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC---chHHHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD---LPKIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~---~~~~~~~~~~~~p~~~~-~pe 296 (298)
+....|++||++++.|+++++.|+ .++||++++|+||.+.|++.+. .+...+......|++++ +|+
T Consensus 144 ---------~~~~~Y~~sK~a~~~~~~~~a~~~-~~~gi~v~~v~pg~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (244)
T 1cyd_A 144 ---------PNLITYSSTKGAMTMLTKAMAMEL-GPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVE 213 (244)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTTSSCBCHH
T ss_pred ---------CCcchhHHHHHHHHHHHHHHHHHh-hhcCeEEEEEecCcccCccccccccCHHHHHHHHhcCCccCCCCHH
Confidence 667889999999999999999999 7789999999999999998652 22333444445566555 544
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=263.51 Aligned_cols=186 Identities=25% Similarity=0.364 Sum_probs=164.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+++|++|||||++|||+++|++|+++|++|++++|+.+++++..+++.+... +.++.++.+|++|+++++++++++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~ 80 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE----PQKTLFIQCDVADQQQLRDTFRKV 80 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSC----GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcC----CCceEEEecCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999888877766644211 236889999999999999999999
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC---CCeEEEEcCCccccCCCCccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS---PSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~---~g~Iv~isS~~~~~~~~~~~~ 219 (298)
.+++|++|+||||||+.. .++|++.+++|+.+++.+++.++|.|++++ .|+|||+||..++.+.
T Consensus 81 ~~~~g~id~lv~~Ag~~~--------~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~----- 147 (267)
T 2gdz_A 81 VDHFGRLDILVNNAGVNN--------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV----- 147 (267)
T ss_dssp HHHHSCCCEEEECCCCCC--------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC-----
T ss_pred HHHcCCCCEEEECCCCCC--------hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCC-----
Confidence 999999999999999742 467999999999999999999999998753 6899999999876654
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHH--HHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSIL--QKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l--~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
+....|++||+++.+|++++ +.|+ .+.||+||+|+||+|+|++...
T Consensus 148 ----------~~~~~Y~~sK~a~~~~~~~~ala~e~-~~~gi~v~~v~Pg~v~t~~~~~ 195 (267)
T 2gdz_A 148 ----------AQQPVYCASKHGIVGFTRSAALAANL-MNSGVRLNAICPGFVNTAILES 195 (267)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEEEESCBSSHHHHG
T ss_pred ----------CCCchHHHHHHHHHHHHHHHHHHHHh-ccCCcEEEEEecCcCcchhhhc
Confidence 67788999999999999995 6888 7889999999999999998654
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-37 Score=274.29 Aligned_cols=218 Identities=16% Similarity=0.143 Sum_probs=165.6
Q ss_pred CCCCCCEEEEeCC--CCchHHHHHHHHHHcCCEEEEEEcCchH------HH-HHHHHHHHhhcCCCCCccEEEEEcCC--
Q 022369 61 PPVNDLTCIVTGS--TSGIGREIARQLAESGAHVVMAVRNLKA------AN-ELIQKWQEEWSGKGLPLNIEAMELDL-- 129 (298)
Q Consensus 61 ~~~~~k~vlITGa--s~GIG~~~a~~la~~G~~Vil~~r~~~~------~~-~~~~~~~~~~~~~~~~~~~~~~~~D~-- 129 (298)
.+++||++||||| ++|||+++|++|+++|++|++++|++.. .+ ...+++.+ ....+....+.++.+|+
T Consensus 5 ~~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~ 83 (315)
T 2o2s_A 5 IDLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRK-LPDGSLIEFAGVYPLDAAF 83 (315)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHB-CTTSCBCCCSCEEECCTTC
T ss_pred ccCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhh-hhccccccccccccccccc
Confidence 3578999999999 8999999999999999999999987421 11 01111211 11100000123444443
Q ss_pred ----------C--------CHHHHHHHHHHHhcccCCccEEEEccCCCC--CCCCCccChhhHHHHHhhhchHHHHHHHH
Q 022369 130 ----------L--------SLDSVVRFSEAWNGRLGPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHLAPALLSIL 189 (298)
Q Consensus 130 ----------s--------~~~~v~~~~~~~~~~~g~idilVnnag~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~ 189 (298)
+ |+++++++++++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.|+++++++
T Consensus 84 ~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~ 163 (315)
T 2o2s_A 84 DKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQH 163 (315)
T ss_dssp SSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred cccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHH
Confidence 3 356899999999999999999999999863 46778899999999999999999999999
Q ss_pred HhhhhhcCCCCeEEEEcCCccccCCCCcccccccccccCCCCc-ccchhhHHHHHHHHHHHHHHcCCC-CCcEEEEeeCC
Q 022369 190 LFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSL-MGYSGSKLAQIKFSSILQKRLPAE-SGINVVCVSPG 267 (298)
Q Consensus 190 ~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~asKaa~~~l~~~l~~e~~~~-~gI~v~~v~Pg 267 (298)
++|+|++ +|+|||+||.++..+. +.. ..|++||+|+.+|+++|+.|+ .+ +||+||+|+||
T Consensus 164 ~~~~m~~--~g~Iv~isS~~~~~~~---------------~~~~~~Y~asKaal~~l~~~la~el-~~~~gIrvn~v~PG 225 (315)
T 2o2s_A 164 FGPIMNE--GGSAVTLSYLAAERVV---------------PGYGGGMSSAKAALESDTRTLAWEA-GQKYGVRVNAISAG 225 (315)
T ss_dssp HSTTEEE--EEEEEEEEEGGGTSCC---------------TTCCTTHHHHHHHHHHHHHHHHHHH-HHHTCCEEEEEEEC
T ss_pred HHHHHhc--CCEEEEEecccccccC---------------CCccHHHHHHHHHHHHHHHHHHHHh-CcccCeEEEEEecc
Confidence 9999976 3899999999866554 555 479999999999999999999 64 89999999999
Q ss_pred ccccCccCCch---------HHHHHHHHhhhhccc-CCCC
Q 022369 268 IVSTNVARDLP---------KIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 268 ~v~T~~~~~~~---------~~~~~~~~~~p~~~~-~pe~ 297 (298)
+|+|+|.+... +..+......|++++ +|||
T Consensus 226 ~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~ped 265 (315)
T 2o2s_A 226 PLKSRAASAIGKSGEKSFIDYAIDYSYNNAPLRRDLHSDD 265 (315)
T ss_dssp CCCCHHHHHTTCSSSSCHHHHHHHHHHHHSSSCCCCCHHH
T ss_pred cccchhhhhccccccchhHHHHHHHHhccCCCCCCCCHHH
Confidence 99999865332 111223345687776 7764
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=262.84 Aligned_cols=179 Identities=13% Similarity=0.094 Sum_probs=161.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.++|++|||||++|||+++|++|+++|++|++++|+.++.+ ....++.+|++|+++++++++++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~----------------~~~~~~~~D~~~~~~v~~~~~~~ 68 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA----------------SASVIVKMTDSFTEQADQVTAEV 68 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS----------------SEEEECCCCSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc----------------CCcEEEEcCCCCHHHHHHHHHHH
Confidence 45799999999999999999999999999999999976532 13567899999999999999999
Q ss_pred hccc--CCccEEEEccCCCCCCCC-CccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 143 NGRL--GPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 143 ~~~~--g~idilVnnag~~~~~~~-~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
.+++ |++|+||||||+....++ .+.+.++|++.+++|+.+++.++++++|.|++ +|+||++||.+++.+.
T Consensus 69 ~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~--~g~iv~isS~~~~~~~----- 141 (241)
T 1dhr_A 69 GKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE--GGLLTLAGAKAALDGT----- 141 (241)
T ss_dssp HHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEEEEEECCGGGGSCC-----
T ss_pred HHHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhcc--CCEEEEECCHHHccCC-----
Confidence 9999 799999999998776677 78889999999999999999999999999976 4899999999876654
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCC--CCCcEEEEeeCCccccCccC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPA--ESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~--~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|++||+++++|+++++.|+ . ++||+||+|+||+|+|+|.+
T Consensus 142 ----------~~~~~Y~asK~a~~~~~~~la~e~-~~~~~gi~v~~v~PG~v~T~~~~ 188 (241)
T 1dhr_A 142 ----------PGMIGYGMAKGAVHQLCQSLAGKN-SGMPSGAAAIAVLPVTLDTPMNR 188 (241)
T ss_dssp ----------TTBHHHHHHHHHHHHHHHHHTSTT-SSCCTTCEEEEEEESCEECHHHH
T ss_pred ----------CCchHHHHHHHHHHHHHHHHHHHh-ccCCCCeEEEEEecCcccCcccc
Confidence 777889999999999999999999 6 88999999999999999864
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=262.80 Aligned_cols=192 Identities=25% Similarity=0.320 Sum_probs=170.1
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+... .++.++.+|++|+++++++++
T Consensus 24 ~~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~d~~~v~~~~~ 98 (286)
T 1xu9_A 24 EMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGA-----ASAHYIAGTMEDMTFAEQFVA 98 (286)
T ss_dssp GGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-----SEEEEEECCTTCHHHHHHHHH
T ss_pred hhcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCC-----CceEEEeCCCCCHHHHHHHHH
Confidence 357899999999999999999999999999999999999999988887765421 368899999999999999999
Q ss_pred HHhcccCCccEEEEc-cCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINN-AGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnn-ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+++|++|+|||| ||+.. .++.+.+.+++++.+++|+.|++.++++++|.|+++ .|+||++||.++..+.
T Consensus 99 ~~~~~~g~iD~li~naag~~~-~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~g~iv~isS~~~~~~~----- 171 (286)
T 1xu9_A 99 QAGKLMGGLDMLILNHITNTS-LNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS-NGSIVVVSSLAGKVAY----- 171 (286)
T ss_dssp HHHHHHTSCSEEEECCCCCCC-CCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEEEGGGTSCC-----
T ss_pred HHHHHcCCCCEEEECCccCCC-CccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHC-CCEEEEECCcccccCC-----
Confidence 999999999999999 57654 345567899999999999999999999999998765 4899999999866554
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcC-CCCCcEEEEeeCCccccCcc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLP-AESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~-~~~gI~v~~v~Pg~v~T~~~ 274 (298)
++...|++||+++++|+++++.|+. ...||+|++|+||+|+|++.
T Consensus 172 ----------~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~~ 217 (286)
T 1xu9_A 172 ----------PMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETA 217 (286)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHH
T ss_pred ----------CCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChhH
Confidence 7778899999999999999999983 35799999999999999985
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-37 Score=264.70 Aligned_cols=182 Identities=12% Similarity=0.092 Sum_probs=158.8
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+..+..+|++|||||++|||+++|++|+++|++|++++|+.++.+ -..+.+|++|+++++++
T Consensus 16 ~~~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~------------------~~~~~~d~~d~~~v~~~ 77 (251)
T 3orf_A 16 PRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA------------------DHSFTIKDSGEEEIKSV 77 (251)
T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS------------------SEEEECSCSSHHHHHHH
T ss_pred ccccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc------------------ccceEEEeCCHHHHHHH
Confidence 344556899999999999999999999999999999999976432 13578999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCC-CCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGE-PQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~-~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
++++.+++|++|+||||||+....+ +.+.+.++|++.+++|+.|+++++++++|.|++ +|+||++||.+++.+.
T Consensus 78 ~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~iv~isS~~~~~~~--- 152 (251)
T 3orf_A 78 IEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQ--GGLFVLTGASAALNRT--- 152 (251)
T ss_dssp HHHHHTTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEEEEEECCGGGGSCC---
T ss_pred HHHHHHHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhcc--CCEEEEEechhhccCC---
Confidence 9999999999999999999876554 677889999999999999999999999999976 5899999999876655
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcC-CCCCcEEEEeeCCccccCccC
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLP-AESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~-~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|++||+|+++|+++++.|+. .++||+|++|+||+|+|++.+
T Consensus 153 ------------~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~~~ 199 (251)
T 3orf_A 153 ------------SGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPTNR 199 (251)
T ss_dssp ------------TTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHHHH
T ss_pred ------------CCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcchh
Confidence 7788899999999999999999982 378999999999999999854
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=270.01 Aligned_cols=217 Identities=16% Similarity=0.177 Sum_probs=166.2
Q ss_pred CCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHH-------HHHHHHHHhhcCCCCCccEEEEEcC----
Q 022369 62 PVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAAN-------ELIQKWQEEWSGKGLPLNIEAMELD---- 128 (298)
Q Consensus 62 ~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~D---- 128 (298)
+++||++|||||+ +|||+++|++|+++|++|++++|++..-. +..+++ +.....+.......+.+|
T Consensus 5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 83 (297)
T 1d7o_A 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQS-RVLPDGSLMEIKKVYPLDAVFD 83 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGG-GBCTTSSBCCEEEEEEECTTCC
T ss_pred ccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhh-hhhccccccccccccccceecc
Confidence 5789999999999 99999999999999999999998742110 000011 001000000012344443
Q ss_pred ----CC------------CHHHHHHHHHHHhcccCCccEEEEccCCCC--CCCCCccChhhHHHHHhhhchHHHHHHHHH
Q 022369 129 ----LL------------SLDSVVRFSEAWNGRLGPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHLAPALLSILL 190 (298)
Q Consensus 129 ----~s------------~~~~v~~~~~~~~~~~g~idilVnnag~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~ 190 (298)
++ ++++++++++++.+++|++|+||||||+.. ..++.+.+.++|++.+++|+.|++++++++
T Consensus 84 ~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~ 163 (297)
T 1d7o_A 84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF 163 (297)
T ss_dssp SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred chhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHH
Confidence 32 266899999999999999999999999754 567788999999999999999999999999
Q ss_pred hhhhhcCCCCeEEEEcCCccccCCCCcccccccccccCCCCc-ccchhhHHHHHHHHHHHHHHcCCC-CCcEEEEeeCCc
Q 022369 191 FPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSL-MGYSGSKLAQIKFSSILQKRLPAE-SGINVVCVSPGI 268 (298)
Q Consensus 191 lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~asKaa~~~l~~~l~~e~~~~-~gI~v~~v~Pg~ 268 (298)
+|+|++ +|+|||+||.++..+. +.. ..|++||+|+.+|+++|+.|+ .+ +||+||+|+||+
T Consensus 164 ~~~m~~--~g~iv~isS~~~~~~~---------------~~~~~~Y~asKaa~~~~~~~la~e~-~~~~gi~vn~v~PG~ 225 (297)
T 1d7o_A 164 LPIMNP--GGASISLTYIASERII---------------PGYGGGMSSAKAALESDTRVLAFEA-GRKQNIRVNTISAGP 225 (297)
T ss_dssp GGGEEE--EEEEEEEECGGGTSCC---------------TTCTTTHHHHHHHHHHHHHHHHHHH-HHHHCCEEEEEEECC
T ss_pred HHHhcc--CceEEEEeccccccCC---------------CCcchHHHHHHHHHHHHHHHHHHHh-CcccCcEEEEEeccc
Confidence 999976 4899999998876554 555 589999999999999999999 64 799999999999
Q ss_pred cccCccCCc---hHHHHHHHHhhhhccc-CCCC
Q 022369 269 VSTNVARDL---PKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 269 v~T~~~~~~---~~~~~~~~~~~p~~~~-~pe~ 297 (298)
|+|+|.+.. ++..+......|+.++ +|||
T Consensus 226 v~T~~~~~~~~~~~~~~~~~~~~p~~r~~~ped 258 (297)
T 1d7o_A 226 LGSRAAKAIGFIDTMIEYSYNNAPIQKTLTADE 258 (297)
T ss_dssp CBCCCSSCCSHHHHHHHHHHHHSSSCCCBCHHH
T ss_pred cccchhhhccccHHHHHHhhccCCCCCCCCHHH
Confidence 999998764 2223333445677766 6664
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-36 Score=260.20 Aligned_cols=178 Identities=15% Similarity=0.099 Sum_probs=160.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++|++|||||++|||+++|++|+++|++|++++|+.++.+ ....++.+|++|+++++++++++.
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~----------------~~~~~~~~D~~~~~~~~~~~~~~~ 65 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA----------------DSNILVDGNKNWTEQEQSILEQTA 65 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS----------------SEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc----------------cccEEEeCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999976532 135678899999999999999999
Q ss_pred ccc--CCccEEEEccCCCCCCCC-CccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 144 GRL--GPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 144 ~~~--g~idilVnnag~~~~~~~-~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+ |++|+||||||+....++ .+.+.++|++.+++|+.++++++++++|.|++ .|+||++||..++.+.
T Consensus 66 ~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~iv~isS~~~~~~~------ 137 (236)
T 1ooe_A 66 SSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP--GGLLQLTGAAAAMGPT------ 137 (236)
T ss_dssp HHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEEEEEECCGGGGSCC------
T ss_pred HHhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhcc--CCEEEEECchhhccCC------
Confidence 998 799999999998776677 77889999999999999999999999999975 4899999999876554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCC--CCCcEEEEeeCCccccCccC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPA--ESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~--~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+....|++||+++.+|+++++.|+ . ++||+||+|+||+|+|++.+
T Consensus 138 ---------~~~~~Y~~sK~a~~~~~~~la~e~-~~~~~gi~v~~v~Pg~v~t~~~~ 184 (236)
T 1ooe_A 138 ---------PSMIGYGMAKAAVHHLTSSLAAKD-SGLPDNSAVLTIMPVTLDTPMNR 184 (236)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHSTT-SSCCTTCEEEEEEESCBCCHHHH
T ss_pred ---------CCcHHHHHHHHHHHHHHHHHHHHh-cccCCCeEEEEEecCcccCcchh
Confidence 777889999999999999999999 6 88999999999999999854
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=274.03 Aligned_cols=195 Identities=12% Similarity=0.055 Sum_probs=165.2
Q ss_pred CCCCEEEEeCCCCchHHH--HHHHHHHcCCEEEEEEcCchH------------HHHHHHHHHHhhcCCCCCccEEEEEcC
Q 022369 63 VNDLTCIVTGSTSGIGRE--IARQLAESGAHVVMAVRNLKA------------ANELIQKWQEEWSGKGLPLNIEAMELD 128 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~--~a~~la~~G~~Vil~~r~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D 128 (298)
..||++|||||++|||++ +|++|++.|++|++++|+.+. .+.+.+.+.+. +.++.++++|
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~~~~~~~~D 131 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKK------GLVAKNFIED 131 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHT------TCCEEEEESC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHc------CCcEEEEEee
Confidence 578999999999999999 999999999999999997544 23333333321 2478999999
Q ss_pred CCCHHHHHHHHHHHhcccCCccEEEEccCCC-------------CCCCC---------------------CccChhhHHH
Q 022369 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIF-------------SIGEP---------------------QKFSKDGYEE 174 (298)
Q Consensus 129 ~s~~~~v~~~~~~~~~~~g~idilVnnag~~-------------~~~~~---------------------~~~~~~~~~~ 174 (298)
++|+++++++++++.+++|+||+||||||+. ..+++ .+.+.++|+.
T Consensus 132 vtd~~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~ 211 (418)
T 4eue_A 132 AFSNETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEE 211 (418)
T ss_dssp TTCHHHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHH
Confidence 9999999999999999999999999999985 22333 4579999999
Q ss_pred HHhhhchHHH-HHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccccCCCCc--ccchhhHHHHHHHHHHHHH
Q 022369 175 HMQVNHLAPA-LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSL--MGYSGSKLAQIKFSSILQK 251 (298)
Q Consensus 175 ~~~vN~~~~~-~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~--~~Y~asKaa~~~l~~~l~~ 251 (298)
.+++|..+.+ .+++++++.+..+++|+||++||..+..+. |.+ ..|++||+|+.+|+++|+.
T Consensus 212 ~~~vn~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~---------------p~~~~~aY~ASKaAL~~ltrsLA~ 276 (418)
T 4eue_A 212 TRKVMGGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTY---------------KIYREGTIGIAKKDLEDKAKLINE 276 (418)
T ss_dssp HHHHHSSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGT---------------TTTTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCC---------------CccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 788888876655567999999999866554 666 8999999999999999999
Q ss_pred HcCCC-CCcEEEEeeCCccccCccCCchH
Q 022369 252 RLPAE-SGINVVCVSPGIVSTNVARDLPK 279 (298)
Q Consensus 252 e~~~~-~gI~v~~v~Pg~v~T~~~~~~~~ 279 (298)
|+ ++ +|||||+|+||+|.|++...++.
T Consensus 277 EL-a~~~GIrVN~V~PG~v~T~~s~~ip~ 304 (418)
T 4eue_A 277 KL-NRVIGGRAFVSVNKALVTKASAYIPT 304 (418)
T ss_dssp HH-HHHHSCEEEEEECCCCCCHHHHTSTT
T ss_pred Hh-CCccCeEEEEEECCcCcChhhhcCCC
Confidence 99 88 89999999999999999887753
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=273.60 Aligned_cols=215 Identities=16% Similarity=0.176 Sum_probs=137.9
Q ss_pred CCCCCEEEEeCC--CCchHHHHHHHHHHcCCEEEEEEcCc-----------hHHHH-----------HHHHHHHhhcCCC
Q 022369 62 PVNDLTCIVTGS--TSGIGREIARQLAESGAHVVMAVRNL-----------KAANE-----------LIQKWQEEWSGKG 117 (298)
Q Consensus 62 ~~~~k~vlITGa--s~GIG~~~a~~la~~G~~Vil~~r~~-----------~~~~~-----------~~~~~~~~~~~~~ 117 (298)
+++||++||||| ++|||+++|++|+++|++|++++|++ +++++ +.+++.+....
T Consensus 6 ~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 83 (319)
T 2ptg_A 6 DLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVD-- 83 (319)
T ss_dssp CCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC---------------------------------
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhcccc--
Confidence 478999999999 89999999999999999999998763 22221 22222211000
Q ss_pred CCccEEEEEcC--CCC------------------HHHHHHHHHHHhcccCCccEEEEccCCCC--CCCCCccChhhHHHH
Q 022369 118 LPLNIEAMELD--LLS------------------LDSVVRFSEAWNGRLGPLHVLINNAGIFS--IGEPQKFSKDGYEEH 175 (298)
Q Consensus 118 ~~~~~~~~~~D--~s~------------------~~~v~~~~~~~~~~~g~idilVnnag~~~--~~~~~~~~~~~~~~~ 175 (298)
.....++.+| +++ +++++++++++.+++|+||+||||||+.. ..++.+.+.++|++.
T Consensus 84 -~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~ 162 (319)
T 2ptg_A 84 -LVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAA 162 (319)
T ss_dssp --CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHH
T ss_pred -ccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHH
Confidence 0012344443 333 44899999999999999999999999763 567888999999999
Q ss_pred HhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccccCCCCc-ccchhhHHHHHHHHHHHHHHcC
Q 022369 176 MQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSL-MGYSGSKLAQIKFSSILQKRLP 254 (298)
Q Consensus 176 ~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~asKaa~~~l~~~l~~e~~ 254 (298)
+++|+.|+++++++++|+|++ +|+|||+||.++..+. +.. ..|++||+|+.+|+++|+.|+
T Consensus 163 ~~vN~~g~~~l~~~~~~~m~~--~g~Iv~isS~~~~~~~---------------~~~~~~Y~asKaal~~l~~~la~el- 224 (319)
T 2ptg_A 163 VSSSSYSFVSLLQHFLPLMKE--GGSALALSYIASEKVI---------------PGYGGGMSSAKAALESDCRTLAFEA- 224 (319)
T ss_dssp HHHHTHHHHHHHHHHGGGEEE--EEEEEEEEECC---------------------------------THHHHHHHHHHH-
T ss_pred HhHhhHHHHHHHHHHHHHHhc--CceEEEEecccccccc---------------CccchhhHHHHHHHHHHHHHHHHHh-
Confidence 999999999999999999976 3899999999876554 555 579999999999999999999
Q ss_pred CC-CCcEEEEeeCCccccCccCCchH-----HH----HHHHHhhhhccc-CCCC
Q 022369 255 AE-SGINVVCVSPGIVSTNVARDLPK-----IV----QAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 255 ~~-~gI~v~~v~Pg~v~T~~~~~~~~-----~~----~~~~~~~p~~~~-~pe~ 297 (298)
.+ +||+||+|+||+|+|+|.+.... .. +......|++++ +|||
T Consensus 225 ~~~~gIrvn~v~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~pee 278 (319)
T 2ptg_A 225 GRARAVRVNCISAGPLKSRAASAIGKAGDKTFIDLAIDYSEANAPLQKELESDD 278 (319)
T ss_dssp HHHHCCEEEEEEECCCC-------------------------------CCCHHH
T ss_pred ccccCeeEEEEeeCCccChhhhhcccccchhhHHHHHHHHhccCCCCCCCCHHH
Confidence 64 79999999999999999765431 00 111234677766 6664
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=293.75 Aligned_cols=196 Identities=21% Similarity=0.234 Sum_probs=155.8
Q ss_pred CCCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc---------CchHHHHHHHHHHHhhcCCCCCccEEEEE
Q 022369 56 NPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR---------NLKAANELIQKWQEEWSGKGLPLNIEAME 126 (298)
Q Consensus 56 ~~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (298)
++.+..+++||++|||||++|||+++|++|+++|++|++++| +.++++++.+++.+.. .. ..
T Consensus 10 ~~~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~------~~---~~ 80 (613)
T 3oml_A 10 SSDGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAG------GE---AV 80 (613)
T ss_dssp -----CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTT------CC---EE
T ss_pred CcccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhC------Ce---EE
Confidence 445567899999999999999999999999999999999988 7788888888876632 12 24
Q ss_pred cCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEc
Q 022369 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVN 206 (298)
Q Consensus 127 ~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~is 206 (298)
+|++|.++++++++++.+.+|+||+||||||+....++.+.+.++|++++++|+.|+++++++++|+|++++.|+|||+|
T Consensus 81 ~D~~d~~~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~is 160 (613)
T 3oml_A 81 ADYNSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTS 160 (613)
T ss_dssp ECCCCGGGHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred EEeCCHHHHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 79999999999999999999999999999999888889999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 207 SVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 207 S~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
|.++..+. ++...|++||+|+.+|+++|+.|+ .++||+||+|+||.+ |+|....
T Consensus 161 S~a~~~~~---------------~~~~~Y~asKaal~~lt~~la~e~-~~~gI~vn~v~Pg~~-t~~~~~~ 214 (613)
T 3oml_A 161 SNSGIYGN---------------FGQVNYTAAKMGLIGLANTVAIEG-ARNNVLCNVIVPTAA-SRMTEGI 214 (613)
T ss_dssp CHHHHHCC---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEEC-------CCC
T ss_pred CHHHcCCC---------------CCChHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEECCCC-Chhhhhc
Confidence 99877665 778889999999999999999999 888999999999975 6776653
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=258.20 Aligned_cols=201 Identities=24% Similarity=0.322 Sum_probs=169.9
Q ss_pred CCCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcC---CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH
Q 022369 56 NPLPLPPVNDLTCIVTGSTSGIGREIARQLAESG---AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSL 132 (298)
Q Consensus 56 ~~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G---~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 132 (298)
+..+..++++|++|||||++|||+++|++|+++| ++|++++|+.++++.+ +++.+. +.++.++.+|++|+
T Consensus 12 ~~~~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~------~~~~~~~~~Dl~~~ 84 (267)
T 1sny_A 12 SGLVPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKN------HSNIHILEIDLRNF 84 (267)
T ss_dssp --------CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHH------CTTEEEEECCTTCG
T ss_pred ccccccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhcc------CCceEEEEecCCCh
Confidence 3445567889999999999999999999999999 9999999998876644 344332 13789999999999
Q ss_pred HHHHHHHHHHhcccC--CccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC------C-----
Q 022369 133 DSVVRFSEAWNGRLG--PLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG------S----- 198 (298)
Q Consensus 133 ~~v~~~~~~~~~~~g--~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~------~----- 198 (298)
++++++++++.+.+| ++|+||||||+.. ..++.+.+.+++++.+++|+.++++++++++|.|.++ +
T Consensus 85 ~~v~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~ 164 (267)
T 1sny_A 85 DAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVG 164 (267)
T ss_dssp GGHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTT
T ss_pred HHHHHHHHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCC
Confidence 999999999999998 8999999999876 6677888999999999999999999999999999876 3
Q ss_pred CCeEEEEcCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 199 PSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 199 ~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
.|+||++||..++.+.. +.++...|++||+++++|+++++.|+ .++||+|++|+||+|+|+|...
T Consensus 165 ~~~iv~isS~~~~~~~~------------~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~ 229 (267)
T 1sny_A 165 RAAIINMSSILGSIQGN------------TDGGMYAYRTSKSALNAATKSLSVDL-YPQRIMCVSLHPGWVKTDMGGS 229 (267)
T ss_dssp TCEEEEECCGGGCSTTC------------CSCCCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEECCCSBCSTTTCT
T ss_pred CceEEEEecccccccCC------------CCCCchHHHHHHHHHHHHHHHHHHHh-hcCCcEEEEeCCcceecCCCCC
Confidence 68999999988765531 12356779999999999999999999 7789999999999999999754
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-35 Score=252.57 Aligned_cols=195 Identities=25% Similarity=0.348 Sum_probs=164.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++|++|||||++|||+++|++|+++| ++|++++|+.++++++.+. .+.++.++.+|++|++++++++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~---------~~~~~~~~~~D~~~~~~~~~~~~~ 72 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI---------KDSRVHVLPLTVTCDKSLDTFVSK 72 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC---------CCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhc---------cCCceEEEEeecCCHHHHHHHHHH
Confidence 57899999999999999999999999 9999999998887654221 124789999999999999999999
Q ss_pred HhcccC--CccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC------C-----CCeEEEEcC
Q 022369 142 WNGRLG--PLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG------S-----PSRIINVNS 207 (298)
Q Consensus 142 ~~~~~g--~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~------~-----~g~Iv~isS 207 (298)
+.+++| ++|+||||||+.. ..++.+.+.+++++.+++|+.+++.++++++|.|+++ + .++||++||
T Consensus 73 ~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS 152 (250)
T 1yo6_A 73 VGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISS 152 (250)
T ss_dssp HHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECC
T ss_pred HHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEecc
Confidence 999998 9999999999987 6778889999999999999999999999999999876 5 789999999
Q ss_pred CccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 208 VMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
..++.+.... ....++...|++||++++.|+++++.|+ .++||+|++|+||+|+|++.+.
T Consensus 153 ~~~~~~~~~~--------~~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~Pg~v~t~~~~~ 212 (250)
T 1yo6_A 153 GLGSITDNTS--------GSAQFPVLAYRMSKAAINMFGRTLAVDL-KDDNVLVVNFCPGWVQTNLGGK 212 (250)
T ss_dssp GGGCSTTCCS--------TTSSSCBHHHHHHHHHHHHHHHHHHHHT-GGGTCEEEEEECCCC-------
T ss_pred CccccCCccc--------ccccCCccHHHHHHHHHHHHHHHHHHHh-ccCCeEEEEEcCCceecCCCCC
Confidence 9876653210 0111456789999999999999999999 7789999999999999999764
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=251.74 Aligned_cols=198 Identities=24% Similarity=0.297 Sum_probs=168.1
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|++|||||++|||+++|++|+++|++|++++|+.+ . .++.++++|++|+++++++++++ +
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~-----------------~~~~~~~~D~~~~~~~~~~~~~~-~ 62 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G-----------------EDLIYVEGDVTREEDVRRAVARA-Q 62 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S-----------------SSSEEEECCTTCHHHHHHHHHHH-H
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c-----------------cceEEEeCCCCCHHHHHHHHHHH-H
Confidence 689999999999999999999999999999999864 1 14578999999999999999999 7
Q ss_pred ccCCccEEEEccCCCCCCCCCccChh----hHHHHHhhhchHHHHHHHHHhhhhhcCC---C---CeEEEEcCCccccCC
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKD----GYEEHMQVNHLAPALLSILLFPSLIRGS---P---SRIINVNSVMHYVGF 214 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~----~~~~~~~vN~~~~~~l~~~~lp~m~~~~---~---g~Iv~isS~~~~~~~ 214 (298)
+++++|++|||||+....++.+.+.+ +|++.+++|+.++++++++++|.|.+++ . |+||++||..++.+.
T Consensus 63 ~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~ 142 (242)
T 1uay_A 63 EEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ 142 (242)
T ss_dssp HHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC
T ss_pred hhCCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCC
Confidence 88999999999998776666655544 9999999999999999999999998765 3 499999999876554
Q ss_pred CCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHHhhhh-cc
Q 022369 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYHLIPY-FI 292 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~p~-~~ 292 (298)
+....|++||++++.|+++++.|+ .++||+|++|+||+|+|++.+...+. .+......|+ .+
T Consensus 143 ---------------~~~~~Y~~sK~a~~~~~~~l~~e~-~~~gi~v~~v~Pg~v~t~~~~~~~~~~~~~~~~~~~~~~~ 206 (242)
T 1uay_A 143 ---------------IGQAAYAASKGGVVALTLPAAREL-AGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPFPPR 206 (242)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCSSCS
T ss_pred ---------------CCCchhhHHHHHHHHHHHHHHHHH-hhcCcEEEEEEeccCcchhhhccchhHHHHHHhhCCCccc
Confidence 677889999999999999999999 77899999999999999998765443 3334445666 55
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 207 ~~~~~d 212 (242)
T 1uay_A 207 LGRPEE 212 (242)
T ss_dssp CCCHHH
T ss_pred CCCHHH
Confidence 5 5543
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=250.96 Aligned_cols=203 Identities=26% Similarity=0.354 Sum_probs=166.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHH-cCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAE-SGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~-~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.++|++|||||++|||+++|++|++ +|++|++++|+.+++++..+++... +.++.++.+|++|.+++++++++
T Consensus 2 ~~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~------~~~~~~~~~Dl~~~~~~~~~~~~ 75 (276)
T 1wma_A 2 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE------GLSPRFHQLDIDDLQSIRALRDF 75 (276)
T ss_dssp CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT------TCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc------CCeeEEEECCCCCHHHHHHHHHH
Confidence 3579999999999999999999999 9999999999999988888887653 13688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccC-hhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc-c-
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFS-KDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT-E- 218 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~-~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~-~- 218 (298)
+.+++|++|+||||||+..... .+.+ .+++++.+++|+.|+++++++++|.|++ .|+||++||..++.+.... +
T Consensus 76 ~~~~~g~id~li~~Ag~~~~~~-~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~--~g~iv~~sS~~~~~~~~~~~~~ 152 (276)
T 1wma_A 76 LRKEYGGLDVLVNNAGIAFKVA-DPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP--QGRVVNVSSIMSVRALKSCSPE 152 (276)
T ss_dssp HHHHHSSEEEEEECCCCCCCTT-CCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEECCHHHHHHHHTSCHH
T ss_pred HHHhcCCCCEEEECCcccccCC-CccccHHHHHhhhheeeeeHHHHHHHHHHhhCC--CCEEEEECChhhhcccccCChh
Confidence 9999999999999999875433 3334 5889999999999999999999999976 4799999998776431100 0
Q ss_pred -------------ccc------------ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCC----CCcEEEEeeCCcc
Q 022369 219 -------------DMN------------VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAE----SGINVVCVSPGIV 269 (298)
Q Consensus 219 -------------~~~------------~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~----~gI~v~~v~Pg~v 269 (298)
++. ........|. ..|++||++++.|++.++.|+ .+ .||+|++|+||+|
T Consensus 153 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~a~~~~~~~la~~~-~~~~~~~~i~v~~v~PG~v 230 (276)
T 1wma_A 153 LQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPS-SAYGVTKIGVTVLSRIHARKL-SEQRKGDKILLNACCPGWV 230 (276)
T ss_dssp HHHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCS-CHHHHHHHHHHHHHHHHHHHH-HHHCTTSCCEEEEEECCSB
T ss_pred HHhhccccccchhhhhhhhhhhhhhhcccccccCCCcc-chhHHHHHHHHHHHHHHHHHh-hcccCCCceEEEEecCCcc
Confidence 000 0000011233 789999999999999999999 55 6999999999999
Q ss_pred ccCccCC
Q 022369 270 STNVARD 276 (298)
Q Consensus 270 ~T~~~~~ 276 (298)
.|+|.+.
T Consensus 231 ~t~~~~~ 237 (276)
T 1wma_A 231 RTDMAGP 237 (276)
T ss_dssp CSTTTCT
T ss_pred ccCcCCc
Confidence 9999764
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=251.69 Aligned_cols=202 Identities=16% Similarity=0.169 Sum_probs=145.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|++|||||++|||+++|++|+++|++|++++|+.++++. . +++|++|+++++++++++
T Consensus 2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~----------------~---~~~Dl~~~~~v~~~~~~~--- 59 (257)
T 1fjh_A 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA----------------D---LSTAEGRKQAIADVLAKC--- 59 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC----------------C---TTSHHHHHHHHHHHHTTC---
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc----------------c---cccCCCCHHHHHHHHHHh---
Confidence 689999999999999999999999999999998754321 1 578999999998887642
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc---
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV--- 222 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~--- 222 (298)
.+++|+||||||+... .+.|++.+++|+.|+++++++++|.|++++.|+||++||.+++......++...
T Consensus 60 ~~~id~lv~~Ag~~~~-------~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~ 132 (257)
T 1fjh_A 60 SKGMDGLVLCAGLGPQ-------TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALE 132 (257)
T ss_dssp TTCCSEEEECCCCCTT-------CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHH
T ss_pred CCCCCEEEECCCCCCC-------cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhc
Confidence 3899999999998541 134999999999999999999999999888899999999987743111000000
Q ss_pred ----------cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-hHH-HHHHHH--hh
Q 022369 223 ----------VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-PKI-VQAAYH--LI 288 (298)
Q Consensus 223 ----------~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-~~~-~~~~~~--~~ 288 (298)
.....+.++...|++||++++.|+++++.|+ .++||+|++|+||+|+|++.+.. .+. ...... ..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~-~~~gi~v~~v~PG~v~t~~~~~~~~~~~~~~~~~~~~~ 211 (257)
T 1fjh_A 133 AGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAW-GEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFVP 211 (257)
T ss_dssp HTCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHH-HHTTCEEEEEEECC---------------------CCC
T ss_pred ccchhhhhhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHH-hhcCeEEEEEeeCCCCCccchhhccchhHHHHHHhccc
Confidence 0000233567889999999999999999999 77899999999999999998754 221 122222 34
Q ss_pred hhccc-CCCC
Q 022369 289 PYFIF-NPQE 297 (298)
Q Consensus 289 p~~~~-~pe~ 297 (298)
|++++ +|||
T Consensus 212 ~~~~~~~~~d 221 (257)
T 1fjh_A 212 PMGRRAEPSE 221 (257)
T ss_dssp STTSCCCTHH
T ss_pred ccCCCCCHHH
Confidence 66555 6654
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-33 Score=287.88 Aligned_cols=214 Identities=21% Similarity=0.187 Sum_probs=175.9
Q ss_pred CCCCCEEEEeCCCCc-hHHHHHHHHHHcCCEEEEE-EcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSG-IGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~G-IG~~~a~~la~~G~~Vil~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+++||++|||||++| ||+++|++|+++|++|+++ +|+.++++++.+++.+..... +.++.++.+|++|.+++++++
T Consensus 672 ~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~--g~~v~~v~~DVsd~~sV~alv 749 (1887)
T 2uv8_A 672 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAK--GSTLIVVPFNQGSKQDVEALI 749 (1887)
T ss_dssp CCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCT--TCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcC--CCeEEEEEecCCCHHHHHHHH
Confidence 578999999999998 9999999999999999998 688888888888876654322 247999999999999999999
Q ss_pred HHHhcc-----cC-CccEEEEccCCCCCC-CCCccC--hhhHHHHHhhhchHHHHHHHHH--hhhhhcCCCCeEEEEcCC
Q 022369 140 EAWNGR-----LG-PLHVLINNAGIFSIG-EPQKFS--KDGYEEHMQVNHLAPALLSILL--FPSLIRGSPSRIINVNSV 208 (298)
Q Consensus 140 ~~~~~~-----~g-~idilVnnag~~~~~-~~~~~~--~~~~~~~~~vN~~~~~~l~~~~--lp~m~~~~~g~Iv~isS~ 208 (298)
+++.++ +| +||+||||||+...+ ++.+.+ .++|+++|++|+.+++.+++.+ +|.|++++.|+|||+||.
T Consensus 750 ~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ 829 (1887)
T 2uv8_A 750 EFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPN 829 (1887)
T ss_dssp HHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSC
T ss_pred HHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcCh
Confidence 999998 67 999999999998776 788888 8999999999999999999998 899988777999999998
Q ss_pred ccccCCCCcccccccccccCCCCcccchhhHHHHHHH-HHHHHHHcCCCCCcEEEEeeCCccc-cCccCCchHHHHHHHH
Q 022369 209 MHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF-SSILQKRLPAESGINVVCVSPGIVS-TNVARDLPKIVQAAYH 286 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l-~~~l~~e~~~~~gI~v~~v~Pg~v~-T~~~~~~~~~~~~~~~ 286 (298)
++..+ +...|++||+|+.+| ++.++.|+ .++ |+||+|+||+|+ |+|..... .......
T Consensus 830 ag~~g-----------------g~~aYaASKAAL~~Lttr~lA~el-a~~-IrVNaV~PG~V~tT~m~~~~~-~~~~~~~ 889 (1887)
T 2uv8_A 830 HGTFG-----------------GDGMYSESKLSLETLFNRWHSESW-ANQ-LTVCGAIIGWTRGTGLMSANN-IIAEGIE 889 (1887)
T ss_dssp TTCSS-----------------CBTTHHHHHHHGGGHHHHHHHSSC-TTT-EEEEEEEECCEECC-----CC-TTHHHHH
T ss_pred HhccC-----------------CCchHHHHHHHHHHHHHHHHHHHh-CCC-eEEEEEEecccccccccccch-hHHHHHH
Confidence 76543 345799999999999 99999999 666 999999999999 89875421 1122334
Q ss_pred hhhhcccCCCC
Q 022369 287 LIPYFIFNPQE 297 (298)
Q Consensus 287 ~~p~~~~~pe~ 297 (298)
..|++..+|||
T Consensus 890 ~~plr~~sPEE 900 (1887)
T 2uv8_A 890 KMGVRTFSQKE 900 (1887)
T ss_dssp TTSCCCEEHHH
T ss_pred hcCCCCCCHHH
Confidence 45553335543
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-33 Score=263.95 Aligned_cols=186 Identities=17% Similarity=0.165 Sum_probs=162.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCE-EEEE-EcC-------------chHHHHHHHHHHHhhcCCCCCccEEEEEcC
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAH-VVMA-VRN-------------LKAANELIQKWQEEWSGKGLPLNIEAMELD 128 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~-Vil~-~r~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 128 (298)
+++++|||||++|||+++|++|+++|++ |+++ +|+ .++++++.+++.+. +.++.++.||
T Consensus 250 ~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~------g~~v~~~~~D 323 (525)
T 3qp9_A 250 ADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADL------GATATVVTCD 323 (525)
T ss_dssp TTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHH------TCEEEEEECC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhc------CCEEEEEECC
Confidence 5799999999999999999999999996 7788 898 35566777777653 2489999999
Q ss_pred CCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcC
Q 022369 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNS 207 (298)
Q Consensus 129 ~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS 207 (298)
++|.++++++++++. ++|+||+||||||+...+++.+.+.++|++++++|+.|++++++++.+.|++++ .++||++||
T Consensus 324 vtd~~~v~~~~~~i~-~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS 402 (525)
T 3qp9_A 324 LTDAEAAARLLAGVS-DAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSS 402 (525)
T ss_dssp TTSHHHHHHHHHTSC-TTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEE
T ss_pred CCCHHHHHHHHHHHH-hcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECC
Confidence 999999999999998 789999999999999888899999999999999999999999999999998876 799999999
Q ss_pred CccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 208 VMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
.++..+. +++..|+++|+++++| +.++ +..||++++|+||+++|+|..+
T Consensus 403 ~a~~~g~---------------~g~~~YaaaKa~l~~l----A~~~-~~~gi~v~sI~pG~~~tgm~~~ 451 (525)
T 3qp9_A 403 VAAIWGG---------------AGQGAYAAGTAFLDAL----AGQH-RADGPTVTSVAWSPWEGSRVTE 451 (525)
T ss_dssp GGGTTCC---------------TTCHHHHHHHHHHHHH----HTSC-CSSCCEEEEEEECCBTTSGGGS
T ss_pred HHHcCCC---------------CCCHHHHHHHHHHHHH----HHHH-HhCCCCEEEEECCccccccccc
Confidence 9988776 7888899999999877 4567 6789999999999999999853
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-33 Score=283.45 Aligned_cols=216 Identities=20% Similarity=0.176 Sum_probs=178.1
Q ss_pred CCCCCCCEEEEeCCCCc-hHHHHHHHHHHcCCEEEEE-EcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSG-IGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 60 ~~~~~~k~vlITGas~G-IG~~~a~~la~~G~~Vil~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
..+++||++|||||++| ||+++|++|+++|++|+++ +|+.+++++..+++.+.... .+.++.++++|++|++++++
T Consensus 471 ~msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a--~Ga~V~vV~~DVTD~esVea 548 (1688)
T 2pff_A 471 XVTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGA--KGSTLIVVPFNQGSKQDVEA 548 (1688)
T ss_dssp CCCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCC--TTCEEEEEECCSSSTTHHHH
T ss_pred ccccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhc--CCCeEEEEEeCCCCHHHHHH
Confidence 34678999999999998 9999999999999999998 67777777777666443322 13578999999999999999
Q ss_pred HHHHHhcc-----cC-CccEEEEccCCCCCC-CCCccC--hhhHHHHHhhhchHHHHHHHHH--hhhhhcCCCCeEEEEc
Q 022369 138 FSEAWNGR-----LG-PLHVLINNAGIFSIG-EPQKFS--KDGYEEHMQVNHLAPALLSILL--FPSLIRGSPSRIINVN 206 (298)
Q Consensus 138 ~~~~~~~~-----~g-~idilVnnag~~~~~-~~~~~~--~~~~~~~~~vN~~~~~~l~~~~--lp~m~~~~~g~Iv~is 206 (298)
+++++.+. +| +||+||||||+.... ++.+.+ .++|++++++|+.+++.+++.+ +|.|++++.|+|||+|
T Consensus 549 LVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnIS 628 (1688)
T 2pff_A 549 LIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMS 628 (1688)
T ss_dssp HHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCC
T ss_pred HHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEE
Confidence 99999998 77 999999999998776 788888 8999999999999999999999 8999888779999999
Q ss_pred CCccccCCCCcccccccccccCCCCcccchhhHHHHHHH-HHHHHHHcCCCCCcEEEEeeCCccc-cCccCCchHHHHHH
Q 022369 207 SVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF-SSILQKRLPAESGINVVCVSPGIVS-TNVARDLPKIVQAA 284 (298)
Q Consensus 207 S~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l-~~~l~~e~~~~~gI~v~~v~Pg~v~-T~~~~~~~~~~~~~ 284 (298)
|.++..+ +...|++||+|+.+| ++.++.|+ .+. |+||+|+||+|+ |+|.... +.....
T Consensus 629 SiAG~~G-----------------g~saYaASKAAL~aLttrsLAeEl-a~~-IRVNaVaPG~V~TT~M~~~~-e~~~~~ 688 (1688)
T 2pff_A 629 PNHGTFG-----------------GDGMYSESKLSLETLFNRWHSESW-ANQ-LTVCGAIIGWTRGTGLMSAN-NIIAEG 688 (1688)
T ss_dssp SCTTTSS-----------------CBTTHHHHHHHHTHHHHHTTTSSC-TTT-EECCCCCCCCCCCCSSSCTT-TTCSTT
T ss_pred ChHhccC-----------------CchHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEEEEECcCcCCcccCCc-hHHHHH
Confidence 9876543 345799999999999 78888888 655 999999999999 7886541 111112
Q ss_pred HHhhhhcccCCCC
Q 022369 285 YHLIPYFIFNPQE 297 (298)
Q Consensus 285 ~~~~p~~~~~pe~ 297 (298)
....|++..+|||
T Consensus 689 l~~iplR~~sPEE 701 (1688)
T 2pff_A 689 IEKMGVRTFSQKE 701 (1688)
T ss_dssp TSSSSCCCCCCCT
T ss_pred HHhCCCCCCCHHH
Confidence 2345554457776
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-32 Score=280.97 Aligned_cols=214 Identities=18% Similarity=0.145 Sum_probs=177.6
Q ss_pred CCCCCEEEEeCCCCc-hHHHHHHHHHHcCCEEEEEE-cCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSG-IGREIARQLAESGAHVVMAV-RNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~G-IG~~~a~~la~~G~~Vil~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+++||++|||||++| ||+++|++|+++|++|++++ |+.+++++..+++.+..... +.++.++.||++|.+++++++
T Consensus 649 ~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~--G~~v~~v~~DVsd~esV~alv 726 (1878)
T 2uv9_A 649 TFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGAR--GSQLVVVPFNQGSKQDVEALV 726 (1878)
T ss_dssp CCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCT--TCEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhcc--CCeEEEEEcCCCCHHHHHHHH
Confidence 477999999999999 99999999999999999995 77788888777776554322 357999999999999999999
Q ss_pred HHHhcc---cC-CccEEEEccCCCCCC-CCCccC--hhhHHHHHhhhchHHHHHHHH--HhhhhhcCCCCeEEEEcCCcc
Q 022369 140 EAWNGR---LG-PLHVLINNAGIFSIG-EPQKFS--KDGYEEHMQVNHLAPALLSIL--LFPSLIRGSPSRIINVNSVMH 210 (298)
Q Consensus 140 ~~~~~~---~g-~idilVnnag~~~~~-~~~~~~--~~~~~~~~~vN~~~~~~l~~~--~lp~m~~~~~g~Iv~isS~~~ 210 (298)
+++.+. +| +||+||||||+...+ ++.+.+ .++|++++++|+.|++.+++. ++|.|.+++.|+|||+||.++
T Consensus 727 ~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag 806 (1878)
T 2uv9_A 727 NYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHG 806 (1878)
T ss_dssp HHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSS
T ss_pred HHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhh
Confidence 999998 99 999999999998776 788888 899999999999999999987 789998877799999999986
Q ss_pred ccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHH-HcCCCCCcEEEEeeCCccc-cCccCCchHHHHHHHHhh
Q 022369 211 YVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQK-RLPAESGINVVCVSPGIVS-TNVARDLPKIVQAAYHLI 288 (298)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~-e~~~~~gI~v~~v~Pg~v~-T~~~~~~~~~~~~~~~~~ 288 (298)
..+ +...|++||+|+.+|++.++. |+ .++ |+||+|+||+|+ |+|.... +.........
T Consensus 807 ~~g-----------------g~~aYaASKAAL~aLt~~laAeEl-a~~-IrVNaVaPG~V~gT~m~~~~-~~~~~~~~~~ 866 (1878)
T 2uv9_A 807 TFG-----------------NDGLYSESKLALETLFNRWYSESW-GNY-LTICGAVIGWTRGTGLMSAN-NLVAEGVEKL 866 (1878)
T ss_dssp SSS-----------------CCSSHHHHHHHHTTHHHHHHHSTT-TTT-EEEEEEEECCBCCTTSCSHH-HHTHHHHHTT
T ss_pred ccC-----------------CchHHHHHHHHHHHHHHHHHHHHc-CCC-eEEEEEEecceecCcccccc-hhhHHHHHhc
Confidence 654 245799999999999987655 57 555 999999999999 9997642 2222333455
Q ss_pred hhcccCCCC
Q 022369 289 PYFIFNPQE 297 (298)
Q Consensus 289 p~~~~~pe~ 297 (298)
|++..+|||
T Consensus 867 plr~~sPeE 875 (1878)
T 2uv9_A 867 GVRTFSQQE 875 (1878)
T ss_dssp TCCCBCHHH
T ss_pred CCCCCCHHH
Confidence 654446654
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-31 Score=224.16 Aligned_cols=173 Identities=23% Similarity=0.293 Sum_probs=150.5
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|++|||||++|||+++|++|+++ +|++++|+.++++++.+++. . .++.+|++|++++++++++
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~----------~-~~~~~D~~~~~~~~~~~~~---- 63 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVG----------A-RALPADLADELEAKALLEE---- 63 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHT----------C-EECCCCTTSHHHHHHHHHH----
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhcc----------C-cEEEeeCCCHHHHHHHHHh----
Confidence 57999999999999999999998 99999999888777655541 1 7889999999999999887
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
+|++|++|||||+....++.+.+.++|++.+++|+.+++++++++ ++++.++||++||..++.+.
T Consensus 64 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~iv~~sS~~~~~~~----------- 128 (207)
T 2yut_A 64 AGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHA----RFQKGARAVFFGAYPRYVQV----------- 128 (207)
T ss_dssp HCSEEEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHC----CEEEEEEEEEECCCHHHHSS-----------
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH----HhcCCcEEEEEcChhhccCC-----------
Confidence 689999999999987777888899999999999999999999988 34456899999999866554
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
++...|+++|++++.|+++++.|+ .++||++++++||++.|++..
T Consensus 129 ----~~~~~Y~~sK~a~~~~~~~~~~~~-~~~gi~v~~v~pg~v~t~~~~ 173 (207)
T 2yut_A 129 ----PGFAAYAAAKGALEAYLEAARKEL-LREGVHLVLVRLPAVATGLWA 173 (207)
T ss_dssp ----TTBHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEECCCCBCSGGGG
T ss_pred ----CCcchHHHHHHHHHHHHHHHHHHH-hhhCCEEEEEecCcccCCCcc
Confidence 677889999999999999999999 788999999999999999843
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=219.01 Aligned_cols=163 Identities=15% Similarity=0.217 Sum_probs=146.5
Q ss_pred CC-EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DL-TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k-~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+| ++|||||++|||++++++|+ +|++|++++|+.+ .+.+|++|+++++++++++
T Consensus 2 ~kM~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~-----------------------~~~~D~~~~~~~~~~~~~~- 56 (202)
T 3d7l_A 2 NAMKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG-----------------------DVTVDITNIDSIKKMYEQV- 56 (202)
T ss_dssp CSCEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS-----------------------SEECCTTCHHHHHHHHHHH-
T ss_pred CCcEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc-----------------------ceeeecCCHHHHHHHHHHh-
Confidence 44 79999999999999999999 9999999999853 3689999999999998875
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
|++|++|||||.....++.+.+.++|++.+++|+.+++++++++.|.|.+ +++||++||..+..+.
T Consensus 57 ---~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~--~~~iv~~sS~~~~~~~--------- 122 (202)
T 3d7l_A 57 ---GKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLND--KGSFTLTTGIMMEDPI--------- 122 (202)
T ss_dssp ---CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEE--EEEEEEECCGGGTSCC---------
T ss_pred ---CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhcc--CCEEEEEcchhhcCCC---------
Confidence 78999999999877777888899999999999999999999999999965 3899999998765443
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
+....|+++|++++.++++++.|+ ++||++++|+||++.|++.
T Consensus 123 ------~~~~~Y~~sK~~~~~~~~~~~~e~--~~gi~v~~v~pg~v~~~~~ 165 (202)
T 3d7l_A 123 ------VQGASAAMANGAVTAFAKSAAIEM--PRGIRINTVSPNVLEESWD 165 (202)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHTTSC--STTCEEEEEEECCBGGGHH
T ss_pred ------CccHHHHHHHHHHHHHHHHHHHHc--cCCeEEEEEecCccCCchh
Confidence 677889999999999999999998 4699999999999999974
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=263.16 Aligned_cols=179 Identities=19% Similarity=0.293 Sum_probs=160.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHH-HcCC-EEEEEEcC---chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLA-ESGA-HVVMAVRN---LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la-~~G~-~Vil~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
.+|++|||||++|||+++|++|+ ++|+ +|++++|+ .++++++.+++++. +.++.++.||++|+++++++
T Consensus 529 ~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~------G~~v~~~~~Dvsd~~~v~~~ 602 (795)
T 3slk_A 529 AAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAY------GAEVSLQACDVADRETLAKV 602 (795)
T ss_dssp TTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHH
T ss_pred cccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhc------CCcEEEEEeecCCHHHHHHH
Confidence 57999999999999999999999 7999 69999999 55677777777653 35899999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++++.+.+ +||+||||||+....++.+++.++|++.+++|+.|++++++++.|.| +|||+||.++..+.
T Consensus 603 ~~~~~~~~-~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~l------~iV~~SS~ag~~g~---- 671 (795)
T 3slk_A 603 LASIPDEH-PLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPDV------ALVLFSSVSGVLGS---- 671 (795)
T ss_dssp HHTSCTTS-CEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTTS------EEEEEEETHHHHTC----
T ss_pred HHHHHHhC-CCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhCC------EEEEEccHHhcCCC----
Confidence 99998876 99999999999988899999999999999999999999999998887 89999999988776
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+++..|+++|+ |+++|+.|+ +.+||++|+|+||++.|+++.
T Consensus 672 -----------~g~~~YaAaka----~~~alA~~~-~~~Gi~v~sI~pG~v~t~g~~ 712 (795)
T 3slk_A 672 -----------GGQGNYAAANS----FLDALAQQR-QSRGLPTRSLAWGPWAEHGMA 712 (795)
T ss_dssp -----------SSCHHHHHHHH----HHHHHHHHH-HHTTCCEEEEEECCCSCCCHH
T ss_pred -----------CCCHHHHHHHH----HHHHHHHHH-HHcCCeEEEEECCeECcchhh
Confidence 88899999995 666677777 667999999999999988643
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-30 Score=241.40 Aligned_cols=181 Identities=20% Similarity=0.216 Sum_probs=156.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc---hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL---KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++++|||||++|||+++|++|+++|+ +|++++|+. +..+++.+++.+. +.++.++.||++|++++++++
T Consensus 238 ~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~------g~~v~~~~~Dvtd~~~v~~~~ 311 (496)
T 3mje_A 238 VHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQL------GVRVTIAACDAADREALAALL 311 (496)
T ss_dssp CCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhc------CCeEEEEEccCCCHHHHHHHH
Confidence 359999999999999999999999999 899999974 4466666666552 358999999999999999999
Q ss_pred HHHhcccCCccEEEEccCCC-CCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIF-SIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~-~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+. ++||+||||||+. ...++.+.+.++|++++++|+.|++++.+.+.+. ..++||++||.++..+.
T Consensus 312 ~~i~~~-g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~----~~~~iV~~SS~a~~~g~---- 382 (496)
T 3mje_A 312 AELPED-APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADL----DLDAFVLFSSGAAVWGS---- 382 (496)
T ss_dssp HTCCTT-SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTS----CCSEEEEEEEHHHHTTC----
T ss_pred HHHHHh-CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhcc----CCCEEEEEeChHhcCCC----
Confidence 998877 7999999999998 6778899999999999999999999999987765 45799999999888776
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+++..|+++|+++++|++.+ +..||++++|+||++.|+.+.
T Consensus 383 -----------~g~~~YaAaKa~ldala~~~-----~~~Gi~v~sV~pG~w~~~gm~ 423 (496)
T 3mje_A 383 -----------GGQPGYAAANAYLDALAEHR-----RSLGLTASSVAWGTWGEVGMA 423 (496)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHH-----HHTTCCCEEEEECEESSSCC-
T ss_pred -----------CCcHHHHHHHHHHHHHHHHH-----HhcCCeEEEEECCcccCCccc
Confidence 78889999999999888754 345899999999999776543
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=266.01 Aligned_cols=214 Identities=15% Similarity=0.135 Sum_probs=160.3
Q ss_pred CCCCCEEEEeCCCCc-hHHHHHHHHHHcCCEEEEEEcCchH-HHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSG-IGREIARQLAESGAHVVMAVRNLKA-ANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~G-IG~~~a~~la~~G~~Vil~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++||++|||||++| ||+++|+.|++.|++|++++|+.++ ..+..+++.+.... .+.++..+++|++|++++++++
T Consensus 2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~--~G~~~~~v~~Dvtd~~~v~~lv 2210 (3089)
T 3zen_D 2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHAR--FDATLWVVPANMASYSDIDKLV 2210 (3089)
T ss_dssp CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCC--TTCEEEEEECCTTCHHHHHHHH
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhh--cCCeEEEEEecCCCHHHHHHHH
Confidence 378999999999999 9999999999999999999999776 22223333333322 2357899999999999999999
Q ss_pred HHHhc----ccCCccEEEEccCC----CC-CCCCCccChhhHHHH----HhhhchHHHHHHHHHhhhhhcCCCC----eE
Q 022369 140 EAWNG----RLGPLHVLINNAGI----FS-IGEPQKFSKDGYEEH----MQVNHLAPALLSILLFPSLIRGSPS----RI 202 (298)
Q Consensus 140 ~~~~~----~~g~idilVnnag~----~~-~~~~~~~~~~~~~~~----~~vN~~~~~~l~~~~lp~m~~~~~g----~I 202 (298)
+++.+ .+|+||+||||||+ .. .....+.+.++|++. +++|+.+++.+++.+.|.|.+++.+ .|
T Consensus 2211 ~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii 2290 (3089)
T 3zen_D 2211 EWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVV 2290 (3089)
T ss_dssp HHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred HHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEE
Confidence 99998 89999999999998 21 123344455556555 9999999999999999999886543 23
Q ss_pred EEEcCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHH--cCCCCCcEEEEeeCCccc-cCccCCchH
Q 022369 203 INVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKR--LPAESGINVVCVSPGIVS-TNVARDLPK 279 (298)
Q Consensus 203 v~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e--~~~~~gI~v~~v~Pg~v~-T~~~~~~~~ 279 (298)
+++|+..+.. ++...|++||+|+.+|+++|+.| + . .+|+||+|+||+|+ |++......
T Consensus 2291 ~~~ss~~g~~-----------------g~~~aYsASKaAl~~LtrslA~E~~~-a-~~IrVn~v~PG~v~tT~l~~~~~~ 2351 (3089)
T 3zen_D 2291 LPGSPNRGMF-----------------GGDGAYGEAKSALDALENRWSAEKSW-A-ERVSLAHALIGWTKGTGLMGQNDA 2351 (3089)
T ss_dssp EEECSSTTSC-----------------SSCSSHHHHGGGHHHHHHHHHHCSTT-T-TTEEEEEEECCCEECSTTTTTTTT
T ss_pred EECCcccccC-----------------CCchHHHHHHHHHHHHHHHHHhcccc-C-CCeEEEEEeecccCCCcccccchh
Confidence 3334332211 34457999999999999999999 6 4 46999999999999 777654322
Q ss_pred HHHHHHHhhhhcccCCCC
Q 022369 280 IVQAAYHLIPYFIFNPQE 297 (298)
Q Consensus 280 ~~~~~~~~~p~~~~~pe~ 297 (298)
........+.++++|||
T Consensus 2352 -~~~~~~~~~~r~~~PeE 2368 (3089)
T 3zen_D 2352 -IVSAVEEAGVTTYTTDE 2368 (3089)
T ss_dssp -THHHHGGGSCBCEEHHH
T ss_pred -HHHHHHhcCCCCCCHHH
Confidence 22233445555555553
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-29 Score=217.37 Aligned_cols=181 Identities=22% Similarity=0.184 Sum_probs=144.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|++|||||++|||+++|++|+++|++|++++|+.++++. .+.+|++++++++++++++
T Consensus 2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------------------~~~~D~~~~~~~~~~~~~~--- 59 (255)
T 2dkn_A 2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA-------------------DLSTPGGRETAVAAVLDRC--- 59 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------------------CTTSHHHHHHHHHHHHHHH---
T ss_pred cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc-------------------cccCCcccHHHHHHHHHHc---
Confidence 689999999999999999999999999999998654211 1578999999999988865
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc----
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN---- 221 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~---- 221 (298)
.+++|+||||||+... .+.+++.+++|+.+++++++++++.|++++.++||++||..++.+........
T Consensus 60 ~~~~d~vi~~Ag~~~~-------~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~ 132 (255)
T 2dkn_A 60 GGVLDGLVCCAGVGVT-------AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAML 132 (255)
T ss_dssp TTCCSEEEECCCCCTT-------SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHH
T ss_pred CCCccEEEECCCCCCc-------chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhc
Confidence 3689999999997541 24589999999999999999999999988789999999998765431100000
Q ss_pred cccc-------ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 222 VVSG-------RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 222 ~~~~-------~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
.... ....++...|++||++++.+++.++.|+ .+.||++++++||.+.|++.+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~-~~~gi~v~~v~pg~v~~~~~~~ 193 (255)
T 2dkn_A 133 AGDEARAIELAEQQGQTHLAYAGSKYAVTCLARRNVVDW-AGRGVRLNVVAPGAVETPLLQA 193 (255)
T ss_dssp HTCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHH-HHTTCEEEEEEECCBCSHHHHH
T ss_pred ccchhhhhhhccccCCcchhHHHHHHHHHHHHHHHHHHH-hhcCcEEEEEcCCcccchhhhh
Confidence 0000 0001356789999999999999999998 7789999999999999998653
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-27 Score=221.52 Aligned_cols=180 Identities=21% Similarity=0.254 Sum_probs=154.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCch---HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLK---AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++++|||||++|||+++|++|+++|+ +|++++|+.. .++++.+++... +.++.++.||++|.+++++++
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~------g~~v~~~~~Dvtd~~~v~~~~ 331 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGH------GCEVVHAACDVAERDALAALV 331 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTT------TCEEEEEECCSSCHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhc------CCEEEEEEeCCCCHHHHHHHH
Confidence 579999999999999999999999999 7999999874 455666665432 357999999999999999998
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++ +++|+||||||+.....+.+.+.+++++++++|+.|++++.+.+.+. .+.++||++||.++..+.
T Consensus 332 ~~-----~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~---~~~~~~V~~SS~a~~~g~----- 398 (511)
T 2z5l_A 332 TA-----YPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADI---KGLDAFVLFSSVTGTWGN----- 398 (511)
T ss_dssp HH-----SCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSC---TTCCCEEEEEEGGGTTCC-----
T ss_pred hc-----CCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhc---cCCCEEEEEeCHHhcCCC-----
Confidence 87 68999999999988778889999999999999999999999876542 145799999999877765
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcc-ccCccCCc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIV-STNVARDL 277 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v-~T~~~~~~ 277 (298)
+++..|+++|++++.|++.+ ...|+++++|+||++ +|+|....
T Consensus 399 ----------~g~~~YaaaKa~ld~la~~~-----~~~gi~v~sv~pG~~~~tgm~~~~ 442 (511)
T 2z5l_A 399 ----------AGQGAYAAANAALDALAERR-----RAAGLPATSVAWGLWGGGGMAAGA 442 (511)
T ss_dssp ----------TTBHHHHHHHHHHHHHHHHH-----HTTTCCCEEEEECCBCSTTCCCCH
T ss_pred ----------CCCHHHHHHHHHHHHHHHHH-----HHcCCcEEEEECCcccCCcccccc
Confidence 67788999999999998865 345899999999999 88887653
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-27 Score=221.50 Aligned_cols=178 Identities=22% Similarity=0.252 Sum_probs=152.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCch---HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLK---AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++++|||||++|||+++|++|+++|+ +|++++|+.. .++++.+++... +.++.++.||++|++++.+++
T Consensus 225 ~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~------g~~v~~~~~Dv~d~~~v~~~~ 298 (486)
T 2fr1_A 225 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEAL------GARTTVAACDVTDRESVRELL 298 (486)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhc------CCEEEEEEeCCCCHHHHHHHH
Confidence 579999999999999999999999999 5999999875 456666666542 247999999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++ ..++++|++|||||+...+++.+.+.+++++++++|+.|++++.+++.+ .+.++||++||.++..+.
T Consensus 299 ~~i-~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~----~~~~~~V~~SS~a~~~g~----- 368 (486)
T 2fr1_A 299 GGI-GDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRE----LDLTAFVLFSSFASAFGA----- 368 (486)
T ss_dssp HTS-CTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTT----SCCSEEEEEEEHHHHTCC-----
T ss_pred HHH-HhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCc----CCCCEEEEEcChHhcCCC-----
Confidence 998 5668999999999998878888999999999999999999999998754 356899999999877765
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
+++..|+++|++++.|++.++ ..|+++++|+||++.++
T Consensus 369 ----------~g~~~Yaaaka~l~~la~~~~-----~~gi~v~~i~pG~~~~~ 406 (486)
T 2fr1_A 369 ----------PGLGGYAPGNAYLDGLAQQRR-----SDGLPATAVAWGTWAGS 406 (486)
T ss_dssp ----------TTCTTTHHHHHHHHHHHHHHH-----HTTCCCEEEEECCBC--
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHH-----hcCCeEEEEECCeeCCC
Confidence 677889999999998876543 35899999999999886
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=199.39 Aligned_cols=172 Identities=16% Similarity=0.099 Sum_probs=140.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++|++|||||++|||++++++|+++|++|++++|++.+.+ +..+.++.+|++|+++++++++
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~---------------~~~~~~~~~Dl~d~~~~~~~~~--- 63 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA---------------GPNEECVQCDLADANAVNAMVA--- 63 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC---------------CTTEEEEECCTTCHHHHHHHHT---
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc---------------CCCCEEEEcCCCCHHHHHHHHc---
Confidence 4689999999999999999999999999999999975432 1378999999999999988876
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
++|+||||||+. +.+.|++.+++|+.|++++++++. +++.++|||+||..++..... ...+
T Consensus 64 ----~~D~vi~~Ag~~--------~~~~~~~~~~~N~~g~~~l~~a~~----~~~~~~iv~~SS~~~~g~~~~---~~~~ 124 (267)
T 3rft_A 64 ----GCDGIVHLGGIS--------VEKPFEQILQGNIIGLYNLYEAAR----AHGQPRIVFASSNHTIGYYPQ---TERL 124 (267)
T ss_dssp ----TCSEEEECCSCC--------SCCCHHHHHHHHTHHHHHHHHHHH----HTTCCEEEEEEEGGGGTTSBT---TSCB
T ss_pred ----CCCEEEECCCCc--------CcCCHHHHHHHHHHHHHHHHHHHH----HcCCCEEEEEcchHHhCCCCC---CCCC
Confidence 689999999983 335689999999999999999984 345689999999877643221 1122
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
....+.++...|++||++.+.+++.++.++ |+++++|.||.|.+++...
T Consensus 125 ~e~~~~~~~~~Y~~sK~~~e~~~~~~a~~~----g~~~~~vr~~~v~~~~~~~ 173 (267)
T 3rft_A 125 GPDVPARPDGLYGVSKCFGENLARMYFDKF----GQETALVRIGSCTPEPNNY 173 (267)
T ss_dssp CTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECBCSSSCCST
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCeEEEEEeecccCCCCCC
Confidence 334455677889999999999999999887 6888888888888876543
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-24 Score=181.98 Aligned_cols=166 Identities=17% Similarity=0.175 Sum_probs=128.1
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccE-EEEEcCCCCHHHH
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI-EAMELDLLSLDSV 135 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~v 135 (298)
+.+..+++|+++|||||+++||++++++|+++|++|++++|+.++++++.+. .+ .++.+|++
T Consensus 13 ~~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~------------~~~~~~~~Dl~----- 75 (236)
T 3e8x_A 13 GRENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER------------GASDIVVANLE----- 75 (236)
T ss_dssp --------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT------------TCSEEEECCTT-----
T ss_pred cccccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC------------CCceEEEcccH-----
Confidence 3445678999999999999999999999999999999999999887665321 57 88999999
Q ss_pred HHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 136 VRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 136 ~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+.+.+.++++|+||||||... .+++++.+++|+.+++++++++. +.+.++||++||..+..+.
T Consensus 76 ----~~~~~~~~~~D~vi~~ag~~~--------~~~~~~~~~~n~~~~~~l~~a~~----~~~~~~iv~~SS~~~~~~~- 138 (236)
T 3e8x_A 76 ----EDFSHAFASIDAVVFAAGSGP--------HTGADKTILIDLWGAIKTIQEAE----KRGIKRFIMVSSVGTVDPD- 138 (236)
T ss_dssp ----SCCGGGGTTCSEEEECCCCCT--------TSCHHHHHHTTTHHHHHHHHHHH----HHTCCEEEEECCTTCSCGG-
T ss_pred ----HHHHHHHcCCCEEEECCCCCC--------CCCccccchhhHHHHHHHHHHHH----HcCCCEEEEEecCCCCCCC-
Confidence 344455678999999999753 25688999999999999999873 3456799999996544321
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
..+ +....|+++|++++.+.+ + .||++++++||.+.|+...
T Consensus 139 ----------~~~-~~~~~Y~~sK~~~e~~~~----~----~gi~~~~lrpg~v~~~~~~ 179 (236)
T 3e8x_A 139 ----------QGP-MNMRHYLVAKRLADDELK----R----SSLDYTIVRPGPLSNEEST 179 (236)
T ss_dssp ----------GSC-GGGHHHHHHHHHHHHHHH----H----SSSEEEEEEECSEECSCCC
T ss_pred ----------CCh-hhhhhHHHHHHHHHHHHH----H----CCCCEEEEeCCcccCCCCC
Confidence 001 356789999999988765 2 4899999999999998753
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-24 Score=233.75 Aligned_cols=177 Identities=16% Similarity=0.188 Sum_probs=135.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCE-EEEEEcCchHHH---HHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAH-VVMAVRNLKAAN---ELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~-Vil~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.+|++|||||++|||+++|++|+++|++ |++++|+..+.+ +..+++.+. +.++.++.||++|.+++++++
T Consensus 1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~------g~~v~~~~~Dvsd~~~v~~~~ 1956 (2512)
T 2vz8_A 1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQ------GVQVLVSTSNASSLDGARSLI 1956 (2512)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHT------TCEEEEECCCSSSHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhC------CCEEEEEecCCCCHHHHHHHH
Confidence 5899999999999999999999999996 888999865543 334444331 247899999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+ +|+||+||||||+....++.+++.++|++.+++|+.|++++.+++.+.|.+. |+|||+||.++..+.
T Consensus 1957 ~~~~~-~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~--g~iV~iSS~ag~~g~----- 2028 (2512)
T 2vz8_A 1957 TEATQ-LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPEL--DYFVIFSSVSCGRGN----- 2028 (2512)
T ss_dssp HHHHH-HSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTC--CEEEEECCHHHHTTC-----
T ss_pred HHHHh-cCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccC--CEEEEecchhhcCCC-----
Confidence 99874 7999999999999887889999999999999999999999999999988653 799999999887776
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIV 269 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v 269 (298)
+++..|+++|+++.+|++.++.+ |+...++..|.+
T Consensus 2029 ----------~g~~~Y~aaKaal~~l~~~rr~~-----Gl~~~a~~~g~~ 2063 (2512)
T 2vz8_A 2029 ----------AGQANYGFANSAMERICEKRRHD-----GLPGLAVQWGAI 2063 (2512)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHT-----TSCCCEEEECCB
T ss_pred ----------CCcHHHHHHHHHHHHHHHHHHHC-----CCcEEEEEccCc
Confidence 77889999999999999976554 455555555543
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-23 Score=185.52 Aligned_cols=180 Identities=15% Similarity=0.186 Sum_probs=146.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHc-CC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAES-GA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~-G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.+++|++|||||+|+||.+++++|+++ |+ +|++++|++++.+.+.+++.. ..+.++.+|++|.+++.+++
T Consensus 18 ~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~--------~~v~~~~~Dl~d~~~l~~~~ 89 (344)
T 2gn4_A 18 MLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFND--------PRMRFFIGDVRDLERLNYAL 89 (344)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCC--------TTEEEEECCTTCHHHHHHHT
T ss_pred hhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcC--------CCEEEEECCCCCHHHHHHHH
Confidence 467899999999999999999999999 98 999999998887776555421 36899999999999887765
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+ ++|++|||||.... .....+.++.+++|+.|+.++++++.+. +.++||++||..+.
T Consensus 90 ~-------~~D~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~gt~~l~~aa~~~----~v~~~V~~SS~~~~-------- 146 (344)
T 2gn4_A 90 E-------GVDICIHAAALKHV----PIAEYNPLECIKTNIMGASNVINACLKN----AISQVIALSTDKAA-------- 146 (344)
T ss_dssp T-------TCSEEEECCCCCCH----HHHHHSHHHHHHHHHHHHHHHHHHHHHT----TCSEEEEECCGGGS--------
T ss_pred h-------cCCEEEECCCCCCC----CchhcCHHHHHHHHHHHHHHHHHHHHhC----CCCEEEEecCCccC--------
Confidence 4 68999999997531 1123456789999999999999998875 35699999996532
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHH
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQA 283 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~ 283 (298)
.+...|++||++.+.++++++.++ .+.|++++++.||.|.++...-++...+.
T Consensus 147 ----------~p~~~Y~~sK~~~E~~~~~~~~~~-~~~g~~~~~vRpg~v~g~~~~~i~~~~~~ 199 (344)
T 2gn4_A 147 ----------NPINLYGATKLCSDKLFVSANNFK-GSSQTQFSVVRYGNVVGSRGSVVPFFKKL 199 (344)
T ss_dssp ----------SCCSHHHHHHHHHHHHHHHGGGCC-CSSCCEEEEECCCEETTCTTSHHHHHHHH
T ss_pred ----------CCccHHHHHHHHHHHHHHHHHHHh-CCCCcEEEEEEeccEECCCCCHHHHHHHH
Confidence 224679999999999999999988 77899999999999999875434443333
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-22 Score=182.17 Aligned_cols=191 Identities=10% Similarity=-0.040 Sum_probs=150.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHH-HcCCEEEEEEcCchH------------HHHHHHHHHHhhcCCCCCccEEEEEcC
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLA-ESGAHVVMAVRNLKA------------ANELIQKWQEEWSGKGLPLNIEAMELD 128 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la-~~G~~Vil~~r~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D 128 (298)
...+|+|||||||+|||++.|..|| +.|++++++.+..+. ...+.+.+++. |.+...+.||
T Consensus 47 ~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~------G~~a~~i~~D 120 (401)
T 4ggo_A 47 AKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKRE------GLYSVTIDGD 120 (401)
T ss_dssp SCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHH------TCCEEEEESC
T ss_pred cCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHc------CCCceeEeCC
Confidence 4557999999999999999999999 689999999876432 33445555553 2479999999
Q ss_pred CCCHHHHHHHHHHHhcccCCccEEEEccCCCCCC-------------CC---------------------CccChhh---
Q 022369 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIG-------------EP---------------------QKFSKDG--- 171 (298)
Q Consensus 129 ~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~-------------~~---------------------~~~~~~~--- 171 (298)
+++.++++++++++++++|+||+||||++..... |+ ...+.++
T Consensus 121 v~d~e~i~~vi~~i~~~~G~IDiLVhS~A~~~r~~p~~g~~~~S~LKpi~~~~~~~~ldt~~~~i~~~~l~pat~eeie~ 200 (401)
T 4ggo_A 121 AFSDEIKAQVIEEAKKKGIKFDLIVYSLASPVRTDPDTGIMHKSVLKPFGKTFTGKTVDPFTGELKEISAEPANDEEAAA 200 (401)
T ss_dssp TTSHHHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEECTTTCCEEEEEECCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEecccccccCCCCCceeeeeecccccccccccccccccccccccccCCcHHHHHH
Confidence 9999999999999999999999999999976311 11 1123344
Q ss_pred HHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccccCCCC--cccchhhHHHHHHHHHHH
Q 022369 172 YEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTS--LMGYSGSKLAQIKFSSIL 249 (298)
Q Consensus 172 ~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~asKaa~~~l~~~l 249 (298)
+.+.|....++.+...+...+.|.+ ++++|.+|+..+.... |. ...++++|++++..++.|
T Consensus 201 T~~vMg~s~~s~w~~al~~a~lla~--G~siva~SYiGse~t~---------------P~Y~~G~mG~AKaaLEa~~r~L 263 (401)
T 4ggo_A 201 TVKVMGGEDWERWIKQLSKEGLLEE--GCITLAYSYIGPEATQ---------------ALYRKGTIGKAKEHLEATAHRL 263 (401)
T ss_dssp HHHHHSSHHHHHHHHHHHHTTCEEE--EEEEEEEECCCCGGGH---------------HHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHhhhcccC--CceEEEEeccCcceee---------------cCCCccHHHHHHHHHHHHHHHH
Confidence 4455666777778888888887765 5899999997643332 43 357899999999999999
Q ss_pred HHHcCCCCCcEEEEeeCCccccCccCCch
Q 022369 250 QKRLPAESGINVVCVSPGIVSTNVARDLP 278 (298)
Q Consensus 250 ~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~ 278 (298)
+.|+ . ++++++++||.+.|.....+|
T Consensus 264 a~eL-~--~~~a~v~v~~a~vT~AssaIP 289 (401)
T 4ggo_A 264 NKEN-P--SIRAFVSVNKGLVTRASAVIP 289 (401)
T ss_dssp HHHC-T--TEEEEEEECCCCCCTTGGGSS
T ss_pred HHhc-C--CCcEEEEEcCccccchhhcCC
Confidence 9999 5 589999999999999988775
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-22 Score=179.63 Aligned_cols=185 Identities=18% Similarity=0.094 Sum_probs=145.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.++++|||||+++||.+++++|+++|++|++++|+.++..+..+++..... ..+.++.+|++|++++++++++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~d~~~~~~~~~~-- 76 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITG-----KTPAFHETDVSDERALARIFDA-- 76 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHS-----CCCEEECCCTTCHHHHHHHHHH--
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcC-----CCceEEEeecCCHHHHHHHHhc--
Confidence 457999999999999999999999999999999988777766666655322 3688999999999999998886
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+++|++|||||..... ...+..++.+++|+.++.+++++ +++.+.++||++||.+.+..... ...
T Consensus 77 ---~~~d~vih~A~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~----~~~~~~~~iv~~SS~~~~g~~~~----~~~ 141 (341)
T 3enk_A 77 ---HPITAAIHFAALKAVG----ESVAKPIEYYRNNLDSLLSLLRV----MRERAVKRIVFSSSATVYGVPER----SPI 141 (341)
T ss_dssp ---SCCCEEEECCCCCCHH----HHHHCHHHHHHHHHHHHHHHHHH----HHHTTCCEEEEEEEGGGBCSCSS----SSB
T ss_pred ---cCCcEEEECccccccC----ccccChHHHHHHHHHHHHHHHHH----HHhCCCCEEEEEecceEecCCCC----CCC
Confidence 4799999999975421 23345567889999999987765 45556679999999765532211 112
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
....+..+...|+.||++.+.+++.++.++ . +++++++.|+.+..+.
T Consensus 142 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~--~~~~~~lRp~~v~G~~ 188 (341)
T 3enk_A 142 DETFPLSATNPYGQTKLMAEQILRDVEAAD-P--SWRVATLRYFNPVGAH 188 (341)
T ss_dssp CTTSCCBCSSHHHHHHHHHHHHHHHHHHHC-T--TCEEEEEEECEEECCC
T ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHhhcC-C--CceEEEEeeccccCCc
Confidence 233445566789999999999999999987 3 6999999999998774
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=180.47 Aligned_cols=189 Identities=15% Similarity=0.119 Sum_probs=144.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEE-EcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAM-ELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~D~s~~~~v~~~~~ 140 (298)
.++++++|||||+|+||.+++++|+++|++|++++|+.++.+.+.+.+..... .++.++ .+|++|.++++++++
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~ 82 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYP-----GRFETAVVEDMLKQGAYDEVIK 82 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHST-----TTEEEEECSCTTSTTTTTTTTT
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCC-----CceEEEEecCCcChHHHHHHHc
Confidence 46789999999999999999999999999999999998887766655543221 267888 799999987766543
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC-CCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF-VDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~-~~~~~ 219 (298)
++|++|||||..... +++++.+++|+.++.++++++.+. .+.++||++||...+... .....
T Consensus 83 -------~~d~vih~A~~~~~~-------~~~~~~~~~n~~g~~~ll~~~~~~---~~~~~iv~~SS~~~~~~~~~~~~~ 145 (342)
T 1y1p_A 83 -------GAAGVAHIASVVSFS-------NKYDEVVTPAIGGTLNALRAAAAT---PSVKRFVLTSSTVSALIPKPNVEG 145 (342)
T ss_dssp -------TCSEEEECCCCCSCC-------SCHHHHHHHHHHHHHHHHHHHHTC---TTCCEEEEECCGGGTCCCCTTCCC
T ss_pred -------CCCEEEEeCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHhC---CCCcEEEEeccHHHhcCCCCCCCC
Confidence 699999999975421 356789999999999999988752 345799999998765321 10000
Q ss_pred cccccccc----------------CCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 220 MNVVSGRR----------------KYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 220 ~~~~~~~~----------------~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
..++... +..+...|++||++.+.+++.++.++ .. +++++++.||.+.++...
T Consensus 146 -~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~-~~~~~~~rp~~v~g~~~~ 214 (342)
T 1y1p_A 146 -IYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDEN-KP-HFTLNAVLPNYTIGTIFD 214 (342)
T ss_dssp -CEECTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-CC-SSEEEEEEESEEECCCSC
T ss_pred -cccCccccCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhc-CC-CceEEEEcCCceECCCCC
Confidence 0000100 12345689999999999999999998 54 899999999999999765
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=180.58 Aligned_cols=158 Identities=17% Similarity=0.112 Sum_probs=125.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
+++|++|||||++|||++++++|+++|+ +|++++|++++++... . ..+.++.+|++|+++++++++
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~----~--------~~~~~~~~D~~d~~~~~~~~~ 83 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA----Y--------KNVNQEVVDFEKLDDYASAFQ 83 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG----G--------GGCEEEECCGGGGGGGGGGGS
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc----c--------CCceEEecCcCCHHHHHHHhc
Confidence 3468999999999999999999999999 9999999976543321 0 257889999999988766543
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++|++|||||.... .+++++.+++|+.++..+++++ ++.+.++||++||..++.
T Consensus 84 -------~~d~vi~~ag~~~~-------~~~~~~~~~~n~~~~~~~~~~~----~~~~~~~iv~~SS~~~~~-------- 137 (242)
T 2bka_A 84 -------GHDVGFCCLGTTRG-------KAGAEGFVRVDRDYVLKSAELA----KAGGCKHFNLLSSKGADK-------- 137 (242)
T ss_dssp -------SCSEEEECCCCCHH-------HHHHHHHHHHHTHHHHHHHHHH----HHTTCCEEEEECCTTCCT--------
T ss_pred -------CCCEEEECCCcccc-------cCCcccceeeeHHHHHHHHHHH----HHCCCCEEEEEccCcCCC--------
Confidence 69999999997431 2457889999999999888864 445568999999986543
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCc-EEEEeeCCccccCccC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGI-NVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI-~v~~v~Pg~v~T~~~~ 275 (298)
+....|+++|++++.+++.+ ++ ++++|+||.+.|++..
T Consensus 138 ---------~~~~~Y~~sK~~~e~~~~~~--------~~~~~~~vrpg~v~~~~~~ 176 (242)
T 2bka_A 138 ---------SSNFLYLQVKGEVEAKVEEL--------KFDRYSVFRPGVLLCDRQE 176 (242)
T ss_dssp ---------TCSSHHHHHHHHHHHHHHTT--------CCSEEEEEECCEEECTTGG
T ss_pred ---------CCcchHHHHHHHHHHHHHhc--------CCCCeEEEcCceecCCCCC
Confidence 22356999999999887653 45 8999999999999754
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-22 Score=181.69 Aligned_cols=189 Identities=16% Similarity=0.087 Sum_probs=142.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++|++|||||+|+||.+++++|+++|++|++++|+.++.+. +.+..... ..++.++.+|++|++++.++++.+
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~- 74 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS--WRLKELGI----ENDVKIIHMDLLEFSNIIRTIEKV- 74 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT--HHHHHTTC----TTTEEECCCCTTCHHHHHHHHHHH-
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc--ccHhhccc----cCceeEEECCCCCHHHHHHHHHhc-
Confidence 47899999999999999999999999999999998765432 12222111 136889999999999999998876
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
++|++|||||... .+.+.+++++.+++|+.++.++++++.. +. ..++||++||.+.+..... ...
T Consensus 75 ----~~d~vih~A~~~~----~~~~~~~~~~~~~~Nv~g~~~l~~a~~~-~~--~~~~iv~~SS~~vyg~~~~----~~~ 139 (345)
T 2z1m_A 75 ----QPDEVYNLAAQSF----VGVSFEQPILTAEVDAIGVLRILEALRT-VK--PDTKFYQASTSEMFGKVQE----IPQ 139 (345)
T ss_dssp ----CCSEEEECCCCCC----HHHHTTSHHHHHHHHTHHHHHHHHHHHH-HC--TTCEEEEEEEGGGGCSCSS----SSB
T ss_pred ----CCCEEEECCCCcc----hhhhhhCHHHHHHHHHHHHHHHHHHHHH-hC--CCceEEEEechhhcCCCCC----CCC
Confidence 7999999999743 2234567899999999999999999885 21 1379999999865433211 112
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCC---CCCcEEEEeeCCccccCccC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPA---ESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~---~~gI~v~~v~Pg~v~T~~~~ 275 (298)
....+.++...|++||++.+.+++.++.++ . ..++.++.+.||.+.|.+..
T Consensus 140 ~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~r~~~~~gpg~~~~~~~~ 193 (345)
T 2z1m_A 140 TEKTPFYPRSPYAVAKLFGHWITVNYREAY-NMFACSGILFNHESPLRGIEFVTR 193 (345)
T ss_dssp CTTSCCCCCSHHHHHHHHHHHHHHHHHHHH-CCCEEEEEECCEECTTSCTTSHHH
T ss_pred CccCCCCCCChhHHHHHHHHHHHHHHHHHh-CCceEeeeeeeecCCCCCCcchhH
Confidence 233445667789999999999999999887 3 23456677889988776643
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=176.36 Aligned_cols=187 Identities=16% Similarity=0.073 Sum_probs=143.3
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc-hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL-KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+++|||||+|+||.+++++|+++|++|++++|+. ...+...+.+... .++.++.+|++|+++++++++..
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~-------~~~~~~~~Dl~d~~~~~~~~~~~-- 72 (347)
T 1orr_A 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSL-------GNFEFVHGDIRNKNDVTRLITKY-- 72 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTT-------CCCEEEECCTTCHHHHHHHHHHH--
T ss_pred cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccC-------CceEEEEcCCCCHHHHHHHHhcc--
Confidence 5799999999999999999999999999999853 2333333333321 25788999999999999888762
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc------
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE------ 218 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~------ 218 (298)
++|++|||||... .+.+.++++..+++|+.++.++++++.+.+. +++||++||.+.+......+
T Consensus 73 ---~~d~vih~A~~~~----~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~---~~~iv~~SS~~v~g~~~~~~~~e~~~ 142 (347)
T 1orr_A 73 ---MPDSCFHLAGQVA----MTTSIDNPCMDFEINVGGTLNLLEAVRQYNS---NCNIIYSSTNKVYGDLEQYKYNETET 142 (347)
T ss_dssp ---CCSEEEECCCCCC----HHHHHHCHHHHHHHHHHHHHHHHHHHHHHCT---TCEEEEEEEGGGGTTCTTSCEEECSS
T ss_pred ---CCCEEEECCcccC----hhhhhhCHHHHHHHHHHHHHHHHHHHHHhCC---CceEEEeccHHHhCCCCcCCcccccc
Confidence 7999999999743 1234567889999999999999999988764 26999999986554321110
Q ss_pred ------cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 219 ------DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 219 ------~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.........+.++...|+.+|++.+.+++.++.++ |++++++.||.|.++...
T Consensus 143 ~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilrp~~v~g~~~~ 201 (347)
T 1orr_A 143 RYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF----GLNTVVFRHSSMYGGRQF 201 (347)
T ss_dssp CEEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTCC
T ss_pred cccccccccCccccCCCCCCCchHHHHHHHHHHHHHHHHHh----CCcEEEEccCceeCcCCC
Confidence 00011222344566789999999999999999886 799999999999999754
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-22 Score=180.86 Aligned_cols=189 Identities=16% Similarity=0.061 Sum_probs=147.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
++++++|||||+|+||.+++++|+++|++|++++|+.++.+...+.+.. +.++.++.+|++|++++.++++.+
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dl~d~~~~~~~~~~~ 79 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV-------ADGMQSEIGDIRDQNKLLESIREF 79 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTT-------TTTSEEEECCTTCHHHHHHHHHHH
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhcc-------CCceEEEEccccCHHHHHHHHHhc
Confidence 4578999999999999999999999999999999987765544333211 136889999999999999988875
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
++|++|||||.. ..+.+.+++++.+++|+.++.++++++.+. .+.++||++||...+...... ..
T Consensus 80 -----~~d~vih~A~~~----~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~---~~~~~~v~~SS~~vyg~~~~~---~~ 144 (357)
T 1rkx_A 80 -----QPEIVFHMAAQP----LVRLSYSEPVETYSTNVMGTVYLLEAIRHV---GGVKAVVNITSDKCYDNKEWI---WG 144 (357)
T ss_dssp -----CCSEEEECCSCC----CHHHHHHCHHHHHHHHTHHHHHHHHHHHHH---CCCCEEEEECCGGGBCCCCSS---SC
T ss_pred -----CCCEEEECCCCc----ccccchhCHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEEecCHHHhCCCCcC---CC
Confidence 699999999963 223456778899999999999999998763 235799999998655332110 01
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCC------CCCcEEEEeeCCccccCcc
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPA------ESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~------~~gI~v~~v~Pg~v~T~~~ 274 (298)
.....+..+...|+.+|++.+.+++.++.++ . +.|++++++.||.|.++..
T Consensus 145 ~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~-~~~~~~~~~gi~~~~lrp~~v~G~~~ 201 (357)
T 1rkx_A 145 YRENEAMGGYDPYSNSKGCAELVTSSYRNSF-FNPANYGQHGTAVATVRAGNVIGGGD 201 (357)
T ss_dssp BCTTSCBCCSSHHHHHHHHHHHHHHHHHHHH-SCGGGHHHHCCEEEEEECCCEECTTC
T ss_pred CCCCCCCCCCCccHHHHHHHHHHHHHHHHHH-hhhhccccCCceEEEEeeceeeCCCC
Confidence 1122234566789999999999999999887 3 3489999999999999864
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.3e-22 Score=176.69 Aligned_cols=179 Identities=17% Similarity=0.142 Sum_probs=141.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+.+++|||||+|+||.+++++|+++|++|++++|+.+. +. + .+.++.+|++|++++.++++.
T Consensus 11 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~----l-----------~~~~~~~Dl~d~~~~~~~~~~-- 72 (321)
T 2pk3_A 11 GSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL----P-----------NVEMISLDIMDSQRVKKVISD-- 72 (321)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC----T-----------TEEEEECCTTCHHHHHHHHHH--
T ss_pred CcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc----c-----------eeeEEECCCCCHHHHHHHHHh--
Confidence 45899999999999999999999999999999998654 21 1 477889999999999988876
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+++|++|||||.... +.+.+++++.+++|+.++.++++++ +.+. +.++||++||.+.+.... ++....
T Consensus 73 ---~~~d~vih~A~~~~~----~~~~~~~~~~~~~Nv~g~~~l~~a~-~~~~--~~~~iv~~SS~~v~g~~~--~~~~~~ 140 (321)
T 2pk3_A 73 ---IKPDYIFHLAAKSSV----KDSWLNKKGTFSTNVFGTLHVLDAV-RDSN--LDCRILTIGSSEEYGMIL--PEESPV 140 (321)
T ss_dssp ---HCCSEEEECCSCCCH----HHHTTCHHHHHHHHHHHHHHHHHHH-HHHT--CCCEEEEEEEGGGTBSCC--GGGCSB
T ss_pred ---cCCCEEEEcCcccch----hhhhhcHHHHHHHHHHHHHHHHHHH-HHhC--CCCeEEEEccHHhcCCCC--CCCCCC
Confidence 379999999997532 2334578899999999999999998 5552 457999999986554320 011112
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
....+.++...|+++|++.+.+++.++.+. |++++.+.||.+.++....
T Consensus 141 ~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilrp~~v~g~~~~~ 189 (321)
T 2pk3_A 141 SEENQLRPMSPYGVSKASVGMLARQYVKAY----GMDIIHTRTFNHIGPGQSL 189 (321)
T ss_dssp CTTSCCBCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECTTCCT
T ss_pred CCCCCCCCCCccHHHHHHHHHHHHHHHHHc----CCCEEEEEeCcccCcCCCC
Confidence 233344567789999999999999998886 7999999999999987653
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=164.96 Aligned_cols=152 Identities=14% Similarity=0.100 Sum_probs=118.2
Q ss_pred CEEEEeCCCCchHHHHHHHHH-HcCCEEEEEEcCch-HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLA-ESGAHVVMAVRNLK-AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la-~~G~~Vil~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
|+++||||++|||++++++|+ ++|++|++++|+++ +++++. .. +..+.++.+|++|+++++++++
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~----~~------~~~~~~~~~D~~d~~~~~~~~~--- 72 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI----ID------HERVTVIEGSFQNPGXLEQAVT--- 72 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH----HT------STTEEEEECCTTCHHHHHHHHT---
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc----cC------CCceEEEECCCCCHHHHHHHHc---
Confidence 789999999999999999999 89999999999987 665543 11 1368999999999999888775
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
++|+||||||.. |+. ++.+++.|++.+.++||++||..++.+.+....
T Consensus 73 ----~~d~vv~~ag~~-------------------n~~-----~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~~~---- 120 (221)
T 3r6d_A 73 ----NAEVVFVGAMES-------------------GSD-----MASIVKALSRXNIRRVIGVSMAGLSGEFPVALE---- 120 (221)
T ss_dssp ----TCSEEEESCCCC-------------------HHH-----HHHHHHHHHHTTCCEEEEEEETTTTSCSCHHHH----
T ss_pred ----CCCEEEEcCCCC-------------------Chh-----HHHHHHHHHhcCCCeEEEEeeceecCCCCcccc----
Confidence 689999999953 222 889999999888889999999876654311000
Q ss_pred ccccCCCCcc-cchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 224 SGRRKYTSLM-GYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 224 ~~~~~~~~~~-~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
.. ..+... .|+++|.+++.+.+. .||++++|+||++.++
T Consensus 121 -~~-~~~~~~~~y~~~K~~~e~~~~~--------~~i~~~~vrpg~v~~~ 160 (221)
T 3r6d_A 121 -KW-TFDNLPISYVQGERQARNVLRE--------SNLNYTILRLTWLYND 160 (221)
T ss_dssp -HH-HHHTSCHHHHHHHHHHHHHHHH--------SCSEEEEEEECEEECC
T ss_pred -cc-cccccccHHHHHHHHHHHHHHh--------CCCCEEEEechhhcCC
Confidence 00 001112 699999999876643 4899999999999888
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=177.45 Aligned_cols=188 Identities=13% Similarity=0.097 Sum_probs=143.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 67 TCIVTGSTSGIGREIARQLAES-GAHVVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+|||||+|+||.+++++|+++ |++|++++|+. ...+.+ +++. .+.++.++.+|++|++++.+++++.
T Consensus 2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-~~~~-------~~~~~~~~~~Dl~d~~~~~~~~~~~- 72 (361)
T 1kew_A 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESL-SDIS-------ESNRYNFEHADICDSAEITRIFEQY- 72 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGG-TTTT-------TCTTEEEEECCTTCHHHHHHHHHHH-
T ss_pred EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhh-hhhh-------cCCCeEEEECCCCCHHHHHHHHhhc-
Confidence 4999999999999999999998 79999999875 222221 1111 0136889999999999999988762
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-----CCeEEEEcCCccccCCCC--
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-----PSRIINVNSVMHYVGFVD-- 216 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-----~g~Iv~isS~~~~~~~~~-- 216 (298)
++|+||||||... .+.+.+++++.+++|+.++.++++++.+.|..-+ +++||++||...+.....
T Consensus 73 ----~~d~vih~A~~~~----~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~ 144 (361)
T 1kew_A 73 ----QPDAVMHLAAESH----VDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPD 144 (361)
T ss_dssp ----CCSEEEECCSCCC----HHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGG
T ss_pred ----CCCEEEECCCCcC----hhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccc
Confidence 7999999999753 2335567889999999999999999999875422 369999999754432110
Q ss_pred ----cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 217 ----TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 217 ----~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.++........+.++...|++||++.+.+++.++.++ |++++++.||.|.++...
T Consensus 145 ~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~~vrp~~v~G~~~~ 203 (361)
T 1kew_A 145 EVENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY----GLPTIVTNCSNNYGPYHF 203 (361)
T ss_dssp GSCTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEESTTCC
T ss_pred cccccccCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHh----CCcEEEEeeceeECCCCC
Confidence 0011122333445667889999999999999999887 799999999999999864
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8e-22 Score=177.09 Aligned_cols=179 Identities=11% Similarity=0.142 Sum_probs=131.2
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
+.+..+++++++|||||+|+||.+++++|+++|++|++++|+.....+..+.+ ..+.++.+|++|.+++.
T Consensus 12 ~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l----------~~v~~~~~Dl~d~~~~~ 81 (330)
T 2pzm_A 12 SGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPV----------AGLSVIEGSVTDAGLLE 81 (330)
T ss_dssp --CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSC----------TTEEEEECCTTCHHHHH
T ss_pred cCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhcc----------CCceEEEeeCCCHHHHH
Confidence 45566888999999999999999999999999999999999754332111111 26888999999999999
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
++++++ ++|+||||||..... +.++++ +++|+.++.++++++.. .+.++||++||.+.+.....
T Consensus 82 ~~~~~~-----~~D~vih~A~~~~~~-----~~~~~~--~~~N~~~~~~l~~a~~~----~~~~~iV~~SS~~~~~~~~~ 145 (330)
T 2pzm_A 82 RAFDSF-----KPTHVVHSAAAYKDP-----DDWAED--AATNVQGSINVAKAASK----AGVKRLLNFQTALCYGRPAT 145 (330)
T ss_dssp HHHHHH-----CCSEEEECCCCCSCT-----TCHHHH--HHHHTHHHHHHHHHHHH----HTCSEEEEEEEGGGGCSCSS
T ss_pred HHHhhc-----CCCEEEECCccCCCc-----cccChh--HHHHHHHHHHHHHHHHH----cCCCEEEEecCHHHhCCCcc
Confidence 988875 799999999975432 445666 99999999999999874 34579999999876543211
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcE-EEEeeCCc
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGIN-VVCVSPGI 268 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~-v~~v~Pg~ 268 (298)
.+. ...... .+...|+++|++++.+++.+ ++ ....|| ++.+.||.
T Consensus 146 ~~~--~~~E~~--~~~~~Y~~sK~~~e~~~~~~--~~-~~~~iR~~~v~gp~~ 191 (330)
T 2pzm_A 146 VPI--PIDSPT--APFTSYGISKTAGEAFLMMS--DV-PVVSLRLANVTGPRL 191 (330)
T ss_dssp SSB--CTTCCC--CCCSHHHHHHHHHHHHHHTC--SS-CEEEEEECEEECTTC
T ss_pred CCC--CcCCCC--CCCChHHHHHHHHHHHHHHc--CC-CEEEEeeeeeECcCC
Confidence 000 000100 24568999999999998876 55 444566 56666774
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.5e-21 Score=171.13 Aligned_cols=181 Identities=13% Similarity=0.054 Sum_probs=138.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCch--HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESG--AHVVMAVRNLK--AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|||||+|+||.+++++|+++| ++|++++|+.. ..+.+ +++. .+.++.++.+|++|.+++++++
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~-~~~~-------~~~~~~~~~~Dl~d~~~~~~~~- 73 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANL-KDLE-------DDPRYTFVKGDVADYELVKELV- 73 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGG-TTTT-------TCTTEEEEECCTTCHHHHHHHH-
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHH-hhhc-------cCCceEEEEcCCCCHHHHHHHh-
Confidence 4679999999999999999999997 89999998642 12211 1110 0136889999999999988876
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+++|++|||||... .+.+.+++++.+++|+.++.++++++.+. +..++||++||...+.....
T Consensus 74 ------~~~d~vih~A~~~~----~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~---~~~~~iv~~SS~~vyg~~~~---- 136 (336)
T 2hun_A 74 ------RKVDGVVHLAAESH----VDRSISSPEIFLHSNVIGTYTLLESIRRE---NPEVRFVHVSTDEVYGDILK---- 136 (336)
T ss_dssp ------HTCSEEEECCCCCC----HHHHHHCTHHHHHHHHHHHHHHHHHHHHH---CTTSEEEEEEEGGGGCCCSS----
T ss_pred ------hCCCEEEECCCCcC----hhhhhhCHHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEeccHHHHCCCCC----
Confidence 27999999999743 22345678899999999999999999886 22479999999764432210
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.......+.++...|++||++.+.+++.++.++ |++++++.||.|.++...
T Consensus 137 ~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilrp~~v~g~~~~ 187 (336)
T 2hun_A 137 GSFTENDRLMPSSPYSATKAASDMLVLGWTRTY----NLNASITRCTNNYGPYQF 187 (336)
T ss_dssp SCBCTTBCCCCCSHHHHHHHHHHHHHHHHHHHT----TCEEEEEEECEEESTTCC
T ss_pred CCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh----CCCEEEEeeeeeeCcCCC
Confidence 111223344566789999999999999999886 799999999999998853
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=172.35 Aligned_cols=192 Identities=16% Similarity=0.133 Sum_probs=140.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHH-HcCCEEEEEEcCchH---------HHHHHHHHHHhhcCCCCCcc---EEEEEcCCCC
Q 022369 65 DLTCIVTGSTSGIGREIARQLA-ESGAHVVMAVRNLKA---------ANELIQKWQEEWSGKGLPLN---IEAMELDLLS 131 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la-~~G~~Vil~~r~~~~---------~~~~~~~~~~~~~~~~~~~~---~~~~~~D~s~ 131 (298)
++++|||||+++||.+++++|+ ++|++|++++|+... .+.+.+.+.+.... ..... +.++.+|++|
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Dl~d 80 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP-KPPWADRYAALEVGDVRN 80 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSS-CCTTTTCCCEEEESCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhcc-ccccCCceEEEEECCCCC
Confidence 3589999999999999999999 999999999997654 34443333332110 00113 8899999999
Q ss_pred HHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccc
Q 022369 132 LDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY 211 (298)
Q Consensus 132 ~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~ 211 (298)
++++.+++++ ++++|+||||||..... .+.+++++.+++|+.++.++++++. +.+.++||++||.+.+
T Consensus 81 ~~~~~~~~~~----~~~~d~vih~A~~~~~~----~~~~~~~~~~~~Nv~g~~~ll~a~~----~~~~~~iv~~SS~~v~ 148 (397)
T 1gy8_A 81 EDFLNGVFTR----HGPIDAVVHMCAFLAVG----ESVRDPLKYYDNNVVGILRLLQAML----LHKCDKIIFSSSAAIF 148 (397)
T ss_dssp HHHHHHHHHH----SCCCCEEEECCCCCCHH----HHHHCHHHHHHHHHHHHHHHHHHHH----HTTCCEEEEEEEGGGT
T ss_pred HHHHHHHHHh----cCCCCEEEECCCccCcC----cchhhHHHHHHHHhHHHHHHHHHHH----HhCCCEEEEECCHHHh
Confidence 9998887764 45699999999975321 2456788999999999999999754 3455799999996544
Q ss_pred cCCCC---cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 212 VGFVD---TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 212 ~~~~~---~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
..... .++...+....+..+...|++||++.+.+++.++.++ |++++++.|+.|..+.
T Consensus 149 g~~~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----gi~~~ilRp~~v~G~~ 209 (397)
T 1gy8_A 149 GNPTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY----GIKGICLRYFNACGAH 209 (397)
T ss_dssp BSCCC-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECCC
T ss_pred CCCCcccccccccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHH----CCcEEEEeccceeCCC
Confidence 22110 0001112223333446789999999999999999887 7999999999998774
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-20 Score=171.28 Aligned_cols=185 Identities=14% Similarity=0.043 Sum_probs=141.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch----HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK----AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
++++++|||||+|+||.+++++|+++|++|++++|+.. .++.+.+++.... +..+.++.+|++|.+++.++
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~~~~~ 99 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQ-----WSNFKFIQGDIRNLDDCNNA 99 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHH-----HTTEEEEECCTTSHHHHHHH
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhccccc-----CCceEEEECCCCCHHHHHHH
Confidence 34689999999999999999999999999999999764 3333322221100 02688999999999988877
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++ ++|++|||||.... ..+.+++++.+++|+.++.++++++.+. +.++||++||...+......
T Consensus 100 ~~-------~~d~vih~A~~~~~----~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~~~~v~~SS~~~~~~~~~~- 163 (352)
T 1sb8_A 100 CA-------GVDYVLHQAALGSV----PRSINDPITSNATNIDGFLNMLIAARDA----KVQSFTYAASSSTYGDHPGL- 163 (352)
T ss_dssp HT-------TCSEEEECCSCCCH----HHHHHCHHHHHHHHTHHHHHHHHHHHHT----TCSEEEEEEEGGGGTTCCCS-
T ss_pred hc-------CCCEEEECCcccCc----hhhhhCHHHHHHHHHHHHHHHHHHHHHc----CCCEEEEeccHHhcCCCCCC-
Confidence 65 69999999997431 1244678899999999999999988653 45799999998765443211
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
......+..+...|+.+|++.+.+++.++.++ |++++++.||.+.++...
T Consensus 164 ---~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~ilRp~~v~G~~~~ 213 (352)
T 1sb8_A 164 ---PKVEDTIGKPLSPYAVTKYVNELYADVFSRCY----GFSTIGLRYFNVFGRRQD 213 (352)
T ss_dssp ---SBCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCCEEEEECCEECTTCC
T ss_pred ---CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHc----CCCEEEEEECceeCcCCC
Confidence 11122233456789999999999999998886 799999999999998754
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-21 Score=163.86 Aligned_cols=170 Identities=15% Similarity=0.049 Sum_probs=126.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHc--CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAES--GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~--G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++++||||+++||.+++++|+++ |++|++++|++++++++ +..+.++.+|++|++++.++++
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-------------~~~~~~~~~D~~d~~~~~~~~~ 68 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-------------GGEADVFIGDITDADSINPAFQ 68 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-------------TCCTTEEECCTTSHHHHHHHHT
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-------------CCCeeEEEecCCCHHHHHHHHc
Confidence 35689999999999999999999999 89999999997665432 1256788999999998888764
Q ss_pred HHhcccCCccEEEEccCCCCCCCC---------CccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEP---------QKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY 211 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~---------~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~ 211 (298)
++|++|||||....... .+...+++++.+++|+.++..+++++.. .+.++||++||..+.
T Consensus 69 -------~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~iv~~SS~~~~ 137 (253)
T 1xq6_A 69 -------GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKV----AGVKHIVVVGSMGGT 137 (253)
T ss_dssp -------TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHH----HTCSEEEEEEETTTT
T ss_pred -------CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHH----cCCCEEEEEcCccCC
Confidence 58999999997542111 2223345567899999999998887654 345799999998764
Q ss_pred cCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 212 VGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
.... ...+| ....|+.+|++++.+.+. .|+++++++||.+.++..
T Consensus 138 ~~~~---------~~~~~-~~~~y~~sK~~~e~~~~~--------~~i~~~~vrpg~v~~~~~ 182 (253)
T 1xq6_A 138 NPDH---------PLNKL-GNGNILVWKRKAEQYLAD--------SGTPYTIIRAGGLLDKEG 182 (253)
T ss_dssp CTTC---------GGGGG-GGCCHHHHHHHHHHHHHT--------SSSCEEEEEECEEECSCS
T ss_pred CCCC---------ccccc-cchhHHHHHHHHHHHHHh--------CCCceEEEecceeecCCc
Confidence 3220 00011 113477799998877642 489999999999998864
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.9e-20 Score=170.15 Aligned_cols=193 Identities=11% Similarity=0.060 Sum_probs=138.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHH----------------HHHHHHHHhhcCCCCCccEEEEE
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAAN----------------ELIQKWQEEWSGKGLPLNIEAME 126 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~ 126 (298)
.++..+|||||+|.||.+++++|+++|++|++++|+..... +..+++..... ..+.++.
T Consensus 9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~v~~~~ 83 (404)
T 1i24_A 9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTG-----KSIELYV 83 (404)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHC-----CCCEEEE
T ss_pred cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccC-----CceEEEE
Confidence 45789999999999999999999999999999998754321 11112111111 2678899
Q ss_pred cCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCC-CeEEEE
Q 022369 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSP-SRIINV 205 (298)
Q Consensus 127 ~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~-g~Iv~i 205 (298)
+|++|++++.++++.. ++|++|||||...... ...+.++++..+++|+.|+.++++++.+. +. .+||++
T Consensus 84 ~Dl~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~----~~~~~~V~~ 153 (404)
T 1i24_A 84 GDICDFEFLAESFKSF-----EPDSVVHFGEQRSAPY-SMIDRSRAVYTQHNNVIGTLNVLFAIKEF----GEECHLVKL 153 (404)
T ss_dssp SCTTSHHHHHHHHHHH-----CCSEEEECCSCCCHHH-HTSCHHHHHHHHHHHHHHHHHHHHHHHHH----CTTCEEEEE
T ss_pred CCCCCHHHHHHHHhcc-----CCCEEEECCCCCCccc-hhhCccchhhhHHHHHHHHHHHHHHHHHh----CCCcEEEEe
Confidence 9999999999888765 6999999999753211 12255667889999999999999988653 22 499999
Q ss_pred cCCccccCCCCccccccc---------ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 206 NSVMHYVGFVDTEDMNVV---------SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 206 sS~~~~~~~~~~~~~~~~---------~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
||.+.+.......+.... ....+..+...|++||++.+.+++.++.++ |++++++.||.|.+|..
T Consensus 154 SS~~vyg~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~ivrp~~v~Gp~~ 227 (404)
T 1i24_A 154 GTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQGVVYGVKT 227 (404)
T ss_dssp CCGGGGCCCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECSCC
T ss_pred CcHHHhCCCCCCCCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhc----CCeEEEEecceeeCCCC
Confidence 997654322110000000 000133456789999999999999998886 79999999999998864
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-20 Score=169.14 Aligned_cols=189 Identities=14% Similarity=0.035 Sum_probs=133.8
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHH-HHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAAN-ELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+|++|||||+|+||.+++++|+++|++|++++|+.+... +..+.+.+.... .+.++.++.+|++|++++.++++.+
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~- 77 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHT--CNPKFHLHYGDLSDTSNLTRILREV- 77 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-----------------------CCEEECCCCSSCHHHHHHHHHHH-
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhcccc--CCCceEEEECCCCCHHHHHHHHHhc-
Confidence 378999999999999999999999999999999865421 111122111000 0136888999999999999988875
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
++|++|||||.... ..+.++++..+++|+.++.++++++.+.+.+ +.++||++||.+.+..... ...
T Consensus 78 ----~~d~vih~A~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~~iv~~SS~~v~g~~~~----~~~ 144 (372)
T 1db3_A 78 ----QPDEVYNLGAMSHV----AVSFESPEYTADVDAMGTLRLLEAIRFLGLE-KKTRFYQASTSELYGLVQE----IPQ 144 (372)
T ss_dssp ----CCSEEEECCCCCTT----TTTTSCHHHHHHHHTHHHHHHHHHHHHTTCT-TTCEEEEEEEGGGGTTCCS----SSB
T ss_pred ----CCCEEEECCcccCc----cccccCHHHHHHHHHHHHHHHHHHHHHhCCC-CCcEEEEeCChhhhCCCCC----CCC
Confidence 69999999997542 2345678889999999999999999887654 3479999999765543211 011
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
....+..+...|++||++.+.+++.++.++ ++.+..+.|+.+..|.
T Consensus 145 ~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~~r~~~~~gp~ 190 (372)
T 1db3_A 145 KETTPFYPRSPYAVAKLYAYWITVNYRESY----GMYACNGILFNHESPR 190 (372)
T ss_dssp CTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTT
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHHHHh----CCCeEEEEECCccCCC
Confidence 223344556789999999999999999886 5666666666555443
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-20 Score=169.94 Aligned_cols=186 Identities=15% Similarity=0.152 Sum_probs=139.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcC-------CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESG-------AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLD 133 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G-------~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 133 (298)
..++++++|||||+|+||.+++++|+++| ++|++++|+.++... . ...++.++.+|++|++
T Consensus 10 ~~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-------~-----~~~~~~~~~~Dl~d~~ 77 (342)
T 2hrz_A 10 LYFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-------G-----FSGAVDARAADLSAPG 77 (342)
T ss_dssp SCCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-------T-----CCSEEEEEECCTTSTT
T ss_pred CCccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-------c-----cCCceeEEEcCCCCHH
Confidence 35788999999999999999999999999 899999998653321 0 1237889999999999
Q ss_pred HHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCcccc
Q 022369 134 SVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVMHYV 212 (298)
Q Consensus 134 ~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~~~~ 212 (298)
+++++++ +++|++|||||... ..+.+++++.+++|+.|+.++++++.+...++ +.++||++||.+.+.
T Consensus 78 ~~~~~~~------~~~d~vih~A~~~~-----~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~ 146 (342)
T 2hrz_A 78 EAEKLVE------ARPDVIFHLAAIVS-----GEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFG 146 (342)
T ss_dssp HHHHHHH------TCCSEEEECCCCCH-----HHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCC
T ss_pred HHHHHHh------cCCCEEEECCccCc-----ccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhC
Confidence 9888775 37999999999753 23457789999999999999999987754332 247999999987654
Q ss_pred CCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcC-CCCCcEEEEee--CCccccCc
Q 022369 213 GFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLP-AESGINVVCVS--PGIVSTNV 273 (298)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~-~~~gI~v~~v~--Pg~v~T~~ 273 (298)
.... .......+..+...|+++|++.+.+++.++.+.. ....+|++.|+ ||.+.++.
T Consensus 147 ~~~~----~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~~~~~ 206 (342)
T 2hrz_A 147 APLP----YPIPDEFHTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNAAA 206 (342)
T ss_dssp SSCC----SSBCTTCCCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSCCCSG
T ss_pred CCCC----CCcCCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCCcchh
Confidence 3211 1112233334567899999999999999887641 22346777776 88766543
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-20 Score=166.59 Aligned_cols=183 Identities=19% Similarity=0.123 Sum_probs=135.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH------HHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA------ANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+|++|||||+|+||.+++++|+++|++|++++|+... ..+..+++.+... .++.++.+|++|+++++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~D~~~~~~~~~~ 76 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTG-----RSVEFEEMDILDQGALQRL 76 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHT-----CCCEEEECCTTCHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccC-----CceEEEECCCCCHHHHHHH
Confidence 5789999999999999999999999999999986432 2222333332111 2678899999999999888
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++. ++|++|||||..... .+.+++++.+++|+.++.++++++. +.+.++||++||...+.....
T Consensus 77 ~~~~-----~~d~vih~A~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~----~~~~~~iv~~SS~~~~g~~~~-- 141 (348)
T 1ek6_A 77 FKKY-----SFMAVIHFAGLKAVG----ESVQKPLDYYRVNLTGTIQLLEIMK----AHGVKNLVFSSSATVYGNPQY-- 141 (348)
T ss_dssp HHHC-----CEEEEEECCSCCCHH----HHHHCHHHHHHHHHHHHHHHHHHHH----HTTCCEEEEEEEGGGGCSCSS--
T ss_pred HHhc-----CCCEEEECCCCcCcc----chhhchHHHHHHHHHHHHHHHHHHH----HhCCCEEEEECcHHHhCCCCC--
Confidence 7752 799999999975321 1346778899999999999988653 445579999999765532110
Q ss_pred cccccccccCC-CCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 219 DMNVVSGRRKY-TSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 219 ~~~~~~~~~~~-~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
.......+. |....|+.+|++.+.+++.++.+ ..++++..+.|+.+..+
T Consensus 142 --~~~~E~~~~~p~~~~Y~~sK~~~e~~~~~~~~~---~~~~~~~~lR~~~v~G~ 191 (348)
T 1ek6_A 142 --LPLDEAHPTGGCTNPYGKSKFFIEEMIRDLCQA---DKTWNAVLLRYFNPTGA 191 (348)
T ss_dssp --SSBCTTSCCCCCSSHHHHHHHHHHHHHHHHHHH---CTTCEEEEEEECEEECC
T ss_pred --CCcCCCCCCCCCCCchHHHHHHHHHHHHHHHhc---CCCcceEEEeeccccCC
Confidence 011122222 33678999999999999999887 13699999999988766
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.8e-21 Score=160.42 Aligned_cols=157 Identities=15% Similarity=0.242 Sum_probs=122.8
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCC-HHHHHHHHHHHhcc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLS-LDSVVRFSEAWNGR 145 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~-~~~v~~~~~~~~~~ 145 (298)
+++||||+|+||++++++|+++|++|++++|+.++++.. ..+.++.+|++| ++++.++++
T Consensus 2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--------------~~~~~~~~D~~d~~~~~~~~~~----- 62 (219)
T 3dqp_A 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY--------------NNVKAVHFDVDWTPEEMAKQLH----- 62 (219)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC--------------TTEEEEECCTTSCHHHHHTTTT-----
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc--------------CCceEEEecccCCHHHHHHHHc-----
Confidence 599999999999999999999999999999997654432 268999999999 887766653
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
++|++|||||... .+.+++|+.++..+++++ ++.+.++||++||..+..+....+
T Consensus 63 --~~d~vi~~ag~~~------------~~~~~~n~~~~~~l~~a~----~~~~~~~iv~~SS~~~~~~~~~~e------- 117 (219)
T 3dqp_A 63 --GMDAIINVSGSGG------------KSLLKVDLYGAVKLMQAA----EKAEVKRFILLSTIFSLQPEKWIG------- 117 (219)
T ss_dssp --TCSEEEECCCCTT------------SSCCCCCCHHHHHHHHHH----HHTTCCEEEEECCTTTTCGGGCCS-------
T ss_pred --CCCEEEECCcCCC------------CCcEeEeHHHHHHHHHHH----HHhCCCEEEEECcccccCCCcccc-------
Confidence 6999999999854 127889999999988876 344557999999987654321000
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.+..+...|+.+|++.+.+.+ + ..|++++.+.||.+.++...
T Consensus 118 -~~~~~~~~Y~~sK~~~e~~~~----~---~~~i~~~ilrp~~v~g~~~~ 159 (219)
T 3dqp_A 118 -AGFDALKDYYIAKHFADLYLT----K---ETNLDYTIIQPGALTEEEAT 159 (219)
T ss_dssp -HHHHHTHHHHHHHHHHHHHHH----H---SCCCEEEEEEECSEECSCCC
T ss_pred -cccccccHHHHHHHHHHHHHH----h---ccCCcEEEEeCceEecCCCC
Confidence 111236779999999988776 2 35899999999999887543
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.7e-21 Score=165.58 Aligned_cols=166 Identities=17% Similarity=0.120 Sum_probs=130.1
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|++|||||+++||.+++++|+++|++|++++|+.++.. . ..+.++.+|++|++++.++++
T Consensus 3 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----------~-----~~~~~~~~Dl~d~~~~~~~~~----- 62 (267)
T 3ay3_A 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA----------E-----AHEEIVACDLADAQAVHDLVK----- 62 (267)
T ss_dssp EEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC----------C-----TTEEECCCCTTCHHHHHHHHT-----
T ss_pred ceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc----------C-----CCccEEEccCCCHHHHHHHHc-----
Confidence 68999999999999999999999999999999865310 0 146889999999998887765
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
++|++|||||.. +.+.+++.+++|+.++.++++++.+ .+.++||++||...+...... .....
T Consensus 63 --~~d~vi~~a~~~--------~~~~~~~~~~~n~~~~~~l~~a~~~----~~~~~iv~~SS~~~~~~~~~~---~~~~E 125 (267)
T 3ay3_A 63 --DCDGIIHLGGVS--------VERPWNDILQANIIGAYNLYEAARN----LGKPRIVFASSNHTIGYYPRT---TRIDT 125 (267)
T ss_dssp --TCSEEEECCSCC--------SCCCHHHHHHHTHHHHHHHHHHHHH----TTCCEEEEEEEGGGSTTSBTT---SCBCT
T ss_pred --CCCEEEECCcCC--------CCCCHHHHHHHHHHHHHHHHHHHHH----hCCCEEEEeCCHHHhCCCCCC---CCCCC
Confidence 589999999975 2345788999999999999998764 345799999998765432110 11122
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcc-ccC
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIV-STN 272 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v-~T~ 272 (298)
..+..+...|+.+|++++.+++.++.+ .|++++++.||.+ .++
T Consensus 126 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~~~~ 169 (267)
T 3ay3_A 126 EVPRRPDSLYGLSKCFGEDLASLYYHK----FDIETLNIRIGSCFPKP 169 (267)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHT----TCCCEEEEEECBCSSSC
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHH----cCCCEEEEeceeecCCC
Confidence 233345678999999999999988654 3899999999998 554
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=162.94 Aligned_cols=189 Identities=12% Similarity=-0.002 Sum_probs=143.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
++++++|||||+|+||.+++++|+++|++|++++|+........+.+....... ...++.++.+|++|++++.++++
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~-- 99 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTE-QWSRFCFIEGDIRDLTTCEQVMK-- 99 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHH-HHTTEEEEECCTTCHHHHHHHTT--
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccc-cCCceEEEEccCCCHHHHHHHhc--
Confidence 346899999999999999999999999999999997665554444444321100 00268999999999998877765
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
++|++||+||.... ..+.++.+..+++|+.++.++++++.. .+.+++|++||...+..... ..
T Consensus 100 -----~~d~Vih~A~~~~~----~~~~~~~~~~~~~nv~~~~~ll~a~~~----~~~~~~v~~SS~~vyg~~~~----~~ 162 (351)
T 3ruf_A 100 -----GVDHVLHQAALGSV----PRSIVDPITTNATNITGFLNILHAAKN----AQVQSFTYAASSSTYGDHPA----LP 162 (351)
T ss_dssp -----TCSEEEECCCCCCH----HHHHHCHHHHHHHHTHHHHHHHHHHHH----TTCSEEEEEEEGGGGTTCCC----SS
T ss_pred -----CCCEEEECCccCCc----chhhhCHHHHHHHHHHHHHHHHHHHHH----cCCCEEEEEecHHhcCCCCC----CC
Confidence 69999999997432 234566788999999999999998754 34569999999866543321 11
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.....+..+...|+.+|.+.+.+++.++.+. |++++.+.|+.|..+...
T Consensus 163 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~G~~~~ 211 (351)
T 3ruf_A 163 KVEENIGNPLSPYAVTKYVNEIYAQVYARTY----GFKTIGLRYFNVFGRRQD 211 (351)
T ss_dssp BCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCCEEEEECSEESTTCC
T ss_pred CccCCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCEEEEeeCceeCcCCC
Confidence 1223333456789999999999999998886 799999999999887653
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.3e-21 Score=169.49 Aligned_cols=174 Identities=17% Similarity=0.111 Sum_probs=136.0
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
+++|||||+|+||.+++++|+++|++|++++|+.+...+.. ...+.++.+|++|.+ +.++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~------------~~~~~~~~~Dl~d~~-~~~~~~----- 62 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV------------NPSAELHVRDLKDYS-WGAGIK----- 62 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS------------CTTSEEECCCTTSTT-TTTTCC-----
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc------------CCCceEEECccccHH-HHhhcC-----
Confidence 46999999999999999999999999999999866433221 136788999999987 544332
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
. |++|||||... ...+.++++..+++|+.++.++++++.. .+.++||++||...+..... .....
T Consensus 63 --~-d~vih~A~~~~----~~~~~~~~~~~~~~n~~~~~~l~~a~~~----~~~~~iv~~SS~~vyg~~~~----~~~~e 127 (312)
T 3ko8_A 63 --G-DVVFHFAANPE----VRLSTTEPIVHFNENVVATFNVLEWARQ----TGVRTVVFASSSTVYGDADV----IPTPE 127 (312)
T ss_dssp --C-SEEEECCSSCS----SSGGGSCHHHHHHHHHHHHHHHHHHHHH----HTCCEEEEEEEGGGGCSCSS----SSBCT
T ss_pred --C-CEEEECCCCCC----chhhhhCHHHHHHHHHHHHHHHHHHHHH----cCCCEEEEeCcHHHhCCCCC----CCCCC
Confidence 3 99999999632 3456678899999999999999998743 34569999999876543211 11223
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
..+..+...|+.+|++.+.+++.++.++ |++++.+.||.+.++....
T Consensus 128 ~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----g~~~~~lrp~~v~g~~~~~ 174 (312)
T 3ko8_A 128 EEPYKPISVYGAAKAAGEVMCATYARLF----GVRCLAVRYANVVGPRLRH 174 (312)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECTTCCS
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh----CCCEEEEeeccccCcCCCC
Confidence 3455667889999999999999999987 7999999999999997543
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-20 Score=164.22 Aligned_cols=187 Identities=16% Similarity=0.040 Sum_probs=132.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++|++|||||+|+||.+++++|+++|++|+++.|+.+..+.... +.+ .. ....++.++.+|++|.+++.++++
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~-~~--~~~~~~~~~~~Dl~d~~~~~~~~~--- 76 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKH-LLD-LP--KAETHLTLWKADLADEGSFDEAIK--- 76 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHH-HHT-ST--THHHHEEEEECCTTSTTTTHHHHT---
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHH-HHh-cc--cCCCeEEEEEcCCCCHHHHHHHHc---
Confidence 57899999999999999999999999999999998775443321 111 00 001258889999999998877664
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
.+|++||+|+... .. ..+..++.+++|+.|+.++++++.+.. +.++||++||.+++.+...... ..
T Consensus 77 ----~~d~Vih~A~~~~---~~--~~~~~~~~~~~nv~gt~~ll~a~~~~~---~~~riV~~SS~~~~~~~~~~~~--~~ 142 (337)
T 2c29_D 77 ----GCTGVFHVATPMD---FE--SKDPENEVIKPTIEGMLGIMKSCAAAK---TVRRLVFTSSAGTVNIQEHQLP--VY 142 (337)
T ss_dssp ----TCSEEEECCCCCC---SS--CSSHHHHTHHHHHHHHHHHHHHHHHHS---CCCEEEEECCGGGTSCSSSCCS--EE
T ss_pred ----CCCEEEEeccccC---CC--CCChHHHHHHHHHHHHHHHHHHHHhCC---CccEEEEeeeHhhcccCCCCCc--cc
Confidence 5899999998531 11 123345789999999999999987653 2469999999876554321000 00
Q ss_pred ccccC---------CCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 224 SGRRK---------YTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 224 ~~~~~---------~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
..... .+....|++||++.+.++..++.+. |++++++.||.|.+|...
T Consensus 143 ~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~~lrp~~v~Gp~~~ 199 (337)
T 2c29_D 143 DESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKEN----NIDFITIIPTLVVGPFIM 199 (337)
T ss_dssp CTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHH----TCCEEEEEECEEESCCSC
T ss_pred CcccCCchhhhcccCCccchHHHHHHHHHHHHHHHHHHc----CCcEEEEeCCceECCCCC
Confidence 11100 0133469999999998887776554 799999999999999754
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=165.95 Aligned_cols=185 Identities=16% Similarity=0.052 Sum_probs=137.8
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH-----HHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA-----ANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
|++|||||+++||.+++++|+++|++|++++|+.+. ++.+.+..... .+..+.++.+|++|++++.++++
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~ 99 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAH-----IEGNMKLHYGDLTDSTCLVKIIN 99 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC--------------CEEEEECCTTCHHHHHHHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccc-----cCCCceEEEccCCCHHHHHHHHH
Confidence 689999999999999999999999999999998643 22221111000 01368889999999999999888
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
.+ ++|++|||||.... ..+.++++..+++|+.++.++++++.+.+.+ +.++||++||...+.....
T Consensus 100 ~~-----~~d~vih~A~~~~~----~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~~~~iv~~SS~~~~~~~~~---- 165 (375)
T 1t2a_A 100 EV-----KPTEIYNLGAQSHV----KISFDLAEYTADVDGVGTLRLLDAVKTCGLI-NSVKFYQASTSELYGKVQE---- 165 (375)
T ss_dssp HH-----CCSEEEECCSCCCH----HHHHHSHHHHHHHHTHHHHHHHHHHHHTTCT-TTCEEEEEEEGGGTCSCSS----
T ss_pred hc-----CCCEEEECCCcccc----cccccCHHHHHHHHHHHHHHHHHHHHHhCCC-ccceEEEecchhhhCCCCC----
Confidence 75 69999999997431 2245678899999999999999999886652 2379999999876543211
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
.......+..+...|+.+|++.+.+++.++.++ ++.+..+.|+.+..|.
T Consensus 166 ~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~i~r~~~~~gp~ 214 (375)
T 1t2a_A 166 IPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY----NLFAVNGILFNHESPR 214 (375)
T ss_dssp SSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTT
T ss_pred CCCCccCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCEEEEecccccCCC
Confidence 011222333456789999999999999999886 6888888887776654
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-19 Score=164.18 Aligned_cols=172 Identities=15% Similarity=0.077 Sum_probs=132.0
Q ss_pred CCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 58 LPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 58 ~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
.+..+.++|++|||||+|+||.+++++|+++|++|++++|+.+. ..+.++.+|++|.+++.+
T Consensus 12 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~------------------~~~~~~~~Dl~d~~~~~~ 73 (347)
T 4id9_A 12 SGLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG------------------TGGEEVVGSLEDGQALSD 73 (347)
T ss_dssp ---------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS------------------SCCSEEESCTTCHHHHHH
T ss_pred CcccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC------------------CCccEEecCcCCHHHHHH
Confidence 34457788999999999999999999999999999999998664 156788999999998887
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
+++ ++|++||+|+... .+.+.++..+++|+.++.++++++.. .+.++||++||...+....
T Consensus 74 ~~~-------~~d~vih~A~~~~------~~~~~~~~~~~~nv~~~~~ll~a~~~----~~~~~~V~~SS~~vyg~~~-- 134 (347)
T 4id9_A 74 AIM-------GVSAVLHLGAFMS------WAPADRDRMFAVNVEGTRRLLDAASA----AGVRRFVFASSGEVYPENR-- 134 (347)
T ss_dssp HHT-------TCSEEEECCCCCC------SSGGGHHHHHHHHTHHHHHHHHHHHH----TTCSEEEEEEEGGGTTTTS--
T ss_pred HHh-------CCCEEEECCcccC------cchhhHHHHHHHHHHHHHHHHHHHHH----cCCCeEEEECCHHHhCCCC--
Confidence 765 6999999999643 24456689999999999999998754 4557999999976543310
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccc
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVS 270 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~ 270 (298)
..........+..+...|+.+|++.+.+++.++.+. |++++.+.|+.+.
T Consensus 135 ~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~ 183 (347)
T 4id9_A 135 PEFLPVTEDHPLCPNSPYGLTKLLGEELVRFHQRSG----AMETVILRFSHTQ 183 (347)
T ss_dssp CSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS----SSEEEEEEECEEE
T ss_pred CCCCCcCCCCCCCCCChHHHHHHHHHHHHHHHHHhc----CCceEEEccceEe
Confidence 111122344455667889999999999999998875 7999999999998
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=166.55 Aligned_cols=177 Identities=18% Similarity=0.117 Sum_probs=133.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
++|||||+|+||.+++++|+++|++|++++|+.....+ .+ . ..+.++.+|++|++++.+++++.
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---~~----~-----~~~~~~~~Dl~~~~~~~~~~~~~---- 65 (311)
T 2p5y_A 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE---NV----P-----KGVPFFRVDLRDKEGVERAFREF---- 65 (311)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG---GS----C-----TTCCEECCCTTCHHHHHHHHHHH----
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh---hc----c-----cCeEEEECCCCCHHHHHHHHHhc----
Confidence 59999999999999999999999999999985332110 00 0 14667899999999998888752
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC-CCccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF-VDTEDMNVVSG 225 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~-~~~~~~~~~~~ 225 (298)
++|++||+|+... ...+.++++..+++|+.|++++++++.. .+.++||++||..+..+. ... .....
T Consensus 66 -~~d~vi~~a~~~~----~~~~~~~~~~~~~~N~~g~~~l~~a~~~----~~~~~iv~~SS~~~~~g~~~~~---~~~~E 133 (311)
T 2p5y_A 66 -RPTHVSHQAAQAS----VKVSVEDPVLDFEVNLLGGLNLLEACRQ----YGVEKLVFASTGGAIYGEVPEG---ERAEE 133 (311)
T ss_dssp -CCSEEEECCSCCC----HHHHHHCHHHHHHHHTHHHHHHHHHHHH----TTCSEEEEEEEHHHHHCCCCTT---CCBCT
T ss_pred -CCCEEEECccccC----chhhhhCHHHHHHHHHHHHHHHHHHHHH----hCCCEEEEeCCChhhcCCCCCC---CCcCC
Confidence 6899999999743 1234567889999999999999998753 345799999997332221 100 00112
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
..+..+...|++||++.+.+++.++.++ |++++.+.||.+.+|...
T Consensus 134 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lrp~~v~Gp~~~ 179 (311)
T 2p5y_A 134 TWPPRPKSPYAASKAAFEHYLSVYGQSY----GLKWVSLRYGNVYGPRQD 179 (311)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEECTTCC
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHc----CCCEEEEeeccccCcCCC
Confidence 2233456789999999999999998886 799999999999998754
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5.3e-20 Score=165.99 Aligned_cols=182 Identities=14% Similarity=0.085 Sum_probs=136.8
Q ss_pred CEEEEeCCCCchHHHHHHHHHHc--CCEEEEEEcCchHH-HHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAES--GAHVVMAVRNLKAA-NELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~--G~~Vil~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+++|||||+|+||.+++++|+++ |++|++++|+.... .+..+++ . +.++.++.+|++|++++.++++
T Consensus 5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~----~----~~~~~~~~~Dl~d~~~~~~~~~-- 74 (348)
T 1oc2_A 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI----L----GDRVELVVGDIADAELVDKLAA-- 74 (348)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG----C----SSSEEEEECCTTCHHHHHHHHT--
T ss_pred cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhh----c----cCCeEEEECCCCCHHHHHHHhh--
Confidence 68999999999999999999999 89999999975311 1111111 1 1368899999999998877765
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC------
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD------ 216 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~------ 216 (298)
.+|++|||||... .+.+.+++++.+++|+.++.++++++.+. + ++||++||...+.....
T Consensus 75 -----~~d~vih~A~~~~----~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~----~-~~~v~~SS~~vyg~~~~~~~~~~ 140 (348)
T 1oc2_A 75 -----KADAIVHYAAESH----NDNSLNDPSPFIHTNFIGTYTLLEAARKY----D-IRFHHVSTDEVYGDLPLREDLPG 140 (348)
T ss_dssp -----TCSEEEECCSCCC----HHHHHHCCHHHHHHHTHHHHHHHHHHHHH----T-CEEEEEEEGGGGCCBCCGGGSTT
T ss_pred -----cCCEEEECCcccC----ccchhhCHHHHHHHHHHHHHHHHHHHHHh----C-CeEEEecccceeCCCcccccccc
Confidence 3599999999743 12345677889999999999999998875 2 49999999764432110
Q ss_pred --cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 217 --TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 217 --~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
..+........+.++...|+++|++.+.+++.++.++ |++++++.||.+.++...
T Consensus 141 ~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----gi~~~ilrp~~v~G~~~~ 197 (348)
T 1oc2_A 141 HGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF----GVKATISNCSNNYGPYQH 197 (348)
T ss_dssp TTCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEESTTCC
T ss_pred cccccCCCcCCCCCCCCCCccHHHHHHHHHHHHHHHHHh----CCCEEEEeeceeeCCCCC
Confidence 0000112233344566789999999999999998887 799999999999998864
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.8e-20 Score=164.74 Aligned_cols=172 Identities=20% Similarity=0.186 Sum_probs=127.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
.++|||||+|+||.+++++|+++|++|++++|+.++.+++ .. ..+.++.+|++|.+++.++++
T Consensus 14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l----~~--------~~~~~~~~Dl~d~~~~~~~~~----- 76 (342)
T 2x4g_A 14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRL----AY--------LEPECRVAEMLDHAGLERALR----- 76 (342)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGG----GG--------GCCEEEECCTTCHHHHHHHTT-----
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhh----cc--------CCeEEEEecCCCHHHHHHHHc-----
Confidence 4799999999999999999999999999999987654332 11 157889999999998877654
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
++|++||+||... .+.+++++.+++|+.++.++++++.+. +.++||++||...+....... ....
T Consensus 77 --~~d~vih~a~~~~------~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~~~~v~~SS~~~~~~~~~~~---~~~E 141 (342)
T 2x4g_A 77 --GLDGVIFSAGYYP------SRPRRWQEEVASALGQTNPFYAACLQA----RVPRILYVGSAYAMPRHPQGL---PGHE 141 (342)
T ss_dssp --TCSEEEEC------------------CHHHHHHHHHHHHHHHHHHH----TCSCEEEECCGGGSCCCTTSS---CBCT
T ss_pred --CCCEEEECCccCc------CCCCCHHHHHHHHHHHHHHHHHHHHHc----CCCeEEEECCHHhhCcCCCCC---CCCC
Confidence 5999999999643 234678889999999999999998774 347999999987665432200 0112
Q ss_pred ccCCCC----cccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 226 RRKYTS----LMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 226 ~~~~~~----~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
..+..+ ...|+.+|++.+.+.+.++. . |++++++.||.+.++..
T Consensus 142 ~~~~~p~~~~~~~Y~~sK~~~e~~~~~~~~----~-g~~~~ilrp~~v~g~~~ 189 (342)
T 2x4g_A 142 GLFYDSLPSGKSSYVLCKWALDEQAREQAR----N-GLPVVIGIPGMVLGELD 189 (342)
T ss_dssp TCCCSSCCTTSCHHHHHHHHHHHHHHHHHH----T-TCCEEEEEECEEECSCC
T ss_pred CCCCCccccccChHHHHHHHHHHHHHHHhh----c-CCcEEEEeCCceECCCC
Confidence 222233 67899999999999998865 2 79999999999999875
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-20 Score=166.80 Aligned_cols=183 Identities=16% Similarity=0.017 Sum_probs=129.2
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHH--cCCEEEEEEcCchHHHHHHHH---HHHhhcCCCCCccEEEEEcCCCCHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAE--SGAHVVMAVRNLKAANELIQK---WQEEWSGKGLPLNIEAMELDLLSLDSV 135 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~--~G~~Vil~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~s~~~~v 135 (298)
.++++++||||||+|+||.+++++|++ .|++|++++|+........+. +...... .+..+.++.+|++|++++
T Consensus 6 ~~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Dl~d~~~~ 83 (362)
T 3sxp_A 6 DELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNL--IGFKGEVIAADINNPLDL 83 (362)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGG--TTCCSEEEECCTTCHHHH
T ss_pred hhcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhc--cccCceEEECCCCCHHHH
Confidence 357789999999999999999999999 899999999976521111000 0000000 113578999999999988
Q ss_pred HHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 136 VRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 136 ~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++ ...++|+||||||... .+.++++..+++|+.++.++++++.. .+++||++||...+....
T Consensus 84 ~~~------~~~~~D~vih~A~~~~------~~~~~~~~~~~~Nv~gt~~ll~aa~~-----~~~~~V~~SS~~vyg~~~ 146 (362)
T 3sxp_A 84 RRL------EKLHFDYLFHQAAVSD------TTMLNQELVMKTNYQAFLNLLEIARS-----KKAKVIYASSAGVYGNTK 146 (362)
T ss_dssp HHH------TTSCCSEEEECCCCCG------GGCCCHHHHHHHHTHHHHHHHHHHHH-----TTCEEEEEEEGGGGCSCC
T ss_pred HHh------hccCCCEEEECCccCC------ccccCHHHHHHHHHHHHHHHHHHHHH-----cCCcEEEeCcHHHhCCCC
Confidence 876 2358999999999642 24567899999999999999998733 235699999965443221
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
. ......+..+...|+.||++.+.+++.++.+ +++..+.|+.+..|.
T Consensus 147 ~-----~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~------~~~~~lR~~~v~Gp~ 193 (362)
T 3sxp_A 147 A-----PNVVGKNESPENVYGFSKLCMDEFVLSHSND------NVQVGLRYFNVYGPR 193 (362)
T ss_dssp S-----SBCTTSCCCCSSHHHHHHHHHHHHHHHTTTT------SCEEEEEECSEESTT
T ss_pred C-----CCCCCCCCCCCChhHHHHHHHHHHHHHHhcc------CCEEEEEeCceeCcC
Confidence 1 1223334455677999999999988887554 456666666665554
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.5e-20 Score=165.29 Aligned_cols=185 Identities=18% Similarity=0.094 Sum_probs=124.6
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc-CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
||++|||||+|+||.+++++|+++|++|++++| +.+..+.. +.+.. .. +...++.++.+|++|+++++++++
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-~~~~~-~~--~~~~~~~~~~~Dl~d~~~~~~~~~--- 73 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDV-SFLTN-LP--GASEKLHFFNADLSNPDSFAAAIE--- 73 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCC-HHHHT-ST--THHHHEEECCCCTTCGGGGHHHHT---
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHH-HHHHh-hh--ccCCceEEEecCCCCHHHHHHHHc---
Confidence 588999999999999999999999999999998 65331111 01111 00 001257888999999998887764
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhh-HHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDG-YEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~-~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.+|++||||+.. ..+.++ +++.+++|+.|++++++++.+.+ +.++||++||..++.+...... .
T Consensus 74 ----~~d~vih~A~~~------~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~---~~~~iV~~SS~~~~~~~~~~~~--~ 138 (322)
T 2p4h_X 74 ----GCVGIFHTASPI------DFAVSEPEEIVTKRTVDGALGILKACVNSK---TVKRFIYTSSGSAVSFNGKDKD--V 138 (322)
T ss_dssp ----TCSEEEECCCCC--------------CHHHHHHHHHHHHHHHHHTTCS---SCCEEEEEEEGGGTSCSSSCCS--E
T ss_pred ----CCCEEEEcCCcc------cCCCCChHHHHHHHHHHHHHHHHHHHHhcC---CccEEEEeccHHHcccCCCCCe--e
Confidence 479999999632 112222 45689999999999999987752 3479999999876544221100 0
Q ss_pred cccccC---------CCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 223 VSGRRK---------YTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 223 ~~~~~~---------~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
...... .|....|++||++.+.++..++.+ +|++++++.||.|.+++..
T Consensus 139 ~~e~~~~~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~----~gi~~~~lrp~~v~g~~~~ 196 (322)
T 2p4h_X 139 LDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQ----NGIDVVTLILPFIVGRFVC 196 (322)
T ss_dssp ECTTCCCCHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHH----TTCCEEEEEECEEESCCCS
T ss_pred cCCccccchhhhcccCcccccHHHHHHHHHHHHHHHHHh----cCCcEEEEcCCceECCCCC
Confidence 011000 011126999999877776665544 3899999999999999754
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.5e-20 Score=163.17 Aligned_cols=173 Identities=17% Similarity=0.092 Sum_probs=131.0
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|++|||||+|+||.+++++|+++|..|++..|+....+.. ...+.++.+|+++ +++.++++
T Consensus 2 ~~vlVTGatG~iG~~l~~~L~~~g~~v~~~~~~~~~~~~~-------------~~~~~~~~~Dl~~-~~~~~~~~----- 62 (313)
T 3ehe_A 2 SLIVVTGGAGFIGSHVVDKLSESNEIVVIDNLSSGNEEFV-------------NEAARLVKADLAA-DDIKDYLK----- 62 (313)
T ss_dssp -CEEEETTTSHHHHHHHHHHTTTSCEEEECCCSSCCGGGS-------------CTTEEEECCCTTT-SCCHHHHT-----
T ss_pred CEEEEECCCchHHHHHHHHHHhCCCEEEEEcCCCCChhhc-------------CCCcEEEECcCCh-HHHHHHhc-----
Confidence 5799999999999999999999995555544443322211 1368899999999 87776654
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
++|++||+|+... ...+.+++++.+++|+.++.++++++. +.+.++||++||...+..... .....
T Consensus 63 --~~d~vih~a~~~~----~~~~~~~~~~~~~~nv~~~~~l~~~~~----~~~~~~iv~~SS~~vyg~~~~----~~~~E 128 (313)
T 3ehe_A 63 --GAEEVWHIAANPD----VRIGAENPDEIYRNNVLATYRLLEAMR----KAGVSRIVFTSTSTVYGEAKV----IPTPE 128 (313)
T ss_dssp --TCSEEEECCCCCC----CC-CCCCHHHHHHHHHHHHHHHHHHHH----HHTCCEEEEECCGGGGCSCSS----SSBCT
T ss_pred --CCCEEEECCCCCC----hhhhhhCHHHHHHHHHHHHHHHHHHHH----HcCCCeEEEeCchHHhCcCCC----CCCCC
Confidence 6999999999632 344667889999999999999998743 445679999999766543211 11223
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
..+..+...|+.+|++.+.+++.++.++ |++++.+.|+.+.++...
T Consensus 129 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~ilRp~~v~G~~~~ 174 (313)
T 3ehe_A 129 DYPTHPISLYGASKLACEALIESYCHTF----DMQAWIYRFANVIGRRST 174 (313)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHHT----TCEEEEEECSCEESTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhc----CCCEEEEeeccccCcCCC
Confidence 3345667789999999999999999887 799999999999988644
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-20 Score=167.60 Aligned_cols=183 Identities=16% Similarity=0.086 Sum_probs=137.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.+++++|||||+++||.+++++|+++|++|++++|+..+..... ...+.++.+|++|.+++.++++
T Consensus 27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~------------~~~v~~~~~Dl~d~~~~~~~~~-- 92 (379)
T 2c5a_A 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTED------------MFCDEFHLVDLRVMENCLKVTE-- 92 (379)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGG------------GTCSEEEECCTTSHHHHHHHHT--
T ss_pred ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhc------------cCCceEEECCCCCHHHHHHHhC--
Confidence 35689999999999999999999999999999999865432110 0257889999999998887764
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc-cccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT-EDMN 221 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~-~~~~ 221 (298)
++|++|||||.... ...+.+++++.+++|+.++.++++++.. .+.++||++||...+...... ++..
T Consensus 93 -----~~d~Vih~A~~~~~---~~~~~~~~~~~~~~Nv~g~~~ll~a~~~----~~~~~~V~~SS~~v~~~~~~~~~~~~ 160 (379)
T 2c5a_A 93 -----GVDHVFNLAADMGG---MGFIQSNHSVIMYNNTMISFNMIEAARI----NGIKRFFYASSACIYPEFKQLETTNV 160 (379)
T ss_dssp -----TCSEEEECCCCCCC---HHHHTTCHHHHHHHHHHHHHHHHHHHHH----TTCSEEEEEEEGGGSCGGGSSSSSSC
T ss_pred -----CCCEEEECceecCc---ccccccCHHHHHHHHHHHHHHHHHHHHH----cCCCEEEEEeehheeCCCCCCCccCC
Confidence 69999999997431 1112456888999999999999998754 345699999997654432110 0000
Q ss_pred cccccc--CCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 222 VVSGRR--KYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 222 ~~~~~~--~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
...... +..+...|+.+|++.+.+++.++.+. |++++++.||.+.++...
T Consensus 161 ~~~E~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilrp~~v~G~~~~ 212 (379)
T 2c5a_A 161 SLKESDAWPAEPQDAFGLEKLATEELCKHYNKDF----GIECRIGRFHNIYGPFGT 212 (379)
T ss_dssp EECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTSC
T ss_pred CcCcccCCCCCCCChhHHHHHHHHHHHHHHHHHH----CCCEEEEEeCceeCcCCC
Confidence 011111 33456789999999999999998876 799999999999998654
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.82 E-value=5.8e-20 Score=155.93 Aligned_cols=166 Identities=13% Similarity=0.021 Sum_probs=127.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
+++|||||+|+||.+++++|+++|++|++++|+.++.+.. ...+.++.+|++|++++.++++
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-------------~~~~~~~~~Dl~d~~~~~~~~~----- 66 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE-------------NEHLKVKKADVSSLDEVCEVCK----- 66 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC-------------CTTEEEECCCTTCHHHHHHHHT-----
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc-------------cCceEEEEecCCCHHHHHHHhc-----
Confidence 6899999999999999999999999999999997764322 1378999999999999888765
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
++|++|||||.... ..+.+++|+.++.++.+++.. .+.+++|++||...+.+...... .
T Consensus 67 --~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~Ss~~~~~~~~~~~~-----~ 125 (227)
T 3dhn_A 67 --GADAVISAFNPGWN----------NPDIYDETIKVYLTIIDGVKK----AGVNRFLMVGGAGSLFIAPGLRL-----M 125 (227)
T ss_dssp --TCSEEEECCCC----------------CCSHHHHHHHHHHHHHHH----TTCSEEEEECCSTTSEEETTEEG-----G
T ss_pred --CCCEEEEeCcCCCC----------ChhHHHHHHHHHHHHHHHHHH----hCCCEEEEeCChhhccCCCCCcc-----c
Confidence 58999999986421 112688899998888887644 44569999999876654322111 1
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
..+..+...|+.+|++.+.+.+.++.+ .|++++.+.||.+.++..
T Consensus 126 ~~~~~p~~~Y~~sK~~~e~~~~~~~~~----~~~~~~ilrp~~v~g~~~ 170 (227)
T 3dhn_A 126 DSGEVPENILPGVKALGEFYLNFLMKE----KEIDWVFFSPAADMRPGV 170 (227)
T ss_dssp GTTCSCGGGHHHHHHHHHHHHHTGGGC----CSSEEEEEECCSEEESCC
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHhhc----cCccEEEEeCCcccCCCc
Confidence 223345677999999999888877654 489999999999987753
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=162.46 Aligned_cols=175 Identities=12% Similarity=0.050 Sum_probs=135.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
+++|||||+|+||.+++++|+++|++|++++|+.....+ ... ..+.++.+|++|.+++++++++
T Consensus 2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------~~~-----~~~~~~~~D~~~~~~~~~~~~~---- 65 (330)
T 2c20_A 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHED-------AIT-----EGAKFYNGDLRDKAFLRDVFTQ---- 65 (330)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG-------GSC-----TTSEEEECCTTCHHHHHHHHHH----
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchh-------hcC-----CCcEEEECCCCCHHHHHHHHhh----
Confidence 579999999999999999999999999999997543221 111 1578899999999999888775
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
+++|++||+||.... ..+.+++++.+++|+.++.++++++. +.+.+++|++||...+..... .....
T Consensus 66 -~~~d~vih~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~a~~----~~~~~~~v~~Ss~~~~~~~~~----~~~~E 132 (330)
T 2c20_A 66 -ENIEAVMHFAADSLV----GVSMEKPLQYYNNNVYGALCLLEVMD----EFKVDKFIFSSTAATYGEVDV----DLITE 132 (330)
T ss_dssp -SCEEEEEECCCCCCH----HHHHHSHHHHHHHHHHHHHHHHHHHH----HTTCCEEEEECCGGGGCSCSS----SSBCT
T ss_pred -cCCCEEEECCcccCc----cccccCHHHHHHHHhHHHHHHHHHHH----HcCCCEEEEeCCceeeCCCCC----CCCCc
Confidence 379999999997532 12446788899999999999998764 334579999999765532210 11122
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
..+..+...|+.+|++.+.+++.++.++ |++++.+.||.+.++.
T Consensus 133 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilrp~~v~G~~ 176 (330)
T 2c20_A 133 ETMTNPTNTYGETKLAIEKMLHWYSQAS----NLRYKIFRYFNVAGAT 176 (330)
T ss_dssp TSCCCCSSHHHHHHHHHHHHHHHHHHTS----SCEEEEEECSEEECCC
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHh----CCcEEEEecCcccCCC
Confidence 3333456789999999999999998775 7999999999998774
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=164.03 Aligned_cols=180 Identities=14% Similarity=0.037 Sum_probs=133.6
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH-----HHHHHHHHHHhhcCCCCCc-cEEEEEcCCCCHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA-----ANELIQKWQEEWSGKGLPL-NIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~D~s~~~~v~~~~ 139 (298)
|++|||||+|+||.+++++|+++|++|++++|+.++ ++.+.+.+.. .+. .+.++.+|++|.+++.+++
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~ 102 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHN------VNKALMKLHYADLTDASSLRRWI 102 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------------CCEEEEECCTTCHHHHHHHH
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhcccc------ccccceEEEECCCCCHHHHHHHH
Confidence 689999999999999999999999999999998654 2222211111 012 5788999999999999988
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+.+ ++|++|||||.... ..+.++++..+++|+.++.++++++.+.+.++ +.++||++||...+.....
T Consensus 103 ~~~-----~~d~Vih~A~~~~~----~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-- 171 (381)
T 1n7h_A 103 DVI-----KPDEVYNLAAQSHV----AVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-- 171 (381)
T ss_dssp HHH-----CCSEEEECCSCCCH----HHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS--
T ss_pred Hhc-----CCCEEEECCcccCc----cccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC--
Confidence 875 69999999997432 23456788999999999999999999987653 3579999999865543211
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcc
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIV 269 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v 269 (298)
......+..+...|+.+|++.+.+++.++.++ ++.+..+.|+.+
T Consensus 172 ---~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~~r~~~~ 215 (381)
T 1n7h_A 172 ---PQSETTPFHPRSPYAASKCAAHWYTVNYREAY----GLFACNGILFNH 215 (381)
T ss_dssp ---SBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCE
T ss_pred ---CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCcEEEEEeCce
Confidence 12233344566789999999999999998886 454444444333
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-19 Score=160.48 Aligned_cols=181 Identities=17% Similarity=0.068 Sum_probs=129.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
++|||||+++||.+++++|+++|++|++++|......+..+.+.+... .++.++.+|++|++++.++++..
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~---- 72 (338)
T 1udb_A 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGG-----KHPTFVEGDIRNEALMTEILHDH---- 72 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHT-----SCCEEEECCTTCHHHHHHHHHHT----
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcC-----CcceEEEccCCCHHHHHHHhhcc----
Confidence 589999999999999999999999999998743221122222222111 25788899999999998887752
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
++|++|||||..... .+.++.++.+++|+.++.++++++ ++.+.++||++||.+.+..... ......
T Consensus 73 -~~D~vih~A~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~----~~~~~~~iv~~SS~~~~g~~~~----~~~~e~ 139 (338)
T 1udb_A 73 -AIDTVIHFAGLKAVG----ESVQKPLEYYDNNVNGTLRLISAM----RAANVKNFIFSSSATVYGDNPK----IPYVES 139 (338)
T ss_dssp -TCSEEEECCSCCCHH----HHHHCHHHHHHHHHHHHHHHHHHH----HHHTCCEEEEEEEGGGGCSCCS----SSBCTT
T ss_pred -CCCEEEECCccCccc----cchhcHHHHHHHHHHHHHHHHHHH----HhcCCCeEEEEccHHHhCCCCC----CCcCcc
Confidence 699999999974321 133456788999999999998864 3445579999999765432110 011111
Q ss_pred cCC-CCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 227 RKY-TSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 227 ~~~-~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
.+. +....|++||++++.+++.++.+. .++++..+.|+.+..+
T Consensus 140 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~ilR~~~v~G~ 183 (338)
T 1udb_A 140 FPTGTPQSPYGKSKLMVEQILTDLQKAQ---PDWSIALLRYFNPVGA 183 (338)
T ss_dssp SCCCCCSSHHHHHHHHHHHHHHHHHHHS---TTCEEEEEEECEEECC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHHHhc---CCCceEEEeeceecCC
Confidence 222 336789999999999999999885 3788888887666443
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-19 Score=160.01 Aligned_cols=184 Identities=15% Similarity=0.022 Sum_probs=137.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHH-HHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAAN-ELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
-.++++|||||+|+||.+++++|+++|++|++++|+.+... ...+.+. ....+.++.+|++|++++.++++.
T Consensus 12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~~Dl~d~~~~~~~~~~ 84 (335)
T 1rpn_A 12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELG-------IEGDIQYEDGDMADACSVQRAVIK 84 (335)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTT-------CGGGEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhcc-------ccCceEEEECCCCCHHHHHHHHHH
Confidence 34688999999999999999999999999999999865421 1111110 113688999999999999998887
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
. ++|++|||||.... ..+.++++..+++|+.++.++++++.+. + .++||++||...+.....
T Consensus 85 ~-----~~d~Vih~A~~~~~----~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~~~~~~v~~SS~~v~g~~~~---- 147 (335)
T 1rpn_A 85 A-----QPQEVYNLAAQSFV----GASWNQPVTTGVVDGLGVTHLLEAIRQF----SPETRFYQASTSEMFGLIQA---- 147 (335)
T ss_dssp H-----CCSEEEECCSCCCH----HHHTTSHHHHHHHHTHHHHHHHHHHHHH----CTTSEEEEEEEGGGGCSCSS----
T ss_pred c-----CCCEEEECccccch----hhhhhChHHHHHHHHHHHHHHHHHHHHh----CCCCeEEEEeCHHHhCCCCC----
Confidence 5 69999999996431 1223567889999999999999988653 3 369999999765543211
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
.......+..+...|+.+|++.+.+++.++.++ ++++..+.|+.+..+..
T Consensus 148 ~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----~~~~~i~r~~~v~Gp~~ 197 (335)
T 1rpn_A 148 ERQDENTPFYPRSPYGVAKLYGHWITVNYRESF----GLHASSGILFNHESPLR 197 (335)
T ss_dssp SSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTS
T ss_pred CCCCcccCCCCCChhHHHHHHHHHHHHHHHHHc----CCcEEEEeeCcccCCCC
Confidence 011222333456789999999999999998876 68888899988877653
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.4e-19 Score=159.31 Aligned_cols=178 Identities=15% Similarity=0.097 Sum_probs=135.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHc---C---CEEEEEEcCchH--HHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAES---G---AHVVMAVRNLKA--ANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~---G---~~Vil~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
++|||||+|+||.+++++|+++ | ++|++++|+... .+.+ +.+. . +.++.++.+|++|+++++++
T Consensus 2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~-~~~~----~---~~~~~~~~~Dl~d~~~~~~~ 73 (337)
T 1r6d_A 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANL-APVD----A---DPRLRFVHGDIRDAGLLARE 73 (337)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGG-GGGT----T---CTTEEEEECCTTCHHHHHHH
T ss_pred eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhh-hhcc----c---CCCeEEEEcCCCCHHHHHHH
Confidence 5999999999999999999997 8 999999986421 1111 1110 0 13688999999999988776
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+ .++|++|||||.... +.+.+++++.+++|+.++.++++++.+. +.++||++||.+.+.....
T Consensus 74 ~-------~~~d~Vih~A~~~~~----~~~~~~~~~~~~~Nv~~~~~l~~a~~~~----~~~~~v~~SS~~vyg~~~~-- 136 (337)
T 1r6d_A 74 L-------RGVDAIVHFAAESHV----DRSIAGASVFTETNVQGTQTLLQCAVDA----GVGRVVHVSTNQVYGSIDS-- 136 (337)
T ss_dssp T-------TTCCEEEECCSCCCH----HHHHHCCHHHHHHHTHHHHHHHHHHHHT----TCCEEEEEEEGGGGCCCSS--
T ss_pred h-------cCCCEEEECCCccCc----hhhhhCHHHHHHHHHHHHHHHHHHHHHc----CCCEEEEecchHHhCCCCC--
Confidence 5 479999999997431 2344667889999999999999998775 3469999999765432211
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.......+..+...|+.||++.+.+++.++.++ |++++.+.||.+.++...
T Consensus 137 --~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----g~~~~ilrp~~v~G~~~~ 187 (337)
T 1r6d_A 137 --GSWTESSPLEPNSPYAASKAGSDLVARAYHRTY----GLDVRITRCCNNYGPYQH 187 (337)
T ss_dssp --SCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEECTTCC
T ss_pred --CCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHH----CCCEEEEEeeeeECCCCC
Confidence 111223344566789999999999999998886 699999999999998753
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-19 Score=166.19 Aligned_cols=190 Identities=17% Similarity=0.110 Sum_probs=133.2
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch---HHHHHHHHHHHhhcC---CCCCccEEEEEcCCCCHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK---AANELIQKWQEEWSG---KGLPLNIEAMELDLLSLD 133 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~s~~~ 133 (298)
.....++++|||||+|+||.+++++|++.|++|++++|+.+ ..+.+.+.+...... ...+.++.++.+|++|++
T Consensus 64 ~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 143 (427)
T 4f6c_A 64 LSHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMD 143 (427)
T ss_dssp SCCCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---C
T ss_pred CCCCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcc
Confidence 34556789999999999999999999999999999999987 444444444332100 000137899999999988
Q ss_pred HHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccC
Q 022369 134 SVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213 (298)
Q Consensus 134 ~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~ 213 (298)
++. .++++|+||||||... ..+++++.+++|+.++.++++++.+ +.++||++||... +
T Consensus 144 ~l~--------~~~~~d~Vih~A~~~~-------~~~~~~~~~~~Nv~g~~~l~~aa~~-----~~~~~v~~SS~~~--G 201 (427)
T 4f6c_A 144 DVV--------LPENMDTIIHAGARTD-------HFGDDDEFEKVNVQGTVDVIRLAQQ-----HHARLIYVSTISV--G 201 (427)
T ss_dssp CCC--------CSSCCSEEEECCCCC--------------CHHHHHHHHHHHHHHHHHH-----TTCEEEEEEEGGG--G
T ss_pred cCC--------CcCCCCEEEECCcccC-------CCCCHHHHHHHHHHHHHHHHHHHHh-----cCCcEEEECchHh--C
Confidence 776 4578999999999753 2356888999999999999999876 3469999999876 2
Q ss_pred CCCc--ccccccccccC---CCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 214 FVDT--EDMNVVSGRRK---YTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 214 ~~~~--~~~~~~~~~~~---~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
.... .....+....+ ......|+.+|++.+.+.+.++. .|++++++.||.|.++....
T Consensus 202 ~~~~~~~~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~g~~~~ivRpg~v~G~~~~~ 264 (427)
T 4f6c_A 202 TYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN-----NGLDGRIVRVGNLTSPYNGR 264 (427)
T ss_dssp SEECSSCSCCEECTTCSCSSCCCCSHHHHHHHHHHHHHHHHHH-----TTCCEEEEEECCEESCSSSC
T ss_pred CCccCCCCCccccccccccCCCCCCchHHHHHHHHHHHHHHHH-----cCCCEEEEeCCeeecCCCCC
Confidence 2100 00011111111 23667899999999999988653 47999999999998887554
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=162.47 Aligned_cols=188 Identities=13% Similarity=0.054 Sum_probs=135.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
..+++++|||||+|+||.+++++|+++| .+|+..+|+..... .+.+... .....+.++.+|++|++++.+++
T Consensus 21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~--~~~l~~~----~~~~~~~~~~~Dl~d~~~~~~~~ 94 (346)
T 4egb_A 21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGN--LNNVKSI----QDHPNYYFVKGEIQNGELLEHVI 94 (346)
T ss_dssp ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCC--GGGGTTT----TTCTTEEEEECCTTCHHHHHHHH
T ss_pred ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccc--hhhhhhh----ccCCCeEEEEcCCCCHHHHHHHH
Confidence 4567899999999999999999999999 68888887642111 0111111 11137899999999999999998
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+.. ++|++||+||..... .+.++++..+++|+.++..+++++... +.++||++||...+.....
T Consensus 95 ~~~-----~~d~Vih~A~~~~~~----~~~~~~~~~~~~nv~~~~~ll~a~~~~----~~~~~v~~SS~~vy~~~~~--- 158 (346)
T 4egb_A 95 KER-----DVQVIVNFAAESHVD----RSIENPIPFYDTNVIGTVTLLELVKKY----PHIKLVQVSTDEVYGSLGK--- 158 (346)
T ss_dssp HHH-----TCCEEEECCCCC-------------CHHHHHHTHHHHHHHHHHHHS----TTSEEEEEEEGGGGCCCCS---
T ss_pred hhc-----CCCEEEECCcccchh----hhhhCHHHHHHHHHHHHHHHHHHHHhc----CCCEEEEeCchHHhCCCCc---
Confidence 864 699999999975422 244677889999999999999887553 4568999999765543211
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
........+..+...|+.+|++.+.+++.++.+. |++++.+.||.+.++...
T Consensus 159 ~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~G~~~~ 210 (346)
T 4egb_A 159 TGRFTEETPLAPNSPYSSSKASADMIALAYYKTY----QLPVIVTRCSNNYGPYQY 210 (346)
T ss_dssp SCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEESTTCC
T ss_pred CCCcCCCCCCCCCChhHHHHHHHHHHHHHHHHHh----CCCEEEEeecceeCcCCC
Confidence 1112233444566789999999999999998876 799999999999988653
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=162.91 Aligned_cols=179 Identities=15% Similarity=0.059 Sum_probs=123.6
Q ss_pred CCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 58 LPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 58 ~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
.+...++++++|||||+|+||.+++++|+++|++|++++|+.....+.. ... .++.++.+|++|++++.+
T Consensus 14 ~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l-------~~~---~~~~~~~~Dl~d~~~~~~ 83 (333)
T 2q1w_A 14 LVPRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHL-------KDH---PNLTFVEGSIADHALVNQ 83 (333)
T ss_dssp -------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGS-------CCC---TTEEEEECCTTCHHHHHH
T ss_pred eeeecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhH-------hhc---CCceEEEEeCCCHHHHHH
Confidence 3455678899999999999999999999999999999999854321110 000 268889999999999988
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
+++. +++|++|||||..... +.++++ +++|+.++.++++++.+ .+.++||++||...+...+..
T Consensus 84 ~~~~-----~~~D~vih~A~~~~~~-----~~~~~~--~~~N~~~~~~l~~a~~~----~~~~~iV~~SS~~~~g~~~~~ 147 (333)
T 2q1w_A 84 LIGD-----LQPDAVVHTAASYKDP-----DDWYND--TLTNCVGGSNVVQAAKK----NNVGRFVYFQTALCYGVKPIQ 147 (333)
T ss_dssp HHHH-----HCCSEEEECCCCCSCT-----TCHHHH--HHHHTHHHHHHHHHHHH----TTCSEEEEEEEGGGGCSCCCS
T ss_pred HHhc-----cCCcEEEECceecCCC-----ccCChH--HHHHHHHHHHHHHHHHH----hCCCEEEEECcHHHhCCCccc
Confidence 8875 3799999999975432 334555 99999999999999876 345799999997654310000
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHH-HHHHcCCCCCcEEEEeeCCccccCc
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI-LQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~-l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
... ...... .|....|+++|++.+.+++. ++ ++..+.|+.+..+.
T Consensus 148 ~~~-~~~E~~-~p~~~~Y~~sK~~~E~~~~~s~~---------~~~ilR~~~v~gp~ 193 (333)
T 2q1w_A 148 QPV-RLDHPR-NPANSSYAISKSANEDYLEYSGL---------DFVTFRLANVVGPR 193 (333)
T ss_dssp SSB-CTTSCC-CCTTCHHHHHHHHHHHHHHHHTC---------CEEEEEESEEESTT
T ss_pred CCC-CcCCCC-CCCCCchHHHHHHHHHHHHhhhC---------CeEEEeeceEECcC
Confidence 000 011111 23226899999999988876 43 55667777666655
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.81 E-value=7e-20 Score=156.84 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=108.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcC-CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESG-AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G-~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
...|++|||||++|||++++++|+++| ++|++++|+++++++.. ...+.++++|++|+++++++++
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~------------~~~~~~~~~Dl~d~~~~~~~~~- 87 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPY------------PTNSQIIMGDVLNHAALKQAMQ- 87 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSC------------CTTEEEEECCTTCHHHHHHHHT-
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccc------------cCCcEEEEecCCCHHHHHHHhc-
Confidence 445899999999999999999999999 89999999987654321 1368899999999999888765
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
.+|+||||+|.. . ....++.+++.|++.+.++||++||..++.+......
T Consensus 88 ------~~D~vv~~a~~~-----------~-----------~~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~-- 137 (236)
T 3qvo_A 88 ------GQDIVYANLTGE-----------D-----------LDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFV-- 137 (236)
T ss_dssp ------TCSEEEEECCST-----------T-----------HHHHHHHHHHHHHHTTCCEEEEECCCCC-----------
T ss_pred ------CCCEEEEcCCCC-----------c-----------hhHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccc--
Confidence 579999999851 0 1134678899999888899999999876654321000
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.............|..+|. ++ ...||++++|+||++.|+...
T Consensus 138 ~~~~~~~~~~~~~~~~~~~-----------~l-~~~gi~~~~vrPg~i~~~~~~ 179 (236)
T 3qvo_A 138 EWNNAVIGEPLKPFRRAAD-----------AI-EASGLEYTILRPAWLTDEDII 179 (236)
T ss_dssp -------CGGGHHHHHHHH-----------HH-HTSCSEEEEEEECEEECCSCC
T ss_pred cchhhcccchHHHHHHHHH-----------HH-HHCCCCEEEEeCCcccCCCCc
Confidence 0000000111223433332 22 346899999999999887643
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=151.76 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=115.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
++|||||+|+||++++++|+++|++|++++|+.++++++.. ..+.++.+|++|+++ + .+
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~------------~~~~~~~~D~~d~~~-----~----~~ 60 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLG------------ATVATLVKEPLVLTE-----A----DL 60 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTC------------TTSEEEECCGGGCCH-----H----HH
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccC------------CCceEEecccccccH-----h----hc
Confidence 49999999999999999999999999999999877654411 268899999999987 1 23
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
+++|++|||||...... ...+|+.++ +.+++.+++.+ +++|++||..++.+...... ......
T Consensus 61 ~~~d~vi~~ag~~~~~~-----------~~~~n~~~~----~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~-~~~~~~ 123 (224)
T 3h2s_A 61 DSVDAVVDALSVPWGSG-----------RGYLHLDFA----THLVSLLRNSD-TLAVFILGSASLAMPGADHP-MILDFP 123 (224)
T ss_dssp TTCSEEEECCCCCTTSS-----------CTHHHHHHH----HHHHHTCTTCC-CEEEEECCGGGSBCTTCSSC-GGGGCC
T ss_pred ccCCEEEECCccCCCcc-----------hhhHHHHHH----HHHHHHHHHcC-CcEEEEecceeeccCCCCcc-ccccCC
Confidence 57999999999862110 124465554 55666677777 99999999876654322110 011111
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
....+...|+.+|++.+.+ .... ...|++++.+.||.+.++
T Consensus 124 ~~~~~~~~y~~sK~~~e~~----~~~~-~~~~i~~~ivrp~~v~g~ 164 (224)
T 3h2s_A 124 ESAASQPWYDGALYQYYEY----QFLQ-MNANVNWIGISPSEAFPS 164 (224)
T ss_dssp GGGGGSTTHHHHHHHHHHH----HHHT-TCTTSCEEEEEECSBCCC
T ss_pred CCCccchhhHHHHHHHHHH----HHHH-hcCCCcEEEEcCccccCC
Confidence 1111256799999988844 2222 456899999999999877
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-19 Score=164.62 Aligned_cols=180 Identities=13% Similarity=0.113 Sum_probs=131.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcC-CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESG-AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G-~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.+++++++|||||+|+||.+++++|+++| ++|++++|+..... .+.+ . .+. +.+|++|.+.+++++
T Consensus 42 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~----~------~~~-~~~d~~~~~~~~~~~ 108 (357)
T 2x6t_A 42 SGIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNL----V------DLN-IADYMDKEDFLIQIM 108 (357)
T ss_dssp ------CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--GGGT----T------TSC-CSEEEEHHHHHHHHH
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--hhcc----c------Cce-EeeecCcHHHHHHHH
Confidence 34667899999999999999999999999 89999999865421 0011 1 122 678999998888776
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+. ..++++|++|||||.... +.+++++.+++|+.++.++++++.+. +. +||++||...+......
T Consensus 109 ~~--~~~~~~d~Vih~A~~~~~------~~~~~~~~~~~n~~~~~~ll~a~~~~----~~-r~V~~SS~~v~g~~~~~-- 173 (357)
T 2x6t_A 109 AG--EEFGDVEAIFHEGACSST------TEWDGKYMMDNNYQYSKELLHYCLER----EI-PFLYASSAATYGGRTSD-- 173 (357)
T ss_dssp TT--CCCSSCCEEEECCSCCCT------TCCCHHHHHHHTHHHHHHHHHHHHHH----TC-CEEEEEEGGGGCSCSSC--
T ss_pred hh--cccCCCCEEEECCcccCC------ccCCHHHHHHHHHHHHHHHHHHHHHc----CC-eEEEEcchHHhCCCCCC--
Confidence 53 235689999999997542 34567889999999999999998762 34 99999998765432110
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
......+..+...|+.+|++.+.+++.++.+. |++++.+.||.|.++..
T Consensus 174 --~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~Gp~~ 222 (357)
T 2x6t_A 174 --FIESREYEKPLNVFGYSKFLFDEYVRQILPEA----NSQIVGFRYFNVYGPRE 222 (357)
T ss_dssp --CCSSGGGCCCSSHHHHHHHHHHHHHHHHGGGC----SSCEEEEEECEEESSSC
T ss_pred --CcCCcCCCCCCChhHHHHHHHHHHHHHHHHHc----CCCEEEEecCeEECCCC
Confidence 11122233345689999999999999987765 79999999999998864
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-19 Score=163.68 Aligned_cols=180 Identities=13% Similarity=0.019 Sum_probs=133.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcC-CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESG-AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G-~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++++|||||+|+||.+++++|+++| ++|++++|+.+...+. + . ....+.++.+|++|++++.++++
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~---l----~---~~~~v~~~~~Dl~d~~~l~~~~~ 98 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKIN---V----P---DHPAVRFSETSITDDALLASLQD 98 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGG---S----C---CCTTEEEECSCTTCHHHHHHCCS
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhh---c----c---CCCceEEEECCCCCHHHHHHHhh
Confidence 4678899999999999999999999999 9999999986542211 0 0 01368899999999987766543
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++|++||+||.... ..+.+++++.+++|+.++.++++++.. . +.++||++||...+......
T Consensus 99 -------~~d~Vih~A~~~~~----~~~~~~~~~~~~~nv~~~~~ll~a~~~----~~~~~~~V~~SS~~vyg~~~~~-- 161 (377)
T 2q1s_A 99 -------EYDYVFHLATYHGN----QSSIHDPLADHENNTLTTLKLYERLKH----FKRLKKVVYSAAGCSIAEKTFD-- 161 (377)
T ss_dssp -------CCSEEEECCCCSCH----HHHHHCHHHHHHHHTHHHHHHHHHHTT----CSSCCEEEEEEEC-----------
T ss_pred -------CCCEEEECCCccCc----hhhhhCHHHHHHHHHHHHHHHHHHHHH----hCCCCeEEEeCCHHHcCCCCCC--
Confidence 79999999997431 234467888999999999999998743 3 44699999997654322110
Q ss_pred ccccc--ccc---CC-CCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 220 MNVVS--GRR---KY-TSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 220 ~~~~~--~~~---~~-~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
... ... +. .+...|+.+|++.+.+++.++.+. |++++.+.||.+.++..
T Consensus 162 --~~~~~E~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRp~~v~G~~~ 216 (377)
T 2q1s_A 162 --DAKATEETDIVSLHNNDSPYSMSKIFGEFYSVYYHKQH----QLPTVRARFQNVYGPGE 216 (377)
T ss_dssp -------CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTC
T ss_pred --CcCcccccccccccCCCCchHHHHHHHHHHHHHHHHHh----CCCEEEEeeccEECCCC
Confidence 011 111 22 445779999999999999998876 79999999999998875
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=145.11 Aligned_cols=155 Identities=15% Similarity=0.090 Sum_probs=116.3
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+++++||||+++||++++++|+++|++|++++|++++.+.. ...++.++.+|++|++++.++++
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~------------~~~~~~~~~~D~~~~~~~~~~~~---- 66 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE------------GPRPAHVVVGDVLQAADVDKTVA---- 66 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS------------SCCCSEEEESCTTSHHHHHHHHT----
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc------------cCCceEEEEecCCCHHHHHHHHc----
Confidence 47899999999999999999999999999999997654321 01368899999999998877764
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
.+|++|||||.... . + + .++|+.++..+.+++.. .+.++||++||...+.....
T Consensus 67 ---~~d~vi~~a~~~~~---~--~---~---~~~n~~~~~~~~~~~~~----~~~~~~v~~Ss~~~~~~~~~-------- 120 (206)
T 1hdo_A 67 ---GQDAVIVLLGTRND---L--S---P---TTVMSEGARNIVAAMKA----HGVDKVVACTSAFLLWDPTK-------- 120 (206)
T ss_dssp ---TCSEEEECCCCTTC---C--S---C---CCHHHHHHHHHHHHHHH----HTCCEEEEECCGGGTSCTTC--------
T ss_pred ---CCCEEEECccCCCC---C--C---c---cchHHHHHHHHHHHHHH----hCCCeEEEEeeeeeccCccc--------
Confidence 48999999997542 1 1 1 23787787777776543 45579999999865433210
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcc-ccC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIV-STN 272 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v-~T~ 272 (298)
.+ .....|+.+|++++.+.+. .|++++.+.||.+ .++
T Consensus 121 --~~-~~~~~y~~~K~~~e~~~~~--------~~i~~~~lrp~~~~~~~ 158 (206)
T 1hdo_A 121 --VP-PRLQAVTDDHIRMHKVLRE--------SGLKYVAVMPPHIGDQP 158 (206)
T ss_dssp --SC-GGGHHHHHHHHHHHHHHHH--------TCSEEEEECCSEEECCC
T ss_pred --cc-ccchhHHHHHHHHHHHHHh--------CCCCEEEEeCCcccCCC
Confidence 00 1457799999999887642 3799999999998 444
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=162.35 Aligned_cols=185 Identities=16% Similarity=0.081 Sum_probs=125.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHH--HHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELI--QKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+|++|||||+|+||.+++++|+++|++|+++.|+.++.+... ..+. . ..++.++.+|++|++++.++++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~---~----~~~~~~~~~Dl~d~~~~~~~~~-- 79 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQ---E----LGDLKIFRADLTDELSFEAPIA-- 79 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHG---G----GSCEEEEECCTTTSSSSHHHHT--
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcC---C----CCcEEEEecCCCChHHHHHHHc--
Confidence 689999999999999999999999999999999876432211 1221 0 1258889999999988777654
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
++|++||+|+... .. ..+..++.+++|+.|+.++++++.+.+ +.++||++||.+++.+.........
T Consensus 80 -----~~D~Vih~A~~~~---~~--~~~~~~~~~~~nv~gt~~ll~aa~~~~---~v~r~V~~SS~~~~~~~~~~~~~~~ 146 (338)
T 2rh8_A 80 -----GCDFVFHVATPVH---FA--SEDPENDMIKPAIQGVVNVMKACTRAK---SVKRVILTSSAAAVTINQLDGTGLV 146 (338)
T ss_dssp -----TCSEEEEESSCCC---C-----------CHHHHHHHHHHHHHHHHCT---TCCEEEEECCHHHHHHHHHTCSCCC
T ss_pred -----CCCEEEEeCCccC---CC--CCCcHHHHHHHHHHHHHHHHHHHHHcC---CcCEEEEEecHHHeecCCcCCCCcc
Confidence 5899999998542 11 112234589999999999999987643 2469999999864332110000000
Q ss_pred ccccc--------CC-CCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 223 VSGRR--------KY-TSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 223 ~~~~~--------~~-~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.+... +. +....|++||++.+.++..++.+. |++++++.||.|.+|...
T Consensus 147 ~~E~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~~lrp~~v~Gp~~~ 204 (338)
T 2rh8_A 147 VDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEEN----NIDLITVIPTLMAGSSLT 204 (338)
T ss_dssp CCTTTTTCC-------CCCCCCTTSCCHHHHHHHHHHHHH----TCCEEEEEECEEESCCSS
T ss_pred cChhhccchhhccccCCccchHHHHHHHHHHHHHHHHHHc----CCcEEEEeCCceECCCCC
Confidence 00000 00 112269999999888887776554 799999999999999754
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-19 Score=157.76 Aligned_cols=174 Identities=11% Similarity=0.064 Sum_probs=134.6
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHc--CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAES--GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~--G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
++++|||||+|+||.+++++|+++ |++|++++|+..+.+ +.. .+.++.+|++|.+++.+++++.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----~~~---------~~~~~~~D~~d~~~~~~~~~~~ 67 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-----VVN---------SGPFEVVNALDFNQIEHLVEVH 67 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-----HHH---------SSCEEECCTTCHHHHHHHHHHT
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-----ccC---------CCceEEecCCCHHHHHHHHhhc
Confidence 477999999999999999999999 899999999876522 111 3567899999999998887753
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
++|++||+||.... ...++.++.+++|+.++.++++++.+ .+.+++|++||...+...... ..
T Consensus 68 -----~~d~vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~~~~~~~~~---~~ 130 (312)
T 2yy7_A 68 -----KITDIYLMAALLSA-----TAEKNPAFAWDLNMNSLFHVLNLAKA----KKIKKIFWPSSIAVFGPTTPK---EN 130 (312)
T ss_dssp -----TCCEEEECCCCCHH-----HHHHCHHHHHHHHHHHHHHHHHHHHT----TSCSEEECCEEGGGCCTTSCS---SS
T ss_pred -----CCCEEEECCccCCC-----chhhChHHHHHHHHHHHHHHHHHHHH----cCCCEEEEeccHHHhCCCCCC---CC
Confidence 69999999997431 12356788999999999999998755 345699999998765442110 01
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
.....+..+...|+.+|++.+.+++.++.+. |++++.+.||.+..+.
T Consensus 131 ~~e~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lrp~~v~g~~ 177 (312)
T 2yy7_A 131 TPQYTIMEPSTVYGISKQAGERWCEYYHNIY----GVDVRSIRYPGLISWS 177 (312)
T ss_dssp BCSSCBCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEECEEECEEECSS
T ss_pred ccccCcCCCCchhHHHHHHHHHHHHHHHHhc----CCcEEEEeCCeEecCC
Confidence 1122233456789999999999999988776 7999999999998864
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=171.11 Aligned_cols=192 Identities=16% Similarity=0.106 Sum_probs=136.1
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
..+++|++|||||+++||.+++++|+++|++|++++|+.....+..+++..... ..+.++.+|++|++++.++++
T Consensus 7 ~~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~v~~v~~Dl~d~~~l~~~~~ 81 (699)
T 1z45_A 7 SESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTK-----HHIPFYEVDLCDRKGLEKVFK 81 (699)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHT-----SCCCEEECCTTCHHHHHHHHH
T ss_pred cccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccC-----CceEEEEcCCCCHHHHHHHHH
Confidence 346789999999999999999999999999999999976543333333322111 257789999999999988877
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+. ++|+||||||..... ...+..++.+++|+.++.++++++. +.+.++||++||.+.+......++.
T Consensus 82 ~~-----~~D~Vih~A~~~~~~----~~~~~~~~~~~~Nv~gt~~ll~a~~----~~~~~~iV~~SS~~vyg~~~~~~~~ 148 (699)
T 1z45_A 82 EY-----KIDSVIHFAGLKAVG----ESTQIPLRYYHNNILGTVVLLELMQ----QYNVSKFVFSSSATVYGDATRFPNM 148 (699)
T ss_dssp HS-----CCCEEEECCSCCCHH----HHHHSHHHHHHHHHHHHHHHHHHHH----HHTCCEEEEEEEGGGGCCGGGSTTC
T ss_pred hC-----CCCEEEECCcccCcC----ccccCHHHHHHHHHHHHHHHHHHHH----HcCCCEEEEECcHHHhCCCcccccc
Confidence 53 799999999975321 1223456789999999999877653 4455799999997654321100011
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
.......+..+...|+.+|++++.+++.++.+. ..|+++..+.|+.+..+
T Consensus 149 ~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~g~~~~ilR~~~vyG~ 198 (699)
T 1z45_A 149 IPIPEECPLGPTNPYGHTKYAIENILNDLYNSD--KKSWKFAILRYFNPIGA 198 (699)
T ss_dssp CSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHS--TTSCEEEEEEECEEECC
T ss_pred CCccccCCCCCCChHHHHHHHHHHHHHHHHHhc--cCCCcEEEEEeccccCC
Confidence 111222233456789999999999999998875 25899999999887655
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=147.15 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=110.9
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
.+|||||+|+||++++++|+++|++|++++|++++++++. ..+.++.+|++|+++ +. +
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-------------~~~~~~~~D~~d~~~-----~~----~ 59 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-------------KDINILQKDIFDLTL-----SD----L 59 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-------------SSSEEEECCGGGCCH-----HH----H
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-------------CCCeEEeccccChhh-----hh----h
Confidence 5899999999999999999999999999999988766542 157899999999887 11 2
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
.++|++|||||.... ...+|+ ..++.+++.+++.+.+++|++||..++.+...... ....
T Consensus 60 ~~~d~vi~~ag~~~~-------------~~~~~~----~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~---~~~~ 119 (221)
T 3ew7_A 60 SDQNVVVDAYGISPD-------------EAEKHV----TSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNT---LLES 119 (221)
T ss_dssp TTCSEEEECCCSSTT-------------TTTSHH----HHHHHHHHHHCSCCSSEEEEECCCC-----------------
T ss_pred cCCCEEEECCcCCcc-------------ccchHH----HHHHHHHHHHHhcCCceEEEEecceEEEcCCCCcc---cccc
Confidence 579999999998421 123344 44566666677777789999999887665432100 0011
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
.+..+...|+.+|++.+.+ +.+.. ...|++++.+.||.+.++
T Consensus 120 ~~~~~~~~y~~~k~~~e~~-~~~~~---~~~gi~~~ivrp~~v~g~ 161 (221)
T 3ew7_A 120 KGLREAPYYPTARAQAKQL-EHLKS---HQAEFSWTYISPSAMFEP 161 (221)
T ss_dssp -----CCCSCCHHHHHHHH-HHHHT---TTTTSCEEEEECSSCCCC
T ss_pred CCCCCHHHHHHHHHHHHHH-HHHHh---hccCccEEEEeCcceecC
Confidence 1222345699999999876 33322 146899999999999887
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.8e-18 Score=159.61 Aligned_cols=187 Identities=16% Similarity=0.164 Sum_probs=134.8
Q ss_pred CCCCCCCCCEEEEeCCCCchHHHHHHHHHHc---CCEEEEEEcCchHHHHHHHHHHHhhcCCC----------CCccEEE
Q 022369 58 LPLPPVNDLTCIVTGSTSGIGREIARQLAES---GAHVVMAVRNLKAANELIQKWQEEWSGKG----------LPLNIEA 124 (298)
Q Consensus 58 ~~~~~~~~k~vlITGas~GIG~~~a~~la~~---G~~Vil~~r~~~~~~~~~~~~~~~~~~~~----------~~~~~~~ 124 (298)
.+....++++||||||+|+||.+++++|+++ |++|++++|+.+..+. .+++.+...... ...++.+
T Consensus 66 ~~~~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~v~~ 144 (478)
T 4dqv_A 66 LPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDA-RRRLEKTFDSGDPELLRHFKELAADRLEV 144 (478)
T ss_dssp SCCCCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHH-HHHHHGGGCSSCHHHHHHHHHHHTTTEEE
T ss_pred CCCCCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHH-HHHHHHHHHhcchhhhhhhhhhccCceEE
Confidence 3445677899999999999999999999999 9999999998775433 233333222100 0137999
Q ss_pred EEcCCC------CHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC
Q 022369 125 MELDLL------SLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS 198 (298)
Q Consensus 125 ~~~D~s------~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~ 198 (298)
+.+|++ +.+.++++++ ++|++|||||.... +.+++.+++|+.++.++++++.. .+
T Consensus 145 v~~Dl~~~~~gld~~~~~~~~~-------~~D~Vih~Aa~~~~--------~~~~~~~~~Nv~gt~~ll~aa~~----~~ 205 (478)
T 4dqv_A 145 VAGDKSEPDLGLDQPMWRRLAE-------TVDLIVDSAAMVNA--------FPYHELFGPNVAGTAELIRIALT----TK 205 (478)
T ss_dssp EECCTTSGGGGCCHHHHHHHHH-------HCCEEEECCSSCSB--------SSCCEEHHHHHHHHHHHHHHHTS----SS
T ss_pred EEeECCCcccCCCHHHHHHHHc-------CCCEEEECccccCC--------cCHHHHHHHHHHHHHHHHHHHHh----CC
Confidence 999999 5566666655 58999999998542 34567889999999999998754 34
Q ss_pred CCeEEEEcCCccccCCCCcccccccccccC-----------CCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCC
Q 022369 199 PSRIINVNSVMHYVGFVDTEDMNVVSGRRK-----------YTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPG 267 (298)
Q Consensus 199 ~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg 267 (298)
.+++|++||...+...... ......+ ......|+.||++.+.+.+.++.+. |++++++.||
T Consensus 206 ~~~~V~iSS~~v~~~~~~~----~~~E~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ivRpg 277 (478)
T 4dqv_A 206 LKPFTYVSTADVGAAIEPS----AFTEDADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREANDLC----ALPVAVFRCG 277 (478)
T ss_dssp CCCEEEEEEGGGGTTSCTT----TCCSSSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHHHHH----CCCEEEEEEC
T ss_pred CCeEEEEeehhhcCccCCC----CcCCcccccccCcccccccccccchHHHHHHHHHHHHHHHHHh----CCCeEEEECc
Confidence 4699999997543321110 0000000 1122459999999999999988775 7999999999
Q ss_pred ccccC
Q 022369 268 IVSTN 272 (298)
Q Consensus 268 ~v~T~ 272 (298)
.|..+
T Consensus 278 ~v~G~ 282 (478)
T 4dqv_A 278 MILAD 282 (478)
T ss_dssp EEECC
T ss_pred eeeCC
Confidence 99775
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=154.91 Aligned_cols=164 Identities=17% Similarity=0.135 Sum_probs=98.3
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|++|||||+|+||.+++++|+++|++|++++|+.+. . . ++.+|++|++++.++++..
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~---------~---------~--~~~~Dl~d~~~~~~~~~~~-- 59 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR---------P---------K--FEQVNLLDSNAVHHIIHDF-- 59 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC--------------------------------------CHHHHHHH--
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC---------C---------C--eEEecCCCHHHHHHHHHhh--
Confidence 5789999999999999999999999999999987543 0 1 5679999999998888765
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
++|++|||||.... ..+.+++++.+++|+.++.++++++.+. + ++||++||...+.+. . ....
T Consensus 60 ---~~d~vih~A~~~~~----~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~-~~~v~~SS~~v~~~~-~----~~~~ 122 (315)
T 2ydy_A 60 ---QPHVIVHCAAERRP----DVVENQPDAASQLNVDASGNLAKEAAAV----G-AFLIYISSDYVFDGT-N----PPYR 122 (315)
T ss_dssp ---CCSEEEECC-----------------------CHHHHHHHHHHHHH----T-CEEEEEEEGGGSCSS-S----CSBC
T ss_pred ---CCCEEEECCcccCh----hhhhcCHHHHHHHHHHHHHHHHHHHHHc----C-CeEEEEchHHHcCCC-C----CCCC
Confidence 69999999997542 2345778899999999999999998763 2 599999998765541 1 0112
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcccc
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T 271 (298)
...+..+...|+.+|++.+.+++.++.++ ..+|++.|. |...+
T Consensus 123 E~~~~~~~~~Y~~sK~~~e~~~~~~~~~~---~~lR~~~v~-G~~~~ 165 (315)
T 2ydy_A 123 EEDIPAPLNLYGKTKLDGEKAVLENNLGA---AVLRIPILY-GEVEK 165 (315)
T ss_dssp TTSCCCCCSHHHHHHHHHHHHHHHHCTTC---EEEEECSEE-CSCSS
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHhCCCe---EEEeeeeee-CCCCc
Confidence 22333456789999999999998875433 245555555 44444
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=156.48 Aligned_cols=181 Identities=11% Similarity=0.018 Sum_probs=133.4
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCC-CHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLL-SLDSVV 136 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s-~~~~v~ 136 (298)
.+..+.++++|||||+|+||.+++++|+++ |++|++++|+.++.....+ ...+.++.+|++ |.+.+.
T Consensus 18 ~~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~-----------~~~v~~~~~Dl~~d~~~~~ 86 (372)
T 3slg_A 18 GPGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVK-----------HERMHFFEGDITINKEWVE 86 (372)
T ss_dssp -----CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGG-----------STTEEEEECCTTTCHHHHH
T ss_pred CCcccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhcc-----------CCCeEEEeCccCCCHHHHH
Confidence 344567899999999999999999999998 9999999999766544321 037899999999 999988
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
++++ ++|++||+||.... ....++.++.+++|+.++.++++++... + .++|++||...+.....
T Consensus 87 ~~~~-------~~d~Vih~A~~~~~----~~~~~~~~~~~~~nv~~~~~ll~a~~~~----~-~~~v~~SS~~vyg~~~~ 150 (372)
T 3slg_A 87 YHVK-------KCDVILPLVAIATP----ATYVKQPLRVFELDFEANLPIVRSAVKY----G-KHLVFPSTSEVYGMCAD 150 (372)
T ss_dssp HHHH-------HCSEEEECBCCCCH----HHHHHCHHHHHHHHTTTTHHHHHHHHHH----T-CEEEEECCGGGGBSCCC
T ss_pred HHhc-------cCCEEEEcCccccH----HHHhhCHHHHHHHHHHHHHHHHHHHHHh----C-CcEEEeCcHHHhCCCCC
Confidence 8776 48999999997542 1234566788999999999988887543 3 69999999654433211
Q ss_pred ccccccccccc------C-CCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 217 TEDMNVVSGRR------K-YTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 217 ~~~~~~~~~~~------~-~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.+ ..... + ..+...|+.+|.+.+.+.+.++.+ |++++.+.|+.+..+...
T Consensus 151 ~~----~~e~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~-----g~~~~ilRp~~v~G~~~~ 207 (372)
T 3slg_A 151 EQ----FDPDASALTYGPINKPRWIYACSKQLMDRVIWGYGME-----GLNFTLFRPFNWIGPGLD 207 (372)
T ss_dssp SS----BCTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHTT-----TCEEEEEEECSEECSSCC
T ss_pred CC----CCccccccccCCCCCCCCcHHHHHHHHHHHHHHHHHC-----CCCEEEEccccccCCCcc
Confidence 00 00110 0 024457999999999988887643 799999999999888643
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.2e-18 Score=149.17 Aligned_cols=168 Identities=15% Similarity=0.161 Sum_probs=129.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
++++|||||+|+||.+++++|+++|++|++++|+....+ + ..+.++.+|++ .+++.++++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~--------------~~~~~~~~Dl~-~~~~~~~~~---- 61 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-I--------------NDYEYRVSDYT-LEDLINQLN---- 61 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC--------------------CCEEEECCCC-HHHHHHHTT----
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-C--------------CceEEEEcccc-HHHHHHhhc----
Confidence 378999999999999999999999999999999944332 2 14788999999 888777654
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
++|++||+||..... +.++.+++|+.++.++++++.. .+..++|++||...+..... ....
T Consensus 62 ---~~d~Vih~a~~~~~~--------~~~~~~~~n~~~~~~ll~a~~~----~~~~r~v~~SS~~vyg~~~~----~~~~ 122 (311)
T 3m2p_A 62 ---DVDAVVHLAATRGSQ--------GKISEFHDNEILTQNLYDACYE----NNISNIVYASTISAYSDETS----LPWN 122 (311)
T ss_dssp ---TCSEEEECCCCCCSS--------SCGGGTHHHHHHHHHHHHHHHH----TTCCEEEEEEEGGGCCCGGG----CSBC
T ss_pred ---CCCEEEEccccCCCC--------ChHHHHHHHHHHHHHHHHHHHH----cCCCEEEEEccHHHhCCCCC----CCCC
Confidence 799999999975432 4567789999999998888744 34568999999655432211 1112
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
...+..+...|+.+|.+.+.+.+.++.+. |++++.+.|+.+.++...
T Consensus 123 E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----g~~~~ilRp~~v~G~~~~ 169 (311)
T 3m2p_A 123 EKELPLPDLMYGVSKLACEHIGNIYSRKK----GLCIKNLRFAHLYGFNEK 169 (311)
T ss_dssp TTSCCCCSSHHHHHHHHHHHHHHHHHHHS----CCEEEEEEECEEECSCC-
T ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHc----CCCEEEEeeCceeCcCCC
Confidence 23344456789999999999999988765 799999999999988765
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.2e-18 Score=153.83 Aligned_cols=175 Identities=12% Similarity=0.000 Sum_probs=130.0
Q ss_pred CEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH-HHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSL-DSVVRFSEAWN 143 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~-~~v~~~~~~~~ 143 (298)
+++|||||+|+||.+++++|+++ |++|++++|+.++.+.+. . ...+.++.+|++|. +.++++++
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~-------~----~~~~~~~~~D~~~~~~~~~~~~~--- 66 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------N----HPHFHFVEGDISIHSEWIEYHVK--- 66 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGT-------T----CTTEEEEECCTTTCSHHHHHHHH---
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhh-------c----CCCeEEEeccccCcHHHHHhhcc---
Confidence 46999999999999999999998 899999999977654321 0 13688999999984 55666654
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
++|++||+||..... ...+++++.+++|+.++.++++++.. .+ ++||++||...+......+ .
T Consensus 67 ----~~d~vih~A~~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~----~~-~~~v~~SS~~v~g~~~~~~----~ 129 (345)
T 2bll_A 67 ----KCDVVLPLVAIATPI----EYTRNPLRVFELDFEENLRIIRYCVK----YR-KRIIFPSTSEVYGMCSDKY----F 129 (345)
T ss_dssp ----HCSEEEECBCCCCHH----HHHHSHHHHHHHHTHHHHHHHHHHHH----TT-CEEEEECCGGGGBTCCCSS----B
T ss_pred ----CCCEEEEcccccCcc----chhcCHHHHHHHHHHHHHHHHHHHHH----hC-CeEEEEecHHHcCCCCCCC----c
Confidence 479999999974321 12356778999999999999888754 33 7999999976553321110 0
Q ss_pred cccc------C-CCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 224 SGRR------K-YTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 224 ~~~~------~-~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.... + ..+...|+.+|++.+.+++.++.+. |++++.+.||.+.++...
T Consensus 130 ~e~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~----~~~~~ilrp~~v~G~~~~ 184 (345)
T 2bll_A 130 DEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE----GLQFTLFRPFNWMGPRLD 184 (345)
T ss_dssp CTTTCCCBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECSEECSSCC
T ss_pred CCcccccccCcccCcccccHHHHHHHHHHHHHHHHhc----CCCEEEEcCCcccCCCcc
Confidence 1111 0 0233479999999999999998876 799999999999888643
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=3.1e-19 Score=149.98 Aligned_cols=151 Identities=13% Similarity=0.069 Sum_probs=120.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.+++++||||+++||.+++++|+++|+ +|++++|++++ . ..++.++.+|++|++++.+++
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~---------~-------~~~~~~~~~D~~~~~~~~~~~-- 65 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA---------E-------HPRLDNPVGPLAELLPQLDGS-- 65 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC---------C-------CTTEECCBSCHHHHGGGCCSC--
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc---------c-------CCCceEEeccccCHHHHHHhh--
Confidence 367899999999999999999999998 99999998765 0 026788899999887654432
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+|++|||||.... +.+++++.+++|+.++..+++++.+ .+.++||++||...+.
T Consensus 66 -------~d~vi~~a~~~~~------~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~Ss~~~~~--------- 119 (215)
T 2a35_A 66 -------IDTAFCCLGTTIK------EAGSEEAFRAVDFDLPLAVGKRALE----MGARHYLVVSALGADA--------- 119 (215)
T ss_dssp -------CSEEEECCCCCHH------HHSSHHHHHHHHTHHHHHHHHHHHH----TTCCEEEEECCTTCCT---------
T ss_pred -------hcEEEECeeeccc------cCCCHHHHHHhhHHHHHHHHHHHHH----cCCCEEEEECCcccCC---------
Confidence 8999999997431 2456888999999999999998754 3456999999976442
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcE-EEEeeCCccccCcc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGIN-VVCVSPGIVSTNVA 274 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~-v~~v~Pg~v~T~~~ 274 (298)
++...|+.+|++++.+.+. .|++ ++.+.||.+.++..
T Consensus 120 --------~~~~~y~~sK~~~e~~~~~--------~~~~~~~~vrp~~v~g~~~ 157 (215)
T 2a35_A 120 --------KSSIFYNRVKGELEQALQE--------QGWPQLTIARPSLLFGPRE 157 (215)
T ss_dssp --------TCSSHHHHHHHHHHHHHTT--------SCCSEEEEEECCSEESTTS
T ss_pred --------CCccHHHHHHHHHHHHHHH--------cCCCeEEEEeCceeeCCCC
Confidence 2345799999999877653 3798 99999999998754
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=153.55 Aligned_cols=185 Identities=11% Similarity=0.037 Sum_probs=128.0
Q ss_pred CCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 58 LPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 58 ~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
....+++++++|||||+|+||.+++++|+++|++|++++|+........+.+. . ..++.++.+|+.+..
T Consensus 20 ~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~---~----~~~~~~~~~D~~~~~---- 88 (343)
T 2b69_A 20 QGHMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWI---G----HENFELINHDVVEPL---- 88 (343)
T ss_dssp -------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGT---T----CTTEEEEECCTTSCC----
T ss_pred ccccccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhc---c----CCceEEEeCccCChh----
Confidence 34456778999999999999999999999999999999997543211111110 0 136889999998752
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
+.++|++||+||...... ..++.+..+++|+.++.++++++... + .++|++||...+......
T Consensus 89 --------~~~~d~vih~A~~~~~~~----~~~~~~~~~~~n~~~~~~l~~a~~~~----~-~~~v~~SS~~v~g~~~~~ 151 (343)
T 2b69_A 89 --------YIEVDQIYHLASPASPPN----YMYNPIKTLKTNTIGTLNMLGLAKRV----G-ARLLLASTSEVYGDPEVH 151 (343)
T ss_dssp --------CCCCSEEEECCSCCSHHH----HTTCHHHHHHHHHHHHHHHHHHHHHH----T-CEEEEEEEGGGGBSCSSS
T ss_pred --------hcCCCEEEECccccCchh----hhhCHHHHHHHHHHHHHHHHHHHHHh----C-CcEEEECcHHHhCCCCCC
Confidence 457999999999743211 12456788999999999999987653 3 499999997654322110
Q ss_pred c-cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 218 E-DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 218 ~-~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
+ +........+..+...|+.+|++.+.+++.++.+. |++++.+.||.+.++..
T Consensus 152 ~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilrp~~v~G~~~ 205 (343)
T 2b69_A 152 PQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQE----GVEVRVARIFNTFGPRM 205 (343)
T ss_dssp SBCTTCCCBCCSSSTTHHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTC
T ss_pred CCcccccccCCCCCCCCchHHHHHHHHHHHHHHHHHh----CCcEEEEEEcceeCcCC
Confidence 0 00000001233456779999999999999988775 79999999999998864
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=7.1e-18 Score=150.02 Aligned_cols=167 Identities=17% Similarity=0.158 Sum_probs=127.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHc--CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAES--GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~--G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
++|||||+|+||.+++++|+++ |++|++++|+..+.+ .+.++.+|++|++++.+++++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-----------------~~~~~~~D~~d~~~~~~~~~~--- 60 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG-----------------GIKFITLDVSNRDEIDRAVEK--- 60 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT-----------------TCCEEECCTTCHHHHHHHHHH---
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc-----------------CceEEEecCCCHHHHHHHHhh---
Confidence 3899999999999999999998 899999998754321 245788999999999888775
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
.++|++||+||.... .+.++++..+++|+.++.++++++.. .+.+++|++||...+...... ....
T Consensus 61 --~~~d~vih~a~~~~~-----~~~~~~~~~~~~n~~~~~~l~~a~~~----~~~~~~v~~SS~~~~~~~~~~---~~~~ 126 (317)
T 3ajr_A 61 --YSIDAIFHLAGILSA-----KGEKDPALAYKVNMNGTYNILEAAKQ----HRVEKVVIPSTIGVFGPETPK---NKVP 126 (317)
T ss_dssp --TTCCEEEECCCCCHH-----HHHHCHHHHHHHHHHHHHHHHHHHHH----TTCCEEEEEEEGGGCCTTSCS---SSBC
T ss_pred --cCCcEEEECCcccCC-----ccccChHHHhhhhhHHHHHHHHHHHH----cCCCEEEEecCHHHhCCCCCC---CCcc
Confidence 279999999997431 13456788999999999999998754 345699999998766542110 0011
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcccc
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T 271 (298)
...+..+...|+.+|++.+.+++.++.+. |++++.+.|+.+..
T Consensus 127 e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----~~~~~~lR~~~~~g 169 (317)
T 3ajr_A 127 SITITRPRTMFGVTKIAAELLGQYYYEKF----GLDVRSLRYPGIIS 169 (317)
T ss_dssp SSSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEEC
T ss_pred ccccCCCCchHHHHHHHHHHHHHHHHHhc----CCeEEEEecCcEec
Confidence 22233456789999999999999888775 79999998655544
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.6e-18 Score=150.57 Aligned_cols=175 Identities=14% Similarity=0.115 Sum_probs=128.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHcC-CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 67 TCIVTGSTSGIGREIARQLAESG-AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G-~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
++|||||+|+||.+++++|+++| ++|++++|+..... ...+. .+. +.+|+++.+.++++++...
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~----------~~~-~~~d~~~~~~~~~~~~~~~-- 65 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLV----------DLN-IADYMDKEDFLIQIMAGEE-- 65 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHH----------TSC-CSEEEEHHHHHHHHHTTCC--
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcC----------cce-eccccccHHHHHHHHhccc--
Confidence 38999999999999999999999 89999999865421 11111 112 6789999888777655211
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
++++|++||+||.... +.+++++.+++|+.++.++++++... +. ++|++||...+..... .....
T Consensus 66 ~~~~d~vi~~a~~~~~------~~~~~~~~~~~n~~~~~~l~~a~~~~----~~-~~v~~SS~~v~g~~~~----~~~~E 130 (310)
T 1eq2_A 66 FGDVEAIFHEGACSST------TEWDGKYMMDNNYQYSKELLHYCLER----EI-PFLYASSAATYGGRTS----DFIES 130 (310)
T ss_dssp CSSCCEEEECCSCCCT------TCCCHHHHHHHTHHHHHHHHHHHHHH----TC-CEEEEEEGGGGTTCCS----CBCSS
T ss_pred cCCCcEEEECcccccC------cccCHHHHHHHHHHHHHHHHHHHHHc----CC-eEEEEeeHHHhCCCCC----CCCCC
Confidence 2379999999997542 33567889999999999999987653 44 9999999865433211 01112
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
..+..+...|+.+|++.+.+.+.++.+. |++++.+.||.+.++...
T Consensus 131 ~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----g~~~~~lrp~~v~G~~~~ 176 (310)
T 1eq2_A 131 REYEKPLNVYGYSKFLFDEYVRQILPEA----NSQIVGFRYFNVYGPREG 176 (310)
T ss_dssp GGGCCCSSHHHHHHHHHHHHHHHHGGGC----SSCEEEEEECEEESSSCG
T ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHc----CCCEEEEeCCcEECcCCC
Confidence 2233445689999999999999887664 799999999999888643
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.9e-18 Score=145.88 Aligned_cols=154 Identities=18% Similarity=0.127 Sum_probs=116.9
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
+++||||+|+||.+++++|+ +|++|++++|+.+. + . . +.+|++|++++.++++.+
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~-~------------~----~---~~~Dl~~~~~~~~~~~~~---- 56 (273)
T 2ggs_A 2 RTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEI-Q------------G----G---YKLDLTDFPRLEDFIIKK---- 56 (273)
T ss_dssp CEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCC-T------------T----C---EECCTTSHHHHHHHHHHH----
T ss_pred EEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcC-C------------C----C---ceeccCCHHHHHHHHHhc----
Confidence 59999999999999999999 48999999998641 0 0 1 789999999999988875
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
++|++|||||.... +.+.+++++.+++|+.++.++++++.+ . +++||++||...+.+... .....
T Consensus 57 -~~d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~----~-~~~iv~~SS~~~~~~~~~-----~~~e~ 121 (273)
T 2ggs_A 57 -RPDVIINAAAMTDV----DKCEIEKEKAYKINAEAVRHIVRAGKV----I-DSYIVHISTDYVFDGEKG-----NYKEE 121 (273)
T ss_dssp -CCSEEEECCCCCCH----HHHHHCHHHHHHHHTHHHHHHHHHHHH----T-TCEEEEEEEGGGSCSSSC-----SBCTT
T ss_pred -CCCEEEECCcccCh----hhhhhCHHHHHHHhHHHHHHHHHHHHH----h-CCeEEEEecceeEcCCCC-----CcCCC
Confidence 69999999997532 234578899999999999999999864 2 359999999887654321 11122
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEee
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVS 265 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~ 265 (298)
.+..+...|+++|++++.+++. + ....||++.|+
T Consensus 122 ~~~~~~~~Y~~sK~~~e~~~~~----~-~~~~iR~~~v~ 155 (273)
T 2ggs_A 122 DIPNPINYYGLSKLLGETFALQ----D-DSLIIRTSGIF 155 (273)
T ss_dssp SCCCCSSHHHHHHHHHHHHHCC----T-TCEEEEECCCB
T ss_pred CCCCCCCHHHHHHHHHHHHHhC----C-CeEEEeccccc
Confidence 2333457899999999988876 3 32345555554
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-17 Score=146.01 Aligned_cols=166 Identities=15% Similarity=0.140 Sum_probs=127.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.++++|||||+|+||.+++++|+++|++|++++|+. .+|++|.+++.+++++.
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~--------------------------~~D~~d~~~~~~~~~~~- 54 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD--------------------------ELNLLDSRAVHDFFASE- 54 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT--------------------------TCCTTCHHHHHHHHHHH-
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc--------------------------cCCccCHHHHHHHHHhc-
Confidence 357899999999999999999999999999988762 27999999998888764
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
++|++||+||.... .....++.++.+++|+.++.++++++.. .+.+++|++||...+......+ .
T Consensus 55 ----~~d~vih~a~~~~~---~~~~~~~~~~~~~~n~~~~~~l~~~~~~----~~~~~~v~~SS~~vyg~~~~~~----~ 119 (321)
T 1e6u_A 55 ----RIDQVYLAAAKVGG---IVANNTYPADFIYQNMMIESNIIHAAHQ----NDVNKLLFLGSSCIYPKLAKQP----M 119 (321)
T ss_dssp ----CCSEEEECCCCCCC---HHHHHHCHHHHHHHHHHHHHHHHHHHHH----TTCCEEEEECCGGGSCTTCCSS----B
T ss_pred ----CCCEEEEcCeecCC---cchhhhCHHHHHHHHHHHHHHHHHHHHH----hCCCeEEEEccHHHcCCCCCCC----c
Confidence 69999999996421 1223456788899999999999988755 3446999999986654321100 0
Q ss_pred ccc-----cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 224 SGR-----RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 224 ~~~-----~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
... ...|....|+.+|++.+.+.+.++.+. |++++++.||.+.++...
T Consensus 120 ~E~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilrp~~v~G~~~~ 172 (321)
T 1e6u_A 120 AESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQY----GRDYRSVMPTNLYGPHDN 172 (321)
T ss_dssp CGGGTTSSCCCGGGHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEESTTCC
T ss_pred CccccccCCCCCCCCccHHHHHHHHHHHHHHHHHh----CCCEEEEEeCCcCCcCCC
Confidence 111 112223589999999999999988776 799999999999887654
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=145.42 Aligned_cols=155 Identities=19% Similarity=0.310 Sum_probs=120.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+++|||||+|+||.+++++|+++|++|++++|+ .+|++|.+++.+++++.
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~---------------------------~~Dl~d~~~~~~~~~~~-- 62 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ---------------------------DLDITNVLAVNKFFNEK-- 62 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT---------------------------TCCTTCHHHHHHHHHHH--
T ss_pred cceEEEECCCChHHHHHHHHHHhCCCeEEeccCc---------------------------cCCCCCHHHHHHHHHhc--
Confidence 4789999999999999999999999999999986 27999999998888765
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
++|++|||||.... +.+.+++++.+++|+.++.++++++.+. + .+||++||.+.+.+.... ...
T Consensus 63 ---~~d~vih~A~~~~~----~~~~~~~~~~~~~nv~~~~~l~~a~~~~----~-~~iv~~SS~~v~~~~~~~----~~~ 126 (292)
T 1vl0_A 63 ---KPNVVINCAAHTAV----DKCEEQYDLAYKINAIGPKNLAAAAYSV----G-AEIVQISTDYVFDGEAKE----PIT 126 (292)
T ss_dssp ---CCSEEEECCCCCCH----HHHHHCHHHHHHHHTHHHHHHHHHHHHH----T-CEEEEEEEGGGSCSCCSS----CBC
T ss_pred ---CCCEEEECCccCCH----HHHhcCHHHHHHHHHHHHHHHHHHHHHc----C-CeEEEechHHeECCCCCC----CCC
Confidence 69999999997431 2345678899999999999999998663 3 399999998665433110 112
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
...+..+...|+.+|++.+.+++.++. ++..+.|+.+.++
T Consensus 127 E~~~~~~~~~Y~~sK~~~E~~~~~~~~--------~~~~lR~~~v~G~ 166 (292)
T 1vl0_A 127 EFDEVNPQSAYGKTKLEGENFVKALNP--------KYYIVRTAWLYGD 166 (292)
T ss_dssp TTSCCCCCSHHHHHHHHHHHHHHHHCS--------SEEEEEECSEESS
T ss_pred CCCCCCCccHHHHHHHHHHHHHHhhCC--------CeEEEeeeeeeCC
Confidence 222334457899999999998877532 3677888888766
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=160.50 Aligned_cols=178 Identities=12% Similarity=-0.003 Sum_probs=132.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHH-HHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDS-VVRFSE 140 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~-v~~~~~ 140 (298)
++++++|||||+|+||.+++++|+++ |++|++++|+.++.+... . ..++.++.+|++|.++ ++++++
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~-------~----~~~v~~v~~Dl~d~~~~~~~~~~ 381 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL-------N----HPHFHFVEGDISIHSEWIEYHVK 381 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGT-------T----CTTEEEEECCTTTCHHHHHHHHH
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhc-------c----CCceEEEECCCCCcHHHHHHhhc
Confidence 46789999999999999999999998 899999999876543221 0 1368899999999765 555544
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++|++|||||.... ....+++++.+++|+.++.++++++.. .+ +++|++||...+......+
T Consensus 382 -------~~D~Vih~Aa~~~~----~~~~~~~~~~~~~Nv~gt~~ll~aa~~----~~-~r~V~~SS~~vyg~~~~~~-- 443 (660)
T 1z7e_A 382 -------KCDVVLPLVAIATP----IEYTRNPLRVFELDFEENLRIIRYCVK----YR-KRIIFPSTSEVYGMCSDKY-- 443 (660)
T ss_dssp -------HCSEEEECCCCCCT----HHHHHSHHHHHHHHTHHHHHHHHHHHH----TT-CEEEEECCGGGGBTCCSSS--
T ss_pred -------CCCEEEECceecCc----cccccCHHHHHHhhhHHHHHHHHHHHH----hC-CEEEEEecHHHcCCCCCcc--
Confidence 58999999997532 112356788999999999999888765 23 7999999976554321110
Q ss_pred cccccccC-------CCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 221 NVVSGRRK-------YTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ~~~~~~~~-------~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.....+ ..+...|+.||++.+.+++.++.+. |++++++.||.|.++...
T Consensus 444 --~~E~~~~~~~~p~~~p~~~Y~~sK~~~E~~~~~~~~~~----gi~~~ilRpg~v~Gp~~~ 499 (660)
T 1z7e_A 444 --FDEDHSNLIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE----GLQFTLFRPFNWMGPRLD 499 (660)
T ss_dssp --BCTTTCCEEECCTTCTTHHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECSEESTTSS
T ss_pred --cCCCccccccCcccCCCCCcHHHHHHHHHHHHHHHHHc----CCCEEEECCCcccCCCcc
Confidence 011110 1234579999999999999998876 799999999999988753
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-16 Score=141.59 Aligned_cols=175 Identities=13% Similarity=0.044 Sum_probs=125.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.++++++|||||+|+||.+++++|+++|+ +.. .....+..+.+|++|++++.++++.
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~-----------------~~~~~~~~~~~D~~d~~~~~~~~~~ 59 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGAG------LPG-----------------EDWVFVSSKDADLTDTAQTRALFEK 59 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTTC------CTT-----------------CEEEECCTTTCCTTSHHHHHHHHHH
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcCC------ccc-----------------ccccccCceecccCCHHHHHHHHhh
Confidence 35678999999999999999999999997 100 0001334457899999999888876
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc-c
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED-M 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~-~ 220 (298)
. ++|++||+|+... ....+.++.++.+++|+.++.++++++.. .+..++|++||...+......+- .
T Consensus 60 ~-----~~d~Vih~A~~~~---~~~~~~~~~~~~~~~nv~gt~~ll~a~~~----~~~~~~v~~SS~~vyg~~~~~~~~E 127 (319)
T 4b8w_A 60 V-----QPTHVIHLAAMVG---GLFRNIKYNLDFWRKNVHMNDNVLHSAFE----VGARKVVSCLSTCIFPDKTTYPIDE 127 (319)
T ss_dssp S-----CCSEEEECCCCCC---CHHHHTTCHHHHHHHHHHHHHHHHHHHHH----TTCSEEEEECCGGGSCSSCCSSBCG
T ss_pred c-----CCCEEEECceecc---cccccccCHHHHHHHHHHHHHHHHHHHHH----cCCCeEEEEcchhhcCCCCCCCccc
Confidence 3 6999999999742 11223456778899999999999988644 34469999999865433211000 0
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.......+.|....|+.+|.+.+.+.+.++.+. |++++.+.|+.+..+...
T Consensus 128 ~~~~~~~~~p~~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilRp~~v~Gp~~~ 178 (319)
T 4b8w_A 128 TMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQY----GCTFTAVIPTNVFGPHDN 178 (319)
T ss_dssp GGGGBSCCCSSSHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECTTCC
T ss_pred cccccCCCCCCcchHHHHHHHHHHHHHHHHHhh----CCCEEEEeeccccCCCCC
Confidence 000001222333469999999999999988876 799999999999887653
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=8.1e-17 Score=141.28 Aligned_cols=157 Identities=13% Similarity=0.185 Sum_probs=122.8
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
++|||||+|+||.+++++|+++|++|++++|. ++|++|.+++.+++++.
T Consensus 7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~---------------------------~~D~~d~~~~~~~~~~~---- 55 (287)
T 3sc6_A 7 RVIITGANGQLGKQLQEELNPEEYDIYPFDKK---------------------------LLDITNISQVQQVVQEI---- 55 (287)
T ss_dssp EEEEESTTSHHHHHHHHHSCTTTEEEEEECTT---------------------------TSCTTCHHHHHHHHHHH----
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEeccc---------------------------ccCCCCHHHHHHHHHhc----
Confidence 79999999999999999999999999999992 38999999999988875
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
++|++||+||.... ..+.+++++.+++|+.++.++++++... +.++|++||...+.+... ......
T Consensus 56 -~~d~vi~~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~~~~~~-----~~~~v~~SS~~vy~~~~~----~~~~E~ 121 (287)
T 3sc6_A 56 -RPHIIIHCAAYTKV----DQAEKERDLAYVINAIGARNVAVASQLV-----GAKLVYISTDYVFQGDRP----EGYDEF 121 (287)
T ss_dssp -CCSEEEECCCCCCH----HHHTTCHHHHHHHHTHHHHHHHHHHHHH-----TCEEEEEEEGGGSCCCCS----SCBCTT
T ss_pred -CCCEEEECCcccCh----HHHhcCHHHHHHHHHHHHHHHHHHHHHc-----CCeEEEEchhhhcCCCCC----CCCCCC
Confidence 79999999997541 2233578899999999999999987553 248999999866543211 112233
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
.+..+...|+.+|.+.+.+.+.++. +++.+.|+.+.++....
T Consensus 122 ~~~~p~~~Y~~sK~~~E~~~~~~~~--------~~~ilR~~~v~G~~~~~ 163 (287)
T 3sc6_A 122 HNPAPINIYGASKYAGEQFVKELHN--------KYFIVRTSWLYGKYGNN 163 (287)
T ss_dssp SCCCCCSHHHHHHHHHHHHHHHHCS--------SEEEEEECSEECSSSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCC--------CcEEEeeeeecCCCCCc
Confidence 3445567899999999988876532 45788999998875443
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=139.16 Aligned_cols=160 Identities=15% Similarity=0.095 Sum_probs=122.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
++|||||+|+||.+++++|+ +|++|++++|+.+ .+.+|++|.+++.++++..
T Consensus 2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~-----------------------~~~~D~~d~~~~~~~~~~~---- 53 (299)
T 1n2s_A 2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK-----------------------EFCGDFSNPKGVAETVRKL---- 53 (299)
T ss_dssp EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS-----------------------SSCCCTTCHHHHHHHHHHH----
T ss_pred eEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc-----------------------cccccCCCHHHHHHHHHhc----
Confidence 59999999999999999999 8999999999851 2468999999998888764
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
++|++||+||.... ..+.+++++.+++|+.++.++++++... + .++|++||...+.+... ......
T Consensus 54 -~~d~vih~a~~~~~----~~~~~~~~~~~~~n~~~~~~l~~a~~~~----~-~~~v~~SS~~vy~~~~~----~~~~E~ 119 (299)
T 1n2s_A 54 -RPDVIVNAAAHTAV----DKAESEPELAQLLNATSVEAIAKAANET----G-AWVVHYSTDYVFPGTGD----IPWQET 119 (299)
T ss_dssp -CCSEEEECCCCCCH----HHHTTCHHHHHHHHTHHHHHHHHHHTTT----T-CEEEEEEEGGGSCCCTT----CCBCTT
T ss_pred -CCCEEEECcccCCH----hhhhcCHHHHHHHHHHHHHHHHHHHHHc----C-CcEEEEecccEEeCCCC----CCCCCC
Confidence 69999999997431 1233567889999999999999987542 3 48999999866543311 011222
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
.+..+...|+.+|++.+.+.+.++ .+++.+.|+.+.++....
T Consensus 120 ~~~~p~~~Y~~sK~~~E~~~~~~~--------~~~~ilRp~~v~G~~~~~ 161 (299)
T 1n2s_A 120 DATSPLNVYGKTKLAGEKALQDNC--------PKHLIFRTSWVYAGKGNN 161 (299)
T ss_dssp SCCCCSSHHHHHHHHHHHHHHHHC--------SSEEEEEECSEECSSSCC
T ss_pred CCCCCccHHHHHHHHHHHHHHHhC--------CCeEEEeeeeecCCCcCc
Confidence 233445689999999998877652 278899999999886543
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-16 Score=137.39 Aligned_cols=145 Identities=15% Similarity=0.145 Sum_probs=113.4
Q ss_pred CEEEEeCCCCchHHHHHHHHHHc--CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAES--GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~--G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
|++|||||+|+||.+++++|+++ |++|++++|+.++.+++. . ..+.++.+|++|++++.++++
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~----~--------~~~~~~~~D~~d~~~l~~~~~--- 65 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLA----D--------QGVEVRHGDYNQPESLQKAFA--- 65 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHH----H--------TTCEEEECCTTCHHHHHHHTT---
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHh----h--------cCCeEEEeccCCHHHHHHHHh---
Confidence 46999999999999999999999 999999999987665432 1 157788999999998877654
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
++|++||+||... . + ++|+.++.++++++. +.+.++||++||.....
T Consensus 66 ----~~d~vi~~a~~~~-------~-~------~~n~~~~~~l~~a~~----~~~~~~~v~~Ss~~~~~----------- 112 (287)
T 2jl1_A 66 ----GVSKLLFISGPHY-------D-N------TLLIVQHANVVKAAR----DAGVKHIAYTGYAFAEE----------- 112 (287)
T ss_dssp ----TCSEEEECCCCCS-------C-H------HHHHHHHHHHHHHHH----HTTCSEEEEEEETTGGG-----------
T ss_pred ----cCCEEEEcCCCCc-------C-c------hHHHHHHHHHHHHHH----HcCCCEEEEECCCCCCC-----------
Confidence 5899999999521 1 1 578888888877764 34556999999976421
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
....|+.+|.+.+.+.+. .|++++.+.||.+.++.
T Consensus 113 -------~~~~y~~~K~~~E~~~~~--------~~~~~~ilrp~~~~~~~ 147 (287)
T 2jl1_A 113 -------SIIPLAHVHLATEYAIRT--------TNIPYTFLRNALYTDFF 147 (287)
T ss_dssp -------CCSTHHHHHHHHHHHHHH--------TTCCEEEEEECCBHHHH
T ss_pred -------CCCchHHHHHHHHHHHHH--------cCCCeEEEECCEecccc
Confidence 113699999999887642 37999999999998765
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-16 Score=139.98 Aligned_cols=162 Identities=12% Similarity=0.019 Sum_probs=119.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+++++|||| +|+||.+++++|+++|++|++++|+.+++ ...+.++.+|++|.+++.++++
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~----------------~~~~~~~~~Dl~d~~~~~~~~~--- 61 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM----------------PAGVQTLIADVTRPDTLASIVH--- 61 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC----------------CTTCCEEECCTTCGGGCTTGGG---
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc----------------ccCCceEEccCCChHHHHHhhc---
Confidence 357899999 59999999999999999999999987652 1267889999999998776654
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+++|++||+||.. .++.+..+++|+.++.++++++. +.+.+++|++||...+..... ...
T Consensus 62 ---~~~d~vih~a~~~---------~~~~~~~~~~n~~~~~~ll~a~~----~~~~~~~v~~SS~~vyg~~~~----~~~ 121 (286)
T 3gpi_A 62 ---LRPEILVYCVAAS---------EYSDEHYRLSYVEGLRNTLSALE----GAPLQHVFFVSSTGVYGQEVE----EWL 121 (286)
T ss_dssp ---GCCSEEEECHHHH---------HHC-----CCSHHHHHHHHHHTT----TSCCCEEEEEEEGGGCCCCCS----SEE
T ss_pred ---CCCCEEEEeCCCC---------CCCHHHHHHHHHHHHHHHHHHHh----hCCCCEEEEEcccEEEcCCCC----CCC
Confidence 3699999999862 24567788999999999888765 345579999999865543211 111
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
....+..+...|+.+|.+.+.+ +.. ++++.+.|+.+.++...
T Consensus 122 ~E~~~~~p~~~Y~~sK~~~E~~-~~~---------~~~~ilR~~~v~G~~~~ 163 (286)
T 3gpi_A 122 DEDTPPIAKDFSGKRMLEAEAL-LAA---------YSSTILRFSGIYGPGRL 163 (286)
T ss_dssp CTTSCCCCCSHHHHHHHHHHHH-GGG---------SSEEEEEECEEEBTTBC
T ss_pred CCCCCCCCCChhhHHHHHHHHH-Hhc---------CCeEEEecccccCCCch
Confidence 2333445567899999998876 331 78999999999877644
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.65 E-value=9.5e-16 Score=145.45 Aligned_cols=185 Identities=17% Similarity=0.108 Sum_probs=128.6
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH---HHHHHHHHHHhhcC---CCCCccEEEEEcCCCCHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA---ANELIQKWQEEWSG---KGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
.++||||||+|+||.+++++|.+.|++|++++|+... .+.+.+.+...... .....++.++.+|+++++.+.
T Consensus 150 ~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-- 227 (508)
T 4f6l_B 150 LGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-- 227 (508)
T ss_dssp CEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC--
T ss_pred CCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC--
Confidence 4799999999999999999999999999999998773 33333333221000 000137999999999987776
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc-
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT- 217 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~- 217 (298)
...++|++||||+... ..+.++..+++|+.++.++++++.. +..++|++||... +....
T Consensus 228 ------~~~~~D~Vih~Aa~~~-------~~~~~~~~~~~Nv~gt~~ll~~a~~-----~~~~~v~iSS~~v--G~~~~~ 287 (508)
T 4f6l_B 228 ------LPENMDTIIHAGARTD-------HFGDDDEFEKVNVQGTVDVIRLAQQ-----HHARLIYVSTISV--GTYFDI 287 (508)
T ss_dssp ------CSSCCSEEEECCCC---------------CCHHHHHHHHHHHHHHHHT-----TTCEEEEEEESCT--TSEECT
T ss_pred ------CccCCCEEEECCceec-------CCCCHHHHhhhHHHHHHHHHHHHHh-----CCCcEEEeCChhh--ccCCcc
Confidence 3468999999999753 1245678899999999999998765 3469999999876 22100
Q ss_pred -ccccccccccC---CCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC
Q 022369 218 -EDMNVVSGRRK---YTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 218 -~~~~~~~~~~~---~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
..........+ ......|+.+|++.+.+.+.++. .|++++.+.||.|.++....
T Consensus 288 ~~~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-----~gi~~~ilRp~~v~G~~~~~ 345 (508)
T 4f6l_B 288 DTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAVN-----NGLDGRIVRVGNLTSPYNGR 345 (508)
T ss_dssp TCSCCEECTTCSCSSBCCCSHHHHHHHHHHHHHHHHHH-----TTCEEEEEEECCEESCSSSC
T ss_pred CCcCcccccccccccccCCCcHHHHHHHHHHHHHHHHH-----cCCCEEEEecceeccCCCCC
Confidence 00001111111 22567799999999988887542 48999999999998876543
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-17 Score=143.81 Aligned_cols=176 Identities=16% Similarity=0.012 Sum_probs=119.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+.++++|||||+|+||.+++++|+++|++|++++|+........+.+..... ...+.++.+|++
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~------------ 68 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLE----KPVLELEERDLS------------ 68 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEEC----SCGGGCCHHHHT------------
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhcc----CCCeeEEeCccc------------
Confidence 4568999999999999999999999999999999986521000000000000 013444455554
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
++|++||+||..... ...++.+..++ |+.++.++++++... +..+||++||...+..... ..
T Consensus 69 -----~~d~vi~~a~~~~~~----~~~~~~~~~~~-n~~~~~~ll~a~~~~----~v~~~v~~SS~~v~~~~~~----~~ 130 (321)
T 3vps_A 69 -----DVRLVYHLASHKSVP----RSFKQPLDYLD-NVDSGRHLLALCTSV----GVPKVVVGSTCEVYGQADT----LP 130 (321)
T ss_dssp -----TEEEEEECCCCCCHH----HHTTSTTTTHH-HHHHHHHHHHHHHHH----TCCEEEEEEEGGGGCSCSS----SS
T ss_pred -----cCCEEEECCccCChH----HHHhCHHHHHH-HHHHHHHHHHHHHHc----CCCeEEEecCHHHhCCCCC----CC
Confidence 799999999975421 11123344566 999999988887553 3469999999865543211 11
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCc-EEEEeeCCccccCccCC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGI-NVVCVSPGIVSTNVARD 276 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI-~v~~v~Pg~v~T~~~~~ 276 (298)
.....+..+...|+.+|++.+.+.+.++.+. |+ +++.+.|+.+.++....
T Consensus 131 ~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~ilRp~~v~G~~~~~ 181 (321)
T 3vps_A 131 TPEDSPLSPRSPYAASKVGLEMVAGAHQRAS----VAPEVGIVRFFNVYGPGERP 181 (321)
T ss_dssp BCTTSCCCCCSHHHHHHHHHHHHHHHHHHSS----SSCEEEEEEECEEECTTCCT
T ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHHHc----CCCceEEEEeccccCcCCCC
Confidence 2233344556789999999999999988765 78 99999999999887543
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=133.62 Aligned_cols=157 Identities=13% Similarity=0.006 Sum_probs=112.8
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcC-CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESG-AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G-~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||||+|+||.+++++|+++| ++|++++|++++... +.+.. ..+.++.+|++|++++.++++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~--~~l~~--------~~~~~~~~D~~d~~~l~~~~~--- 71 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAA--KELRL--------QGAEVVQGDQDDQVIMELALN--- 71 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHH--HHHHH--------TTCEEEECCTTCHHHHHHHHT---
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHH--HHHHH--------CCCEEEEecCCCHHHHHHHHh---
Confidence 4789999999999999999999999 999999999776432 22222 157788999999998877764
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
.+|++|||+|..... ..+.|+ ..++.+++.+++.+.++||++|+.. ..+..
T Consensus 72 ----~~d~vi~~a~~~~~~------------~~~~~~----~~~~~~~~aa~~~gv~~iv~~S~~~-~~~~~-------- 122 (299)
T 2wm3_A 72 ----GAYATFIVTNYWESC------------SQEQEV----KQGKLLADLARRLGLHYVVYSGLEN-IKKLT-------- 122 (299)
T ss_dssp ----TCSEEEECCCHHHHT------------CHHHHH----HHHHHHHHHHHHHTCSEEEECCCCC-HHHHT--------
T ss_pred ----cCCEEEEeCCCCccc------------cchHHH----HHHHHHHHHHHHcCCCEEEEEcCcc-ccccC--------
Confidence 589999999853110 122333 3455566666666678999966643 22210
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
. ......|..+|++++.+.+. .|++++.+.||.+.+++..
T Consensus 123 -~---~~~~~~y~~sK~~~e~~~~~--------~gi~~~ilrp~~~~~~~~~ 162 (299)
T 2wm3_A 123 -A---GRLAAAHFDGKGEVEEYFRD--------IGVPMTSVRLPCYFENLLS 162 (299)
T ss_dssp -T---TSCCCHHHHHHHHHHHHHHH--------HTCCEEEEECCEEGGGGGT
T ss_pred -C---CcccCchhhHHHHHHHHHHH--------CCCCEEEEeecHHhhhchh
Confidence 0 01235699999999887654 2799999999999887643
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=133.60 Aligned_cols=143 Identities=17% Similarity=0.115 Sum_probs=105.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHc--CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAES--GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~--G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+++||||+|+||.+++++|+++ |++|++++|++++.+.+. . ..+.++.+|++|++++.++++
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~----~--------~~~~~~~~D~~d~~~~~~~~~---- 64 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALA----A--------QGITVRQADYGDEAALTSALQ---- 64 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHH----H--------TTCEEEECCTTCHHHHHHHTT----
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhh----c--------CCCeEEEcCCCCHHHHHHHHh----
Confidence 3899999999999999999998 999999999987655432 1 157788999999998877654
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
++|++||+||... +.|+.++.++.++ +++.+.++||++||...+.
T Consensus 65 ---~~d~vi~~a~~~~----------------~~~~~~~~~l~~a----~~~~~~~~~v~~Ss~~~~~------------ 109 (286)
T 2zcu_A 65 ---GVEKLLLISSSEV----------------GQRAPQHRNVINA----AKAAGVKFIAYTSLLHADT------------ 109 (286)
T ss_dssp ---TCSEEEECC------------------------CHHHHHHHH----HHHHTCCEEEEEEETTTTT------------
T ss_pred ---CCCEEEEeCCCCc----------------hHHHHHHHHHHHH----HHHcCCCEEEEECCCCCCC------------
Confidence 5899999999521 0255555555554 4444567999999976431
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
....|+.+|.+.+.+.+. .|++++.+.||.+.+++.
T Consensus 110 ------~~~~y~~sK~~~e~~~~~--------~~~~~~ilrp~~~~~~~~ 145 (286)
T 2zcu_A 110 ------SPLGLADEHIETEKMLAD--------SGIVYTLLRNGWYSENYL 145 (286)
T ss_dssp ------CCSTTHHHHHHHHHHHHH--------HCSEEEEEEECCBHHHHH
T ss_pred ------CcchhHHHHHHHHHHHHH--------cCCCeEEEeChHHhhhhH
Confidence 113699999999887653 379999999999877654
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.2e-15 Score=134.06 Aligned_cols=151 Identities=20% Similarity=0.143 Sum_probs=110.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcC-CCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD-LLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~s~~~~v~~~~~~~ 142 (298)
.+++++||||+|+||.+++++|+++|++|++++|+.++.. .+.+... ..+.++.+| ++|++++.++++
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~--~~~l~~~-------~~v~~v~~D~l~d~~~l~~~~~-- 72 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI--AEELQAI-------PNVTLFQGPLLNNVPLMDTLFE-- 72 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH--HHHHHTS-------TTEEEEESCCTTCHHHHHHHHT--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhh--HHHHhhc-------CCcEEEECCccCCHHHHHHHHh--
Confidence 3578999999999999999999999999999999987652 1222210 257888999 999998887654
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCcc-ccCCCCcccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMH-YVGFVDTEDM 220 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~-~~~~~~~~~~ 220 (298)
.+|++|+|++... .+.|.. .+.+++.+++.+ .++||++||... ..+.
T Consensus 73 -----~~d~Vi~~a~~~~---------------~~~~~~-----~~~l~~aa~~~g~v~~~V~~SS~~~~~~~~------ 121 (352)
T 1xgk_A 73 -----GAHLAFINTTSQA---------------GDEIAI-----GKDLADAAKRAGTIQHYIYSSMPDHSLYGP------ 121 (352)
T ss_dssp -----TCSEEEECCCSTT---------------SCHHHH-----HHHHHHHHHHHSCCSEEEEEECCCGGGTSS------
T ss_pred -----cCCEEEEcCCCCC---------------cHHHHH-----HHHHHHHHHHcCCccEEEEeCCccccccCC------
Confidence 5899999987531 012333 355555556655 679999999752 2111
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
+....|+.+|++.+.+.+. .|++++.+.||.+.+..
T Consensus 122 ---------~~~~~y~~sK~~~E~~~~~--------~gi~~~ivrpg~~g~~~ 157 (352)
T 1xgk_A 122 ---------WPAVPMWAPKFTVENYVRQ--------LGLPSTFVYAGIYNNNF 157 (352)
T ss_dssp ---------CCCCTTTHHHHHHHHHHHT--------SSSCEEEEEECEEGGGC
T ss_pred ---------CCCccHHHHHHHHHHHHHH--------cCCCEEEEecceecCCc
Confidence 2335699999999887754 27999999999875544
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=126.04 Aligned_cols=152 Identities=13% Similarity=0.014 Sum_probs=111.0
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
+++||||| |.||.+++++|+++|++|++++|+.++.+.+.. ..+.++.+|++|.+
T Consensus 6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~------------~~~~~~~~D~~d~~------------ 60 (286)
T 3ius_A 6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA------------SGAEPLLWPGEEPS------------ 60 (286)
T ss_dssp CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH------------TTEEEEESSSSCCC------------
T ss_pred CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh------------CCCeEEEecccccc------------
Confidence 68999998 999999999999999999999999887665432 16889999999932
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhc--CCCCeEEEEcCCccccCCCCccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR--GSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~--~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+.++|++||+|+..... +. .++.++..+.+ .+..++|++||...+..... ...
T Consensus 61 ~~~~d~vi~~a~~~~~~-------~~--------------~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~----~~~ 115 (286)
T 3ius_A 61 LDGVTHLLISTAPDSGG-------DP--------------VLAALGDQIAARAAQFRWVGYLSTTAVYGDHDG----AWV 115 (286)
T ss_dssp CTTCCEEEECCCCBTTB-------CH--------------HHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTT----CEE
T ss_pred cCCCCEEEECCCccccc-------cH--------------HHHHHHHHHHhhcCCceEEEEeecceecCCCCC----CCc
Confidence 45799999999975321 01 12344444554 45579999999754433211 112
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
....+..+...|+.+|.+.+.+.+.+ .|++++.+.|+.+.++..
T Consensus 116 ~E~~~~~p~~~Y~~sK~~~E~~~~~~-------~~~~~~ilRp~~v~G~~~ 159 (286)
T 3ius_A 116 DETTPLTPTAARGRWRVMAEQQWQAV-------PNLPLHVFRLAGIYGPGR 159 (286)
T ss_dssp CTTSCCCCCSHHHHHHHHHHHHHHHS-------TTCCEEEEEECEEEBTTB
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhh-------cCCCEEEEeccceECCCc
Confidence 23334455678999999998887765 479999999999987753
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=126.87 Aligned_cols=151 Identities=13% Similarity=0.141 Sum_probs=104.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc-------hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL-------KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
+++++||||+|+||.+++++|+++|++|++++|+. ++.+.+ +++.. ..+.++.+|++|++++.+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~-~~l~~--------~~v~~v~~D~~d~~~l~~ 72 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELI-DNYQS--------LGVILLEGDINDHETLVK 72 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHH-HHHHH--------TTCEEEECCTTCHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHH-HHHHh--------CCCEEEEeCCCCHHHHHH
Confidence 46799999999999999999999999999999987 444433 23322 157889999999998877
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~ 216 (298)
+++ ++|++|||+|... +.+...++ ..+++.+ -+++| .|..+....
T Consensus 73 ~~~-------~~d~vi~~a~~~~-------------------~~~~~~l~----~aa~~~g~v~~~v--~S~~g~~~~-- 118 (307)
T 2gas_A 73 AIK-------QVDIVICAAGRLL-------------------IEDQVKII----KAIKEAGNVKKFF--PSEFGLDVD-- 118 (307)
T ss_dssp HHT-------TCSEEEECSSSSC-------------------GGGHHHHH----HHHHHHCCCSEEE--CSCCSSCTT--
T ss_pred HHh-------CCCEEEECCcccc-------------------cccHHHHH----HHHHhcCCceEEe--ecccccCcc--
Confidence 765 5999999999632 22333344 4445544 56887 343332110
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
. .....|....| .+|++++.+.+. .|++++.+.||++.+++.
T Consensus 119 ~-------~~~~~p~~~~y-~sK~~~e~~~~~--------~~i~~~~lrp~~~~~~~~ 160 (307)
T 2gas_A 119 R-------HDAVEPVRQVF-EEKASIRRVIEA--------EGVPYTYLCCHAFTGYFL 160 (307)
T ss_dssp S-------CCCCTTHHHHH-HHHHHHHHHHHH--------HTCCBEEEECCEETTTTG
T ss_pred c-------ccCCCcchhHH-HHHHHHHHHHHH--------cCCCeEEEEcceeecccc
Confidence 0 01112335678 999998876643 268999999999887653
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-15 Score=129.88 Aligned_cols=146 Identities=16% Similarity=0.149 Sum_probs=103.4
Q ss_pred EEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 67 TCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
++|||||+|+||.+++++|++. |++|++++|++++...+. ...+.++.+|++|++++.++++
T Consensus 2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~------------~~~v~~~~~D~~d~~~l~~~~~----- 64 (289)
T 3e48_A 2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDW------------RGKVSVRQLDYFNQESMVEAFK----- 64 (289)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGG------------BTTBEEEECCTTCHHHHHHHTT-----
T ss_pred EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhh------------hCCCEEEEcCCCCHHHHHHHHh-----
Confidence 4899999999999999999998 999999999987654321 1268899999999998877654
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
++|++|||||..... ..|+.+ ++.+++.+++.+.++||++||....
T Consensus 65 --~~d~vi~~a~~~~~~--------------~~~~~~----~~~l~~aa~~~gv~~iv~~Ss~~~~-------------- 110 (289)
T 3e48_A 65 --GMDTVVFIPSIIHPS--------------FKRIPE----VENLVYAAKQSGVAHIIFIGYYADQ-------------- 110 (289)
T ss_dssp --TCSEEEECCCCCCSH--------------HHHHHH----HHHHHHHHHHTTCCEEEEEEESCCS--------------
T ss_pred --CCCEEEEeCCCCccc--------------hhhHHH----HHHHHHHHHHcCCCEEEEEcccCCC--------------
Confidence 689999999964310 114333 4556666666667799999995421
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
....|..++... .+..++ ...|++++.+.||.+.+++.
T Consensus 111 -----~~~~~~~~~~~~-----~~e~~~-~~~g~~~~ilrp~~~~~~~~ 148 (289)
T 3e48_A 111 -----HNNPFHMSPYFG-----YASRLL-STSGIDYTYVRMAMYMDPLK 148 (289)
T ss_dssp -----TTCCSTTHHHHH-----HHHHHH-HHHCCEEEEEEECEESTTHH
T ss_pred -----CCCCCccchhHH-----HHHHHH-HHcCCCEEEEeccccccccH
Confidence 111233343221 222233 33589999999999988754
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.5e-14 Score=125.76 Aligned_cols=156 Identities=10% Similarity=0.027 Sum_probs=112.2
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc----hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL----KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+..++++||||+|+||.+++++|+++|++|++++|+. ++.+.+ +.+.. ..+.++.+|++|.+++.++
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~-~~l~~--------~~v~~~~~Dl~d~~~l~~~ 78 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIF-KALED--------KGAIIVYGLINEQEAMEKI 78 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHH-HHHHH--------TTCEEEECCTTCHHHHHHH
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHH-HHHHh--------CCcEEEEeecCCHHHHHHH
Confidence 3457899999999999999999999999999999987 333322 22222 2688999999999999888
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~ 217 (298)
+++. ++|++||++|.. |+.++.++++++.. .+ -.++|+ | ..+...
T Consensus 79 ~~~~-----~~d~Vi~~a~~~-------------------n~~~~~~l~~aa~~----~g~v~~~v~-S-~~g~~~---- 124 (346)
T 3i6i_A 79 LKEH-----EIDIVVSTVGGE-------------------SILDQIALVKAMKA----VGTIKRFLP-S-EFGHDV---- 124 (346)
T ss_dssp HHHT-----TCCEEEECCCGG-------------------GGGGHHHHHHHHHH----HCCCSEEEC-S-CCSSCT----
T ss_pred HhhC-----CCCEEEECCchh-------------------hHHHHHHHHHHHHH----cCCceEEee-c-ccCCCC----
Confidence 8763 799999999972 77777777776544 33 457775 3 332211
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
....+.++...|+.+|.+++.+.+. .|++++.+.||.+......
T Consensus 125 ------~e~~~~~p~~~y~~sK~~~e~~l~~--------~g~~~tivrpg~~~g~~~~ 168 (346)
T 3i6i_A 125 ------NRADPVEPGLNMYREKRRVRQLVEE--------SGIPFTYICCNSIASWPYY 168 (346)
T ss_dssp ------TTCCCCTTHHHHHHHHHHHHHHHHH--------TTCCBEEEECCEESSCCCS
T ss_pred ------CccCcCCCcchHHHHHHHHHHHHHH--------cCCCEEEEEecccccccCc
Confidence 1122335567799999998776654 3789999999998776543
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-14 Score=133.90 Aligned_cols=166 Identities=19% Similarity=0.184 Sum_probs=116.3
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
++++|||||+|+||.+++++|+++|++|++++|+..+.+ .+.+|+.+.. .+
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~--------------------~v~~d~~~~~---------~~ 197 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG--------------------KRFWDPLNPA---------SD 197 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTT--------------------CEECCTTSCC---------TT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc--------------------ceeecccchh---------HH
Confidence 578999999999999999999999999999999866421 1567776431 23
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
.+.++|++||+||..... ..+.+..+..+++|+.++.++++++. .+.+.++||++||...+.... ....+.
T Consensus 198 ~l~~~D~Vih~A~~~~~~---~~~~~~~~~~~~~Nv~gt~~ll~a~a---~~~~~~r~V~~SS~~vyg~~~---~~~~~~ 268 (516)
T 3oh8_A 198 LLDGADVLVHLAGEPIFG---RFNDSHKEAIRESRVLPTKFLAELVA---ESTQCTTMISASAVGFYGHDR---GDEILT 268 (516)
T ss_dssp TTTTCSEEEECCCC--------CCGGGHHHHHHHTHHHHHHHHHHHH---HCSSCCEEEEEEEGGGGCSEE---EEEEEC
T ss_pred hcCCCCEEEECCCCcccc---ccchhHHHHHHHHHHHHHHHHHHHHH---hcCCCCEEEEeCcceEecCCC---CCCccC
Confidence 345899999999975432 44667788999999999999999743 334557999999976543110 011112
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
...+. +...|+.+|...+.+.+. . ...|++++.+.||.|.++..
T Consensus 269 E~~~~-~~~~y~~~~~~~E~~~~~----~-~~~gi~~~ilRp~~v~Gp~~ 312 (516)
T 3oh8_A 269 EESES-GDDFLAEVCRDWEHATAP----A-SDAGKRVAFIRTGVALSGRG 312 (516)
T ss_dssp TTSCC-CSSHHHHHHHHHHHTTHH----H-HHTTCEEEEEEECEEEBTTB
T ss_pred CCCCC-CcChHHHHHHHHHHHHHH----H-HhCCCCEEEEEeeEEECCCC
Confidence 22222 455688888776654332 2 33589999999999998763
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.6e-13 Score=122.65 Aligned_cols=173 Identities=13% Similarity=0.026 Sum_probs=117.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcC-----CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESG-----AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G-----~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
++++|||||+|+||.+++++|+++| ++|++++|+..... . . ..++.++.+|++|.+++.+++
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-----~----~----~~~~~~~~~Dl~d~~~~~~~~ 67 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-----H----E----DNPINYVQCDISDPDDSQAKL 67 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-----C----C----SSCCEEEECCTTSHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-----c----c----cCceEEEEeecCCHHHHHHHH
Confidence 4689999999999999999999999 99999999866432 0 0 136788999999999887766
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEE-------EEcCCcccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRII-------NVNSVMHYV 212 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv-------~isS~~~~~ 212 (298)
+. .+++|++||+||... ++.+..+++|+.++.++++++.+... +-.++| ++||...+.
T Consensus 68 ~~----~~~~d~vih~a~~~~---------~~~~~~~~~n~~~~~~l~~a~~~~~~--~~~~~v~~~g~~i~~Ss~~vyg 132 (364)
T 2v6g_A 68 SP----LTDVTHVFYVTWANR---------STEQENCEANSKMFRNVLDAVIPNCP--NLKHISLQTGRKHYMGPFESYG 132 (364)
T ss_dssp TT----CTTCCEEEECCCCCC---------SSHHHHHHHHHHHHHHHHHHHTTTCT--TCCEEEEECCTHHHHCCGGGTT
T ss_pred hc----CCCCCEEEECCCCCc---------chHHHHHHHhHHHHHHHHHHHHHhcc--ccceEEeccCceEEEechhhcc
Confidence 53 234999999999742 34678899999999999999877521 234666 788865432
Q ss_pred CCCCcccccccccccC-CCCcccchhhHHHHHHHHHHHHHHcCCCCC-cEEEEeeCCccccCccC
Q 022369 213 GFVDTEDMNVVSGRRK-YTSLMGYSGSKLAQIKFSSILQKRLPAESG-INVVCVSPGIVSTNVAR 275 (298)
Q Consensus 213 ~~~~~~~~~~~~~~~~-~~~~~~Y~asKaa~~~l~~~l~~e~~~~~g-I~v~~v~Pg~v~T~~~~ 275 (298)
.... .. .......+ .+....|.+ .+.+.+.++ ...| +++..+.|+.|..+...
T Consensus 133 ~~~~-~~-~~~~E~~~~~~~~~~y~~----~E~~~~~~~----~~~~~~~~~ilRp~~v~G~~~~ 187 (364)
T 2v6g_A 133 KIES-HD-PPYTEDLPRLKYMNFYYD----LEDIMLEEV----EKKEGLTWSVHRPGNIFGFSPY 187 (364)
T ss_dssp TSCC-CC-SSBCTTSCCCSSCCHHHH----HHHHHHHHH----TTSTTCEEEEEEESSEECCCTT
T ss_pred cccc-CC-CCCCccccCCccchhhHH----HHHHHHHHh----hcCCCceEEEECCCceeCCCCC
Confidence 2100 00 00111111 122345622 233333332 2345 99999999999887654
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-13 Score=125.90 Aligned_cols=136 Identities=14% Similarity=0.092 Sum_probs=109.4
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
++|||||+|+||++++++|+++|+ +|+.++|+ +|++++.++++
T Consensus 2 ~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~-------------------------------~d~~~l~~~~~----- 45 (369)
T 3st7_A 2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ-------------------------------TKEEELESALL----- 45 (369)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT-------------------------------CCHHHHHHHHH-----
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC-------------------------------CCHHHHHHHhc-----
Confidence 599999999999999999999998 77766554 57777777766
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCC-CeEEEEcCCccccCCCCcccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSP-SRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~-g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
++|++||+||.... ++.+..+++|+.++.++++++.. .+. .++|++||...+.
T Consensus 46 --~~d~Vih~a~~~~~--------~~~~~~~~~n~~~~~~l~~a~~~----~~~~~~~v~~Ss~~~~~------------ 99 (369)
T 3st7_A 46 --KADFIVHLAGVNRP--------EHDKEFSLGNVSYLDHVLDILTR----NTKKPAILLSSSIQATQ------------ 99 (369)
T ss_dssp --HCSEEEECCCSBCT--------TCSTTCSSSCCBHHHHHHHHHTT----CSSCCEEEEEEEGGGGS------------
T ss_pred --cCCEEEECCcCCCC--------CCHHHHHHHHHHHHHHHHHHHHH----hCCCCeEEEeCchhhcC------------
Confidence 38999999997542 34556788999999999887643 333 3899999975322
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
...|+.+|++.+.+.+.++.+. |+++..+.|+.+..+..+
T Consensus 100 -------~~~Y~~sK~~~E~~~~~~~~~~----g~~~~i~R~~~v~G~~~~ 139 (369)
T 3st7_A 100 -------DNPYGESKLQGEQLLREYAEEY----GNTVYIYRWPNLFGKWCK 139 (369)
T ss_dssp -------CSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEECTTCC
T ss_pred -------CCCchHHHHHHHHHHHHHHHHh----CCCEEEEECCceeCCCCC
Confidence 4569999999999999998876 689999999999887643
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=122.25 Aligned_cols=149 Identities=11% Similarity=0.062 Sum_probs=101.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc------hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL------KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
.++++||||+|+||.+++++|+++|++|++++|+. ++.+. .+++.. ..+.++.+|++|++++.++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~-l~~~~~--------~~v~~v~~D~~d~~~l~~a 74 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQL-REEFRS--------MGVTIIEGEMEEHEKMVSV 74 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHH-HHHHHH--------TTCEEEECCTTCHHHHHHH
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHH-HHHhhc--------CCcEEEEecCCCHHHHHHH
Confidence 36799999999999999999999999999999986 22222 222222 2578899999999988877
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~ 217 (298)
++ .+|++|||+|... +.+ ++.+++.+++.+ -++|| .|..+.... .
T Consensus 75 ~~-------~~d~vi~~a~~~~-------------------~~~----~~~l~~aa~~~g~v~~~v--~S~~g~~~~--~ 120 (321)
T 3c1o_A 75 LK-------QVDIVISALPFPM-------------------ISS----QIHIINAIKAAGNIKRFL--PSDFGCEED--R 120 (321)
T ss_dssp HT-------TCSEEEECCCGGG-------------------SGG----GHHHHHHHHHHCCCCEEE--CSCCSSCGG--G
T ss_pred Hc-------CCCEEEECCCccc-------------------hhh----HHHHHHHHHHhCCccEEe--ccccccCcc--c
Confidence 65 4899999999632 222 344445555555 56887 343332110 0
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
.....|....| .+|++++.+.+. . |++++.+.||.+.++
T Consensus 121 -------~~~~~p~~~~y-~sK~~~e~~~~~----~----~~~~~~lrp~~~~~~ 159 (321)
T 3c1o_A 121 -------IKPLPPFESVL-EKKRIIRRAIEA----A----ALPYTYVSANCFGAY 159 (321)
T ss_dssp -------CCCCHHHHHHH-HHHHHHHHHHHH----H----TCCBEEEECCEEHHH
T ss_pred -------cccCCCcchHH-HHHHHHHHHHHH----c----CCCeEEEEeceeccc
Confidence 00111224579 999998877653 2 578888899988654
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-14 Score=128.40 Aligned_cols=109 Identities=18% Similarity=0.199 Sum_probs=88.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++++.|+++|++|++++|+.++++++.+++.... .+.++.+|++++++++++++
T Consensus 116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~-------~~~~~~~D~~~~~~~~~~~~- 187 (287)
T 1lu9_A 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF-------KVNVTAAETADDASRAEAVK- 187 (287)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH-------TCCCEEEECCSHHHHHHHTT-
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEecCCCHHHHHHHHH-
Confidence 4678999999999999999999999999999999999999988888775531 35567899999998776654
Q ss_pred HhcccCCccEEEEccCCCC-CCCCCccCh-hhHHHHHhhhchHHH
Q 022369 142 WNGRLGPLHVLINNAGIFS-IGEPQKFSK-DGYEEHMQVNHLAPA 184 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~-~~~~~~~~~-~~~~~~~~vN~~~~~ 184 (298)
.+|+||||+|+.. ..+..+.+. ++++..+++|+.+++
T Consensus 188 ------~~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~ 226 (287)
T 1lu9_A 188 ------GAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPL 226 (287)
T ss_dssp ------TCSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSC
T ss_pred ------hCCEEEECCCccccCCChhHcCchHHHHHHHHhhhhhhH
Confidence 4799999998653 223334444 677789999999887
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-13 Score=121.32 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=100.4
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
++++||||+|+||.+++++|+++|++|++++|+.+...+..+++.. ..+.++.+|++|++++.++++
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~--------~~v~~v~~Dl~d~~~l~~a~~----- 78 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQS--------LGAIIVKGELDEHEKLVELMK----- 78 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHH--------TTCEEEECCTTCHHHHHHHHT-----
T ss_pred CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhc--------CCCEEEEecCCCHHHHHHHHc-----
Confidence 5799999999999999999999999999999987522222222322 157889999999998887765
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
.+|++||+++... +.+ ++.+++.+++.+ .++||+ |..+.... .
T Consensus 79 --~~d~vi~~a~~~~-------------------~~~----~~~l~~aa~~~g~v~~~v~--S~~g~~~~--~------- 122 (318)
T 2r6j_A 79 --KVDVVISALAFPQ-------------------ILD----QFKILEAIKVAGNIKRFLP--SDFGVEED--R------- 122 (318)
T ss_dssp --TCSEEEECCCGGG-------------------STT----HHHHHHHHHHHCCCCEEEC--SCCSSCTT--T-------
T ss_pred --CCCEEEECCchhh-------------------hHH----HHHHHHHHHhcCCCCEEEe--eccccCcc--c-------
Confidence 4899999998631 222 244445555554 568874 33321110 0
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
.....|....| .+|++++.+.+. .|++++.+.||.+...
T Consensus 123 ~~~~~p~~~~y-~sK~~~e~~~~~--------~~~~~~~lr~~~~~~~ 161 (318)
T 2r6j_A 123 INALPPFEALI-ERKRMIRRAIEE--------ANIPYTYVSANCFASY 161 (318)
T ss_dssp CCCCHHHHHHH-HHHHHHHHHHHH--------TTCCBEEEECCEEHHH
T ss_pred ccCCCCcchhH-HHHHHHHHHHHh--------cCCCeEEEEcceehhh
Confidence 00111223568 999988876643 3688888999887543
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-13 Score=119.97 Aligned_cols=154 Identities=16% Similarity=0.115 Sum_probs=101.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHH--HHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAA--NELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.++++||||+|+||.+++++|+++|++|++++|+.... .+..+.+... .. ..+.++.+|++|++++.++++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l-~~----~~v~~v~~D~~d~~~l~~~~~-- 76 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESF-KA----SGANIVHGSIDDHASLVEAVK-- 76 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHH-HT----TTCEEECCCTTCHHHHHHHHH--
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHH-Hh----CCCEEEEeccCCHHHHHHHHc--
Confidence 36799999999999999999999999999999985322 1111112111 11 257889999999998887765
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
++|++||++|... +.+. +.+++.+++.+ -+++|+ |..+.... .
T Consensus 77 -----~~d~vi~~a~~~~-------------------~~~~----~~l~~aa~~~g~v~~~v~--S~~g~~~~--~---- 120 (308)
T 1qyc_A 77 -----NVDVVISTVGSLQ-------------------IESQ----VNIIKAIKEVGTVKRFFP--SEFGNDVD--N---- 120 (308)
T ss_dssp -----TCSEEEECCCGGG-------------------SGGG----HHHHHHHHHHCCCSEEEC--SCCSSCTT--S----
T ss_pred -----CCCEEEECCcchh-------------------hhhH----HHHHHHHHhcCCCceEee--cccccCcc--c----
Confidence 4899999998631 2222 33444455544 568873 33321110 0
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
.....|....| .+|++++.+.+. .|++++.+.||.+.+.+
T Consensus 121 ---~~~~~p~~~~y-~sK~~~e~~~~~--------~~~~~~~~r~~~~~~~~ 160 (308)
T 1qyc_A 121 ---VHAVEPAKSVF-EVKAKVRRAIEA--------EGIPYTYVSSNCFAGYF 160 (308)
T ss_dssp ---CCCCTTHHHHH-HHHHHHHHHHHH--------HTCCBEEEECCEEHHHH
T ss_pred ---cccCCcchhHH-HHHHHHHHHHHh--------cCCCeEEEEeceecccc
Confidence 01111334568 999988876653 26788889999886543
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.46 E-value=8.3e-13 Score=116.92 Aligned_cols=155 Identities=15% Similarity=0.106 Sum_probs=104.8
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc-----hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL-----KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++++||||+|+||.+++++|+++|++|++++|+. ++.+.+ +.+.. ..+.++.+|++|++++.+++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~-~~~~~--------~~~~~~~~D~~d~~~l~~~~ 74 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQML-LYFKQ--------LGAKLIEASLDDHQRLVDAL 74 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHH-HHHHT--------TTCEEECCCSSCHHHHHHHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHH-HHHHh--------CCeEEEeCCCCCHHHHHHHH
Confidence 36799999999999999999999999999999984 333222 22211 25788999999999887776
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~ 218 (298)
+ ++|++||++|..... .|+.++..+.++ +++.+ -++||+ |..+.... .
T Consensus 75 ~-------~~d~vi~~a~~~~~~---------------~~~~~~~~l~~a----a~~~g~v~~~v~--S~~g~~~~--~- 123 (313)
T 1qyd_A 75 K-------QVDVVISALAGGVLS---------------HHILEQLKLVEA----IKEAGNIKRFLP--SEFGMDPD--I- 123 (313)
T ss_dssp T-------TCSEEEECCCCSSSS---------------TTTTTHHHHHHH----HHHSCCCSEEEC--SCCSSCTT--S-
T ss_pred h-------CCCEEEECCccccch---------------hhHHHHHHHHHH----HHhcCCCceEEe--cCCcCCcc--c-
Confidence 4 589999999975321 255565555554 44444 568874 43332110 0
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
. .....|....| .+|++++.+.+ + .|++++.+.||++.+++
T Consensus 124 -~----~~~~~p~~~~y-~sK~~~e~~~~----~----~g~~~~ilrp~~~~~~~ 164 (313)
T 1qyd_A 124 -M----EHALQPGSITF-IDKRKVRRAIE----A----ASIPYTYVSSNMFAGYF 164 (313)
T ss_dssp -C----CCCCSSTTHHH-HHHHHHHHHHH----H----TTCCBCEEECCEEHHHH
T ss_pred -c----ccCCCCCcchH-HHHHHHHHHHH----h----cCCCeEEEEeceecccc
Confidence 0 01112335568 99999887654 2 36888899999886543
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-13 Score=114.07 Aligned_cols=116 Identities=12% Similarity=0.140 Sum_probs=76.5
Q ss_pred CCCCCCEEEEeCC----------------CCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEE
Q 022369 61 PPVNDLTCIVTGS----------------TSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124 (298)
Q Consensus 61 ~~~~~k~vlITGa----------------s~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (298)
.+++||+|||||| |+|||.++|++|+++|++|++++++.. ++ .+ ..+
T Consensus 4 ~~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~---------~~-----~g~-- 66 (226)
T 1u7z_A 4 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP---------TP-----PFV-- 66 (226)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC---------CC-----TTE--
T ss_pred cCCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc---------cC-----CCC--
Confidence 3688999999999 689999999999999999999988742 11 01 112
Q ss_pred EEcCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHH--HhhhchHHHHHHHHHhhhhhcC
Q 022369 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEH--MQVNHLAPALLSILLFPSLIRG 197 (298)
Q Consensus 125 ~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~--~~vN~~~~~~l~~~~lp~m~~~ 197 (298)
-.+|+++.++ +.+.+.+.+|++|++|||||+....+. +.+.+.+.+. -+.|+.-.+..+.-+++.+.+.
T Consensus 67 ~~~dv~~~~~---~~~~v~~~~~~~Dili~~Aav~d~~p~-~~~~~KIkk~~~~~~~l~l~L~~~pdIL~~l~~~ 137 (226)
T 1u7z_A 67 KRVDVMTALE---MEAAVNASVQQQNIFIGCAAVADYRAA-TVAPEKIKKQATQGDELTIKMVKNPDIVAGVAAL 137 (226)
T ss_dssp EEEECCSHHH---HHHHHHHHGGGCSEEEECCBCCSEEES-SCCSSCC-------CEEEEEEEECCCHHHHHHHC
T ss_pred eEEccCcHHH---HHHHHHHhcCCCCEEEECCcccCCCCc-cCChHHhccccccCCceEEEEeecHHHHHHHHhh
Confidence 2468877554 556666778899999999998754443 2333444441 1224433444455566666653
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.18 E-value=7.4e-10 Score=97.36 Aligned_cols=163 Identities=18% Similarity=0.149 Sum_probs=105.9
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
.+|||||+|-||.+++++|.++|++|+++.|+++. ..+. .| .. ..+.+
T Consensus 2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~------------------~~~~---~~-----~~------~~~~l 49 (298)
T 4b4o_A 2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP------------------GRIT---WD-----EL------AASGL 49 (298)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT------------------TEEE---HH-----HH------HHHCC
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc------------------Ceee---cc-----hh------hHhhc
Confidence 48999999999999999999999999999998532 0111 11 11 11234
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
.++|.+||.||.....+....+.+..+..++.|+.++-.+.+++... +.+...+|+.||...+....+ ......
T Consensus 50 ~~~d~vihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~--~~~~~~~i~~Ss~~vyg~~~~----~~~~E~ 123 (298)
T 4b4o_A 50 PSCDAAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKA--PQPPKAWVLVTGVAYYQPSLT----AEYDED 123 (298)
T ss_dssp CSCSEEEECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHC--SSCCSEEEEEEEGGGSCCCSS----CCBCTT
T ss_pred cCCCEEEEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHh--CCCceEEEEEeeeeeecCCCC----Cccccc
Confidence 57999999998755445555677777888999998888777765332 223346777787655433211 111222
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
.+......|+..+...+. +... ...++++..+.||.|..+-
T Consensus 124 ~p~~~~~~~~~~~~~~e~-----~~~~-~~~~~~~~~~r~~~v~g~~ 164 (298)
T 4b4o_A 124 SPGGDFDFFSNLVTKWEA-----AARL-PGDSTRQVVVRSGVVLGRG 164 (298)
T ss_dssp CCCSCSSHHHHHHHHHHH-----HHCC-SSSSSEEEEEEECEEECTT
T ss_pred CCccccchhHHHHHHHHH-----HHHh-hccCCceeeeeeeeEEcCC
Confidence 333333445544443332 1223 5678999999999998775
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-13 Score=126.97 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=77.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHh--hcCCCCCccEEEEEc---CCCCHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEE--WSGKGLPLNIEAMEL---DLLSLDSVV 136 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---D~s~~~~v~ 136 (298)
.+.||+++|||++ +||+++|+.|+..|++|+++++++.+.++........ .........+.+... |+-+.+
T Consensus 262 ~L~GKtVvVtGaG-gIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~atG~~~vl~~e--- 337 (488)
T 3ond_A 262 MIAGKVAVVAGYG-DVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNKDIIMLD--- 337 (488)
T ss_dssp CCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECSSCSCSBCHH---
T ss_pred cccCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCCCChhhhhHH---
Confidence 5789999999998 9999999999999999999999987766554321000 000000012222111 111111
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHH-------HhhhchHHHHHH-HHHhhhhhcCCCCeEEEEcCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEH-------MQVNHLAPALLS-ILLFPSLIRGSPSRIINVNSV 208 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~-------~~vN~~~~~~l~-~~~lp~m~~~~~g~Iv~isS~ 208 (298)
. .+. -+.+.+|+|+|.. ..+.+.+.++.. +..|+.+.+... +..++.|.+ |+|||+||.
T Consensus 338 -~----l~~-mk~gaiVvNaG~~----~~Ei~~~~l~~~~~v~~~~i~~~v~~~~~~~fg~aI~lLae---GRIVNlsS~ 404 (488)
T 3ond_A 338 -H----MKK-MKNNAIVCNIGHF----DNEIDMLGLETHPGVKRITIKPQTDRWVFPETNTGIIILAE---GRLMNLGCA 404 (488)
T ss_dssp -H----HTT-SCTTEEEEESSST----TTTBTHHHHHTSTTCEEEEEETTEEEEECTTTCCEEEEEGG---GSCHHHHHS
T ss_pred -H----HHh-cCCCeEEEEcCCC----CcccchHHHHHhhhhheEEeeeeEEEEEecchHHHHHHHcC---CcEEEEecC
Confidence 1 111 1456778888864 234555666554 334444433333 344444433 899999998
Q ss_pred ccc
Q 022369 209 MHY 211 (298)
Q Consensus 209 ~~~ 211 (298)
.|+
T Consensus 405 ~G~ 407 (488)
T 3ond_A 405 TGH 407 (488)
T ss_dssp CCS
T ss_pred ccc
Confidence 654
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-10 Score=104.18 Aligned_cols=169 Identities=12% Similarity=0.034 Sum_probs=106.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-------EEEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-------HVVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-------~Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
..++||||+|.||.+++..|+++|. .|++++++. ++++....++... .+.++ .|+.+.++..
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~--------~~~~~-~di~~~~~~~ 75 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDC--------AFPLL-AGLEATDDPK 75 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTT--------TCTTE-EEEEEESCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcc--------ccccc-CCeEeccChH
Confidence 4699999999999999999999986 899999875 3333333333221 01112 3555544333
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
+.+ .+.|++||.||.... + . +.-++.+++|+.++..+.+++..+- ...++++++|+.........
T Consensus 76 ~a~-------~~~D~Vih~Ag~~~~-~--~---~~~~~~~~~Nv~~t~~l~~a~~~~~--~~~~~vvv~snp~~~~~~~~ 140 (327)
T 1y7t_A 76 VAF-------KDADYALLVGAAPRK-A--G---MERRDLLQVNGKIFTEQGRALAEVA--KKDVKVLVVGNPANTNALIA 140 (327)
T ss_dssp HHT-------TTCSEEEECCCCCCC-T--T---CCHHHHHHHHHHHHHHHHHHHHHHS--CTTCEEEECSSSHHHHHHHH
T ss_pred HHh-------CCCCEEEECCCcCCC-C--C---CCHHHHHHHHHHHHHHHHHHHHhhc--CCCeEEEEeCCchhhhHHHH
Confidence 332 268999999998542 1 1 2345678999999999988876531 12358888887542111000
Q ss_pred ccccccccccc-CCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcc
Q 022369 217 TEDMNVVSGRR-KYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIV 269 (298)
Q Consensus 217 ~~~~~~~~~~~-~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v 269 (298)
.... ++++...|+.||...+.+...++.++ |+++..+.|..|
T Consensus 141 -------~~~~~~~~p~~~yg~tkl~~er~~~~~a~~~----g~~~~~vr~~~V 183 (327)
T 1y7t_A 141 -------YKNAPGLNPRNFTAMTRLDHNRAKAQLAKKT----GTGVDRIRRMTV 183 (327)
T ss_dssp -------HHTCTTSCGGGEEECCHHHHHHHHHHHHHHH----TCCGGGEECCEE
T ss_pred -------HHHcCCCChhheeccchHHHHHHHHHHHHHh----CcChhheeeeEE
Confidence 0011 24556679999999888888888776 344444444443
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.2e-11 Score=99.64 Aligned_cols=92 Identities=15% Similarity=0.187 Sum_probs=64.3
Q ss_pred CCCEEEEeCC----------------CCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEc
Q 022369 64 NDLTCIVTGS----------------TSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMEL 127 (298)
Q Consensus 64 ~~k~vlITGa----------------s~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (298)
+||+|||||| ||++|.++|++|+++|++|++++|+... .. . ....+.. .
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~-~~---------~---~~~~~~~--~ 66 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRAL-KP---------E---PHPNLSI--R 66 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSC-CC---------C---CCTTEEE--E
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccc-cc---------c---CCCCeEE--E
Confidence 5899999999 6779999999999999999999997431 10 0 0012333 3
Q ss_pred CCCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHH
Q 022369 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYE 173 (298)
Q Consensus 128 D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~ 173 (298)
|+. +++++.+.+.+.++++|++||||++....+....+.+.+.
T Consensus 67 ~v~---s~~em~~~v~~~~~~~Dili~aAAvsD~~p~~~~~~e~~~ 109 (232)
T 2gk4_A 67 EIT---NTKDLLIEMQERVQDYQVLIHSMAVSDYTPVYMTGLEEVQ 109 (232)
T ss_dssp ECC---SHHHHHHHHHHHGGGCSEEEECSBCCSEEEEEEEEHHHHH
T ss_pred EHh---HHHHHHHHHHHhcCCCCEEEEcCccccccchhhcchhhhh
Confidence 444 5556666666777899999999998765554444444444
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.7e-09 Score=78.35 Aligned_cols=74 Identities=22% Similarity=0.245 Sum_probs=61.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcC-CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESG-AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G-~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++.++|+|+ |++|.++++.|++.| ++|++++|++++++... . ..+..+.+|+++.+++.++++
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~--------~~~~~~~~d~~~~~~~~~~~~--- 68 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R--------MGVATKQVDAKDEAGLAKALG--- 68 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T--------TTCEEEECCTTCHHHHHHHTT---
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h--------CCCcEEEecCCCHHHHHHHHc---
Confidence 578999999 999999999999999 89999999988777653 1 146678899999987776643
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
++|++|++++.
T Consensus 69 ----~~d~vi~~~~~ 79 (118)
T 3ic5_A 69 ----GFDAVISAAPF 79 (118)
T ss_dssp ----TCSEEEECSCG
T ss_pred ----CCCEEEECCCc
Confidence 68999999963
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=9.4e-10 Score=104.47 Aligned_cols=99 Identities=23% Similarity=0.206 Sum_probs=68.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|+++||||+ |+|+++|+.|++.|++|++++|+.++++++.+++. .++. . +.+ +
T Consensus 361 ~l~~k~vlV~GaG-Gig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~---------~~~~--~--~~d---l------ 417 (523)
T 2o7s_A 361 PLASKTVVVIGAG-GAGKALAYGAKEKGAKVVIANRTYERALELAEAIG---------GKAL--S--LTD---L------ 417 (523)
T ss_dssp -----CEEEECCS-HHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTT---------C-CE--E--TTT---T------
T ss_pred ccCCCEEEEECCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC---------Ccee--e--HHH---h------
Confidence 4678999999995 99999999999999999999999998888766541 1221 1 111 1
Q ss_pred Hhc-ccCCccEEEEccCCCCC-----CCCCccChhhHHHHHhhhchHHH
Q 022369 142 WNG-RLGPLHVLINNAGIFSI-----GEPQKFSKDGYEEHMQVNHLAPA 184 (298)
Q Consensus 142 ~~~-~~g~idilVnnag~~~~-----~~~~~~~~~~~~~~~~vN~~~~~ 184 (298)
.+ ..+.+|+||||+|+... .++.+.+.+.++.++++|+.+..
T Consensus 418 -~~~~~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~ 465 (523)
T 2o7s_A 418 -DNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRI 465 (523)
T ss_dssp -TTC--CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSSS
T ss_pred -hhccccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCcc
Confidence 11 11358999999997532 34556677888899999998753
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.6e-09 Score=85.30 Aligned_cols=77 Identities=14% Similarity=0.141 Sum_probs=62.5
Q ss_pred chHHHHHHHHHHcCCEEEEEEcCchHHHH---HHHHHHHhhcCCCCCccEEEEEcCCCCH--HHHHHHHHHHhcccCCcc
Q 022369 76 GIGREIARQLAESGAHVVMAVRNLKAANE---LIQKWQEEWSGKGLPLNIEAMELDLLSL--DSVVRFSEAWNGRLGPLH 150 (298)
Q Consensus 76 GIG~~~a~~la~~G~~Vil~~r~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~s~~--~~v~~~~~~~~~~~g~id 150 (298)
-++.+.++.|++.|++|++..|+.+.... ..+.+.+. |.+...+++|++++ ++++++++.+.+.+|+ |
T Consensus 27 ~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~------G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-d 99 (157)
T 3gxh_A 27 LPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQA------GMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-D 99 (157)
T ss_dssp CCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHT------TCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-C
T ss_pred CCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHc------CCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-C
Confidence 47899999999999999999887654321 23333332 34788899999999 9999999999998999 9
Q ss_pred EEEEccCCC
Q 022369 151 VLINNAGIF 159 (298)
Q Consensus 151 ilVnnag~~ 159 (298)
+||||||+.
T Consensus 100 VLVnnAgg~ 108 (157)
T 3gxh_A 100 VLVHCLANY 108 (157)
T ss_dssp EEEECSBSH
T ss_pred EEEECCCCC
Confidence 999999973
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.8e-08 Score=91.37 Aligned_cols=82 Identities=21% Similarity=0.306 Sum_probs=70.8
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcC---CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESG---AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G---~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+.++|+|| +|||+++|+.|+++| .+|++++|+.++++++.+++.... +.++..+.+|++|.+++++++++.
T Consensus 2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~-----~~~~~~~~~D~~d~~~l~~~l~~~ 75 (405)
T 4ina_A 2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKG-----YGEIDITTVDADSIEELVALINEV 75 (405)
T ss_dssp CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTT-----CCCCEEEECCTTCHHHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhc-----CCceEEEEecCCCHHHHHHHHHhh
Confidence 46899999 899999999999998 499999999999999888876531 125788999999999999998876
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
++|++|||+|.
T Consensus 76 -----~~DvVin~ag~ 86 (405)
T 4ina_A 76 -----KPQIVLNIALP 86 (405)
T ss_dssp -----CCSEEEECSCG
T ss_pred -----CCCEEEECCCc
Confidence 69999999985
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.75 E-value=4.6e-09 Score=92.16 Aligned_cols=81 Identities=23% Similarity=0.381 Sum_probs=61.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|+++|||++ |+|+++|+.|++.| +|++++|+.++++++.+++...... .. .+.+|+++.
T Consensus 125 ~l~~k~vlV~GaG-giG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~-----~~-~~~~d~~~~--------- 187 (287)
T 1nvt_A 125 RVKDKNIVIYGAG-GAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNK-----KF-GEEVKFSGL--------- 187 (287)
T ss_dssp CCCSCEEEEECCS-HHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTC-----CH-HHHEEEECT---------
T ss_pred CcCCCEEEEECch-HHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhccc-----cc-ceeEEEeeH---------
Confidence 4678999999997 99999999999999 9999999999998888777542110 00 112344331
Q ss_pred HhcccCCccEEEEccCCCC
Q 022369 142 WNGRLGPLHVLINNAGIFS 160 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~ 160 (298)
.+.++++|+||||+|...
T Consensus 188 -~~~~~~~DilVn~ag~~~ 205 (287)
T 1nvt_A 188 -DVDLDGVDIIINATPIGM 205 (287)
T ss_dssp -TCCCTTCCEEEECSCTTC
T ss_pred -HHhhCCCCEEEECCCCCC
Confidence 455689999999999764
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-08 Score=83.32 Aligned_cols=103 Identities=16% Similarity=0.088 Sum_probs=71.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|++++||||++|||.++++.+...|++|++++|++++.+.+. +. +... .+|.++.+..+.+.+...
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~----~~------g~~~---~~d~~~~~~~~~~~~~~~ 104 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS----RL------GVEY---VGDSRSVDFADEILELTD 104 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH----TT------CCSE---EEETTCSTHHHHHHHHTT
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH----Hc------CCCE---EeeCCcHHHHHHHHHHhC
Confidence 4789999999999999999999999999999999987665432 11 1121 247776654444443322
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM 209 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~ 209 (298)
. +.+|++|||+|. +. .+.+++.|+. +|++|++++..
T Consensus 105 ~--~~~D~vi~~~g~-----------~~---------------~~~~~~~l~~--~G~~v~~g~~~ 140 (198)
T 1pqw_A 105 G--YGVDVVLNSLAG-----------EA---------------IQRGVQILAP--GGRFIELGKKD 140 (198)
T ss_dssp T--CCEEEEEECCCT-----------HH---------------HHHHHHTEEE--EEEEEECSCGG
T ss_pred C--CCCeEEEECCch-----------HH---------------HHHHHHHhcc--CCEEEEEcCCC
Confidence 1 369999999972 11 2344555554 57999998754
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-08 Score=90.74 Aligned_cols=109 Identities=17% Similarity=0.151 Sum_probs=76.3
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
..+.+++++|+|+ |+||+++|+.+...|++|++++|++++++.+.+.+ +.. +.+|.++.+++.+.++
T Consensus 162 ~~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---------g~~---~~~~~~~~~~l~~~~~ 228 (369)
T 2eez_A 162 PGVAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---------GGR---VITLTATEANIKKSVQ 228 (369)
T ss_dssp TBBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---------TTS---EEEEECCHHHHHHHHH
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---------Cce---EEEecCCHHHHHHHHh
Confidence 3578899999999 99999999999999999999999988877654332 112 3567778877766654
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMH 210 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~ 210 (298)
+.|++|+|+|..... .+..+++..++.|+ ++|.||++++..+
T Consensus 229 -------~~DvVi~~~g~~~~~-------------------~~~li~~~~l~~mk--~gg~iV~v~~~~g 270 (369)
T 2eez_A 229 -------HADLLIGAVLVPGAK-------------------APKLVTRDMLSLMK--EGAVIVDVAVDQG 270 (369)
T ss_dssp -------HCSEEEECCC--------------------------CCSCHHHHTTSC--TTCEEEECC----
T ss_pred -------CCCEEEECCCCCccc-------------------cchhHHHHHHHhhc--CCCEEEEEecCCC
Confidence 589999999974210 01223566677775 3689999998754
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=1.9e-08 Score=89.87 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=74.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++|||||++|||.++++.+...|++|++++|++++++.+ +++ + .. ..+|.++.+++.+.+.++.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~-------g--~~---~~~d~~~~~~~~~~~~~~~ 211 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQI-------G--FD---AAFNYKTVNSLEEALKKAS 211 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT-------T--CS---EEEETTSCSCHHHHHHHHC
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-Hhc-------C--Cc---EEEecCCHHHHHHHHHHHh
Confidence 479999999999999999999999999999999998877655 332 1 11 2347777445555555554
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMH 210 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~ 210 (298)
. +.+|++|||+|. + ..+..+..++. +|++|.++...+
T Consensus 212 ~--~~~d~vi~~~g~-----------~---------------~~~~~~~~l~~--~G~~v~~g~~~~ 248 (333)
T 1v3u_A 212 P--DGYDCYFDNVGG-----------E---------------FLNTVLSQMKD--FGKIAICGAISV 248 (333)
T ss_dssp T--TCEEEEEESSCH-----------H---------------HHHHHHTTEEE--EEEEEECCCCC-
T ss_pred C--CCCeEEEECCCh-----------H---------------HHHHHHHHHhc--CCEEEEEecccc
Confidence 3 579999999992 0 02334444543 589999987643
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.2e-08 Score=88.19 Aligned_cols=104 Identities=12% Similarity=-0.004 Sum_probs=76.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+||++|||.++++.+...|++|++++|++++++.+ +++ + .. ..+|+++.+++.+.+.++.
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~-~~~-------g--~~---~~~d~~~~~~~~~~~~~~~ 235 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELF-RSI-------G--GE---VFIDFTKEKDIVGAVLKAT 235 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHH-HHT-------T--CC---EEEETTTCSCHHHHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHH-HHc-------C--Cc---eEEecCccHhHHHHHHHHh
Confidence 478999999999999999999999999999999998877543 221 1 12 2247776556666666655
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM 209 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~ 209 (298)
.. .+|++|+|+|.. ...+.+++.|++ +|++|++++..
T Consensus 236 ~~--~~D~vi~~~g~~-------------------------~~~~~~~~~l~~--~G~iv~~g~~~ 272 (347)
T 2hcy_A 236 DG--GAHGVINVSVSE-------------------------AAIEASTRYVRA--NGTTVLVGMPA 272 (347)
T ss_dssp TS--CEEEEEECSSCH-------------------------HHHHHHTTSEEE--EEEEEECCCCT
T ss_pred CC--CCCEEEECCCcH-------------------------HHHHHHHHHHhc--CCEEEEEeCCC
Confidence 44 799999999841 134555666654 57999998754
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.64 E-value=5.9e-08 Score=90.36 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=62.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+++.++|+| ++|+|+++|+.|++.|++|++++|+.++++++.+++ ..+..+.+|++|.+++.++++
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~----------~~~~~~~~Dv~d~~~l~~~l~--- 67 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV----------QHSTPISLDVNDDAALDAEVA--- 67 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTC----------TTEEEEECCTTCHHHHHHHHT---
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhc----------CCceEEEeecCCHHHHHHHHc---
Confidence 468899997 799999999999999999999999987766553221 136788999999988776653
Q ss_pred cccCCccEEEEccCCC
Q 022369 144 GRLGPLHVLINNAGIF 159 (298)
Q Consensus 144 ~~~g~idilVnnag~~ 159 (298)
++|++|||++..
T Consensus 68 ----~~DvVIn~a~~~ 79 (450)
T 1ff9_A 68 ----KHDLVISLIPYT 79 (450)
T ss_dssp ----TSSEEEECCC--
T ss_pred ----CCcEEEECCccc
Confidence 699999999864
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.9e-07 Score=80.61 Aligned_cols=84 Identities=15% Similarity=0.194 Sum_probs=65.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC---chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN---LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
.+++||++||+|+ +|+|++++..|++.|+ +|++++|+ .++.+++.+++....+ +.+...++.+.+++.
T Consensus 150 ~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~-------~~~~~~~~~~~~~l~ 221 (315)
T 3tnl_A 150 HDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTD-------CKAQLFDIEDHEQLR 221 (315)
T ss_dssp CCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSS-------CEEEEEETTCHHHHH
T ss_pred CCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcC-------CceEEeccchHHHHH
Confidence 3578999999998 6999999999999999 99999999 8889988888876421 223345666666554
Q ss_pred HHHHHHhcccCCccEEEEccCCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIF 159 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~ 159 (298)
+.+. ..|++||+....
T Consensus 222 ~~l~-------~aDiIINaTp~G 237 (315)
T 3tnl_A 222 KEIA-------ESVIFTNATGVG 237 (315)
T ss_dssp HHHH-------TCSEEEECSSTT
T ss_pred hhhc-------CCCEEEECccCC
Confidence 4333 589999997654
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-07 Score=81.10 Aligned_cols=77 Identities=21% Similarity=0.314 Sum_probs=58.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|+++|+|+ +|+|+++|+.|++.|++|++++|+.++++++.+++... ..+. ..|+ +++
T Consensus 116 ~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~-------~~~~--~~~~---~~~------ 176 (271)
T 1nyt_A 116 IRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHT-------GSIQ--ALSM---DEL------ 176 (271)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGG-------SSEE--ECCS---GGG------
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhcc-------CCee--EecH---HHh------
Confidence 457899999998 69999999999999999999999999988887665321 0121 2343 211
Q ss_pred HhcccCCccEEEEccCCCC
Q 022369 142 WNGRLGPLHVLINNAGIFS 160 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~ 160 (298)
.+ ++.|++|||+|...
T Consensus 177 -~~--~~~DivVn~t~~~~ 192 (271)
T 1nyt_A 177 -EG--HEFDLIINATSSGI 192 (271)
T ss_dssp -TT--CCCSEEEECCSCGG
T ss_pred -cc--CCCCEEEECCCCCC
Confidence 11 68999999999754
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.2e-07 Score=85.70 Aligned_cols=80 Identities=19% Similarity=0.198 Sum_probs=63.1
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.+++++.++|+|+ ||+|+++++.|++. |++|++++|+.++++++.+. . .+..+.+|+.|.+++.+++
T Consensus 19 ~~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~--~---------~~~~~~~D~~d~~~l~~~l 86 (467)
T 2axq_A 19 GRHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP--S---------GSKAISLDVTDDSALDKVL 86 (467)
T ss_dssp ----CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG--G---------TCEEEECCTTCHHHHHHHH
T ss_pred cCCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh--c---------CCcEEEEecCCHHHHHHHH
Confidence 3566789999997 99999999999998 78999999998887766432 1 2456789999998877665
Q ss_pred HHHhcccCCccEEEEccCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIF 159 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~ 159 (298)
+ ++|++||+++..
T Consensus 87 ~-------~~DvVIn~tp~~ 99 (467)
T 2axq_A 87 A-------DNDVVISLIPYT 99 (467)
T ss_dssp H-------TSSEEEECSCGG
T ss_pred c-------CCCEEEECCchh
Confidence 4 689999999864
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=2.6e-07 Score=82.22 Aligned_cols=104 Identities=15% Similarity=0.160 Sum_probs=72.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++|||||++|||.++++.+...|++|++++|++++++.+.+ + . ... .+|.++.+..+++.+...
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~-~----g-----~~~---~~~~~~~~~~~~~~~~~~ 206 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-A----G-----AWQ---VINYREEDLVERLKEITG 206 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-H----T-----CSE---EEETTTSCHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-c----C-----CCE---EEECCCccHHHHHHHHhC
Confidence 47899999999999999999999999999999999887765532 2 1 121 246666555554444332
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMH 210 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~ 210 (298)
. ..+|++|||+|. . . .+..+..++. +|++|.+++..+
T Consensus 207 ~--~~~D~vi~~~g~-~----------~---------------~~~~~~~l~~--~G~iv~~g~~~~ 243 (327)
T 1qor_A 207 G--KKVRVVYDSVGR-D----------T---------------WERSLDCLQR--RGLMVSFGNSSG 243 (327)
T ss_dssp T--CCEEEEEECSCG-G----------G---------------HHHHHHTEEE--EEEEEECCCTTC
T ss_pred C--CCceEEEECCch-H----------H---------------HHHHHHHhcC--CCEEEEEecCCC
Confidence 2 369999999982 1 1 2344455543 589999987654
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.8e-07 Score=80.21 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=59.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++|||||++|||.++++.+...|++|++++|++++++.+.+ +. ... .+|.++.+..+++.+...
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~-~g---------~~~---~~d~~~~~~~~~i~~~~~ 211 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK-LG---------CHH---TINYSTQDFAEVVREITG 211 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HT---------CSE---EEETTTSCHHHHHHHHHT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC---------CCE---EEECCCHHHHHHHHHHhC
Confidence 47899999999999999999999999999999999877765532 21 121 246666554444444332
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
. ..+|++|||+|.
T Consensus 212 ~--~~~d~vi~~~g~ 224 (333)
T 1wly_A 212 G--KGVDVVYDSIGK 224 (333)
T ss_dssp T--CCEEEEEECSCT
T ss_pred C--CCCeEEEECCcH
Confidence 2 369999999984
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.45 E-value=7.7e-07 Score=69.10 Aligned_cols=74 Identities=18% Similarity=0.229 Sum_probs=59.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+++++|+|+ |.+|.++|+.|.++|++|+++++++++++.+.+. .+.++..|.++++.++++
T Consensus 6 ~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~------------~~~~~~gd~~~~~~l~~~------ 66 (141)
T 3llv_A 6 RYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE------------GFDAVIADPTDESFYRSL------ 66 (141)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT------------TCEEEECCTTCHHHHHHS------
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC------------CCcEEECCCCCHHHHHhC------
Confidence 467999998 6799999999999999999999998877665321 356788999999876543
Q ss_pred ccCCccEEEEccC
Q 022369 145 RLGPLHVLINNAG 157 (298)
Q Consensus 145 ~~g~idilVnnag 157 (298)
...+.|++|.+.+
T Consensus 67 ~~~~~d~vi~~~~ 79 (141)
T 3llv_A 67 DLEGVSAVLITGS 79 (141)
T ss_dssp CCTTCSEEEECCS
T ss_pred CcccCCEEEEecC
Confidence 2347899998776
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2e-07 Score=72.29 Aligned_cols=77 Identities=16% Similarity=0.214 Sum_probs=57.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+++++++|+|+ |++|..+++.|.+.|++|++++|++++.+.+. + . ....+..|.++.+.+.++
T Consensus 4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~----~----~----~~~~~~~d~~~~~~l~~~---- 66 (144)
T 2hmt_A 4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----S----Y----ATHAVIANATEENELLSL---- 66 (144)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT----T----T----CSEEEECCTTCHHHHHTT----
T ss_pred CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----H----h----CCEEEEeCCCCHHHHHhc----
Confidence 45678999998 99999999999999999999999976654331 1 1 234677899987655432
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
...+.|++|++++.
T Consensus 67 --~~~~~d~vi~~~~~ 80 (144)
T 2hmt_A 67 --GIRNFEYVIVAIGA 80 (144)
T ss_dssp --TGGGCSEEEECCCS
T ss_pred --CCCCCCEEEECCCC
Confidence 23479999999884
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.5e-07 Score=82.98 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=59.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+||++|||..+++.+...|++|++++|++++++.+.+++ +... .+|.++.+++.+.++++.
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~---------g~~~---~~d~~~~~~~~~~~~~~~ 222 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKF---------GFDD---AFNYKEESDLTAALKRCF 222 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTS---------CCSE---EEETTSCSCSHHHHHHHC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---------CCce---EEecCCHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999988776553222 1121 236665444445555544
Q ss_pred cccCCccEEEEccC
Q 022369 144 GRLGPLHVLINNAG 157 (298)
Q Consensus 144 ~~~g~idilVnnag 157 (298)
. +.+|++|+|+|
T Consensus 223 ~--~~~d~vi~~~g 234 (345)
T 2j3h_A 223 P--NGIDIYFENVG 234 (345)
T ss_dssp T--TCEEEEEESSC
T ss_pred C--CCCcEEEECCC
Confidence 2 47999999998
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=5.1e-07 Score=81.36 Aligned_cols=80 Identities=11% Similarity=0.075 Sum_probs=58.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++|||||++|||.++++.+...|++|++++|++++++.+ +++. .. ..+|.++.+..+++.+..
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~g---------~~---~~~~~~~~~~~~~~~~~~- 227 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EKLG---------AA---AGFNYKKEDFSEATLKFT- 227 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHHT---------CS---EEEETTTSCHHHHHHHHT-
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcC---------Cc---EEEecCChHHHHHHHHHh-
Confidence 478999999999999999999999999999999998887765 3321 12 224666654444443322
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
.. +.+|++|+|+|.
T Consensus 228 ~~-~~~d~vi~~~G~ 241 (354)
T 2j8z_A 228 KG-AGVNLILDCIGG 241 (354)
T ss_dssp TT-SCEEEEEESSCG
T ss_pred cC-CCceEEEECCCc
Confidence 11 369999999994
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.2e-06 Score=76.43 Aligned_cols=80 Identities=10% Similarity=0.166 Sum_probs=56.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+||++|||...++.+...|++|+.+++++++++.+ +++ +... ..|..+.+..+++.+ ..
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~---------ga~~---~~~~~~~~~~~~~~~-~~ 213 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIA-KEY---------GAEY---LINASKEDILRQVLK-FT 213 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT---------TCSE---EEETTTSCHHHHHHH-HT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHc---------CCcE---EEeCCCchHHHHHHH-Hh
Confidence 478999999999999999999999999999999998887744 222 1121 234444443333322 22
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
.. ..+|++|+|+|.
T Consensus 214 ~~-~g~D~vid~~g~ 227 (334)
T 3qwb_A 214 NG-KGVDASFDSVGK 227 (334)
T ss_dssp TT-SCEEEEEECCGG
T ss_pred CC-CCceEEEECCCh
Confidence 21 369999999984
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=6.7e-07 Score=80.53 Aligned_cols=80 Identities=9% Similarity=0.139 Sum_probs=57.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|++++|+||++|||.++++.+...|++|++++|++++++.+ +++ +.. ..+|.++.+..+++.+..
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~---------ga~---~~~d~~~~~~~~~~~~~~- 235 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-LQN---------GAH---EVFNHREVNYIDKIKKYV- 235 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHT---------TCS---EEEETTSTTHHHHHHHHH-
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHH-HHc---------CCC---EEEeCCCchHHHHHHHHc-
Confidence 478999999999999999999999999999999998877633 221 112 124666655444443332
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
. .+.+|++|+|+|.
T Consensus 236 ~-~~~~D~vi~~~G~ 249 (351)
T 1yb5_A 236 G-EKGIDIIIEMLAN 249 (351)
T ss_dssp C-TTCEEEEEESCHH
T ss_pred C-CCCcEEEEECCCh
Confidence 1 1369999999983
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.4e-07 Score=81.82 Aligned_cols=77 Identities=14% Similarity=0.113 Sum_probs=56.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+++|||||++|||.++++.+...|+ +|+++++++++++.+.+++ +.. ..+|.++.+.. +.+.+...
T Consensus 162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~---------g~~---~~~d~~~~~~~-~~~~~~~~ 228 (357)
T 2zb4_A 162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSEL---------GFD---AAINYKKDNVA-EQLRESCP 228 (357)
T ss_dssp CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTS---------CCS---EEEETTTSCHH-HHHHHHCT
T ss_pred cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHc---------CCc---eEEecCchHHH-HHHHHhcC
Confidence 8999999999999999999999999 9999999987776654322 111 23466664333 33333332
Q ss_pred ccCCccEEEEccC
Q 022369 145 RLGPLHVLINNAG 157 (298)
Q Consensus 145 ~~g~idilVnnag 157 (298)
+.+|++|+|+|
T Consensus 229 --~~~d~vi~~~G 239 (357)
T 2zb4_A 229 --AGVDVYFDNVG 239 (357)
T ss_dssp --TCEEEEEESCC
T ss_pred --CCCCEEEECCC
Confidence 26999999999
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=5.6e-07 Score=80.37 Aligned_cols=103 Identities=15% Similarity=0.189 Sum_probs=71.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+||++|||.++++.+...|++|++++|++++++.+.+++ +... .+|..+.+..+.+ .++.
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~---------g~~~---~~~~~~~~~~~~~-~~~~ 215 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEEL---------GFDG---AIDYKNEDLAAGL-KREC 215 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT---------CCSE---EEETTTSCHHHHH-HHHC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---------CCCE---EEECCCHHHHHHH-HHhc
Confidence 4789999999999999999999999999999999988877653332 1111 2455554433333 3332
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM 209 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~ 209 (298)
.+.+|++|+|+|.. ..+.++..++. .|++|.++...
T Consensus 216 --~~~~d~vi~~~g~~--------------------------~~~~~~~~l~~--~G~iv~~G~~~ 251 (336)
T 4b7c_A 216 --PKGIDVFFDNVGGE--------------------------ILDTVLTRIAF--KARIVLCGAIS 251 (336)
T ss_dssp --TTCEEEEEESSCHH--------------------------HHHHHHTTEEE--EEEEEECCCGG
T ss_pred --CCCceEEEECCCcc--------------------------hHHHHHHHHhh--CCEEEEEeecc
Confidence 24799999999841 12334444543 58999988765
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=2e-06 Score=77.82 Aligned_cols=100 Identities=18% Similarity=0.142 Sum_probs=69.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc---hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL---KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+++|++|||+|| +|||..+++.+...|++|+++++++ ++++.+ +++ ....+ | .+ +-.+++
T Consensus 178 ~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~-~~~-----------ga~~v--~-~~-~~~~~~ 240 (366)
T 2cdc_A 178 TLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVI-EET-----------KTNYY--N-SS-NGYDKL 240 (366)
T ss_dssp SSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHH-HHH-----------TCEEE--E-CT-TCSHHH
T ss_pred cCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHH-HHh-----------CCcee--c-hH-HHHHHH
Confidence 566899999999 9999999999999999999999998 766433 232 12222 5 44 222222
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHH-HHHhhhhhcCCCCeEEEEcCCc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLS-ILLFPSLIRGSPSRIINVNSVM 209 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~-~~~lp~m~~~~~g~Iv~isS~~ 209 (298)
.+ .. +.+|++|+|+|... .+ +.+++.|+. +|+||+++...
T Consensus 241 -~~-~~--~~~d~vid~~g~~~-------------------------~~~~~~~~~l~~--~G~iv~~g~~~ 281 (366)
T 2cdc_A 241 -KD-SV--GKFDVIIDATGADV-------------------------NILGNVIPLLGR--NGVLGLFGFST 281 (366)
T ss_dssp -HH-HH--CCEEEEEECCCCCT-------------------------HHHHHHGGGEEE--EEEEEECSCCC
T ss_pred -HH-hC--CCCCEEEECCCChH-------------------------HHHHHHHHHHhc--CCEEEEEecCC
Confidence 22 22 57999999998521 22 556666644 58999998754
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=4.7e-06 Score=73.57 Aligned_cols=84 Identities=17% Similarity=0.190 Sum_probs=62.2
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC---chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN---LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
.++++|.+||+|+ +|.|++++..|++.|+ +|++++|+ .++++++.+++....+ ..+. ..++.+.+...
T Consensus 144 ~~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~-----~~v~--~~~~~~l~~~~ 215 (312)
T 3t4e_A 144 FDMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTD-----CVVT--VTDLADQHAFT 215 (312)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSS-----CEEE--EEETTCHHHHH
T ss_pred CCcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccC-----cceE--EechHhhhhhH
Confidence 3577899999998 8999999999999999 89999999 8888888888766421 1233 34555543322
Q ss_pred HHHHHHhcccCCccEEEEccCCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIF 159 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~ 159 (298)
+.+. +.|++||+.+..
T Consensus 216 ~~l~-------~~DiIINaTp~G 231 (312)
T 3t4e_A 216 EALA-------SADILTNGTKVG 231 (312)
T ss_dssp HHHH-------HCSEEEECSSTT
T ss_pred hhcc-------CceEEEECCcCC
Confidence 2222 479999987664
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=98.28 E-value=3.7e-06 Score=73.33 Aligned_cols=81 Identities=14% Similarity=0.153 Sum_probs=61.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|+++|+|+ +|+|++++..|++.|+ +|++++|+.++.+++.+++...... ..+. ..+..+. .+.++
T Consensus 124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~----~~i~--~~~~~~l---~~~l~ 193 (283)
T 3jyo_A 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGR----EAVV--GVDARGI---EDVIA 193 (283)
T ss_dssp TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTS----CCEE--EECSTTH---HHHHH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCC----ceEE--EcCHHHH---HHHHh
Confidence 577899999998 7999999999999999 7999999999999999888765432 1233 3344332 22222
Q ss_pred HHhcccCCccEEEEccCCC
Q 022369 141 AWNGRLGPLHVLINNAGIF 159 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~ 159 (298)
+.|++||+....
T Consensus 194 -------~~DiVInaTp~G 205 (283)
T 3jyo_A 194 -------AADGVVNATPMG 205 (283)
T ss_dssp -------HSSEEEECSSTT
T ss_pred -------cCCEEEECCCCC
Confidence 479999998654
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-06 Score=75.32 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=57.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|+++|+|+ ||+|++++..|++.|++|++++|+.++++++.+++... ..+.. .|+ +++
T Consensus 116 ~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~-------~~~~~--~~~---~~~------ 176 (272)
T 1p77_A 116 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY-------GNIQA--VSM---DSI------ 176 (272)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG-------SCEEE--EEG---GGC------
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcccc-------CCeEE--eeH---HHh------
Confidence 467899999998 79999999999999999999999999998887776431 02222 232 111
Q ss_pred HhcccCCccEEEEccCCCC
Q 022369 142 WNGRLGPLHVLINNAGIFS 160 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~ 160 (298)
.+ ++.|++||+++...
T Consensus 177 -~~--~~~DivIn~t~~~~ 192 (272)
T 1p77_A 177 -PL--QTYDLVINATSAGL 192 (272)
T ss_dssp -CC--SCCSEEEECCCC--
T ss_pred -cc--CCCCEEEECCCCCC
Confidence 01 57999999999754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.5e-06 Score=76.53 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=57.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|+++|||||++|||..+++.+... |++|+++++++++++.+. ++. ... .+|.++.+..+++ .++
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~-~~g---------~~~---~~~~~~~~~~~~~-~~~ 235 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RAG---------ADY---VINASMQDPLAEI-RRI 235 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HHT---------CSE---EEETTTSCHHHHH-HHH
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhC---------CCE---EecCCCccHHHHH-HHH
Confidence 4789999999999999999999999 999999999988776552 221 121 2355554433332 333
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
... +.+|++|+|+|.
T Consensus 236 ~~~-~~~d~vi~~~g~ 250 (347)
T 1jvb_A 236 TES-KGVDAVIDLNNS 250 (347)
T ss_dssp TTT-SCEEEEEESCCC
T ss_pred hcC-CCceEEEECCCC
Confidence 221 579999999995
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.9e-06 Score=80.09 Aligned_cols=109 Identities=11% Similarity=0.161 Sum_probs=72.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEE--EcCCC---------CH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAM--ELDLL---------SL 132 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~D~s---------~~ 132 (298)
.|++|||+||++|||...++.+...|++|+++++++++++.+. ++ |....+- ..|+. +.
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~-~l---------Ga~~~i~~~~~~~~~~~~~~~~~~~ 289 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVR-AL---------GCDLVINRAELGITDDIADDPRRVV 289 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HT---------TCCCEEEHHHHTCCTTGGGCHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hc---------CCCEEEecccccccccccccccccc
Confidence 5799999999999999999999999999999999988777552 22 1122221 12321 12
Q ss_pred HHHHHHHHHHhcccC-CccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcc
Q 022369 133 DSVVRFSEAWNGRLG-PLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMH 210 (298)
Q Consensus 133 ~~v~~~~~~~~~~~g-~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~ 210 (298)
++++++.+++.+..| .+|++|+|+|.. .+ +..+..++ .+|+||++++..+
T Consensus 290 ~~~~~~~~~v~~~~g~g~Dvvid~~G~~-----------~~---------------~~~~~~l~--~~G~iv~~G~~~~ 340 (447)
T 4a0s_A 290 ETGRKLAKLVVEKAGREPDIVFEHTGRV-----------TF---------------GLSVIVAR--RGGTVVTCGSSSG 340 (447)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEECSCHH-----------HH---------------HHHHHHSC--TTCEEEESCCTTC
T ss_pred hhhhHHHHHHHHHhCCCceEEEECCCch-----------HH---------------HHHHHHHh--cCCEEEEEecCCC
Confidence 344445555555444 699999999831 11 33344443 4689999987654
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.19 E-value=3.8e-06 Score=75.18 Aligned_cols=104 Identities=11% Similarity=0.028 Sum_probs=71.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+||++|+|..+++.+...|++|+.+++++++++.+. ++ . ... .+|.++.+-. +.+.++.
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~----g-----a~~---~~d~~~~~~~-~~~~~~~ 231 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-AL----G-----ADE---TVNYTHPDWP-KEVRRLT 231 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HH----T-----CSE---EEETTSTTHH-HHHHHHT
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hc----C-----CCE---EEcCCcccHH-HHHHHHh
Confidence 4789999999999999999999999999999999988877653 22 1 121 2466665422 2233332
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMH 210 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~ 210 (298)
. ...+|++|+|+| .. ..+.++..++. .|++|.+++..+
T Consensus 232 ~-~~~~d~vi~~~g-~~-------------------------~~~~~~~~l~~--~G~~v~~g~~~~ 269 (343)
T 2eih_A 232 G-GKGADKVVDHTG-AL-------------------------YFEGVIKATAN--GGRIAIAGASSG 269 (343)
T ss_dssp T-TTCEEEEEESSC-SS-------------------------SHHHHHHHEEE--EEEEEESSCCCS
T ss_pred C-CCCceEEEECCC-HH-------------------------HHHHHHHhhcc--CCEEEEEecCCC
Confidence 2 136999999999 21 02334444543 579999987654
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.8e-06 Score=74.90 Aligned_cols=79 Identities=15% Similarity=0.164 Sum_probs=57.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+||++|||.++++.+...|++|+++++++++++.+.+ +. ... .+|..+.+..+.+.+ ..
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-lG---------a~~---~~~~~~~~~~~~~~~-~~ 232 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER-LG---------AKR---GINYRSEDFAAVIKA-ET 232 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HT---------CSE---EEETTTSCHHHHHHH-HH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cC---------CCE---EEeCCchHHHHHHHH-Hh
Confidence 47899999999999999999999999999999999888775532 21 121 135555443333333 32
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
.+.+|++|+|+|.
T Consensus 233 --~~g~Dvvid~~g~ 245 (353)
T 4dup_A 233 --GQGVDIILDMIGA 245 (353)
T ss_dssp --SSCEEEEEESCCG
T ss_pred --CCCceEEEECCCH
Confidence 3479999999984
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=4.9e-06 Score=73.91 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=70.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+||++|||...++.+...|++|+++++++++++.+. ++. ... ..|.++.+..+++.+..
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~G---------a~~---~~~~~~~~~~~~~~~~~- 205 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-ALG---------AWE---TIDYSHEDVAKRVLELT- 205 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHT---------CSE---EEETTTSCHHHHHHHHT-
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcC---------CCE---EEeCCCccHHHHHHHHh-
Confidence 4789999999999999999999999999999999988877553 221 111 23555544333333322
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMH 210 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~ 210 (298)
.. ..+|++|+|+|.. .....+..+++ +|++|.++...+
T Consensus 206 ~~-~g~Dvvid~~g~~--------------------------~~~~~~~~l~~--~G~iv~~g~~~~ 243 (325)
T 3jyn_A 206 DG-KKCPVVYDGVGQD--------------------------TWLTSLDSVAP--RGLVVSFGNASG 243 (325)
T ss_dssp TT-CCEEEEEESSCGG--------------------------GHHHHHTTEEE--EEEEEECCCTTC
T ss_pred CC-CCceEEEECCChH--------------------------HHHHHHHHhcC--CCEEEEEecCCC
Confidence 11 2699999999941 11233444443 589999987654
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=98.08 E-value=8.5e-06 Score=72.81 Aligned_cols=80 Identities=18% Similarity=0.124 Sum_probs=56.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+||++|||...++.+...|++|+++++++++++.+.+ +. ... .+|..+.+..+++.+ ..
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-lg---------a~~---~~~~~~~~~~~~~~~-~~ 209 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR-LG---------AAY---VIDTSTAPLYETVME-LT 209 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-HT---------CSE---EEETTTSCHHHHHHH-HT
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-CC---------CcE---EEeCCcccHHHHHHH-Hh
Confidence 47899999999999999999998899999999999988776543 21 122 135554443333322 22
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
.. ..+|++|+|+|.
T Consensus 210 ~~-~g~Dvvid~~g~ 223 (340)
T 3gms_A 210 NG-IGADAAIDSIGG 223 (340)
T ss_dssp TT-SCEEEEEESSCH
T ss_pred CC-CCCcEEEECCCC
Confidence 21 269999999985
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.4e-05 Score=71.03 Aligned_cols=107 Identities=17% Similarity=0.152 Sum_probs=73.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
..+.|++++|+|+ |+||..+|+.+...|++|++++|++++++.+.+.+. ..+ .+|..+.+++.+.+.
T Consensus 164 ~~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g---------~~~---~~~~~~~~~l~~~l~ 230 (377)
T 2vhw_A 164 PGVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFC---------GRI---HTRYSSAYELEGAVK 230 (377)
T ss_dssp TTBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTT---------TSS---EEEECCHHHHHHHHH
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcC---------Cee---EeccCCHHHHHHHHc
Confidence 3688999999998 999999999999999999999999888776643321 122 123445555554443
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCC
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSV 208 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~ 208 (298)
+.|++|++++.... ... ..+.+..++.|++ ++.||++++.
T Consensus 231 -------~aDvVi~~~~~p~~-~t~------------------~li~~~~l~~mk~--g~~iV~va~~ 270 (377)
T 2vhw_A 231 -------RADLVIGAVLVPGA-KAP------------------KLVSNSLVAHMKP--GAVLVDIAID 270 (377)
T ss_dssp -------HCSEEEECCCCTTS-CCC------------------CCBCHHHHTTSCT--TCEEEEGGGG
T ss_pred -------CCCEEEECCCcCCC-CCc------------------ceecHHHHhcCCC--CcEEEEEecC
Confidence 58999999986432 100 1123445566653 5799999964
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.3e-05 Score=70.06 Aligned_cols=79 Identities=18% Similarity=0.226 Sum_probs=55.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+||++|||...++.+...|++|+++++++++++.+.+ +. .. .++ |.. +++.+.+.++.
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-~g---------a~-~v~--~~~--~~~~~~v~~~~ 223 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKS-VG---------AD-IVL--PLE--EGWAKAVREAT 223 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-HT---------CS-EEE--ESS--TTHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cC---------Cc-EEe--cCc--hhHHHHHHHHh
Confidence 47899999999999999999999999999999999988765432 21 11 222 333 23333333332
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
.. ..+|++|+|+|.
T Consensus 224 ~~-~g~Dvvid~~g~ 237 (342)
T 4eye_A 224 GG-AGVDMVVDPIGG 237 (342)
T ss_dssp TT-SCEEEEEESCC-
T ss_pred CC-CCceEEEECCch
Confidence 21 259999999995
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.00 E-value=5.7e-05 Score=57.78 Aligned_cols=75 Identities=15% Similarity=0.271 Sum_probs=56.1
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
++.++|+|+ |.+|..+|+.|.+.|++|++++|+++..+.+.+. ..+.++..|.++.+.+.+.
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-----------~~~~~~~~d~~~~~~l~~~------ 65 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-----------IDALVINGDCTKIKTLEDA------ 65 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----------CSSEEEESCTTSHHHHHHT------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh-----------cCcEEEEcCCCCHHHHHHc------
Confidence 357889987 9999999999999999999999998776654322 1245677899887754321
Q ss_pred ccCCccEEEEccC
Q 022369 145 RLGPLHVLINNAG 157 (298)
Q Consensus 145 ~~g~idilVnnag 157 (298)
...+.|++|.+.+
T Consensus 66 ~~~~~d~vi~~~~ 78 (140)
T 1lss_A 66 GIEDADMYIAVTG 78 (140)
T ss_dssp TTTTCSEEEECCS
T ss_pred CcccCCEEEEeeC
Confidence 1346899999875
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1e-05 Score=72.14 Aligned_cols=158 Identities=8% Similarity=0.015 Sum_probs=96.1
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-------EEEEEEcC----chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-------HVVMAVRN----LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDS 134 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-------~Vil~~r~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 134 (298)
..++||||+|.+|..++..|+.+|. .|+++|++ +++++....++.... . .+. .|+....+
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~----~--~~~---~~i~~~~~ 76 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCA----F--PLL---AGMTAHAD 76 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTT----C--TTE---EEEEEESS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhc----c--ccc---CcEEEecC
Confidence 4799999999999999999999885 89999998 666666555555421 0 111 13332222
Q ss_pred HHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC
Q 022369 135 VVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 135 v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~ 214 (298)
..+. +.+.|++|+.||.... ...+ -.+.+..|+-....+.+.+..+- ...++||++|........
T Consensus 77 ~~~a-------l~~aD~Vi~~ag~~~~---~g~~---r~dl~~~N~~i~~~i~~~i~~~~--~p~a~ii~~SNPv~~~t~ 141 (329)
T 1b8p_A 77 PMTA-------FKDADVALLVGARPRG---PGME---RKDLLEANAQIFTVQGKAIDAVA--SRNIKVLVVGNPANTNAY 141 (329)
T ss_dssp HHHH-------TTTCSEEEECCCCCCC---TTCC---HHHHHHHHHHHHHHHHHHHHHHS--CTTCEEEECSSSHHHHHH
T ss_pred cHHH-------hCCCCEEEEeCCCCCC---CCCC---HHHHHHHHHHHHHHHHHHHHHhc--CCCeEEEEccCchHHHHH
Confidence 2222 2368999999997532 1122 23467778777777776654431 135699999985432211
Q ss_pred CCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHc
Q 022369 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRL 253 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~ 253 (298)
.-+. ....+|....|+.++.--..+...++.++
T Consensus 142 ~~~~------~~~~~p~~~v~g~t~Ld~~r~~~~la~~l 174 (329)
T 1b8p_A 142 IAMK------SAPSLPAKNFTAMLRLDHNRALSQIAAKT 174 (329)
T ss_dssp HHHH------TCTTSCGGGEEECCHHHHHHHHHHHHHHH
T ss_pred HHHH------HcCCCCHHHEEEeecHHHHHHHHHHHHHh
Confidence 1000 00023444458888765556666777776
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.94 E-value=4e-05 Score=66.68 Aligned_cols=75 Identities=16% Similarity=0.295 Sum_probs=57.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++.+++.+++.... .+.....+ + +
T Consensus 123 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~-------~~~~~~~~--~---l----- 184 (281)
T 3o8q_A 123 LLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYG-------EVKAQAFE--Q---L----- 184 (281)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGS-------CEEEEEGG--G---C-----
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccC-------CeeEeeHH--H---h-----
Confidence 567899999998 6999999999999996 99999999999999888775421 23333221 1 1
Q ss_pred HHhcccCCccEEEEccCCC
Q 022369 141 AWNGRLGPLHVLINNAGIF 159 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~ 159 (298)
. .+.|++||+.+..
T Consensus 185 --~---~~aDiIInaTp~g 198 (281)
T 3o8q_A 185 --K---QSYDVIINSTSAS 198 (281)
T ss_dssp --C---SCEEEEEECSCCC
T ss_pred --c---CCCCEEEEcCcCC
Confidence 0 3689999998764
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.94 E-value=3.9e-05 Score=69.20 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=57.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.+++++++|+|+ ||+|+++++.+...|++|++++|++++++.+.+.... .+..+ ..+.+++.+.+
T Consensus 164 ~l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~---------~~~~~---~~~~~~~~~~~-- 228 (361)
T 1pjc_A 164 GVKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS---------RVELL---YSNSAEIETAV-- 228 (361)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG---------GSEEE---ECCHHHHHHHH--
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc---------eeEee---eCCHHHHHHHH--
Confidence 467799999999 9999999999999999999999999888877544321 22222 23344443322
Q ss_pred HhcccCCccEEEEccCCC
Q 022369 142 WNGRLGPLHVLINNAGIF 159 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~ 159 (298)
...|++||+++..
T Consensus 229 -----~~~DvVI~~~~~~ 241 (361)
T 1pjc_A 229 -----AEADLLIGAVLVP 241 (361)
T ss_dssp -----HTCSEEEECCCCT
T ss_pred -----cCCCEEEECCCcC
Confidence 2689999999874
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.93 E-value=1.5e-05 Score=69.97 Aligned_cols=78 Identities=24% Similarity=0.336 Sum_probs=56.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++++++|+|+ ||+|++++..|++.|+ +|++++|+.++++++.+++... .. ++.+.++
T Consensus 138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~-------~~------~~~~~~~------ 197 (297)
T 2egg_A 138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDER-------RS------AYFSLAE------ 197 (297)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSS-------SC------CEECHHH------
T ss_pred CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhc-------cC------ceeeHHH------
Confidence 467899999998 7999999999999998 9999999999888876654210 00 1112222
Q ss_pred HHhcccCCccEEEEccCCCC
Q 022369 141 AWNGRLGPLHVLINNAGIFS 160 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~ 160 (298)
+.+...+.|++||+.+...
T Consensus 198 -~~~~~~~aDivIn~t~~~~ 216 (297)
T 2egg_A 198 -AETRLAEYDIIINTTSVGM 216 (297)
T ss_dssp -HHHTGGGCSEEEECSCTTC
T ss_pred -HHhhhccCCEEEECCCCCC
Confidence 2223357899999998753
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.93 E-value=4.6e-05 Score=59.85 Aligned_cols=77 Identities=16% Similarity=0.116 Sum_probs=57.6
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc-hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL-KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++.++|.|+ |.+|..+++.|.+.|++|+++++++ ++.+.+.+... ..+.++..|.++++.+++.
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~---------~~~~~i~gd~~~~~~l~~a----- 67 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG---------DNADVIPGDSNDSSVLKKA----- 67 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC---------TTCEEEESCTTSHHHHHHH-----
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc---------CCCeEEEcCCCCHHHHHHc-----
Confidence 466888886 9999999999999999999999984 55555443321 1467889999998865443
Q ss_pred cccCCccEEEEccC
Q 022369 144 GRLGPLHVLINNAG 157 (298)
Q Consensus 144 ~~~g~idilVnnag 157 (298)
...+.|.+|.+.+
T Consensus 68 -~i~~ad~vi~~~~ 80 (153)
T 1id1_A 68 -GIDRCRAILALSD 80 (153)
T ss_dssp -TTTTCSEEEECSS
T ss_pred -ChhhCCEEEEecC
Confidence 1236888888775
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=1.6e-05 Score=71.83 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=68.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+|+ ++||...++.+...|++|+++++++++++...+++ |... .+|..+.+.++++
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~l---------Ga~~---v~~~~~~~~~~~~----- 248 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNF---------GADS---FLVSRDQEQMQAA----- 248 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTS---------CCSE---EEETTCHHHHHHT-----
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc---------CCce---EEeccCHHHHHHh-----
Confidence 5789999996 99999999999999999999999988877654332 1121 2356665433222
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM 209 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~ 209 (298)
.+.+|++|+++|... .++..++.|+. .|++|++++..
T Consensus 249 --~~~~D~vid~~g~~~-------------------------~~~~~~~~l~~--~G~iv~~g~~~ 285 (366)
T 1yqd_A 249 --AGTLDGIIDTVSAVH-------------------------PLLPLFGLLKS--HGKLILVGAPE 285 (366)
T ss_dssp --TTCEEEEEECCSSCC-------------------------CSHHHHHHEEE--EEEEEECCCCS
T ss_pred --hCCCCEEEECCCcHH-------------------------HHHHHHHHHhc--CCEEEEEccCC
Confidence 247999999998531 11233444543 58999998764
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=97.89 E-value=4.4e-05 Score=71.05 Aligned_cols=85 Identities=13% Similarity=0.164 Sum_probs=61.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEE--cC--------CCCHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME--LD--------LLSLD 133 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~D--------~s~~~ 133 (298)
.|++|||+||+|++|...+..+...|++|+++++++++++.+ +++. ....+-. .| .++.+
T Consensus 228 ~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~-~~lG---------a~~vi~~~~~d~~~~~~~~~~~~~ 297 (456)
T 3krt_A 228 QGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEIC-RAMG---------AEAIIDRNAEGYRFWKDENTQDPK 297 (456)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHHT---------CCEEEETTTTTCCSEEETTEECHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHH-HhhC---------CcEEEecCcCcccccccccccchH
Confidence 478999999999999999999989999999999998887755 3321 1111111 12 24566
Q ss_pred HHHHHHHHHhcccC--CccEEEEccCC
Q 022369 134 SVVRFSEAWNGRLG--PLHVLINNAGI 158 (298)
Q Consensus 134 ~v~~~~~~~~~~~g--~idilVnnag~ 158 (298)
+++++.+++.+..+ .+|++|+++|.
T Consensus 298 ~~~~~~~~i~~~t~g~g~Dvvid~~G~ 324 (456)
T 3krt_A 298 EWKRFGKRIRELTGGEDIDIVFEHPGR 324 (456)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECSCH
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEcCCc
Confidence 66667777666443 69999999984
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=97.88 E-value=3.1e-05 Score=69.41 Aligned_cols=79 Identities=14% Similarity=0.117 Sum_probs=55.3
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
++++||+||++|||...++.+...|++|+.+++++++++.+. ++. ... + .|..+.+-.+++.+....
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~~G---------a~~-~--~~~~~~~~~~~v~~~~~~ 231 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK-DIG---------AAH-V--LNEKAPDFEATLREVMKA 231 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH-HHT---------CSE-E--EETTSTTHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcC---------CCE-E--EECCcHHHHHHHHHHhcC
Confidence 479999999999999999999999999999999998877653 221 111 2 344443333333222211
Q ss_pred ccCCccEEEEccCC
Q 022369 145 RLGPLHVLINNAGI 158 (298)
Q Consensus 145 ~~g~idilVnnag~ 158 (298)
..+|++++|+|.
T Consensus 232 --~g~D~vid~~g~ 243 (349)
T 3pi7_A 232 --EQPRIFLDAVTG 243 (349)
T ss_dssp --HCCCEEEESSCH
T ss_pred --CCCcEEEECCCC
Confidence 269999999984
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.86 E-value=9.2e-05 Score=57.24 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=58.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++ ++++|.|+ |.+|..+|+.|.+.|++|++++++++..+.+.+. .+.++..|.++++.++++
T Consensus 5 ~~~-~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~------------g~~~i~gd~~~~~~l~~a--- 67 (140)
T 3fwz_A 5 DIC-NHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVDELRER------------GVRAVLGNAANEEIMQLA--- 67 (140)
T ss_dssp CCC-SCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT------------TCEEEESCTTSHHHHHHT---
T ss_pred cCC-CCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc------------CCCEEECCCCCHHHHHhc---
Confidence 444 45778886 7899999999999999999999998887765321 456788999999866543
Q ss_pred HhcccCCccEEEEccC
Q 022369 142 WNGRLGPLHVLINNAG 157 (298)
Q Consensus 142 ~~~~~g~idilVnnag 157 (298)
...+.|.+|.+.+
T Consensus 68 ---~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 68 ---HLECAKWLILTIP 80 (140)
T ss_dssp ---TGGGCSEEEECCS
T ss_pred ---CcccCCEEEEECC
Confidence 1236788888766
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.3e-05 Score=68.35 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=52.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+||+++||...++.+...|++|+.+ +++++++.+ +++ +... +| .+.+ ..+.+.+..
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~-~~l---------Ga~~----i~-~~~~-~~~~~~~~~ 212 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYV-RDL---------GATP----ID-ASRE-PEDYAAEHT 212 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHH-HHH---------TSEE----EE-TTSC-HHHHHHHHH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHH-HHc---------CCCE----ec-cCCC-HHHHHHHHh
Confidence 47899999999999999999999999999999 777776543 222 1122 34 3322 233333332
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
.. ..+|++++|+|.
T Consensus 213 ~~-~g~D~vid~~g~ 226 (343)
T 3gaz_A 213 AG-QGFDLVYDTLGG 226 (343)
T ss_dssp TT-SCEEEEEESSCT
T ss_pred cC-CCceEEEECCCc
Confidence 22 369999999983
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=97.82 E-value=4.4e-05 Score=68.13 Aligned_cols=101 Identities=15% Similarity=0.080 Sum_probs=68.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+|| +|+|..+++.+...|++|+.+++++++++.+. ++ +.. ..+|.++.+ +.+.+.++.
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~l---------Ga~---~~~d~~~~~-~~~~~~~~~ 228 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-EL---------GAD---LVVNPLKED-AAKFMKEKV 228 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HT---------TCS---EEECTTTSC-HHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HC---------CCC---EEecCCCcc-HHHHHHHHh
Confidence 3789999999 88999999999999999999999988877542 21 112 124666543 222233332
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM 209 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~ 209 (298)
+.+|++|+++|.. + ..+..+..+++ .|++|.+++..
T Consensus 229 ---~~~d~vid~~g~~----------~---------------~~~~~~~~l~~--~G~~v~~g~~~ 264 (339)
T 1rjw_A 229 ---GGVHAAVVTAVSK----------P---------------AFQSAYNSIRR--GGACVLVGLPP 264 (339)
T ss_dssp ---SSEEEEEESSCCH----------H---------------HHHHHHHHEEE--EEEEEECCCCS
T ss_pred ---CCCCEEEECCCCH----------H---------------HHHHHHHHhhc--CCEEEEecccC
Confidence 5799999999841 1 23444455543 57999988754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=6.4e-05 Score=67.26 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=68.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|+++||+|+ +++|...++.+...|+ +|+.+++++++++.+. ++. .. . ..|..+.+ +.+.+.++
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~~G---------a~-~--~~~~~~~~-~~~~v~~~ 231 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK-KVG---------AD-Y--VINPFEED-VVKEVMDI 231 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH-HHT---------CS-E--EECTTTSC-HHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-HhC---------CC-E--EECCCCcC-HHHHHHHH
Confidence 6889999999 9999999999988999 9999999987766543 221 11 1 13554433 22223332
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMH 210 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~ 210 (298)
... ..+|++|+++|.. ...+.+++.++. .|++|.+++..+
T Consensus 232 ~~g-~g~D~vid~~g~~-------------------------~~~~~~~~~l~~--~G~iv~~g~~~~ 271 (348)
T 2d8a_A 232 TDG-NGVDVFLEFSGAP-------------------------KALEQGLQAVTP--AGRVSLLGLYPG 271 (348)
T ss_dssp TTT-SCEEEEEECSCCH-------------------------HHHHHHHHHEEE--EEEEEECCCCSS
T ss_pred cCC-CCCCEEEECCCCH-------------------------HHHHHHHHHHhc--CCEEEEEccCCC
Confidence 221 2599999999841 123444555543 579999987543
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=9.3e-05 Score=66.66 Aligned_cols=103 Identities=14% Similarity=0.091 Sum_probs=68.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+||++|||...++.+...|++|+.+++++++++.+.+ + +... . +|..+.+ +.+.+.+..
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~-~---------Ga~~-~--~~~~~~~-~~~~~~~~~ 228 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS-L---------GCDR-P--INYKTEP-VGTVLKQEY 228 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-T---------TCSE-E--EETTTSC-HHHHHHHHC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-c---------CCcE-E--EecCChh-HHHHHHHhc
Confidence 47899999999999999999999999999999999877765432 1 1121 2 2444332 333333332
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMH 210 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~ 210 (298)
. +.+|++|+|+|. +. .+.++..++. .|++|.+++..+
T Consensus 229 ~--~g~D~vid~~g~-----------~~---------------~~~~~~~l~~--~G~iv~~g~~~~ 265 (362)
T 2c0c_A 229 P--EGVDVVYESVGG-----------AM---------------FDLAVDALAT--KGRLIVIGFISG 265 (362)
T ss_dssp T--TCEEEEEECSCT-----------HH---------------HHHHHHHEEE--EEEEEECCCGGG
T ss_pred C--CCCCEEEECCCH-----------HH---------------HHHHHHHHhc--CCEEEEEeCCCC
Confidence 1 369999999982 11 2234444544 579999987643
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00011 Score=62.83 Aligned_cols=82 Identities=11% Similarity=0.184 Sum_probs=62.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc-------------------hHHHHHHHHHHHhhcCCCCCccE
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL-------------------KAANELIQKWQEEWSGKGLPLNI 122 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 122 (298)
+++++|+|.|+ ||+|.++|+.|++.|. +|+++|++. .+.+.+.+.+.+..+. .++
T Consensus 29 l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~----~~v 103 (249)
T 1jw9_B 29 LKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPH----IAI 103 (249)
T ss_dssp HHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT----SEE
T ss_pred HhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCC----cEE
Confidence 34688999996 6999999999999998 999999987 7888888888765432 367
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcccCCccEEEEccC
Q 022369 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG 157 (298)
Q Consensus 123 ~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag 157 (298)
..+..++++ +.+.+++ .+.|++|++.+
T Consensus 104 ~~~~~~~~~-~~~~~~~-------~~~DvVi~~~d 130 (249)
T 1jw9_B 104 TPVNALLDD-AELAALI-------AEHDLVLDCTD 130 (249)
T ss_dssp EEECSCCCH-HHHHHHH-------HTSSEEEECCS
T ss_pred EEEeccCCH-hHHHHHH-------hCCCEEEEeCC
Confidence 777777763 3333332 26899998764
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.76 E-value=8.1e-05 Score=60.18 Aligned_cols=78 Identities=14% Similarity=0.091 Sum_probs=58.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++.++.++|.| .|.+|..+|+.|.+. |++|+++++++++.+.+.+. .+.++..|.++++.+.++
T Consensus 36 ~~~~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~------------g~~~~~gd~~~~~~l~~~-- 100 (183)
T 3c85_A 36 NPGHAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE------------GRNVISGDATDPDFWERI-- 100 (183)
T ss_dssp CCTTCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT------------TCCEEECCTTCHHHHHTB--
T ss_pred CCCCCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC------------CCCEEEcCCCCHHHHHhc--
Confidence 45567788888 589999999999999 99999999998877654311 244677899988754321
Q ss_pred HHhcccCCccEEEEccC
Q 022369 141 AWNGRLGPLHVLINNAG 157 (298)
Q Consensus 141 ~~~~~~g~idilVnnag 157 (298)
....+.|++|.+.+
T Consensus 101 ---~~~~~ad~vi~~~~ 114 (183)
T 3c85_A 101 ---LDTGHVKLVLLAMP 114 (183)
T ss_dssp ---CSCCCCCEEEECCS
T ss_pred ---cCCCCCCEEEEeCC
Confidence 02346899998766
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=3.8e-05 Score=60.46 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=57.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+..++.++|.|+ |.+|..+|+.|.+.|++|++++|++++++.+.+ . .....+..|.++.+.+.+.
T Consensus 16 ~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~-------~----~g~~~~~~d~~~~~~l~~~--- 80 (155)
T 2g1u_A 16 KQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFHRLNS-------E----FSGFTVVGDAAEFETLKEC--- 80 (155)
T ss_dssp -CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT-------T----CCSEEEESCTTSHHHHHTT---
T ss_pred ccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh-------c----CCCcEEEecCCCHHHHHHc---
Confidence 445688999986 999999999999999999999999887654310 0 1244667888886644321
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
...+.|++|.+.+.
T Consensus 81 ---~~~~ad~Vi~~~~~ 94 (155)
T 2g1u_A 81 ---GMEKADMVFAFTND 94 (155)
T ss_dssp ---TGGGCSEEEECSSC
T ss_pred ---CcccCCEEEEEeCC
Confidence 12368999998773
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.74 E-value=8.5e-05 Score=67.05 Aligned_cols=76 Identities=17% Similarity=0.249 Sum_probs=57.1
Q ss_pred CCCCCC--EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 61 PPVNDL--TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 61 ~~~~~k--~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
++++|+ .|+|.|| |++|+.+|+.|++ ..+|.+++|+.++++.+. ..+..+.+|++|.+++.++
T Consensus 10 ~~~~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~-------------~~~~~~~~d~~d~~~l~~~ 74 (365)
T 3abi_A 10 HHIEGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK-------------EFATPLKVDASNFDKLVEV 74 (365)
T ss_dssp ------CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT-------------TTSEEEECCTTCHHHHHHH
T ss_pred ccccCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh-------------ccCCcEEEecCCHHHHHHH
Confidence 344444 5888898 9999999999976 479999999988776652 1456678999999988777
Q ss_pred HHHHhcccCCccEEEEccCC
Q 022369 139 SEAWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~ 158 (298)
++ +.|++||+++.
T Consensus 75 ~~-------~~DvVi~~~p~ 87 (365)
T 3abi_A 75 MK-------EFELVIGALPG 87 (365)
T ss_dssp HT-------TCSEEEECCCG
T ss_pred Hh-------CCCEEEEecCC
Confidence 65 57999999875
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0001 Score=65.95 Aligned_cols=78 Identities=9% Similarity=0.084 Sum_probs=55.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+||++++|...++.+...|++|+.+++++++++.+.+ +. .. .+ .|..+ +..+.+.++
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~-lG---------a~-~v--i~~~~--~~~~~~~~~- 213 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKK-MG---------AD-IV--LNHKE--SLLNQFKTQ- 213 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHH-HT---------CS-EE--ECTTS--CHHHHHHHH-
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cC---------Cc-EE--EECCc--cHHHHHHHh-
Confidence 57899999999999999999999999999999999887766543 21 11 12 23332 233333333
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
..+.+|++++|+|.
T Consensus 214 -~~~g~Dvv~d~~g~ 227 (346)
T 3fbg_A 214 -GIELVDYVFCTFNT 227 (346)
T ss_dssp -TCCCEEEEEESSCH
T ss_pred -CCCCccEEEECCCc
Confidence 22469999999884
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.71 E-value=4.5e-05 Score=66.85 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=38.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.|++++|+||++|+|...++.+...|++|+.+++++++++.+
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~ 166 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP 166 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 478999999999999999999999999999999998887655
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00061 Score=60.44 Aligned_cols=117 Identities=9% Similarity=0.070 Sum_probs=71.5
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
..++||||+|.+|..++..|+.+| ..|++++++++ +....++.... ....+.. +.+..+..+.+
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~----~~~~v~~----~~~t~d~~~al---- 74 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMD----TGAVVRG----FLGQQQLEAAL---- 74 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSC----SSCEEEE----EESHHHHHHHH----
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhccc----ccceEEE----EeCCCCHHHHc----
Confidence 469999999999999999999998 78999998876 32333333211 0112222 22333443332
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCC
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSV 208 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~ 208 (298)
.+.|++|++||..... ..+. .+.+..|+-++..+.+.+..+- ..+.|+++|..
T Consensus 75 ---~gaDvVi~~ag~~~~~---g~~r---~dl~~~N~~~~~~i~~~i~~~~---p~~~viv~SNP 127 (326)
T 1smk_A 75 ---TGMDLIIVPAGVPRKP---GMTR---DDLFKINAGIVKTLCEGIAKCC---PRAIVNLISNP 127 (326)
T ss_dssp ---TTCSEEEECCCCCCCS---SCCC---SHHHHHHHHHHHHHHHHHHHHC---TTSEEEECCSS
T ss_pred ---CCCCEEEEcCCcCCCC---CCCH---HHHHHHHHHHHHHHHHHHHhhC---CCeEEEEECCc
Confidence 3689999999975321 1121 2447778777777777655432 23455554443
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00099 Score=58.45 Aligned_cols=116 Identities=11% Similarity=0.005 Sum_probs=74.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC--EEEEEEc--CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA--HVVMAVR--NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~--~Vil~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.++||||+|.+|..++..|+..|. .++++|+ ++++++....++..... .. ..+.+.. | +.+.
T Consensus 2 KI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~-~~--~~~~v~~-~--~~~a-------- 67 (303)
T 1o6z_A 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIA-YD--SNTRVRQ-G--GYED-------- 67 (303)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHT-TT--CCCEEEE-C--CGGG--------
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHh-hC--CCcEEEe-C--CHHH--------
Confidence 589999999999999999998875 7999999 88777665566655432 11 1233332 2 2221
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCC
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSV 208 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~ 208 (298)
+.+.|++|+.||..... ..+ -.+.+..|+-.+..+.+.+..+ ...+.|+++|..
T Consensus 68 ---~~~aDvVi~~ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~---~p~~~viv~SNP 121 (303)
T 1o6z_A 68 ---TAGSDVVVITAGIPRQP---GQT---RIDLAGDNAPIMEDIQSSLDEH---NDDYISLTTSNP 121 (303)
T ss_dssp ---GTTCSEEEECCCCCCCT---TCC---HHHHHHHHHHHHHHHHHHHHTT---CSCCEEEECCSS
T ss_pred ---hCCCCEEEEcCCCCCCC---CCC---HHHHHHHHHHHHHHHHHHHHHH---CCCcEEEEeCCh
Confidence 24799999999975321 122 2345777877777776665443 123455555443
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00087 Score=59.09 Aligned_cols=157 Identities=12% Similarity=0.137 Sum_probs=93.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC--EEEEEEc--CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA--HVVMAVR--NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~--~Vil~~r--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.++||||+|.+|..++..|+.+|. .++++++ ++++++....++.......+ ..+.+...| | + +
T Consensus 2 KI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~--~~~~i~~~~--d--~-------l 68 (313)
T 1hye_A 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTR--SDANIYVES--D--E-------N 68 (313)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSC--CCCEEEEEE--T--T-------C
T ss_pred EEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcC--CCeEEEeCC--c--c-------h
Confidence 589999999999999999998885 6999999 77666665555554221111 122222211 0 0 1
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.+.+.+.|++|+.||..... ..+ -...+..|+-++..+.+++..+ ..+.|+++|.........-
T Consensus 69 ~~al~gaD~Vi~~Ag~~~~~---g~~---r~dl~~~N~~i~~~i~~~i~~~----~~~~vlv~SNPv~~~t~~~------ 132 (313)
T 1hye_A 69 LRIIDESDVVIITSGVPRKE---GMS---RMDLAKTNAKIVGKYAKKIAEI----CDTKIFVITNPVDVMTYKA------ 132 (313)
T ss_dssp GGGGTTCSEEEECCSCCCCT---TCC---HHHHHHHHHHHHHHHHHHHHHH----CCCEEEECSSSHHHHHHHH------
T ss_pred HHHhCCCCEEEECCCCCCCC---CCc---HHHHHHHHHHHHHHHHHHHHHh----CCeEEEEecCcHHHHHHHH------
Confidence 11234799999999975321 122 2455888888888877776553 2456666666443222100
Q ss_pred cccccCCCCcccchh-hHHHHHHHHHHHHHHc
Q 022369 223 VSGRRKYTSLMGYSG-SKLAQIKFSSILQKRL 253 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~a-sKaa~~~l~~~l~~e~ 253 (298)
.....+|....++. +..-...+...++..+
T Consensus 133 -~k~~~~p~~rviG~gt~LD~~r~~~~la~~l 163 (313)
T 1hye_A 133 -LVDSKFERNQVFGLGTHLDSLRFKVAIAKFF 163 (313)
T ss_dssp -HHHHCCCTTSEEECTTHHHHHHHHHHHHHHH
T ss_pred -HHhhCcChhcEEEeCccHHHHHHHHHHHHHh
Confidence 00112455566776 6655556666677666
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0004 Score=60.50 Aligned_cols=92 Identities=10% Similarity=0.228 Sum_probs=70.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc------------------hHHHHHHHHHHHhhcCCCCCcc
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL------------------KAANELIQKWQEEWSGKGLPLN 121 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~ 121 (298)
..++++.|+|.|+ +|+|.++|+.|++.|. ++.++|++. .|.+.+.+.+++..+. .+
T Consensus 32 ~kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~----v~ 106 (292)
T 3h8v_A 32 EKIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPD----VL 106 (292)
T ss_dssp CGGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTT----SE
T ss_pred HHHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCC----cE
Confidence 4567789999986 6999999999999997 999999876 6777777777776443 57
Q ss_pred EEEEEcCCCCHHHHHHHHHHHhcc----cCCccEEEEccC
Q 022369 122 IEAMELDLLSLDSVVRFSEAWNGR----LGPLHVLINNAG 157 (298)
Q Consensus 122 ~~~~~~D~s~~~~v~~~~~~~~~~----~g~idilVnnag 157 (298)
+..+..++++.+.++.+++.+... ..+.|++|++..
T Consensus 107 v~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D 146 (292)
T 3h8v_A 107 FEVHNYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD 146 (292)
T ss_dssp EEEECCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS
T ss_pred EEEecccCCcHHHHHHHhhhhcccccccCCCCCEEEECCc
Confidence 888888998877777776654321 136899987654
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00031 Score=63.08 Aligned_cols=83 Identities=13% Similarity=0.052 Sum_probs=60.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCE-EEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAH-VVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~-Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|++|||+|+ |++|...++.+...|++ |+.+++++++++.+. ++ . ..+..+..|-.+.+++.+.+.++
T Consensus 179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l-~--------~~~~~~~~~~~~~~~~~~~v~~~ 247 (363)
T 3m6i_A 179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEGRLKFAK-EI-C--------PEVVTHKVERLSAEESAKKIVES 247 (363)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH-HH-C--------TTCEEEECCSCCHHHHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-c--------hhcccccccccchHHHHHHHHHH
Confidence 3789999998 99999999888888997 999999988877553 32 1 24555566666666665555554
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
... ..+|++++++|.
T Consensus 248 t~g-~g~Dvvid~~g~ 262 (363)
T 3m6i_A 248 FGG-IEPAVALECTGV 262 (363)
T ss_dssp TSS-CCCSEEEECSCC
T ss_pred hCC-CCCCEEEECCCC
Confidence 332 369999999984
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00052 Score=59.14 Aligned_cols=41 Identities=17% Similarity=0.311 Sum_probs=38.8
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELI 106 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~ 106 (298)
+|.++|.|+ ||.|++++..|++.|.+|.+++|+.++.+++.
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la 158 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ 158 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 789999997 89999999999999999999999999998887
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00013 Score=63.19 Aligned_cols=76 Identities=17% Similarity=0.333 Sum_probs=57.3
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++++|+++|+|+ +|+|++++..|++.|+ +|++++|+.++.+++.+++.. ..+.... +.+.+
T Consensus 116 ~~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~--------~~~~~~~--~~~l~------ 178 (272)
T 3pwz_A 116 EPLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDH--------SRLRISR--YEALE------ 178 (272)
T ss_dssp CCCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCC--------TTEEEEC--SGGGT------
T ss_pred CCccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcc--------CCeeEee--HHHhc------
Confidence 3578999999998 6999999999999996 999999999999988877632 1233332 22111
Q ss_pred HHHhcccCCccEEEEccCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIF 159 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~ 159 (298)
. .+.|++||+.+..
T Consensus 179 ----~--~~~DivInaTp~g 192 (272)
T 3pwz_A 179 ----G--QSFDIVVNATSAS 192 (272)
T ss_dssp ----T--CCCSEEEECSSGG
T ss_pred ----c--cCCCEEEECCCCC
Confidence 1 3689999997654
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=9e-05 Score=66.18 Aligned_cols=77 Identities=18% Similarity=0.177 Sum_probs=54.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|+++||+|| +++|...++.+...|+ +|+.+++++++++.+.+ + . +. ..|..+.+ +.+.+.++
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~-l-a--------~~----v~~~~~~~-~~~~~~~~ 227 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFARP-Y-A--------DR----LVNPLEED-LLEVVRRV 227 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTT-T-C--------SE----EECTTTSC-HHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH-h-H--------Hh----ccCcCccC-HHHHHHHh
Confidence 5889999999 9999999998888999 99999999777654321 1 1 11 23554432 33333443
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
. -+.+|++|+++|.
T Consensus 228 ~--~~g~D~vid~~g~ 241 (343)
T 2dq4_A 228 T--GSGVEVLLEFSGN 241 (343)
T ss_dssp H--SSCEEEEEECSCC
T ss_pred c--CCCCCEEEECCCC
Confidence 3 2369999999984
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00012 Score=64.23 Aligned_cols=96 Identities=16% Similarity=0.163 Sum_probs=61.3
Q ss_pred CCCCE-EEEeCCCC-----------------c-hHHHHHHHHHHcCCEEEEEEcCchHHHH---------HHHHHHHhhc
Q 022369 63 VNDLT-CIVTGSTS-----------------G-IGREIARQLAESGAHVVMAVRNLKAANE---------LIQKWQEEWS 114 (298)
Q Consensus 63 ~~~k~-vlITGas~-----------------G-IG~~~a~~la~~G~~Vil~~r~~~~~~~---------~~~~~~~~~~ 114 (298)
+.||. ||||+|+. | .|.++|++++++|+.|+++.+... +.. ..+.+..
T Consensus 34 l~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~s-l~p~~r~~~~~~~~~~~~~--- 109 (313)
T 1p9o_A 34 AQGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARS-AFPYAHRFPPQTWLSALRP--- 109 (313)
T ss_dssp HTTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTS-CCTTGGGSCHHHHHHHCEE---
T ss_pred hcCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCC-cCcchhccCccchhhhhcc---
Confidence 45677 99998876 7 999999999999999999988532 111 0111000
Q ss_pred CCCCCccEEEEEcCCCCHHHHHHHHHHH------------------------------hcccCCccEEEEccCCCCCC
Q 022369 115 GKGLPLNIEAMELDLLSLDSVVRFSEAW------------------------------NGRLGPLHVLINNAGIFSIG 162 (298)
Q Consensus 115 ~~~~~~~~~~~~~D~s~~~~v~~~~~~~------------------------------~~~~g~idilVnnag~~~~~ 162 (298)
....+..+..+.+|+...+++.+.+.+. .+.+++.|++|.+|+++-..
T Consensus 110 ~~~~~~~~~~i~v~v~sa~~m~~av~~~~~~~~~~~l~~i~f~tv~eyl~~L~~~~~~l~~~~~~di~i~aAAVsDf~ 187 (313)
T 1p9o_A 110 SGPALSGLLSLEAEENALPGFAEALRSYQEAAAAGTFLVVEFTTLADYLHLLQAAAQALNPLGPSAMFYLAAAVSDFY 187 (313)
T ss_dssp CCC-CCSEEEEEEETTTSTTHHHHHHHHHHHHHHTCEEEEEECBHHHHHHHHHHHHHHHGGGGGGEEEEECSBCCSEE
T ss_pred ccccccccceeeeccccHHHHHHHHHHHhhhhccccceeeccccHHHHHHHHHHhhHHhhccCCCCEEEECCchhhcc
Confidence 0000113445666666666555555433 24467899999999997544
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00099 Score=59.55 Aligned_cols=81 Identities=19% Similarity=0.093 Sum_probs=52.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCC-HHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLS-LDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~-~~~v~~~~~~~ 142 (298)
.|+++||+|+ +++|...++.+...|++|+++++++++++.+. ++ +.. .. .|..+ .+..+++.+..
T Consensus 168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l---------Ga~-~~--~~~~~~~~~~~~i~~~~ 233 (352)
T 1e3j_A 168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NC---------GAD-VT--LVVDPAKEEESSIIERI 233 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HT---------TCS-EE--EECCTTTSCHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-Hh---------CCC-EE--EcCcccccHHHHHHHHh
Confidence 4789999997 89999999888889999999999988776542 21 112 12 23332 22222222222
Q ss_pred hc-ccCCccEEEEccCC
Q 022369 143 NG-RLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~-~~g~idilVnnag~ 158 (298)
.. .-+.+|++|+++|.
T Consensus 234 ~~~~g~g~D~vid~~g~ 250 (352)
T 1e3j_A 234 RSAIGDLPNVTIDCSGN 250 (352)
T ss_dssp HHHSSSCCSEEEECSCC
T ss_pred ccccCCCCCEEEECCCC
Confidence 10 01369999999984
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00024 Score=61.75 Aligned_cols=45 Identities=24% Similarity=0.462 Sum_probs=39.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQ 107 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~ 107 (298)
++++|.++|.|+ ||.|++++..|++.|+ +|.+++|+.++.+++.+
T Consensus 119 ~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~ 164 (282)
T 3fbt_A 119 EIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYG 164 (282)
T ss_dssp CCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCT
T ss_pred CccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 467899999998 5999999999999998 99999999988777643
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.46 E-value=7.8e-05 Score=57.89 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=39.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~ 109 (298)
+++++|.|+ |++|..+++.|.+.|++|++++|++++.+++.+++
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~ 64 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY 64 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh
Confidence 689999996 99999999999999999999999999888776654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00048 Score=57.25 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=56.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
.++|.|+ |.+|..+|+.|.++|++|++++++++..+.+.++. .+.++..|.++++.++++ ..
T Consensus 2 ~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-----------~~~~i~gd~~~~~~l~~a------~i 63 (218)
T 3l4b_C 2 KVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-----------KATIIHGDGSHKEILRDA------EV 63 (218)
T ss_dssp CEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-----------SSEEEESCTTSHHHHHHH------TC
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-----------CCeEEEcCCCCHHHHHhc------Cc
Confidence 4889996 88999999999999999999999988877654331 356788999998766543 12
Q ss_pred CCccEEEEccC
Q 022369 147 GPLHVLINNAG 157 (298)
Q Consensus 147 g~idilVnnag 157 (298)
.+.|++|.+.+
T Consensus 64 ~~ad~vi~~~~ 74 (218)
T 3l4b_C 64 SKNDVVVILTP 74 (218)
T ss_dssp CTTCEEEECCS
T ss_pred ccCCEEEEecC
Confidence 36788887655
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00061 Score=61.42 Aligned_cols=79 Identities=13% Similarity=0.144 Sum_probs=54.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCC-HHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLS-LDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~-~~~v~~~~~~ 141 (298)
.|++|||+|+ +++|...++.+...|+ +|+.+++++++++.+. ++. ... + .|..+ .+++.+.+.+
T Consensus 190 ~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~-~lG---------a~~-v--i~~~~~~~~~~~~v~~ 255 (373)
T 2fzw_A 190 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAK-EFG---------ATE-C--INPQDFSKPIQEVLIE 255 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HHT---------CSE-E--ECGGGCSSCHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HcC---------Cce-E--eccccccccHHHHHHH
Confidence 4789999996 8999999988888899 8999999988877653 321 111 1 34432 1233344444
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
+.. +.+|++|+++|.
T Consensus 256 ~~~--~g~D~vid~~g~ 270 (373)
T 2fzw_A 256 MTD--GGVDYSFECIGN 270 (373)
T ss_dssp HTT--SCBSEEEECSCC
T ss_pred HhC--CCCCEEEECCCc
Confidence 433 479999999985
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00013 Score=64.66 Aligned_cols=75 Identities=17% Similarity=0.142 Sum_probs=49.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
++||+||++|+|...++.+...|++|+.+++++++++.+. ++ |... . +|..+.+ .+.++++. .
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~-~l---------Ga~~-~--i~~~~~~--~~~~~~~~--~ 214 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-VL---------GAKE-V--LAREDVM--AERIRPLD--K 214 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-HT---------TCSE-E--EECC-----------CC--S
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-Hc---------CCcE-E--EecCCcH--HHHHHHhc--C
Confidence 7999999999999999988889999999999988876552 22 1121 1 2444432 12223222 1
Q ss_pred CCccEEEEccCC
Q 022369 147 GPLHVLINNAGI 158 (298)
Q Consensus 147 g~idilVnnag~ 158 (298)
+.+|++|+++|.
T Consensus 215 ~~~d~vid~~g~ 226 (328)
T 1xa0_A 215 QRWAAAVDPVGG 226 (328)
T ss_dssp CCEEEEEECSTT
T ss_pred CcccEEEECCcH
Confidence 369999999984
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00099 Score=60.11 Aligned_cols=76 Identities=18% Similarity=0.272 Sum_probs=51.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|++++|+||++++|...++.+...|++|+.++ +.++.+.+ +++ |... + +|..+.+-. +++.
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~-~~l---------Ga~~-v--~~~~~~~~~----~~~~ 244 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELV-RKL---------GADD-V--IDYKSGSVE----EQLK 244 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHH-HHT---------TCSE-E--EETTSSCHH----HHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHH-HHc---------CCCE-E--EECCchHHH----HHHh
Confidence 578999999999999999998888999999888 45555433 222 1121 1 244443322 2333
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
+. +.+|++|+|+|.
T Consensus 245 ~~-~g~D~vid~~g~ 258 (375)
T 2vn8_A 245 SL-KPFDFILDNVGG 258 (375)
T ss_dssp TS-CCBSEEEESSCT
T ss_pred hc-CCCCEEEECCCC
Confidence 32 579999999985
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00066 Score=61.03 Aligned_cols=78 Identities=15% Similarity=0.138 Sum_probs=54.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+| ++++|...+..+...|++|+++++++++++.+ +++. ... + .| .+.+++.+.+.++.
T Consensus 189 ~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~-~~lG---------a~~-v--i~-~~~~~~~~~v~~~~ 253 (363)
T 3uog_A 189 AGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSREKLDRA-FALG---------ADH-G--IN-RLEEDWVERVYALT 253 (363)
T ss_dssp TTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHHT---------CSE-E--EE-TTTSCHHHHHHHHH
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCchhHHHH-HHcC---------CCE-E--Ec-CCcccHHHHHHHHh
Confidence 478999999 89999999998888999999999998887764 2221 111 2 24 33233333334333
Q ss_pred cccCCccEEEEccC
Q 022369 144 GRLGPLHVLINNAG 157 (298)
Q Consensus 144 ~~~g~idilVnnag 157 (298)
.. ..+|++++++|
T Consensus 254 ~g-~g~D~vid~~g 266 (363)
T 3uog_A 254 GD-RGADHILEIAG 266 (363)
T ss_dssp TT-CCEEEEEEETT
T ss_pred CC-CCceEEEECCC
Confidence 22 26999999998
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00047 Score=63.09 Aligned_cols=47 Identities=30% Similarity=0.538 Sum_probs=41.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~ 109 (298)
++.|++++|.|+ |++|..+++.+...|+ +|++++|+.++.+++.+++
T Consensus 164 ~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~ 211 (404)
T 1gpj_A 164 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDL 211 (404)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHH
T ss_pred cccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence 467999999998 9999999999999999 9999999998877666554
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0012 Score=59.84 Aligned_cols=80 Identities=9% Similarity=0.038 Sum_probs=54.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcC-CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCC--CHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESG-AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLL--SLDSVVRFSE 140 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G-~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s--~~~~v~~~~~ 140 (298)
.|++|||+| ++++|...++.+...| ++|+.+++++++++.+. ++ |.. .++ |.. +.+++.+.+.
T Consensus 195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~-~l---------Ga~-~vi--~~~~~~~~~~~~~v~ 260 (380)
T 1vj0_A 195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EI---------GAD-LTL--NRRETSVEERRKAIM 260 (380)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HT---------TCS-EEE--ETTTSCHHHHHHHHH
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH-Hc---------CCc-EEE--eccccCcchHHHHHH
Confidence 478999999 8999999998888899 59999999988776543 21 111 222 333 2444444444
Q ss_pred HHhcccCCccEEEEccCC
Q 022369 141 AWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~ 158 (298)
++... ..+|++|+++|.
T Consensus 261 ~~~~g-~g~Dvvid~~g~ 277 (380)
T 1vj0_A 261 DITHG-RGADFILEATGD 277 (380)
T ss_dssp HHTTT-SCEEEEEECSSC
T ss_pred HHhCC-CCCcEEEECCCC
Confidence 43321 159999999984
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0001 Score=63.89 Aligned_cols=43 Identities=21% Similarity=0.326 Sum_probs=38.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANEL 105 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~ 105 (298)
++++|+++|+|+ ||+|++++..|++.|+ +|++++|+.++.+++
T Consensus 114 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l 157 (277)
T 3don_A 114 GIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNW 157 (277)
T ss_dssp TGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTC
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 467899999997 6999999999999999 999999998876655
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00077 Score=61.56 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=38.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.+.+++|+|+|+ |.+|+.+++.+...|++|++++++.++++..
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~ 211 (401)
T 1x13_A 169 KVPPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPEVKEQV 211 (401)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGGGHHHH
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH
Confidence 367899999997 8999999999999999999999999887765
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0011 Score=56.60 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=59.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc-------------------hHHHHHHHHHHHhhcCCCCCccE
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL-------------------KAANELIQKWQEEWSGKGLPLNI 122 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 122 (298)
+++++|+|.|+ ||+|.++++.|+..|. ++.++|++. .+.+.+.+.+++..+. .++
T Consensus 26 l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~----~~v 100 (251)
T 1zud_1 26 LLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPD----IQL 100 (251)
T ss_dssp HHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTT----SEE
T ss_pred HhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCC----CEE
Confidence 44688999998 6799999999999998 888887643 6777888887775432 467
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcccCCccEEEEccC
Q 022369 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG 157 (298)
Q Consensus 123 ~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag 157 (298)
..+..+++. +.+.++++ +.|++|++..
T Consensus 101 ~~~~~~~~~-~~~~~~~~-------~~DvVi~~~d 127 (251)
T 1zud_1 101 TALQQRLTG-EALKDAVA-------RADVVLDCTD 127 (251)
T ss_dssp EEECSCCCH-HHHHHHHH-------HCSEEEECCS
T ss_pred EEEeccCCH-HHHHHHHh-------cCCEEEECCC
Confidence 776666654 34444433 4799998754
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0006 Score=61.52 Aligned_cols=79 Identities=13% Similarity=0.174 Sum_probs=54.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCC-HHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLS-LDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~-~~~v~~~~~~ 141 (298)
.|++|||+|+ +++|...++.+...|+ +|+.+++++++++.+. ++ |.. .+ +|..+ .+++.+.+.+
T Consensus 192 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~l---------Ga~-~v--i~~~~~~~~~~~~~~~ 257 (374)
T 1cdo_A 192 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK-VF---------GAT-DF--VNPNDHSEPISQVLSK 257 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---------TCC-EE--ECGGGCSSCHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-Hh---------CCc-eE--EeccccchhHHHHHHH
Confidence 4789999996 8999999988888999 8999999988877553 22 111 11 34443 1234444444
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
+.. +.+|++|+++|.
T Consensus 258 ~~~--~g~D~vid~~g~ 272 (374)
T 1cdo_A 258 MTN--GGVDFSLECVGN 272 (374)
T ss_dssp HHT--SCBSEEEECSCC
T ss_pred HhC--CCCCEEEECCCC
Confidence 433 479999999985
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0028 Score=56.71 Aligned_cols=79 Identities=20% Similarity=0.151 Sum_probs=52.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCC--CHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLL--SLDSVVRFSE 140 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s--~~~~v~~~~~ 140 (298)
.|++|||+|+ +++|...++.+...|+ +|+.+++++++++.+. ++ |.. .+ .|.. +.++..+.+.
T Consensus 171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l---------Ga~-~v--i~~~~~~~~~~~~~i~ 236 (356)
T 1pl8_A 171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EI---------GAD-LV--LQISKESPQEIARKVE 236 (356)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT---------TCS-EE--EECSSCCHHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh---------CCC-EE--EcCcccccchHHHHHH
Confidence 4789999996 8999999888888899 9999999988766542 22 112 12 2443 2233333333
Q ss_pred HHhcccCCccEEEEccCC
Q 022369 141 AWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~ 158 (298)
+... +.+|++|+++|.
T Consensus 237 ~~~~--~g~D~vid~~g~ 252 (356)
T 1pl8_A 237 GQLG--CKPEVTIECTGA 252 (356)
T ss_dssp HHHT--SCCSEEEECSCC
T ss_pred HHhC--CCCCEEEECCCC
Confidence 3322 479999999984
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0015 Score=57.92 Aligned_cols=92 Identities=8% Similarity=0.133 Sum_probs=60.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc-------------------hHHHHHHHHHHHhhcCCCCCc
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL-------------------KAANELIQKWQEEWSGKGLPL 120 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~ 120 (298)
..++++.|+|.|+ ||+|.++|+.|+..|. ++.++|++. .+.+.+.+.+++..+. .
T Consensus 30 ~kL~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~----v 104 (340)
T 3rui_A 30 DIIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL----M 104 (340)
T ss_dssp HHHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTT----C
T ss_pred HHHhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCC----C
Confidence 4567889999987 5999999999999998 899998753 5677777777776543 4
Q ss_pred cEEEEEcCCC-------CHHHHHHHHHHHhcccCCccEEEEccC
Q 022369 121 NIEAMELDLL-------SLDSVVRFSEAWNGRLGPLHVLINNAG 157 (298)
Q Consensus 121 ~~~~~~~D~s-------~~~~v~~~~~~~~~~~g~idilVnnag 157 (298)
++..+..++. +++....-.+.+.+.+.+.|++|++..
T Consensus 105 ~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tD 148 (340)
T 3rui_A 105 DATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD 148 (340)
T ss_dssp EEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCS
T ss_pred EEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCC
Confidence 6677665552 221111111111222235799988765
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0027 Score=57.20 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=39.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELI 106 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~ 106 (298)
.+.+++|+|.|+ |.+|..+|+.+...|++|++++|+.++++.+.
T Consensus 181 ~v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~ 224 (381)
T 3p2y_A 181 TVKPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVR 224 (381)
T ss_dssp EECCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH
T ss_pred CcCCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 457789999999 69999999999999999999999999887764
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00073 Score=60.94 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=54.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCC-HHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLS-LDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~-~~~v~~~~~~ 141 (298)
.|++|||+|+ +++|...++.+...|+ +|+.+++++++++.+. ++ |.. .+ +|..+ .+++.+.+.+
T Consensus 191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~-~l---------Ga~-~v--i~~~~~~~~~~~~~~~ 256 (374)
T 2jhf_A 191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK-EV---------GAT-EC--VNPQDYKKPIQEVLTE 256 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---------TCS-EE--ECGGGCSSCHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hh---------CCc-eE--ecccccchhHHHHHHH
Confidence 4789999995 8999999998888999 8999999988877552 22 111 11 34433 1234444444
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
+.. +.+|++|+++|.
T Consensus 257 ~~~--~g~D~vid~~g~ 271 (374)
T 2jhf_A 257 MSN--GGVDFSFEVIGR 271 (374)
T ss_dssp HTT--SCBSEEEECSCC
T ss_pred HhC--CCCcEEEECCCC
Confidence 433 479999999985
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.001 Score=59.70 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=34.4
Q ss_pred CC-CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHH
Q 022369 64 ND-LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAAN 103 (298)
Q Consensus 64 ~~-k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~ 103 (298)
.| ++|||+||++++|...++.+...|++|+.++++.++++
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~ 206 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLD 206 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHH
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccH
Confidence 47 89999999999999988888788999999988776643
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0019 Score=57.36 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=53.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+|+ +++|...++.+...|++|+.+++++++++.+. ++ |.... .|..+.+..+++.+
T Consensus 166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~l---------Ga~~~---i~~~~~~~~~~~~~--- 228 (340)
T 3s2e_A 166 PGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR-RL---------GAEVA---VNARDTDPAAWLQK--- 228 (340)
T ss_dssp TTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HT---------TCSEE---EETTTSCHHHHHHH---
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-Hc---------CCCEE---EeCCCcCHHHHHHH---
Confidence 4789999997 89999999888889999999999988877542 22 11221 34444333333332
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
..|.+|++|.++|.
T Consensus 229 -~~g~~d~vid~~g~ 242 (340)
T 3s2e_A 229 -EIGGAHGVLVTAVS 242 (340)
T ss_dssp -HHSSEEEEEESSCC
T ss_pred -hCCCCCEEEEeCCC
Confidence 23579999999873
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0015 Score=58.50 Aligned_cols=78 Identities=13% Similarity=0.060 Sum_probs=53.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|++|||+|| +++|...++.+... |++|+.+++++++++.+. ++ |... + .|..+. +.+.+.++
T Consensus 186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~-~l---------Ga~~-v--i~~~~~--~~~~v~~~ 249 (359)
T 1h2b_A 186 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE-RL---------GADH-V--VDARRD--PVKQVMEL 249 (359)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH-HT---------TCSE-E--EETTSC--HHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH-Hh---------CCCE-E--Eeccch--HHHHHHHH
Confidence 4789999999 89999998888788 999999999988776553 22 1111 1 344443 33333443
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
... ..+|++|+++|.
T Consensus 250 ~~g-~g~Dvvid~~G~ 264 (359)
T 1h2b_A 250 TRG-RGVNVAMDFVGS 264 (359)
T ss_dssp TTT-CCEEEEEESSCC
T ss_pred hCC-CCCcEEEECCCC
Confidence 321 269999999985
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0012 Score=59.61 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=53.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|.+|||+|+ +++|...++.+...|++|+.+++++++++.+.+ +. .. . .+|..+.+.+ +++.
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~-lG---------a~-~--vi~~~~~~~~----~~~~ 255 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA-LG---------AD-E--VVNSRNADEM----AAHL 255 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-HT---------CS-E--EEETTCHHHH----HTTT
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC---------Cc-E--EeccccHHHH----HHhh
Confidence 4789999998 899999998888899999999999988776532 21 11 1 2355555433 2222
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
+.+|++|+++|.
T Consensus 256 ---~g~Dvvid~~g~ 267 (369)
T 1uuf_A 256 ---KSFDFILNTVAA 267 (369)
T ss_dssp ---TCEEEEEECCSS
T ss_pred ---cCCCEEEECCCC
Confidence 479999999985
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0079 Score=53.29 Aligned_cols=123 Identities=11% Similarity=0.000 Sum_probs=76.4
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
.....+.+.|+|+ |.+|.++|..|+.+|. .|+++|+++++++....+++....-.. ....+..+ |.+
T Consensus 15 ~~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~---~~~i~~~~--d~~----- 83 (331)
T 4aj2_A 15 EQVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLK---TPKIVSSK--DYS----- 83 (331)
T ss_dssp --CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCS---CCEEEECS--SGG-----
T ss_pred ccCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccC---CCeEEEcC--CHH-----
Confidence 3455678999997 8999999999999997 899999999999888888876421110 11222221 221
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM 209 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~ 209 (298)
.+.+-|++|.+||.... ..++. .+.++.|.--...+.+.+..+ ...+.++++|...
T Consensus 84 ------~~~~aDiVvi~aG~~~k---pG~tR---~dL~~~N~~I~~~i~~~i~~~---~p~a~vlvvtNPv 139 (331)
T 4aj2_A 84 ------VTANSKLVIITAGARQQ---EGESR---LNLVQRNVNIFKFIIPNVVKY---SPQCKLLIVSNPV 139 (331)
T ss_dssp ------GGTTEEEEEECCSCCCC---TTCCG---GGGHHHHHHHHHHHHHHHHHH---CTTCEEEECSSSH
T ss_pred ------HhCCCCEEEEccCCCCC---CCccH---HHHHHHHHHHHHHHHHHHHHH---CCCeEEEEecChH
Confidence 13478999999998532 12222 234555544333344433332 2356777777654
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0015 Score=58.34 Aligned_cols=120 Identities=12% Similarity=0.069 Sum_probs=72.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
-+.++.+.|+|++|.+|..+|..++.+|. +|+++|+++++++....+++... - ...++.+ . +|.. +.
T Consensus 5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~-~--~~~~i~~-t---~d~~---~a- 73 (343)
T 3fi9_A 5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG-F--EGLNLTF-T---SDIK---EA- 73 (343)
T ss_dssp CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC-C--TTCCCEE-E---SCHH---HH-
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc-C--CCCceEE-c---CCHH---HH-
Confidence 34567899999999999999999999984 89999999998888777776531 1 0112221 1 1221 11
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCe-EEEEcCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSR-IINVNSV 208 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~-Iv~isS~ 208 (298)
+.+-|++|.+||.... + .++ -.+.++.|.-- .+.+.+.+.+. ..+. |+++|..
T Consensus 74 ------l~dADvVvitaG~p~k-p--G~~---R~dLl~~N~~I----~~~i~~~i~~~~p~a~~vlvvsNP 128 (343)
T 3fi9_A 74 ------LTDAKYIVSSGGAPRK-E--GMT---REDLLKGNAEI----AAQLGKDIKSYCPDCKHVIIIFNP 128 (343)
T ss_dssp ------HTTEEEEEECCC----------C---HHHHHHHHHHH----HHHHHHHHHHHCTTCCEEEECSSS
T ss_pred ------hCCCCEEEEccCCCCC-C--CCC---HHHHHHHHHHH----HHHHHHHHHHhccCcEEEEEecCc
Confidence 1368999999997431 1 122 23445555543 34444444443 2453 6677654
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00055 Score=61.45 Aligned_cols=74 Identities=15% Similarity=0.186 Sum_probs=52.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH-HHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSL-DSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~-~~v~~~~~~~ 142 (298)
.|+++||+|+ +++|...++.+...|++|+.+++++++++.+.+ +. ... + .|..+. + +.+++
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~-lG---------a~~-v--~~~~~~~~----~~~~~ 240 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMK-MG---------ADH-Y--IATLEEGD----WGEKY 240 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-HT---------CSE-E--EEGGGTSC----HHHHS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-cC---------CCE-E--EcCcCchH----HHHHh
Confidence 4789999999 999999998888899999999999888776532 21 111 2 233332 2 12222
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
. +.+|++|+++|.
T Consensus 241 ~---~~~D~vid~~g~ 253 (360)
T 1piw_A 241 F---DTFDLIVVCASS 253 (360)
T ss_dssp C---SCEEEEEECCSC
T ss_pred h---cCCCEEEECCCC
Confidence 2 579999999985
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.015 Score=51.41 Aligned_cols=118 Identities=10% Similarity=-0.038 Sum_probs=75.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.+.+.|+|+ |.+|.++|..|+..|. .|+++|+++++++....+++...+-.+ ..+.....| .
T Consensus 5 ~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~--~~v~i~~~~---~---------- 68 (326)
T 3pqe_A 5 VNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAP--QPVKTSYGT---Y---------- 68 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSS--SCCEEEEEC---G----------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhcccccc--CCeEEEeCc---H----------
Confidence 356889996 9999999999999997 899999999999888777776433211 123333222 1
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVM 209 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~ 209 (298)
+.+.+-|++|.+||.... + ..+ -.+.++.|.--.-.+.+ .+.+. ..+.++++|...
T Consensus 69 -~a~~~aDvVvi~ag~p~k-p--G~~---R~dL~~~N~~Iv~~i~~----~I~~~~p~a~vlvvtNPv 125 (326)
T 3pqe_A 69 -EDCKDADIVCICAGANQK-P--GET---RLELVEKNLKIFKGIVS----EVMASGFDGIFLVATNPV 125 (326)
T ss_dssp -GGGTTCSEEEECCSCCCC-T--TCC---HHHHHHHHHHHHHHHHH----HHHHTTCCSEEEECSSSH
T ss_pred -HHhCCCCEEEEecccCCC-C--Ccc---HHHHHHHHHHHHHHHHH----HHHHhcCCeEEEEcCChH
Confidence 123478999999997431 1 122 23345556544444444 44332 356788777654
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0012 Score=59.67 Aligned_cols=79 Identities=16% Similarity=0.109 Sum_probs=54.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCC-HHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLS-LDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~-~~~v~~~~~~ 141 (298)
.|++|||+|+ +++|...++.+...|+ +|+.+++++++++.+. ++ |... + .|..+ .+++.+.+.+
T Consensus 195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l---------Ga~~-v--i~~~~~~~~~~~~v~~ 260 (376)
T 1e3i_A 195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK-AL---------GATD-C--LNPRELDKPVQDVITE 260 (376)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---------TCSE-E--ECGGGCSSCHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-Hh---------CCcE-E--EccccccchHHHHHHH
Confidence 4789999996 8999999988888899 8999999988877552 22 1111 1 34432 1223333444
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
+.. +.+|++|+++|.
T Consensus 261 ~~~--~g~Dvvid~~G~ 275 (376)
T 1e3i_A 261 LTA--GGVDYSLDCAGT 275 (376)
T ss_dssp HHT--SCBSEEEESSCC
T ss_pred HhC--CCccEEEECCCC
Confidence 433 479999999985
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0015 Score=58.73 Aligned_cols=78 Identities=10% Similarity=0.141 Sum_probs=51.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHH-cCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAE-SGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~-~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|+++||+||++++|...++.+.. .|++|+.+++++++++.+. ++ |... + .|..+ ++.+.+.++
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~-~l---------Gad~-v--i~~~~--~~~~~v~~~ 235 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK-SL---------GAHH-V--IDHSK--PLAAEVAAL 235 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH-HT---------TCSE-E--ECTTS--CHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH-Hc---------CCCE-E--EeCCC--CHHHHHHHh
Confidence 578999999999999887765554 4889999999988776552 21 1121 1 24333 222222322
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
..+.+|++++++|.
T Consensus 236 --~~~g~Dvvid~~g~ 249 (363)
T 4dvj_A 236 --GLGAPAFVFSTTHT 249 (363)
T ss_dssp --CSCCEEEEEECSCH
T ss_pred --cCCCceEEEECCCc
Confidence 22479999999884
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0025 Score=60.72 Aligned_cols=94 Identities=9% Similarity=0.152 Sum_probs=63.7
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc-------------------hHHHHHHHHHHHhhcCCCCC
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL-------------------KAANELIQKWQEEWSGKGLP 119 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~-------------------~~~~~~~~~~~~~~~~~~~~ 119 (298)
...++++.|+|.|+ ||+|.++|+.|+..|. ++.++|++. .+.+.+.+.+++..+.
T Consensus 321 ~ekL~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~---- 395 (615)
T 4gsl_A 321 LDIIKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL---- 395 (615)
T ss_dssp HHHHHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTT----
T ss_pred HHHHhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCC----
Confidence 34677889999988 5999999999999998 899998754 5777788888776543
Q ss_pred ccEEEEEcCC-------CCHHHHHHHHHHHhcccCCccEEEEccCC
Q 022369 120 LNIEAMELDL-------LSLDSVVRFSEAWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 120 ~~~~~~~~D~-------s~~~~v~~~~~~~~~~~g~idilVnnag~ 158 (298)
.++..+..++ ++++....-.+.+.+.+.+.|++|++..-
T Consensus 396 V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn 441 (615)
T 4gsl_A 396 MDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDS 441 (615)
T ss_dssp CEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSS
T ss_pred cEEEEeeccccccCccccchhhhcCCHHHHHHHhhcCCEEEecCCC
Confidence 4677776655 23221111111222223368999987653
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0026 Score=58.03 Aligned_cols=79 Identities=14% Similarity=0.186 Sum_probs=53.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|++|||+|+ |++|...+..+...|+ +|+.+++++++++.+ +++. .. .+ .|..+.+-.++ +.++
T Consensus 213 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~-~~lG---------a~-~v--i~~~~~~~~~~-i~~~ 277 (404)
T 3ip1_A 213 PGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSEVRRNLA-KELG---------AD-HV--IDPTKENFVEA-VLDY 277 (404)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHHT---------CS-EE--ECTTTSCHHHH-HHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHcC---------CC-EE--EcCCCCCHHHH-HHHH
Confidence 4789999998 8999998888888999 999999998877654 2321 11 12 34444332222 2332
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
... ..+|+++.++|.
T Consensus 278 t~g-~g~D~vid~~g~ 292 (404)
T 3ip1_A 278 TNG-LGAKLFLEATGV 292 (404)
T ss_dssp TTT-CCCSEEEECSSC
T ss_pred hCC-CCCCEEEECCCC
Confidence 221 259999999985
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0039 Score=55.42 Aligned_cols=77 Identities=13% Similarity=0.098 Sum_probs=52.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHc--CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAES--GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~--G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.|++|||+|+ +++|...++.+... |++|+.+++++++++.+. ++. ... + .|..+. ...+++
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~-~lG---------a~~-v--i~~~~~---~~~~~~ 232 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSKKHRDFAL-ELG---------ADY-V--SEMKDA---ESLINK 232 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHH-HHT---------CSE-E--ECHHHH---HHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH-HhC---------CCE-E--eccccc---hHHHHH
Confidence 5789999999 89999999888888 999999999988776553 221 111 1 233220 123344
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
+.+ -..+|++|+++|.
T Consensus 233 ~~~-g~g~D~vid~~g~ 248 (344)
T 2h6e_A 233 LTD-GLGASIAIDLVGT 248 (344)
T ss_dssp HHT-TCCEEEEEESSCC
T ss_pred hhc-CCCccEEEECCCC
Confidence 433 1269999999984
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0011 Score=59.31 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=51.9
Q ss_pred CCCCEEEEeCCCCchHHHH-HHHH-HHcCCE-EEEEEcCch---HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREI-ARQL-AESGAH-VVMAVRNLK---AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~-a~~l-a~~G~~-Vil~~r~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
+.+++|||+|| |++|... ++.+ ...|++ |+.++++++ +++.+. ++ | ...+ |..+.+ +.
T Consensus 171 ~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~-~l---------G--a~~v--~~~~~~-~~ 234 (357)
T 2b5w_A 171 WDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIE-EL---------D--ATYV--DSRQTP-VE 234 (357)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHH-HT---------T--CEEE--ETTTSC-GG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHH-Hc---------C--Cccc--CCCccC-HH
Confidence 44589999999 9999998 7666 567997 999999987 766542 22 1 1222 544432 33
Q ss_pred HHHHHHhcccCCccEEEEccCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~ 158 (298)
+ +.++ . +.+|++|+++|.
T Consensus 235 ~-i~~~-~--gg~Dvvid~~g~ 252 (357)
T 2b5w_A 235 D-VPDV-Y--EQMDFIYEATGF 252 (357)
T ss_dssp G-HHHH-S--CCEEEEEECSCC
T ss_pred H-HHHh-C--CCCCEEEECCCC
Confidence 3 4444 2 479999999984
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00099 Score=55.92 Aligned_cols=72 Identities=15% Similarity=0.095 Sum_probs=54.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+.++|.|+ +.+|..+|+.|.+.|+ |++++++++.++... . .+.++..|.++++.++++
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~----~---------~~~~i~gd~~~~~~l~~a------ 67 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKVLR----S---------GANFVHGDPTRVSDLEKA------ 67 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH----T---------TCEEEESCTTCHHHHHHT------
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh----c---------CCeEEEcCCCCHHHHHhc------
Confidence 357899997 7999999999999999 999999988776553 1 367788999988755443
Q ss_pred ccCCccEEEEccC
Q 022369 145 RLGPLHVLINNAG 157 (298)
Q Consensus 145 ~~g~idilVnnag 157 (298)
...+.|.+|.+.+
T Consensus 68 ~i~~ad~vi~~~~ 80 (234)
T 2aef_A 68 NVRGARAVIVDLE 80 (234)
T ss_dssp TCTTCSEEEECCS
T ss_pred CcchhcEEEEcCC
Confidence 1235777777654
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.003 Score=56.86 Aligned_cols=79 Identities=10% Similarity=0.101 Sum_probs=53.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
-.|++|||+||++++|...++.+...|++|+.+. ++++++.+ +++ |.. .+ .|..+.+ +.+.+.++
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~-~~l---------Ga~-~v--i~~~~~~-~~~~v~~~ 227 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLA-KSR---------GAE-EV--FDYRAPN-LAQTIRTY 227 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHH-HHT---------TCS-EE--EETTSTT-HHHHHHHH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHH-HHc---------CCc-EE--EECCCch-HHHHHHHH
Confidence 4689999999999999999999888999999886 66666533 232 111 12 3444433 22333333
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
.. +++|+++.++|.
T Consensus 228 t~--g~~d~v~d~~g~ 241 (371)
T 3gqv_A 228 TK--NNLRYALDCITN 241 (371)
T ss_dssp TT--TCCCEEEESSCS
T ss_pred cc--CCccEEEECCCc
Confidence 22 359999999985
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00076 Score=60.48 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=52.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+|+ +++|...++.+...|++|+.+++++++++.+.+++ |... + .|..+.+.++ ++
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~l---------Ga~~-v--i~~~~~~~~~----~~- 241 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDL---------GADD-Y--VIGSDQAKMS----EL- 241 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTS---------CCSC-E--EETTCHHHHH----HS-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHc---------CCce-e--eccccHHHHH----Hh-
Confidence 5789999995 99999999888888999999999988776553222 1111 1 2444543332 22
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
.+.+|++|+++|.
T Consensus 242 --~~g~D~vid~~g~ 254 (357)
T 2cf5_A 242 --ADSLDYVIDTVPV 254 (357)
T ss_dssp --TTTEEEEEECCCS
T ss_pred --cCCCCEEEECCCC
Confidence 2479999999985
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.002 Score=57.98 Aligned_cols=80 Identities=20% Similarity=0.156 Sum_probs=52.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|++|||+|+ |++|...++.+...|+ +|+.+++++++.+.+ +++. ... ..|.++.+-.+. +.+.
T Consensus 182 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a-~~lG---------a~~---vi~~~~~~~~~~-i~~~ 246 (370)
T 4ej6_A 182 AGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQATKRRLA-EEVG---------ATA---TVDPSAGDVVEA-IAGP 246 (370)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCHHHHHHH-HHHT---------CSE---EECTTSSCHHHH-HHST
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHcC---------CCE---EECCCCcCHHHH-HHhh
Confidence 3789999998 8999998888888999 899999998876643 3321 111 235554432222 2221
Q ss_pred h-cccCCccEEEEccCC
Q 022369 143 N-GRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~-~~~g~idilVnnag~ 158 (298)
. ...|.+|++++++|.
T Consensus 247 ~~~~~gg~Dvvid~~G~ 263 (370)
T 4ej6_A 247 VGLVPGGVDVVIECAGV 263 (370)
T ss_dssp TSSSTTCEEEEEECSCC
T ss_pred hhccCCCCCEEEECCCC
Confidence 1 112479999999884
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0022 Score=58.31 Aligned_cols=80 Identities=19% Similarity=0.115 Sum_probs=53.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|++|||.|+ +++|...++.+...|+ +|+.+++++++++.+. ++ |. .. +|.++.+.+.+.+.++
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~-~l---------Ga--~~--i~~~~~~~~~~~v~~~ 249 (398)
T 1kol_A 185 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAK-AQ---------GF--EI--ADLSLDTPLHEQIAAL 249 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT---------TC--EE--EETTSSSCHHHHHHHH
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH-Hc---------CC--cE--EccCCcchHHHHHHHH
Confidence 4789999995 9999998887777899 7999999988776552 22 12 22 3444433222223333
Q ss_pred hcccCCccEEEEccCCC
Q 022369 143 NGRLGPLHVLINNAGIF 159 (298)
Q Consensus 143 ~~~~g~idilVnnag~~ 159 (298)
... ..+|++|.++|..
T Consensus 250 t~g-~g~Dvvid~~G~~ 265 (398)
T 1kol_A 250 LGE-PEVDCAVDAVGFE 265 (398)
T ss_dssp HSS-SCEEEEEECCCTT
T ss_pred hCC-CCCCEEEECCCCc
Confidence 221 2699999999863
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00072 Score=61.09 Aligned_cols=79 Identities=13% Similarity=0.119 Sum_probs=54.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCC-HHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLS-LDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~-~~~v~~~~~~ 141 (298)
.|++|||+|+ +++|...++.+...|+ +|+.+++++++++.+ +++ |... ..|..+ .+++.+.+.+
T Consensus 193 ~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a-~~l---------Ga~~---vi~~~~~~~~~~~~i~~ 258 (378)
T 3uko_A 193 PGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETA-KKF---------GVNE---FVNPKDHDKPIQEVIVD 258 (378)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTTHHHHH-HTT---------TCCE---EECGGGCSSCHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH-HHc---------CCcE---EEccccCchhHHHHHHH
Confidence 4788999998 9999999888888899 899999999887744 221 1121 234432 2234444444
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
+.. +.+|++|.++|.
T Consensus 259 ~~~--gg~D~vid~~g~ 273 (378)
T 3uko_A 259 LTD--GGVDYSFECIGN 273 (378)
T ss_dssp HTT--SCBSEEEECSCC
T ss_pred hcC--CCCCEEEECCCC
Confidence 433 379999999985
|
| >3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0022 Score=57.95 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=53.1
Q ss_pred CCEEEEeC-CCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTG-STSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITG-as~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
|.++||.| |++++|...++.+...|++|+.+++++++++.+.+ + |... + .|..+.+-.+++.+...
T Consensus 171 g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~~~~~~~~~~-l---------Ga~~-~--~~~~~~~~~~~v~~~t~ 237 (379)
T 3iup_A 171 GHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRKQEQADLLKA-Q---------GAVH-V--CNAASPTFMQDLTEALV 237 (379)
T ss_dssp TCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHH-T---------TCSC-E--EETTSTTHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh-C---------CCcE-E--EeCCChHHHHHHHHHhc
Confidence 67889987 89999999998888889999999999888765532 1 1111 1 23344332222222221
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
. ..+|++++++|.
T Consensus 238 ~--~g~d~v~d~~g~ 250 (379)
T 3iup_A 238 S--TGATIAFDATGG 250 (379)
T ss_dssp H--HCCCEEEESCEE
T ss_pred C--CCceEEEECCCc
Confidence 1 269999999985
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.011 Score=52.18 Aligned_cols=119 Identities=7% Similarity=0.030 Sum_probs=70.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
..++.+.|+|+ |++|.++|..|+..|. .|+++|+++++++....++....+-. ..+.....| .
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~---~~~~i~~~~---~-------- 71 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFT---SPKKIYSAE---Y-------- 71 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGS---CCCEEEECC---G--------
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhc---CCcEEEECc---H--------
Confidence 34567999996 9999999999999987 89999999999888877776543211 123333222 1
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVM 209 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~ 209 (298)
+.+.+-|++|+.||.... + . +.-.+.++.|.--...+ .+.+.+. ..+.++++|...
T Consensus 72 ---~a~~~aDiVvi~ag~~~k-p--G---~tR~dL~~~N~~I~~~i----~~~i~~~~p~a~ilvvtNPv 128 (326)
T 3vku_A 72 ---SDAKDADLVVITAGAPQK-P--G---ETRLDLVNKNLKILKSI----VDPIVDSGFNGIFLVAANPV 128 (326)
T ss_dssp ---GGGTTCSEEEECCCCC----------------------CHHHH----HHHHHTTTCCSEEEECSSSH
T ss_pred ---HHhcCCCEEEECCCCCCC-C--C---chHHHHHHHHHHHHHHH----HHHHHhcCCceEEEEccCch
Confidence 223578999999997431 1 1 12233455554433333 3444432 356777777654
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0015 Score=58.87 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=53.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCC-HHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLS-LDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~-~~~v~~~~~~ 141 (298)
.|++|||+|+ +++|...++.+...|+ +|+.+++++++++.+. ++ |... + .|..+ .+++.+.+.+
T Consensus 191 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l---------Ga~~-v--i~~~~~~~~~~~~i~~ 256 (373)
T 1p0f_A 191 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI-EL---------GATE-C--LNPKDYDKPIYEVICE 256 (373)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH-HT---------TCSE-E--ECGGGCSSCHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-Hc---------CCcE-E--EecccccchHHHHHHH
Confidence 4789999996 8999999888878899 8999999988877553 22 1111 1 24332 1223333444
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
+.. +.+|++|+++|.
T Consensus 257 ~t~--gg~Dvvid~~g~ 271 (373)
T 1p0f_A 257 KTN--GGVDYAVECAGR 271 (373)
T ss_dssp HTT--SCBSEEEECSCC
T ss_pred HhC--CCCCEEEECCCC
Confidence 433 479999999985
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0022 Score=58.22 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=38.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.+.+++++|+|+ |++|+.+++.+...|++|++++|++++++..
T Consensus 169 ~l~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~ 211 (384)
T 1l7d_A 169 TVPPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQV 211 (384)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHH
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 567899999996 7999999999999999999999998887765
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.012 Score=51.81 Aligned_cols=118 Identities=12% Similarity=0.099 Sum_probs=70.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+.|+||+|.+|..++..|+..| ..|+++|+++ .+....++.... ...++..... ..+.++.+
T Consensus 2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~----~~~~l~~~~~----t~d~~~a~----- 66 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIE----TRATVKGYLG----PEQLPDCL----- 66 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSS----SSCEEEEEES----GGGHHHHH-----
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccC----cCceEEEecC----CCCHHHHh-----
Confidence 48899999999999999999988 6899999987 333333443311 1112322210 11222222
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMH 210 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~ 210 (298)
.+.|++|+.+|..... ..+. .+.+..|.-....+.+.+..+ ...+.||++|....
T Consensus 67 --~~aDvVvi~ag~~~~~---g~~r---~dl~~~n~~i~~~i~~~i~~~---~p~a~viv~sNPv~ 121 (314)
T 1mld_A 67 --KGCDVVVIPAGVPRKP---GMTR---DDLFNTNATIVATLTAACAQH---CPDAMICIISNPVN 121 (314)
T ss_dssp --TTCSEEEECCSCCCCT---TCCG---GGGHHHHHHHHHHHHHHHHHH---CTTSEEEECSSCHH
T ss_pred --CCCCEEEECCCcCCCC---CCcH---HHHHHHHHHHHHHHHHHHHhh---CCCeEEEEECCCcc
Confidence 3689999999985421 1221 233556655555555544332 23578888776554
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0011 Score=59.17 Aligned_cols=41 Identities=22% Similarity=0.277 Sum_probs=36.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.|++|||+|+ +++|...++.+...|++|+.+++++++.+.+
T Consensus 176 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~ 216 (348)
T 3two_A 176 KGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDA 216 (348)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHH
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 4789999997 8999999988888999999999999888755
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0037 Score=56.79 Aligned_cols=44 Identities=18% Similarity=0.123 Sum_probs=39.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELI 106 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~ 106 (298)
.+.+.+|+|.|+ |.+|..+|+.+...|++|+++++++++++...
T Consensus 187 ~v~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~ 230 (405)
T 4dio_A 187 TVPAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQVA 230 (405)
T ss_dssp EECCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 356789999999 69999999999999999999999998877664
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.017 Score=50.80 Aligned_cols=122 Identities=16% Similarity=0.124 Sum_probs=73.6
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC--chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN--LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
++.+.+.|.|+ +.+|..+|..|+..|. +|+++|++ +++++....++....+......++..- .| .
T Consensus 6 ~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t-~d---~------- 73 (315)
T 3tl2_A 6 IKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGT-SD---Y------- 73 (315)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEE-SC---G-------
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEc-CC---H-------
Confidence 34567999997 9999999999999999 99999999 566666555554432110011123221 12 1
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM 209 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~ 209 (298)
+.+.+-|++|.++|.... + .++. .+.++.|.--.-.+.+.+..+ ...+.++++|...
T Consensus 74 ----~a~~~aDvVIiaag~p~k-p--g~~R---~dl~~~N~~i~~~i~~~i~~~---~p~a~vlvvsNPv 130 (315)
T 3tl2_A 74 ----ADTADSDVVVITAGIARK-P--GMSR---DDLVATNSKIMKSITRDIAKH---SPNAIIVVLTNPV 130 (315)
T ss_dssp ----GGGTTCSEEEECCSCCCC-T--TCCH---HHHHHHHHHHHHHHHHHHHHH---CTTCEEEECCSSH
T ss_pred ----HHhCCCCEEEEeCCCCCC-C--CCCH---HHHHHHHHHHHHHHHHHHHHh---CCCeEEEECCChH
Confidence 123578999999998532 1 2222 344555554433344433332 2356788887654
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0014 Score=57.82 Aligned_cols=74 Identities=11% Similarity=0.252 Sum_probs=49.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|++++|+||++++|...+..+...|++|+.++++ ++. +..+++. .. .+ .|..+.+.+.+
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~-~~~-~~~~~lG---------a~-~~--i~~~~~~~~~~------ 211 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASK-RNH-AFLKALG---------AE-QC--INYHEEDFLLA------ 211 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECH-HHH-HHHHHHT---------CS-EE--EETTTSCHHHH------
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEecc-chH-HHHHHcC---------CC-EE--EeCCCcchhhh------
Confidence 47899999999999999999999999999988854 333 3333321 11 12 24444332211
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
....+|++++++|.
T Consensus 212 -~~~g~D~v~d~~g~ 225 (321)
T 3tqh_A 212 -ISTPVDAVIDLVGG 225 (321)
T ss_dssp -CCSCEEEEEESSCH
T ss_pred -hccCCCEEEECCCc
Confidence 12479999999984
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0016 Score=57.34 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=36.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELI 106 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~ 106 (298)
|+ +||+||++++|...++.+...|++|+.+++++++.+.+.
T Consensus 148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~ 188 (324)
T 3nx4_A 148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLK 188 (324)
T ss_dssp CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH
T ss_pred Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 46 999999999999999988899999999999998877663
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0014 Score=55.94 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=37.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELI 106 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~ 106 (298)
+++| .++|.|+ ||.|++++..|++.|+ +|++++|+.++.+++.
T Consensus 106 ~~~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la 149 (253)
T 3u62_A 106 EVKE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKALD 149 (253)
T ss_dssp CCCS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCC
T ss_pred CCCC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 3567 8999987 8999999999999998 9999999988766653
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0024 Score=58.10 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=52.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|++|||.|+ +++|...++.+...|+ +|+.+++++++++.+. ++ |. .. +|..+.+...+.+.++
T Consensus 185 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~-~l---------Ga--~~--i~~~~~~~~~~~~~~~ 249 (398)
T 2dph_A 185 PGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLLS-DA---------GF--ET--IDLRNSAPLRDQIDQI 249 (398)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-TT---------TC--EE--EETTSSSCHHHHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-Hc---------CC--cE--EcCCCcchHHHHHHHH
Confidence 4789999996 9999998888877899 9999999988776542 11 22 22 3444432212222222
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
... ..+|++|.++|.
T Consensus 250 ~~g-~g~Dvvid~~g~ 264 (398)
T 2dph_A 250 LGK-PEVDCGVDAVGF 264 (398)
T ss_dssp HSS-SCEEEEEECSCT
T ss_pred hCC-CCCCEEEECCCC
Confidence 221 269999999985
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.015 Score=51.41 Aligned_cols=120 Identities=14% Similarity=0.095 Sum_probs=72.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+.+.+.|+|+ +.+|.++|..|+..|. +|+++|+++++++....++.....-.+...++.. ..| .+
T Consensus 6 ~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-t~d---~~--------- 71 (324)
T 3gvi_A 6 ARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTG-AND---YA--------- 71 (324)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESS---GG---------
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEE-eCC---HH---------
Confidence 4467899998 9999999999999998 9999999999887666666553210011123322 122 11
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVM 209 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~ 209 (298)
.+.+-|++|+.+|..... .++. .+.+..|. .+.+.+.+.+.+. ..+.++++|...
T Consensus 72 --a~~~aDiVIiaag~p~k~---G~~R---~dl~~~N~----~i~~~i~~~i~~~~p~a~iivvtNPv 127 (324)
T 3gvi_A 72 --AIEGADVVIVTAGVPRKP---GMSR---DDLLGINL----KVMEQVGAGIKKYAPEAFVICITNPL 127 (324)
T ss_dssp --GGTTCSEEEECCSCCCC-----------CHHHHHHH----HHHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred --HHCCCCEEEEccCcCCCC---CCCH---HHHHHhhH----HHHHHHHHHHHHHCCCeEEEecCCCc
Confidence 124689999999975321 1121 23344443 3444444444442 346777777654
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.032 Score=49.39 Aligned_cols=80 Identities=16% Similarity=0.038 Sum_probs=54.5
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
..+.|.|| |.+|.++|..|+..|. +|+++|+++++++.....+...........++... +|.+ +.+
T Consensus 10 ~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t----~d~~---ea~----- 76 (331)
T 1pzg_A 10 KKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE----YSYE---AAL----- 76 (331)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE----CSHH---HHH-----
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEe----CCHH---HHh-----
Confidence 46888998 9999999999999998 99999999998887555554432211111233321 2332 111
Q ss_pred ccCCccEEEEccCCCC
Q 022369 145 RLGPLHVLINNAGIFS 160 (298)
Q Consensus 145 ~~g~idilVnnag~~~ 160 (298)
.+-|++|..+|...
T Consensus 77 --~~aDiVi~a~g~p~ 90 (331)
T 1pzg_A 77 --TGADCVIVTAGLTK 90 (331)
T ss_dssp --TTCSEEEECCSCSS
T ss_pred --CCCCEEEEccCCCC
Confidence 26799999999753
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0058 Score=54.73 Aligned_cols=82 Identities=13% Similarity=0.324 Sum_probs=61.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc-------------------hHHHHHHHHHHHhhcCCCCCccE
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL-------------------KAANELIQKWQEEWSGKGLPLNI 122 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~ 122 (298)
++++.|+|.|+ +|+|.++|+.|+..|. ++.++|++. .+.+.+.+.+.+..+. .++
T Consensus 116 L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~----v~v 190 (353)
T 3h5n_A 116 LKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSE----ISV 190 (353)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT----SEE
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCC----CeE
Confidence 44678999987 7999999999999998 899998753 4667777777776443 478
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcccCCccEEEEccC
Q 022369 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAG 157 (298)
Q Consensus 123 ~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag 157 (298)
..+..+++...++ .+ +.+.|++|++..
T Consensus 191 ~~~~~~i~~~~~~-------~~-~~~~DlVvd~~D 217 (353)
T 3h5n_A 191 SEIALNINDYTDL-------HK-VPEADIWVVSAD 217 (353)
T ss_dssp EEEECCCCSGGGG-------GG-SCCCSEEEECCC
T ss_pred EEeecccCchhhh-------hH-hccCCEEEEecC
Confidence 8888888765522 22 457899988754
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.024 Score=49.38 Aligned_cols=117 Identities=13% Similarity=0.066 Sum_probs=71.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+.|+|+ |.+|.++|..|+..|. +|+++|+++++++....+++..........++.. ..| .+
T Consensus 2 kI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~-t~d---~~----------- 65 (294)
T 1oju_A 2 KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG-GAD---YS----------- 65 (294)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEE-ESC---GG-----------
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEE-eCC---HH-----------
Confidence 4788999 9999999999999998 9999999998887555555443221111112222 112 22
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVM 209 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~ 209 (298)
.+.+-|++|+.+|.... ..++. .+.++.|. .+.+.+.+.+.+. ..+.|+++|...
T Consensus 66 a~~~aDiVViaag~~~k---pG~~R---~dl~~~N~----~i~~~i~~~i~~~~p~a~iivvsNPv 121 (294)
T 1oju_A 66 LLKGSEIIVVTAGLARK---PGMTR---LDLAHKNA----GIIKDIAKKIVENAPESKILVVTNPM 121 (294)
T ss_dssp GGTTCSEEEECCCCCCC---SSCCH---HHHHHHHH----HHHHHHHHHHHTTSTTCEEEECSSSH
T ss_pred HhCCCCEEEECCCCCCC---CCCcH---HHHHHHHH----HHHHHHHHHHHhhCCCeEEEEeCCcc
Confidence 12368999999997532 12232 23355553 3445555555543 346777777643
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0015 Score=58.14 Aligned_cols=118 Identities=13% Similarity=0.082 Sum_probs=71.6
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC--E-----EEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA--H-----VVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~--~-----Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
..++||||+|.||..+|..|+..|. + ++++|+++ ++++....+++.... . ...-+..- ++. .
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~----~-~~~~~~~~-~~~---~ 74 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL----P-LLKDVIAT-DKE---E 74 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC----T-TEEEEEEE-SCH---H
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhh----c-ccCCEEEc-CCc---H
Confidence 4699999999999999999998875 5 99999975 466666666665210 0 11111110 111 1
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CC-eEEEEcCCc
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PS-RIINVNSVM 209 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g-~Iv~isS~~ 209 (298)
+.+.+-|++|..||.... + .+ +-.+.++.|...... +.+.+.+.. ++ .++++|...
T Consensus 75 -------~~~~daDvVvitAg~prk-p--G~---tR~dll~~N~~i~~~----i~~~i~~~~~~~~~vivvsNPv 132 (333)
T 5mdh_A 75 -------IAFKDLDVAILVGSMPRR-D--GM---ERKDLLKANVKIFKC----QGAALDKYAKKSVKVIVVGNPA 132 (333)
T ss_dssp -------HHTTTCSEEEECCSCCCC-T--TC---CTTTTHHHHHHHHHH----HHHHHHHHSCTTCEEEECSSSH
T ss_pred -------HHhCCCCEEEEeCCCCCC-C--CC---CHHHHHHHHHHHHHH----HHHHHHHhCCCCeEEEEcCCch
Confidence 112468999999997532 1 11 233456666655444 444455443 35 588887754
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0029 Score=52.03 Aligned_cols=43 Identities=23% Similarity=0.405 Sum_probs=37.9
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~ 109 (298)
+++|+||++.+|.++++.|++.|++|++++|++++.+.+.+.+
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~ 44 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEY 44 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHH
T ss_pred eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence 4789999999999999999999999999999988877765543
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=96.69 E-value=0.075 Score=46.92 Aligned_cols=119 Identities=11% Similarity=-0.015 Sum_probs=73.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
..+.+.|+|+ |.+|..+|..++..|. .|+++|+++++++....+++....-.. ..++.. ..|..+
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~-~~~i~~-t~d~~~---------- 86 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLH-TAKIVS-GKDYSV---------- 86 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSC-CSEEEE-ESSSCS----------
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhccc-CCeEEE-cCCHHH----------
Confidence 3467899999 9999999999999997 899999999988888777766422110 112221 233322
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVM 209 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~ 209 (298)
+.+-|++|..||..... .++. .+.+..|.- +.+.+.+.+.+. ..+.++++|...
T Consensus 87 ----~~daDiVIitaG~p~kp---G~tR---~dll~~N~~----I~k~i~~~I~k~~P~a~ilvvtNPv 141 (330)
T 3ldh_A 87 ----SAGSKLVVITAGARQQE---GESR---LNLVQRNVN----IFKFIIPNIVKHSPDCLKELHPELG 141 (330)
T ss_dssp ----CSSCSEEEECCSCCCCS---SCCT---TGGGHHHHH----HHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred ----hCCCCEEEEeCCCCCCC---CCCH---HHHHHhhHH----HHHHHHHHHHhhCCCceEEeCCCcc
Confidence 34789999999985421 1221 123333432 333333444332 346677777643
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0029 Score=56.61 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=32.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA 101 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~ 101 (298)
.|++|||+||++++|...++.+...|++++.+.++.++
T Consensus 167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~ 204 (357)
T 1zsy_A 167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPD 204 (357)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSC
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccc
Confidence 47899999999999999888777789998888766543
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.033 Score=48.98 Aligned_cols=118 Identities=7% Similarity=0.047 Sum_probs=72.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
...+.|+|| |.+|..++..|+.+|. .|+++|+++++++....++....+..+ ..+.+.. | +.+
T Consensus 6 ~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~--~~~~v~~-~--~~~--------- 70 (317)
T 3d0o_A 6 GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSP--TTVRVKA-G--EYS--------- 70 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSS--SCCEEEE-C--CGG---------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcC--CCeEEEe-C--CHH---------
Confidence 357889998 9999999999999884 899999998888866666655322111 1223322 2 222
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVM 209 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~ 209 (298)
.+.+-|++|..+|..... ..+. ...+..|.- +.+.+.+.+.+. ..+.|+++|...
T Consensus 71 --a~~~aDvVvi~ag~~~~~---g~~r---~dl~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPv 126 (317)
T 3d0o_A 71 --DCHDADLVVICAGAAQKP---GETR---LDLVSKNLK----IFKSIVGEVMASKFDGIFLVATNPV 126 (317)
T ss_dssp --GGTTCSEEEECCCCCCCT---TCCH---HHHHHHHHH----HHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred --HhCCCCEEEECCCCCCCC---CCcH---HHHHHHHHH----HHHHHHHHHHHhCCCcEEEEecCcH
Confidence 134789999999985321 1222 233444443 334444444443 356777766544
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0058 Score=54.89 Aligned_cols=78 Identities=10% Similarity=0.095 Sum_probs=51.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|++|||+|+ +++|...++.+...|+ +|+.+++++++++.+. ++. .. .+ .|..+.+-. +.+.++
T Consensus 190 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~-~lG---------a~-~v--i~~~~~~~~-~~~~~~ 254 (371)
T 1f8f_A 190 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QLG---------AT-HV--INSKTQDPV-AAIKEI 254 (371)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HHT---------CS-EE--EETTTSCHH-HHHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH-HcC---------CC-EE--ecCCccCHH-HHHHHh
Confidence 4789999995 8999999888878899 7999999988776552 321 11 12 233332222 222232
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
.. +.+|++|+++|.
T Consensus 255 ~~--gg~D~vid~~g~ 268 (371)
T 1f8f_A 255 TD--GGVNFALESTGS 268 (371)
T ss_dssp TT--SCEEEEEECSCC
T ss_pred cC--CCCcEEEECCCC
Confidence 22 369999999984
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.005 Score=56.34 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=35.3
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELI 106 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~ 106 (298)
.+++|.|. |-+|..+|+.|.+.|..|++++++++.++.+.
T Consensus 5 ~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~ 44 (413)
T 3l9w_A 5 MRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIETLR 44 (413)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHHHHH
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence 46889997 67999999999999999999999988877654
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0027 Score=56.67 Aligned_cols=79 Identities=11% Similarity=0.056 Sum_probs=51.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|+++||+|+ +++|...++.+...|+ +|+.+++++++++.+ +++. .. .+ .|..+.+-.+++ .++
T Consensus 166 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~-~~lG---------a~-~v--i~~~~~~~~~~v-~~~ 230 (352)
T 3fpc_A 166 LGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSRKHCCDIA-LEYG---------AT-DI--INYKNGDIVEQI-LKA 230 (352)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCCHHHHHHH-HHHT---------CC-EE--ECGGGSCHHHHH-HHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHHHHHHH-HHhC---------Cc-eE--EcCCCcCHHHHH-HHH
Confidence 3788999985 8999998888888899 899999998876644 2321 11 12 344333322222 222
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
... ..+|++++++|.
T Consensus 231 t~g-~g~D~v~d~~g~ 245 (352)
T 3fpc_A 231 TDG-KGVDKVVIAGGD 245 (352)
T ss_dssp TTT-CCEEEEEECSSC
T ss_pred cCC-CCCCEEEECCCC
Confidence 221 259999999885
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.022 Score=50.27 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=72.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+.+.|+|+ |.+|.++|..|+..|. +|+++|+++++++....+++....-.+...++.. ..| .+
T Consensus 5 ~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~-t~d---~~---------- 69 (321)
T 3p7m_A 5 RKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRG-TND---YK---------- 69 (321)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE-ESC---GG----------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEE-cCC---HH----------
Confidence 456888885 9999999999999988 9999999999888776666653211011122321 112 11
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVM 209 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~ 209 (298)
.+.+-|++|+.+|..... .++. .+.+..|.- +.+.+.+.+.+. ..+.+++++...
T Consensus 70 -a~~~aDvVIi~ag~p~k~---G~~R---~dl~~~N~~----i~~~i~~~i~~~~p~a~vivvtNPv 125 (321)
T 3p7m_A 70 -DLENSDVVIVTAGVPRKP---GMSR---DDLLGINIK----VMQTVGEGIKHNCPNAFVICITNPL 125 (321)
T ss_dssp -GGTTCSEEEECCSCCCCT---TCCH---HHHHHHHHH----HHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred -HHCCCCEEEEcCCcCCCC---CCCH---HHHHHHhHH----HHHHHHHHHHHHCCCcEEEEecCch
Confidence 134689999999975321 1232 234444543 344444444443 346777776643
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.028 Score=48.44 Aligned_cols=43 Identities=26% Similarity=0.229 Sum_probs=36.8
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~ 109 (298)
+++.|.|+ |.+|..+|..|++.|++|++++|+++.++...+.+
T Consensus 5 ~kV~VIGa-G~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i 47 (283)
T 4e12_A 5 TNVTVLGT-GVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRF 47 (283)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Confidence 45666665 77999999999999999999999999888877664
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0044 Score=55.67 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=41.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~ 109 (298)
+++||+++|.|. +.+|..+|+.|.+.|++|++.+++.+++++..+++
T Consensus 170 ~L~GktV~V~G~-G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ 216 (364)
T 1leh_A 170 SLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEE 216 (364)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred CCCcCEEEEECc-hHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc
Confidence 688999999997 77999999999999999999999988887776653
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.016 Score=51.44 Aligned_cols=78 Identities=14% Similarity=0.087 Sum_probs=50.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|++++|+|+ +++|...++.+... |++|+.+++++++++.+. ++ |... ++ |..+ +..++ +.++
T Consensus 171 ~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~-~l---------Ga~~-~i--~~~~-~~~~~-v~~~ 234 (345)
T 3jv7_A 171 PGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLDDDRLALAR-EV---------GADA-AV--KSGA-GAADA-IREL 234 (345)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH-HT---------TCSE-EE--ECST-THHHH-HHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH-Hc---------CCCE-EE--cCCC-cHHHH-HHHH
Confidence 3789999998 99999887777666 789999999988877552 22 1122 22 2222 22222 2222
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
... ..+|++++++|.
T Consensus 235 t~g-~g~d~v~d~~G~ 249 (345)
T 3jv7_A 235 TGG-QGATAVFDFVGA 249 (345)
T ss_dssp HGG-GCEEEEEESSCC
T ss_pred hCC-CCCeEEEECCCC
Confidence 221 269999999985
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0046 Score=54.22 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=35.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.|+++||+|| |++|...++.+...|++|+.++ ++++.+.+
T Consensus 142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~ 181 (315)
T 3goh_A 142 KQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASLSQALA 181 (315)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSCCHHHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-ChhhHHHH
Confidence 4789999999 9999999888888899999999 87777655
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.026 Score=49.42 Aligned_cols=79 Identities=13% Similarity=0.091 Sum_probs=52.8
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+.+.|+|| |.+|..+|..|+..|. +|+++|+++++++....++...........++... .| .+
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~d---~~----------- 66 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT-NN---YA----------- 66 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE-SC---GG-----------
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC-CC---HH-----------
Confidence 46889998 9999999999999996 99999999988876665554421100111123321 22 11
Q ss_pred ccCCccEEEEccCCCC
Q 022369 145 RLGPLHVLINNAGIFS 160 (298)
Q Consensus 145 ~~g~idilVnnag~~~ 160 (298)
.+.+-|++|.++|...
T Consensus 67 a~~~aD~Vi~a~g~p~ 82 (309)
T 1ur5_A 67 DTANSDVIVVTSGAPR 82 (309)
T ss_dssp GGTTCSEEEECCCC--
T ss_pred HHCCCCEEEEcCCCCC
Confidence 1246899999999753
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.035 Score=48.74 Aligned_cols=117 Identities=19% Similarity=0.193 Sum_probs=70.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+.|+|+ |.+|.++|..|+..|. .|+++|+++++++....+++....-... .+.....| +. +
T Consensus 2 kv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~--~~~v~~~~--~~-----------~ 65 (314)
T 3nep_X 2 KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGF--DTRVTGTN--DY-----------G 65 (314)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTC--CCEEEEES--SS-----------G
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCC--CcEEEECC--CH-----------H
Confidence 4778896 9999999999999987 9999999999888776666653211010 12222112 11 1
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVM 209 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~ 209 (298)
.+.+-|++|.+||.... + .++ =.+.++.|.- +.+.+.+.+.+. ..+.++++|...
T Consensus 66 a~~~aDvVii~ag~~~k-p--G~~---R~dl~~~N~~----i~~~i~~~i~~~~p~a~vivvtNPv 121 (314)
T 3nep_X 66 PTEDSDVCIITAGLPRS-P--GMS---RDDLLAKNTE----IVGGVTEQFVEGSPDSTIIVVANPL 121 (314)
T ss_dssp GGTTCSEEEECCCC-------------CHHHHHHHHH----HHHHHHHHHHTTCTTCEEEECCSSH
T ss_pred HhCCCCEEEECCCCCCC-C--CCC---HHHHHHhhHH----HHHHHHHHHHHhCCCcEEEecCCch
Confidence 23478999999998532 1 112 2234555543 344444555443 357788887754
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0045 Score=53.42 Aligned_cols=39 Identities=21% Similarity=0.342 Sum_probs=35.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
.+++||.++|.|+++-+|+.+|..|+++|++|.++.|+.
T Consensus 156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t 194 (285)
T 3p2o_A 156 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT 194 (285)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc
Confidence 468899999999999999999999999999999988753
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0078 Score=57.21 Aligned_cols=64 Identities=11% Similarity=0.218 Sum_probs=49.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC-------------------chHHHHHHHHHHHhhcCCCCCc
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN-------------------LKAANELIQKWQEEWSGKGLPL 120 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~ 120 (298)
..++++.|+|.|++ |+|.++|+.|+..|. ++.++|.+ ..+.+.+.+.+++..+. .
T Consensus 323 ~kL~~~kVLIVGaG-GLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~----v 397 (598)
T 3vh1_A 323 DIIKNTKVLLLGAG-TLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPL----M 397 (598)
T ss_dssp HHHHTCEEEEECCS-HHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTT----C
T ss_pred HHHhCCeEEEECCC-HHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCC----c
Confidence 45677899999864 899999999999998 89999654 25788888888876443 4
Q ss_pred cEEEEEcCC
Q 022369 121 NIEAMELDL 129 (298)
Q Consensus 121 ~~~~~~~D~ 129 (298)
++..+..++
T Consensus 398 ~v~~~~~~I 406 (598)
T 3vh1_A 398 DATGVKLSI 406 (598)
T ss_dssp EEEEECCCC
T ss_pred EEEEEeccc
Confidence 677776665
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0036 Score=55.29 Aligned_cols=39 Identities=36% Similarity=0.499 Sum_probs=35.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
++||+||++|+|...++.+...|++|+.+++++++++.+
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~ 191 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL 191 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 799999999999999998888999999999998887655
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=96.18 E-value=0.055 Score=47.43 Aligned_cols=79 Identities=19% Similarity=0.090 Sum_probs=52.0
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+.+.|.|+ |.+|.++|..|++.|. +|+++++++++++....++...........++... .|. +
T Consensus 5 ~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~d~---~----------- 68 (317)
T 2ewd_A 5 RKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT-DDY---A----------- 68 (317)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE-SCG---G-----------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC-CCH---H-----------
Confidence 46888898 8999999999999998 99999999988876533332211100001123221 221 1
Q ss_pred ccCCccEEEEccCCCC
Q 022369 145 RLGPLHVLINNAGIFS 160 (298)
Q Consensus 145 ~~g~idilVnnag~~~ 160 (298)
.+.+-|++|.++|...
T Consensus 69 a~~~aDiVi~avg~p~ 84 (317)
T 2ewd_A 69 DISGSDVVIITASIPG 84 (317)
T ss_dssp GGTTCSEEEECCCCSS
T ss_pred HhCCCCEEEEeCCCCC
Confidence 1236899999999754
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.074 Score=46.94 Aligned_cols=117 Identities=8% Similarity=0.034 Sum_probs=72.6
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
..+.|+|| |.+|..++..++..+. .|+++|+++++++....++....+-. ..+.+.. | +.+
T Consensus 10 ~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~---~~~~i~~-~--~~~---------- 72 (326)
T 2zqz_A 10 QKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFT---SPKKIYS-A--EYS---------- 72 (326)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGS---CCCEEEE-C--CGG----------
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhc---CCeEEEE-C--CHH----------
Confidence 57999999 9999999999998886 89999999999988777776533111 1233322 2 222
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhc-CCCCeEEEEcCCcc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR-GSPSRIINVNSVMH 210 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~-~~~g~Iv~isS~~~ 210 (298)
.+.+-|++|..+|..... .++.+ ..+..|.- +.+.+.+.+.+ ...+.|+++|....
T Consensus 73 -a~~~aDvVii~ag~~~k~---g~~R~---dl~~~n~~----i~~~i~~~i~~~~p~a~iiv~tNPv~ 129 (326)
T 2zqz_A 73 -DAKDADLVVITAGAPQKP---GETRL---DLVNKNLK----ILKSIVDPIVDSGFNGIFLVAANPVD 129 (326)
T ss_dssp -GGGGCSEEEECCCCC--------CHH---HHHHHHHH----HHHHHHHHHHHHTCCSEEEECSSSHH
T ss_pred -HhCCCCEEEEcCCCCCCC---CCCHH---HHHHHHHH----HHHHHHHHHHHHCCCeEEEEeCCcHH
Confidence 124689999999975321 12222 33444443 34444444443 24578888766543
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0096 Score=52.82 Aligned_cols=79 Identities=16% Similarity=0.121 Sum_probs=48.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|++++|.|+ +|+|...+..++.. |++|+.+++++++++... ++ +.... .|..+.+..+++.+ +
T Consensus 163 ~g~~VlV~Ga-G~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~-~~---------Ga~~~---i~~~~~~~~~~v~~-~ 227 (348)
T 4eez_A 163 PGDWQVIFGA-GGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK-KI---------GADVT---INSGDVNPVDEIKK-I 227 (348)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH-HT---------TCSEE---EEC-CCCHHHHHHH-H
T ss_pred CCCEEEEEcC-CCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh-hc---------CCeEE---EeCCCCCHHHHhhh-h
Confidence 3789999987 77887777777655 779999999988765442 21 11222 34444443333322 2
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
... ..+|.++.++|.
T Consensus 228 t~g-~g~d~~~~~~~~ 242 (348)
T 4eez_A 228 TGG-LGVQSAIVCAVA 242 (348)
T ss_dssp TTS-SCEEEEEECCSC
T ss_pred cCC-CCceEEEEeccC
Confidence 221 257888888764
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.1 Score=45.70 Aligned_cols=116 Identities=10% Similarity=0.048 Sum_probs=71.0
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+.+.|+|+ |.+|..+|..++..|. +|+++|+++++++....++.......+ ..+.+.. | +.
T Consensus 7 ~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~--~~~~i~~-~--~~----------- 69 (316)
T 1ldn_A 7 ARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAP--KPVDIWH-G--DY----------- 69 (316)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSS--SCCEEEE-C--CG-----------
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcC--CCeEEEc-C--cH-----------
Confidence 57899998 9999999999998885 899999998877766666655432111 1233322 2 21
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCC
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSV 208 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~ 208 (298)
+.+.+-|++|.++|+..... .+.. +.+..| ..+.+.+.+.+.+. ..+.++++|-.
T Consensus 70 ~al~~aDvViia~~~~~~~g---~~r~---dl~~~n----~~i~~~i~~~i~~~~p~a~~iv~tNP 125 (316)
T 1ldn_A 70 DDCRDADLVVICAGANQKPG---ETRL---DLVDKN----IAIFRSIVESVMASGFQGLFLVATNP 125 (316)
T ss_dssp GGTTTCSEEEECCSCCCCTT---TCSG---GGHHHH----HHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred HHhCCCCEEEEcCCCCCCCC---CCHH---HHHHcC----hHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 12347899999999854221 1211 223333 33445555555443 34566666553
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.092 Score=45.61 Aligned_cols=114 Identities=11% Similarity=0.057 Sum_probs=71.7
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEE-cCCCCHHHHHHHHHHHhc
Q 022369 68 CIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME-LDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~D~s~~~~v~~~~~~~~~ 144 (298)
+.|+|+ |+||..+|..|+.++. +++++|.++++.+-.+.++.......+ ....... .|. +
T Consensus 3 V~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~--~~~~i~~~~d~---~----------- 65 (294)
T 2x0j_A 3 LGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGID--KYPKIVGGADY---S----------- 65 (294)
T ss_dssp EEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGT--CCCEEEEESCG---G-----------
T ss_pred EEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCC--CCCeEecCCCH---H-----------
Confidence 667785 9999999999998875 899999999888877777765332111 1222222 232 2
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCC
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSV 208 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~ 208 (298)
.+.+-|++|..||.... ..++. ++.++.|.- +.+.+.+.+.+.. .+.++.+|..
T Consensus 66 ~~~~aDvVvitAG~prk---pGmtR---~dLl~~Na~----I~~~i~~~i~~~~p~aivlvvsNP 120 (294)
T 2x0j_A 66 LLKGSEIIVVTAGLARK---PGMTR---LDLAHKNAG----IIKDIAKKIVENAPESKILVVTNP 120 (294)
T ss_dssp GGTTCSEEEECCCCCCC---SSSCH---HHHHHHHHH----HHHHHHHHHHTTSTTCEEEECSSS
T ss_pred HhCCCCEEEEecCCCCC---CCCch---HHHHHHHHH----HHHHHHHHHHhcCCceEEEEecCc
Confidence 12368999999998642 12333 344565643 5555555555543 4566666653
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.065 Score=47.21 Aligned_cols=79 Identities=16% Similarity=0.087 Sum_probs=54.3
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+.+.|.|| |.+|..+|..|+..|. .|+++|+++++++.....+...........++... .|. +
T Consensus 5 ~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d~---~----------- 68 (322)
T 1t2d_A 5 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS-NTY---D----------- 68 (322)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE-CCG---G-----------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC-CCH---H-----------
Confidence 46888898 9999999999999998 99999999998887666665432111111223321 221 1
Q ss_pred ccCCccEEEEccCCCC
Q 022369 145 RLGPLHVLINNAGIFS 160 (298)
Q Consensus 145 ~~g~idilVnnag~~~ 160 (298)
.+.+-|++|.++|+..
T Consensus 69 al~~aD~Vi~a~g~p~ 84 (322)
T 1t2d_A 69 DLAGADVVIVTAGFTK 84 (322)
T ss_dssp GGTTCSEEEECCSCSS
T ss_pred HhCCCCEEEEeCCCCC
Confidence 1247899999999753
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.081 Score=46.68 Aligned_cols=79 Identities=20% Similarity=0.123 Sum_probs=53.5
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+.+.|.|| |.+|..+|..|+..|. +|+++|+++++++.....+...........++... .|. +
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d~---~----------- 78 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE-NNY---E----------- 78 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SCG---G-----------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC-CCH---H-----------
Confidence 46888898 9999999999999998 99999999998886554444322110111233321 221 1
Q ss_pred ccCCccEEEEccCCCC
Q 022369 145 RLGPLHVLINNAGIFS 160 (298)
Q Consensus 145 ~~g~idilVnnag~~~ 160 (298)
.+.+-|++|.++|+..
T Consensus 79 al~~aD~VI~avg~p~ 94 (328)
T 2hjr_A 79 YLQNSDVVIITAGVPR 94 (328)
T ss_dssp GGTTCSEEEECCSCCC
T ss_pred HHCCCCEEEEcCCCCC
Confidence 1246899999999753
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0043 Score=53.52 Aligned_cols=44 Identities=27% Similarity=0.398 Sum_probs=38.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELI 106 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~ 106 (298)
+++++.++|.|+ |++|+++++.|++.|++|++++|+.++.+++.
T Consensus 126 ~~~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~ 169 (275)
T 2hk9_A 126 EVKEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKLA 169 (275)
T ss_dssp TGGGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHHHHHHT
T ss_pred CcCCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHHHHHHH
Confidence 466889999996 69999999999999999999999988776654
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.012 Score=51.33 Aligned_cols=44 Identities=25% Similarity=0.306 Sum_probs=38.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.++.|++++|.|+ |+||+++|+.+...|++|++++|+.++.+..
T Consensus 153 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~ 196 (300)
T 2rir_A 153 YTIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLARI 196 (300)
T ss_dssp SCSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 4688999999996 8999999999999999999999998765543
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.033 Score=49.26 Aligned_cols=79 Identities=11% Similarity=0.144 Sum_probs=50.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCE-EEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAH-VVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~-Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|++++|+|+ +|+|...+..+...|++ ++.+++++++++.+ +++ |.. ..+ |.++.+ ..+..+.+
T Consensus 160 ~g~~VlV~Ga-G~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a-~~l---------Ga~-~~i--~~~~~~-~~~~~~~~ 224 (346)
T 4a2c_A 160 ENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDISSEKLALA-KSF---------GAM-QTF--NSSEMS-APQMQSVL 224 (346)
T ss_dssp TTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHH-HHT---------TCS-EEE--ETTTSC-HHHHHHHH
T ss_pred CCCEEEEECC-CCcchHHHHHHHHcCCcEEEEEechHHHHHHH-HHc---------CCe-EEE--eCCCCC-HHHHHHhh
Confidence 4789999987 89999999888888985 56778888776544 222 112 222 333322 22333443
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
.+. +..|+++.++|.
T Consensus 225 ~~~-~g~d~v~d~~G~ 239 (346)
T 4a2c_A 225 REL-RFNQLILETAGV 239 (346)
T ss_dssp GGG-CSSEEEEECSCS
T ss_pred ccc-CCcccccccccc
Confidence 332 568999998884
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.00 E-value=0.07 Score=46.90 Aligned_cols=117 Identities=9% Similarity=0.054 Sum_probs=71.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
..+.|+|| |.+|..++..|+..+. .|+++|+++++++....++....+-. ..+.+.. | +.+
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~---~~~~v~~-~--~~~---------- 68 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFT---APKKIYS-G--EYS---------- 68 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGS---CCCEEEE-C--CGG----------
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhc---CCeEEEE-C--CHH----------
Confidence 46899998 9999999999998886 89999999999988777776643211 1233322 2 211
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCcc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVMH 210 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~~ 210 (298)
.+.+-|++|..+|..... .++. .+.+..|. .+.+.+.+.+.+. ..+.|+++|....
T Consensus 69 -a~~~aDvVii~ag~~~~~---g~~R---~dl~~~n~----~i~~~i~~~i~~~~p~a~iiv~tNPv~ 125 (318)
T 1ez4_A 69 -DCKDADLVVITAGAPQKP---GESR---LDLVNKNL----NILSSIVKPVVDSGFDGIFLVAANPVD 125 (318)
T ss_dssp -GGTTCSEEEECCCC----------------CHHHHH----HHHHHHHHHHHHTTCCSEEEECSSSHH
T ss_pred -HhCCCCEEEECCCCCCCC---CCCH---HHHHHHHH----HHHHHHHHHHHHhCCCeEEEEeCCcHH
Confidence 235789999999975321 1111 12333333 3444445555443 4577888766543
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.012 Score=50.49 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=34.0
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN 98 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~ 98 (298)
+.||.++|.|++.-.|+.+|+.|+++|++|.++.++
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~ 183 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK 183 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC
Confidence 789999999999999999999999999999998765
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.023 Score=52.55 Aligned_cols=79 Identities=25% Similarity=0.222 Sum_probs=53.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.++++|.++|.|. ++.|+++|+.|+++|++|.+.|++........+.+++. .+.+....-.+ +
T Consensus 5 ~~~~~k~v~viG~-G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~--------gi~~~~g~~~~-~------- 67 (451)
T 3lk7_A 5 TTFENKKVLVLGL-ARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEE--------GIKVVCGSHPL-E------- 67 (451)
T ss_dssp CTTTTCEEEEECC-TTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHT--------TCEEEESCCCG-G-------
T ss_pred hhcCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhC--------CCEEEECCChH-H-------
Confidence 4567899999999 78999999999999999999999764323333445442 23333322111 0
Q ss_pred HHhcccCC-ccEEEEccCCCC
Q 022369 141 AWNGRLGP-LHVLINNAGIFS 160 (298)
Q Consensus 141 ~~~~~~g~-idilVnnag~~~ 160 (298)
.+.. .|.+|.+.|+..
T Consensus 68 ----~~~~~~d~vv~spgi~~ 84 (451)
T 3lk7_A 68 ----LLDEDFCYMIKNPGIPY 84 (451)
T ss_dssp ----GGGSCEEEEEECTTSCT
T ss_pred ----hhcCCCCEEEECCcCCC
Confidence 1123 899999999854
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.011 Score=50.48 Aligned_cols=46 Identities=30% Similarity=0.483 Sum_probs=39.6
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~ 109 (298)
+++| +++|.|+ |++|+++++.|.+.|++|++++|+.++.+++.+++
T Consensus 114 ~l~~-~v~iiG~-G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~ 159 (263)
T 2d5c_A 114 PLKG-PALVLGA-GGAGRAVAFALREAGLEVWVWNRTPQRALALAEEF 159 (263)
T ss_dssp CCCS-CEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHH
T ss_pred CCCC-eEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence 5678 8999997 77999999999999999999999988877766543
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.056 Score=47.18 Aligned_cols=75 Identities=19% Similarity=0.146 Sum_probs=48.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+.|.|+ |.+|..+|..|+..|. +|+++|+++++++....++....+ .. ....+.. ++.+
T Consensus 2 kI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~-~~--~~~~i~~---~~~~----------- 63 (304)
T 2v6b_A 2 KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAP-VS--HGTRVWH---GGHS----------- 63 (304)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCC-TT--SCCEEEE---ECGG-----------
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhh-hc--CCeEEEE---CCHH-----------
Confidence 4788898 9999999999999998 999999998877765544433211 00 1122211 1211
Q ss_pred ccCCccEEEEccCCC
Q 022369 145 RLGPLHVLINNAGIF 159 (298)
Q Consensus 145 ~~g~idilVnnag~~ 159 (298)
.+.+-|++|.++|..
T Consensus 64 a~~~aDvVIi~~~~~ 78 (304)
T 2v6b_A 64 ELADAQVVILTAGAN 78 (304)
T ss_dssp GGTTCSEEEECC---
T ss_pred HhCCCCEEEEcCCCC
Confidence 124789999999874
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.012 Score=50.74 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=34.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN 98 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~ 98 (298)
.+++||.++|.|.++-.|+.+|..|++.|++|.++.++
T Consensus 157 i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~ 194 (286)
T 4a5o_A 157 ADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRF 194 (286)
T ss_dssp CCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence 46889999999999889999999999999999998765
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.86 E-value=0.035 Score=48.81 Aligned_cols=117 Identities=10% Similarity=-0.015 Sum_probs=66.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
..+.|+|+ |.+|..++..|+..|. .|+++|.++++++....++....+- ...+.+. . .+.
T Consensus 8 ~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~---~~~~~i~-~--~~~----------- 69 (318)
T 1y6j_A 8 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPF---MGQMSLY-A--GDY----------- 69 (318)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCC---TTCEEEC-----CG-----------
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHh---cCCeEEE-E--CCH-----------
Confidence 35888898 9999999999999987 9999999988877655565442110 0122221 1 121
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM 209 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~ 209 (298)
+.+.+-|++|.++|.... + ..+ -.+.+..|.--...+.+.+.++ ...+.|+++|...
T Consensus 70 ~a~~~aDvVii~~g~p~k-~--g~~---r~dl~~~n~~i~~~i~~~i~~~---~p~a~viv~tNPv 126 (318)
T 1y6j_A 70 SDVKDCDVIVVTAGANRK-P--GET---RLDLAKKNVMIAKEVTQNIMKY---YNHGVILVVSNPV 126 (318)
T ss_dssp GGGTTCSEEEECCCC---------C---HHHHHHHHHHHHHHHHHHHHHH---CCSCEEEECSSSH
T ss_pred HHhCCCCEEEEcCCCCCC-C--CcC---HHHHHHhhHHHHHHHHHHHHHh---CCCcEEEEecCcH
Confidence 123578999999997431 1 122 2234555555444444444443 3456777765543
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.017 Score=50.21 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=38.3
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.++.|++++|.|+ |+||+++|+.+...|++|++++|+.++.+..
T Consensus 151 ~~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~ 194 (293)
T 3d4o_A 151 FTIHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESDLLARI 194 (293)
T ss_dssp SCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 3678999999995 7999999999999999999999998765443
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.035 Score=48.51 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=56.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHH-------HHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQK-------WQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
+.+++.|.| .|-+|..+|+.|++.|++|++++|++++.+.+.+. ..+... ...++..=+.+...++
T Consensus 20 ~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~------~aDvvi~~vp~~~~~~ 92 (310)
T 3doj_A 20 HMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIK------KCKYTIAMLSDPCAAL 92 (310)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHH------HCSEEEECCSSHHHHH
T ss_pred cCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHH------hCCEEEEEcCCHHHHH
Confidence 335677776 57899999999999999999999999888776532 111111 1223334455566677
Q ss_pred HHH---HHHhcccCCccEEEEccCC
Q 022369 137 RFS---EAWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 137 ~~~---~~~~~~~g~idilVnnag~ 158 (298)
+++ +++.....+=.++|++..+
T Consensus 93 ~v~~~~~~l~~~l~~g~~vv~~st~ 117 (310)
T 3doj_A 93 SVVFDKGGVLEQICEGKGYIDMSTV 117 (310)
T ss_dssp HHHHSTTCGGGGCCTTCEEEECSCC
T ss_pred HHHhCchhhhhccCCCCEEEECCCC
Confidence 666 5554443333566666543
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.014 Score=54.24 Aligned_cols=74 Identities=14% Similarity=0.243 Sum_probs=57.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
..++|.|+ |-+|..+|+.|.++|+.|++++++++.++.+.+++ .+..+..|.++++-++++=
T Consensus 4 M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-----------~~~~i~Gd~~~~~~L~~Ag------ 65 (461)
T 4g65_A 4 MKIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-----------DLRVVNGHASHPDVLHEAG------ 65 (461)
T ss_dssp EEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-----------SCEEEESCTTCHHHHHHHT------
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-----------CcEEEEEcCCCHHHHHhcC------
Confidence 45788887 57999999999999999999999998887775442 5678889999998665541
Q ss_pred cCCccEEEEccC
Q 022369 146 LGPLHVLINNAG 157 (298)
Q Consensus 146 ~g~idilVnnag 157 (298)
..+-|.+|...+
T Consensus 66 i~~ad~~ia~t~ 77 (461)
T 4g65_A 66 AQDADMLVAVTN 77 (461)
T ss_dssp TTTCSEEEECCS
T ss_pred CCcCCEEEEEcC
Confidence 125777776443
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.026 Score=52.45 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=53.8
Q ss_pred CEEEEeCCCC-chHHHHHHHHHHc----CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 66 LTCIVTGSTS-GIGREIARQLAES----GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 66 k~vlITGas~-GIG~~~a~~la~~----G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
..+.|.||++ |.|.++|..|++. |..|+++|+++++++...+......+..+...++..- +|.+ +.+
T Consensus 4 ~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~t----tD~~---eal- 75 (480)
T 1obb_A 4 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT----MNLD---DVI- 75 (480)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE----SCHH---HHH-
T ss_pred CEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEE----CCHH---HHh-
Confidence 4688889999 9999999999854 7899999999998887655544332222222233331 2322 111
Q ss_pred HHhcccCCccEEEEccCCC
Q 022369 141 AWNGRLGPLHVLINNAGIF 159 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~ 159 (298)
.+-|++|..+|..
T Consensus 76 ------~dAD~VIiaagv~ 88 (480)
T 1obb_A 76 ------IDADFVINTAMVG 88 (480)
T ss_dssp ------TTCSEEEECCCTT
T ss_pred ------CCCCEEEECCCcc
Confidence 3689999999863
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.12 Score=45.10 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=73.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+.|+|| |.+|..++..|+..+ ..|+++|+++++++....++....+-. ..+.+.. | +.++
T Consensus 2 KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~---~~~~v~~-~--~~~a---------- 64 (310)
T 2xxj_A 2 KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFA---HPVWVWA-G--SYGD---------- 64 (310)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGS---CCCEEEE-C--CGGG----------
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhc---CCeEEEE-C--CHHH----------
Confidence 5789998 999999999999887 589999999998887777776532211 1223222 2 2221
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhc-CCCCeEEEEcCCccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR-GSPSRIINVNSVMHY 211 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~-~~~g~Iv~isS~~~~ 211 (298)
+.+-|++|..+|..... .++.+ +.+..|.- +.+.+.+.+.+ ...+.|+++|.....
T Consensus 65 -~~~aD~Vii~ag~~~~~---g~~r~---dl~~~n~~----i~~~i~~~i~~~~p~a~iiv~tNPv~~ 121 (310)
T 2xxj_A 65 -LEGARAVVLAAGVAQRP---GETRL---QLLDRNAQ----VFAQVVPRVLEAAPEAVLLVATNPVDV 121 (310)
T ss_dssp -GTTEEEEEECCCCCCCT---TCCHH---HHHHHHHH----HHHHHHHHHHHHCTTCEEEECSSSHHH
T ss_pred -hCCCCEEEECCCCCCCC---CcCHH---HHHHhhHH----HHHHHHHHHHHHCCCcEEEEecCchHH
Confidence 34789999999975321 22322 23444433 44444444444 345788888765433
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.015 Score=50.47 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=35.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN 98 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~ 98 (298)
.+++||.++|.|+++-.|+.+|..|++.|++|.++.|+
T Consensus 161 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~ 198 (300)
T 4a26_A 161 IEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG 198 (300)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 36889999999999999999999999999999999874
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.02 Score=48.52 Aligned_cols=77 Identities=17% Similarity=0.234 Sum_probs=57.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 67 TCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
.+.|.|+++.+|+.+++.+.+. |+.|+.+.+..+.++++.. . .. -+.+|++.++.+.+.++.+.+.
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~---~---------~~-DvvIDfT~p~a~~~~~~~a~~~ 68 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTD---G---------NT-EVVIDFTHPDVVMGNLEFLIDN 68 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHH---T---------TC-CEEEECSCTTTHHHHHHHHHHT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhc---c---------CC-cEEEEccChHHHHHHHHHHHHc
Confidence 4889999999999999999866 8888866544444443321 1 11 2678999999999888887776
Q ss_pred cCCccEEEEccCC
Q 022369 146 LGPLHVLINNAGI 158 (298)
Q Consensus 146 ~g~idilVnnag~ 158 (298)
.++++|-..|.
T Consensus 69 --g~~~VigTTG~ 79 (245)
T 1p9l_A 69 --GIHAVVGTTGF 79 (245)
T ss_dssp --TCEEEECCCCC
T ss_pred --CCCEEEcCCCC
Confidence 68998888774
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.1 Score=45.58 Aligned_cols=118 Identities=15% Similarity=0.085 Sum_probs=69.1
Q ss_pred EEEEeCCCCchHHHHHHHHHHc--CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAES--GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~--G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+.|.|+ |.+|..+|..|++. |.+|+++++++++++....++...........++... .| .+ +
T Consensus 2 kI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~d---~~----------~ 66 (310)
T 1guz_A 2 KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS-ND---YA----------D 66 (310)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE-SC---GG----------G
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEEC-CC---HH----------H
Confidence 4778898 99999999999985 7899999999988886654443211100001122221 22 11 1
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM 209 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~ 209 (298)
+.+-|++|.+++.... ...+ -.+.+..|.--.-.+.+.+.++ ...+.+++++...
T Consensus 67 -l~~aDvViiav~~p~~---~g~~---r~dl~~~n~~i~~~i~~~i~~~---~~~~~viv~tNP~ 121 (310)
T 1guz_A 67 -TANSDIVIITAGLPRK---PGMT---REDLLMKNAGIVKEVTDNIMKH---SKNPIIIVVSNPL 121 (310)
T ss_dssp -GTTCSEEEECCSCCCC---TTCC---HHHHHHHHHHHHHHHHHHHHHH---CSSCEEEECCSSH
T ss_pred -HCCCCEEEEeCCCCCC---CCCC---HHHHHHHHHHHHHHHHHHHHHh---CCCcEEEEEcCch
Confidence 2478999999986321 1111 2244555554444555554444 2346777776543
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.066 Score=46.83 Aligned_cols=116 Identities=12% Similarity=0.152 Sum_probs=71.4
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 68 CIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
+.|+|| |.+|..++..++..|. .|++.|+++++++....++.......+...++... .| .+ .+
T Consensus 2 I~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t-~d---~~-----------a~ 65 (308)
T 2d4a_B 2 ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGS-NS---YE-----------DM 65 (308)
T ss_dssp EEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SC---GG-----------GG
T ss_pred EEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEEC-CC---HH-----------Hh
Confidence 678898 9999999999998887 79999999998887666665532110111223321 22 11 13
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhc-CCCCeEEEEcCCc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR-GSPSRIINVNSVM 209 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~-~~~g~Iv~isS~~ 209 (298)
.+-|++|..+|.... + .++.+ +.+..| .-+.+.+.+.+.+ ...+.++++|...
T Consensus 66 ~~aD~Vi~~ag~~~k-~--G~~r~---dl~~~n----~~i~~~i~~~i~~~~p~a~iiv~tNPv 119 (308)
T 2d4a_B 66 RGSDIVLVTAGIGRK-P--GMTRE---QLLEAN----ANTMADLAEKIKAYAKDAIVVITTNPV 119 (308)
T ss_dssp TTCSEEEECCSCCCC-S--SCCTH---HHHHHH----HHHHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred CCCCEEEEeCCCCCC-C--CCcHH---HHHHHH----HHHHHHHHHHHHHHCCCeEEEEeCCch
Confidence 478999999998542 1 22222 223333 3355555555554 3456778876644
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.01 Score=52.53 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=54.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.++++|.|+ +.+|..++++|.++|. |++++++++..+ ..+ ..+.++..|.+|++..+++
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~------------~~~~~i~gd~~~~~~L~~a------ 173 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK-VLR------------SGANFVHGDPTRVSDLEKA------ 173 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH------------TTCEEEESCTTSHHHHHHT------
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh------------CCcEEEEeCCCCHHHHHhc------
Confidence 467999997 8999999999999999 999999998876 421 1467888999999876543
Q ss_pred ccCCccEEEEccC
Q 022369 145 RLGPLHVLINNAG 157 (298)
Q Consensus 145 ~~g~idilVnnag 157 (298)
...+.|.+|...+
T Consensus 174 ~i~~a~~vi~~~~ 186 (336)
T 1lnq_A 174 NVRGARAVIVDLE 186 (336)
T ss_dssp CSTTEEEEEECCS
T ss_pred ChhhccEEEEcCC
Confidence 1235677766543
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.013 Score=50.55 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=34.6
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN 98 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~ 98 (298)
.+++||.++|.|+++-.|+.+|+.|.++|++|.++.|+
T Consensus 157 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~ 194 (285)
T 3l07_A 157 IKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF 194 (285)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence 36889999999999999999999999999999988765
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.039 Score=47.56 Aligned_cols=86 Identities=15% Similarity=0.081 Sum_probs=55.7
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHH-------HHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQK-------WQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+++.|.|+ |.+|..+|+.|++.|++|++++|++++.+.+.+. ..+... ...++..-+.+...++++
T Consensus 2 ~~i~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~------~aDvvi~~vp~~~~~~~v 74 (287)
T 3pef_A 2 QKFGFIGL-GIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVE------SCPVTFAMLADPAAAEEV 74 (287)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHH------HCSEEEECCSSHHHHHHH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHh------cCCEEEEEcCCHHHHHHH
Confidence 35667764 8999999999999999999999999888776532 111111 122333445556677777
Q ss_pred H---HHHhcccCCccEEEEccCC
Q 022369 139 S---EAWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 139 ~---~~~~~~~g~idilVnnag~ 158 (298)
+ +++.....+=.++|++.++
T Consensus 75 ~~~~~~l~~~l~~~~~vi~~st~ 97 (287)
T 3pef_A 75 CFGKHGVLEGIGEGRGYVDMSTV 97 (287)
T ss_dssp HHSTTCHHHHCCTTCEEEECSCC
T ss_pred HcCcchHhhcCCCCCEEEeCCCC
Confidence 6 5555443333566766443
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.021 Score=52.46 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=45.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc-------------------hHHHHHHHHHHHhhcCCCCCccEE
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL-------------------KAANELIQKWQEEWSGKGLPLNIE 123 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 123 (298)
++..|+|.|+ ||+|.++++.|+..|. ++.++|.+. .+.+.+.+.+++..+. .++.
T Consensus 39 ~~~~VlvvG~-GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~----v~v~ 113 (434)
T 1tt5_B 39 DTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN----CNVV 113 (434)
T ss_dssp HTCCEEEECS-STHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTT----CCCE
T ss_pred cCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCC----CEEE
Confidence 4678999987 7899999999999998 899986431 4677777777775443 3555
Q ss_pred EEEcCCC
Q 022369 124 AMELDLL 130 (298)
Q Consensus 124 ~~~~D~s 130 (298)
.+..++.
T Consensus 114 ~~~~~i~ 120 (434)
T 1tt5_B 114 PHFNKIQ 120 (434)
T ss_dssp EEESCGG
T ss_pred EEecccc
Confidence 5555443
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.018 Score=49.67 Aligned_cols=40 Identities=23% Similarity=0.329 Sum_probs=36.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~ 100 (298)
.++.||.++|.|++.-+|+.+|+.|++.|++|.++.++.+
T Consensus 155 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~ 194 (288)
T 1b0a_A 155 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTK 194 (288)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCS
T ss_pred CCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCch
Confidence 3688999999999999999999999999999999976643
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.066 Score=50.82 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=47.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
..++++|.|.+ -.|..+|+.|.+.|..|++++.+++..++..+. ..+.++..|.++++..++
T Consensus 126 ~~~hviI~G~g-~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~-----------~~~~~i~Gd~~~~~~L~~ 187 (565)
T 4gx0_A 126 TRGHILIFGID-PITRTLIRKLESRNHLFVVVTDNYDQALHLEEQ-----------EGFKVVYGSPTDAHVLAG 187 (565)
T ss_dssp CCSCEEEESCC-HHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHS-----------CSSEEEESCTTCHHHHHH
T ss_pred cCCeEEEECCC-hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHh-----------cCCeEEEeCCCCHHHHHh
Confidence 34678888875 699999999999999999999998877665332 035677788888776554
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.051 Score=47.72 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=56.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHH-------HHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQK-------WQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
+.+++.|.|+ |.+|..+|+.|++.|++|++++|++++.+++.+. ..+... ...++..-+.+...++
T Consensus 30 ~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~------~aDvVi~~vp~~~~~~ 102 (320)
T 4dll_A 30 YARKITFLGT-GSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAAR------DADIVVSMLENGAVVQ 102 (320)
T ss_dssp CCSEEEEECC-TTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHT------TCSEEEECCSSHHHHH
T ss_pred CCCEEEEECc-cHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHh------cCCEEEEECCCHHHHH
Confidence 3456777755 8899999999999999999999999888776432 111111 1223334445566677
Q ss_pred HHHH--HHhcccCCccEEEEccCC
Q 022369 137 RFSE--AWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 137 ~~~~--~~~~~~g~idilVnnag~ 158 (298)
.++. ++.....+=.++|++...
T Consensus 103 ~v~~~~~~~~~l~~~~~vi~~st~ 126 (320)
T 4dll_A 103 DVLFAQGVAAAMKPGSLFLDMASI 126 (320)
T ss_dssp HHHTTTCHHHHCCTTCEEEECSCC
T ss_pred HHHcchhHHhhCCCCCEEEecCCC
Confidence 6665 444443344566666543
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.079 Score=49.18 Aligned_cols=128 Identities=7% Similarity=0.067 Sum_probs=75.1
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHc-----CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAES-----GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~-----G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
...+.|.||+++.|.++|..|+++ +..|+++|+++++++...+......+..+...++..- +|.+ +.+
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t----~D~~---eal 100 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT----TDPE---EAF 100 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE----SCHH---HHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEE----CCHH---HHH
Confidence 346888898888899999999988 6689999999998887543333221222222233331 2321 111
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhh----------------chHHHHHHHHHhhhhhcC-CCCeE
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN----------------HLAPALLSILLFPSLIRG-SPSRI 202 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN----------------~~~~~~l~~~~lp~m~~~-~~g~I 202 (298)
.+-|++|..+|..... ...-++.+..+ ..-++-+.+.+.+.|.+. ..+-|
T Consensus 101 -------~~AD~VViaag~~~~~------g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~i 167 (472)
T 1u8x_X 101 -------TDVDFVMAHIRVGKYA------MRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWM 167 (472)
T ss_dssp -------SSCSEEEECCCTTHHH------HHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred -------cCCCEEEEcCCCcccc------ccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEE
Confidence 3689999999974311 11112222111 223344566666666664 35678
Q ss_pred EEEcCCcccc
Q 022369 203 INVNSVMHYV 212 (298)
Q Consensus 203 v~isS~~~~~ 212 (298)
+++|......
T Consensus 168 i~~TNPvdi~ 177 (472)
T 1u8x_X 168 LNYSNPAAIV 177 (472)
T ss_dssp EECCSCHHHH
T ss_pred EEeCCcHHHH
Confidence 8888766543
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.017 Score=50.20 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=34.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN 98 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~ 98 (298)
.++.||.++|.|++.-+|+.+|+.|++.|++|.++.++
T Consensus 161 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~ 198 (301)
T 1a4i_A 161 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK 198 (301)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence 36889999999999999999999999999999998755
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=95.49 E-value=0.02 Score=49.25 Aligned_cols=45 Identities=24% Similarity=0.450 Sum_probs=39.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~ 109 (298)
.++.++|.|+ ||.|++++..|++.|+ +|.++.|+.++.+++.+++
T Consensus 118 ~~~~vlvlGa-Ggaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~ 163 (271)
T 1npy_A 118 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY 163 (271)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHc
Confidence 3578999985 7999999999999998 8999999999988887665
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.28 Score=43.53 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=70.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC-------EEEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA-------HVVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLD 133 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~-------~Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 133 (298)
+..-.|.|+||+|+||..++..|+.... .+++.|.++ ++++-..-+++... ..........+ +..
T Consensus 22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~----~~~~~~~~~~~--~~~ 95 (345)
T 4h7p_A 22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCA----FPLLDKVVVTA--DPR 95 (345)
T ss_dssp CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTT----CTTEEEEEEES--CHH
T ss_pred CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcC----ccCCCcEEEcC--ChH
Confidence 3445799999999999999999997643 799999875 34555555665421 11122222221 221
Q ss_pred HHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC--CCCeEEEEcC
Q 022369 134 SVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG--SPSRIINVNS 207 (298)
Q Consensus 134 ~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~--~~g~Iv~isS 207 (298)
+.+.+-|++|..||+... ..++.+ +.++.|. .+.+.+.+.+.+. +...|+.+|.
T Consensus 96 ----------~a~~~advVvi~aG~prk---pGmtR~---DLl~~Na----~I~~~~~~~i~~~a~~~~~vlvvsN 151 (345)
T 4h7p_A 96 ----------VAFDGVAIAIMCGAFPRK---AGMERK---DLLEMNA----RIFKEQGEAIAAVAASDCRVVVVGN 151 (345)
T ss_dssp ----------HHTTTCSEEEECCCCCCC---TTCCHH---HHHHHHH----HHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred ----------HHhCCCCEEEECCCCCCC---CCCCHH---HHHHHhH----HHHHHHHHHHHhhccCceEEEEeCC
Confidence 113478999999998542 123433 4455564 3445555555542 2334555554
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.062 Score=46.24 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=56.5
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC---EEEEEEcCchHHHHHHHHH--------HHhhcCCCCCccEEEEEcCCCCHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA---HVVMAVRNLKAANELIQKW--------QEEWSGKGLPLNIEAMELDLLSLDS 134 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~---~Vil~~r~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~D~s~~~~ 134 (298)
+++.|.|+ |-+|.++++.|++.|+ +|++++|++++++.+.++. .+... ..++.++.+ .+..
T Consensus 4 ~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~----~aDvVilav---~p~~ 75 (280)
T 3tri_A 4 SNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGAL----NADVVVLAV---KPHQ 75 (280)
T ss_dssp SCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHS----SCSEEEECS---CGGG
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHh----cCCeEEEEe---CHHH
Confidence 45677776 8899999999999998 8999999999888776542 11111 124445444 3456
Q ss_pred HHHHHHHHhcc-cCCccEEEEccC
Q 022369 135 VVRFSEAWNGR-LGPLHVLINNAG 157 (298)
Q Consensus 135 v~~~~~~~~~~-~g~idilVnnag 157 (298)
++++++++... +..=.++|++++
T Consensus 76 ~~~vl~~l~~~~l~~~~iiiS~~a 99 (280)
T 3tri_A 76 IKMVCEELKDILSETKILVISLAV 99 (280)
T ss_dssp HHHHHHHHHHHHHTTTCEEEECCT
T ss_pred HHHHHHHHHhhccCCCeEEEEecC
Confidence 77777777654 332237777654
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=95.41 E-value=0.025 Score=54.30 Aligned_cols=81 Identities=21% Similarity=0.276 Sum_probs=54.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc-------------------hHHHHHHHHHHHhhcCCCCCccEE
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL-------------------KAANELIQKWQEEWSGKGLPLNIE 123 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 123 (298)
.+..|+|.|+ ||+|.++++.|+..|. ++.++|.+. .+.+.+.+.+++.. ...++.
T Consensus 16 ~~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iN----P~v~V~ 90 (640)
T 1y8q_B 16 AGGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFY----PKANIV 90 (640)
T ss_dssp HHCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTC----TTCEEE
T ss_pred hcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHC----CCCeEE
Confidence 3478999987 7999999999999998 899998642 34555555555543 335777
Q ss_pred EEEcCCCCHHHHHHHHHHHhcccCCccEEEEcc
Q 022369 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNA 156 (298)
Q Consensus 124 ~~~~D~s~~~~v~~~~~~~~~~~g~idilVnna 156 (298)
.+..+++.......+ +.+.|++|++.
T Consensus 91 a~~~~i~~~~~~~~~-------~~~~DlVvda~ 116 (640)
T 1y8q_B 91 AYHDSIMNPDYNVEF-------FRQFILVMNAL 116 (640)
T ss_dssp EEESCTTSTTSCHHH-------HTTCSEEEECC
T ss_pred EEecccchhhhhHhh-------hcCCCEEEECC
Confidence 777777543211111 23678888764
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.35 Score=42.28 Aligned_cols=117 Identities=14% Similarity=0.101 Sum_probs=69.1
Q ss_pred EEEEeCCCCchHHHHHHHHHHc-C--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 67 TCIVTGSTSGIGREIARQLAES-G--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~-G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+.|+||+|.+|.+++..|+.+ + ..++++|+++ +++....+++.. ....++..+. .-.+.++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~----~~~~~v~~~~-~~~~~~~--------- 66 (312)
T 3hhp_A 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHI----PTAVKIKGFS-GEDATPA--------- 66 (312)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTS----CSSEEEEEEC-SSCCHHH---------
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCC----CCCceEEEec-CCCcHHH---------
Confidence 4789999999999999999886 5 4899999987 455444455431 1111232221 1112221
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM 209 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~ 209 (298)
+.+.|++|..||.... ..++ =.+.++.|.--.-.+.+.+..+ ...+.++++|...
T Consensus 67 --~~~aDivii~ag~~rk---pG~~---R~dll~~N~~I~~~i~~~i~~~---~p~a~vlvvtNPv 121 (312)
T 3hhp_A 67 --LEGADVVLISAGVARK---PGMD---RSDLFNVNAGIVKNLVQQVAKT---CPKACIGIITNPV 121 (312)
T ss_dssp --HTTCSEEEECCSCSCC---TTCC---HHHHHHHHHHHHHHHHHHHHHH---CTTSEEEECSSCH
T ss_pred --hCCCCEEEEeCCCCCC---CCCC---HHHHHHHHHHHHHHHHHHHHHH---CCCcEEEEecCcc
Confidence 2378999999997532 1222 3445555654444444443332 2356777777644
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.16 Score=47.27 Aligned_cols=43 Identities=28% Similarity=0.306 Sum_probs=36.1
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQ 110 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~ 110 (298)
.+.|.|+ |-+|..+|..|++.|++|++.++++++++...+.+.
T Consensus 7 kVgVIGa-G~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~ 49 (483)
T 3mog_A 7 TVAVIGS-GTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIH 49 (483)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHH
T ss_pred EEEEECc-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHH
Confidence 3445555 889999999999999999999999999988776543
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.17 E-value=0.21 Score=43.74 Aligned_cols=76 Identities=20% Similarity=0.078 Sum_probs=52.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+.|.|+ |.+|.++|..|++.|. +|+++++++++++.....+....... ...++. . ++.+.
T Consensus 2 kI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~-~~~~i~--~---~d~~~---------- 64 (319)
T 1a5z_A 2 KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFT-RRANIY--A---GDYAD---------- 64 (319)
T ss_dssp EEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGS-CCCEEE--E---CCGGG----------
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhc-CCcEEE--e---CCHHH----------
Confidence 4778898 9999999999999998 99999999988887665554432210 011222 1 22221
Q ss_pred ccCCccEEEEccCCCC
Q 022369 145 RLGPLHVLINNAGIFS 160 (298)
Q Consensus 145 ~~g~idilVnnag~~~ 160 (298)
+.+.|++|.+++...
T Consensus 65 -~~~aDvViiav~~~~ 79 (319)
T 1a5z_A 65 -LKGSDVVIVAAGVPQ 79 (319)
T ss_dssp -GTTCSEEEECCCCCC
T ss_pred -hCCCCEEEEccCCCC
Confidence 236899999998743
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 298 | ||||
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 3e-38 | |
| d1yb1a_ | 244 | c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase | 5e-35 | |
| d2d1ya1 | 248 | c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {T | 4e-33 | |
| d1zk4a1 | 251 | c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase | 2e-32 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 3e-32 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 3e-32 | |
| d1wmaa1 | 275 | c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydrox | 6e-32 | |
| d1gz6a_ | 302 | c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase do | 2e-31 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 4e-31 | |
| d1hdca_ | 254 | c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr | 6e-31 | |
| d2ae2a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 7e-31 | |
| d1vl8a_ | 251 | c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga | 1e-30 | |
| d1hxha_ | 253 | c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge | 3e-30 | |
| d1xq1a_ | 259 | c.2.1.2 (A:) Tropinone reductase {Thale cress (Ara | 3e-30 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 4e-30 | |
| d2ew8a1 | 247 | c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenas | 6e-30 | |
| d2gdza1 | 254 | c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrog | 8e-30 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 7e-29 | |
| d1ulsa_ | 242 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 7e-29 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 1e-28 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 2e-28 | |
| d1xhla_ | 274 | c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh | 3e-28 | |
| d1zmta1 | 252 | c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Ag | 7e-28 | |
| d1nffa_ | 244 | c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob | 1e-27 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 2e-27 | |
| d1sbya1 | 254 | c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase | 4e-27 | |
| d1xu9a_ | 269 | c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase | 3e-26 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 5e-26 | |
| d2c07a1 | 251 | c.2.1.2 (A:54-304) beta-keto acyl carrier protein | 2e-25 | |
| d1geea_ | 261 | c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megat | 9e-25 | |
| d1iy8a_ | 258 | c.2.1.2 (A:) Levodione reductase {Corynebacterium | 1e-24 | |
| d2rhca1 | 257 | c.2.1.2 (A:5-261) beta-keto acyl carrier protein r | 2e-24 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 2e-24 | |
| d2bd0a1 | 240 | c.2.1.2 (A:2-241) Bacterial sepiapterin reductase | 2e-24 | |
| d1ja9a_ | 259 | c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reduc | 3e-24 | |
| d1fmca_ | 255 | c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase | 4e-24 | |
| d1zema1 | 260 | c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba | 1e-23 | |
| d1ae1a_ | 258 | c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu | 1e-23 | |
| d1gega_ | 255 | c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl | 2e-23 | |
| d1mxha_ | 266 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 3e-23 | |
| d1bdba_ | 276 | c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy | 4e-23 | |
| d1q7ba_ | 243 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 4e-23 | |
| d1w6ua_ | 294 | c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr | 9e-23 | |
| d2ag5a1 | 245 | c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami | 2e-22 | |
| d1edoa_ | 244 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 2e-22 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 3e-22 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 1e-21 | |
| d1g0oa_ | 272 | c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase | 2e-21 | |
| d1oaaa_ | 259 | c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus mus | 5e-21 | |
| d1uzma1 | 237 | c.2.1.2 (A:9-245) beta-keto acyl carrier protein r | 2e-20 | |
| d1jtva_ | 285 | c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi | 5e-20 | |
| d1snya_ | 248 | c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly | 3e-18 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 8e-18 | |
| d2o23a1 | 248 | c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydr | 1e-17 | |
| d1uaya_ | 241 | c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogena | 4e-17 | |
| d1o5ia_ | 234 | c.2.1.2 (A:) beta-keto acyl carrier protein reduct | 9e-17 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 3e-16 | |
| d1e7wa_ | 284 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 8e-15 | |
| d1ulua_ | 256 | c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermoph | 5e-14 | |
| d1fjha_ | 257 | c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase | 8e-12 | |
| d1qsga_ | 258 | c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli | 3e-11 | |
| d1uh5a_ | 329 | c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite | 2e-10 | |
| d2fr1a1 | 259 | c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI | 2e-09 | |
| d2pd4a1 | 274 | c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacte | 2e-08 | |
| d2h7ma1 | 268 | c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacteri | 7e-08 | |
| d1jaya_ | 212 | c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase | 2e-07 | |
| d1d7oa_ | 297 | c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (B | 2e-07 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-06 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 3e-05 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 7e-05 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 1e-04 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 2e-04 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-04 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 3e-04 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 7e-04 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 0.001 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 0.003 |
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 133 bits (336), Expect = 3e-38
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 20/216 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG++ GIG +AR L + G VV R + EL E G P +
Sbjct: 12 LALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEEL----AAECKSAGYPGTLIPYR 67
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
DL + + ++ A + + + INNAG+ S G+++ VN LA ++
Sbjct: 68 CDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSIC 127
Query: 187 SILLFPSLI--RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
+ + S+ IIN+NS+ + + YS +K A
Sbjct: 128 TREAYQSMKERNVDDGHIININSMSGHRVL-------------PLSVTHFYSATKYAVTA 174
Query: 245 FSSILQKRL-PAESGINVVCVSPGIVSTNVARDLPK 279
+ L++ L A++ I C+SPG+V T A L
Sbjct: 175 LTEGLRQELREAQTHIRATCISPGVVETQFAFKLHD 210
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Score = 125 bits (314), Expect = 5e-35
Identities = 46/212 (21%), Positives = 84/212 (39%), Gaps = 23/212 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG+ GIGR A + A+ + +V+ N E K KGL +
Sbjct: 9 IVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC------KGLGAKVHTFV 62
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+D + + + ++ +G + +L+NNAG+ + E+ +VN LA
Sbjct: 63 VDCSNREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWT 122
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ P++ + + I+ V S +G L+ Y SK A + F
Sbjct: 123 TKAFLPAMTKNNHGHIVTVAS---------------AAGHVSVPFLLAYCSSKFAAVGFH 167
Query: 247 SILQKRLPAE--SGINVVCVSPGIVSTNVARD 276
L L A +G+ C+ P V+T ++
Sbjct: 168 KTLTDELAALQITGVKTTCLCPNFVNTGFIKN 199
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Score = 119 bits (301), Expect = 4e-33
Identities = 53/211 (25%), Positives = 78/211 (36%), Gaps = 28/211 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG GIGR IA+ A GA V + E+ + + +
Sbjct: 7 GVLVTGGARGIGRAIAQAFAREGALVALCDLR-PEGKEVAEA-----------IGGAFFQ 54
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+DL VRF E LG + VL+NNA I + G + ++VN AP L
Sbjct: 55 VDLEDERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHL 114
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
S L + + I+NV SV + Y+ SK + +
Sbjct: 115 SALAAREMRKVGGGAIVNVASVQGLFAEQEN---------------AAYNASKGGLVNLT 159
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDL 277
L L A I V V+PG ++T +
Sbjct: 160 RSLALDL-APLRIRVNAVAPGAIATEAVLEA 189
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Score = 118 bits (296), Expect = 2e-32
Identities = 53/214 (24%), Positives = 85/214 (39%), Gaps = 24/214 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
I+TG T GIG IA + E GA V++ R+ + + G P I+ +
Sbjct: 8 VAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKS-------VGTPDQIQFFQ 60
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D D + +A GP+ L+NNAGI ++ + + + + VN
Sbjct: 61 HDSSDEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFG 120
Query: 187 SILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ L + +G + IIN++S+ +VG SL Y+ SK A
Sbjct: 121 TRLGIQRMKNKGLGASIINMSSIEGFVGD---------------PSLGAYNASKGAVRIM 165
Query: 246 SSILQKRL-PAESGINVVCVSPGIVSTNVARDLP 278
S + + V V PG + T + DLP
Sbjct: 166 SKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLP 199
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 118 bits (296), Expect = 3e-32
Identities = 48/215 (22%), Positives = 82/215 (38%), Gaps = 23/215 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
I+TGS++GIGR A A GA V + R+ + E Q+ + N+ ++
Sbjct: 7 VAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQ---NVNSVV 63
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKF----SKDGYEEHMQVNHLA 182
D+ + G+ G L +L+NNAG K S + Y+ + +N +
Sbjct: 64 ADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRS 123
Query: 183 PALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
L+ P L + ++ SG YS +K A
Sbjct: 124 VIALTKKAVPHLSSTKGEIVNI---------------SSIASGLHATPDFPYYSIAKAAI 168
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
+++ L + GI V +SPG+V+T +
Sbjct: 169 DQYTRNTAIDL-IQHGIRVNSISPGLVATGFGSAM 202
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 118 bits (295), Expect = 3e-32
Identities = 50/214 (23%), Positives = 84/214 (39%), Gaps = 18/214 (8%)
Query: 67 TCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124
+ +VTG+ GIG + +QL + H++ R+++ A EL +
Sbjct: 5 SVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI---------KDSRVHV 55
Query: 125 MELDLLSLDSVVRFSEAWNGRLG--PLHVLINNAGIF-SIGEPQKFSKDGYEEHMQVNHL 181
+ L + S+ F +G L +LINNAG+ S G + ++ E + VN
Sbjct: 56 LPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTT 115
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS---GRRKYTSLMGYSGS 238
+ LL+ L P L + + SV + + ++ ++ Y S
Sbjct: 116 SVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNTSGSAQFPVLAYRMS 175
Query: 239 KLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272
K A F L L + + VV PG V TN
Sbjct: 176 KAAINMFGRTLAVDL-KDDNVLVVNFCPGWVQTN 208
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 275 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 117 bits (294), Expect = 6e-32
Identities = 52/238 (21%), Positives = 82/238 (34%), Gaps = 38/238 (15%)
Query: 69 IVTGSTSGIGREIARQLA-ESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMEL 127
+VTG GIG I R L VV+ R++ +Q+ Q E L+ +L
Sbjct: 7 LVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG------LSPRFHQL 60
Query: 128 DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLS 187
D+ L S+ + G L VL+NNAGI E M+ N +
Sbjct: 61 DIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVC 120
Query: 188 ILLFPSLIRGSPSRIINVNSVMHYVGFVDT--------------------------EDMN 221
L P + R++NV+S+M ED
Sbjct: 121 TELLPLIKPQ--GRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTK 178
Query: 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAE---SGINVVCVSPGIVSTNVARD 276
+++ Y +K+ S I ++L + I + PG V T++A
Sbjct: 179 KGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAGP 236
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 117 bits (293), Expect = 2e-31
Identities = 38/213 (17%), Positives = 77/213 (36%), Gaps = 16/213 (7%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+ G+GR A AE GA VV+ + + +
Sbjct: 9 VVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAV 68
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+ S+++ + + G + V++NNAGI + S + ++ +V+ +
Sbjct: 69 ANYDSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQV 128
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ + + + + RII S SG YS +KL + +
Sbjct: 129 TRAAWDHMKKQNYGRIIMTAS---------------ASGIYGNFGQANYSAAKLGLLGLA 173
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
+ L ++ I+ ++P S +P+
Sbjct: 174 NTLVIEG-RKNNIHCNTIAPNAGSRMTETVMPE 205
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 114 bits (287), Expect = 4e-31
Identities = 53/219 (24%), Positives = 90/219 (41%), Gaps = 13/219 (5%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T IVTG GIG R +A +GA+V + R+ A E+ +K +E+ K +A +
Sbjct: 11 TIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVK-----TKAYQ 65
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ + D V + + + LGP+ LI NAG+ + + + + + VN
Sbjct: 66 CDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNT 125
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ ++ I V S M + S + + Y+ SK A
Sbjct: 126 CRAVAKLWLQKQQKGSIVVTSSMSS-------QIINQSSLNGSLTQVFYNSSKAACSNLV 178
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
L A +GI V +SPG V+T+ + K ++
Sbjct: 179 KGLAAEW-ASAGIRVNALSPGYVNTDQTAHMDKKIRDHQ 216
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Score = 114 bits (286), Expect = 6e-31
Identities = 50/230 (21%), Positives = 81/230 (35%), Gaps = 29/230 (12%)
Query: 64 NDL---TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPL 120
NDL T I+TG G+G E ARQ +GA VV+A + ++ L
Sbjct: 1 NDLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARE---------LGD 51
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNH 180
LD+ + R G + L+NNAGI + + S + + + +++N
Sbjct: 52 AARYQHLDVTIEEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINL 111
Query: 181 LAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
+ + P++ I+N++S +G Y SK
Sbjct: 112 TGVFIGMKTVIPAMKDAGGGSIVNISS---------------AAGLMGLALTSSYGASKW 156
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTN-VARDLPKIVQAAYHLIP 289
S + L I V V PG+ T A + + Y P
Sbjct: 157 GVRGLSKLAAVEL-GTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTP 205
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Score = 114 bits (286), Expect = 7e-31
Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 23/214 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTG + GIG I +LA GA V RN K N+ + +W+ + +EA
Sbjct: 10 TALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG------FKVEASV 63
Query: 127 LDLLSLDSVVR-FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
DL S + N G L++L+NNAGI E + ++ + Y M +N A
Sbjct: 64 CDLSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYH 123
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
LS+L P L ++ ++S VSG Y +K A +
Sbjct: 124 LSVLAHPFLKASERGNVVFISS---------------VSGALAVPYEAVYGATKGAMDQL 168
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
+ L A+ I V V PG+++T++ +
Sbjct: 169 TRCLAFEW-AKDNIRVNGVGPGVIATSLVEMTIQ 201
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Score = 113 bits (284), Expect = 1e-30
Identities = 52/226 (23%), Positives = 90/226 (39%), Gaps = 23/226 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG + G+G IA+ LAE+G VV+A RNL+ A+E QK E++ + A
Sbjct: 7 VALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVE-----TMAFR 61
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ + + V + EA + G L ++N AGI ++F D + + ++VN
Sbjct: 62 CDVSNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVN------- 114
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
L + + ++ ++ Y+ SK +
Sbjct: 115 -------LFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKGGVASLT 167
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIP 289
L K GI V ++PG T + + P+ + IP
Sbjct: 168 KALAKEW-GRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIP 212
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 112 bits (281), Expect = 3e-30
Identities = 46/212 (21%), Positives = 77/212 (36%), Gaps = 26/212 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG SG+G E+ + L GA V + N A +L E + + +
Sbjct: 8 VALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLA----AELGERSM-----FVR 58
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ S A RLG L+VL+NNAGI G+ + + + +++N + +
Sbjct: 59 HDVSSEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIG 118
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
++ IIN+ SV ++ GYS SK A +
Sbjct: 119 CQQGIAAMKETG-GSIINMASVSSWLP---------------IEQYAGYSASKAAVSALT 162
Query: 247 SILQKRL-PAESGINVVCVSPGIVSTNVARDL 277
I V + P + T + +
Sbjct: 163 RAAALSCRKQGYAIRVNSIHPDGIYTPMMQAS 194
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 112 bits (281), Expect = 3e-30
Identities = 51/226 (22%), Positives = 82/226 (36%), Gaps = 25/226 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTG T GIG I + A GA + RN NE + KWQ++ +
Sbjct: 10 TVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKK------GFQVTGSV 63
Query: 127 LDLLSLDSVVRFSEAWNGRL-GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
D + + + G L +LINN G ++ + + H+ N +
Sbjct: 64 CDASLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYH 123
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
LS L P L II ++S+ V YS +K A +
Sbjct: 124 LSQLAHPLLKASGCGNIIFMSSIAGVVSASV---------------GSIYSATKGALNQL 168
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIP 289
+ L A GI V+P +++T +A + + + P
Sbjct: 169 ARNLACE-WASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKP 213
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 111 bits (280), Expect = 4e-30
Identities = 55/227 (24%), Positives = 98/227 (43%), Gaps = 34/227 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+ GIGR+ + L SGA VV R L ++ IE +
Sbjct: 7 RALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP----------GIEPVC 56
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+DL D+ E G +GP+ +L+NNA + + + +K+ ++ VN + +
Sbjct: 57 VDLGDWDAT----EKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQV 112
Query: 187 SILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
S ++ +I RG P I+NV+S++ +V F + + YS +K A
Sbjct: 113 SQMVARDMINRGVPGSIVNVSSMVAHVTFPNL---------------ITYSSTKGAMTML 157
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIP 289
+ + L I V V+P +V T++ + + P+ + P
Sbjct: 158 TKAMAMEL-GPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHP 203
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Score = 111 bits (279), Expect = 6e-30
Identities = 47/213 (22%), Positives = 86/213 (40%), Gaps = 26/213 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRN-LKAANELIQKWQEEWSGKGLPLNIEAM 125
++TG +GIGR IA + A GA + +A A I+ L + +
Sbjct: 7 LAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRN---------LGRRVLTV 57
Query: 126 ELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
+ D+ V F + G +L+NNAGI+ + + + + +++ ++N + L
Sbjct: 58 KCDVSQPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFL 117
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
++ P + R RIIN+ S +++ + Y +K A I F
Sbjct: 118 MAKAFVPGMKRNGWGRIINLTSTTYWLKI---------------EAYTHYISTKAANIGF 162
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
+ L L + GI V ++P +V T
Sbjct: 163 TRALASDL-GKDGITVNAIAPSLVRTATTEASA 194
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Score = 111 bits (278), Expect = 8e-30
Identities = 46/221 (20%), Positives = 83/221 (37%), Gaps = 31/221 (14%)
Query: 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNI 122
VN +VTG+ GIGR A L GA V + NL+A + E++ +
Sbjct: 1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQ----KT 56
Query: 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLA 182
++ D+ + G L +L+NNAG+ + +E+ +Q+N ++
Sbjct: 57 LFIQCDVADQQQLRDTFRKVVDHFGRLDILVNNAGVNNEKN--------WEKTLQINLVS 108
Query: 183 PALLSILLFPSLIR---GSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
+ L + + G IIN++S+ + Y SK
Sbjct: 109 VISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMP---------------VAQQPVYCASK 153
Query: 240 LAQIKFSSILQKRL-PAESGINVVCVSPGIVSTNVARDLPK 279
+ F+ SG+ + + PG V+T + + K
Sbjct: 154 HGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEK 194
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 109 bits (273), Expect = 7e-29
Identities = 51/228 (22%), Positives = 95/228 (41%), Gaps = 23/228 (10%)
Query: 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPL 120
P ++ T I+TGS++GIGR A A+ GA+V + R+ + E Q + +
Sbjct: 1 PRFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEK--- 57
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKD----GYEEHM 176
+ ++ D+ + D + + + G + VL+NNAG D Y + +
Sbjct: 58 QVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTL 117
Query: 177 QVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYS 236
++N A ++ + P L+ + + V+G + + Y+
Sbjct: 118 KLNLQAVIEMTKKVKPHLVASKGEIVNVSSI---------------VAGPQAQPDFLYYA 162
Query: 237 GSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAA 284
+K A +++ L A+ GI V VSPG+V T + QA+
Sbjct: 163 IAKAALDQYTRSTAIDL-AKFGIRVNSVSPGMVETGFTNAMGMPDQAS 209
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Score = 108 bits (271), Expect = 7e-29
Identities = 41/220 (18%), Positives = 74/220 (33%), Gaps = 28/220 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG+ GIGR A+ GA +V E + + +
Sbjct: 7 AVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEA-----------VGAHPVV 55
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+D+ SV R LG L +++ AGI K + +E ++VN L+
Sbjct: 56 MDVADPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLV 115
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ ++ +P I+ S Y+ S + +
Sbjct: 116 AKAASEAMREKNPGSIVLTAS----------------RVYLGNLGQANYAASMAGVVGLT 159
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYH 286
L L GI V ++PG + T + +P+ V+
Sbjct: 160 RTLALEL-GRWGIRVNTLAPGFIETRMTAKVPEKVREKAI 198
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (270), Expect = 1e-28
Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 32/226 (14%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+ GIGR + L +GA VV R + L+++ IE +
Sbjct: 9 RVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP----------GIEPVC 58
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+DL ++ R + GP+ +L+NNA + + + +K+ ++ +VN A +
Sbjct: 59 VDLGDWEATERALGSV----GPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQV 114
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
S ++ LI I S +R T+ Y +K A +
Sbjct: 115 SQIVARGLIARGVPGAIVNVSSQ--------------CSQRAVTNHSVYCSTKGALDMLT 160
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIP 289
++ L I V V+P +V T++ + P + + IP
Sbjct: 161 KVMALEL-GPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIP 205
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (269), Expect = 2e-28
Identities = 49/214 (22%), Positives = 81/214 (37%), Gaps = 28/214 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG GIG I R SGA VV+ ++ L Q+ +
Sbjct: 8 VVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELP----------GAVFIL 57
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
D+ D V R G L ++NNAG + ++ S G+ + +++N L
Sbjct: 58 CDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYT 117
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
L+ L P L + +IN++S + G + Y +K A
Sbjct: 118 LTKLALPYLRKSQ-GNVINISS---------------LVGAIGQAQAVPYVATKGAVTAM 161
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
+ L + G+ V C+SPG + T + +L
Sbjct: 162 TKALALDE-SPYGVRVNCISPGNIWTPLWEELAA 194
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Score = 107 bits (269), Expect = 3e-28
Identities = 43/214 (20%), Positives = 79/214 (36%), Gaps = 21/214 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+ I+TGS++GIGR A A+ GA V + RN E Q+ + I A+
Sbjct: 6 SVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKA---GVPAEKINAVV 62
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIG--EPQKFSKDGYEEHMQVNHLAPA 184
D+ + G + +L+NNAG + Y++ ++N A
Sbjct: 63 ADVTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVI 122
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
+ + ++V+G + ++ Y+ +K A +
Sbjct: 123 EM---------------TQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACAKAALDQ 167
Query: 245 FSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
++ L + G+ V VSPG V+T +
Sbjct: 168 YTRCTAIDL-IQHGVRVNSVSPGAVATGFMGAMG 200
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Score = 106 bits (265), Expect = 7e-28
Identities = 38/212 (17%), Positives = 70/212 (33%), Gaps = 29/212 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T IVT G A +L+E+G V + K +EL +
Sbjct: 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA------------FAETYPQ 49
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
L +S EA G + VL++N +P K++ + Y ++ + P
Sbjct: 50 LKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFA 109
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
L + + + II + S + + L Y+ ++
Sbjct: 110 LVNAVASQMKKRKSGHIIFITSATPF---------------GPWKELSTYTSARAGACTL 154
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDL 277
++ L K L E I V + P + + +
Sbjct: 155 ANALSKEL-GEYNIPVFAIGPNYLHSEDSPYF 185
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 105 bits (262), Expect = 1e-27
Identities = 45/215 (20%), Positives = 78/215 (36%), Gaps = 25/215 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+V+G G+G R + GA VV + + + L +
Sbjct: 8 VALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAE---------LADAARYVH 58
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LD+ + G LHVL+NNAGI +IG + ++ ++ + VN L
Sbjct: 59 LDVTQPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLG 118
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ + IIN++S+ + GY+ +K A +
Sbjct: 119 IRAVVKPMKEAGRGSIINISSIEGL---------------AGTVACHGYTATKFAVRGLT 163
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPKIV 281
L SGI V + PG+V T + +P+ +
Sbjct: 164 KSTALEL-GPSGIRVNSIHPGLVKTPMTDWVPEDI 197
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 106 bits (265), Expect = 2e-27
Identities = 41/228 (17%), Positives = 89/228 (39%), Gaps = 23/228 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG +GIG+ I ++L E G++VV+A R L+ + Q + ++
Sbjct: 14 VAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANL-PPTKQARVIPIQ 72
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
++ + + V ++ G ++ L+NN G + + S G+ ++ N +
Sbjct: 73 CNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYM 132
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
++ S ++ I+ +V + + + ++ +
Sbjct: 133 CKAVYSSWMKEHGGSIV----------------NIIVPTKAGFPLAVHSGAARAGVYNLT 176
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDL-----PKIVQAAYHLIP 289
L A SGI + CV+PG++ + A + + ++ IP
Sbjct: 177 KSLALEW-ACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIP 223
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Score = 104 bits (260), Expect = 4e-27
Identities = 38/214 (17%), Positives = 72/214 (33%), Gaps = 33/214 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
I + GIG + +R+L + + + ++ L E +NI
Sbjct: 7 NVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTAL-----AELKAINPKVNITFHT 61
Query: 127 LDL-LSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
D+ + + + + +L + +LIN AGI + E + +N
Sbjct: 62 YDVTVPVAESKKLLKKIFDQLKTVDILINGAGILDDHQ--------IERTIAINFTGLVN 113
Query: 186 LSILLFP---SLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQ 242
+ + G I N+ SV + + YS SK A
Sbjct: 114 TTTAILDFWDKRKGGPGGIIANICSVTGFNA---------------IHQVPVYSASKAAV 158
Query: 243 IKFSSILQKRLPAESGINVVCVSPGIVSTNVARD 276
+ F++ L K +G+ ++PGI T +
Sbjct: 159 VSFTNSLAKLA-PITGVTAYSINPGITRTPLVHT 191
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (254), Expect = 3e-26
Identities = 48/211 (22%), Positives = 87/211 (41%), Gaps = 22/211 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
IVTG++ GIGRE+A LA+ GAHVV+ R+ + +++ E + + +
Sbjct: 16 KVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAA-----SAHYIA 70
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+ + +F +G L +LI N + + M+VN L+ +L
Sbjct: 71 GTMEDMTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVL 130
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
++ P L + + I+ V+S+ V Y + YS SK A F
Sbjct: 131 TVAALPMLKQSN-GSIVVVSSLAGKVA---------------YPMVAAYSASKFALDGFF 174
Query: 247 SILQKRL-PAESGINVVCVSPGIVSTNVARD 276
S ++K + +++ G++ T A
Sbjct: 175 SSIRKEYSVSRVNVSITLCVLGLIDTETAMK 205
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 101 bits (253), Expect = 5e-26
Identities = 43/231 (18%), Positives = 81/231 (35%), Gaps = 24/231 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
I+TG GIG A+ GA VV+A ++ I +
Sbjct: 8 VAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVC----NNIGSPD---VISFVH 60
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIG--EPQKFSKDGYEEHMQVNHLAPA 184
D+ + V + + G L ++ N G+ S + + ++ M +N
Sbjct: 61 CDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAF 120
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
L++ +I I+ S+ + + Y+ +K A +
Sbjct: 121 LVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHV--------------YTATKHAVLG 166
Query: 245 FSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFNP 295
++ L L E GI V CVSP IV++ + D+ + + + + N
Sbjct: 167 LTTSLCTEL-GEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANL 216
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 99.7 bits (248), Expect = 2e-25
Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 22/219 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+ GIGREIA+ LA+S +HV+ R K+ + ++ + K
Sbjct: 12 VALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEI------KSFGYESSGYA 65
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ + + + +L+NNAGI + D +E+ ++ N + +
Sbjct: 66 GDVSKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYI 125
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ + +I RIIN++S++ G V YS SK I F+
Sbjct: 126 TQPISKRMINNRYGRIINISSIVGLTGNVG---------------QANYSSSKAGVIGFT 170
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
L K L A I V ++PG +S+++ + + ++
Sbjct: 171 KSLAKEL-ASRNITVNAIAPGFISSDMTDKISEQIKKNI 208
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Score = 97.9 bits (243), Expect = 9e-25
Identities = 43/226 (19%), Positives = 88/226 (38%), Gaps = 23/226 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TGS++G+G+ +A + A A VV+ R+ + + + ++ G+ + A++
Sbjct: 9 VVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAI-----AVK 63
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ V+ ++ G L V+INNAG+ + + S + + + N L
Sbjct: 64 GDVTVESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLG 123
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
S + +M+ V + + + Y+ SK +
Sbjct: 124 SREAIK--------------YFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGGMKLMT 169
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIP 289
L A GI V + PG ++T + + P+ +IP
Sbjct: 170 ETLALEY-APKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIP 214
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Score = 97.5 bits (242), Expect = 1e-24
Identities = 40/213 (18%), Positives = 71/213 (33%), Gaps = 19/213 (8%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG SG+GR A +LA GA + + + + E +
Sbjct: 6 VVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDA----EVLTTV 61
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ V + A R G + NNAGI P + + + +
Sbjct: 62 ADVSDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSIN------ 115
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+RG + V +M G + V G R + GY+ +K + +
Sbjct: 116 --------LRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKHGVVGLT 167
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
GI + ++PG + T + + K
Sbjct: 168 RNSAVEY-GRYGIRINAIAPGAIWTPMVENSMK 199
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Score = 97.1 bits (241), Expect = 2e-24
Identities = 51/213 (23%), Positives = 88/213 (41%), Gaps = 20/213 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+TSGIG EIAR+L + G V + R + +++ +E + +
Sbjct: 4 VALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA------GVEADGRT 57
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ S+ + A R GP+ VL+NNAG G + + + + + ++ N +
Sbjct: 58 CDVRSVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRV 117
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ + M G ++ G++ YS SK + F+
Sbjct: 118 TKQVLK-------------AGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFT 164
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
L L A +GI V V PG V T +A + +
Sbjct: 165 KALGLEL-ARTGITVNAVCPGFVETPMAASVRE 196
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 97.2 bits (241), Expect = 2e-24
Identities = 48/211 (22%), Positives = 79/211 (37%), Gaps = 20/211 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTGSTSGIG IA LA GA +V+ A E ++ G +
Sbjct: 6 VAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGV----KVLYDG 61
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
DL ++V + ++G + +L+NNAGI + F + ++ + +N A
Sbjct: 62 ADLSKGEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHG 121
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ P + + RIIN + G + Y +K + F+
Sbjct: 122 TAAALPHMKKQGFGRIIN---------------IASAHGLVASANKSAYVAAKHGVVGFT 166
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDL 277
+ A GI + PG V T +
Sbjct: 167 KVTALET-AGQGITANAICPGWVRTPLVEKQ 196
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Score = 96.7 bits (240), Expect = 2e-24
Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 29/222 (13%)
Query: 69 IVTGSTSGIGREIARQLAESGAH-------VVMAVRNLKAANELIQKWQEEWSGKGLPLN 121
++TG+ GIGR IA + A + H +V++ R ++ + + E +
Sbjct: 5 LITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA------L 58
Query: 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHL 181
+ + D+ + V R + R G + L+NNAG+ G +++ ++ M N
Sbjct: 59 TDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLK 118
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
L+ LF + R I + SV F Y SK
Sbjct: 119 GTFFLTQALFALMERQHSGHIFFITSVAATKAFRH---------------SSIYCMSKFG 163
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQA 283
Q ++ + + + V PG V T + + +QA
Sbjct: 164 QRGLVETMRLYA-RKCNVRITDVQPGAVYTPMWGKVDDEMQA 204
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 96.4 bits (239), Expect = 3e-24
Identities = 40/211 (18%), Positives = 82/211 (38%), Gaps = 22/211 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+ TG+ GIGR IA +L GA VV+ + A E + ++ +G+ A++
Sbjct: 8 VALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGV-----AIQ 62
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ VV + G L +++N+G+ + + +++ +++ +N +
Sbjct: 63 ADISKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFV 122
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ RG + ++ + + Y+GSK A F
Sbjct: 123 AQQGLKHCRRGGRIIL----------------TSSIAAVMTGIPNHALYAGSKAAVEGFC 166
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDL 277
G+ V C++PG V T++ +
Sbjct: 167 RAFAVDC-GAKGVTVNCIAPGGVKTDMFDEN 196
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 96.3 bits (239), Expect = 4e-24
Identities = 50/225 (22%), Positives = 90/225 (40%), Gaps = 25/225 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
I+TG+ +GIG+EIA A +GA VV++ N AAN ++ + Q+ L A
Sbjct: 13 CAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQ------LGGQAFACR 66
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ S + ++ +LG + +L+NNAG +P + ++N + L
Sbjct: 67 CDITSEQELSALADFAISKLGKVDILVNNAGG-GGPKPFDMPMADFRRAYELNVFSFFHL 125
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
S L+ P + + I+ + S+ ++ A
Sbjct: 126 SQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKA---------------AASHLV 170
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIP 289
+ L E I V ++PG + T+ + + P+I Q P
Sbjct: 171 RNMAFDL-GEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTP 214
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Score = 94.9 bits (235), Expect = 1e-23
Identities = 47/219 (21%), Positives = 81/219 (36%), Gaps = 23/219 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
C+VTG+ IG A +LAE G + + N +A + +E + +
Sbjct: 7 VCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVRE------KGVEARSYV 60
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
D+ S ++V+ ++ G + L NNAG P Q + D + + +N
Sbjct: 61 CDVTSEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFH 120
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
+ + +I + RI+N S+ G + + Y SK A I
Sbjct: 121 VLKAVSRQMITQNYGRIVNTASMAGVKGPPN---------------MAAYGTSKGAIIAL 165
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAA 284
+ L A I V +SPG + + +QA
Sbjct: 166 TETAALDL-APYNIRVNAISPGYMGPGFMWERQVELQAK 203
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Score = 94.8 bits (235), Expect = 1e-23
Identities = 60/227 (26%), Positives = 93/227 (40%), Gaps = 23/227 (10%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTG + GIG I +LA GA V RN K +E ++ W+E+ LN+E
Sbjct: 8 TALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG------LNVEGSV 61
Query: 127 LDLLSLDSVVRFSEAWNGRL-GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPAL 185
DLLS + + G L++L+NNAG+ E + F++ Y M N A
Sbjct: 62 CDLLSRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYH 121
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
LS + +P L +I ++S+ + + SK A +
Sbjct: 122 LSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSA---------------SKGAINQM 166
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFI 292
+ L A+ I V V+PG++ T + K I FI
Sbjct: 167 TKSLACEW-AKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFI 212
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Score = 94.5 bits (234), Expect = 2e-23
Identities = 46/218 (21%), Positives = 78/218 (35%), Gaps = 21/218 (9%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG+ GIG+ IA +L + G V +A N A + + + + A++
Sbjct: 3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGG------HAVAVK 56
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
+D+ D V E LG V++NNAG+ + + + ++ +N
Sbjct: 57 VDVSDRDQVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWG 116
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ + +G L YS SK A +
Sbjct: 117 IQAAVE--------------AFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGLT 162
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAA 284
+ L A GI V PGIV T + ++ + V A
Sbjct: 163 QTAARDL-APLGITVNGYCPGIVKTPMWAEIDRQVSEA 199
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Score = 94.2 bits (233), Expect = 3e-23
Identities = 36/224 (16%), Positives = 62/224 (27%), Gaps = 3/224 (1%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG IG IA +L + G VV+ R+ + A + + L +
Sbjct: 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLS 62
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQV-NHLAPAL 185
L LD + G VL+NNA + + + L
Sbjct: 63 LSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAEL 122
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
L + ++ Y+ +K A
Sbjct: 123 FGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMTDLPLPGFCVYTMAKHALGGL 182
Query: 246 SSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIP 289
+ L A I V V+PG+ A + + +P
Sbjct: 183 TRAAALEL-APRHIRVNAVAPGLSLLPPAMP-QETQEEYRRKVP 224
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Score = 93.9 bits (233), Expect = 4e-23
Identities = 38/211 (18%), Positives = 74/211 (35%), Gaps = 32/211 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG SG+GR + + GA V + ++ + EL N+ +
Sbjct: 7 AVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETD---------HGDNVLGIV 57
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIG-----EPQKFSKDGYEEHMQVNHL 181
D+ SL+ + + R G + LI NAGI+ P++ ++E +N
Sbjct: 58 GDVRSLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVK 117
Query: 182 APALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLA 241
P+L+ + I +++ G Y+ +K A
Sbjct: 118 GYIHAVKACLPALVASRGNVIFTISNA----------------GFYPNGGGPLYTAAKHA 161
Query: 242 QIKFSSILQKRLPAESGINVVCVSPGIVSTN 272
+ L L + V V G ++++
Sbjct: 162 IVGLVRELAFEL--APYVRVNGVGSGGINSD 190
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Score = 93.3 bits (231), Expect = 4e-23
Identities = 53/219 (24%), Positives = 90/219 (41%), Gaps = 25/219 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+VTG++ GIGR IA LA GA V+ + A + L N + +
Sbjct: 6 IALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDY---------LGANGKGLM 56
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
L++ S+ E G + +L+NNAGI + + + + ++ N + L
Sbjct: 57 LNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRL 116
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
S + ++++ RII + SV+ +G Y+ +K I FS
Sbjct: 117 SKAVMRAMMKKRHGRIITIGSVVGTMGNGG---------------QANYAAAKAGLIGFS 161
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
L + A GI V V+PG + T++ R L +A
Sbjct: 162 KSLARE-VASRGITVNVVAPGFIETDMTRALSDDQRAGI 199
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Score = 93.3 bits (231), Expect = 9e-23
Identities = 35/217 (16%), Positives = 78/217 (35%), Gaps = 25/217 (11%)
Query: 59 PLPPVNDL---TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSG 115
+ P N +TG +G+G+ + L+ GA V+A R + ++ +
Sbjct: 16 AMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGN 75
Query: 116 KGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEH 175
K + A++ D+ D V G +++INNA I ++ S + ++
Sbjct: 76 K-----VHAIQCDVRDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTI 130
Query: 176 MQVNHLAPALLSILLFPSLI-RGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMG 234
+ A +++ + LI + +++ ++ G ++
Sbjct: 131 TDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGF---------------VVP 175
Query: 235 YSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
+ +K S L + G+ + PG + T
Sbjct: 176 SASAKAGVEAMSKSLAAEW-GKYGMRFNVIQPGPIKT 211
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Score = 91.7 bits (227), Expect = 2e-22
Identities = 47/226 (20%), Positives = 78/226 (34%), Gaps = 30/226 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
I+T + GIG+ A A GA V+ N EL + I+
Sbjct: 8 VIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY-----------PGIQTRV 56
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LD + + + + + L VL N AG G + ++ M +N + L+
Sbjct: 57 LD----VTKKKQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLM 112
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
P ++ IIN++S V S + + YS +K A I +
Sbjct: 113 IKAFLPKMLAQKSGNIINMSS--------------VASSVKGVVNRCVYSTTKAAVIGLT 158
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFI 292
+ + GI CV PG V T ++ + F+
Sbjct: 159 KSVAADF-IQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFL 203
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 91.7 bits (227), Expect = 2e-22
Identities = 49/217 (22%), Positives = 90/217 (41%), Gaps = 21/217 (9%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG++ GIG+ IA L ++G V++ A E + K E + G+ + D
Sbjct: 5 VVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAI-----TFGGD 59
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ V + G + V++NNAGI + K ++E + +N L +
Sbjct: 60 VSKEADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQ 119
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
+++ RIIN+ SV+ +G + Y+ +K I FS
Sbjct: 120 AATKIMMKKRKGRIINIASVVGLIGNIG---------------QANYAAAKAGVIGFSKT 164
Query: 249 LQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
+ A INV V PG +++++ L + ++
Sbjct: 165 AAREG-ASRNINVNVVCPGFIASDMTAKLGEDMEKKI 200
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 91.4 bits (226), Expect = 3e-22
Identities = 47/213 (22%), Positives = 81/213 (38%), Gaps = 24/213 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T ++TGS GIGR A GA V +A NL+AA + + A+
Sbjct: 7 TALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAE---------IGPAACAIA 57
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
LD+ S+ R R G + +L+NNA +F + + +++ Y+ +N +
Sbjct: 58 LDVTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFM 117
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ +++ +M +GRR + Y +K A I +
Sbjct: 118 MQAVAR--------------AMIAGGRGGKIINMASQAGRRGEALVGVYCATKAAVISLT 163
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
L GINV ++PG+V +
Sbjct: 164 QSAGLNL-IRHGINVNAIAPGVVDGEHWDGVDA 195
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 89.0 bits (220), Expect = 1e-21
Identities = 45/224 (20%), Positives = 75/224 (33%), Gaps = 29/224 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T +VTG+ SGIGR A GA +V R + E + L A+
Sbjct: 7 TILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA---------LEAEAIAVV 57
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
D+ +V G LH + + AG+ + +E+ ++VN L+
Sbjct: 58 ADVSDPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLV 117
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ L G + + + G Y+ KL + +
Sbjct: 118 ARKAGEVLEEGGSLVLTGSVAGLGAFGL------------------AHYAAGKLGVVGLA 159
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDL-PKIVQAAYHLIP 289
L L A G+ V + PG++ T + L P + P
Sbjct: 160 RTLALEL-ARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASP 202
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 89.0 bits (220), Expect = 2e-21
Identities = 47/231 (20%), Positives = 93/231 (40%), Gaps = 26/231 (11%)
Query: 53 HLQNPLPLPP----VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQK 108
+ P PL P + +VTG+ GIGRE+A +L G V++ N + E +
Sbjct: 2 YDAIPGPLGPQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVA 61
Query: 109 WQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFS 168
++ ++ ++ ++ +VR E G L ++ +N+G+ S G + +
Sbjct: 62 AIKKNGSD-----AACVKANVGVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVT 116
Query: 169 KDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRK 228
+ ++ +N ++ + L R+I + S+ V
Sbjct: 117 PEEFDRVFTINTRGQFFVAREAYKHLEI--GGRLILMGSITGQAKAVPK----------- 163
Query: 229 YTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
YSGSK A F+ + + A+ I V V+PG + T++ + +
Sbjct: 164 ---HAVYSGSKGAIETFARCMAIDM-ADKKITVNVVAPGGIKTDMYHAVCR 210
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 87.9 bits (217), Expect = 5e-21
Identities = 38/223 (17%), Positives = 71/223 (31%), Gaps = 30/223 (13%)
Query: 67 TCIVTGSTSGIGREIARQLAES---GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
C++TG++ G GR +A QLA G+ ++++ R+ +L +EE + L +
Sbjct: 8 VCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQL----KEELGAQQPDLKVV 63
Query: 124 AMELDLLSLDSV----VRFSEAWNGRLGPLHVLINNAGIFSIGEPQKF---SKDGYEEHM 176
DL + V E +LINNA +
Sbjct: 64 LAAADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYW 123
Query: 177 QVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYS 236
+N + L+ + VN + Y Y
Sbjct: 124 ALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCA-------------LQPYKGWGLYC 170
Query: 237 GSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279
K A+ +L E + V+ +PG + ++ + +
Sbjct: 171 AGKAARDMLYQVLAA---EEPSVRVLSYAPGPLDNDMQQLARE 210
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 85.5 bits (211), Expect = 2e-20
Identities = 50/225 (22%), Positives = 91/225 (40%), Gaps = 33/225 (14%)
Query: 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPL 120
PP + +VTG GIG IA++LA G V + R A L
Sbjct: 3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKGLF-------------- 48
Query: 121 NIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNH 180
+E+D+ D+V R A GP+ VL++NAG+ + + +++ +E+ + N
Sbjct: 49 ---GVEVDVTDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANL 105
Query: 181 LAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
++ S+ R R+I + SV G + Y+ SK
Sbjct: 106 TGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQ---------------ANYAASKA 150
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
I + + + +++ + V+PG + T++ R L + +Q
Sbjct: 151 GVIGMARSIARE-LSKANVTANVVAPGYIDTDMTRALDERIQQGA 194
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.3 bits (210), Expect = 5e-20
Identities = 43/209 (20%), Positives = 76/209 (36%), Gaps = 18/209 (8%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
++TG +SGIG +A +LA + L+ + W+ + P ++E ++LD
Sbjct: 6 LITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLD 65
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ SV E + VL+ NAG+ +G + +D + VN + +
Sbjct: 66 VRDSKSVAAARERVTEG--RVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQ 123
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
P + R R++ SV +G Y SK A
Sbjct: 124 AFLPDMKRRGSGRVLVTGSVGGLMGLPF---------------NDVYCASKFALEGLCES 168
Query: 249 LQKRLPAESGINVVCVSPGIVSTNVARDL 277
L L G+++ + G V T +
Sbjct: 169 LAVLL-LPFGVHLSLIECGPVHTAFMEKV 196
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 80.1 bits (196), Expect = 3e-18
Identities = 37/209 (17%), Positives = 70/209 (33%), Gaps = 9/209 (4%)
Query: 67 TCIVTGSTSGIGREIARQL---AESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
+ ++TG G+G + + L + H+ RN + A EL + + L +++
Sbjct: 4 SILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLR 63
Query: 124 AMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAP 183
+ + D +V E G + N + +Q N + P
Sbjct: 64 NFD----AYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVP 119
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQI 243
+L+ P L + + + V + + + G + Y SK A
Sbjct: 120 IMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQGNT-DGGMYAYRTSKSALN 178
Query: 244 KFSSILQKRLPAESGINVVCVSPGIVSTN 272
+ L L I V + PG V T+
Sbjct: 179 AATKSLSVDL-YPQRIMCVSLHPGWVKTD 206
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 78.7 bits (193), Expect = 8e-18
Identities = 26/211 (12%), Positives = 51/211 (24%), Gaps = 33/211 (15%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+V G +G + V E + ++ +
Sbjct: 4 RVLVYGGRGALGSRCVQAFRARNWWVASIDVV-------------ENEEASASVIVKMTD 50
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPAL 185
D V G + ++ AG ++ G K + + + +
Sbjct: 51 SFTEQADQVTAEVGKLLGD-QKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTI 109
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKF 245
S L H + ++GY +K A +
Sbjct: 110 SSHLAT-----------------KHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQL 152
Query: 246 SSILQKRL-PAESGINVVCVSPGIVSTNVAR 275
L + SG + V P + T + R
Sbjct: 153 CQSLAGKNSGMPSGAAAIAVLPVTLDTPMNR 183
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.4 bits (192), Expect = 1e-17
Identities = 38/225 (16%), Positives = 75/225 (33%), Gaps = 25/225 (11%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
++TG SG+G A +L GA V+ +K + E
Sbjct: 7 VAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDV 66
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
++ + + + +++ + Q + + ++ + VN + +
Sbjct: 67 QT---ALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNV 123
Query: 187 SILLFPSLIRGSP------SRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
L+ + + P IIN SV + G V YS SK
Sbjct: 124 IRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVG---------------QAAYSASKG 168
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
+ + + + A GI V+ ++PG+ T + LP+ V
Sbjct: 169 GIVGMTLPIARD-LAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFL 212
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 76.8 bits (188), Expect = 4e-17
Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 43/230 (18%)
Query: 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124
+ + +VTG SG+GR A L G VV+ + + +
Sbjct: 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREGEDLI------------------Y 42
Query: 125 MELDLLSLDSVVR-FSEAWNGRLGPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHL 181
+E D+ + V R + A V G+ +G+ + + ++VN L
Sbjct: 43 VEGDVTREEDVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLL 102
Query: 182 APALLSILLFP------SLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGY 235
+ L G I+N S V+ Y
Sbjct: 103 GTFNVLRLAAWAMRENPPDAEGQRGVIVNTAS---------------VAAFEGQIGQAAY 147
Query: 236 SGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAY 285
+ SK + + + L A GI VV V+PG+ T + + LP+ +A+
Sbjct: 148 AASKGGVVALTLPAAREL-AGWGIRVVTVAPGLFDTPLLQGLPEKAKASL 196
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Score = 75.5 bits (185), Expect = 9e-17
Identities = 39/211 (18%), Positives = 73/211 (34%), Gaps = 37/211 (17%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+V ++ GIGR +A L++ GA V + RN + +
Sbjct: 6 GVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR---------------SGHRYVV 50
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALL 186
DL ++ ++ + +L+ NAG G + + + ++E + L
Sbjct: 51 CDLRKDLDLLF------EKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFL----- 99
Query: 187 SILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFS 246
+ N M G+ + S +L + +++A F
Sbjct: 100 ----------NMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFL 149
Query: 247 SILQKRLPAESGINVVCVSPGIVSTNVARDL 277
L + A GI V CV+PG T ++L
Sbjct: 150 KTLSFEV-APYGITVNCVAPGWTETERVKEL 179
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 74.1 bits (181), Expect = 3e-16
Identities = 24/211 (11%), Positives = 63/211 (29%), Gaps = 33/211 (15%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
IV G +G I ++G V+ + + + + ++ +
Sbjct: 6 IVYGGKGALGSAILEFFKKNGYTVLNIDLS-----------ANDQADSNILVDGNKNWTE 54
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEP-QKFSKDGYEEHMQVNHLAPALLS 187
S++ + + + + AG ++ G K + ++ + + A+ +
Sbjct: 55 --QEQSILEQTASSLQ-GSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAA 111
Query: 188 ILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSS 247
+ + + + S++GY +K A +S
Sbjct: 112 K--LATTHLKPGGLLQLTGA---------------AAAMGPTPSMIGYGMAKAAVHHLTS 154
Query: 248 ILQKRL-PAESGINVVCVSPGIVSTNVARDL 277
L + V+ + P + T + R
Sbjct: 155 SLAAKDSGLPDNSAVLTIMPVTLDTPMNRKW 185
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Score = 70.8 bits (172), Expect = 8e-15
Identities = 29/142 (20%), Positives = 44/142 (30%), Gaps = 17/142 (11%)
Query: 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAV-RNLKAANELIQKWQEEWSGKGL-- 118
PV +VTG+ +GR IA L G V + R+ AN L +
Sbjct: 3 PV----ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITV 58
Query: 119 ----------PLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFS 168
P++ + A G VL+NNA F +
Sbjct: 59 QADLSNVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRND 118
Query: 169 KDGYEEHMQVNHLAPALLSILL 190
+DG+E + + L
Sbjct: 119 EDGHEPCVGDREAMETATADLF 140
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Score = 68.3 bits (166), Expect = 5e-14
Identities = 31/209 (14%), Positives = 63/209 (30%), Gaps = 31/209 (14%)
Query: 67 TCIVTGSTS--GIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124
+V G T+ +G IA +L E+GA V ++ + + E + +
Sbjct: 10 KALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALG-------GALL 62
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEH----MQVNH 180
D+ + + G L L++ + D + ++V+
Sbjct: 63 FRADVTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSA 122
Query: 181 LAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKL 240
+ ++ P L G I+ + + + + +K
Sbjct: 123 YSLVAVARRAEPLLREGGG--IVTLTY---------------YASEKVVPKYNVMAIAKA 165
Query: 241 AQIKFSSILQKRLPAESGINVVCVSPGIV 269
A L L G+ V +S G V
Sbjct: 166 ALEASVRYLAYEL-GPKGVRVNAISAGPV 193
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Score = 61.9 bits (149), Expect = 8e-12
Identities = 27/192 (14%), Positives = 56/192 (29%), Gaps = 44/192 (22%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+++G +GIG + L +G +V + D
Sbjct: 5 VISGCATGIGAATRKVLEAAGHQIVGIDIRD-----------------------AEVIAD 41
Query: 129 LLSLDSVVR-FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLS 187
L + + + ++ + L+ AG+ + + VN+ L
Sbjct: 42 LSTAEGRKQAIADVLAKCSKGMDGLVLCAGLGPQTKV-------LGNVVSVNYFGATELM 94
Query: 188 ILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN-------------VVSGRRKYTSLMG 234
P+L +G + ++SV D + +V + +
Sbjct: 95 DAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGNLA 154
Query: 235 YSGSKLAQIKFS 246
Y+GSK A
Sbjct: 155 YAGSKNALTVAV 166
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Score = 60.3 bits (145), Expect = 3e-11
Identities = 26/212 (12%), Positives = 64/212 (30%), Gaps = 32/212 (15%)
Query: 67 TCIVTGSTS--GIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124
+VTG S I IA+ + GA + +N K + + G +
Sbjct: 7 RILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV--EEFAAQLG-----SDIV 59
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGI-----FSIGEPQKFSKDGYEEHMQVN 179
++ D+ S+ +++ G +++G++ ++
Sbjct: 60 LQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDIS 119
Query: 180 HLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSK 239
+ ++ L G S ++ ++ + R + +K
Sbjct: 120 SYSFVAMAKACRSMLNPG--SALLTLSY---------------LGAERAIPNYNVMGLAK 162
Query: 240 LAQIKFSSILQKRLPAESGINVVCVSPGIVST 271
+ + + G+ V +S G + T
Sbjct: 163 ASLEANVRYMANAM-GPEGVRVNAISAGPIRT 193
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Score = 58.8 bits (140), Expect = 2e-10
Identities = 30/229 (13%), Positives = 69/229 (30%), Gaps = 14/229 (6%)
Query: 64 NDLTCIVTG--STSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLN 121
N+ C + G T+G G IA++L++ ++ + + ++ +
Sbjct: 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDK 60
Query: 122 IEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEE-HMQVNH 180
+ M + + + + N ++I + Y + +M V+
Sbjct: 61 DKKMNILDMLPFDASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHS 120
Query: 181 LAPALLSILLFPSLIRGSPSRIINVN-----------SVMHYVGFVDTEDMNVVSGRRKY 229
LA A + R ++ + + S +
Sbjct: 121 LANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIMKPQSSIISLTYHASQKVVP 180
Query: 230 TSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
G S +K A + +L L I + +S G + + A +
Sbjct: 181 GYGGGMSSAKAALESDTRVLAYHLGRNYNIRINTISAGPLKSRAATAIN 229
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Score = 54.6 bits (130), Expect = 2e-09
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 65 DLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN---LKAANELIQKWQEEW 113
T +VTG T G+G +IAR LA GA H+++ R+ A EL+ + +
Sbjct: 9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALG 61
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Score = 52.0 bits (123), Expect = 2e-08
Identities = 27/214 (12%), Positives = 63/214 (29%), Gaps = 23/214 (10%)
Query: 67 TCIVTG--STSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124
++ G + I IA+ GA + N ++ + ++ +E + +
Sbjct: 7 KGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLN-ESLEKRVRPIAQELN------SPYV 59
Query: 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPA 184
ELD+ + + LG L ++++ + + +
Sbjct: 60 YELDVSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEIS- 118
Query: 185 LLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIK 244
S I N++ + + G KY + G A ++
Sbjct: 119 -------------VYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKAALE 165
Query: 245 FSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278
+ + I V +S G + T + +
Sbjct: 166 SAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIA 199
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Score = 50.1 bits (118), Expect = 7e-08
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 67 TCIVTG--STSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEW 113
+V+G + S I IAR E GA +V+ + + I
Sbjct: 8 RILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAK 56
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 48.5 bits (114), Expect = 2e-07
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEE 112
+ G T +G+ +A +LA G +V+ R + A +++
Sbjct: 5 LLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRI 47
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Score = 49.0 bits (115), Expect = 2e-07
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 67 TCIVTG--STSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124
+ G +G G +A+ LA +GA +++ + ++ + +
Sbjct: 10 RAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSL 69
Query: 125 MEL 127
ME+
Sbjct: 70 MEI 72
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 46.3 bits (109), Expect = 2e-06
Identities = 33/240 (13%), Positives = 71/240 (29%), Gaps = 32/240 (13%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
++TG IG + R + ++ V+ + L A L E S D
Sbjct: 4 LITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNL-----ESLSDISESNRYNFEHAD 58
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN-----HLAP 183
+ + R E + +++ A + S G ++ N L
Sbjct: 59 ICDSAEITRIFEQYQ-----PDAVMHLAAESHVDR----SITGPAAFIETNIVGTYALLE 109
Query: 184 ALLSILLFPSLIRGSPSRIINVNSVMHY--VGFVDTEDMNVVSGRRKYTSLMG----YSG 237
+ + R ++++ Y + D + +V T+ YS
Sbjct: 110 VARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYAPSSPYSA 169
Query: 238 SKLAQIKFSSILQKRLPAESGINVVCVSPGIV---STNVARDLPKIVQAAYHLIPYFIFN 294
SK + ++ G+ + + + +P ++ A P I+
Sbjct: 170 SKASSDHLVRAWRR----TYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPLPIYG 225
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 41.8 bits (97), Expect = 3e-05
Identities = 18/149 (12%), Positives = 35/149 (23%), Gaps = 19/149 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
+V T +G A LA GA VV+ R L A + +
Sbjct: 25 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAE----- 79
Query: 127 LDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPA-L 185
+ + H + I + + ++ + +A
Sbjct: 80 ---------TADDASRAEAVKGAHFVFTAGAIG----LELLPQAAWQNESSIEIVADYNA 126
Query: 186 LSILLFPSLIRGSPSRIINVNSVMHYVGF 214
L + + +G
Sbjct: 127 QPPLGIGGIDATDKGKEYGGKRAFGALGI 155
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 41.6 bits (96), Expect = 7e-05
Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME 126
T V G+T G + R A G HV V +LK + N+ +
Sbjct: 5 TIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQA---------IPNVTLFQ 55
Query: 127 LDLLSLDSVVR 137
LL+ ++
Sbjct: 56 GPLLNNVPLMD 66
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 41.0 bits (94), Expect = 1e-04
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIE 123
VTG+ + + QL E G V R+ L ++W ++ G+ +E
Sbjct: 16 VTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVE 69
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 40.1 bits (92), Expect = 2e-04
Identities = 9/49 (18%), Positives = 15/49 (30%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGL 118
+ G T IG+ I G + R +N + + G
Sbjct: 8 IVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGA 56
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 42/226 (18%), Positives = 80/226 (35%), Gaps = 26/226 (11%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG + IG QL ++G V+ + NL + + E GK + +E D
Sbjct: 4 LVTGGSGYIGSHTCVQLLQNGHDVI-ILDNLCNSKRSVLPVIERLGGK----HPTFVEGD 58
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
+ + + + +I+ AG+ ++GE S E+ N ++
Sbjct: 59 IRNEALMTEILHDHA-----IDTVIHFAGLKAVGE----SVQKPLEYYDNNVNG----TL 105
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
L ++ + I +S Y + T Y SKL + I
Sbjct: 106 RLISAMRAANVKNFIFSSSATVYGDQPKIPYVES---FPTGTPQSPYGKSKLMVEQ---I 159
Query: 249 LQKRLPAESGINVVCVSPG-IVSTNVARDLPKIVQAAY-HLIPYFI 292
L A+ ++ + V + + D+ + Q +L+PY
Sbjct: 160 LTDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIA 205
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 3e-04
Identities = 8/45 (17%), Positives = 15/45 (33%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEW 113
+ G+T G Q ++G V + VR+ +
Sbjct: 7 AIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVV 51
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.5 bits (88), Expect = 7e-04
Identities = 35/226 (15%), Positives = 72/226 (31%), Gaps = 18/226 (7%)
Query: 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELD 128
+VTG IG +L E+G V NL + E + +I E+D
Sbjct: 5 LVTGGAGYIGSHTVVELIENGYDCV-VADNLSNSTYDSVARLEVLTKH----HIPFYEVD 59
Query: 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSI 188
L + + + + + +I+ AG+ ++GE + Y ++
Sbjct: 60 LCDRKGLEKVFKEYK-----IDSVIHFAGLKAVGESTQIPLRYYHNNILGTV-------- 106
Query: 189 LLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSI 248
+L + + + S+ + +S Y +M + Y +K A +
Sbjct: 107 VLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENILND 166
Query: 249 LQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIFN 294
L ++ I + + +L+PY
Sbjct: 167 LYNSDKKSWKFAILRYFNPIGAHPSGLIGEDPLGIPNNLLPYMAQV 212
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 37.1 bits (84), Expect = 0.001
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 67 TCIVTGSTSGIGREIARQLAESGAH--VVMAVRNLKAANELIQKWQ 110
T +VTG++ G+ + ++L E VR+ + ++ +
Sbjct: 5 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEAD 50
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 36.3 bits (82), Expect = 0.003
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 70 VTGSTSGIGREIARQLAESGAHVVMAVR-NLKAANELIQKWQEEWSGKGL 118
+ G+T IGR +A+ + G + VR + ++N + E + G
Sbjct: 8 LIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGA 57
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 298 | |||
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 100.0 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 100.0 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 100.0 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 100.0 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 100.0 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 100.0 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 100.0 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 100.0 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 100.0 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 100.0 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 100.0 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 100.0 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 100.0 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 100.0 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 100.0 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 100.0 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 100.0 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 100.0 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 100.0 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 100.0 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 100.0 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 100.0 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 100.0 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 100.0 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 100.0 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 100.0 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 100.0 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 100.0 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 100.0 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 100.0 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 100.0 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 100.0 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 100.0 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 100.0 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 100.0 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 100.0 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 100.0 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 100.0 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 100.0 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 100.0 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 100.0 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 100.0 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 100.0 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 100.0 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 100.0 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 100.0 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 100.0 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 100.0 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 100.0 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 100.0 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 100.0 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 100.0 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 100.0 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 100.0 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 100.0 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 100.0 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 100.0 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 100.0 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 100.0 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 100.0 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 100.0 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 100.0 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.97 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.96 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.84 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.79 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.73 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.69 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.68 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.67 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.66 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.65 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.65 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.62 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.6 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.59 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.58 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.55 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.55 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.53 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.52 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.52 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.52 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.51 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.5 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.46 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.37 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.36 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 99.22 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.18 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.11 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.02 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.01 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 98.88 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 98.88 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 98.88 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 98.35 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 98.11 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 98.08 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 98.07 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 98.03 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 98.02 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.98 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.95 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.93 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.91 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.79 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.79 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 97.73 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.7 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.69 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.65 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.61 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.6 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.59 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.56 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.56 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 97.55 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 97.54 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 97.52 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.46 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.38 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.36 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 97.35 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.31 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.28 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 97.26 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.26 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 97.24 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.17 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.15 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 97.12 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 97.1 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 97.1 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.09 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.09 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.03 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.98 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 96.97 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.97 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.96 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.95 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.95 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 96.92 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.89 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.8 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.77 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.73 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 96.71 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.7 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.65 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.62 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 96.6 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.58 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 96.56 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.44 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 96.44 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 96.39 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 96.35 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.26 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 96.13 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 96.13 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.1 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.03 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.93 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.92 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 95.87 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 95.85 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 95.76 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 95.74 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 95.53 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 95.5 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 95.32 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.26 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.23 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 95.1 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.05 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 95.01 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 94.93 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 94.92 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 94.79 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 94.76 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 94.72 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.43 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 94.43 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 94.29 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 94.24 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 94.14 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.03 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 94.03 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.01 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 93.96 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 93.88 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 93.85 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 93.83 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 93.75 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 93.74 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 93.73 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 93.7 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 93.53 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 93.27 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 92.93 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 92.93 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 92.86 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 92.81 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 92.8 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 92.72 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 92.62 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 92.59 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 92.57 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 92.24 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 92.11 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 92.05 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 91.97 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 91.91 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 91.86 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 91.86 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 91.83 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 91.81 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 91.81 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 91.8 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 91.69 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 91.51 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 91.46 | |
| d2csua3 | 163 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 91.45 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 91.26 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 91.23 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 90.86 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 90.6 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 90.49 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 90.28 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 89.82 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 89.74 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 89.64 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 89.59 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 89.4 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 89.18 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 89.15 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 89.12 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 89.04 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 89.0 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 88.95 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 88.93 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 88.76 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 88.66 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 88.57 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 88.55 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 88.37 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 88.14 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 88.07 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 87.95 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 87.77 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 87.51 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 87.39 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 87.18 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 87.11 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 87.08 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 87.03 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 86.99 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 86.93 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 86.68 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 86.67 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 86.63 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 86.55 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 86.28 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 86.18 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 86.01 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 85.53 | |
| d2fr1a2 | 209 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 85.33 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 85.23 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 85.18 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 85.13 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 85.07 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 84.9 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 84.85 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 84.79 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 84.73 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 84.67 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 84.62 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 84.61 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 84.59 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 84.33 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 84.24 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 84.23 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 83.47 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 83.43 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 83.29 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 83.07 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 83.05 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 83.01 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 82.76 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 82.66 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 82.03 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 81.68 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 81.6 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 81.56 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 81.14 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 80.96 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 80.68 |
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.7e-50 Score=349.08 Aligned_cols=216 Identities=27% Similarity=0.395 Sum_probs=198.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+... .++.++++|++|++++++++++
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g-----~~~~~~~~Dv~~~~~v~~~~~~ 76 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG-----VETMAFRCDVSNYEEVKKLLEA 76 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC-----CCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC-----CcEEEEEccCCCHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999877543 4788999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|+||+||||||+...+++.+++.++|++.+++|+.++|+++|.++|+|++++.|+|||++|..+...
T Consensus 77 ~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~-------- 148 (251)
T d1vl8a_ 77 VKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEV-------- 148 (251)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCC--------
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccc--------
Confidence 999999999999999999889999999999999999999999999999999999999999999999764321
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-CCCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~pe~ 297 (298)
+.+...+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+.. ++..+.+.+.+|++|+ +|||
T Consensus 149 ------~~~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~ped 221 (251)
T d1vl8a_ 149 ------TMPNISAYAASKGGVASLTKALAKEW-GRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKRIPLGRTGVPED 221 (251)
T ss_dssp ------CSSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHTCTTSSCBCGGG
T ss_pred ------cCccccchHHHHHhHHHHHHHHHHHh-cccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhcCCCCCCCCHHH
Confidence 23677889999999999999999999 88999999999999999998754 4556677789999999 9987
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.4e-51 Score=351.86 Aligned_cols=211 Identities=26% Similarity=0.377 Sum_probs=195.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|+.|+++|++|++++|++++++++.+++.. +...+++|++|++++++++++
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~---------~~~~~~~Dv~~~~~v~~~~~~ 71 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGA---------NGKGLMLNVTDPASIESVLEK 71 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGG---------GEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCC---------CCcEEEEEecCHHHhhhhhhh
Confidence 57899999999999999999999999999999999999999998887643 678899999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|+||+||||||....+++.+.+.++|++.+++|+.++++++|+++|+|++++.|+|||+||.++..+.
T Consensus 72 ~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~------- 144 (243)
T d1q7ba_ 72 IRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGN------- 144 (243)
T ss_dssp HHHHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCC-------
T ss_pred hhcccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876665
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH-HHHHHHHhhhhccc-CCCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK-IVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~-~~~~~~~~~p~~~~-~pe~ 297 (298)
++..+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+...+ ..+...+.+|++|+ +|||
T Consensus 145 --------~~~~~Y~asKaal~~lt~~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R~~~ped 213 (243)
T d1q7ba_ 145 --------GGQANYAAAKAGLIGFSKSLAREV-ASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQE 213 (243)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTTCTTSSCBCHHH
T ss_pred --------CCCHHHHHHHHHHHHHHHHHHHHh-CccCeEEEEEecceEechhhhhhhhhHHHHHHhcCCCCCCCCHHH
Confidence 888899999999999999999999 8899999999999999999987644 44556668999998 8875
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=1e-50 Score=350.67 Aligned_cols=217 Identities=25% Similarity=0.343 Sum_probs=196.1
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
...+++||+||||||++|||+++|++|+++|++|++++|++++++++.+++++. +.++.++++|++|+++++++
T Consensus 4 ~~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~------g~~~~~~~~Dvt~~~~v~~~ 77 (251)
T d2c07a1 4 YYYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSF------GYESSGYAGDVSKKEEISEV 77 (251)
T ss_dssp CCCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTT------TCCEEEEECCTTCHHHHHHH
T ss_pred cccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHH
Confidence 456789999999999999999999999999999999999999999999998653 24789999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++++.+++|+||+||||||+....++.+.+.++|++++++|+.++++++|+++|+|++++.|+|||+||.+++.+.
T Consensus 78 ~~~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~---- 153 (251)
T d2c07a1 78 INKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGN---- 153 (251)
T ss_dssp HHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC----
T ss_pred HHHHHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCC----
Confidence 9999999999999999999998889999999999999999999999999999999999999999999999877665
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH-HHHHHHHhhhhccc-CCC
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK-IVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~-~~~~~~~~~p~~~~-~pe 296 (298)
+...+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+..++ ..+.+...+|++|+ +||
T Consensus 154 -----------~~~~~Y~asKaal~~ltr~lA~el-~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~~~pe 221 (251)
T d2c07a1 154 -----------VGQANYSSSKAGVIGFTKSLAKEL-ASRNITVNAIAPGFISSDMTDKISEQIKKNIISNIPAGRMGTPE 221 (251)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCC-----CCHHHHHHHHTTCTTSSCBCHH
T ss_pred -----------CCCHHHHHHHHHHHHHHHHHHHHh-hhhCeEEEEEccCCEecccccccCHHHHHHHHhcCCCCCCcCHH
Confidence 788899999999999999999999 8899999999999999999988654 44556668999999 887
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 222 d 222 (251)
T d2c07a1 222 E 222 (251)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=100.00 E-value=1.6e-50 Score=350.59 Aligned_cols=216 Identities=19% Similarity=0.251 Sum_probs=195.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+...+ .++.+++||++|++++++++++
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~----~~~~~~~~Dvt~~~~v~~~~~~ 76 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPD----AEVLTTVADVSDEAQVEAYVTA 76 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTT----CCEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCC----CeEEEEeccCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999998776432 4799999999999999999999
Q ss_pred HhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+++|+||+||||||+.. .+++.+++.++|++++++|+.|+|+++|+++|+|+++++|+|||+||.+++.+.
T Consensus 77 ~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~------ 150 (258)
T d1iy8a_ 77 TTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGI------ 150 (258)
T ss_dssp HHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBC------
T ss_pred HHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCC------
Confidence 9999999999999999864 567889999999999999999999999999999999999999999999876665
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---------hHHHHHHHHhhhhc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---------PKIVQAAYHLIPYF 291 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---------~~~~~~~~~~~p~~ 291 (298)
+...+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+.. .+..+.+...+|++
T Consensus 151 ---------~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~i~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~pl~ 220 (258)
T d1iy8a_ 151 ---------GNQSGYAAAKHGVVGLTRNSAVEY-GRYGIRINAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNPSK 220 (258)
T ss_dssp ---------SSBHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSHHHHHHHHHHCTTCHHHHHHHHHTTCTTC
T ss_pred ---------CCchHHHHHHHHHHHHHHHHHHHh-CccCceEEEEeeCcccCHHHHHHHhhcCcccHHHHHHHHHhcCCCC
Confidence 888999999999999999999999 88999999999999999997543 23344566688999
Q ss_pred cc-CCCC
Q 022369 292 IF-NPQE 297 (298)
Q Consensus 292 ~~-~pe~ 297 (298)
|+ +|||
T Consensus 221 R~~~p~d 227 (258)
T d1iy8a_ 221 RYGEAPE 227 (258)
T ss_dssp SCBCHHH
T ss_pred CCcCHHH
Confidence 98 8875
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=5.3e-50 Score=347.55 Aligned_cols=217 Identities=25% Similarity=0.309 Sum_probs=169.4
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
++.+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++.+.. .++.++.||++++++++++
T Consensus 2 ~~F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~------~~~~~~~~Dv~~~~~v~~~ 75 (259)
T d1xq1a_ 2 QRWSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG------FQVTGSVCDASLRPEREKL 75 (259)
T ss_dssp CTTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHH
T ss_pred CccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEeccCCCHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999987632 3799999999999999999
Q ss_pred HHHHhccc-CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCc
Q 022369 139 SEAWNGRL-GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 139 ~~~~~~~~-g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~ 217 (298)
++++.+++ |+||+||||||+....++.+++.++|++++++|+.|+|+++|+++|+|++++.|+|||+||..+..+.
T Consensus 76 ~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~--- 152 (259)
T d1xq1a_ 76 MQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSA--- 152 (259)
T ss_dssp HHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-----------
T ss_pred HHHHHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccccc---
Confidence 99999998 78999999999998899999999999999999999999999999999999999999999999876665
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch--HHHHHHHHhhhhccc-C
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP--KIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~--~~~~~~~~~~p~~~~-~ 294 (298)
+....|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+... +..+.....+|++|+ +
T Consensus 153 ------------~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~pl~R~~~ 219 (259)
T d1xq1a_ 153 ------------SVGSIYSATKGALNQLARNLACEW-ASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGE 219 (259)
T ss_dssp --------------CCHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEECCSCC-------------------------CC
T ss_pred ------------cccccccccccchhhhhHHHHHHh-cccCeEEEEeccCcccCHHhhhhchHHHHHHHHhCCCCCCCcC
Confidence 778889999999999999999999 889999999999999999988652 334555668999999 9
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 220 ped 222 (259)
T d1xq1a_ 220 PEE 222 (259)
T ss_dssp GGG
T ss_pred HHH
Confidence 986
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.9e-50 Score=347.61 Aligned_cols=214 Identities=25% Similarity=0.326 Sum_probs=197.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++++. +.++.++++|++|+++++++++
T Consensus 7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~------g~~~~~~~~Dvs~~~~~~~~~~ 80 (255)
T d1fmca_ 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL------GGQAFACRCDITSEQELSALAD 80 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHc------CCcEEEEEccCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999864 2478999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+++|+||+||||||+....++ +++.++|++.+++|+.|+++++|.++|+|+++++|+|||+||.++..+.
T Consensus 81 ~~~~~~g~iDilvnnAG~~~~~~~-e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~------ 153 (255)
T d1fmca_ 81 FAISKLGKVDILVNNAGGGGPKPF-DMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKN------ 153 (255)
T ss_dssp HHHHHHSSCCEEEECCCCCCCCCT-TCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCC------
T ss_pred HHHHHcCCCCEeeeCCcCCCCCcc-cCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhccc------
Confidence 999999999999999999877665 7899999999999999999999999999999999999999999866665
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc--hHHHHHHHHhhhhccc-CCCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--PKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~--~~~~~~~~~~~p~~~~-~pe~ 297 (298)
++..+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|++.+.. ++..+.+.+.+|++|+ +|||
T Consensus 154 ---------~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~e~~~~~~~~~pl~R~g~ped 223 (255)
T d1fmca_ 154 ---------INMTSYASSKAAASHLVRNMAFDL-GEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRLGQPQD 223 (255)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCSHHHHTTCCHHHHHHHHHTCSSCSCBCHHH
T ss_pred ---------cccccchhHHHHHHHHHHHHHHHh-CccCeEEEEeeeCcCcChHhhccCCHHHHHHHHhcCCCCCCcCHHH
Confidence 888999999999999999999999 88999999999999999998654 4556677779999999 8875
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=100.00 E-value=4e-50 Score=348.28 Aligned_cols=212 Identities=26% Similarity=0.394 Sum_probs=193.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+||++|||||++|||+++|++|+++|++|++++|++++++++.+++++. +.++.++++|++|+++++++++++.
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~------g~~~~~~~~Dvs~~~~v~~~~~~~~ 74 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREA------GVEADGRTCDVRSVPEIEALVAAVV 74 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeecCCHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999998763 2479999999999999999999999
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhh--hhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPS--LIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~--m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+++|+||+||||||+...+++.+++.++|++++++|+.|+++++|+++|+ |++++.|+|||++|..+..+.
T Consensus 75 ~~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~------- 147 (257)
T d2rhca1 75 ERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGV------- 147 (257)
T ss_dssp HHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCC-------
T ss_pred HHhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCccccccccccccccc-------
Confidence 99999999999999998899999999999999999999999999999997 566778999999999876665
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------------hHHHHHHHHhhh
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------------PKIVQAAYHLIP 289 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------------~~~~~~~~~~~p 289 (298)
+...+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+.+ ++..+.+...+|
T Consensus 148 --------~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~e~~~~~~~~~P 218 (257)
T d2rhca1 148 --------VHAAPYSASKHGVVGFTKALGLEL-ARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVP 218 (257)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHT-TTSEEEEEEEEECSBCSHHHHHHHHHHHHHTTCCHHHHHHHHHTTST
T ss_pred --------ccchhHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEeeCCCCCHHHHHHHhhhhhhcccChHHHHHHHHhcCC
Confidence 888999999999999999999999 88999999999999999997654 234455667899
Q ss_pred hccc-CCCC
Q 022369 290 YFIF-NPQE 297 (298)
Q Consensus 290 ~~~~-~pe~ 297 (298)
++|+ +|||
T Consensus 219 lgR~~~ped 227 (257)
T d2rhca1 219 IGRYVQPSE 227 (257)
T ss_dssp TSSCBCHHH
T ss_pred CCCCcCHHH
Confidence 9999 8875
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=100.00 E-value=7e-50 Score=346.89 Aligned_cols=216 Identities=25% Similarity=0.341 Sum_probs=196.7
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+.+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++.+. +.++.++++|++|++++++++
T Consensus 3 ~f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~------g~~~~~~~~Dv~~~~~v~~~~ 76 (259)
T d2ae2a_ 3 RWNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSK------GFKVEASVCDLSSRSERQELM 76 (259)
T ss_dssp TTCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHH
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCCceEEEeeCCCHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999998764 247889999999999999999
Q ss_pred HHHhcccC-CccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLG-PLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g-~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
+++.++++ ++|+||||||+....++.+.+.|+|++++++|+.++|+++|+++|+|+++++|+|||+||..+..+.
T Consensus 77 ~~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~---- 152 (259)
T d2ae2a_ 77 NTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAV---- 152 (259)
T ss_dssp HHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCC----
T ss_pred HHHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccccccccccccccccc----
Confidence 99999887 7999999999998889999999999999999999999999999999999999999999999876655
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------hHHHHHHHHhhhhcc
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------PKIVQAAYHLIPYFI 292 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------~~~~~~~~~~~p~~~ 292 (298)
+....|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+.. .+..+.+...+|++|
T Consensus 153 -----------~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~pl~R 220 (259)
T d2ae2a_ 153 -----------PYEAVYGATKGAMDQLTRCLAFEW-AKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRR 220 (259)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCSHHHHHHTTSHHHHHHHHHHHHTSTTCS
T ss_pred -----------ccccchHHHHHHHHHHHHHHHHHh-CcCceEEEEeeeCcccCHHHHhhhhchhhHHHHHHHHhcCCCCC
Confidence 888999999999999999999999 88999999999999999997543 123345566889999
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 221 ~g~ped 226 (259)
T d2ae2a_ 221 MGEPKE 226 (259)
T ss_dssp CBCHHH
T ss_pred CcCHHH
Confidence 8 8875
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=100.00 E-value=8.9e-50 Score=346.66 Aligned_cols=214 Identities=23% Similarity=0.308 Sum_probs=187.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC-chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN-LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++||++|||||++|||+++|++|+++|++|++++|+ .+.++++.+++.+... .++.++++|++|++++++++++
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g-----~~~~~~~~Dv~~~~~v~~~~~~ 76 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG-----VKVLYDGADLSKGEAVRGLVDN 76 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHT-----SCEEEECCCTTSHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcC-----CcEEEEECCCCCHHHHHHHHHH
Confidence 689999999999999999999999999999999997 4678888888776543 4789999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|+||+||||||+...+++.+.+.++|++.|++|+.++++++|+++|+|++++.|+|||+||.++..+.
T Consensus 77 ~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~------- 149 (260)
T d1x1ta1 77 AVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVAS------- 149 (260)
T ss_dssp HHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceecc-------
Confidence 9999999999999999998899999999999999999999999999999999999999999999999877665
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH-------------HHHHHHHhh
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK-------------IVQAAYHLI 288 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~-------------~~~~~~~~~ 288 (298)
+...+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+...+ ..+.+...+
T Consensus 150 --------~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (260)
T d1x1ta1 150 --------ANKSAYVAAKHGVVGFTKVTALET-AGQGITANAICPGWVRTPLVEKQISALAEKNGVDQETAARELLSEKQ 220 (260)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCC------------------------CHHHHC
T ss_pred --------CCcchhhhhhhhHHHhHHHHHHHh-chhCcEEEEEecCCCCChhhhhhhhhhhhhcCCChHHHHHHHHHhcC
Confidence 888899999999999999999999 8899999999999999999865421 112245688
Q ss_pred hhccc-CCCC
Q 022369 289 PYFIF-NPQE 297 (298)
Q Consensus 289 p~~~~-~pe~ 297 (298)
|++|+ +|||
T Consensus 221 Pl~R~g~ped 230 (260)
T d1x1ta1 221 PSLQFVTPEQ 230 (260)
T ss_dssp TTCCCBCHHH
T ss_pred CCCCCcCHHH
Confidence 99998 8875
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=4.2e-50 Score=344.90 Aligned_cols=207 Identities=23% Similarity=0.319 Sum_probs=190.6
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.++||++|||||++|||+++|++|+++|++|++++|++++++++.+++.. ++.++++|++|++++++++++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~Dv~~~~~v~~~~~~ 73 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELAD---------AARYVHLDVTQPAQWKAAVDT 73 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGG---------GEEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhC---------cceEEEeecCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999888877632 688999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+...+++.+++.++|++.+++|+.|+|+++|.++|+|+++++|+|||+||.+++.+.
T Consensus 74 ~~~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~------- 146 (244)
T d1nffa_ 74 AVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGT------- 146 (244)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHHHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccccc-------
Confidence 9999999999999999998899999999999999999999999999999999999999999999999876665
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHHHHhhhhccc-CCCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~~~~~p~~~~-~pe~ 297 (298)
+...+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+..++. ....|++|+ +|||
T Consensus 147 --------~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~----~~~~pl~R~~~p~d 210 (244)
T d1nffa_ 147 --------VACHGYTATKFAVRGLTKSTALEL-GPSGIRVNSIHPGLVKTPMTDWVPED----IFQTALGRAAEPVE 210 (244)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSGGGTTSCTT----CSCCSSSSCBCHHH
T ss_pred --------ccccchhhHHHHHHHHHHHHHHHh-cccCEEEEEEeeCCccChhHhhhhHH----HHhccccCCCCHHH
Confidence 788999999999999999999999 88999999999999999998876543 235788777 7765
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=100.00 E-value=2.3e-49 Score=343.91 Aligned_cols=215 Identities=22% Similarity=0.295 Sum_probs=195.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++||++|||||++|||+++|++|+++|++|++++|++++++++.+++++. +.++.++.||++|+++++++++
T Consensus 1 krL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~------g~~~~~~~~Dv~~~~~v~~~~~ 74 (260)
T d1zema1 1 KKFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREK------GVEARSYVCDVTSEEAVIGTVD 74 (260)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT------TSCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHHH
Confidence 3588999999999999999999999999999999999999999999888653 2478999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+++|+||+||||||+.. ..++.+++.++|++.+++|+.++++++|+++|+|++++.|+|||+||.+++.+.
T Consensus 75 ~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~----- 149 (260)
T d1zema1 75 SVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGP----- 149 (260)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCC-----
T ss_pred HHHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCC-----
Confidence 99999999999999999874 467999999999999999999999999999999999999999999999876665
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-----------------hHHHH
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-----------------PKIVQ 282 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-----------------~~~~~ 282 (298)
+...+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|..+. .+..+
T Consensus 150 ----------~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (260)
T d1zema1 150 ----------PNMAAYGTSKGAIIALTETAALDL-APYNIRVNAISPGYMGPGFMWERQVELQAKVGSQYFSTDPKVVAQ 218 (260)
T ss_dssp ----------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCSSHHHHHHHHHHHHHTCTTSCSSHHHHHH
T ss_pred ----------cchHHHHHHHHHHHHHHHHHHHHh-hhhCCEEEEeccCcccCcchhhcchhhhhhhcccccccCHHHHHH
Confidence 888899999999999999999999 88999999999999999985321 22345
Q ss_pred HHHHhhhhccc-CCCC
Q 022369 283 AAYHLIPYFIF-NPQE 297 (298)
Q Consensus 283 ~~~~~~p~~~~-~pe~ 297 (298)
.+...+|++|+ +|||
T Consensus 219 ~~~~~~Pl~R~g~ped 234 (260)
T d1zema1 219 QMIGSVPMRRYGDINE 234 (260)
T ss_dssp HHHHTSTTSSCBCGGG
T ss_pred HHHhcCCCCCCcCHHH
Confidence 56678999999 8886
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=100.00 E-value=2.8e-49 Score=343.23 Aligned_cols=215 Identities=22% Similarity=0.325 Sum_probs=193.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch-HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK-AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
++++||++|||||++|||+++|++|+++|++|++++|+.+ .++++.+++++. +.++.++++|++|++++++++
T Consensus 3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~------g~~~~~~~~Dvt~~~~v~~~~ 76 (261)
T d1geea_ 3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKV------GGEAIAVKGDVTVESDVINLV 76 (261)
T ss_dssp GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCEEEEEECCTTSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhc------CCcEEEEEccCCCHHHHHHHH
Confidence 3689999999999999999999999999999999999864 677888887663 247899999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCC-eEEEEcCCccccCCCCcc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPS-RIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g-~Iv~isS~~~~~~~~~~~ 218 (298)
+++.+++|+||+||||||+....++.+++.++|++.+++|+.|+++++|+++|+|++++.| +|||+||.++..+.
T Consensus 77 ~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~---- 152 (261)
T d1geea_ 77 QSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPW---- 152 (261)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCC----
T ss_pred HHHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccC----
Confidence 9999999999999999999988899999999999999999999999999999999887755 59999999866655
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-C
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~ 294 (298)
+...+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.... ++..+.+.+.+|++|+ +
T Consensus 153 -----------~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~R~~~ 220 (261)
T d1geea_ 153 -----------PLFVHYAASKGGMKLMTETLALEY-APKGIRVNNIGPGAINTPINAEKFADPEQRADVESMIPMGYIGE 220 (261)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCSGGGHHHHHSHHHHHHHHTTCTTSSCBC
T ss_pred -----------ccccccccCCccchhhHHHHHHHh-hhhCcEEEEEeeCcCcCHhHhhhcCCHHHHHHHHhcCCCCCCCC
Confidence 888999999999999999999999 88999999999999999998653 3445566678999999 8
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 221 ped 223 (261)
T d1geea_ 221 PEE 223 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=5.3e-49 Score=337.95 Aligned_cols=208 Identities=23% Similarity=0.280 Sum_probs=189.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++ ...+++||++|++++++++++
T Consensus 2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~ 70 (242)
T d1ulsa_ 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-----------GAHPVVMDVADPASVERGFAE 70 (242)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-----------TCEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-----------CCeEEEEecCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999999888876543 467889999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|+||+||||||+...+++.+++.++|++.+++|+.|+++++|+++|+|++++.++|+++||. +..+.
T Consensus 71 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~-~~~~~------- 142 (242)
T d1ulsa_ 71 ALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASR-VYLGN------- 142 (242)
T ss_dssp HHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCG-GGGCC-------
T ss_pred HHHhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccc-cccCC-------
Confidence 9999999999999999998899999999999999999999999999999999999988888888874 33333
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHHhhhhccc-CCCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~p~~~~-~pe~ 297 (298)
++..+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+..++. .+.....+|++|+ +|||
T Consensus 143 --------~~~~~Y~asKaal~~ltk~lA~el-a~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~~~ped 211 (242)
T d1ulsa_ 143 --------LGQANYAASMAGVVGLTRTLALEL-GRWGIRVNTLAPGFIETRMTAKVPEKVREKAIAATPLGRAGKPLE 211 (242)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTTSSSCHHHHHHHHHTCTTCSCBCHHH
T ss_pred --------CCCcchHHHHHHHHHHHHHHHHHH-hhhCcEEEEEeeCcccChhhhcCCHHHHHHHHhcCCCCCCCCHHH
Confidence 778899999999999999999999 88999999999999999999987654 4556679999999 8875
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=100.00 E-value=4.3e-49 Score=340.39 Aligned_cols=214 Identities=25% Similarity=0.307 Sum_probs=192.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.. +.++.++++|++|++++++++++
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dv~~~~~v~~~~~~ 75 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-------PDQIQFFQHDSSDEDGWTKLFDA 75 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-------TTTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-------CCcEEEEEccCCCHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999988877632 24789999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCC-eEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPS-RIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g-~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+++|+||+||||||+...+++.+++.++|++.+++|+.++|+++|+++|+|++++.| +|||+||.+++.+.
T Consensus 76 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~------ 149 (251)
T d1zk4a1 76 TEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGD------ 149 (251)
T ss_dssp HHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCC------
T ss_pred HHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccC------
Confidence 99999999999999999999999999999999999999999999999999999998765 89999999876665
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcC-CCCCcEEEEeeCCccccCccCCchH--HHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLP-AESGINVVCVSPGIVSTNVARDLPK--IVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~-~~~gI~v~~v~Pg~v~T~~~~~~~~--~~~~~~~~~p~~~~-~pe 296 (298)
|....|++||+|+.+|+++|+.|+. .++|||||+|+||+|+|+|.+..+. ........+|++|+ +||
T Consensus 150 ---------~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~pl~R~~~pe 220 (251)
T d1zk4a1 150 ---------PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDLPGAEEAMSQRTKTPMGHIGEPN 220 (251)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTSTTHHHHHTSTTTCTTSSCBCHH
T ss_pred ---------CCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHhcCCHHHHHHHHhCCCCCCCcCHH
Confidence 8888999999999999999999841 6889999999999999999887643 33334457899998 887
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 221 d 221 (251)
T d1zk4a1 221 D 221 (251)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=2.5e-49 Score=340.37 Aligned_cols=210 Identities=25% Similarity=0.332 Sum_probs=192.3
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEE-cCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAV-RNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
++||||||++|||+++|++|+++|++|++.+ |+++.++++.+++++. +.++.++++|++|+++++++++++.+
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~------g~~~~~~~~Dv~~~~~v~~~~~~~~~ 75 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAY------GGQAITFGGDVSKEADVEAMMKTAID 75 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHH------TCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHc------CCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999999999875 5777888888888764 24789999999999999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
++|+||+||||||+....++.+++.++|++.+++|+.|+|+++|+++|+|+++++|+|||+||.+++.+.
T Consensus 76 ~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~---------- 145 (244)
T d1edoa_ 76 AWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGN---------- 145 (244)
T ss_dssp HSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCC----------
T ss_pred HcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCC----------
Confidence 9999999999999999899999999999999999999999999999999999999999999999877665
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHH-HHHHHhhhhccc-CCCC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIV-QAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~-~~~~~~~p~~~~-~pe~ 297 (298)
++...|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+.+++.. +.....+|++|+ +|||
T Consensus 146 -----~~~~~Y~asKaal~~ltk~lA~el-~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R~~~p~d 214 (244)
T d1edoa_ 146 -----IGQANYAAAKAGVIGFSKTAAREG-ASRNINVNVVCPGFIASDMTAKLGEDMEKKILGTIPLGRTGQPEN 214 (244)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHH-HTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTSCTTCSCBCHHH
T ss_pred -----CCCHHHHHHHHHHHHChHHHHHHH-hhhCcEEEEEecceeccHHHHHhhHHHHHHHHhcCCCCCCcCHHH
Confidence 788899999999999999999999 889999999999999999998876544 455568999998 8875
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=3.2e-49 Score=340.41 Aligned_cols=208 Identities=27% Similarity=0.318 Sum_probs=185.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.++||++|||||++|||+++|++|+++|++|++++|+++..+ ..+++ ...++++|++|++++++++++
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~-~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~ 69 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKE-VAEAI-----------GGAFFQVDLEDERERVRFVEE 69 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHH-HHHHH-----------TCEEEECCTTCHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHc-----------CCeEEEEeCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999987644 33332 345789999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|+||+||||||+...+++.+++.|+|++.+++|+.|+|+++|+++|+|++++.|+|||+||.++..+.
T Consensus 70 ~~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~------- 142 (248)
T d2d1ya1 70 AAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAE------- 142 (248)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBC-------
T ss_pred HHHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccccc-------
Confidence 9999999999999999998899999999999999999999999999999999999999999999999876665
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------h-HHHHHHHHhhhhccc-
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------P-KIVQAAYHLIPYFIF- 293 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------~-~~~~~~~~~~p~~~~- 293 (298)
+...+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+.. + +..+.+...+|++|+
T Consensus 143 --------~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~ 213 (248)
T d2d1ya1 143 --------QENAAYNASKGGLVNLTRSLALDL-APLRIRVNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHALRRLG 213 (248)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHHC--------CHHHHTTSTTSSCB
T ss_pred --------cccchhHHHHHHHHHHHHHHHHHh-hhhCcEEEEEeeCCCCCchHHHHhhcCCCHHHHHHHHHhcCCCCCCc
Confidence 888999999999999999999999 88999999999999999987542 1 223445568899988
Q ss_pred CCCC
Q 022369 294 NPQE 297 (298)
Q Consensus 294 ~pe~ 297 (298)
+|||
T Consensus 214 ~ped 217 (248)
T d2d1ya1 214 KPEE 217 (248)
T ss_dssp CHHH
T ss_pred CHHH
Confidence 8875
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=100.00 E-value=3.9e-49 Score=341.67 Aligned_cols=211 Identities=24% Similarity=0.357 Sum_probs=191.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++++|++|++++++++++
T Consensus 2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~---------~~~~~~~~Dvt~~~~v~~~~~~ 72 (256)
T d1k2wa_ 2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIG---------PAACAIALDVTDQASIDRCVAE 72 (256)
T ss_dssp TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHC---------TTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---------CceEEEEeeCCCHHHHHHHHHH
Confidence 4789999999999999999999999999999999999999998887762 3788999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+++|+||+||||||+...+++.+++.++|++.+++|+.|+++++|+++|.|.++ +.|+|||+||.++..+.
T Consensus 73 ~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~------ 146 (256)
T d1k2wa_ 73 LLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGE------ 146 (256)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC------
T ss_pred HHHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhcccc------
Confidence 99999999999999999988899999999999999999999999999999987664 57999999999866665
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch------------HHHHHHHHhh
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP------------KIVQAAYHLI 288 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~------------~~~~~~~~~~ 288 (298)
+...+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+... +..+.+...+
T Consensus 147 ---------~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (256)
T d1k2wa_ 147 ---------ALVGVYCATKAAVISLTQSAGLNL-IRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQVGAAV 216 (256)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCTTHHHHHHHHHHHHTCCTTHHHHHHHHHS
T ss_pred ---------ccccchhhhhhHHHHHHHHHHHHh-cccCeEEEEEecCCCCchhhhhhhhhhhhhccCChHHHHHHHHhcC
Confidence 888999999999999999999999 889999999999999999976542 3345566688
Q ss_pred hhccc-CCCC
Q 022369 289 PYFIF-NPQE 297 (298)
Q Consensus 289 p~~~~-~pe~ 297 (298)
|++|+ +|||
T Consensus 217 PlgR~~~p~e 226 (256)
T d1k2wa_ 217 PFGRMGRAED 226 (256)
T ss_dssp TTSSCBCHHH
T ss_pred CCCCCcCHHH
Confidence 99998 8875
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=100.00 E-value=5.6e-50 Score=346.08 Aligned_cols=211 Identities=22% Similarity=0.260 Sum_probs=190.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|+.++++++.+++. .++.++++|+++++++++++++
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~v~~~~~~ 72 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELG---------DAARYQHLDVTIEEDWQRVVAY 72 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTG---------GGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---------CceEEEEcccCCHHHHHHHHHH
Confidence 6899999999999999999999999999999999999998888776652 3789999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|+||+||||||+....++.+.+.++|++.+++|+.++++++|+++|+|++++.|+|||+||.+++.+.
T Consensus 73 ~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~------- 145 (254)
T d1hdca_ 73 AREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGL------- 145 (254)
T ss_dssp HHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC-------
T ss_pred HHHHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcccc-------
Confidence 9999999999999999998899999999999999999999999999999999999999999999999876665
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch-HHHHHHHHhhhhccc--CCCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIPYFIF--NPQE 297 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~-~~~~~~~~~~p~~~~--~pe~ 297 (298)
+...+|++||+|+.+|+++|+.|+ +++|||||+|+||+|+|+|..+.. +..+.....+|++|+ +|||
T Consensus 146 --------~~~~~Y~asKaal~~lt~~lA~e~-a~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~g~~Ped 215 (254)
T d1hdca_ 146 --------ALTSSYGASKWGVRGLSKLAAVEL-GTDRIRVNSVHPGMTYTPMTAETGIRQGEGNYPNTPMGRVGNEPGE 215 (254)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHHTCCCSTTSCTTSTTSSCB-CHHH
T ss_pred --------cchhhHHHHHHHHHHHHHHHHHHh-CCCceEEEEeeeCcccCccchhcCHHHHHHHHhCCCCCCCCCCHHH
Confidence 788899999999999999999999 889999999999999999975432 122334457788887 4664
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=100.00 E-value=9.7e-49 Score=337.39 Aligned_cols=212 Identities=22% Similarity=0.334 Sum_probs=177.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|+.|+++|++|++++|++++. ..+.+++. +.++.++++|++|++++++++++
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~--~~~~~~~~------g~~~~~~~~Dvs~~~~v~~~~~~ 73 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPE--AEAAIRNL------GRRVLTVKCDVSQPGDVEAFGKQ 73 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHH--HHHHHHHT------TCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH--HHHHHHHc------CCcEEEEEeeCCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999987532 22233331 24799999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|+||+||||||+....++.+++.|+|++.+++|+.|+++++|+++|+|++++.|+|||+||.++..+.
T Consensus 74 ~~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~------- 146 (247)
T d2ew8a1 74 VISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKI------- 146 (247)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCC-------
T ss_pred HHHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccC-------
Confidence 9999999999999999998899999999999999999999999999999999999999999999999876665
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH--HHHHHH-hhhhccc-CCCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI--VQAAYH-LIPYFIF-NPQE 297 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~--~~~~~~-~~p~~~~-~pe~ 297 (298)
+...+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+..... .+.... ..|+.|+ +|||
T Consensus 147 --------~~~~~Y~asKaal~~ltk~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~l~r~~~ped 217 (247)
T d2ew8a1 147 --------EAYTHYISTKAANIGFTRALASDL-GKDGITVNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPLD 217 (247)
T ss_dssp --------SSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCC------------------CTTSSSCSCCCTHH
T ss_pred --------cccccchhhhccHHHHHHHHHHHh-cccCeEEEEEeeCCCCCccccccccchhHHHHHHHhccCCCCCCHHH
Confidence 888899999999999999999999 88999999999999999998765322 122222 4577777 8875
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=2.7e-49 Score=338.69 Aligned_cols=205 Identities=27% Similarity=0.397 Sum_probs=180.5
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++++||++|||||++|||+++|++|+++|++|++++|+.+.+ .++..+++|++|++++++++
T Consensus 2 ~psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~-----------------~~~~~~~~Dv~~~~~v~~~~ 64 (237)
T d1uzma1 2 KPPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP-----------------KGLFGVEVDVTDSDAVDRAF 64 (237)
T ss_dssp CCCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC-----------------TTSEEEECCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh-----------------cCceEEEEecCCHHHHHHHH
Confidence 3578999999999999999999999999999999999996543 25678999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+++|+||+||||||+...+++.+.+.|+|++++++|+.++++++|.++|+|++++.|+|||+||.++..+.
T Consensus 65 ~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~----- 139 (237)
T d1uzma1 65 TAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGI----- 139 (237)
T ss_dssp HHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC---------
T ss_pred HHHHHhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCC-----
Confidence 999999999999999999998889999999999999999999999999999999999999999999999876665
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHH-HHHHHhhhhccc-CCCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIV-QAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~-~~~~~~~p~~~~-~pe~ 297 (298)
++..+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+..++.. +.....+|++|+ +|||
T Consensus 140 ----------~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~pl~R~~~ped 208 (237)
T d1uzma1 140 ----------GNQANYAASKAGVIGMARSIAREL-SKANVTANVVAPGYIDTDMTRALDERIQQGALQFIPAKRVGTPAE 208 (237)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCHHHHHSCHHHHHHHGGGCTTCSCBCHHH
T ss_pred ----------cccHHHHHHHHHHHHHHHHHHhhh-hcCCceeeeeeeCcCCChhhhccCHHHHHHHHhcCCCCCCcCHHH
Confidence 788899999999999999999999 889999999999999999998876654 445568999999 8876
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-49 Score=339.23 Aligned_cols=209 Identities=25% Similarity=0.370 Sum_probs=187.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++ ..+.++.||++|++++++++++
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~----------~~~~~~~~Dvs~~~~v~~~~~~ 72 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL----------PGAVFILCDVTQEDDVKTLVSE 72 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC----------TTEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----------CCCeEEEccCCCHHHHHHHHHH
Confidence 578999999999999999999999999999999999999888876654 2578899999999999999999
Q ss_pred HhcccCCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+++|+||+||||||+.. ..++++.+.++|++.+++|+.|+++++|+++|+|++++ |+|||+||..+..+.
T Consensus 73 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G~Ii~isS~~~~~~~------ 145 (250)
T d1ydea1 73 TIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ-GNVINISSLVGAIGQ------ 145 (250)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCHHHHHCC------
T ss_pred HHHhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC-CCCcccccccccccc------
Confidence 9999999999999999764 45678999999999999999999999999999998754 999999999876665
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-------hHHHHHHHHhhhhccc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-------PKIVQAAYHLIPYFIF 293 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-------~~~~~~~~~~~p~~~~ 293 (298)
+...+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+.. .+..++.....|++|+
T Consensus 146 ---------~~~~~Y~asKaal~~lt~~lA~e~-a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~ 215 (250)
T d1ydea1 146 ---------AQAVPYVATKGAVTAMTKALALDE-SPYGVRVNCISPGNIWTPLWEELAALMPDPRASIREGMLAQPLGRM 215 (250)
T ss_dssp ---------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECSBCCHHHHHHHTTSSSHHHHHHHHHHTSTTSSC
T ss_pred ---------cCcchhHHHHhhHHHHHHHHHHHh-cccCeEEEEEeeCCCCChhHHHHhhcCCCHHHHHHHHHhcCCCCCC
Confidence 888999999999999999999999 88999999999999999987543 2344556667899998
Q ss_pred -CCCC
Q 022369 294 -NPQE 297 (298)
Q Consensus 294 -~pe~ 297 (298)
+|||
T Consensus 216 g~p~e 220 (250)
T d1ydea1 216 GQPAE 220 (250)
T ss_dssp BCHHH
T ss_pred CCHHH
Confidence 8875
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=100.00 E-value=1.3e-48 Score=338.29 Aligned_cols=210 Identities=24% Similarity=0.269 Sum_probs=190.8
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|+||||||++|||+++|++|+++|++|++++|++++++++.+++++. +.++.+++||++|+++++++++++.++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~------g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 75 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQA------GGHAVAVKVDVSDRDQVFAAVEQARKT 75 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeeCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999998764 247899999999999999999999999
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCcccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
+|+||+||||||+...+++.+++.++|++.+++|+.|+++++|+++|+|.+++ .|+||++||.+++.+.
T Consensus 76 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~---------- 145 (255)
T d1gega_ 76 LGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGN---------- 145 (255)
T ss_dssp TTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCC----------
T ss_pred hCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccC----------
Confidence 99999999999999888999999999999999999999999999999987764 6789999999866655
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH------------HHHHHHHhhhhcc
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK------------IVQAAYHLIPYFI 292 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~------------~~~~~~~~~p~~~ 292 (298)
+....|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.....+ ..+.+.+.+|++|
T Consensus 146 -----~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~R 219 (255)
T d1gega_ 146 -----PELAVYSSSKFAVRGLTQTAARDL-APLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGR 219 (255)
T ss_dssp -----TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBSSHHHHHHHHHHHHHHTCCTTHHHHHHHTTCTTCS
T ss_pred -----cccccchhCHHHHHhhHHHHHHHh-hhhCcEEEEEecCcccChHHhhhhhhhHhhhcccchhHHHHHHhcCCCCC
Confidence 888999999999999999999999 8899999999999999999765432 2344566889999
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 220 ~~~pee 225 (255)
T d1gega_ 220 LSEPED 225 (255)
T ss_dssp CBCHHH
T ss_pred CcCHHH
Confidence 8 8875
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=5.7e-48 Score=337.27 Aligned_cols=217 Identities=25% Similarity=0.303 Sum_probs=184.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++||++|||||++|||+++|++|+++|++|++++|++++++++.+++.+... .+.++.+++||++|+++++++++
T Consensus 1 prL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~---~~~~~~~~~~Dvs~~~~v~~~~~ 77 (272)
T d1xkqa_ 1 PRFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGV---SEKQVNSVVADVTTEDGQDQIIN 77 (272)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC---CGGGEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC---CCCceEEEEccCCCHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999876421 12479999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCC----CccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcC-CccccCCC
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEP----QKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNS-VMHYVGFV 215 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~----~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS-~~~~~~~~ 215 (298)
++.+++|+||+||||||+....++ .+.+.++|++.+++|+.++++++|+++|+|++++ |++|+++| .++..+.
T Consensus 78 ~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~iI~~~Ss~a~~~~~- 155 (272)
T d1xkqa_ 78 STLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQAQ- 155 (272)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSCC-
T ss_pred HHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccC-CccccccchhccccCC-
Confidence 999999999999999999876554 4667788999999999999999999999999866 55555555 4544443
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch--HH--------HHHHH
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP--KI--------VQAAY 285 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~--~~--------~~~~~ 285 (298)
+....|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+... +. .+...
T Consensus 156 --------------~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~ 220 (272)
T d1xkqa_ 156 --------------PDFLYYAIAKAALDQYTRSTAIDL-AKFGIRVNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHK 220 (272)
T ss_dssp --------------CSSHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCT
T ss_pred --------------CCcchhhhHHHHHHHHHHHHHHHh-cccCeEEEEEeeCCCcchhhhccCCchHHHHHHHHHHHHHh
Confidence 888999999999999999999999 889999999999999999976431 11 11222
Q ss_pred Hhhhhccc-CCCC
Q 022369 286 HLIPYFIF-NPQE 297 (298)
Q Consensus 286 ~~~p~~~~-~pe~ 297 (298)
..+|++|+ +|||
T Consensus 221 ~~~PlgR~g~ped 233 (272)
T d1xkqa_ 221 ECIPIGAAGKPEH 233 (272)
T ss_dssp TTCTTSSCBCHHH
T ss_pred cCCCCCCCcCHHH
Confidence 36799998 8875
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.7e-47 Score=332.89 Aligned_cols=216 Identities=24% Similarity=0.311 Sum_probs=179.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++++... .+.++.++++|+++++++++++++
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~---~~~~~~~~~~Dvt~~~~v~~~~~~ 78 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGV---SEQNVNSVVADVTTDAGQDEILST 78 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC---CcCceEEEEccCCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999887532 124799999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCC----CCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCc-cccCCCC
Q 022369 142 WNGRLGPLHVLINNAGIFSIG----EPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVM-HYVGFVD 216 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~----~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~-~~~~~~~ 216 (298)
+.+++|+||+||||||+.... ++.+.+.|+|++.+++|+.|+++++|+++|+|++++ |++|+++|.. +..+.
T Consensus 79 ~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~iI~~~S~~~~~~~~-- 155 (264)
T d1spxa_ 79 TLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHAT-- 155 (264)
T ss_dssp HHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCC--
T ss_pred HHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc-CcceeeeeeccccccC--
Confidence 999999999999999986433 456679999999999999999999999999998765 6666666654 34443
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch----------HHHHHHHH
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP----------KIVQAAYH 286 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~----------~~~~~~~~ 286 (298)
+....|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+... +..+...+
T Consensus 156 -------------~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (264)
T d1spxa_ 156 -------------PDFPYYSIAKAAIDQYTRNTAIDL-IQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKE 221 (264)
T ss_dssp -------------TTSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCCCC--------------HHHHHHHHH
T ss_pred -------------CCchhhhhhhhhHHHHHHHHHHHh-cccCeEEEEEeeCCCCCcchhccCCcHHHHHHHHHHHHHHHh
Confidence 788889999999999999999999 889999999999999999976541 22334556
Q ss_pred hhhhccc-CCCC
Q 022369 287 LIPYFIF-NPQE 297 (298)
Q Consensus 287 ~~p~~~~-~pe~ 297 (298)
.+|++|+ +|||
T Consensus 222 ~~Pl~R~g~ped 233 (264)
T d1spxa_ 222 CVPAGVMGQPQD 233 (264)
T ss_dssp HCTTSSCBCHHH
T ss_pred cCCCCCCcCHHH
Confidence 8899999 8875
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.9e-47 Score=328.24 Aligned_cols=197 Identities=22% Similarity=0.346 Sum_probs=183.5
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
++++.||++|||||++|||+++|++|+++|++|++++|+.++++++.+++.+. +.++.++.||++|++++++++
T Consensus 2 ~~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~------~~~~~~~~~Dvs~~~~v~~~~ 75 (244)
T d1yb1a_ 2 RKSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL------GAKVHTFVVDCSNREDIYSSA 75 (244)
T ss_dssp CCCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------CCcEEEEEeeCCCHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999998763 247999999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+++|++|+||||||+....++.+.+.++|++++++|++|+++++++++|+|++++.|+|||+||.++..+.
T Consensus 76 ~~i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~----- 150 (244)
T d1yb1a_ 76 KKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSV----- 150 (244)
T ss_dssp HHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCH-----
T ss_pred HHHHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCC-----
Confidence 999999999999999999999889999999999999999999999999999999999999999999999877665
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcC--CCCCcEEEEeeCCccccCccCCc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLP--AESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~--~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
|++.+|++||+|+.+|+++|+.|+. ..+||+||+|+||+|+|+|.++.
T Consensus 151 ----------~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~~~~~~ 200 (244)
T d1yb1a_ 151 ----------PFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKNP 200 (244)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTCT
T ss_pred ----------CCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCChhhhCc
Confidence 8889999999999999999999983 23689999999999999998764
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=100.00 E-value=3.3e-47 Score=326.36 Aligned_cols=191 Identities=23% Similarity=0.338 Sum_probs=179.8
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCE-------EEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAH-------VVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~-------Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
++||||||++|||+++|++|+++|++ |++++|+.++++++.+++++. +.++.+++||++|+++++++
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~------g~~~~~~~~Dvt~~~~v~~~ 75 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE------GALTDTITADISDMADVRRL 75 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT------TCEEEEEECCTTSHHHHHHH
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHH
Confidence 47899999999999999999999998 999999999999999888753 24789999999999999999
Q ss_pred HHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc
Q 022369 139 SEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE 218 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~ 218 (298)
++++.+++|++|+||||||+...+++.+.+.++|++.+++|+.|+|+++|+++|+|+++++|+|||+||.++..+.
T Consensus 76 ~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~---- 151 (240)
T d2bd0a1 76 TTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAF---- 151 (240)
T ss_dssp HHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC----
T ss_pred HHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876665
Q ss_pred cccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch
Q 022369 219 DMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP 278 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~ 278 (298)
|+...|++||+|+.+|+++|+.|+ +++|||||+|+||+|+|+|.+..+
T Consensus 152 -----------~~~~~Y~asK~al~~lt~~la~el-~~~gIrvn~i~PG~v~T~~~~~~~ 199 (240)
T d2bd0a1 152 -----------RHSSIYCMSKFGQRGLVETMRLYA-RKCNVRITDVQPGAVYTPMWGKVD 199 (240)
T ss_dssp -----------TTCHHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCBCSTTTCCCC
T ss_pred -----------CCChHHHHHHHHHHHHHHHHHHHh-CcCCeEEEEeeeCcccCchhhhcC
Confidence 888999999999999999999999 889999999999999999987653
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=100.00 E-value=6.8e-47 Score=327.75 Aligned_cols=215 Identities=29% Similarity=0.389 Sum_probs=192.2
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||+||||||++|||+++|++|+++|++|++++|++++++++.+++++.. ..++++.+|++++++++++++
T Consensus 2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~------~~~~~~~~D~s~~~~~~~~~~ 75 (258)
T d1ae1a_ 2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG------LNVEGSVCDLLSRTERDKLMQ 75 (258)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC------CCceEEEeecCCHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999998887642 478899999999999999999
Q ss_pred HHhccc-CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRL-GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~-g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+++ |.+|+||||||.....++.+++.++|++.+++|+.++++++++++|.|.+++.|+||++||.++..+.
T Consensus 76 ~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~----- 150 (258)
T d1ae1a_ 76 TVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSAL----- 150 (258)
T ss_dssp HHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCC-----
T ss_pred HHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccccccc-----
Confidence 999998 68999999999999899999999999999999999999999999999999999999999999866655
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-------hHHHHHHHHhhhhcc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-------PKIVQAAYHLIPYFI 292 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-------~~~~~~~~~~~p~~~ 292 (298)
+...+|+++|+|+.+|++.|++|+ .++|||||+|+||+|+|+|.+.. .+..+.....+|++|
T Consensus 151 ----------~~~~~Y~~sK~al~~lt~~lA~el-~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~plgR 219 (258)
T d1ae1a_ 151 ----------PSVSLYSASKGAINQMTKSLACEW-AKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGR 219 (258)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBC-------------CHHHHHHHHHHSTTCS
T ss_pred ----------ccchhHHHHHHHHHHHHHHHHHhc-CcCcEEEEEEeeCcccCcchhhhhhhhhhhHHHHHHHHhcCCCCC
Confidence 888999999999999999999999 88999999999999999997654 344566667899999
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 220 ~~~ped 225 (258)
T d1ae1a_ 220 AGKPQE 225 (258)
T ss_dssp CBCHHH
T ss_pred CcCHHH
Confidence 9 8875
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=100.00 E-value=6.1e-47 Score=328.70 Aligned_cols=223 Identities=25% Similarity=0.302 Sum_probs=196.6
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||+||||||++|||+++|++|+++|++|++++|+.++++++.+++.+... .++.++++|++|+++++++++
T Consensus 5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g-----~~~~~~~~Dv~~~~~v~~~~~ 79 (260)
T d1h5qa_ 5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG-----VKTKAYQCDVSNTDIVTKTIQ 79 (260)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT-----CCEEEEECCTTCHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHH
Confidence 378999999999999999999999999999999999999999999988876543 478999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhc-CCCCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR-GSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~-~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
++.+++|+||+||||||+....++.+++.++|++.+++|+.|+++++|+++|+|.+ +..|+|++++|........
T Consensus 80 ~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~---- 155 (260)
T d1h5qa_ 80 QIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQ---- 155 (260)
T ss_dssp HHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCE----
T ss_pred HHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccc----
Confidence 99999999999999999998889999999999999999999999999999999865 4567788888876544321
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHH-HHHHHHhhhhccc-CCCC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKI-VQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~-~~~~~~~~p~~~~-~pe~ 297 (298)
....+.++...|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|....++. .+.....+|++|+ +|||
T Consensus 156 ----~~~~~~~~~~~Y~asKaal~~lt~~lA~el-~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~pl~R~g~ped 230 (260)
T d1h5qa_ 156 ----SSLNGSLTQVFYNSSKAACSNLVKGLAAEW-ASAGIRVNALSPGYVNTDQTAHMDKKIRDHQASNIPLNRFAQPEE 230 (260)
T ss_dssp ----EETTEECSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCGGGGGSCHHHHHHHHHTCTTSSCBCGGG
T ss_pred ----cccccCccccchhhhhhhHHHHHHHHHHHh-chhCeEEeecCCCcccCcchhccCHHHHHHHHhcCCCCCCcCHHH
Confidence 112233667889999999999999999999 88999999999999999999887554 4566679999999 9987
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=100.00 E-value=6.7e-47 Score=329.82 Aligned_cols=214 Identities=21% Similarity=0.280 Sum_probs=186.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||+||||||++|||+++|++|+++|++|++++|++++++++.+++... ..+.+++||++|++++++++++
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~-------~~~~~~~~Dv~~~~~v~~~~~~ 75 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP-------DVISFVHCDVTKDEDVRNLVDT 75 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT-------TTEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC-------CceEEEEccCCCHHHHHHHHHH
Confidence 589999999999999999999999999999999999999999988887431 3678899999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCC--CCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIG--EPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+.+++|+||+||||||+.... .+.+.+.|+|++++++|+.|+++++|+++|+|++++.|+||++||..+..+..
T Consensus 76 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~---- 151 (268)
T d2bgka1 76 TIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGE---- 151 (268)
T ss_dssp HHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCT----
T ss_pred HHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccccccccc----
Confidence 999999999999999987644 47789999999999999999999999999999999999999999998766541
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc----hHHHHHHHH--hhhhccc
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL----PKIVQAAYH--LIPYFIF 293 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~----~~~~~~~~~--~~p~~~~ 293 (298)
+....|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.++. .+..+.... ..|++|+
T Consensus 152 ----------~~~~~Y~asKaal~~lt~~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~gr~ 220 (268)
T d2bgka1 152 ----------GVSHVYTATKHAVLGLTTSLCTEL-GEYGIRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTL 220 (268)
T ss_dssp ----------TSCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCCSCCCCTTSSSCCHHHHHHHHHHTCSSCSCC
T ss_pred ----------ccccccchhHHHHHhCHHHHHHHh-ChhCeEEEecCCCCccChHHhhhhcCCHHHHHHHHHhccccCCCC
Confidence 234479999999999999999999 88999999999999999998764 222232222 3467677
Q ss_pred -CCCC
Q 022369 294 -NPQE 297 (298)
Q Consensus 294 -~pe~ 297 (298)
+|||
T Consensus 221 ~~ped 225 (268)
T d2bgka1 221 LRAED 225 (268)
T ss_dssp CCHHH
T ss_pred cCHHH
Confidence 7765
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=2.5e-47 Score=333.51 Aligned_cols=217 Identities=22% Similarity=0.239 Sum_probs=189.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++.+... .+.++.++.+|++|++++++++++
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~---~~~~~~~~~~Dv~~~~~v~~~~~~ 77 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGV---PAEKINAVVADVTEASGQDDIINT 77 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC---CGGGEEEEECCTTSHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC---CCcceEEEEeeCCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999877432 124799999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCC--CCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIG--EPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~--~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+.+++|+||+||||||..... ...+.+.|+|++.+++|+.++|+++|+++|+|+++++|+|+++||.++..+.
T Consensus 78 ~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~----- 152 (274)
T d1xhla_ 78 TLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAH----- 152 (274)
T ss_dssp HHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCC-----
T ss_pred HHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccccC-----
Confidence 999999999999999986543 3456788999999999999999999999999999998999999998755554
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch------HHHHH----HHHhhh
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP------KIVQA----AYHLIP 289 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~------~~~~~----~~~~~p 289 (298)
++...|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|..... +..++ ....+|
T Consensus 153 ----------~~~~~Y~asKaal~~ltk~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~iP 221 (274)
T d1xhla_ 153 ----------SGYPYYACAKAALDQYTRCTAIDL-IQHGVRVNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIP 221 (274)
T ss_dssp ----------TTSHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBCSSHHHHTTCCHHHHHHHHHHHHHCTTTCT
T ss_pred ----------CCCceehhhhhHHHHHHHHHHHHH-hHhCCceeeeccCCCcCchhhhhcccchhhHHHHHHHHHHHcCCC
Confidence 788899999999999999999999 889999999999999999875431 11112 223579
Q ss_pred hccc-CCCC
Q 022369 290 YFIF-NPQE 297 (298)
Q Consensus 290 ~~~~-~pe~ 297 (298)
++|+ +|||
T Consensus 222 lgR~g~ped 230 (274)
T d1xhla_ 222 VGHCGKPEE 230 (274)
T ss_dssp TSSCBCHHH
T ss_pred CCCCcCHHH
Confidence 9998 8875
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.4e-47 Score=334.11 Aligned_cols=219 Identities=20% Similarity=0.341 Sum_probs=195.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
-.++||+||||||++|||+++|++|+++|++|++++|+.++++++.+++.+..... .+.++.+++||++|+++++++++
T Consensus 8 g~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~-~~~~~~~~~~Dvs~~~~v~~~~~ 86 (297)
T d1yxma1 8 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPT-KQARVIPIQCNIRNEEEVNNLVK 86 (297)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTT-CCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccc-cCceEEEEeccCCCHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999999998765432 24589999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+++|+||+||||||+....++.+.+.++|++++++|+.|+|+++|+++|.|++++.|+||++||.. .
T Consensus 87 ~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~-~--------- 156 (297)
T d1yxma1 87 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-K--------- 156 (297)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-T---------
T ss_pred HHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccc-c---------
Confidence 999999999999999999988999999999999999999999999999999999999999999997742 2
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-----hHHHHHHHHhhhhccc-C
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-----PKIVQAAYHLIPYFIF-N 294 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-----~~~~~~~~~~~p~~~~-~ 294 (298)
..++....|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|++.... ++..+.....+|++|+ +
T Consensus 157 ------~~~~~~~~Y~asKaal~~ltk~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~plgR~g~ 229 (297)
T d1yxma1 157 ------AGFPLAVHSGAARAGVYNLTKSLALEW-ACSGIRINCVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAKRIGV 229 (297)
T ss_dssp ------TCCTTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEECSBCCTGGGTTSGGGGGGGGTTGGGGSTTSSCBC
T ss_pred ------ccccccccchhHHHHHHHHHHHHHHHh-cccCceEEEeeeCcCcCcchhhhccccCHHHHHHHHhcCCCCCCcC
Confidence 233788899999999999999999999 88999999999999999997543 2233455568899999 8
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 230 ped 232 (297)
T d1yxma1 230 PEE 232 (297)
T ss_dssp THH
T ss_pred HHH
Confidence 875
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=7.1e-48 Score=333.02 Aligned_cols=210 Identities=23% Similarity=0.259 Sum_probs=183.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++. .+..++++|++|++++++++++
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~---------~~~~~~~~Dv~~~~~~~~~~~~ 73 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG---------ERSMFVRHDVSSEADWTLVMAA 73 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC---------TTEEEECCCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC---------CCeEEEEeecCCHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999998887762 2688899999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||+...+++.+.+.++|++.+++|+.++|+++|+++|+|+++ +|+|||+||.++..+.
T Consensus 74 ~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~G~Iv~isS~~~~~~~------- 145 (253)
T d1hxha_ 74 VQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET-GGSIINMASVSSWLPI------- 145 (253)
T ss_dssp HHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-CEEEEEECCGGGTSCC-------
T ss_pred HHHHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc-CCceecccchhhhcCc-------
Confidence 99999999999999999988899999999999999999999999999999999764 5999999999876655
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCC--CCcEEEEeeCCccccCccCCc-h-----HHHHHHHHhhhhccc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAE--SGINVVCVSPGIVSTNVARDL-P-----KIVQAAYHLIPYFIF 293 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~--~gI~v~~v~Pg~v~T~~~~~~-~-----~~~~~~~~~~p~~~~ 293 (298)
+...+|++||+|+.+|+++|+.|+ ++ +|||||+|+||+|+|+|.+.. + +.........|++|+
T Consensus 146 --------~~~~~Y~asKaal~~lt~~lA~e~-~~~g~~IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~gr~ 216 (253)
T d1hxha_ 146 --------EQYAGYSASKAAVSALTRAAALSC-RKQGYAIRVNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRA 216 (253)
T ss_dssp --------TTBHHHHHHHHHHHHHHHHHHHHH-HHHTCCEEEEEEEESEECCHHHHHHSCTTCCHHHHBCBTTTBTTCCE
T ss_pred --------cccccccchhHHHHHHHHHHHHHH-hhcCCCEEEEEEeECCCcCHhHHhhCcchhhHHHHHhCccccccCCC
Confidence 888899999999999999999999 54 579999999999999987532 1 111112224466666
Q ss_pred -CCCC
Q 022369 294 -NPQE 297 (298)
Q Consensus 294 -~pe~ 297 (298)
+|||
T Consensus 217 ~~ped 221 (253)
T d1hxha_ 217 YMPER 221 (253)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 6765
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.3e-47 Score=324.98 Aligned_cols=206 Identities=27% Similarity=0.436 Sum_probs=184.2
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++. .+..+.+|++|++++++++
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~----------~~~~~~~Dv~~~~~v~~~~-- 69 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP----------GIEPVCVDLGDWDATEKAL-- 69 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST----------TCEEEECCTTCHHHHHHHH--
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC----------CCeEEEEeCCCHHHHHHHH--
Confidence 6899999999999999999999999999999999999998888766542 4678899999999887655
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhc-CCCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR-GSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~-~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+++|+||+||||||+...+++.+++.++|++.+++|+.++++++|.++|.|.+ +++|+|||+||..+..+.
T Consensus 70 --~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~------ 141 (242)
T d1cyda_ 70 --GGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTF------ 141 (242)
T ss_dssp --TTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------
T ss_pred --HHcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccC------
Confidence 56799999999999998889999999999999999999999999999998765 457899999998766554
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~pe 296 (298)
|....|+++|+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+.. ++..+.....+|++|+ +||
T Consensus 142 ---------~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~R~~~pe 211 (242)
T d1cyda_ 142 ---------PNLITYSSTKGAMTMLTKAMAMEL-GPHKIRVNSVNPTVVLTDMGKKVSADPEFARKLKERHPLRKFAEVE 211 (242)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBTTHHHHHHTCCHHHHHHHHHHSTTSSCBCHH
T ss_pred ---------CccccccchHHHHHHHHHHHHHHh-CccCeecccCCCCCccCHHHHhhcCCHHHHHHHHhcCCCCCCcCHH
Confidence 888999999999999999999999 88999999999999999997654 4566677779999999 887
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 212 e 212 (242)
T d1cyda_ 212 D 212 (242)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.6e-46 Score=322.95 Aligned_cols=206 Identities=26% Similarity=0.380 Sum_probs=184.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.++||++|||||++|||+++|++|+++|++|++++|++++++++.+++. .+..+.+|++|++++++++
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~----------~~~~~~~Dv~d~~~v~~~~-- 71 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECP----------GIEPVCVDLGDWEATERAL-- 71 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST----------TCEEEECCTTCHHHHHHHH--
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC----------CCeEEEEeCCCHHHHHHHH--
Confidence 5899999999999999999999999999999999999999888876642 4678899999999987665
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhc-CCCCeEEEEcCCccccCCCCcccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR-GSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~-~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+++|+||+||||||+...+++.+.+.++|++.+++|+.++++++|.++|.|.+ ++.|+|||+||.++..+.
T Consensus 72 --~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~------ 143 (244)
T d1pr9a_ 72 --GSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAV------ 143 (244)
T ss_dssp --TTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCC------
T ss_pred --HHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccc------
Confidence 45799999999999998899999999999999999999999999999997654 567999999999876655
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhccc-CCC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFIF-NPQ 296 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~~-~pe 296 (298)
+....|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+.. ++..+.....+|++|+ +||
T Consensus 144 ---------~~~~~Y~asKaal~~lt~~lA~el-~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~pl~R~~~pe 213 (244)
T d1pr9a_ 144 ---------TNHSVYCSTKGALDMLTKVMALEL-GPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNRIPLGKFAEVE 213 (244)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCSHHHHTTSCSHHHHHHHHTTCTTCSCBCHH
T ss_pred ---------cchhhhhhhHHHHHHHHHHHHHHh-CCCcEEEEEEeeCcCcChHHhhhccChHHHHHHHhcCCCCCCcCHH
Confidence 888899999999999999999999 88999999999999999998654 3455666778999998 887
Q ss_pred C
Q 022369 297 E 297 (298)
Q Consensus 297 ~ 297 (298)
|
T Consensus 214 e 214 (244)
T d1pr9a_ 214 H 214 (244)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-46 Score=324.95 Aligned_cols=221 Identities=25% Similarity=0.329 Sum_probs=193.0
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+.+++||+||||||++|||+++|+.|+++|++|++++|++++++++.+++++... +.++.+++||+++++++++++
T Consensus 5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~----~~~~~~~~~Dls~~~~v~~~v 80 (257)
T d1xg5a_ 5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGY----PGTLIPYRCDLSNEEDILSMF 80 (257)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC----SSEEEEEECCTTCHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC----CceEEEEEccCCCHHHHHHHH
Confidence 4568999999999999999999999999999999999999999999999987532 248999999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC--CCeEEEEcCCccccCCCCc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS--PSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~--~g~Iv~isS~~~~~~~~~~ 217 (298)
+++.+++|+||+||||||....+++.+.+.++|++.+++|+.++|++++.++|.|++++ +|+||++||.+++...
T Consensus 81 ~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~--- 157 (257)
T d1xg5a_ 81 SAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVL--- 157 (257)
T ss_dssp HHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCC---
T ss_pred HHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCC---
Confidence 99999999999999999999889999999999999999999999999999999998754 6999999999875443
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcC-CCCCcEEEEeeCCccccCccCCchH-HHHHHHHhhhhccc-C
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLP-AESGINVVCVSPGIVSTNVARDLPK-IVQAAYHLIPYFIF-N 294 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~-~~~gI~v~~v~Pg~v~T~~~~~~~~-~~~~~~~~~p~~~~-~ 294 (298)
+.+....|+++|+|+.+|+++|+.|+. .++||+||+|+||+++|++.....+ ..+......|++++ +
T Consensus 158 ----------p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~~~~~~~~~~~~~~~~~~r~~~ 227 (257)
T d1xg5a_ 158 ----------PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLK 227 (257)
T ss_dssp ----------SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHHHTTTCHHHHHHHHC---CBC
T ss_pred ----------CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhhhcChhhHHHHHhcCCCCCCcC
Confidence 225567799999999999999999973 5689999999999999999765432 23455667888888 7
Q ss_pred CCC
Q 022369 295 PQE 297 (298)
Q Consensus 295 pe~ 297 (298)
|||
T Consensus 228 ped 230 (257)
T d1xg5a_ 228 PED 230 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 775
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=100.00 E-value=8.8e-46 Score=323.93 Aligned_cols=209 Identities=20% Similarity=0.262 Sum_probs=181.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|++|+++|++|++++|++++++++.+++. .++..+.+|+++++++++++++
T Consensus 2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~---------~~~~~~~~Dv~~~~~~~~~~~~ 72 (276)
T d1bdba_ 2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHG---------DNVLGIVGDVRSLEDQKQAASR 72 (276)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG---------GGEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC---------CCeeEEecccccHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999888776642 3789999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCC-----CCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC
Q 022369 142 WNGRLGPLHVLINNAGIFSIGE-----PQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD 216 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~-----~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~ 216 (298)
+.+++|++|+||||||+..... ..+.+.++|++++++|+.|+++++|+++|+|++++ |+||+++|..+..+.
T Consensus 73 ~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~~~~~~~-- 149 (276)
T d1bdba_ 73 CVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISNAGFYPN-- 149 (276)
T ss_dssp HHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTSTT--
T ss_pred HHHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeechhccCC--
Confidence 9999999999999999865432 24455667999999999999999999999998765 899999998866655
Q ss_pred cccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch-----------HHHHHHH
Q 022369 217 TEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-----------KIVQAAY 285 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~-----------~~~~~~~ 285 (298)
+....|++||+|+.+|+++|+.|+ +++ ||||+|+||+|+|+|..... +..+.+.
T Consensus 150 -------------~~~~~Y~asKaal~~ltr~lA~el-a~~-IrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (276)
T d1bdba_ 150 -------------GGGPLYTAAKHAIVGLVRELAFEL-APY-VRVNGVGSGGINSDLRGPSSLGMGSKAISTVPLADMLK 214 (276)
T ss_dssp -------------SSCHHHHHHHHHHHHHHHHHHHHH-TTT-CEEEEEEECCCCSCCCCCGGGC---------CHHHHHT
T ss_pred -------------CCCchHHHHHHHHHHHHHHHHHHh-hcc-eEEcccCCCCEecCcCCccchhhhhhccCcHHHHHHHH
Confidence 788899999999999999999999 664 99999999999999865421 1233445
Q ss_pred Hhhhhccc-CCCC
Q 022369 286 HLIPYFIF-NPQE 297 (298)
Q Consensus 286 ~~~p~~~~-~pe~ 297 (298)
..+|++|+ +|||
T Consensus 215 ~~~PlgR~g~pee 227 (276)
T d1bdba_ 215 SVLPIGRMPEVEE 227 (276)
T ss_dssp TTCTTSSCCCGGG
T ss_pred hcCCCCCCcCHHH
Confidence 58899999 8887
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-46 Score=321.96 Aligned_cols=207 Identities=24% Similarity=0.370 Sum_probs=183.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
++||+||||||++|||+++|++|+++|++|++++|+.++++++.+++.+... +.++.++++|++|+++++++++++
T Consensus 1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~ 76 (254)
T d2gdza1 1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE----PQKTLFIQCDVADQQQLRDTFRKV 76 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSC----GGGEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC----CCcEEEEEeecCCHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999999888876432 248999999999999999999999
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC---CCeEEEEcCCccccCCCCccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS---PSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~---~g~Iv~isS~~~~~~~~~~~~ 219 (298)
.+++|+||+||||||+.. .++|++.+++|+.+++++++.++|+|.+++ +|+|||+||.++..+.
T Consensus 77 ~~~~G~iDilVnnAg~~~--------~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~----- 143 (254)
T d2gdza1 77 VDHFGRLDILVNNAGVNN--------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPV----- 143 (254)
T ss_dssp HHHHSCCCEEEECCCCCC--------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC-----
T ss_pred HHHcCCcCeecccccccc--------cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCC-----
Confidence 999999999999999853 256999999999999999999999998764 4789999999876665
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHH--HHHHcCCCCCcEEEEeeCCccccCccCCch---------HHHHHHHHhh
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSI--LQKRLPAESGINVVCVSPGIVSTNVARDLP---------KIVQAAYHLI 288 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~--l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---------~~~~~~~~~~ 288 (298)
+...+|++||+|+.+|+++ |+.|+ .++|||||+|+||+|+|+|.+.+. +..+.+...+
T Consensus 144 ----------~~~~~Y~asKaal~~ltrs~ala~e~-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (254)
T d2gdza1 144 ----------AQQPVYCASKHGIVGFTRSAALAANL-MNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMI 212 (254)
T ss_dssp ----------TTCHHHHHHHHHHHHHHHHHHHHHHH-HTCCEEEEEEEESCBSSHHHHGGGCHHHHGGGGGGHHHHHHHH
T ss_pred ----------CCccchHHHHHHHHHHHHHHHHHHHh-cCCCEEEEEEEcCCCCChhhhhccccccccccHHHHHHHHhcC
Confidence 8888999999999999996 78899 889999999999999999987642 2234556688
Q ss_pred hhccc-CCCC
Q 022369 289 PYFIF-NPQE 297 (298)
Q Consensus 289 p~~~~-~pe~ 297 (298)
|++|+ +|||
T Consensus 213 p~~r~~~ped 222 (254)
T d2gdza1 213 KYYGILDPPL 222 (254)
T ss_dssp HHHCCBCHHH
T ss_pred CCCCCcCHHH
Confidence 99888 8875
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=100.00 E-value=1.7e-46 Score=324.35 Aligned_cols=203 Identities=20% Similarity=0.250 Sum_probs=182.4
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
|+|||||++|||+++|++|+++|++|++++|+.++++++.+.... +.++|++++++++++++++.++|
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~------------~~~~dv~~~~~~~~~~~~~~~~~ 69 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAET------------YPQLKPMSEQEPAELIEAVTSAY 69 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHH------------CTTSEECCCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCc------------EEEeccCCHHHHHHHHHHHHHHc
Confidence 799999999999999999999999999999999988877543222 34689999999999999999999
Q ss_pred CCccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 147 GPLHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 147 g~idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
|+||+||||||+.. .+++.+++.|+|++.+++|+.++|+++|+++|+|++++.|+|||+||.++..+.
T Consensus 70 G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~----------- 138 (252)
T d1zmta1 70 GQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPW----------- 138 (252)
T ss_dssp SCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCC-----------
T ss_pred CCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccccc-----------
Confidence 99999999999864 478899999999999999999999999999999999999999999999876655
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---------hHHHHHHHHhhhhccc-CC
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---------PKIVQAAYHLIPYFIF-NP 295 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---------~~~~~~~~~~~p~~~~-~p 295 (298)
+...+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.... ++..+...+.+|++|+ +|
T Consensus 139 ----~~~~~Y~asKaal~~lt~~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~e~~~~~~~~~pl~R~g~p 213 (252)
T d1zmta1 139 ----KELSTYTSARAGACTLANALSKEL-GEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQ 213 (252)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCCEEEEEESSBCCBTCCSSCBHHHHTTCHHHHHHHHHHSSSSSCBCH
T ss_pred ----ccccccccccccHHHHHHHHHHHh-cccCcEEEEEecCCCcCcchhhhhhcccccCCHHHHHHHHhcCCCCCCcCH
Confidence 788899999999999999999999 88999999999999999998653 3445666778999999 88
Q ss_pred CC
Q 022369 296 QE 297 (298)
Q Consensus 296 e~ 297 (298)
||
T Consensus 214 ed 215 (252)
T d1zmta1 214 KE 215 (252)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=100.00 E-value=1.5e-45 Score=316.26 Aligned_cols=208 Identities=23% Similarity=0.274 Sum_probs=181.5
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.++||+||||||++|||+++|++|+++|++|++++|+.+++++..+++ +.++.++++|+++++++++++++
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---------~~~~~~~~~Dls~~~~i~~~~~~ 72 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL---------EAEAIAVVADVSDPKAVEAVFAE 72 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC---------CSSEEEEECCTTSHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---------CCceEEEEecCCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999998887665543 24789999999999999999999
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+++|++|+||||||.....++.+.+.++|++.+++|+.+++.++|+++|+|.++ +.|+++||.+..
T Consensus 73 i~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~--~~i~~~ss~a~~---------- 140 (241)
T d2a4ka1 73 ALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEG--GSLVLTGSVAGL---------- 140 (241)
T ss_dssp HHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTT--CEEEEECCCTTC----------
T ss_pred HHHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccc--cceeeccccccc----------
Confidence 99999999999999999988999999999999999999999999999999998763 467777765422
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch-HHHHHHHHhhhhccc-CCCC
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-KIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~-~~~~~~~~~~p~~~~-~pe~ 297 (298)
+.|++..|+++|+|+++|+++|+.|+ .++|||||+|+||+|+|+|.+..+ +..+.+.+..|++|+ +|||
T Consensus 141 ------~~~~~~~Y~~sK~al~~lt~~lA~el-~~~gIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~p~~r~~~p~d 211 (241)
T d2a4ka1 141 ------GAFGLAHYAAGKLGVVGLARTLALEL-ARKGVRVNVLLPGLIQTPMTAGLPPWAWEQEVGASPLGRAGRPEE 211 (241)
T ss_dssp ------CHHHHHHHHHCSSHHHHHHHHHHHHH-TTTTCEEEEEEECSBCCGGGTTSCHHHHHHHHHTSTTCSCBCHHH
T ss_pred ------cccCccccchhhHHHHHHHHHHHHHH-hHhCCEEeeeccCcCCCHHHHhhhHhHHHHHHhCCCCCCCcCHHH
Confidence 22677889999999999999999999 899999999999999999998865 455667779999998 8875
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=4.8e-45 Score=311.86 Aligned_cols=198 Identities=22% Similarity=0.315 Sum_probs=174.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
++||++|||||++|||+++|++|+++|++|++++|+++.+++. ...++.||+++. ++.+
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~---------------~~~~~~~Dv~~~------~~~~ 60 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS---------------GHRYVVCDLRKD------LDLL 60 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT---------------CSEEEECCTTTC------HHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc---------------CCcEEEcchHHH------HHHH
Confidence 6799999999999999999999999999999999997665432 345678999864 3455
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.+++|+||+||||||+....++.+++.++|++.+++|+.++++++|+++|+|++++.|+||+++|..+..+.
T Consensus 61 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~-------- 132 (234)
T d1o5ia_ 61 FEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPI-------- 132 (234)
T ss_dssp HHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCC--------
T ss_pred HHHhCCCcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccccc--------
Confidence 667899999999999988889999999999999999999999999999999999999999999998765554
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-h-HHHHHHHHhhhhccc-CCCC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-P-KIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-~-~~~~~~~~~~p~~~~-~pe~ 297 (298)
+....|++||+|+.+|+++|+.|+ .++|||||+|+||+++|++.+.. + +..+...+.+|++|+ +|||
T Consensus 133 -------~~~~~Y~asKaal~~ltk~lA~el-a~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~pl~R~~~ped 202 (234)
T d1o5ia_ 133 -------ENLYTSNSARMALTGFLKTLSFEV-APYGITVNCVAPGWTETERVKELLSEEKKKQVESQIPMRRMAKPEE 202 (234)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSBCCTTHHHHSCHHHHHHHHTTSTTSSCBCHHH
T ss_pred -------cccccchhHHHHHHHHHHHHHHHh-cccCeEEeecccCccchhhhhhhcCHHHHHHHHhcCCCCCCcCHHH
Confidence 788899999999999999999999 88999999999999999998653 3 344556668999999 8875
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.7e-44 Score=311.85 Aligned_cols=215 Identities=18% Similarity=0.207 Sum_probs=186.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHH---cCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAE---SGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~---~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
..++||++|||||++|||+++|++||+ +|++|++++|+.++++++.+++....++ .++.+++||+++++++++
T Consensus 2 ~~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~----~~~~~~~~Dvs~~~~v~~ 77 (259)
T d1oaaa_ 2 DGLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPD----LKVVLAAADLGTEAGVQR 77 (259)
T ss_dssp CCCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTT----SEEEEEECCTTSHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCC----ceEEEEEccCCCHHHHHH
Confidence 468899999999999999999999997 7999999999999999999999876432 489999999999999999
Q ss_pred HHHHHhc----ccCCccEEEEccCCCC---CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC--CCeEEEEcCC
Q 022369 138 FSEAWNG----RLGPLHVLINNAGIFS---IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS--PSRIINVNSV 208 (298)
Q Consensus 138 ~~~~~~~----~~g~idilVnnag~~~---~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~--~g~Iv~isS~ 208 (298)
+++.+.+ .++.+|++|||||+.. .+++.+.+.++|++++++|+.++++++|+++|+|++++ .|+|||+||.
T Consensus 78 l~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~ 157 (259)
T d1oaaa_ 78 LLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSL 157 (259)
T ss_dssp HHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCG
T ss_pred HHHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccc
Confidence 9998876 3468999999999764 34577889999999999999999999999999999875 5899999999
Q ss_pred ccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------hHHHH
Q 022369 209 MHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------PKIVQ 282 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------~~~~~ 282 (298)
+++.+. +++..|++||+|+.+|+++|+.|. +|||||+|+||+|+|+|.+.. ++..+
T Consensus 158 ~~~~~~---------------~~~~~Y~asKaal~~lt~~la~e~---~gIrVn~v~PG~i~T~~~~~~~~~~~~~~~~~ 219 (259)
T d1oaaa_ 158 CALQPY---------------KGWGLYCAGKAARDMLYQVLAAEE---PSVRVLSYAPGPLDNDMQQLARETSKDPELRS 219 (259)
T ss_dssp GGTSCC---------------TTCHHHHHHHHHHHHHHHHHHHHC---TTEEEEEEECCSBSSHHHHHHHHHCSCHHHHH
T ss_pred cccCCC---------------ccchHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEcCCCCCHHHHHhhhcCCCHHHHH
Confidence 866655 888999999999999999999994 589999999999999997543 34445
Q ss_pred HHHHhhhhccc-CCCC
Q 022369 283 AAYHLIPYFIF-NPQE 297 (298)
Q Consensus 283 ~~~~~~p~~~~-~pe~ 297 (298)
.+....|.+++ +|||
T Consensus 220 ~~~~~~~~~r~~~p~e 235 (259)
T d1oaaa_ 220 KLQKLKSDGALVDCGT 235 (259)
T ss_dssp HHHHHHHTTCSBCHHH
T ss_pred HHHhcCCCCCCCCHHH
Confidence 55567788777 7765
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=2.1e-44 Score=312.45 Aligned_cols=214 Identities=23% Similarity=0.324 Sum_probs=186.5
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEE-cCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAV-RNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
++++||+||||||++|||+++|++|+++|++|++++ |+.+.++++.+++++. +.++.++++|++|++++++++
T Consensus 2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~------g~~~~~~~~D~~~~~~v~~~~ 75 (259)
T d1ja9a_ 2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKL------GAQGVAIQADISKPSEVVALF 75 (259)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTSHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHc------CCCceEecCCCCCHHHHHHHH
Confidence 468999999999999999999999999999999875 4556678888887763 247899999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+++|+||+||||||+...+++.+.+.++|++.+++|+.++++++|.++|+|++ +|++++++|..+..
T Consensus 76 ~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~--~g~~iii~s~~~~~------- 146 (259)
T d1ja9a_ 76 DKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRR--GGRIILTSSIAAVM------- 146 (259)
T ss_dssp HHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEE--EEEEEEECCGGGTC-------
T ss_pred HHHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhc--CCcccccccccccc-------
Confidence 999999999999999999998899999999999999999999999999999999976 36888888765433
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc--------------hHHHHHHH
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL--------------PKIVQAAY 285 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~--------------~~~~~~~~ 285 (298)
.+.+.+..|++||+|+.+|+++|++|+ +++|||||+|+||+|+|+|.+.. .+..+.+.
T Consensus 147 -------~~~~~~~~Y~asK~al~~l~r~lA~e~-~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (259)
T d1ja9a_ 147 -------TGIPNHALYAGSKAAVEGFCRAFAVDC-GAKGVTVNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLA 218 (259)
T ss_dssp -------CSCCSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBSSHHHHHHGGGTSTTCCTTCCHHHHHHHHH
T ss_pred -------cCCCCchhHHHHHHHHHHHHHHHHHHH-hhcCeEEeccCcCCccChhhhhhhhhhhhhhcccCCHHHHHHHHH
Confidence 233788899999999999999999999 88999999999999999985321 23455666
Q ss_pred Hhhhhccc-CCCC
Q 022369 286 HLIPYFIF-NPQE 297 (298)
Q Consensus 286 ~~~p~~~~-~pe~ 297 (298)
...|++|+ +|||
T Consensus 219 ~~~pl~R~g~p~e 231 (259)
T d1ja9a_ 219 NMNPLKRIGYPAD 231 (259)
T ss_dssp HTSTTSSCBCHHH
T ss_pred hCCCCCCCcCHHH
Confidence 78999998 7765
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=2.3e-44 Score=318.28 Aligned_cols=196 Identities=20% Similarity=0.249 Sum_probs=178.2
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC---------chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCC
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN---------LKAANELIQKWQEEWSGKGLPLNIEAMELDLLS 131 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~ 131 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+ .+.++++.+++.. +.....+|+++
T Consensus 3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~d~~~ 73 (302)
T d1gz6a_ 3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRR---------RGGKAVANYDS 73 (302)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHH---------TTCEEEEECCC
T ss_pred cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhh---------cccccccccch
Confidence 46889999999999999999999999999999998654 4566777777665 33456789999
Q ss_pred HHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccc
Q 022369 132 LDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY 211 (298)
Q Consensus 132 ~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~ 211 (298)
.++++++++++.+++|+||+||||||+...+++.+++.++|++++++|+.|+|+++|+++|+|++++.|+|||+||.+++
T Consensus 74 ~~~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~ 153 (302)
T d1gz6a_ 74 VEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGI 153 (302)
T ss_dssp GGGHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred cCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHH
Q 022369 212 VGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIV 281 (298)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~ 281 (298)
.+. ++...|++||+|+.+|+++|+.|+ .++|||||+|+||++.|++....++..
T Consensus 154 ~~~---------------~~~~~Y~asKaal~~lt~~la~E~-~~~gIrVN~I~PG~~~t~~~~~~~~~~ 207 (302)
T d1gz6a_ 154 YGN---------------FGQANYSAAKLGLLGLANTLVIEG-RKNNIHCNTIAPNAGSRMTETVMPEDL 207 (302)
T ss_dssp HCC---------------TTCHHHHHHHHHHHHHHHHHHHHT-GGGTEEEEEEEEECCSTTTGGGSCHHH
T ss_pred CCC---------------CCcHHHHHHHHHHHHHHHHHHHHH-hccCCceeeeCCCCCCcchhhcCcHhh
Confidence 665 888999999999999999999999 889999999999999998877766543
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=1.1e-43 Score=307.40 Aligned_cols=211 Identities=17% Similarity=0.149 Sum_probs=177.5
Q ss_pred CCCCCEEEEeCCCC--chHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTS--GIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~--GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
+++||++|||||+| |||+++|++|+++|++|++++|+++..++..+.... . ....++++|++|++++++++
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~-~------~~~~~~~~D~~~~~~v~~~~ 77 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEA-L------GGALLFRADVTQDEELDALF 77 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH-T------TCCEEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhc-c------CcccccccccCCHHHHHHHH
Confidence 68999999999987 999999999999999999999997665554433332 1 25678999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCC----CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFS----IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~----~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++.+++|+||+||||||+.. ..++.+.+.++|+..+++|+.+++.++|.++|+|++ +|+|||+||..+..+.
T Consensus 78 ~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~--~G~Iv~isS~~~~~~~- 154 (256)
T d1ulua_ 78 AGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLRE--GGGIVTLTYYASEKVV- 154 (256)
T ss_dssp HHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEE--EEEEEEEECGGGTSBC-
T ss_pred HHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhcc--CCEEEEEeehHhcCCC-
Confidence 999999999999999999864 345678899999999999999999999999999976 4899999999866555
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc---hHHHHHHHHhhhhcc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL---PKIVQAAYHLIPYFI 292 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~---~~~~~~~~~~~p~~~ 292 (298)
+...+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|++.+.. .+..+...+.+|++|
T Consensus 155 --------------~~~~~Y~asKaal~~ltr~lA~el-a~~gIrVN~I~PG~i~t~~~~~~~~~~~~~~~~~~~~pl~R 219 (256)
T d1ulua_ 155 --------------PKYNVMAIAKAALEASVRYLAYEL-GPKGVRVNAISAGPVRTVAARSIPGFTKMYDRVAQTAPLRR 219 (256)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCC----------CHHHHHHHHHHSTTSS
T ss_pred --------------CCchHHHHHHHHHHHHHHHHHHHh-cccCCEEeeeccceeeeccccchhhhHHHHHHHHhcCCCCC
Confidence 888999999999999999999999 88999999999999999998765 345566777899999
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 220 ~~~ped 225 (256)
T d1ulua_ 220 NITQEE 225 (256)
T ss_dssp CCCHHH
T ss_pred CcCHHH
Confidence 8 8875
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.7e-43 Score=307.81 Aligned_cols=192 Identities=24% Similarity=0.321 Sum_probs=165.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEE---EEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVM---AVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil---~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.|+||||||++|||+++|++|+++|++|++ ++|+.+..+++.+..++... .+.++.+++||++|++++++++++
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~Dv~~~~~~~~~~~~ 78 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALAC---PPGSLETLQLDVRDSKSVAAARER 78 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTC---CTTSEEEEECCTTCHHHHHHHHHT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhc---cCCceEEEeccccchHhhhhhhhh
Confidence 378999999999999999999999997554 45666665555554444322 235899999999999999999998
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
+.+ |.+|+||||||....+++.+.+.|+|++.+++|+.|+++++++++|+|++++.|+|||+||.++..+.
T Consensus 79 ~~~--g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~------- 149 (285)
T d1jtva_ 79 VTE--GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGL------- 149 (285)
T ss_dssp CTT--SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCC-------
T ss_pred ccc--cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCC-------
Confidence 754 79999999999999899999999999999999999999999999999999999999999999877665
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
|....|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|+|.++.
T Consensus 150 --------~~~~~Y~asKaal~~l~~~la~El-~~~gIrVn~V~PG~v~T~~~~~~ 196 (285)
T d1jtva_ 150 --------PFNDVYCASKFALEGLCESLAVLL-LPFGVHLSLIECGPVHTAFMEKV 196 (285)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCC------
T ss_pred --------CCchHHHHHHHHHHHHHHHHHHHh-hccCcEEEEEecCCCCChHHHHh
Confidence 888999999999999999999999 88999999999999999998754
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=100.00 E-value=1.1e-42 Score=303.63 Aligned_cols=214 Identities=22% Similarity=0.342 Sum_probs=186.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC-chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN-LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.+++||++|||||++|||+++|++|+++|++|++++|+ .+.++++.+++++. +.++.++++|++|++++++++
T Consensus 14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~------g~~~~~~~~D~~~~~~v~~~~ 87 (272)
T d1g0oa_ 14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKN------GSDAACVKANVGVVEDIVRMF 87 (272)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHT------TCCEEEEECCTTCHHHHHHHH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhh------CCceeeEeCCCCCHHHHHHHH
Confidence 46999999999999999999999999999999999887 45677777777663 247999999999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+++.+.+|+||++|||+|.....++.+.+.++|++.+++|+.++++++|+++|+|++ +|++++++|..+...
T Consensus 88 ~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~--~g~~i~i~s~~~~~~------ 159 (272)
T d1g0oa_ 88 EEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEI--GGRLILMGSITGQAK------ 159 (272)
T ss_dssp HHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCT--TCEEEEECCGGGTCS------
T ss_pred HHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccc--ccccccccccccccc------
Confidence 999999999999999999998889999999999999999999999999999999976 469999988764332
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc------------hHHH--HHHH
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL------------PKIV--QAAY 285 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~------------~~~~--~~~~ 285 (298)
+.+....|+++|+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+.. .+.. ....
T Consensus 160 --------~~~~~~~Y~asKaal~~ltk~lA~e~-~~~gIrVN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (272)
T d1g0oa_ 160 --------AVPKHAVYSGSKGAIETFARCMAIDM-ADKKITVNVVAPGGIKTDMYHAVCREYIPNGENLSNEEVDEYAAV 230 (272)
T ss_dssp --------SCSSCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEEEECCBSSHHHHHHGGGGSTTCTTCCHHHHHHHHHH
T ss_pred --------cccchhhHHHHHHHHHHHHHHHHHHh-chhCeEEEEEccCCcCChHHHHHHHhhhhcccccchHHHHHHHHH
Confidence 33777889999999999999999999 88999999999999999986432 1111 2344
Q ss_pred Hhhhhccc-CCCC
Q 022369 286 HLIPYFIF-NPQE 297 (298)
Q Consensus 286 ~~~p~~~~-~pe~ 297 (298)
..+|++|+ +|||
T Consensus 231 ~~~PlgR~~~pee 243 (272)
T d1g0oa_ 231 QWSPLRRVGLPID 243 (272)
T ss_dssp HSCTTCSCBCHHH
T ss_pred ccCCCCCCcCHHH
Confidence 57899998 8775
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=100.00 E-value=5e-42 Score=302.75 Aligned_cols=220 Identities=17% Similarity=0.233 Sum_probs=192.1
Q ss_pred CCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 57 PLPLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 57 ~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
..|..+++||+||||||++|||+++|++|+++|++|++++|+.++++++.+++.+..+ .++.++++|++++++++
T Consensus 17 ~~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g-----~~~~~~~~D~~~~~~v~ 91 (294)
T d1w6ua_ 17 MLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG-----NKVHAIQCDVRDPDMVQ 91 (294)
T ss_dssp CSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-----SCEEEEECCTTCHHHHH
T ss_pred CCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcC-----CceEEEEecccChHHHH
Confidence 3445689999999999999999999999999999999999999999999999887643 47889999999999999
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhc-CCCCeEEEEcCCccccCCC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR-GSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~-~~~g~Iv~isS~~~~~~~~ 215 (298)
++++.+.+++|++|+||||||.....++.+.+.+++++.+.+|+.+.+.+++...+.+.. +..+.+++++|..+..+.
T Consensus 92 ~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~- 170 (294)
T d1w6ua_ 92 NTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGS- 170 (294)
T ss_dssp HHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCC-
T ss_pred HHhhhhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhcc-
Confidence 999999999999999999999998888999999999999999999999999988877765 456678888887755554
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc----hHHHHHHHHhhhhc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL----PKIVQAAYHLIPYF 291 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~----~~~~~~~~~~~p~~ 291 (298)
+...+|+++|+|+.+|+++|+.|+ .++|||||+|+||+|+|++.... .+..+.....+|++
T Consensus 171 --------------~~~~~YsasKaal~~ltk~lA~el-a~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~pl~ 235 (294)
T d1w6ua_ 171 --------------GFVVPSASAKAGVEAMSKSLAAEW-GKYGMRFNVIQPGPIKTKGAFSRLDPTGTFEKEMIGRIPCG 235 (294)
T ss_dssp --------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCC------CCTTSHHHHHHHTTCTTS
T ss_pred --------------cccchHHHHHHHHHHHHHHHHHHH-hHhCeEEEEEccCccccchhhhccCCcHHHHHHHhhcCCCC
Confidence 778889999999999999999999 88999999999999999997543 45567777799999
Q ss_pred cc-CCCC
Q 022369 292 IF-NPQE 297 (298)
Q Consensus 292 ~~-~pe~ 297 (298)
|+ +|||
T Consensus 236 R~~~ped 242 (294)
T d1w6ua_ 236 RLGTVEE 242 (294)
T ss_dssp SCBCHHH
T ss_pred CCCCHHH
Confidence 99 8875
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=100.00 E-value=8.7e-43 Score=301.12 Aligned_cols=187 Identities=19% Similarity=0.294 Sum_probs=166.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCC-CHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLL-SLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s-~~~~v~~~~~ 140 (298)
+++||+||||||++|||+++|++|+++|++|++++|+.++.+++. ++....+ +.++.++.+|++ +.++++++++
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~-~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~ 76 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA-ELKAINP----KVNITFHTYDVTVPVAESKKLLK 76 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHH-HHHHHCT----TSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHH-HHHhhCC----CCCEEEEEeecCCCHHHHHHHHH
Confidence 689999999999999999999999999999999999888766554 4443322 248999999998 6788999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC---CCeEEEEcCCccccCCCCc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS---PSRIINVNSVMHYVGFVDT 217 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~---~g~Iv~isS~~~~~~~~~~ 217 (298)
++.+++|+||+||||||.. +.+.|++++++|++|+++++++++|.|.+++ .|+|||+||.+++.+.
T Consensus 77 ~~~~~~g~iDilvnnAG~~--------~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~--- 145 (254)
T d1sbya1 77 KIFDQLKTVDILINGAGIL--------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAI--- 145 (254)
T ss_dssp HHHHHHSCCCEEEECCCCC--------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCC---
T ss_pred HHHHHcCCCCEEEeCCCCC--------CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCC---
Confidence 9999999999999999963 4688999999999999999999999998753 5899999999876665
Q ss_pred ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 218 EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
+.+..|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|+|.+..
T Consensus 146 ------------~~~~~Y~asKaal~~~t~~la~el-~~~gIrVn~I~PG~v~T~~~~~~ 192 (254)
T d1sbya1 146 ------------HQVPVYSASKAAVVSFTNSLAKLA-PITGVTAYSINPGITRTPLVHTF 192 (254)
T ss_dssp ------------TTSHHHHHHHHHHHHHHHHHHHHH-HHHSEEEEEEEECSEESHHHHSC
T ss_pred ------------CCCHHHHHHHHHHHHHHHHHHhhc-cccCeEEEEEEeCCCcCcccccc
Confidence 888899999999999999999999 88999999999999999986543
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.1e-43 Score=301.69 Aligned_cols=206 Identities=24% Similarity=0.314 Sum_probs=179.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||++|||||++|||+++|+.|+++|++|++++|++++++++.++ ..+....+|+.+.+.++...+
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~-----------~~~~~~~~d~~~~~~~~~~~~- 70 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY-----------PGIQTRVLDVTKKKQIDQFAN- 70 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGS-----------TTEEEEECCTTCHHHHHHHHH-
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc-----------cCCceeeeecccccccccccc-
Confidence 58999999999999999999999999999999999998877665322 257788899998876665544
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccc
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMN 221 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~ 221 (298)
.++++|+||||||....+++.+++.++|++.+++|+.+++.++|.++|+|.+++.|+||+++|..+..
T Consensus 71 ---~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~--------- 138 (245)
T d2ag5a1 71 ---EVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSV--------- 138 (245)
T ss_dssp ---HCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTT---------
T ss_pred ---ccccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhcc---------
Confidence 56899999999999998899999999999999999999999999999999999999999999987532
Q ss_pred ccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch-------HHHHHHHHhhhhccc-
Q 022369 222 VVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP-------KIVQAAYHLIPYFIF- 293 (298)
Q Consensus 222 ~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~-------~~~~~~~~~~p~~~~- 293 (298)
.+++....|+++|+|+.+|+++|+.|+ +++|||||+|+||+|+|++.+... +..+.+...+|++|+
T Consensus 139 -----~~~~~~~~Y~~sKaal~~l~r~lA~e~-~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~~~~~pl~R~~ 212 (245)
T d2ag5a1 139 -----KGVVNRCVYSTTKAAVIGLTKSVAADF-IQQGIRCNCVCPGTVDTPSLQERIQARGNPEEARNDFLKRQKTGRFA 212 (245)
T ss_dssp -----BCCTTBHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESCEECHHHHHHHHHSSSHHHHHHHHHHTCTTSSCE
T ss_pred -----CCccchhHHHHHHHHHHHHHHHHHHHh-hhhCcEEEEEeeceeechhhHhhhhhhhhhHHHHHHHHhcCCCCCCc
Confidence 233788899999999999999999999 889999999999999999976532 234556678999998
Q ss_pred CCCC
Q 022369 294 NPQE 297 (298)
Q Consensus 294 ~pe~ 297 (298)
+|||
T Consensus 213 ~ped 216 (245)
T d2ag5a1 213 TAEE 216 (245)
T ss_dssp EHHH
T ss_pred CHHH
Confidence 8775
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-42 Score=303.75 Aligned_cols=204 Identities=25% Similarity=0.297 Sum_probs=172.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+++|||||++|||+++|++|+++ |++|++++|++++++++.+++++.. .++.+++||++|.++++++++++.+
T Consensus 4 rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dvs~~~sv~~~~~~~~~ 77 (275)
T d1wmaa1 4 HVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG------LSPRFHQLDIDDLQSIRALRDFLRK 77 (275)
T ss_dssp CEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT------CCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred eEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEEecCCHHHHHHHHHHHHH
Confidence 46799999999999999999986 8999999999999999999998742 3688999999999999999999999
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc----
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM---- 220 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~---- 220 (298)
++|+||+||||||+....+..+.+.++|++.|++|++|++++++.++|+|++ +|+|||+||..+..+.......
T Consensus 78 ~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~--~g~ivnisS~~~~~~~~~~~~y~~~k 155 (275)
T d1wmaa1 78 EYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKP--QGRVVNVSSIMSVRALKSCSPELQQK 155 (275)
T ss_dssp HHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEECCHHHHHHHHTSCHHHHHH
T ss_pred hcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcccccccceeccccccchhhhhh
Confidence 9999999999999988888888899999999999999999999999999975 4899999998876543221100
Q ss_pred ----------------------cccccccCCCCcccchhhHHHHHHHHHHHHHHcC---CCCCcEEEEeeCCccccCccC
Q 022369 221 ----------------------NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLP---AESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ----------------------~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~---~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.......+..+...|++||+++.+|++.+++|+. ...||+||+|+||+|+|+|.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~vn~v~PG~v~T~m~~ 235 (275)
T d1wmaa1 156 FRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNACCPGWVRTDMAG 235 (275)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEEECCSBCSTTTC
T ss_pred hcccccchhhhccccccchhcccccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccCCccc
Confidence 0000112223456799999999999999998883 346999999999999999987
Q ss_pred Cc
Q 022369 276 DL 277 (298)
Q Consensus 276 ~~ 277 (298)
..
T Consensus 236 ~~ 237 (275)
T d1wmaa1 236 PK 237 (275)
T ss_dssp TT
T ss_pred Cc
Confidence 54
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-41 Score=295.04 Aligned_cols=192 Identities=25% Similarity=0.317 Sum_probs=177.8
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
++||+||||||++|||+++|++|+++|++|++++|++++++++.+++..... ..+..+.+|+++.+.+....+.+
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~ 86 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGA-----ASAHYIAGTMEDMTFAEQFVAQA 86 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-----SEEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhc-----ccchhhhhhhhhHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999988876543 47889999999999999999999
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.+.+|.+|++|||||.....++.+.+.++|++.+++|+.|++.+++.++|+|++ ++|+||++||.++..+.
T Consensus 87 ~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~-~~G~ii~isS~~~~~~~-------- 157 (269)
T d1xu9a_ 87 GKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQ-SNGSIVVVSSLAGKVAY-------- 157 (269)
T ss_dssp HHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HTCEEEEEEEGGGTSCC--------
T ss_pred HHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHh-cCCcceEeccchhcCCC--------
Confidence 999999999999999988888999999999999999999999999999999975 45999999999866665
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcC-CCCCcEEEEeeCCccccCccC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLP-AESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~-~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
|....|++||+|+.+|+++|+.|++ .+.||+||+|+||+|+|+|.+
T Consensus 158 -------p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~T~~~~ 204 (269)
T d1xu9a_ 158 -------PMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTETAM 204 (269)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHHHH
T ss_pred -------CCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCCCcHHH
Confidence 8889999999999999999999983 256899999999999999864
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.7e-42 Score=295.19 Aligned_cols=212 Identities=25% Similarity=0.337 Sum_probs=181.5
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++||+||||||++|||+++|++|+++|++|++++|+.+++++..+++.. ......+|+.+.+.+++...
T Consensus 1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~ 71 (248)
T d2o23a1 1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGN---------NCVFAPADVTSEKDVQTALA 71 (248)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCT---------TEEEEECCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC---------Cccccccccccccccccccc
Confidence 468999999999999999999999999999999999999999988877633 68889999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCC------CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC------CCCeEEEEcCC
Q 022369 141 AWNGRLGPLHVLINNAGIFSI------GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG------SPSRIINVNSV 208 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~------~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~------~~g~Iv~isS~ 208 (298)
++...++.+|.+++|+++... .++.+.+.++|++.+++|+.++++++|+++|+|..+ ++|+|||+||.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~ 151 (248)
T d2o23a1 72 LAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASV 151 (248)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCT
T ss_pred ccccccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecch
Confidence 999999999999999887543 345677889999999999999999999999998653 57899999999
Q ss_pred ccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHH-HHHHHh
Q 022369 209 MHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIV-QAAYHL 287 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~-~~~~~~ 287 (298)
.+..+. +++.+|++||+|+.+|+++|+.|+ .++|||||+|+||+++|+|....++.. +.....
T Consensus 152 ~~~~~~---------------~~~~~Y~asKaal~~lt~~la~e~-~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~ 215 (248)
T d2o23a1 152 AAFEGQ---------------VGQAAYSASKGGIVGMTLPIARDL-APIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQ 215 (248)
T ss_dssp HHHHCC---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECCBCCC----------CHHHHT
T ss_pred hhccCC---------------CCchHHHHHHHHHHHHHHHHHHHh-cccCcceeeeccCceecchhhcCCHHHHHHHHhc
Confidence 876665 888999999999999999999999 889999999999999999998876544 445567
Q ss_pred hhh-ccc-CCCC
Q 022369 288 IPY-FIF-NPQE 297 (298)
Q Consensus 288 ~p~-~~~-~pe~ 297 (298)
+|+ +|+ +|||
T Consensus 216 ~pl~~R~g~pee 227 (248)
T d2o23a1 216 VPFPSRLGDPAE 227 (248)
T ss_dssp CSSSCSCBCHHH
T ss_pred CCCCCCCcCHHH
Confidence 886 777 8875
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=100.00 E-value=1.3e-41 Score=292.90 Aligned_cols=192 Identities=25% Similarity=0.343 Sum_probs=168.2
Q ss_pred CEEEEeCCCCchHHHHHHHHH---HcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLA---ESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la---~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
|+||||||++|||+++|++|+ ++|++|++++|++++++++.+.... +.++.+++||++|+++++++++++
T Consensus 3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~-------~~~~~~~~~Dvs~~~~v~~~~~~i 75 (248)
T d1snya_ 3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKN-------HSNIHILEIDLRNFDAYDKLVADI 75 (248)
T ss_dssp SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHH-------CTTEEEEECCTTCGGGHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhc-------CCcEEEEEEEeccHHHHHHHHhhh
Confidence 799999999999999999996 5799999999999998877543332 137999999999999999999998
Q ss_pred hc--ccCCccEEEEccCCCCC-CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-----------CCCeEEEEcCC
Q 022369 143 NG--RLGPLHVLINNAGIFSI-GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-----------SPSRIINVNSV 208 (298)
Q Consensus 143 ~~--~~g~idilVnnag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-----------~~g~Iv~isS~ 208 (298)
++ ++++||+||||||+... .++.+.+.++|++++++|+.|++.+++.++|+|+++ ++|+|||++|.
T Consensus 76 ~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~ 155 (248)
T d1snya_ 76 EGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSI 155 (248)
T ss_dssp HHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCG
T ss_pred HHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccccccccccccccc
Confidence 54 67899999999998654 457789999999999999999999999999999864 46899999998
Q ss_pred ccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 209 MHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
++.... .+.++..+|++||+|+.+|+++|+.|+ .++||+||+|+||+|+|+|.+..
T Consensus 156 ~g~~~~------------~~~~~~~~Y~aSKaal~~lt~~la~e~-~~~gI~vn~v~PG~v~T~m~~~~ 211 (248)
T d1snya_ 156 LGSIQG------------NTDGGMYAYRTSKSALNAATKSLSVDL-YPQRIMCVSLHPGWVKTDMGGSS 211 (248)
T ss_dssp GGCSTT------------CCSCCCHHHHHHHHHHHHHHHHHHHHH-GGGTCEEEEECCCSBCSTTTCTT
T ss_pred ccccCC------------CCCCChHHHHHHHHHHHHHHHHHHHHh-CCCCeEEEEcCCCcccCCccccc
Confidence 876542 233677889999999999999999999 88999999999999999998764
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=8.2e-41 Score=288.31 Aligned_cols=196 Identities=26% Similarity=0.346 Sum_probs=161.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
..|+||||||++|||+++|++|+++|+ +|++++|+.++++++.+. .+.++.++++|++|++++++++++
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~---------~~~~~~~~~~Dvs~~~~v~~~~~~ 72 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI---------KDSRVHVLPLTVTCDKSLDTFVSK 72 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC---------CCTTEEEEECCTTCHHHHHHHHHH
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh---------hCCceEEEEEecCCHHHHHHHHHH
Confidence 459999999999999999999999996 799999999988765322 124799999999999999999999
Q ss_pred HhcccCC--ccEEEEccCCCC-CCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-----------CCCeEEEEcC
Q 022369 142 WNGRLGP--LHVLINNAGIFS-IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-----------SPSRIINVNS 207 (298)
Q Consensus 142 ~~~~~g~--idilVnnag~~~-~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-----------~~g~Iv~isS 207 (298)
+.+.++. ||+||||||+.. ..++.+.+.++|++.+++|+.|++++++.++|+|+++ ..++++++++
T Consensus 73 i~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~ 152 (250)
T d1yo6a1 73 VGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISS 152 (250)
T ss_dssp HHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECC
T ss_pred HHHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceecccccccc
Confidence 9988764 999999999865 4677889999999999999999999999999999864 2478999998
Q ss_pred CccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc
Q 022369 208 VMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL 277 (298)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~ 277 (298)
..+...... ...+..+..+|++||+|+.+|+++|+.|+ +++||+||+|+||+|+|+|....
T Consensus 153 ~~~~~~~~~--------~~~~~~~~~aY~aSKaal~~l~~~la~el-~~~gI~v~~i~PG~v~T~m~~~~ 213 (250)
T d1yo6a1 153 GLGSITDNT--------SGSAQFPVLAYRMSKAAINMFGRTLAVDL-KDDNVLVVNFCPGWVQTNLGGKN 213 (250)
T ss_dssp GGGCSTTCC--------STTSSSCBHHHHHHHHHHHHHHHHHHHHT-GGGTCEEEEEECCCC--------
T ss_pred ccccccCCc--------ccccchhHHHHHHHHHHHHHHHHHHHHHh-cccCeEEEEEecCCCCCCCCCCC
Confidence 776554321 22233455679999999999999999999 88999999999999999998653
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=100.00 E-value=2.5e-37 Score=270.72 Aligned_cols=215 Identities=22% Similarity=0.223 Sum_probs=167.6
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC-chHHHHHHHHHHHhhcCCC------------CCccEEEEEcCCCCH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRN-LKAANELIQKWQEEWSGKG------------LPLNIEAMELDLLSL 132 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~-~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~D~s~~ 132 (298)
.+||||||++|||+++|++|+++|++|++++|+ .+.++++.+++.+..+... ....+....+|++++
T Consensus 3 pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~ 82 (284)
T d1e7wa_ 3 PVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLF 82 (284)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCCH
Confidence 489999999999999999999999999998764 5667888888877643210 012334456779999
Q ss_pred HHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHH--------------HHHhhhchHHHHHHHHHhhhh----
Q 022369 133 DSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYE--------------EHMQVNHLAPALLSILLFPSL---- 194 (298)
Q Consensus 133 ~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~--------------~~~~vN~~~~~~l~~~~lp~m---- 194 (298)
++++++++++.+++|+||+||||||+....++.+.+.++|+ .++++|+.++++++|.+.+.+
T Consensus 83 ~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~ 162 (284)
T d1e7wa_ 83 TRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTP 162 (284)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhhH
Confidence 99999999999999999999999999888888777766665 478999999999999987764
Q ss_pred --hcCCCCeEEEEcCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 195 --IRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 195 --~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
.+.+.++||+++|..+..+. ++..+|++||+|+.+|+++|+.|+ +++|||||+|+||++.+.
T Consensus 163 ~~~~~~~~~ii~~~s~~~~~~~---------------~~~~~Y~asKaal~~lt~~lA~el-~~~gIrvN~I~PG~t~~~ 226 (284)
T d1e7wa_ 163 AKHRGTNYSIINMVDAMTNQPL---------------LGYTIYTMAKGALEGLTRSAALEL-APLQIRVNGVGPGLSVLV 226 (284)
T ss_dssp GGGSCSCEEEEEECCTTTTSCC---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBCCG
T ss_pred HHhcCCCCcccccccccccCCc---------------cceeeeccccccchhhhHHHHHHh-CCcccccccccccccccc
Confidence 44567899999998755554 788899999999999999999999 889999999999986544
Q ss_pred ccCCchHHHHHHHHhhhh-ccc-CCCC
Q 022369 273 VARDLPKIVQAAYHLIPY-FIF-NPQE 297 (298)
Q Consensus 273 ~~~~~~~~~~~~~~~~p~-~~~-~pe~ 297 (298)
.. ..++..+.....+|+ +|+ +|||
T Consensus 227 ~~-~~~~~~~~~~~~~pl~~R~~~pee 252 (284)
T d1e7wa_ 227 DD-MPPAVWEGHRSKVPLYQRDSSAAE 252 (284)
T ss_dssp GG-SCHHHHHHHHTTCTTTTSCBCHHH
T ss_pred cc-CCHHHHHHHHhcCCCCCCCCCHHH
Confidence 32 223455666667886 777 7775
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.8e-37 Score=264.20 Aligned_cols=211 Identities=12% Similarity=0.128 Sum_probs=178.6
Q ss_pred CCCCCEEEEeCCCC--chHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTS--GIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~--GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++||++|||||++ |||+++|+.|+++|++|++++|+++..+.+. ++.... .....+.+|+++..++.+.+
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~ 74 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVE-EFAAQL------GSDIVLQCDVAEDASIDTMF 74 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHH-HHHHHT------TCCCEEECCTTCHHHHHHHH
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HHHhhc------CCcceeecccchHHHHHHHH
Confidence 36899999999998 8999999999999999999999966555543 433321 25678899999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCCC-----CccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEP-----QKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~-----~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~ 214 (298)
+++.+.++++|++||||+......+ .....+.|...+++|+.+.+.+++.+.|.|.+ ++.||++||..+..+.
T Consensus 75 ~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Ii~iss~~~~~~~ 152 (258)
T d1qsga_ 75 AELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNP--GSALLTLSYLGAERAI 152 (258)
T ss_dssp HHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEEECGGGTSBC
T ss_pred HHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccC--CcEEEEecchhhccCC
Confidence 9999999999999999998654332 35677779999999999999999999999865 4589999998755444
Q ss_pred CCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhhc
Q 022369 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPYF 291 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~~ 291 (298)
|.+..|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|++.+... +..+.....+|++
T Consensus 153 ---------------~~~~~Y~~sKaal~~ltr~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~pl~ 216 (258)
T d1qsga_ 153 ---------------PNYNVMGLAKASLEANVRYMANAM-GPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIR 216 (258)
T ss_dssp ---------------TTTTHHHHHHHHHHHHHHHHHHHH-TTTTEEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTS
T ss_pred ---------------CCcHHHHHHHHHHHHHHHHHHHHh-CccCceeecccccccccccccccchhhhHHHHHHhCCCCC
Confidence 888899999999999999999999 889999999999999999988652 3345566689999
Q ss_pred cc-CCCC
Q 022369 292 IF-NPQE 297 (298)
Q Consensus 292 ~~-~pe~ 297 (298)
|+ +|||
T Consensus 217 R~~~pee 223 (258)
T d1qsga_ 217 RTVTIED 223 (258)
T ss_dssp SCCCHHH
T ss_pred CCcCHHH
Confidence 99 8875
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=100.00 E-value=2e-37 Score=277.26 Aligned_cols=194 Identities=15% Similarity=0.206 Sum_probs=157.0
Q ss_pred CCCEEEEeC--CCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCC-----C-CCccEEEEEc--------
Q 022369 64 NDLTCIVTG--STSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGK-----G-LPLNIEAMEL-------- 127 (298)
Q Consensus 64 ~~k~vlITG--as~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~-------- 127 (298)
++|++|||| +++|||+++|++|+++|++|++++++............+..... . .........+
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence 479999999 55899999999999999999999998776665544332221100 0 0011223333
Q ss_pred ------------CCCCHHHHHHHHHHHhcccCCccEEEEccCCCC--CCCCCccChhhHHHHHhhhchHHHHHHHHHhhh
Q 022369 128 ------------DLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPS 193 (298)
Q Consensus 128 ------------D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~ 193 (298)
|+++.++++++++++.+.+|+||+||||||... .+++.+.+.++|++.+++|+++.+.++|+++|+
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~ 160 (329)
T d1uh5a_ 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence 666888899999999999999999999999765 357889999999999999999999999999999
Q ss_pred hhcCCCCeEEEEcCCccccCCCCcccccccccccCCCC-cccchhhHHHHHHHHHHHHHHcCCC-CCcEEEEeeCCcccc
Q 022369 194 LIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTS-LMGYSGSKLAQIKFSSILQKRLPAE-SGINVVCVSPGIVST 271 (298)
Q Consensus 194 m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~-~~~Y~asKaa~~~l~~~l~~e~~~~-~gI~v~~v~Pg~v~T 271 (298)
|++ +|+||++||.++..+. |. ...|+++|+|+++|+++|+.|+ .+ +|||||+|+||+|+|
T Consensus 161 m~~--~GsIv~iss~~~~~~~---------------p~y~~~y~asKaal~~ltr~lA~El-a~~~gIRVNaI~PG~i~T 222 (329)
T d1uh5a_ 161 MKP--QSSIISLTYHASQKVV---------------PGYGGGMSSAKAALESDTRVLAYHL-GRNYNIRINTISAGPLKS 222 (329)
T ss_dssp EEE--EEEEEEEECGGGTSCC---------------TTCTTTHHHHHHHHHHHHHHHHHHH-HHHHCCEEEEEEECCCCC
T ss_pred ccc--ccccccceeehhcccc---------------cccchhhhhhhccccccchhhHHHH-hcccCcEEEEEecCcccc
Confidence 965 5899999998766554 54 4579999999999999999999 64 699999999999999
Q ss_pred CccC
Q 022369 272 NVAR 275 (298)
Q Consensus 272 ~~~~ 275 (298)
++.+
T Consensus 223 ~a~~ 226 (329)
T d1uh5a_ 223 RAAT 226 (329)
T ss_dssp TTGG
T ss_pred hhhh
Confidence 6443
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=100.00 E-value=1.1e-36 Score=260.13 Aligned_cols=179 Identities=13% Similarity=0.100 Sum_probs=154.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+||++|||||++|||+++|++|+++|++|++++++..+. ......+.+|.++.++++.+.+.+.
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE----------------ASASVIVKMTDSFTEQADQVTAEVG 64 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT----------------SSEEEECCCCSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc----------------ccccceeecccCcHHHHHHHHHHHH
Confidence 589999999999999999999999999999999875421 1255677889999999988888887
Q ss_pred cccC--CccEEEEccCCCCC-CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 144 GRLG--PLHVLINNAGIFSI-GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 144 ~~~g--~idilVnnag~~~~-~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.++ +||+||||||.... .+..+.+.++|++.+++|+.++++++++++|+|++ +|+|||+||.++..+.
T Consensus 65 ~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~--~G~Iv~isS~~~~~~~------ 136 (236)
T d1dhra_ 65 KLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKE--GGLLTLAGAKAALDGT------ 136 (236)
T ss_dssp HHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEEEEEECCGGGGSCC------
T ss_pred HHhCCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhccc--ccceeEEccHHHcCCc------
Confidence 7654 69999999997544 45567778999999999999999999999999965 5899999999866655
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCC-CCCcEEEEeeCCccccCccC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPA-ESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~-~~gI~v~~v~Pg~v~T~~~~ 275 (298)
+...+|++||+|+.+|+++|+.|++. ++|||||+|+||+|+|+|.+
T Consensus 137 ---------~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~~~ 183 (236)
T d1dhra_ 137 ---------PGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPMNR 183 (236)
T ss_dssp ---------TTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHHHH
T ss_pred ---------cCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCcch
Confidence 88899999999999999999999932 58999999999999999864
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=100.00 E-value=8.4e-36 Score=262.67 Aligned_cols=221 Identities=16% Similarity=0.158 Sum_probs=169.7
Q ss_pred CCCCCCEEEEeCCCC--chHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCC-----CCCc-cEEEEEcC----
Q 022369 61 PPVNDLTCIVTGSTS--GIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGK-----GLPL-NIEAMELD---- 128 (298)
Q Consensus 61 ~~~~~k~vlITGas~--GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~D---- 128 (298)
.+++||++|||||++ |||+++|++|+++|++|++++|+.+................ +... .-....+|
T Consensus 4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (297)
T d1d7oa_ 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFD 83 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCC
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhcc
Confidence 478999999999875 99999999999999999999998654443332221111000 0000 11223333
Q ss_pred ----------------CCCHHHHHHHHHHHhcccCCccEEEEccCCCC--CCCCCccChhhHHHHHhhhchHHHHHHHHH
Q 022369 129 ----------------LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFS--IGEPQKFSKDGYEEHMQVNHLAPALLSILL 190 (298)
Q Consensus 129 ----------------~s~~~~v~~~~~~~~~~~g~idilVnnag~~~--~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~ 190 (298)
.++..+++++++++.++||+||+||||||... ..++.+.+.++|++.+++|+.+++.+++++
T Consensus 84 ~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~ 163 (297)
T d1d7oa_ 84 NPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHF 163 (297)
T ss_dssp SGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHH
Confidence 24556678999999999999999999999864 467889999999999999999999999999
Q ss_pred hhhhhcCCCCeEEEEcCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccc
Q 022369 191 FPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVS 270 (298)
Q Consensus 191 lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~ 270 (298)
+|.|.++ |+++++++..+... ..+....|+++|+++.++++.++.|+..++|||||+|+||+|+
T Consensus 164 ~~~~~~~--g~~~~~~~~~~~~~--------------~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~gIrvN~I~PG~i~ 227 (297)
T d1d7oa_ 164 LPIMNPG--GASISLTYIASERI--------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQNIRVNTISAGPLG 227 (297)
T ss_dssp GGGEEEE--EEEEEEECGGGTSC--------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCB
T ss_pred HHHhhcC--Ccceeeeehhhccc--------------ccccccceecccccccccccccchhccccceEEeccccccccc
Confidence 9998774 46666666543322 2256678999999999999999999933579999999999999
Q ss_pred cCccCCc---hHHHHHHHHhhhhccc-CCCC
Q 022369 271 TNVARDL---PKIVQAAYHLIPYFIF-NPQE 297 (298)
Q Consensus 271 T~~~~~~---~~~~~~~~~~~p~~~~-~pe~ 297 (298)
|++.+.. ++..+.....+|++|+ +|||
T Consensus 228 T~~~~~~~~~~~~~~~~~~~~PlgR~~~pee 258 (297)
T d1d7oa_ 228 SRAAKAIGFIDTMIEYSYNNAPIQKTLTADE 258 (297)
T ss_dssp CCCSSCCSHHHHHHHHHHHHSSSCCCBCHHH
T ss_pred chhhhhccCCHHHHHHHHhCCCCCCCCCHHH
Confidence 9999865 3445566678999998 8875
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=9.3e-36 Score=254.54 Aligned_cols=198 Identities=25% Similarity=0.336 Sum_probs=166.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|+||||||++|||+++|++|+++|++|++++|+++. .+....++|+++...+..+......
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~------------------~~~~~~~~d~~~~~~~~~~~~~~~~ 62 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG------------------EDLIYVEGDVTREEDVRRAVARAQE 62 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS------------------SSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc------------------ccceEeeccccchhhhHHHHHhhhc
Confidence 4899999999999999999999999999999998642 2567889999999999999888877
Q ss_pred ccCCccEEEEccCCCC----CCCCCccChhhHHHHHhhhchHHHHHHHHHhhh------hhcCCCCeEEEEcCCccccCC
Q 022369 145 RLGPLHVLINNAGIFS----IGEPQKFSKDGYEEHMQVNHLAPALLSILLFPS------LIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 145 ~~g~idilVnnag~~~----~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~------m~~~~~g~Iv~isS~~~~~~~ 214 (298)
.. ..+.++++++... .......+.+.|++.+++|+.+++.+++.+++. |.+++.|+|||+||..+..+.
T Consensus 63 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~ 141 (241)
T d1uaya_ 63 EA-PLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQ 141 (241)
T ss_dssp HS-CEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCC
T ss_pred cc-cccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCC
Confidence 65 4555666665433 234556788999999999999999999999998 566778999999999876665
Q ss_pred CCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH-HHHHHHHhhhh-cc
Q 022369 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK-IVQAAYHLIPY-FI 292 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~-~~~~~~~~~p~-~~ 292 (298)
++...|+++|+|+.+|+++|+.|+ .++|||||+|+||+|+|++.+...+ ..+......|+ +|
T Consensus 142 ---------------~~~~~Y~asKaal~~lt~~lA~el-a~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~~~~R 205 (241)
T d1uaya_ 142 ---------------IGQAAYAASKGGVVALTLPAAREL-AGWGIRVVTVAPGLFDTPLLQGLPEKAKASLAAQVPFPPR 205 (241)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEECSCSSHHHHTSCHHHHHHHHTTCCSSCS
T ss_pred ---------------CCchhhHHHHHHHHHHHHHHHHHH-hhcCCceeeecCCcccccccchhhhhHHHHHHhcCCCCCC
Confidence 888999999999999999999999 8899999999999999999877644 34445556665 67
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 206 ~g~ped 211 (241)
T d1uaya_ 206 LGRPEE 211 (241)
T ss_dssp CCCHHH
T ss_pred CcCHHH
Confidence 7 7775
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.2e-35 Score=253.34 Aligned_cols=178 Identities=15% Similarity=0.084 Sum_probs=151.4
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc-
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG- 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~- 144 (298)
+.||||||++|||+++|++|+++|++|++++|++++.. .....+.+|+.+.+......+.+..
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA----------------DSNILVDGNKNWTEQEQSILEQTASS 66 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS----------------SEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc----------------cccceeccccCchhHHHHHHHHHHHH
Confidence 45799999999999999999999999999999865311 2455667899888888877777766
Q ss_pred -ccCCccEEEEccCCCCCC-CCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 145 -RLGPLHVLINNAGIFSIG-EPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 145 -~~g~idilVnnag~~~~~-~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.+|+||+||||||+.... +..+.+.+.|+..+++|+.++++++|.++|+|++ +|+|||+||..+..+.
T Consensus 67 ~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~--~g~Iv~isS~~~~~~~-------- 136 (235)
T d1ooea_ 67 LQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKP--GGLLQLTGAAAAMGPT-------- 136 (235)
T ss_dssp HTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEE--EEEEEEECCGGGGSCC--------
T ss_pred hcCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhccccccc--ceEEEEeccHHhcCCc--------
Confidence 458999999999986543 4555567889999999999999999999999976 4899999998866554
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCC-CCCcEEEEeeCCccccCccCC
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPA-ESGINVVCVSPGIVSTNVARD 276 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~-~~gI~v~~v~Pg~v~T~~~~~ 276 (298)
++..+|++||+|+.+|+++|+.|++. +.||+||+|+||+++|+|.+.
T Consensus 137 -------~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~~~~~ 184 (235)
T d1ooea_ 137 -------PSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPMNRK 184 (235)
T ss_dssp -------TTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHHHHH
T ss_pred -------ccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCcchhh
Confidence 88899999999999999999999942 579999999999999998653
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=100.00 E-value=2.9e-34 Score=248.66 Aligned_cols=210 Identities=20% Similarity=0.192 Sum_probs=169.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH-HHHHHHHHHHhhcCCCCCccEEEEEcCCC----CHHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA-ANELIQKWQEEWSGKGLPLNIEAMELDLL----SLDSVVRFSE 140 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~s----~~~~v~~~~~ 140 (298)
.++|||||++|||+++|++|+++|++|++++|+.++ .+++.+++.+... .+....++|+. .++.++++++
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA-----GSAVLCKGDLSLSSSLLDCCEDIID 76 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST-----TCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcC-----CceEEEecccccchhHHHHHHHHHH
Confidence 489999999999999999999999999999998665 5677778777543 35666665554 4677888999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCC-----------ccChhhHHHHHhhhchHHHHHHHHHhhhhhc-----CCCCeEEE
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQ-----------KFSKDGYEEHMQVNHLAPALLSILLFPSLIR-----GSPSRIIN 204 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~-----------~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~-----~~~g~Iv~ 204 (298)
++.+++|+||+||||||+....++. +...+.+...+..|+.+.+...+...+.+.. ...+.+++
T Consensus 77 ~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (266)
T d1mxha_ 77 CSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVN 156 (266)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEE
T ss_pred HHHHHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchh
Confidence 9999999999999999987655432 2345567788999999999999999888865 34568888
Q ss_pred EcCCccccCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchHHHHHH
Q 022369 205 VNSVMHYVGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPKIVQAA 284 (298)
Q Consensus 205 isS~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~~~~~~ 284 (298)
+++..+..+. |++..|++||+|+.+|+++|+.|+ .++|||||+|+||+++|++... .+..+.+
T Consensus 157 ~~~~~~~~~~---------------~~~~~Y~asKaal~~lt~~lA~e~-~~~gIrVN~I~PG~i~t~~~~~-~~~~~~~ 219 (266)
T d1mxha_ 157 LCDAMTDLPL---------------PGFCVYTMAKHALGGLTRAAALEL-APRHIRVNAVAPGLSLLPPAMP-QETQEEY 219 (266)
T ss_dssp ECCGGGGSCC---------------TTCHHHHHHHHHHHHHHHHHHHHH-GGGTEEEEEEEESSBSCCSSSC-HHHHHHH
T ss_pred hhhccccccC---------------cchhhhhhhHHHHhhhHHHHHHHh-CccCcEEEEeccCcEeccccCC-HHHHHHH
Confidence 8887654444 889999999999999999999999 8899999999999999997543 3455666
Q ss_pred HHhhhhccc--CCCC
Q 022369 285 YHLIPYFIF--NPQE 297 (298)
Q Consensus 285 ~~~~p~~~~--~pe~ 297 (298)
...+|+.+. +|||
T Consensus 220 ~~~~pl~r~~~~pee 234 (266)
T d1mxha_ 220 RRKVPLGQSEASAAQ 234 (266)
T ss_dssp HTTCTTTSCCBCHHH
T ss_pred HhcCCCCCCCCCHHH
Confidence 778898654 7875
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=100.00 E-value=6.2e-34 Score=247.95 Aligned_cols=211 Identities=16% Similarity=0.128 Sum_probs=162.2
Q ss_pred CCCCCEEEEeCCCC--chHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTS--GIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~--GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++||++|||||+| |||+++|++|+++|++|++++|+++ +++.++++.+.. ....++.+|+++++++++++
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~~~------~~~~~~~~d~~~~~~~~~~~ 74 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQEL------NSPYVYELDVSKEEHFKSLY 74 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHT------TCCCEEECCTTCHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHhhC------CceeEeeecccchhhHHHHH
Confidence 37899999999764 9999999999999999999999954 444556665543 25667899999999999999
Q ss_pred HHHhcccCCccEEEEccCCCCCCC----CCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGE----PQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFV 215 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~----~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~ 215 (298)
+++.+.+|.+|++|||+|...... ..+...+.+...+.++..+.+.+.+...+.+.. .+.|+++|+.+...+
T Consensus 75 ~~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~s~~~~~~~-- 150 (274)
T d2pd4a1 75 NSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNN--GASVLTLSYLGSTKY-- 150 (274)
T ss_dssp HHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE--EEEEEEEECGGGTSB--
T ss_pred HHHHHHcCCCCeEEeecccccccccccccccccchhhhhhhcccccccccccccccccccc--Ccceeeecccccccc--
Confidence 999999999999999999865432 233444445555555666666666655554332 335666666543333
Q ss_pred CcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHHhhhhcc
Q 022369 216 DTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYHLIPYFI 292 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~~~p~~~ 292 (298)
.+....|+++|+|+.+|+++++.|+ .++|||||+|+||+++|++..... +..+......|++|
T Consensus 151 -------------~~~~~~y~asK~al~~ltr~lA~e~-~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~~p~~r 216 (274)
T d2pd4a1 151 -------------MAHYNVMGLAKAALESAVRYLAVDL-GKHHIRVNALSAGPIRTLASSGIADFRMILKWNEINAPLRK 216 (274)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHHSTTSS
T ss_pred -------------cccchhhhHHHHHHHHHHHhhHHHh-cCcCceecccccCcccCccccccCchHHHHHHHhhhhhccC
Confidence 3677889999999999999999999 899999999999999999987653 33444556888888
Q ss_pred c-CCCC
Q 022369 293 F-NPQE 297 (298)
Q Consensus 293 ~-~pe~ 297 (298)
+ +|||
T Consensus 217 ~~~ped 222 (274)
T d2pd4a1 217 NVSLEE 222 (274)
T ss_dssp CCCHHH
T ss_pred CcCHHH
Confidence 8 7765
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=100.00 E-value=2.3e-33 Score=243.37 Aligned_cols=209 Identities=13% Similarity=0.118 Sum_probs=165.2
Q ss_pred CCCCCEEEEeCC--CCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGS--TSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGa--s~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++||++||||| ++|||+++|++|+++|++|++++|+.+++.+ ++.+.. +.+...++||++++++++.++
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~---~~~~~~-----~~~~~~~~~dv~~~~~~~~~~ 74 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQ---RITDRL-----PAKAPLLELDVQNEEHLASLA 74 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHH---HHHTTS-----SSCCCEEECCTTCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHH---HHHHHc-----CCceeeEeeeccccccccccc
Confidence 378999999994 5799999999999999999999999876543 222222 246778899999999999999
Q ss_pred HHHhcc---cCCccEEEEccCCCCC-----CCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccc
Q 022369 140 EAWNGR---LGPLHVLINNAGIFSI-----GEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY 211 (298)
Q Consensus 140 ~~~~~~---~g~idilVnnag~~~~-----~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~ 211 (298)
+.+.+. ++.+|++|||+|+... .++.+.+.+++.+.+++|+.+.+...+...+.+.. +.+++++|....
T Consensus 75 ~~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~s~~~~ 151 (268)
T d2h7ma1 75 GRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNP---GGSIVGMDFDPS 151 (268)
T ss_dssp HHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEE---EEEEEEEECCCS
T ss_pred chhhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccc---cccccccccccc
Confidence 888765 4679999999997642 34567888999999999999999999998886643 344455554433
Q ss_pred cCCCCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCc-------------h
Q 022369 212 VGFVDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDL-------------P 278 (298)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~-------------~ 278 (298)
. ..|....|+++|+|+.+|+++++.|+ .++|||||+|+||+|+|++.+.+ .
T Consensus 152 ~---------------~~p~~~~y~~sK~a~~~ltr~lA~e~-~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~~~~ 215 (268)
T d2h7ma1 152 R---------------AMPAYNWMTVAKSALESVNRFVAREA-GKYGVRSNLVAAGPIRTLAMSAIVGGALGEEAGAQIQ 215 (268)
T ss_dssp S---------------CCTTTHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEEECCCCCHHHHHHHTTTTCHHHHHHHH
T ss_pred c---------------cCcccchhhccccchhhccccchhhh-hccCCcceEEecCCCCChhhhhhccchhhhhhccchH
Confidence 3 33788899999999999999999999 88999999999999999986432 1
Q ss_pred HHHHHHHHhhhhcc-c-CCCC
Q 022369 279 KIVQAAYHLIPYFI-F-NPQE 297 (298)
Q Consensus 279 ~~~~~~~~~~p~~~-~-~pe~ 297 (298)
...+......|+.+ + +|||
T Consensus 216 ~~~~~~~~~~pl~rr~~~p~d 236 (268)
T d2h7ma1 216 LLEEGWDQRAPIGWNMKDATP 236 (268)
T ss_dssp HHHHHHHHHCTTCCCTTCCHH
T ss_pred HHHHHHHhcCCCCCCCCCHHH
Confidence 22334445788876 5 7775
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.97 E-value=2.5e-31 Score=229.63 Aligned_cols=177 Identities=21% Similarity=0.256 Sum_probs=151.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc---hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL---KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|||||++|||+++|++|+++|+ +|++++|+. +..+++.+++++. +.++.++.||++|+++++++++
T Consensus 9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~------g~~v~~~~~Dv~d~~~~~~~~~ 82 (259)
T d2fr1a1 9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEAL------GARTTVAACDVTDRESVRELLG 82 (259)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHT------TCEEEEEECCTTCHHHHHHHHH
T ss_pred cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhc------cccccccccccchHHHHHHhhc
Confidence 47999999999999999999999999 799999975 4455666665542 3589999999999999999999
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
++.+. +++|.+|||+|+....++.+.+.++|+..+++|+.+++++.+.+ ...+.++||++||.++..+.
T Consensus 83 ~i~~~-~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~----~~~~~~~iv~~SS~a~~~g~------ 151 (259)
T d2fr1a1 83 GIGDD-VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELT----RELDLTAFVLFSSFASAFGA------ 151 (259)
T ss_dssp TSCTT-SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHH----TTSCCSEEEEEEEHHHHTCC------
T ss_pred ccccc-ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHh----hccCCceEeeecchhhccCC------
Confidence 87665 68999999999999999999999999999999999999988764 44567899999999987776
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
+++..|+++|+++++|++.++. .||++++|+||.+.++
T Consensus 152 ---------~~~~~YaAaka~l~~la~~~~~-----~Gi~v~~I~pg~~~~~ 189 (259)
T d2fr1a1 152 ---------PGLGGYAPGNAYLDGLAQQRRS-----DGLPATAVAWGTWAGS 189 (259)
T ss_dssp ---------TTCTTTHHHHHHHHHHHHHHHH-----TTCCCEEEEECCBC--
T ss_pred ---------cccHHHHHHHHhHHHHHHHHHh-----CCCCEEECCCCcccCC
Confidence 7888899999999988776654 4899999999998654
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.96 E-value=4.6e-30 Score=221.00 Aligned_cols=201 Identities=17% Similarity=0.176 Sum_probs=143.3
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|+||||||++|||+++|++|+++|++|++++|+.++ ..+|+.+.+..+....++..+
T Consensus 2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~-----------------------~~~d~~~~~~~~~~~~~~~~~ 58 (257)
T d1fjha_ 2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE-----------------------VIADLSTAEGRKQAIADVLAK 58 (257)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS-----------------------EECCTTSHHHHHHHHHHHHTT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH-----------------------HHHHhcCHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999997431 257999999988876666554
Q ss_pred c-CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCC-cccc---
Q 022369 146 L-GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVD-TEDM--- 220 (298)
Q Consensus 146 ~-g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~-~~~~--- 220 (298)
. +.+|++|||||+.. ..+.++...++|+.+...+.+..++.+.+...+.+.++.+......... .+..
T Consensus 59 ~~~~id~lv~~Ag~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (257)
T d1fjha_ 59 CSKGMDGLVLCAGLGP-------QTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALAL 131 (257)
T ss_dssp CTTCCSEEEECCCCCT-------TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHH
T ss_pred hCCCCcEEEEcCCCCC-------cHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhc
Confidence 4 57999999999754 2355788899999999999999999999888788888877543322110 0000
Q ss_pred ---------cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCch---HHHHHHHH-h
Q 022369 221 ---------NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLP---KIVQAAYH-L 287 (298)
Q Consensus 221 ---------~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~---~~~~~~~~-~ 287 (298)
.........++..+|++||+|+.+|+++|+.|+ .++|||||+|+||+|+|++.+... +..+...+ .
T Consensus 132 ~~g~~~~i~s~~~~~~~~~~~~~Y~asKaal~~ltr~lA~el-~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~~ 210 (257)
T d1fjha_ 132 EAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAW-GEAGVRLNTIAPGATETPLLQAGLQDPRYGESIAKFV 210 (257)
T ss_dssp HHTCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHH-HHTTCEEEEEEECC---------------------CC
T ss_pred cCCcEEEEeeehhccCCCcchHHHHHHhhhhhcccccccccc-ccccccccccccCCcCChhHHhhcCCHHHHHHHHhcC
Confidence 000001122345679999999999999999999 889999999999999999987642 22233333 4
Q ss_pred hhhccc-CCCC
Q 022369 288 IPYFIF-NPQE 297 (298)
Q Consensus 288 ~p~~~~-~pe~ 297 (298)
.|++|+ +|||
T Consensus 211 ~PlgR~g~p~e 221 (257)
T d1fjha_ 211 PPMGRRAEPSE 221 (257)
T ss_dssp CSTTSCCCTHH
T ss_pred CCCCCCcCHHH
Confidence 699999 8876
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.84 E-value=1.1e-22 Score=166.99 Aligned_cols=155 Identities=14% Similarity=0.095 Sum_probs=117.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+++||++|||||++|||+++|+.|+++|++|++++|+.++++++.+++.+.. .+.+..+|+++.+++++++
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~d~~~~~~~~~~~- 90 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRF-------KVNVTAAETADDASRAEAV- 90 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH-------TCCCEEEECCSHHHHHHHT-
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhcc-------chhhhhhhcccHHHHHHHh-
Confidence 47899999999999999999999999999999999999999999999987753 4557889999999887664
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+++|+||||||+. +..++.|+|++.+++|+.+.++....+.+.+.... .....+++...+...
T Consensus 91 ------~~iDilin~Ag~g----~~~~~~e~~~~~~~~nv~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~------ 153 (191)
T d1luaa1 91 ------KGAHFVFTAGAIG----LELLPQAAWQNESSIEIVADYNAQPPLGIGGIDAT-DKGKEYGGKRAFGAL------ 153 (191)
T ss_dssp ------TTCSEEEECCCTT----CCCBCHHHHHTCTTCCEEEECCCSSSCSBTTCCTT-CEEEEETTEEEECHH------
T ss_pred ------cCcCeeeecCccc----cccCCHHHHHhhhcceeehhHhhHHHHHHHhhhhc-cCcEEecceEEEecc------
Confidence 5799999999974 35678999999999999998887666555444322 122222222111110
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHH
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSI 248 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~ 248 (298)
. .+...|+++|+++..|+++
T Consensus 154 -------~-~g~~~y~~sk~a~~~l~~s 173 (191)
T d1luaa1 154 -------G-IGGLKLKLHRACIAKLFES 173 (191)
T ss_dssp -------H-HHHHHHHHHHHHHHHHTSC
T ss_pred -------C-cCcHHHHHHHHHHHHHHhc
Confidence 0 1234599999998877643
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1.7e-18 Score=155.07 Aligned_cols=185 Identities=15% Similarity=0.064 Sum_probs=135.0
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch-----HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK-----AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
|+||||||+|-||.+++++|+++|+.|+.++|... +++.+..+... ...++.++++|++|.++++++++
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~d~~~~~~~~~ 75 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHT------CNPKFHLHYGDLSDTSNLTRILR 75 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------------CCEEECCCCSSCHHHHHHHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhh------cCCCeEEEEeecCCHHHHHHHHh
Confidence 88999999999999999999999999999999543 23332222111 11479999999999999999998
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
.. ++|+++|+|+..... .+.++.+..+++|+.|+.++..++...-. ++..++|++||.+-+ +.. +.
T Consensus 76 ~~-----~~d~v~h~aa~~~~~----~~~~~~~~~~~~Nv~gt~nllea~~~~~~-~~~~r~i~~SS~~vY-G~~---~~ 141 (357)
T d1db3a_ 76 EV-----QPDEVYNLGAMSHVA----VSFESPEYTADVDAMGTLRLLEAIRFLGL-EKKTRFYQASTSELY-GLV---QE 141 (357)
T ss_dssp HH-----CCSEEEECCCCCTTT----TTTSCHHHHHHHHTHHHHHHHHHHHHTTC-TTTCEEEEEEEGGGG-TTC---CS
T ss_pred cc-----CCCEEEEeecccccc----hhhhCHHHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEEchhhh-CCC---CC
Confidence 75 799999999986532 23456677899999999999988755322 234589999997543 221 11
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
...++..+..+...|+.||.+.+.+++.+++.+ ++++..+.|+.|..|..
T Consensus 142 ~~~~E~~~~~P~~~Y~~sK~~~E~~~~~~~~~~----~l~~~ilR~~~vyGp~~ 191 (357)
T d1db3a_ 142 IPQKETTPFYPRSPYAVAKLYAYWITVNYRESY----GMYACNGILFNHESPRR 191 (357)
T ss_dssp SSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTS
T ss_pred CCcCCCCCCCCCChHHHHHHHHHHHHHHHHHHh----CCCEEEEEeccccCCCC
Confidence 122333444556789999999999999988776 68999999999988853
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=6.5e-17 Score=143.81 Aligned_cols=186 Identities=16% Similarity=0.094 Sum_probs=133.6
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH-HHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA-ANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
|++|||||+|-||.+++++|+++|++|+++++-... .+... ....... .++.++.+|++|.++++++++..
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~-~~~~~~~-----~~v~~~~~Dl~d~~~l~~~~~~~-- 73 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVA-RLEVLTK-----HHIPFYEVDLCDRKGLEKVFKEY-- 73 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHH-HHHHHHT-----SCCCEEECCTTCHHHHHHHHHHS--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHH-hHHhhcc-----cCCeEEEeecCCHHHHHHHHhcc--
Confidence 789999999999999999999999999999863221 11111 1111111 36889999999999999888753
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
++|++||+|+.... ....+.-+....+|+.|+.++.+++... +-.++|++||...+......++.....
T Consensus 74 ---~~d~VihlAa~~~~----~~~~~~~~~~~~~N~~~t~~ll~~~~~~----~i~~~i~~SS~~vyg~~~~~~~~~~~~ 142 (347)
T d1z45a2 74 ---KIDSVIHFAGLKAV----GESTQIPLRYYHNNILGTVVLLELMQQY----NVSKFVFSSSATVYGDATRFPNMIPIP 142 (347)
T ss_dssp ---CCCEEEECCSCCCH----HHHHHSHHHHHHHHHHHHHHHHHHHHHH----TCCEEEEEEEGGGGCCGGGSTTCCSBC
T ss_pred ---CCCEEEEccccccc----cccccCcccccccchhhhHHHHHHHHhc----ccceEEeecceeeecCcccCCCCCccc
Confidence 69999999997431 1233455678889999999999987543 334899999987665443333333333
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
...+..+...|+.||.+.+.+.+.+.... ..++++..+.|+.+..+
T Consensus 143 e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~~~~lR~~~v~g~ 188 (347)
T d1z45a2 143 EECPLGPTNPYGHTKYAIENILNDLYNSD--KKSWKFAILRYFNPIGA 188 (347)
T ss_dssp TTSCCCCCSHHHHHHHHHHHHHHHHHHHS--TTSCEEEEEEECEEECC
T ss_pred cccCCCCCChhHhHHHHHHHHHHHHHHhh--ccCCcEEEEeecceEee
Confidence 34445556789999999999998887664 35778887777666543
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=4.6e-16 Score=137.78 Aligned_cols=183 Identities=16% Similarity=0.050 Sum_probs=132.6
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
.+|||||+|-||..++++|+++|+.|++++|-....+.......... ..++.++++|++|.+.+.++++..
T Consensus 2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~l~~~~~~~---- 72 (338)
T d1udca_ 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLG-----GKHPTFVEGDIRNEALMTEILHDH---- 72 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHH-----TSCCEEEECCTTCHHHHHHHHHHT----
T ss_pred EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhc-----CCCCEEEEeecCCHHHHHHHHhcc----
Confidence 39999999999999999999999999999873222111111111111 137899999999999998888863
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
++|++||.|+... ...+.++.++.+++|+.|+.++++++... +-.++|++||.+.+........ ....
T Consensus 73 -~~d~ViHlAa~~~----~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~----~v~~~i~~Ss~~vy~~~~~~~~---~e~~ 140 (338)
T d1udca_ 73 -AIDTVIHFAGLKA----VGESVQKPLEYYDNNVNGTLRLISAMRAA----NVKNFIFSSSATVYGDQPKIPY---VESF 140 (338)
T ss_dssp -TCSEEEECCSCCC----HHHHHHCHHHHHHHHHHHHHHHHHHHHHH----TCCEEEEEEEGGGGCSCCSSSB---CTTS
T ss_pred -CCCEEEECCCccc----hhhHHhCHHHHHHhHHHHHHHHHHHHHHh----CCCEEEecCcceEEcccccccc---cccc
Confidence 6999999999642 12344556789999999999999887654 3348999999776544322111 1122
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
....+...|+.+|.+.+.+......+. .++.+..+.|+.|.++.
T Consensus 141 ~~~~p~~~Y~~sK~~~e~~~~~~~~~~---~~~~~~ilR~~~v~G~~ 184 (338)
T d1udca_ 141 PTGTPQSPYGKSKLMVEQILTDLQKAQ---PDWSIALLRYFNPVGAH 184 (338)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHS---TTCEEEEEEECEEECCC
T ss_pred ccCCCcchHHHHHhhhhHHHHHHHhhc---cCCeEEEEeeccEEecc
Confidence 233456789999999999998877775 37888888888887654
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=5.6e-16 Score=137.31 Aligned_cols=185 Identities=16% Similarity=0.038 Sum_probs=133.4
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch-----HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK-----AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
|+||||||+|-||.+++++|.++|++|+.++|... +++.+....... ...++.++.+|++|.+.+.+++.
T Consensus 2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~ 76 (347)
T d1t2aa_ 2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAH-----IEGNMKLHYGDLTDSTCLVKIIN 76 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC--------------CEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhh-----ccCCcEEEEeecCCchhhHHHHh
Confidence 45699999999999999999999999999999543 223222222111 11378999999999999999988
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
.. .++++++.++... ...+.+.....+++|+.|+.++..++..+-.. +..++|++||.+-+. .. +.
T Consensus 77 ~~-----~~~~v~~~~a~~~----~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~-~~~~~i~~SS~~vyg-~~---~~ 142 (347)
T d1t2aa_ 77 EV-----KPTEIYNLGAQSH----VKISFDLAEYTADVDGVGTLRLLDAVKTCGLI-NSVKFYQASTSELYG-KV---QE 142 (347)
T ss_dssp HH-----CCSEEEECCSCCC----HHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCT-TTCEEEEEEEGGGTC-SC---SS
T ss_pred hc-----ccceeeeeeeccc----cchhhccchhhhhhHHHHHHHHHHHHHHcCCC-CCcEEEEecchheec-CC---CC
Confidence 75 7888899888643 22344556677899999999999887654332 235899999975442 21 11
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
....+..+..+...|+.||.+.+.+++.++... ++.+..+.|+.+..|.
T Consensus 143 ~~~~E~~~~~P~~~Yg~sK~~aE~~~~~~~~~~----~~~~~ilr~~~vyGp~ 191 (347)
T d1t2aa_ 143 IPQKETTPFYPRSPYGAAKLYAYWIVVNFREAY----NLFAVNGILFNHESPR 191 (347)
T ss_dssp SSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTT
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEEecceeCCC
Confidence 122344455566789999999999999887775 6888889998887764
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.67 E-value=4.7e-16 Score=138.03 Aligned_cols=187 Identities=15% Similarity=0.112 Sum_probs=133.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+||+||||||+|-||.+++++|+++|++|+.+.|+.++.+.+.+....... ......+..|++|.+++.+++.
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl~~~~~~~~~~~--- 82 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYP----GRFETAVVEDMLKQGAYDEVIK--- 82 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHST----TTEEEEECSCTTSTTTTTTTTT---
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhcccc----ccccEEEeccccchhhhhhhcc---
Confidence 489999999999999999999999999999999998887766554333222 1245667789999987665542
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc---
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM--- 220 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~--- 220 (298)
.+|+++++++.... . ......+..|+.|+.++.+++... .+-.++|++||..+........+-
T Consensus 83 ----~~~~v~~~a~~~~~----~---~~~~~~~~~nv~gt~~ll~~~~~~---~~v~~~i~~SS~~~~~~~~~~~~~~~~ 148 (342)
T d1y1pa1 83 ----GAAGVAHIASVVSF----S---NKYDEVVTPAIGGTLNALRAAAAT---PSVKRFVLTSSTVSALIPKPNVEGIYL 148 (342)
T ss_dssp ----TCSEEEECCCCCSC----C---SCHHHHHHHHHHHHHHHHHHHHTC---TTCCEEEEECCGGGTCCCCTTCCCCEE
T ss_pred ----cchhhhhhcccccc----c---ccccccccchhhhHHHHHHhhhcc---cccccccccccceeeccCCCCCCCccc
Confidence 68999999986431 1 224456788999999988876542 234699999997654432211110
Q ss_pred -------------cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 221 -------------NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 221 -------------~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
.......+..+...|+.||.+.+.+++.+..+. ..++++.+++|+.+..|.
T Consensus 149 ~e~~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~--~~~~~~~~i~p~~v~Gp~ 212 (342)
T d1y1pa1 149 DEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDEN--KPHFTLNAVLPNYTIGTI 212 (342)
T ss_dssp CTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHH--CCSSEEEEEEESEEECCC
T ss_pred cccccccccccccccccccCCCCCcCcccchhHhHHHHHHHhhhhc--ccccccceecccceeCCC
Confidence 001112233345679999999999999988876 256888899999887764
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.66 E-value=3.1e-15 Score=134.95 Aligned_cols=191 Identities=12% Similarity=0.061 Sum_probs=131.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC----------------chHHHHHHHHHHHhhcCCCCCccEEEEEcC
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN----------------LKAANELIQKWQEEWSGKGLPLNIEAMELD 128 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 128 (298)
|+.||||||+|-||.+++++|+++|+.|+++|.- .....+.......... .++.++.+|
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~D 75 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTG-----KSIELYVGD 75 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHC-----CCCEEEESC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcC-----CCcEEEEcc
Confidence 6889999999999999999999999999998721 1111222222222211 368999999
Q ss_pred CCCHHHHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCC
Q 022369 129 LLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSV 208 (298)
Q Consensus 129 ~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~ 208 (298)
++|.+.++++++.. ++|+++|.|+.... +....+.+.....+++|+.|+.++..++...- ...++++.||.
T Consensus 76 l~d~~~l~~~~~~~-----~~d~ViHlAa~~~~-~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~---~~~~~i~~ss~ 146 (393)
T d1i24a_ 76 ICDFEFLAESFKSF-----EPDSVVHFGEQRSA-PYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFG---EECHLVKLGTM 146 (393)
T ss_dssp TTSHHHHHHHHHHH-----CCSEEEECCSCCCH-HHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHC---TTCEEEEECCG
T ss_pred CCCHHHHHHHHHhh-----cchheecccccccc-ccccccccccccccccccccccHHHHHHHHhc---cccceeecccc
Confidence 99999999998875 79999999987432 11223556677889999999999998765432 22356666665
Q ss_pred ccccCCCCccccccc---------ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 209 MHYVGFVDTEDMNVV---------SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 209 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
..+.......+.... ....+..+...|+.||.+.+.+++.++.+. ++++..+.|+.+..+-
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~----~l~~~~lR~~~v~G~~ 216 (393)
T d1i24a_ 147 GEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQGVVYGVK 216 (393)
T ss_dssp GGGCCCSSCBCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECSC
T ss_pred ccccccccccccccccccccccccccccccccccHHHHHhhhhccccccccccc----ceeeeecccccccCCC
Confidence 443322111110000 011133445679999999999999887776 7899999988887654
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.65 E-value=1.4e-15 Score=134.10 Aligned_cols=187 Identities=14% Similarity=0.015 Sum_probs=135.5
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc-----hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL-----KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
|+||||||+|-||.+++++|+++|++|+.++|.. ++++.+....... ....+.++.+|+++.+++++.++
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Di~~~~~~~~~~~ 76 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNV-----NKALMKLHYADLTDASSLRRWID 76 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC-------------CCEEEEECCTTCHHHHHHHHH
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhc-----cccceEEEEccccCHHHHHHHHh
Confidence 7999999999999999999999999999999853 2222222111111 01378899999999999999887
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCCccccCCCCccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~~~~~~~~~~~~ 219 (298)
.. ++|++||+|+... ...+.++....+..|+.++..+..++.....+.. ..++++.||...+....
T Consensus 77 ~~-----~~D~Vih~Aa~~~----~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~---- 143 (339)
T d1n7ha_ 77 VI-----KPDEVYNLAAQSH----VAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTP---- 143 (339)
T ss_dssp HH-----CCSEEEECCSCCC----HHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSC----
T ss_pred hh-----ccchhhhcccccc----ccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCC----
Confidence 64 7999999999743 2224456678889999999999998876655433 33555555543322221
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVAR 275 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~ 275 (298)
.......+..+...|+.+|.+.+.++....++. ++.+..+.|+.|..|...
T Consensus 144 -~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~ilR~~~vyGp~~~ 194 (339)
T d1n7ha_ 144 -PPQSETTPFHPRSPYAASKCAAHWYTVNYREAY----GLFACNGILFNHESPRRG 194 (339)
T ss_dssp -SSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTSC
T ss_pred -CCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHh----CCCEEEEEEccccCCCCC
Confidence 112334455567889999999999998888776 699999999999887643
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.65 E-value=1.6e-15 Score=135.57 Aligned_cols=205 Identities=13% Similarity=0.149 Sum_probs=141.8
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEE-EEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVM-AVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
.||||||+|-||.+++++|+++|++|++ +++..... .. +.+... ....++.++.+|++|.+.++++++..
T Consensus 2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~-~~-~~~~~~----~~~~~~~~~~~Dl~d~~~l~~~~~~~--- 72 (361)
T d1kewa_ 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAG-NL-ESLSDI----SESNRYNFEHADICDSAEITRIFEQY--- 72 (361)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTC-CG-GGGTTT----TTCTTEEEEECCTTCHHHHHHHHHHH---
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccc-cH-HHHHhh----hhcCCcEEEEccCCCHHHHHHHHHhC---
Confidence 4899999999999999999999997555 44321111 00 111111 11247899999999999999888764
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhc-----CCCCeEEEEcCCccccCCCCccc-
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIR-----GSPSRIINVNSVMHYVGFVDTED- 219 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~-----~~~g~Iv~isS~~~~~~~~~~~~- 219 (298)
++|++||+|+.... ..+.++.++.+++|+.|+.++.+++.....+ .+..++|++||.+.+......+.
T Consensus 73 --~~d~VihlAa~~~~----~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~ 146 (361)
T d1kewa_ 73 --QPDAVMHLAAESHV----DRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEV 146 (361)
T ss_dssp --CCSEEEECCSCCCH----HHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGS
T ss_pred --CCCEEEECccccch----hhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCcc
Confidence 79999999986431 2234556778999999999999998876543 23458999999876654322111
Q ss_pred -----ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCC---chHHHHHHHHhhhh
Q 022369 220 -----MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARD---LPKIVQAAYHLIPY 290 (298)
Q Consensus 220 -----~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~---~~~~~~~~~~~~p~ 290 (298)
........+..+...|+.||.+.+.+++.++..+ |+++..+.|+.|..|.... ++...++....-|+
T Consensus 147 ~~~~~~~~~~e~~~~~p~s~Yg~sK~~~E~~~~~~~~~~----~i~~~~lR~~~vyGp~~~~~~~i~~~i~~~~~g~~~ 221 (361)
T d1kewa_ 147 ENSVTLPLFTETTAYAPSSPYSASKASSDHLVRAWRRTY----GLPTIVTNCSNNYGPYHFPEKLIPLVILNALEGKPL 221 (361)
T ss_dssp CTTSCCCCBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEESTTCCTTSHHHHHHHHHHHTCCE
T ss_pred ccccCCCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEecCceECcCCCcCcHHHHHHHHHHcCCCc
Confidence 1111223344556779999999999999998776 7999999999998876432 24444444443343
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.62 E-value=1.3e-14 Score=126.86 Aligned_cols=183 Identities=16% Similarity=0.069 Sum_probs=131.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|.||||||+|.||.+++++|+++|++|+.++|...... ...+... ....++.++.+|++|.+.+.+.+...
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~--~~~l~~~----~~~~~~~~~~~Dl~d~~~~~~~~~~~--- 71 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDT--RWRLREL----GIEGDIQYEDGDMADACSVQRAVIKA--- 71 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCC--CHHHHHT----TCGGGEEEEECCTTCHHHHHHHHHHH---
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCccc--HHHHHHh----cccCCcEEEEccccChHHhhhhhccc---
Confidence 68999999999999999999999999999998653211 0111111 11247899999999999998888875
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
..++++++|+.... ....+.....+.+|+.|+.++..++...- ...++++.||.. +.+.... .....
T Consensus 72 --~~~~~~~~a~~~~~----~~~~~~~~~~~~~n~~g~~~~l~~~~~~~---~~~~~i~~Ss~~-~~~~~~~---~~~~E 138 (321)
T d1rpna_ 72 --QPQEVYNLAAQSFV----GASWNQPVTTGVVDGLGVTHLLEAIRQFS---PETRFYQASTSE-MFGLIQA---ERQDE 138 (321)
T ss_dssp --CCSEEEECCSCCCH----HHHTTSHHHHHHHHTHHHHHHHHHHHHHC---TTSEEEEEEEGG-GGCSCSS---SSBCT
T ss_pred --cccccccccccccc----cccccchHHHHhhhhhchHHHHHHHHHhC---CCcccccccchh-hcCcccC---CCCCC
Confidence 67788888876431 12224567889999999999988765432 223666666643 4433221 12234
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
..+..+...|+.+|.+.+.+.+.++.+. ++++..+.|+.+..|..
T Consensus 139 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lr~~~vyGp~~ 183 (321)
T d1rpna_ 139 NTPFYPRSPYGVAKLYGHWITVNYRESF----GLHASSGILFNHESPLR 183 (321)
T ss_dssp TSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTS
T ss_pred CCCccccChhHHHHHHHHHHHHHHHhhc----CCcEEEEEEecccCCCc
Confidence 4455667889999999999999888776 68889999988888764
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.60 E-value=1.2e-14 Score=128.60 Aligned_cols=181 Identities=14% Similarity=0.046 Sum_probs=130.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc----hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL----KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
-|++|||||+|.||.+++++|.++|++|+.++|.. ...+........... ..+.++.+|..|........
T Consensus 16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~~d~~~~~~~~- 89 (341)
T d1sb8a_ 16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQW-----SNFKFIQGDIRNLDDCNNAC- 89 (341)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHH-----TTEEEEECCTTSHHHHHHHH-
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhccc-----CCeeEEeecccccccccccc-
Confidence 48999999999999999999999999999998732 222222222111111 36899999999998665442
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
...+.+++.+.... ...+.++....+++|+.|+.++..++... +..++|++||..-+......+
T Consensus 90 ------~~~~~v~~~~a~~~----~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~----~~~~~i~~SS~~vyg~~~~~~-- 153 (341)
T d1sb8a_ 90 ------AGVDYVLHQAALGS----VPRSINDPITSNATNIDGFLNMLIAARDA----KVQSFTYAASSSTYGDHPGLP-- 153 (341)
T ss_dssp ------TTCSEEEECCSCCC----HHHHHHCHHHHHHHHTHHHHHHHHHHHHT----TCSEEEEEEEGGGGTTCCCSS--
T ss_pred ------cccccccccccccc----ccccccCccchhheeehhHHHHHHHHHhc----CCceEEEcccceeeCCCCCCC--
Confidence 25788888776532 12355677889999999999999877543 345999999987654322211
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
..+..+..+...|+.+|.+.+.+++.++... ++++..+.|+.|.++.
T Consensus 154 --~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~i~~~ilR~~~v~G~~ 200 (341)
T d1sb8a_ 154 --KVEDTIGKPLSPYAVTKYVNELYADVFSRCY----GFSTIGLRYFNVFGRR 200 (341)
T ss_dssp --BCTTCCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCCEEEEECCEECTT
T ss_pred --ccCCCCCCCCCcchHHHHHHHHHHHHHHHHh----CCCeEEEEeceeeccC
Confidence 2333444566789999999999999988776 6888899998887664
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=1.2e-14 Score=126.98 Aligned_cols=167 Identities=15% Similarity=0.125 Sum_probs=124.0
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|.||||||+|-||.+++++|+++|+.|+++++.. .+|+.+.+.++++++.-
T Consensus 3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~--------------------------~~~~~~~~~~~~~~~~~--- 53 (315)
T d1e6ua_ 3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD--------------------------ELNLLDSRAVHDFFASE--- 53 (315)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT--------------------------TCCTTCHHHHHHHHHHH---
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch--------------------------hccccCHHHHHHHHhhc---
Confidence 6799999999999999999999999888765431 26899999998887653
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc-cccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE-DMNVVS 224 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~-~~~~~~ 224 (298)
.+|.++++|+.... .........+.+++|+.|+.+++.++... +-.++|++||.+.+.+....+ +.+...
T Consensus 54 --~~d~v~~~a~~~~~---~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~----~v~~~i~~SS~~vyg~~~~~~~~E~~~~ 124 (315)
T d1e6ua_ 54 --RIDQVYLAAAKVGG---IVANNTYPADFIYQNMMIESNIIHAAHQN----DVNKLLFLGSSCIYPKLAKQPMAESELL 124 (315)
T ss_dssp --CCSEEEECCCCCCC---HHHHHHCHHHHHHHHHHHHHHHHHHHHHT----TCCEEEEECCGGGSCTTCCSSBCGGGTT
T ss_pred --CCCEEEEcchhccc---cccchhhHHHHHHHHHHHHHHHHHHHHHc----CCCEEEEECCceEcCCCCCCCccCCccc
Confidence 68999999876431 12234455667889999999998876543 344899999987765432211 111112
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
...+.+....|+.||.+.+.+.+.+..+. |+++..+.|+.|..|..
T Consensus 125 ~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gl~~~ilR~~~vyGp~~ 170 (315)
T d1e6ua_ 125 QGTLEPTNEPYAIAKIAGIKLCESYNRQY----GRDYRSVMPTNLYGPHD 170 (315)
T ss_dssp SSCCCGGGHHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEESTTC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEeeccEECCCC
Confidence 22333445679999999999999998876 79999999999988754
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.58 E-value=3.8e-14 Score=125.62 Aligned_cols=189 Identities=16% Similarity=0.065 Sum_probs=136.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.+||.||||||+|-||.+++++|+++|++|+.++|+..+.....+.... ...+.++.+|++|++.+.++.+..
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~-------~~~i~~~~~Dl~d~~~l~~~~~~~ 78 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARV-------ADGMQSEIGDIRDQNKLLESIREF 78 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTT-------TTTSEEEECCTTCHHHHHHHHHHH
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhc-------ccCCeEEEeeccChHhhhhhhhhc
Confidence 4689999999999999999999999999999999987665544333211 136899999999999999888875
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
.+|++++.|+... ...+.+..+..+++|+.|+.++.+++... .....++..|+......... ...
T Consensus 79 -----~~~~v~~~aa~~~----~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~---~~~~~~~~~s~~~~~~~~~~---~~~ 143 (356)
T d1rkxa_ 79 -----QPEIVFHMAAQPL----VRLSYSEPVETYSTNVMGTVYLLEAIRHV---GGVKAVVNITSDKCYDNKEW---IWG 143 (356)
T ss_dssp -----CCSEEEECCSCCC----HHHHHHCHHHHHHHHTHHHHHHHHHHHHH---CCCCEEEEECCGGGBCCCCS---SSC
T ss_pred -----hhhhhhhhhcccc----ccccccCCccccccccccchhhhhhhhcc---cccccccccccccccccccc---ccc
Confidence 7899999998642 23345667788999999999998877542 22335555554433322211 111
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCC-----CCCcEEEEeeCCccccCc
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPA-----ESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~-----~~gI~v~~v~Pg~v~T~~ 273 (298)
.....+..+...|+.+|.+...+.+..+.++.. ..++.+..+.|+.+..|-
T Consensus 144 ~~~~~~~~p~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~ 199 (356)
T d1rkxa_ 144 YRENEAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGG 199 (356)
T ss_dssp BCTTSCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTT
T ss_pred cccccccCCCCccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCC
Confidence 122334455678999999999999888876521 246888899998887654
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=5.9e-14 Score=124.17 Aligned_cols=183 Identities=17% Similarity=0.068 Sum_probs=127.5
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc------CchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVR------NLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
|.||||||+|-||.+++++|+++|++|+.+++ +........+.+..... .++.++++|++|.+.++++.
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~d~~~l~~~~ 77 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTG-----RSVEFEEMDILDQGALQRLF 77 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHT-----CCCEEEECCTTCHHHHHHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcC-----CCcEEEEeeccccccccccc
Confidence 67999999999999999999999999999874 11111222222222111 37899999999999998887
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
.. ..+|+++|.|+.... ..+.++..+.+++|+.|+.++..++.. .+-.+++++||...+........
T Consensus 78 ~~-----~~~~~i~h~Aa~~~~----~~~~~~p~~~~~~Nv~gt~~l~~~~~~----~~v~~~i~~ss~~~~~~~~~~~~ 144 (346)
T d1ek6a_ 78 KK-----YSFMAVIHFAGLKAV----GESVQKPLDYYRVNLTGTIQLLEIMKA----HGVKNLVFSSSATVYGNPQYLPL 144 (346)
T ss_dssp HH-----CCEEEEEECCSCCCH----HHHHHCHHHHHHHHHHHHHHHHHHHHH----TTCCEEEEEEEGGGGCSCSSSSB
T ss_pred cc-----cccccccccccccCc----HhhHhCHHHHHHhhhcccccccchhhh----cCcccccccccceeeeccccccc
Confidence 76 378899999997532 234445667899999999998887643 34458999988765544322111
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
. ...........|+.+|.+.+...+.++... .++....+.|+.+.++
T Consensus 145 ~---~~~~~~~~~~~Y~~~k~~~e~~~~~~~~~~---~~~~~~~lR~~~v~G~ 191 (346)
T d1ek6a_ 145 D---EAHPTGGCTNPYGKSKFFIEEMIRDLCQAD---KTWNAVLLRYFNPTGA 191 (346)
T ss_dssp C---TTSCCCCCSSHHHHHHHHHHHHHHHHHHHC---TTCEEEEEEECEEECC
T ss_pred c---ccccccccCChHHHHHHHHHHHHHHHHHhc---cCCceEEEeecceecc
Confidence 1 111122344579999999998888776643 4678888877776654
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=3.9e-14 Score=116.42 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=106.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
..|.++||||+|+||.+++++|+++|++|+++.|+++++.... ...+.++.+|++|.+++.++++
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~------------~~~~~~~~gD~~d~~~l~~al~--- 66 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG------------PRPAHVVVGDVLQAADVDKTVA--- 66 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSS------------CCCSEEEESCTTSHHHHHHHHT---
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccc------------ccccccccccccchhhHHHHhc---
Confidence 3578999999999999999999999999999999988754321 1357889999999998877654
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVV 223 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~ 223 (298)
+.|++|+++|........ +++..+ ++.++..+++.+-.++|++||.......
T Consensus 67 ----~~d~vi~~~g~~~~~~~~-----------~~~~~~----~~~l~~aa~~~~v~r~i~~ss~~~~~~~--------- 118 (205)
T d1hdoa_ 67 ----GQDAVIVLLGTRNDLSPT-----------TVMSEG----ARNIVAAMKAHGVDKVVACTSAFLLWDP--------- 118 (205)
T ss_dssp ----TCSEEEECCCCTTCCSCC-----------CHHHHH----HHHHHHHHHHHTCCEEEEECCGGGTSCT---------
T ss_pred ----CCCEEEEEeccCCchhhh-----------hhhHHH----HHHHHHHHHhcCCCeEEEEeeeeccCCC---------
Confidence 579999999874322111 122233 3344555667677799999986543321
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcccc
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T 271 (298)
....+....|...|...+.+ + +..|++.+.|.||.+..
T Consensus 119 --~~~~~~~~~~~~~~~~~e~~-------l-~~~~~~~tiirp~~~~~ 156 (205)
T d1hdoa_ 119 --TKVPPRLQAVTDDHIRMHKV-------L-RESGLKYVAVMPPHIGD 156 (205)
T ss_dssp --TCSCGGGHHHHHHHHHHHHH-------H-HHTCSEEEEECCSEEEC
T ss_pred --ccccccccccchHHHHHHHH-------H-HhcCCceEEEecceecC
Confidence 01112223455555544322 2 23589999999998853
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=2.8e-14 Score=124.86 Aligned_cols=176 Identities=12% Similarity=0.029 Sum_probs=121.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch-HHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK-AANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
|.+|||||+|-||.+++++|+++|++|+.++|... ..+.+. .. . ...++.....|+.+.
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~-~~---~----~~~~~d~~~~~~~~~------------ 61 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVE-HW---I----GHENFELINHDVVEP------------ 61 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTG-GG---T----TCTTEEEEECCTTSC------------
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHH-Hh---c----CCCceEEEehHHHHH------------
Confidence 78999999999999999999999999999987322 111111 10 0 012456666665432
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcc-ccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTE-DMNVV 223 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~-~~~~~ 223 (298)
.+.++|++||+|+..... .+.++.++.+++|+.|+.++++++.. .+ .++|++||.+.+......+ +.+..
T Consensus 62 ~~~~~d~VihlAa~~~~~----~~~~~~~~~~~~Nv~g~~~ll~~~~~----~~-~k~I~~SS~~vy~~~~~~~~~e~~~ 132 (312)
T d2b69a1 62 LYIEVDQIYHLASPASPP----NYMYNPIKTLKTNTIGTLNMLGLAKR----VG-ARLLLASTSEVYGDPEVHPQSEDYW 132 (312)
T ss_dssp CCCCCSEEEECCSCCSHH----HHTTCHHHHHHHHHHHHHHHHHHHHH----HT-CEEEEEEEGGGGBSCSSSSBCTTCC
T ss_pred HHcCCCEEEECcccCCch----hHHhCHHHHHHHHHHHHHHHHHHHHH----cC-CcEEEEEChheecCCCCCCCCcccc
Confidence 223699999999865321 12245667889999999999987643 23 4899999976554321111 11222
Q ss_pred ccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 224 SGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 224 ~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
....+..+...|+.||.+.+.+++..+.++ |+++..+.|+.|..|..
T Consensus 133 ~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lR~~~vyGp~~ 179 (312)
T d2b69a1 133 GHVNPIGPRACYDEGKRVAETMCYAYMKQE----GVEVRVARIFNTFGPRM 179 (312)
T ss_dssp CBCCSSSTTHHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECCEECTTC
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHh----CCcEEEEEeeeEECCCC
Confidence 233455567889999999999999988876 79999999999988754
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=8.7e-14 Score=122.79 Aligned_cols=178 Identities=12% Similarity=-0.011 Sum_probs=126.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
.+|||||+|-||.+++++|+++|. +|+.+++...+.....+ ..++.++++|+++.+++.+.+.+
T Consensus 2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~-----------~~~~~~i~~Di~~~~~~~~~~~~---- 66 (342)
T d2blla1 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLN-----------HPHFHFVEGDISIHSEWIEYHVK---- 66 (342)
T ss_dssp EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTT-----------CTTEEEEECCTTTCSHHHHHHHH----
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhcc-----------CCCeEEEECccCChHHHHHHHHh----
Confidence 489999999999999999999995 89999887554433321 13799999999998776554332
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc---cc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM---NV 222 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~---~~ 222 (298)
++|++||+|+.... ....++....+.+|+.|+.++.+++... +-+++++||...+......... ..
T Consensus 67 --~~d~Vih~a~~~~~----~~~~~~~~~~~~~nv~gt~~ll~~~~~~-----~~~~~~~ss~~~~~~~~~~~~~~~~~~ 135 (342)
T d2blla1 67 --KCDVVLPLVAIATP----IEYTRNPLRVFELDFEENLRIIRYCVKY-----RKRIIFPSTSEVYGMCSDKYFDEDHSN 135 (342)
T ss_dssp --HCSEEEECBCCCCH----HHHHHSHHHHHHHHTHHHHHHHHHHHHT-----TCEEEEECCGGGGBTCCCSSBCTTTCC
T ss_pred --CCCccccccccccc----cccccCCccccccccccccccccccccc-----ccccccccccccccccccccccccccc
Confidence 58999999997542 1233445678999999999999986442 2466777776655443221110 01
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
........+...|+.||.+.+.+.+...... |+++..+.|..+..+..
T Consensus 136 ~~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~i~r~~~~~g~~~ 183 (342)
T d2blla1 136 LIVGPVNKPRWIYSVSKQLLDRVIWAYGEKE----GLQFTLFRPFNWMGPRL 183 (342)
T ss_dssp CBCCCTTCGGGHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECSEECSSC
T ss_pred ccccccCCCcchhhhcccchhhhhhhhhccc----CceeEEeeccccccccc
Confidence 1111222345679999999999999988876 78898888888877643
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.52 E-value=3.5e-13 Score=118.00 Aligned_cols=166 Identities=15% Similarity=0.074 Sum_probs=116.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC--chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRN--LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.||||||+|-||.+++++|+++|++|+.+++- ....+. .+.+... .++.++.+|++|.+++.++++..
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~-~~~~~~~-------~~~~~i~~Di~~~~~l~~~~~~~-- 71 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDN-LHWLSSL-------GNFEFVHGDIRNKNDVTRLITKY-- 71 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHH-HHHHHTT-------CCCEEEECCTTCHHHHHHHHHHH--
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhH-HHHhhcc-------CCcEEEEcccCCHHHHHHHHHhc--
Confidence 48999999999999999999999999998752 222222 2222221 36899999999999999988875
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc----
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM---- 220 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~---- 220 (298)
++|++||+|+.... ....++.+..+++|+.|+.++++++... +..+.|+.||.....+.......
T Consensus 72 ---~~d~Vih~aa~~~~----~~~~~~~~~~~~~Nv~gt~nll~~~~~~----~~~~~i~~sS~~~~~~~~~~~~~~~~~ 140 (338)
T d1orra_ 72 ---MPDSCFHLAGQVAM----TTSIDNPCMDFEINVGGTLNLLEAVRQY----NSNCNIIYSSTNKVYGDLEQYKYNETE 140 (338)
T ss_dssp ---CCSEEEECCCCCCH----HHHHHCHHHHHHHHHHHHHHHHHHHHHH----CTTCEEEEEEEGGGGTTCTTSCEEECS
T ss_pred ---CCceEEeecccccc----cccccChHHHHHHHHHHHHHHHHhhhcc----ccccccccccccccccccccccccccc
Confidence 68999999987532 2233456788999999999999876543 33455666665544443221110
Q ss_pred ---------cccccccCCCCcccchhhHHHHHHHHHHHHHHc
Q 022369 221 ---------NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRL 253 (298)
Q Consensus 221 ---------~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~ 253 (298)
.......+..+...|+.+|...+.+.......+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~ 182 (338)
T d1orra_ 141 TRYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIF 182 (338)
T ss_dssp SCEEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCcccCCccccccccccccchhhhhhhhhhhcc
Confidence 111223344456789999999999988888776
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.52 E-value=4.9e-13 Score=119.91 Aligned_cols=193 Identities=15% Similarity=0.107 Sum_probs=134.7
Q ss_pred CEEEEeCCCCchHHHHHHHHHH-cCCEEEEEEc---------CchHHHHHHHHHHHhhcCC--CCCccEEEEEcCCCCHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAE-SGAHVVMAVR---------NLKAANELIQKWQEEWSGK--GLPLNIEAMELDLLSLD 133 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~-~G~~Vil~~r---------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~D~s~~~ 133 (298)
..||||||+|-||.+++++|++ .|++|+++|+ +.+..++....+....... .....+.++.+|++|.+
T Consensus 3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~ 82 (383)
T d1gy8a_ 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNED 82 (383)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCHH
Confidence 4699999999999999999986 6899999874 2334444444443321111 11136889999999999
Q ss_pred HHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccC
Q 022369 134 SVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVG 213 (298)
Q Consensus 134 ~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~ 213 (298)
.++++++.. ..+|+++|.|+.... ....+.....+++|+.++..+..++.. .+..+++++++...+..
T Consensus 83 ~l~~~~~~~----~~~d~ViH~Aa~~~~----~~~~~~~~~~~~~N~~~t~~~l~~~~~----~~~~~~~~~~s~~~~~~ 150 (383)
T d1gy8a_ 83 FLNGVFTRH----GPIDAVVHMCAFLAV----GESVRDPLKYYDNNVVGILRLLQAMLL----HKCDKIIFSSSAAIFGN 150 (383)
T ss_dssp HHHHHHHHS----CCCCEEEECCCCCCH----HHHHHCHHHHHHHHHHHHHHHHHHHHH----TTCCEEEEEEEGGGTBS
T ss_pred Hhhhhhhcc----ceeehhhcccccccc----cccccccccccccccccccccchhhhc----cCCcccccccccccccc
Confidence 988888753 478999999997542 223345567788999999999887654 33457888777655443
Q ss_pred CCCc---ccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 214 FVDT---EDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 214 ~~~~---~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
.... ..........+..+...|+.+|.+.+.+++.+...+ |+.+.++.|+.+..+..
T Consensus 151 ~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~----gl~~~~lR~~~vyG~~~ 210 (383)
T d1gy8a_ 151 PTMGSVSTNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAY----GIKGICLRYFNACGAHE 210 (383)
T ss_dssp CCC-----CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECEEECCCT
T ss_pred cccccccccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHh----CCCEEEEecceeeccCc
Confidence 2211 111112233445567889999999999999887766 79999999988876654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.51 E-value=5.9e-14 Score=124.98 Aligned_cols=181 Identities=18% Similarity=0.116 Sum_probs=130.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++..||||||+|-||.+++++|.++|+.|+.+++....-. ... .....+..+|+.+.+.+.++.+
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~------~~~------~~~~~~~~~D~~~~~~~~~~~~--- 78 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHM------TED------MFCDEFHLVDLRVMENCLKVTE--- 78 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSS------CGG------GTCSEEEECCTTSHHHHHHHHT---
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccch------hhh------cccCcEEEeechhHHHHHHHhh---
Confidence 5667999999999999999999999999999987543210 000 0245778899999987766543
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc---
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM--- 220 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~--- 220 (298)
.+|.+||.|+.... .....+.....+.+|+.++.++..++... +-.++|++||...+......+..
T Consensus 79 ----~~d~Vih~a~~~~~---~~~~~~~~~~~~~~n~~gt~~ll~~~~~~----~vk~~i~~SS~~~~~~~~~~~~~~~~ 147 (363)
T d2c5aa1 79 ----GVDHVFNLAADMGG---MGFIQSNHSVIMYNNTMISFNMIEAARIN----GIKRFFYASSACIYPEFKQLETTNVS 147 (363)
T ss_dssp ----TCSEEEECCCCCCC---HHHHTTCHHHHHHHHHHHHHHHHHHHHHT----TCSEEEEEEEGGGSCGGGSSSSSSCE
T ss_pred ----cCCeEeeccccccc---ccccccccccccccccchhhHHHHhHHhh----Cccccccccccccccccccccccccc
Confidence 68999999987532 22234567778889999999988876553 34599999997765433221110
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
.......+..+...|+.+|.+.+.+++.+..+. |+++..+.|+.+..+..
T Consensus 148 ~~~~e~~~~~p~~~Yg~sK~~~E~~~~~~~~~~----gl~~~ilR~~~vyG~~~ 197 (363)
T d2c5aa1 148 LKESDAWPAEPQDAFGLEKLATEELCKHYNKDF----GIECRIGRFHNIYGPFG 197 (363)
T ss_dssp ECGGGGSSBCCSSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEECTTS
T ss_pred cccccCCcCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEEeeeEeccCC
Confidence 011122233456789999999999999888776 79999999999987653
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.50 E-value=1.3e-13 Score=122.13 Aligned_cols=181 Identities=15% Similarity=0.095 Sum_probs=124.4
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc---hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL---KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
|.||||||+|-||.+++++|.++|+.|.+++++. ...... +.. . .+.++.++.+|++|.+.+.++.+
T Consensus 3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~---~~~-~----~~~~i~~~~~Di~d~~~~~~~~~-- 72 (346)
T d1oc2a_ 3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKAN---LEA-I----LGDRVELVVGDIADAELVDKLAA-- 72 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGG---TGG-G----CSSSEEEEECCTTCHHHHHHHHT--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHH---HHH-h----hcCCeEEEEccCCCHHHHHHHHh--
Confidence 7899999999999999999999998655544321 000000 000 0 12478999999999998877753
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc---
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED--- 219 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~--- 219 (298)
..|.+++.|+.... ....++.++.+++|+.|+.++..++... +.++|++||...+...+...+
T Consensus 73 -----~~~~v~~~a~~~~~----~~~~~~~~~~~~~N~~g~~nll~~~~~~-----~~k~i~~ss~~vyg~~~~~~~~~~ 138 (346)
T d1oc2a_ 73 -----KADAIVHYAAESHN----DNSLNDPSPFIHTNFIGTYTLLEAARKY-----DIRFHHVSTDEVYGDLPLREDLPG 138 (346)
T ss_dssp -----TCSEEEECCSCCCH----HHHHHCCHHHHHHHTHHHHHHHHHHHHH-----TCEEEEEEEGGGGCCBCCGGGSTT
T ss_pred -----hhhhhhhhhhcccc----cchhhCcccceeeehHhHHhhhhhhccc-----cccccccccceEecccCccccccc
Confidence 57778888887542 1233455678899999999998876443 247888887765432211111
Q ss_pred -----ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 220 -----MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 220 -----~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
........+..+...|+.+|.+.+.+++...++. |+++.++.|+.|..|..
T Consensus 139 ~~~~~~~~~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~----~i~~~ilR~~~vyGp~~ 194 (346)
T d1oc2a_ 139 HGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSF----GVKATISNCSNNYGPYQ 194 (346)
T ss_dssp TTCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCEEEEEEECCEESTTC
T ss_pred cccCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHc----CCCEEEEeecceeCCCC
Confidence 1111222333455779999999999999888776 79999999999988753
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.46 E-value=1.3e-13 Score=120.85 Aligned_cols=179 Identities=14% Similarity=0.063 Sum_probs=126.8
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEE------EEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHV------VMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~V------il~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+|||||+|-||.+++++|+++|+.| +..++....... ..+... ....++.++..|.++........
T Consensus 2 kIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~--~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~- 74 (322)
T d1r6da_ 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR--ANLAPV----DADPRLRFVHGDIRDAGLLAREL- 74 (322)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG--GGGGGG----TTCTTEEEEECCTTCHHHHHHHT-
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH--hHhhhh----hcCCCeEEEEeccccchhhhccc-
Confidence 48999999999999999999998754 444432111000 001110 11147999999999998666432
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
...|.++|.|+... .....+..++.+++|+.|+.++.+++.. .+..++|++||.+.+......
T Consensus 75 ------~~~d~vi~~a~~~~----~~~~~~~~~~~~~~N~~gt~~ll~~~~~----~~~~~~I~~Ss~~~yg~~~~~--- 137 (322)
T d1r6da_ 75 ------RGVDAIVHFAAESH----VDRSIAGASVFTETNVQGTQTLLQCAVD----AGVGRVVHVSTNQVYGSIDSG--- 137 (322)
T ss_dssp ------TTCCEEEECCSCCC----HHHHHHCCHHHHHHHTHHHHHHHHHHHH----TTCCEEEEEEEGGGGCCCSSS---
T ss_pred ------cccceEEeeccccc----ccccccchHHHhhhhHHHHHHHHHHHHH----cCCceEEEeecceeecCCCCC---
Confidence 36899999998743 2334566777889999999999988754 334589999997665433211
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCcc
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVA 274 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~ 274 (298)
......+..+...|+.+|.+.+.+.+.++++. |+++..+.|+.|..|..
T Consensus 138 -~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~----~~~~~~lR~~~vyGp~~ 186 (322)
T d1r6da_ 138 -SWTESSPLEPNSPYAASKAGSDLVARAYHRTY----GLDVRITRCCNNYGPYQ 186 (322)
T ss_dssp -CBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHH----CCCEEEEEECEEECTTC
T ss_pred -CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh----CCCEEEEEeeeEECcCC
Confidence 12334445566789999999999999998876 79999999999988754
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.37 E-value=8.5e-12 Score=103.34 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=109.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++||||||+|.||.+++++|+++|+ .|+...|++++.+.. ...+.++.+|+++.+++.++++
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~-------------~~~~~~~~~d~~~~~~~~~~~~--- 67 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-------------GGEADVFIGDITDADSINPAFQ--- 67 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-------------TCCTTEEECCTTSHHHHHHHHT---
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhc-------------cCCcEEEEeeeccccccccccc---
Confidence 6899999999999999999999996 466677887654432 1257789999999998877654
Q ss_pred cccCCccEEEEccCCCCCCC---------CCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCC
Q 022369 144 GRLGPLHVLINNAGIFSIGE---------PQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGF 214 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~---------~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~ 214 (298)
.+|.+||+|+...... ..............+|+.++..+....... ..++..+.++.......
T Consensus 68 ----~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~~~~~ 139 (252)
T d2q46a1 68 ----GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVA----GVKHIVVVGSMGGTNPD 139 (252)
T ss_dssp ----TCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHH----TCSEEEEEEETTTTCTT
T ss_pred ----cceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeeccccccc----cccccccccccccCCCC
Confidence 5899999998653211 112223345566778888888877655443 34678888776433221
Q ss_pred CCcccccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 215 VDTEDMNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
.+....+...+.......+.+..+ .|+++..+.||.+..+.
T Consensus 140 --------------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ilRp~~v~g~~ 180 (252)
T d2q46a1 140 --------------HPLNKLGNGNILVWKRKAEQYLAD----SGTPYTIIRAGGLLDKE 180 (252)
T ss_dssp --------------CGGGGGGGCCHHHHHHHHHHHHHH----SSSCEEEEEECEEECSC
T ss_pred --------------cccccccccchhhhhhhhhhhhhc----ccccceeecceEEECCC
Confidence 111122222222223333333333 47999999999986664
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=6.4e-13 Score=111.15 Aligned_cols=158 Identities=17% Similarity=0.139 Sum_probs=112.3
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
+++|++|||||||.||.+++++|.++|. +|++++|++.+..... ...+....+|+.+.+++.
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~------------~~~i~~~~~D~~~~~~~~---- 75 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA------------YKNVNQEVVDFEKLDDYA---- 75 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG------------GGGCEEEECCGGGGGGGG----
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc------------cceeeeeeeccccccccc----
Confidence 5678999999999999999999999995 8999999865432210 125777778888766543
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccc
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDM 220 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~ 220 (298)
+.+...|++|+++|... .........++|+.++..+.+++.. .+-.++|++|+.....
T Consensus 76 ---~~~~~~d~vi~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~----~~v~~fi~~Ss~~~~~-------- 133 (232)
T d2bkaa1 76 ---SAFQGHDVGFCCLGTTR-------GKAGAEGFVRVDRDYVLKSAELAKA----GGCKHFNLLSSKGADK-------- 133 (232)
T ss_dssp ---GGGSSCSEEEECCCCCH-------HHHHHHHHHHHHTHHHHHHHHHHHH----TTCCEEEEECCTTCCT--------
T ss_pred ---ccccccccccccccccc-------cccchhhhhhhcccccceeeecccc----cCccccccCCcccccc--------
Confidence 33346899999998632 2234556678899999998887643 3455899999975322
Q ss_pred cccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCc-EEEEeeCCccccCccC
Q 022369 221 NVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGI-NVVCVSPGIVSTNVAR 275 (298)
Q Consensus 221 ~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI-~v~~v~Pg~v~T~~~~ 275 (298)
.....|+.+|...+... .++ +. ++..+.||.+..+...
T Consensus 134 ---------~~~~~Y~~~K~~~E~~l----~~~----~~~~~~IlRP~~i~G~~~~ 172 (232)
T d2bkaa1 134 ---------SSNFLYLQVKGEVEAKV----EEL----KFDRYSVFRPGVLLCDRQE 172 (232)
T ss_dssp ---------TCSSHHHHHHHHHHHHH----HTT----CCSEEEEEECCEEECTTGG
T ss_pred ---------CccchhHHHHHHhhhcc----ccc----cccceEEecCceeecCCCc
Confidence 22345999998766432 222 33 5778899999877543
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.22 E-value=1.7e-15 Score=123.09 Aligned_cols=47 Identities=21% Similarity=0.344 Sum_probs=42.6
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhc
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWS 114 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~ 114 (298)
+.|+||+|+||.++|+.|++.|++|++.+|++++++++.+++.....
T Consensus 3 i~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~ 49 (212)
T d1jaya_ 3 VALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAG 49 (212)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred EEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC
Confidence 56778889999999999999999999999999999999999887543
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.18 E-value=2.9e-10 Score=96.49 Aligned_cols=160 Identities=18% Similarity=0.250 Sum_probs=110.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
.+|||||+|.||.+++++|.++|+.|+.++|+. +|++|.++++++++..
T Consensus 3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~---------------------------~D~~d~~~~~~~l~~~---- 51 (281)
T d1vl0a_ 3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQD---------------------------LDITNVLAVNKFFNEK---- 51 (281)
T ss_dssp EEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT---------------------------CCTTCHHHHHHHHHHH----
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCEEEEeechh---------------------------ccCCCHHHHHHHHHHc----
Confidence 389999999999999999999999999998761 5899999999888765
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
++|++||+|+... .+.+....+..++.|+.....+....... ...+++.||...+..... ......
T Consensus 52 -~~d~vih~a~~~~----~~~~~~~~~~~~~~n~~~~~~~~~~~~~~-----~~~~~~~ss~~v~~~~~~----~~~~e~ 117 (281)
T d1vl0a_ 52 -KPNVVINCAAHTA----VDKCEEQYDLAYKINAIGPKNLAAAAYSV-----GAEIVQISTDYVFDGEAK----EPITEF 117 (281)
T ss_dssp -CCSEEEECCCCCC----HHHHHHCHHHHHHHHTHHHHHHHHHHHHH-----TCEEEEEEEGGGSCSCCS----SCBCTT
T ss_pred -CCCEEEeeccccc----cccccccchhhcccccccccccccccccc-----cccccccccceeeecccc----cccccc
Confidence 7899999988643 12233445667778887777776655442 236666666543332211 112233
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCccCCchH
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNVARDLPK 279 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~~~~~~~ 279 (298)
.+..+...|+.+|...+.+.+. . +.+...+.|+.+..+-.+....
T Consensus 118 ~~~~~~~~~~~~k~~~e~~~~~----~----~~~~~i~R~~~vyG~~~~~~~~ 162 (281)
T d1vl0a_ 118 DEVNPQSAYGKTKLEGENFVKA----L----NPKYYIVRTAWLYGDGNNFVKT 162 (281)
T ss_dssp SCCCCCSHHHHHHHHHHHHHHH----H----CSSEEEEEECSEESSSSCHHHH
T ss_pred ccccchhhhhhhhhHHHHHHHH----h----CCCccccceeEEeCCCcccccc
Confidence 3445667788888776654432 2 4677789999998775443333
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.11 E-value=2e-10 Score=98.14 Aligned_cols=139 Identities=17% Similarity=0.150 Sum_probs=97.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
.+|||||+|-||.++++.|.++|. ++.++++... +..|++|.+.++++++..
T Consensus 2 KILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~-----------------------~~~Dl~~~~~~~~~i~~~---- 53 (298)
T d1n2sa_ 2 NILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKE-----------------------FCGDFSNPKGVAETVRKL---- 53 (298)
T ss_dssp EEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSS-----------------------SCCCTTCHHHHHHHHHHH----
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCcc-----------------------ccCcCCCHHHHHHHHHHc----
Confidence 489999999999999999999885 5555554211 347999999999988875
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
++|++||+||..... .+.+.-+..+++|+.++..+..++.. .+.+++++||...+......+ ....
T Consensus 54 -~~D~Vih~Aa~~~~~----~~~~~~~~~~~~n~~~~~~l~~~~~~-----~~~~~~~~ss~~~~~~~~~~~----~~E~ 119 (298)
T d1n2sa_ 54 -RPDVIVNAAAHTAVD----KAESEPELAQLLNATSVEAIAKAANE-----TGAWVVHYSTDYVFPGTGDIP----WQET 119 (298)
T ss_dssp -CCSEEEECCCCCCHH----HHTTCHHHHHHHHTHHHHHHHHHHTT-----TTCEEEEEEEGGGSCCCTTCC----BCTT
T ss_pred -CCCEEEEeccccccc----ccccCccccccccccccccchhhhhc-----cccccccccccccccCCCCCC----Cccc
Confidence 699999999975321 22344567889999999999887633 345788888865443322211 1233
Q ss_pred cCCCCcccchhhHHHHHHHHH
Q 022369 227 RKYTSLMGYSGSKLAQIKFSS 247 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~ 247 (298)
.+..+...|+.+|.+.+.+.+
T Consensus 120 ~~~~p~~~y~~~k~~~e~~~~ 140 (298)
T d1n2sa_ 120 DATSPLNVYGKTKLAGEKALQ 140 (298)
T ss_dssp SCCCCSSHHHHHHHHHHHHHH
T ss_pred cccCCCchHhhhhhhhhhhHH
Confidence 334456779999987765543
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.02 E-value=2.2e-09 Score=92.02 Aligned_cols=159 Identities=13% Similarity=-0.005 Sum_probs=94.6
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
+.||||||+|.||.+++++|+++|++|+++.|+.........+....... ..+.++.+|+.|.+.+.+.++
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~----~~v~~v~~d~~d~~~~~~~~~----- 74 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQ----LGAKLIEASLDDHQRLVDALK----- 74 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHT----TTCEEECCCSSCHHHHHHHHT-----
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhcc----CCcEEEEeecccchhhhhhcc-----
Confidence 45999999999999999999999999999999754322111111111111 268899999999998876654
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccccccccc
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSG 225 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~ 225 (298)
..+.++++++.... ..|..+...+..++ .+....++++.||....... .
T Consensus 75 --~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~a----~~~~~~~~v~~Ss~g~~~~~----------~ 123 (312)
T d1qyda_ 75 --QVDVVISALAGGVL---------------SHHILEQLKLVEAI----KEAGNIKRFLPSEFGMDPDI----------M 123 (312)
T ss_dssp --TCSEEEECCCCSSS---------------STTTTTHHHHHHHH----HHSCCCSEEECSCCSSCTTS----------C
T ss_pred --Ccchhhhhhhhccc---------------ccchhhhhHHHHHH----HHhcCCcEEEEeeccccCCC----------c
Confidence 57788888775321 12333333333332 33444577777765322221 1
Q ss_pred ccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccC
Q 022369 226 RRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTN 272 (298)
Q Consensus 226 ~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~ 272 (298)
..+......|..+|..+. ....+ .++.+..+.|+.+..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~----~~~~~----~~~~~~i~r~~~~~g~ 162 (312)
T d1qyda_ 124 EHALQPGSITFIDKRKVR----RAIEA----ASIPYTYVSSNMFAGY 162 (312)
T ss_dssp CCCCSSTTHHHHHHHHHH----HHHHH----TTCCBCEEECCEEHHH
T ss_pred ccccchhhhhhHHHHHHH----Hhhcc----cccceEEeccceeecC
Confidence 111123333444444433 33333 3677777888877543
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.01 E-value=2.1e-09 Score=87.74 Aligned_cols=149 Identities=12% Similarity=0.096 Sum_probs=98.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|.+|||||||.||.+++++|+++|. +|+...|++... ..++ ..+..|..++.
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~----------------~~~~---~~~~~d~~~~~------ 56 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE----------------HPRL---DNPVGPLAELL------ 56 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC----------------CTTE---ECCBSCHHHHG------
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh----------------cccc---cccccchhhhh------
Confidence 37899999999999999999999997 677667663210 0122 34445544321
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNV 222 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~ 222 (298)
....+.+|.+|+++|.... ....-+...++|+.++..+++++ ++.+-.+++++||..+..
T Consensus 57 ~~~~~~~d~vi~~~g~~~~------~~~~~~~~~~~~~~~~~~~~~~a----~~~~v~~~i~~Ss~~~~~---------- 116 (212)
T d2a35a1 57 PQLDGSIDTAFCCLGTTIK------EAGSEEAFRAVDFDLPLAVGKRA----LEMGARHYLVVSALGADA---------- 116 (212)
T ss_dssp GGCCSCCSEEEECCCCCHH------HHSSHHHHHHHHTHHHHHHHHHH----HHTTCCEEEEECCTTCCT----------
T ss_pred hccccchheeeeeeeeecc------ccccccccccchhhhhhhccccc----cccccccccccccccccc----------
Confidence 2233579999999986421 11223567788999998888865 344556999999975322
Q ss_pred cccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCc-EEEEeeCCccccCc
Q 022369 223 VSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGI-NVVCVSPGIVSTNV 273 (298)
Q Consensus 223 ~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI-~v~~v~Pg~v~T~~ 273 (298)
.....|..+|...+... .+. +. +.+.+.|+.|..+.
T Consensus 117 -------~~~~~y~~~K~~~E~~l----~~~----~~~~~~I~Rp~~v~G~~ 153 (212)
T d2a35a1 117 -------KSSIFYNRVKGELEQAL----QEQ----GWPQLTIARPSLLFGPR 153 (212)
T ss_dssp -------TCSSHHHHHHHHHHHHH----TTS----CCSEEEEEECCSEESTT
T ss_pred -------ccccchhHHHHHHhhhc----ccc----ccccceeeCCcceeCCc
Confidence 23355999997665432 222 33 67788999997654
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=4.6e-09 Score=89.67 Aligned_cols=172 Identities=15% Similarity=0.107 Sum_probs=101.8
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 68 CIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
||||||+|-||.+++++|+++|. .|+.+++-.... +.. .+.+ ...+|..+.+........ ...+
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~-~~~-~~~~------------~~~~~~~~~~~~~~~~~~-~~~~ 66 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT-KFV-NLVD------------LNIADYMDKEDFLIQIMA-GEEF 66 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGG-GGH-HHHT------------SCCSEEEEHHHHHHHHHT-TCCC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcc-hhh-cccc------------cchhhhccchHHHHHHhh-hhcc
Confidence 79999999999999999999997 577776322211 111 1111 012233333333222211 2234
Q ss_pred CCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccccc
Q 022369 147 GPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVSGR 226 (298)
Q Consensus 147 g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~ 226 (298)
..++++++.|+..... ....+...+.|+.++..+..++... +. ++++.||.....+..... ....
T Consensus 67 ~~~~~i~~~aa~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~----~i-~~v~~ss~~~~~~~~~~~----~~~~ 131 (307)
T d1eq2a_ 67 GDVEAIFHEGACSSTT------EWDGKYMMDNNYQYSKELLHYCLER----EI-PFLYASSAATYGGRTSDF----IESR 131 (307)
T ss_dssp SSCCEEEECCSCCCTT------CCCHHHHHHHTHHHHHHHHHHHHHH----TC-CEEEEEEGGGGTTCCSCB----CSSG
T ss_pred cchhhhhhhccccccc------ccccccccccccccccccccccccc----cc-cccccccccccccccccc----cccc
Confidence 5788888888753321 1234556677787877777665443 22 455555554444322111 1112
Q ss_pred cCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCccccCc
Q 022369 227 RKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVSTNV 273 (298)
Q Consensus 227 ~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T~~ 273 (298)
...++...|+.+|.+.+.+.+.+..+. ++.+..+.|..+..|.
T Consensus 132 ~~~~~~~~Y~~~K~~~e~~~~~~~~~~----~~~~~~~r~~~vyGp~ 174 (307)
T d1eq2a_ 132 EYEKPLNVYGYSKFLFDEYVRQILPEA----NSQIVGFRYFNVYGPR 174 (307)
T ss_dssp GGCCCSSHHHHHHHHHHHHHHHHGGGC----SSCEEEEEECEEESSS
T ss_pred cccccccccccccchhhhhcccccccc----ccccccccceeEeecc
Confidence 233556779999999999888876665 6788888888776664
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=98.88 E-value=2.4e-08 Score=87.48 Aligned_cols=151 Identities=18% Similarity=0.089 Sum_probs=91.3
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.|+++||||||.||.+++++|+++|++|+++.|+..+.... .+.. . ..+..+++|+.|..+... .+
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~--~~~~---~----~~v~~~~gD~~d~~~~~~---~a-- 68 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAE--ELQA---I----PNVTLFQGPLLNNVPLMD---TL-- 68 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHH--HHHT---S----TTEEEEESCCTTCHHHHH---HH--
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhh--hhcc---c----CCCEEEEeeCCCcHHHHH---HH--
Confidence 58999999999999999999999999999999987765431 2221 1 258899999998654322 21
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCcccccccc
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTEDMNVVS 224 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~ 224 (298)
+...|.++.+...... .|+....++..+ ..+.+..+++..||.......
T Consensus 69 -~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~a----a~~agv~~~v~~Ss~~~~~~~---------- 117 (350)
T d1xgka_ 69 -FEGAHLAFINTTSQAG----------------DEIAIGKDLADA----AKRAGTIQHYIYSSMPDHSLY---------- 117 (350)
T ss_dssp -HTTCSEEEECCCSTTS----------------CHHHHHHHHHHH----HHHHSCCSEEEEEECCCGGGT----------
T ss_pred -hcCCceEEeecccccc----------------hhhhhhhHHHHH----HHHhCCCceEEEeeccccccC----------
Confidence 2356776655432110 122222333333 333344577777876533221
Q ss_pred cccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEeeCCcccc
Q 022369 225 GRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCVSPGIVST 271 (298)
Q Consensus 225 ~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v~Pg~v~T 271 (298)
.......|..+|.....+.+. .++....+.|+....
T Consensus 118 ---~~~~~~~~~~~k~~~~~~~~~--------~~~~~~~vr~~~~~~ 153 (350)
T d1xgka_ 118 ---GPWPAVPMWAPKFTVENYVRQ--------LGLPSTFVYAGIYNN 153 (350)
T ss_dssp ---SSCCCCTTTHHHHHHHHHHHT--------SSSCEEEEEECEEGG
T ss_pred ---CcccchhhhhhHHHHHHHHHh--------hccCceeeeeceeec
Confidence 112234466777665543322 246666777776544
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=98.88 E-value=1.5e-08 Score=85.97 Aligned_cols=81 Identities=20% Similarity=0.225 Sum_probs=61.0
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH--HHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL--IQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
|.+|||||+|.||.+++++|+++|++|++++|+....... ...+.... . ..+.++.+|+.+.....+.++
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~-~----~~~~~~~~d~~~~~~~~~~~~--- 75 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFK-A----SGANIVHGSIDDHASLVEAVK--- 75 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHH-T----TTCEEECCCTTCHHHHHHHHH---
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhc-c----CCcEEEEeecccchhhhhhhh---
Confidence 6799999999999999999999999999999976543211 12222211 1 257888999999998776654
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
..+.+|++++.
T Consensus 76 ----~~~~vi~~~~~ 86 (307)
T d1qyca_ 76 ----NVDVVISTVGS 86 (307)
T ss_dssp ----TCSEEEECCCG
T ss_pred ----hceeeeecccc
Confidence 57888888875
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=98.35 E-value=2.1e-06 Score=67.92 Aligned_cols=86 Identities=15% Similarity=0.112 Sum_probs=65.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
++++|.|+|.|+ ||.|++++..|++.|. +++++.|+.++++++.+..++.... ........|+.+.+++.....
T Consensus 15 ~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 89 (182)
T d1vi2a1 15 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNEN----TDCVVTVTDLADQQAFAEALA 89 (182)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHH----SSCEEEEEETTCHHHHHHHHH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhh----cCcceEeeecccccchhhhhc
Confidence 678899999999 6999999999999998 8999999988777655433322111 134566789998887765543
Q ss_pred HHhcccCCccEEEEccCCC
Q 022369 141 AWNGRLGPLHVLINNAGIF 159 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~ 159 (298)
+.|++||+....
T Consensus 90 -------~~diiIN~Tp~G 101 (182)
T d1vi2a1 90 -------SADILTNGTKVG 101 (182)
T ss_dssp -------TCSEEEECSSTT
T ss_pred -------ccceeccccCCc
Confidence 689999998764
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=98.11 E-value=5.8e-06 Score=65.23 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=56.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+|.+|||+||++|+|...++.....|++|+.+++++++.+.+.+. +....+ |-.+++..++..+...
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~----------Ga~~vi---~~~~~~~~~~~~~~~~ 95 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI----------GFDAAF---NYKTVNSLEEALKKAS 95 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT----------TCSEEE---ETTSCSCHHHHHHHHC
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh----------hhhhhc---ccccccHHHHHHHHhh
Confidence 489999999999999999999999999999999998776554322 122233 3333333333333322
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
. ..+|+++++.|.
T Consensus 96 ~--~Gvd~v~D~vG~ 108 (182)
T d1v3va2 96 P--DGYDCYFDNVGG 108 (182)
T ss_dssp T--TCEEEEEESSCH
T ss_pred c--CCCceeEEecCc
Confidence 2 369999999883
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=8.2e-06 Score=63.66 Aligned_cols=77 Identities=19% Similarity=0.243 Sum_probs=58.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+++||.|||-|+ ||-+++++..|++.|++|.++.|+.++.+++.+.+.... .+..+ +..+.
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~-------~~~~~--~~~~~--------- 75 (170)
T d1nyta1 15 IRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTG-------SIQAL--SMDEL--------- 75 (170)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGS-------SEEEC--CSGGG---------
T ss_pred CCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcc-------ccccc--ccccc---------
Confidence 567899999997 789999999999999999999999999998887765421 23332 22211
Q ss_pred HhcccCCccEEEEccCCCC
Q 022369 142 WNGRLGPLHVLINNAGIFS 160 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~ 160 (298)
...+.|++||+...+.
T Consensus 76 ---~~~~~dliIN~Tp~G~ 91 (170)
T d1nyta1 76 ---EGHEFDLIINATSSGI 91 (170)
T ss_dssp ---TTCCCSEEEECCSCGG
T ss_pred ---cccccceeecccccCc
Confidence 1236899999986653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=6.3e-06 Score=64.46 Aligned_cols=79 Identities=9% Similarity=0.186 Sum_probs=55.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+|++|||+||++++|...++.....|++|+.+++++++.+.+. ++ |.. .+ .|.++++-.+++.+...
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~-~~---------Ga~-~v--i~~~~~~~~~~i~~~t~ 94 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVL-QN---------GAH-EV--FNHREVNYIDKIKKYVG 94 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HT---------TCS-EE--EETTSTTHHHHHHHHHC
T ss_pred CCCEEEEEeccccccccccccccccCccccccccccccccccc-cc---------Ccc-cc--cccccccHHHHhhhhhc
Confidence 4789999999999999999988889999999999877765442 21 111 12 36666554444433332
Q ss_pred cccCCccEEEEccC
Q 022369 144 GRLGPLHVLINNAG 157 (298)
Q Consensus 144 ~~~g~idilVnnag 157 (298)
. ..+|+++++.|
T Consensus 95 ~--~g~d~v~d~~g 106 (174)
T d1yb5a2 95 E--KGIDIIIEMLA 106 (174)
T ss_dssp T--TCEEEEEESCH
T ss_pred c--CCceEEeeccc
Confidence 2 25999999876
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=98.03 E-value=1.8e-05 Score=61.71 Aligned_cols=78 Identities=21% Similarity=0.317 Sum_probs=59.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
++++|.++|-|+ ||-+++++..|.+.+.+|.++.|+.++++.+.+.+... ..+..+..|-.
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~-------~~~~~~~~~~~----------- 75 (171)
T d1p77a1 15 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPY-------GNIQAVSMDSI----------- 75 (171)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGG-------SCEEEEEGGGC-----------
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhc-------cccchhhhccc-----------
Confidence 567899999876 78899999999998889999999999999998887542 24555554411
Q ss_pred HhcccCCccEEEEccCCCCC
Q 022369 142 WNGRLGPLHVLINNAGIFSI 161 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~ 161 (298)
.....|++||+......
T Consensus 76 ---~~~~~diiIN~tp~g~~ 92 (171)
T d1p77a1 76 ---PLQTYDLVINATSAGLS 92 (171)
T ss_dssp ---CCSCCSEEEECCCC---
T ss_pred ---cccccceeeeccccccc
Confidence 23579999999877543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=7.8e-06 Score=64.09 Aligned_cols=80 Identities=16% Similarity=0.212 Sum_probs=57.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+++||+||++|+|...++.....|++|+.+++++++.+.+.+ +- .. ++ +|.++++-.+++ .++.
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~-lG---------a~-~v--i~~~~~d~~~~v-~~~t 93 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK-AG---------AW-QV--INYREEDLVERL-KEIT 93 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-HT---------CS-EE--EETTTSCHHHHH-HHHT
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHh-cC---------Ce-EE--EECCCCCHHHHH-HHHh
Confidence 37899999999999999999999999999999999888766542 21 12 22 366665444443 3332
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
+ -..+|+++++.|.
T Consensus 94 ~-g~g~d~v~d~~g~ 107 (179)
T d1qora2 94 G-GKKVRVVYDSVGR 107 (179)
T ss_dssp T-TCCEEEEEECSCG
T ss_pred C-CCCeEEEEeCccH
Confidence 2 1368999998874
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.98 E-value=1.1e-05 Score=62.62 Aligned_cols=80 Identities=21% Similarity=0.197 Sum_probs=54.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCC--CCHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDL--LSLDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~--s~~~~v~~~~~~ 141 (298)
.|.+++|+| ++++|...++.+...|++|+++++++++++...+. +.... +..|- .+.+++ .++
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----------ga~~~-~~~~~~~~~~~~~---~~~ 90 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----------GADVT-LVVDPAKEEESSI---IER 90 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----------TCSEE-EECCTTTSCHHHH---HHH
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHHc----------CCcEE-Eeccccccccchh---hhh
Confidence 367899997 68999999998888999999999998887665332 11222 22332 333333 344
Q ss_pred HhcccC-CccEEEEccCC
Q 022369 142 WNGRLG-PLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g-~idilVnnag~ 158 (298)
+.+..| .+|++|.++|.
T Consensus 91 ~~~~~g~g~D~vid~~g~ 108 (170)
T d1e3ja2 91 IRSAIGDLPNVTIDCSGN 108 (170)
T ss_dssp HHHHSSSCCSEEEECSCC
T ss_pred hhcccccCCceeeecCCC
Confidence 444333 59999999985
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.95 E-value=2.8e-05 Score=59.83 Aligned_cols=85 Identities=25% Similarity=0.373 Sum_probs=61.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
+++++.++|.|+ |++|..+++.|.++|+ ++.++.|+.++.+++.+++. .... + .+++.+.+
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~-----------~~~~--~---~~~~~~~l- 82 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLG-----------GEAV--R---FDELVDHL- 82 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHT-----------CEEC--C---GGGHHHHH-
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhh-----------cccc--c---chhHHHHh-
Confidence 567899999998 9999999999999998 79999999999888877652 1221 2 22333332
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHH
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEE 174 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~ 174 (298)
.+.|++|++.+... ++ ++.+.++.
T Consensus 83 ------~~~Divi~atss~~--~i--i~~~~i~~ 106 (159)
T d1gpja2 83 ------ARSDVVVSATAAPH--PV--IHVDDVRE 106 (159)
T ss_dssp ------HTCSEEEECCSSSS--CC--BCHHHHHH
T ss_pred ------ccCCEEEEecCCCC--cc--ccHhhhHH
Confidence 26899999988632 22 45555553
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.93 E-value=2.3e-05 Score=60.86 Aligned_cols=75 Identities=20% Similarity=0.209 Sum_probs=56.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+|.++|.|| |.+|..+|+.|+++|++|++++|+.++++++.+++ ........+..+.......+.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~----------~~~~~~~~~~~~~~~~~~~i~---- 66 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV----------QHSTPISLDVNDDAALDAEVA---- 66 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC----------TTEEEEECCTTCHHHHHHHHT----
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc----------cccccccccccchhhhHhhhh----
Confidence 588999887 99999999999999999999999999888876443 234555567766665555443
Q ss_pred ccCCccEEEEccC
Q 022369 145 RLGPLHVLINNAG 157 (298)
Q Consensus 145 ~~g~idilVnnag 157 (298)
..|.++....
T Consensus 67 ---~~~~~i~~~~ 76 (182)
T d1e5qa1 67 ---KHDLVISLIP 76 (182)
T ss_dssp ---TSSEEEECSC
T ss_pred ---ccceeEeecc
Confidence 4566665443
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.91 E-value=9.1e-06 Score=63.89 Aligned_cols=79 Identities=14% Similarity=0.100 Sum_probs=54.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+|++|||+||+|++|...++.+...|++|+++++++++.+.+ ++. |.. .+ .|-.+++-.+++ .+..
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l----~~~------Ga~-~v--i~~~~~~~~~~v-~~~t 90 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML----SRL------GVE-YV--GDSRSVDFADEI-LELT 90 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH----HTT------CCS-EE--EETTCSTHHHHH-HHHT
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeeccccccccc----ccc------ccc-cc--ccCCccCHHHHH-HHHh
Confidence 378999999999999999998888999999999997766443 221 112 22 344554433333 2222
Q ss_pred cccCCccEEEEccC
Q 022369 144 GRLGPLHVLINNAG 157 (298)
Q Consensus 144 ~~~g~idilVnnag 157 (298)
.. ..+|+++++.|
T Consensus 91 ~~-~g~d~v~d~~g 103 (183)
T d1pqwa_ 91 DG-YGVDVVLNSLA 103 (183)
T ss_dssp TT-CCEEEEEECCC
T ss_pred CC-CCEEEEEeccc
Confidence 21 26999999987
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=0.00012 Score=56.75 Aligned_cols=81 Identities=19% Similarity=0.115 Sum_probs=57.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|.+|+|.|+ +++|...+..+...|+ +|+++++++++++... ++ | --+++..+-.+..+..+.++.-
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~-~~---------G-a~~~~~~~~~~~~~~~~~~~~~ 93 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EI---------G-ADLVLQISKESPQEIARKVEGQ 93 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HT---------T-CSEEEECSSCCHHHHHHHHHHH
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHH-Hh---------C-Cccccccccccccccccccccc
Confidence 3678999986 9999999999999999 8999999988887553 32 1 1234444545555555554443
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
.. ..+|++|.+.|.
T Consensus 94 ~g--~g~Dvvid~~G~ 107 (171)
T d1pl8a2 94 LG--CKPEVTIECTGA 107 (171)
T ss_dssp HT--SCCSEEEECSCC
T ss_pred CC--CCceEEEeccCC
Confidence 32 269999999985
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.79 E-value=7.8e-05 Score=58.41 Aligned_cols=82 Identities=10% Similarity=0.053 Sum_probs=55.0
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|.+|+|+|+ +++|...+..+...|+ +|+++++++++++.+ +++ |.. .++...=.+..+..+.+.+.
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a-~~l---------Ga~-~vi~~~~~~~~~~~~~i~~~ 95 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLA-EEI---------GAD-LTLNRRETSVEERRKAIMDI 95 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH-HHT---------TCS-EEEETTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECC-Cccchhheeccccccccccccccccccccccc-ccc---------cce-EEEeccccchHHHHHHHHHh
Confidence 4789999997 7999999999988998 899999999888654 232 112 23322223333333333433
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
... ..+|++|.++|.
T Consensus 96 ~~~-~g~Dvvid~vG~ 110 (182)
T d1vj0a2 96 THG-RGADFILEATGD 110 (182)
T ss_dssp TTT-SCEEEEEECSSC
T ss_pred hCC-CCceEEeecCCc
Confidence 322 249999999985
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=97.73 E-value=3.4e-05 Score=61.01 Aligned_cols=87 Identities=15% Similarity=0.128 Sum_probs=56.6
Q ss_pred CC-EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DL-TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k-~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
|. +++++||++|+|.+.++..-..|++||.+.|+.++.++..+.+++... .. ++.-|-.+..+..+.++++.
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGa------d~-vi~~~~~~~~~~~~~v~~~~ 101 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGA------TQ-VITEDQNNSREFGPTIKEWI 101 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTC------SE-EEEHHHHHCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccc------cE-EEeccccchhHHHHHHHHHH
Confidence 44 455589999999999888888899999999998888887777766432 12 22221111122233333333
Q ss_pred c-ccCCccEEEEccCC
Q 022369 144 G-RLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~-~~g~idilVnnag~ 158 (298)
. ..+.+|+++++.|.
T Consensus 102 ~~~g~~vdvv~D~vg~ 117 (189)
T d1gu7a2 102 KQSGGEAKLALNCVGG 117 (189)
T ss_dssp HHHTCCEEEEEESSCH
T ss_pred hhccCCceEEEECCCc
Confidence 2 33479999998763
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=3.1e-05 Score=51.85 Aligned_cols=42 Identities=26% Similarity=0.344 Sum_probs=37.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
++.++||+||++|.|....+.+...|++|+.+.+++++.+-+
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~ 72 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL 72 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH
Confidence 467899999999999999998888899999999998887665
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.69 E-value=5.6e-05 Score=56.06 Aligned_cols=71 Identities=14% Similarity=0.217 Sum_probs=56.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
.++|.|+ |-+|+.+|+.|.+.|..|++++++++.++.+.+++ ...++..|.++++..+++ ..
T Consensus 2 ~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-----------~~~vi~Gd~~~~~~l~~~------~i 63 (132)
T d1lssa_ 2 YIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-----------DALVINGDCTKIKTLEDA------GI 63 (132)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------SSEEEESCTTSHHHHHHT------TT
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-----------hhhhccCcccchhhhhhc------Ch
Confidence 5889998 89999999999999999999999998888765431 456888999999966544 11
Q ss_pred CCccEEEEc
Q 022369 147 GPLHVLINN 155 (298)
Q Consensus 147 g~idilVnn 155 (298)
...|.+|..
T Consensus 64 ~~a~~vv~~ 72 (132)
T d1lssa_ 64 EDADMYIAV 72 (132)
T ss_dssp TTCSEEEEC
T ss_pred hhhhhhccc
Confidence 256766653
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.65 E-value=0.00035 Score=52.68 Aligned_cols=115 Identities=8% Similarity=0.060 Sum_probs=70.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.+.+.|.|+ |.+|..+|..|+.+| .+|+++|+++++++....++.......+ .......|. +
T Consensus 5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~---~~~~~~~d~---~--------- 68 (146)
T d1ez4a1 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTA---PKKIYSGEY---S--------- 68 (146)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSC---CCEEEECCG---G---------
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccC---CceEeeccH---H---------
Confidence 346778896 889999999999988 4899999999888877777765332221 233444453 1
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCC-CeEEEEcC
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSP-SRIINVNS 207 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~-g~Iv~isS 207 (298)
...+-|++|.+||..... .++-.+.+..| ..+.+...+.+.+... +-++++|.
T Consensus 69 --~~~~adivvitag~~~~~------g~~r~~l~~~N----~~i~~~~~~~i~~~~p~aivivvtN 122 (146)
T d1ez4a1 69 --DCKDADLVVITAGAPQKP------GESRLDLVNKN----LNILSSIVKPVVDSGFDGIFLVAAN 122 (146)
T ss_dssp --GGTTCSEEEECCCC----------------CHHHH----HHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred --HhccccEEEEecccccCC------CCCHHHHHHHH----HHHHHHHHHHHhhcCCCcEEEEeCC
Confidence 123689999999975321 12223334444 3566666666666554 44555544
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.61 E-value=7.7e-05 Score=57.93 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=37.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
+|+++||+||++++|...++.+...|++|+.+++++++.+..
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~ 68 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP 68 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH
T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccccccccccc
Confidence 478999999999999999988888899999999998877655
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.60 E-value=0.00081 Score=51.28 Aligned_cols=125 Identities=15% Similarity=0.121 Sum_probs=79.7
Q ss_pred CCCCCCCCCCCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHH
Q 022369 56 NPLPLPPVNDLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLD 133 (298)
Q Consensus 56 ~~~~~~~~~~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~ 133 (298)
...+...++...+.|.|+ |.+|..+|+.|+.+|. +++++|++++.++..+.++.......+ ........|..
T Consensus 10 ~~~~~~~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~--~~~~~~~~d~~--- 83 (159)
T d2ldxa1 10 NLVPEDKLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLS--TPKIVFGKDYN--- 83 (159)
T ss_dssp ECSSCCCCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCS--CCEEEEESSGG---
T ss_pred hhcccccCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcC--CCeEEeccchh---
Confidence 344455555556778886 9999999999999975 899999999988888778775432211 22333333432
Q ss_pred HHHHHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcC
Q 022369 134 SVVRFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNS 207 (298)
Q Consensus 134 ~v~~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS 207 (298)
....-|++|..||...... .+.+ +.++ ....+.+.+.+.+.+.. .+.++++|.
T Consensus 84 -----------~~~~adivvitag~~~~~~---~~R~---dll~----~N~~i~~~i~~~i~~~~p~~ivivvtN 137 (159)
T d2ldxa1 84 -----------VSANSKLVIITAGARMVSG---QTRL---DLLQ----RNVAIMKAIVPGVIQNSPDCKIIVVTN 137 (159)
T ss_dssp -----------GGTTEEEEEECCSCCCCTT---TCSS---CTTH----HHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred -----------hhccccEEEEecccccCCC---CCHH---HHHH----HHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 1247899999999754322 1111 1122 23456777788777654 556666665
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.59 E-value=0.00061 Score=51.17 Aligned_cols=117 Identities=15% Similarity=0.170 Sum_probs=72.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA--HVVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.+.|.||+|.+|.++|..++.+|. +++++|+++ ++++....++...........++.....+ +.+
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~--d~~--------- 70 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDE--NLR--------- 70 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETT--CGG---------
T ss_pred EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcc--hHH---------
Confidence 388999999999999999999984 999999886 34555555665533322222233333322 111
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVN 206 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~is 206 (298)
...+-|++|.+||.... ...+. .+.++.|. .+.+.+.+.+.+.....|+.+|
T Consensus 71 --~l~~aDvVVitAG~~~~---~g~sR---~dl~~~Na----~iv~~i~~~i~~~~~~~iivVt 122 (145)
T d1hyea1 71 --IIDESDVVIITSGVPRK---EGMSR---MDLAKTNA----KIVGKYAKKIAEICDTKIFVIT 122 (145)
T ss_dssp --GGTTCSEEEECCSCCCC---TTCCH---HHHHHHHH----HHHHHHHHHHHHHCCCEEEECS
T ss_pred --HhccceEEEEecccccC---CCCCh---hhhhhhhH----HHHHHHHHHHhccCCCeEEEEc
Confidence 12368999999997532 12232 23444443 4566666666665555565553
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.56 E-value=2.7e-05 Score=61.04 Aligned_cols=104 Identities=12% Similarity=0.035 Sum_probs=65.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+|.+|||+||+||.|....+.....|++|+.+++++++.+.+.+ + |....+ |-.+. ..+..+.+
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~-l---------Ga~~vi---~~~~~--~~~~~~~~- 94 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV-L---------GAKEVL---AREDV--MAERIRPL- 94 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH-T---------TCSEEE---ECC-----------C-
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh-c---------ccceee---ecchh--HHHHHHHh-
Confidence 47899999999999999998888899999999999888765532 1 112222 22221 12222222
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCcccc
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYV 212 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~ 212 (298)
.-+.+|+++++.|-.. +++ .+..|+. +|++|.++...+..
T Consensus 95 -~~~gvD~vid~vgg~~-----------~~~---------------~l~~l~~--~Griv~~G~~~g~~ 134 (176)
T d1xa0a2 95 -DKQRWAAAVDPVGGRT-----------LAT---------------VLSRMRY--GGAVAVSGLTGGAE 134 (176)
T ss_dssp -CSCCEEEEEECSTTTT-----------HHH---------------HHHTEEE--EEEEEECSCCSSSC
T ss_pred -hccCcCEEEEcCCchh-----------HHH---------------HHHHhCC--CceEEEeecccCcc
Confidence 1247999999998521 222 2333443 68999999876443
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.56 E-value=0.00099 Score=50.17 Aligned_cols=119 Identities=11% Similarity=0.020 Sum_probs=75.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
-.++.+.|.|+ |.+|..+|..++.+|. +|+++|+++++++....++.....-.. ..+.+...|..
T Consensus 4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~--~~~~~~~~d~~---------- 70 (148)
T d1ldna1 4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAP--KPVDIWHGDYD---------- 70 (148)
T ss_dssp TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSS--SCCEEEECCGG----------
T ss_pred CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccC--CCeEEEECCHH----------
Confidence 34567888897 9999999999999885 899999999998877777765432211 23344444431
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-CCCeEEEEcCC
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-SPSRIINVNSV 208 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~~g~Iv~isS~ 208 (298)
...+-|++|.++|...... .+ -.+.+..| ..+.+.+.+.+.+. ..+.++++|..
T Consensus 71 ----~l~daDvvvitag~~~~~~---~~---R~dl~~~N----~~i~~~i~~~i~~~~p~a~~ivvtNP 125 (148)
T d1ldna1 71 ----DCRDADLVVICAGANQKPG---ET---RLDLVDKN----IAIFRSIVESVMASGFQGLFLVATNP 125 (148)
T ss_dssp ----GTTTCSEEEECCSCCCCTT---TC---SGGGHHHH----HHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred ----HhccceeEEEecccccccC---cc---hhHHHHHH----HHHHHHHHHHHHhhCCCceEEEecCc
Confidence 1236799999999754211 11 12233334 34555666666554 35677777663
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=97.55 E-value=0.00011 Score=56.85 Aligned_cols=80 Identities=10% Similarity=0.087 Sum_probs=55.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|.+++|.|+++++|...+..+...|+ +|+++++++++++...+ + |.. .++ |.++++..++..+..
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~-~---------Ga~-~~i--~~~~~~~~~~~~~~~ 93 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR-A---------GAD-YVI--NASMQDPLAEIRRIT 93 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH-H---------TCS-EEE--ETTTSCHHHHHHHHT
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHH-c---------CCc-eee--ccCCcCHHHHHHHHh
Confidence 368999999999999999999988885 89999999887666532 2 112 222 334444344443332
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
.. +.+|+++.++|.
T Consensus 94 ~~--~~~d~vid~~g~ 107 (170)
T d1jvba2 94 ES--KGVDAVIDLNNS 107 (170)
T ss_dssp TT--SCEEEEEESCCC
T ss_pred hc--ccchhhhccccc
Confidence 21 359999999885
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=97.54 E-value=9.9e-05 Score=57.41 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=55.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|.+|+|.|+ +|+|...+..+...|+ +|+++++++++.+...+. +....+...| ..+.+.+..+..
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----------Ga~~~i~~~~--~~~~~~~~~~~~ 94 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----------GATECVNPQD--YKKPIQEVLTEM 94 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----------TCSEEECGGG--CSSCHHHHHHHH
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----------CCeeEEecCC--chhHHHHHHHHH
Confidence 4789999999 6899999999999986 899999999987765332 1122211112 223344444444
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
.. +.+|++|.+.|.
T Consensus 95 ~~--~G~D~vid~~G~ 108 (176)
T d2jhfa2 95 SN--GGVDFSFEVIGR 108 (176)
T ss_dssp TT--SCBSEEEECSCC
T ss_pred hc--CCCCEEEecCCc
Confidence 33 479999999986
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=97.52 E-value=0.00026 Score=54.65 Aligned_cols=45 Identities=24% Similarity=0.450 Sum_probs=38.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~ 109 (298)
++|.|+|-|+ ||.+++++..|.+.|+ +|.++.|+.++.+.+.+.+
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~ 61 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY 61 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhh
Confidence 3577889887 8999999999999997 8999999999888876554
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.46 E-value=0.00083 Score=50.49 Aligned_cols=119 Identities=12% Similarity=0.118 Sum_probs=73.7
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
|.+.|.|+ |.+|..+|..++.+|. +++++|+++++++....++.......+ ........|. +
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~--~~~~~~~~d~---~---------- 65 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLE--AHGNIVINDW---A---------- 65 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSS--SCCEEEESCG---G----------
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccC--CccceeccCH---H----------
Confidence 56778895 8999999999999884 899999999998887777776543322 2233333343 2
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcC
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNS 207 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS 207 (298)
..-+-|++|.+||...... +-..++-.+.++.| ..+.+.+.+.+.+.. .+-++++|-
T Consensus 66 -~l~~adiVVitaG~~~~~~--~~~g~~R~~l~~~N----~~i~~~i~~~i~~~~p~aivivvtN 123 (146)
T d1hyha1 66 -ALADADVVISTLGNIKLQQ--DNPTGDRFAELKFT----SSMVQSVGTNLKESGFHGVLVVISN 123 (146)
T ss_dssp -GGTTCSEEEECCSCGGGTC---------CTTHHHH----HHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred -HhccccEEEEecccccccc--ccCCccHHHHHHHH----HHHHHHHHHHHhhcCCCeEEEEecC
Confidence 1236799999999753211 00011112233334 456677777777655 455555555
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.38 E-value=0.00017 Score=56.14 Aligned_cols=79 Identities=10% Similarity=0.015 Sum_probs=53.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|.+|+|.|+ +|+|...++.+...|+ +|+.+++++++++... ++- -.++ +|..+++..+++ .++
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~-~lG----------a~~~--i~~~~~~~~~~v-~~~ 91 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK-FYG----------ATDI--LNYKNGHIEDQV-MKL 91 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH-HHT----------CSEE--ECGGGSCHHHHH-HHH
T ss_pred CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHH-hhC----------cccc--ccccchhHHHHH-HHH
Confidence 3678999986 8999999988888998 7999999988866653 221 1122 344443333333 333
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
... ..+|++|.++|.
T Consensus 92 t~g-~G~D~vid~~g~ 106 (174)
T d1jqba2 92 TNG-KGVDRVIMAGGG 106 (174)
T ss_dssp TTT-SCEEEEEECSSC
T ss_pred hhc-cCcceEEEccCC
Confidence 222 249999999995
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=0.00042 Score=56.05 Aligned_cols=81 Identities=17% Similarity=0.246 Sum_probs=56.7
Q ss_pred CCCCCCEEEEeCC----------------CCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEE
Q 022369 61 PPVNDLTCIVTGS----------------TSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEA 124 (298)
Q Consensus 61 ~~~~~k~vlITGa----------------s~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (298)
.+++|+.+|||+| ||-.|.++|+++.++|++|.++.-...- ..+..+..
T Consensus 2 ~dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~---------------~~p~~~~~ 66 (223)
T d1u7za_ 2 NDLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSL---------------PTPPFVKR 66 (223)
T ss_dssp CTTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCC---------------CCCTTEEE
T ss_pred cccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhccccc---------------Cccccccc
Confidence 5789999999987 6789999999999999999998754210 01123333
Q ss_pred EEcCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCC
Q 022369 125 MELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSI 161 (298)
Q Consensus 125 ~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~ 161 (298)
+ .+...++..+.+.+. +...|++|.+|.++-.
T Consensus 67 ~--~~~t~~~m~~~~~~~---~~~~D~~i~aAAvsDf 98 (223)
T d1u7za_ 67 V--DVMTALEMEAAVNAS---VQQQNIFIGCAAVADY 98 (223)
T ss_dssp E--ECCSHHHHHHHHHHH---GGGCSEEEECCBCCSE
T ss_pred c--eehhhHHHHHHHHhh---hccceeEeeeechhhh
Confidence 3 444555555555443 3467999999998753
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.35 E-value=0.00012 Score=57.54 Aligned_cols=105 Identities=17% Similarity=0.174 Sum_probs=62.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCE-EEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAH-VVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~-Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.+++|||+||+||+|...++..-..|++ |+.++++.++...+.+++. .. . ..|..+++ ..+.++++
T Consensus 30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~g---------ad-~--vi~~~~~~-~~~~~~~~ 96 (187)
T d1vj1a2 30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELG---------FD-A--AVNYKTGN-VAEQLREA 96 (187)
T ss_dssp SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSC---------CS-E--EEETTSSC-HHHHHHHH
T ss_pred CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhccc---------ce-E--Eeeccchh-HHHHHHHH
Confidence 3479999999999999999888788996 4456777666666654431 11 2 23444443 33334444
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccc
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHY 211 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~ 211 (298)
.. ..+|+++.+.|- +.++ ..+..++ .+|++|.+.+..++
T Consensus 97 ~~--~GvDvv~D~vGg-----------~~~~---------------~~~~~l~--~~G~iv~~G~~s~~ 135 (187)
T d1vj1a2 97 CP--GGVDVYFDNVGG-----------DISN---------------TVISQMN--ENSHIILCGQISQY 135 (187)
T ss_dssp CT--TCEEEEEESSCH-----------HHHH---------------HHHTTEE--EEEEEEEC------
T ss_pred hc--cCceEEEecCCc-----------hhHH---------------HHhhhcc--ccccEEEecccccc
Confidence 33 259999999873 1222 2333443 36899998876654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.31 E-value=0.00089 Score=51.39 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=35.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.|.+++|.|+ +++|...++.+...|++|+++++++++++..
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a 67 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDA 67 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHH
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHh
Confidence 4789999987 8999998887778899999999999988765
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.28 E-value=0.0043 Score=47.10 Aligned_cols=120 Identities=14% Similarity=0.067 Sum_probs=78.0
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++.+.+.|.|+ |.+|.++|..++.+|. +++++|++++..+..+.++.....-.+ ........|..+
T Consensus 17 ~~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~--~~~~~~~~d~~~-------- 85 (160)
T d1i0za1 17 TVPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQ--TPKIVADKDYSV-------- 85 (160)
T ss_dssp CCCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCC--CSEEEECSSGGG--------
T ss_pred cCCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccC--CCeEEeccchhh--------
Confidence 444567888896 8999999999999986 899999999988877777765322111 122223333332
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSV 208 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~ 208 (298)
..+-|++|..||..... ..+. .+.+..| ..+.+.+.+.+.+.. ++-++++|..
T Consensus 86 ------~~~adiVVitAg~~~~~---g~tR---~~l~~~N----~~i~~~i~~~i~~~~p~aiiivvtNP 139 (160)
T d1i0za1 86 ------TANSKIVVVTAGVRQQE---GESR---LNLVQRN----VNVFKFIIPQIVKYSPDCIIIVVSNP 139 (160)
T ss_dssp ------GTTCSEEEECCSCCCCT---TCCG---GGGHHHH----HHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred ------cccccEEEEecCCcccc---Ccch---HHHHHHH----HHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence 23679999999975321 1222 2333333 457777777777754 4566666663
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.26 E-value=0.00042 Score=53.85 Aligned_cols=50 Identities=26% Similarity=0.470 Sum_probs=43.8
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhh
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEW 113 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~ 113 (298)
+++||.|||.|+ ||.+++++..|.+.| +|.++.|+.++.+++.+.+....
T Consensus 15 ~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~ 64 (177)
T d1nvta1 15 RVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKL 64 (177)
T ss_dssp CCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhh
Confidence 478999999977 589999999998877 99999999999999998887654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.26 E-value=0.00038 Score=53.75 Aligned_cols=79 Identities=14% Similarity=0.175 Sum_probs=52.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCC-CHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLL-SLDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s-~~~~v~~~~~~ 141 (298)
.|.+|+|.|+ +|+|...+..+...|+ +|+.+++++++++.. +++-. . .++ |.. +.+.+.+.++.
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~a-k~lGa---------~-~~i--~~~~~~~~~~~~~~~ 93 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARA-KEFGA---------T-ECI--NPQDFSKPIQEVLIE 93 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHH-HHHTC---------S-EEE--CGGGCSSCHHHHHHH
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHHH-HHhCC---------c-EEE--eCCchhhHHHHHHHH
Confidence 4789999998 5999999999999997 677777887776544 33311 1 222 222 22334444454
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
... +.+|++|.+.|.
T Consensus 94 ~~~--~g~D~vid~~G~ 108 (176)
T d2fzwa2 94 MTD--GGVDYSFECIGN 108 (176)
T ss_dssp HTT--SCBSEEEECSCC
T ss_pred HcC--CCCcEeeecCCC
Confidence 433 369999999984
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=97.24 E-value=0.00047 Score=53.56 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=53.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHH-HHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDS-VVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~-v~~~~~~ 141 (298)
.|.+|+|.|+ +|+|...+..+...|+ +|+.+++++++++-..+. - ....+ |..+.+. .+...+.
T Consensus 29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~-G---------A~~~i---n~~~~~~~~~~~~~~ 94 (176)
T d1d1ta2 29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV-G---------ATECI---SPKDSTKPISEVLSE 94 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH-T---------CSEEE---CGGGCSSCHHHHHHH
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc-C---------CcEEE---CccccchHHHHHHHH
Confidence 4789999986 8999999999999996 899999999998865433 1 12222 2222221 2222222
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
... +.+|++|.+.|.
T Consensus 95 ~~g--~G~d~vi~~~g~ 109 (176)
T d1d1ta2 95 MTG--NNVGYTFEVIGH 109 (176)
T ss_dssp HHT--SCCCEEEECSCC
T ss_pred hcc--ccceEEEEeCCc
Confidence 222 369999999985
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.17 E-value=0.00019 Score=53.08 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=53.1
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|.++|.|+ |-+|..+|+.|.++|..|++++.+++.++++.++ ....+..|.++++.++++-
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~------------~~~~~~gd~~~~~~l~~a~------ 61 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY------------ATHAVIANATEENELLSLG------ 61 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTT------------CSEEEECCTTCTTHHHHHT------
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHh------------CCcceeeecccchhhhccC------
Confidence 34666666 7899999999999999999999998887776322 2345678999988665431
Q ss_pred cCCccEEEEccC
Q 022369 146 LGPLHVLINNAG 157 (298)
Q Consensus 146 ~g~idilVnnag 157 (298)
..+.|.+|...+
T Consensus 62 i~~a~~vi~~~~ 73 (134)
T d2hmva1 62 IRNFEYVIVAIG 73 (134)
T ss_dssp GGGCSEEEECCC
T ss_pred CccccEEEEEcC
Confidence 124677766554
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.15 E-value=0.0013 Score=50.66 Aligned_cols=78 Identities=10% Similarity=0.092 Sum_probs=51.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCE-EEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAH-VVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~-Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|.+++|.|+ +++|...+..+...|++ |+++++++++++.+. ++- ...++ |..+++ +.+.++++
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~-~~G----------a~~~i--~~~~~~-~~~~i~~~ 92 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAK-QLG----------ATHVI--NSKTQD-PVAAIKEI 92 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH-HHT----------CSEEE--ETTTSC-HHHHHHHH
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHH-HcC----------CeEEE--eCCCcC-HHHHHHHH
Confidence 3788999987 89999999988888985 556677877766653 321 12233 444433 33333444
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
.. +.+|++|.+.|.
T Consensus 93 t~--gg~D~vid~~G~ 106 (174)
T d1f8fa2 93 TD--GGVNFALESTGS 106 (174)
T ss_dssp TT--SCEEEEEECSCC
T ss_pred cC--CCCcEEEEcCCc
Confidence 32 479999999985
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=97.12 E-value=0.00088 Score=51.58 Aligned_cols=77 Identities=16% Similarity=0.114 Sum_probs=50.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
|.+++|.|+ +++|...+..+...|+ +|+.+++++++++...+. + ...++ |.+ .+.+++..+...
T Consensus 33 g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----------g-a~~~i--~~~-~~~~~~~~~~~~ 97 (172)
T d1h2ba2 33 GAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----------G-ADHVV--DAR-RDPVKQVMELTR 97 (172)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----------T-CSEEE--ETT-SCHHHHHHHHTT
T ss_pred CCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----------c-cceee--cCc-ccHHHHHHHhhC
Confidence 688999886 9999999998888887 777788988776655321 1 11222 322 233444443322
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
. ..+|++|.++|.
T Consensus 98 ~--~g~d~vid~~g~ 110 (172)
T d1h2ba2 98 G--RGVNVAMDFVGS 110 (172)
T ss_dssp T--CCEEEEEESSCC
T ss_pred C--CCceEEEEecCc
Confidence 2 259999999995
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=97.10 E-value=0.00068 Score=52.54 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=52.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCC-HHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLS-LDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~-~~~v~~~~~~ 141 (298)
.|.+|+|.|+ +|||...+..+...|+ +|+++++++++++... ++ |.. .++ |... .+...+..+.
T Consensus 28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~-~~---------Ga~-~~i--~~~~~~~~~~~~~~~ 93 (174)
T d1e3ia2 28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK-AL---------GAT-DCL--NPRELDKPVQDVITE 93 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH-HT---------TCS-EEE--CGGGCSSCHHHHHHH
T ss_pred CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHHH-Hh---------CCC-ccc--CCccchhhhhhhHhh
Confidence 4789999975 9999999999999998 6888899988875443 22 111 222 2221 1223333333
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
... +.+|++|.++|.
T Consensus 94 ~~~--~G~d~vie~~G~ 108 (174)
T d1e3ia2 94 LTA--GGVDYSLDCAGT 108 (174)
T ss_dssp HHT--SCBSEEEESSCC
T ss_pred hhc--CCCcEEEEeccc
Confidence 322 479999999995
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=97.10 E-value=0.00023 Score=55.02 Aligned_cols=42 Identities=33% Similarity=0.416 Sum_probs=37.2
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELI 106 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~ 106 (298)
+.+|||+||++|+|...++.....|++|+.+++++++.+.+.
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~ 65 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLK 65 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHH
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHH
Confidence 568999999999999999887788999999999988877663
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.09 E-value=0.0037 Score=46.36 Aligned_cols=112 Identities=17% Similarity=0.058 Sum_probs=71.7
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 68 CIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
+.|.|+ |.+|..+|..++.+|. +++++|+++++++....++....+-. ........|. ++
T Consensus 3 I~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~---~~~~~~~~~~---~~----------- 64 (140)
T d1a5za1 3 IGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFT---RRANIYAGDY---AD----------- 64 (140)
T ss_dssp EEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGS---CCCEEEECCG---GG-----------
T ss_pred EEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccccc---ccccccCCcH---HH-----------
Confidence 556686 8899999999998874 89999999998887777766643322 1333333332 21
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcC
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNS 207 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS 207 (298)
+.+-|++|.+||..... ..+. .+.+..| ..+.+.+.+.+.+.. .+.++++|.
T Consensus 65 ~~~adivvitag~~~~~---g~~r---~dl~~~N----~~I~~~i~~~i~~~~p~aivivvtN 117 (140)
T d1a5za1 65 LKGSDVVIVAAGVPQKP---GETR---LQLLGRN----ARVMKEIARNVSKYAPDSIVIVVTN 117 (140)
T ss_dssp GTTCSEEEECCCCCCCS---SCCH---HHHHHHH----HHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred hcCCCEEEEecccccCC---Ccch---hhhhccc----cchHHHHHHHHHhcCCCcEEEEeCC
Confidence 13679999999975421 1222 2334444 346677777777644 455555554
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.09 E-value=0.00033 Score=54.61 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=36.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
+.++||+||+||+|...++.....|++|+.+++++++.+.+
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~ 72 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL 72 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHH
Confidence 46899999999999999988888999999999999987655
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.03 E-value=0.0017 Score=48.52 Aligned_cols=112 Identities=12% Similarity=0.048 Sum_probs=65.6
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 68 CIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
+.|.|+ |.+|..+|..++.+|. +++++|++++.++....++....... ........| ++ .
T Consensus 4 I~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~---~~~~~~~~~---~~-----------~ 65 (142)
T d1y6ja1 4 VAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFM---GQMSLYAGD---YS-----------D 65 (142)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCT---TCEEEC--C---GG-----------G
T ss_pred EEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccC---CCeeEeeCc---HH-----------H
Confidence 555586 9999999999999986 89999999988776666665422211 123322222 21 1
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcC
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNS 207 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS 207 (298)
...-|++|..||..... . +.-.+.+..| ..+.+.+.+.+.+.. ++.++++|.
T Consensus 66 ~~~adivvitag~~~~~---~---~~r~~l~~~N----~~i~~~i~~~i~~~~p~ai~ivvtN 118 (142)
T d1y6ja1 66 VKDCDVIVVTAGANRKP---G---ETRLDLAKKN----VMIAKEVTQNIMKYYNHGVILVVSN 118 (142)
T ss_dssp GTTCSEEEECCCC------------CHHHHHHHH----HHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred hCCCceEEEecccccCc---C---cchhHHhhHH----HHHHHHHHHHhhccCCCceEEEecC
Confidence 24679999999975321 1 1223344444 356667777777643 456666655
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.98 E-value=0.00086 Score=51.89 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=54.1
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHH-HHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLD-SVVRFSE 140 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~-~v~~~~~ 140 (298)
-.|.+|+|.|+ +|+|...+..+...|+ +|+.+++++++++...+ + |.. .+ .|.++.+ .+.+..+
T Consensus 26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~-l---------Ga~-~~--i~~~~~d~~~~~~~~ 91 (174)
T d1p0fa2 26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE-L---------GAT-EC--LNPKDYDKPIYEVIC 91 (174)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH-T---------TCS-EE--ECGGGCSSCHHHHHH
T ss_pred CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHH-c---------CCc-EE--EcCCCchhHHHHHHH
Confidence 34789999986 8999999999999997 89999999998876632 2 111 22 2333322 1333333
Q ss_pred HHhcccCCccEEEEccCC
Q 022369 141 AWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~ 158 (298)
.... +.+|++|.++|.
T Consensus 92 ~~~~--~G~d~vid~~g~ 107 (174)
T d1p0fa2 92 EKTN--GGVDYAVECAGR 107 (174)
T ss_dssp HHTT--SCBSEEEECSCC
T ss_pred HhcC--CCCcEEEEcCCC
Confidence 3322 479999999885
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=96.97 E-value=0.0009 Score=51.57 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=51.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHH-HHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDS-VVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~-v~~~~~~ 141 (298)
.|.+|+|.|+ +|+|...+..++..|+ +|+.+++++++++...+. | -.+++ |..+.+. +++..+.
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~----------G-Ad~~i--n~~~~~~~~~~~~~~ 93 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF----------G-ATDFV--NPNDHSEPISQVLSK 93 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----------T-CCEEE--CGGGCSSCHHHHHHH
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHHc----------C-CcEEE--cCCCcchhHHHHHHh
Confidence 4688999985 7788888888888877 788899999888765322 1 12222 3333222 2333333
Q ss_pred HhcccCCccEEEEccCC
Q 022369 142 WNGRLGPLHVLINNAGI 158 (298)
Q Consensus 142 ~~~~~g~idilVnnag~ 158 (298)
... +.+|+++.+.|.
T Consensus 94 ~~~--~G~d~vid~~G~ 108 (175)
T d1cdoa2 94 MTN--GGVDFSLECVGN 108 (175)
T ss_dssp HHT--SCBSEEEECSCC
T ss_pred hcc--CCcceeeeecCC
Confidence 322 379999999985
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.97 E-value=0.0025 Score=47.58 Aligned_cols=115 Identities=12% Similarity=0.131 Sum_probs=67.7
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+.|.||+|.+|.++|..|+.+|. +++++|.++.+.+. .++... .. ....... .. ..+..+.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a--~Dl~~~--~~--~~~~~~~-~~---~~~~~~~~----- 66 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVA--ADLSHI--ET--RATVKGY-LG---PEQLPDCL----- 66 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHH--HHHTTS--SS--SCEEEEE-ES---GGGHHHHH-----
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhh--HHHhhh--hh--hcCCCeE-Ec---CCChHHHh-----
Confidence 478999999999999999999986 79999998755443 233221 00 0111111 11 12222111
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCC
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSV 208 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~ 208 (298)
..-|++|..||..... .++ -.+.++.|. .+.+.+.+.+.+.. .+.|+++|..
T Consensus 67 --~~aDivVitag~~~~~---g~s---R~~ll~~N~----~i~~~i~~~i~~~~p~~iiivvtNP 119 (144)
T d1mlda1 67 --KGCDVVVIPAGVPRKP---GMT---RDDLFNTNA----TIVATLTAACAQHCPDAMICIISNP 119 (144)
T ss_dssp --TTCSEEEECCSCCCCT---TCC---GGGGHHHHH----HHHHHHHHHHHHHCTTSEEEECSSC
T ss_pred --CCCCEEEECCCcCCCC---CCC---cchHHHHHH----HHHHHHHHHHHhcCCCeEEEEecCc
Confidence 3689999999974321 122 223445554 44566666666644 5667766664
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.96 E-value=0.0015 Score=50.08 Aligned_cols=74 Identities=18% Similarity=0.232 Sum_probs=52.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|.+|+|.|+ +|+|...++.+-..|+++++++++.++.+.. +++.. . .+ +|..+.+...
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a-~~lGa---------d-~~--i~~~~~~~~~------- 88 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAA-KALGA---------D-EV--VNSRNADEMA------- 88 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHH-HHHTC---------S-EE--EETTCHHHHH-------
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHHH-hccCC---------c-EE--EECchhhHHH-------
Confidence 3789999986 8999998888888899999999998887543 33311 1 12 3555554322
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
.....+|++|.++|.
T Consensus 89 ~~~~~~D~vid~~g~ 103 (168)
T d1uufa2 89 AHLKSFDFILNTVAA 103 (168)
T ss_dssp TTTTCEEEEEECCSS
T ss_pred HhcCCCceeeeeeec
Confidence 222479999999985
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.95 E-value=0.0065 Score=45.77 Aligned_cols=121 Identities=15% Similarity=0.073 Sum_probs=71.8
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+.+.|.|+ |.+|..+|..++..+. +++++|.+++.++....++.......+. ...... -++.+ +. +
T Consensus 7 ~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~--~~~~~~--~~~~~---~~---~- 74 (154)
T d1pzga1 7 RKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDT--NVSVRA--EYSYE---AA---L- 74 (154)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTC--CCCEEE--ECSHH---HH---H-
T ss_pred CCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCC--eeEEec--cCchh---hh---h-
Confidence 356777897 8999999999998885 9999999999888877777653322111 111111 11121 11 1
Q ss_pred cccCCccEEEEccCCCCCCC--CCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcC
Q 022369 144 GRLGPLHVLINNAGIFSIGE--PQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNS 207 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~--~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS 207 (298)
..-|++|..+|...... -.+.+. .+.+..| ..+.+.+.+.+.+.. .+.++++|.
T Consensus 75 ---~~adiVvitag~~~~~g~~~~~~tR---~~l~~~n----~~iv~~i~~~i~~~~p~aiviivsN 131 (154)
T d1pzga1 75 ---TGADCVIVTAGLTKVPGKPDSEWSR---NDLLPFN----SKIIREIGQNIKKYCPKTFIIVVTN 131 (154)
T ss_dssp ---TTCSEEEECCSCSSCTTCCGGGCCG---GGGHHHH----HHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred ---cCCCeEEEecccccCCCCCCcccch---hhhhhhh----HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 26899999999864211 111121 2223333 445666666666544 456666665
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.95 E-value=0.0022 Score=48.83 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=35.1
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
|.+++|.|+ +++|...+..+...|++|+.+++++++++..
T Consensus 28 g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a 67 (166)
T d1llua2 28 GQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELA 67 (166)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhh
Confidence 688999886 9999998888888899999999998887654
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=96.92 E-value=0.009 Score=44.30 Aligned_cols=114 Identities=13% Similarity=0.017 Sum_probs=71.9
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcC--chHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA--HVVMAVRN--LKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.+.|.||+|.+|.++|..++.+|. ++++.|.+ ++.++....++.....-. ........|. ++
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~---~~~~i~~~~~---~~-------- 67 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYD---SNTRVRQGGY---ED-------- 67 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTT---CCCEEEECCG---GG--------
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhccccc---CCceEeeCCH---HH--------
Confidence 478999999999999999999986 79999954 445555555555432211 2334444443 21
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcC
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNS 207 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS 207 (298)
..+-|++|..||.... + .++ -.+.++.| ..+.+.+.+.+.+.. ++.++.+|.
T Consensus 68 ---~~~aDiVvitaG~~~~-~--g~~---R~dl~~~N----~~I~~~i~~~i~~~~p~~i~ivvtN 120 (142)
T d1o6za1 68 ---TAGSDVVVITAGIPRQ-P--GQT---RIDLAGDN----APIMEDIQSSLDEHNDDYISLTTSN 120 (142)
T ss_dssp ---GTTCSEEEECCCCCCC-T--TCC---HHHHHHHH----HHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred ---hhhcCEEEEecccccc-c--CCc---hhhHHHHH----HHHHHHHHHHHHhcCCCceEEEecC
Confidence 2368999999997532 1 122 33445544 456677777777754 455555655
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.89 E-value=0.0022 Score=48.26 Aligned_cols=76 Identities=13% Similarity=0.082 Sum_probs=58.3
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhccc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRL 146 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~ 146 (298)
+++|.|. +-+|..+++.|.++|.+|++++.++++.....++... ..+.++..|.++++..+++--
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~--------~~~~vi~Gd~~d~~~L~~a~i------ 69 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG--------DNADVIPGDSNDSSVLKKAGI------ 69 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC--------TTCEEEESCTTSHHHHHHHTT------
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc--------CCcEEEEccCcchHHHHHhcc------
Confidence 5788887 6899999999999999999999998877766666543 257889999999986544411
Q ss_pred CCccEEEEccC
Q 022369 147 GPLHVLINNAG 157 (298)
Q Consensus 147 g~idilVnnag 157 (298)
.+.|.+|...+
T Consensus 70 ~~a~~vi~~~~ 80 (153)
T d1id1a_ 70 DRCRAILALSD 80 (153)
T ss_dssp TTCSEEEECSS
T ss_pred ccCCEEEEccc
Confidence 25677776543
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.80 E-value=0.0073 Score=44.82 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=68.3
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+.+.|.|+ |.+|.++|..|+.++. +++++|.+++..+....++.....-.....++.. .-|..+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~-~~d~~~------------- 66 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTG-TNNYAD------------- 66 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEE-ESCGGG-------------
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEe-cCcHHH-------------
Confidence 35666686 9999999999999886 9999999998877766666432111010011221 122221
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcC
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNS 207 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS 207 (298)
..+-|++|.+||..... .. .-.+.+..| ..+.+...+.+.+.. .+.++++|.
T Consensus 67 -~~~advvvitag~~~~~---~~---~r~dl~~~N----~~i~~~i~~~i~k~~p~aivivvtN 119 (142)
T d1uxja1 67 -TANSDVIVVTSGAPRKP---GM---SREDLIKVN----ADITRACISQAAPLSPNAVIIMVNN 119 (142)
T ss_dssp -GTTCSEEEECCSCC---------------CHHHH----HHHHHHHHHHHGGGCTTCEEEECSS
T ss_pred -hcCCCEEEEeeeccCCc---Cc---chhHHHhHH----HHHHHHHHHHHhccCCCceEEEeCC
Confidence 13679999999975421 11 122334444 357778888887755 455555554
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.77 E-value=0.0034 Score=49.31 Aligned_cols=80 Identities=18% Similarity=0.111 Sum_probs=52.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|.+|+|.|+ +++|...+..+...|+ +|+++++++++++...+. |... ..|-.+.+ +.+.+.++
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----------Ga~~---~~~~~~~~-~~~~i~~~ 89 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----------GFEI---ADLSLDTP-LHEQIAAL 89 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCEE---EETTSSSC-HHHHHHHH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----------cccE---EEeCCCcC-HHHHHHHH
Confidence 3789999986 7999888888777787 899999998887655322 1122 22333433 33333333
Q ss_pred hcccCCccEEEEccCCC
Q 022369 143 NGRLGPLHVLINNAGIF 159 (298)
Q Consensus 143 ~~~~g~idilVnnag~~ 159 (298)
... ...|++|.+.|.-
T Consensus 90 t~g-~g~D~vid~vG~~ 105 (195)
T d1kola2 90 LGE-PEVDCAVDAVGFE 105 (195)
T ss_dssp HSS-SCEEEEEECCCTT
T ss_pred hCC-CCcEEEEECcccc
Confidence 322 3699999999853
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.73 E-value=0.015 Score=43.17 Aligned_cols=113 Identities=14% Similarity=0.066 Sum_probs=70.4
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 68 CIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
+.|.|+ |.+|.++|..++.+|. +++++|+++++++....+++....-.+ ........|..+.
T Consensus 4 i~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~--~~~i~~~~~~~~~------------- 67 (143)
T d1llda1 4 LAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYP--TVSIDGSDDPEIC------------- 67 (143)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGST--TCEEEEESCGGGG-------------
T ss_pred EEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCC--CceeecCCCHHHh-------------
Confidence 556686 9999999999999986 899999999888877667765322211 1111122222211
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcC
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNS 207 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS 207 (298)
..-|++|..||.... ...+. .+.+..|. .+.+.+.+.+.+.. .+.++++|.
T Consensus 68 -~daDvVVitaG~~~~---~g~~R---~dl~~~N~----~i~~~i~~~i~~~~p~ai~ivvtN 119 (143)
T d1llda1 68 -RDADMVVITAGPRQK---PGQSR---LELVGATV----NILKAIMPNLVKVAPNAIYMLITN 119 (143)
T ss_dssp -TTCSEEEECCCCCCC---TTCCH---HHHHHHHH----HHHHHHHHHHHHHCTTSEEEECCS
T ss_pred -hCCcEEEEecccccC---CCCch---hhhhhhhH----HHHHHHHHHHHhhCCCeEEEEeCC
Confidence 257999999997532 12232 23455554 55666666666654 355566655
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=96.71 E-value=0.0025 Score=45.38 Aligned_cols=38 Identities=24% Similarity=0.479 Sum_probs=34.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~ 100 (298)
+++||.+||.||+. +|..-|+.|++.|++|++++....
T Consensus 9 ~l~~k~vlVvG~G~-va~~ka~~ll~~ga~v~v~~~~~~ 46 (113)
T d1pjqa1 9 QLRDRDCLIVGGGD-VAERKARLLLEAGARLTVNALTFI 46 (113)
T ss_dssp CCBTCEEEEECCSH-HHHHHHHHHHHTTBEEEEEESSCC
T ss_pred EeCCCEEEEECCCH-HHHHHHHHHHHCCCeEEEEeccCC
Confidence 78899999999876 999999999999999999987654
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.70 E-value=0.014 Score=43.71 Aligned_cols=121 Identities=15% Similarity=0.081 Sum_probs=71.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
..+.|.|+ |.+|.++|..++.++. +++++|++++.++....++.....-.+ ........| +. +
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~--~~~~v~~~~--~~-----------~ 67 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAY--SNCKVSGSN--TY-----------D 67 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHT--CCCCEEEEC--CG-----------G
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccC--CCcEEEecc--cc-----------c
Confidence 34677785 8999999998888885 899999999888877777654321111 122232222 11 1
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcC
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNS 207 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS 207 (298)
...+-|++|.++|........+. ..+-...+..| ..+.+.+.+.+.+.. .+.++++|.
T Consensus 68 ~~~~advvvitag~~~~~g~~~~-~~~R~~l~~~N----~~iv~~i~~~i~~~~p~aivivvtN 126 (150)
T d1t2da1 68 DLAGADVVIVTAGFTKAPGKSDK-EWNRDDLLPLN----NKIMIEIGGHIKKNCPNAFIIVVTN 126 (150)
T ss_dssp GGTTCSEEEECCSCSSCTTCCST-TCCGGGGHHHH----HHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred ccCCCcEEEEecccccCCCCCcc-ccchhHHHHHH----HHHHHHHHHHHHhcCCCeEEEEecC
Confidence 12468999999997542111110 01122334444 356666667676644 455666665
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.00085 Score=46.22 Aligned_cols=38 Identities=8% Similarity=0.071 Sum_probs=33.7
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~ 100 (298)
+++||+++|.|. +.-|+++|+.|+++|++|++.|.+.+
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 578999999998 56799999999999999999998654
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.62 E-value=0.0094 Score=44.12 Aligned_cols=114 Identities=16% Similarity=0.106 Sum_probs=67.9
Q ss_pred EEEeCCCCchHHHHHHHHHHcC--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 68 CIVTGSTSGIGREIARQLAESG--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
+.|+|+ |.+|..+|..++..| .+++++|+++++++....++........ ....+... .+.++
T Consensus 3 I~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~--~~~~i~~~--~~~~~----------- 66 (142)
T d1guza1 3 ITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGL--FDTKVTGS--NDYAD----------- 66 (142)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHT--CCCEEEEE--SCGGG-----------
T ss_pred EEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhc--ccceEEec--CCHHH-----------
Confidence 567786 899999999999998 4999999999888766656544321111 12223222 22221
Q ss_pred cCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcC
Q 022369 146 LGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNS 207 (298)
Q Consensus 146 ~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS 207 (298)
+.+-|++|.+||...... .+. .+.++.|. .+.+.+.+.+.+.. .+.++++|.
T Consensus 67 ~~dadvvvitag~~~~~g---~~r---~~l~~~N~----~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1guza1 67 TANSDIVIITAGLPRKPG---MTR---EDLLMKNA----GIVKEVTDNIMKHSKNPIIIVVSN 119 (142)
T ss_dssp GTTCSEEEECCSCCCCTT---CCH---HHHHHHHH----HHHHHHHHHHHHHCSSCEEEECCS
T ss_pred hcCCeEEEEEEecCCCCC---Cch---HHHHHHHH----HHHHHHHHHhhccCCCeEEEEecC
Confidence 236899999999854211 121 23334343 34555555555533 456666655
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.60 E-value=0.022 Score=42.11 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=70.3
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEE-cCCCCHHHHHHHHHHHhc
Q 022369 68 CIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAME-LDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~D~s~~~~v~~~~~~~~~ 144 (298)
+.|.|+ |.+|.++|..++.+|. +++++|++++.++....+++....... ....... -|..+
T Consensus 3 I~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~--~~~~i~~~~d~~~------------- 66 (142)
T d1ojua1 3 LGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGID--KYPKIVGGADYSL------------- 66 (142)
T ss_dssp EEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTT--CCCEEEEESCGGG-------------
T ss_pred EEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccC--CCCccccCCCHHH-------------
Confidence 566686 9999999999998885 799999999988877777765432211 1222222 23221
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcC
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNS 207 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS 207 (298)
...-|++|..||..... ..+ -.+.+..| ..+.+...+.+.+.. .+.++++|.
T Consensus 67 -~~~adiVvitag~~~~~---g~~---r~~l~~~n----~~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1ojua1 67 -LKGSEIIVVTAGLARKP---GMT---RLDLAHKN----AGIIKDIAKKIVENAPESKILVVTN 119 (142)
T ss_dssp -GTTCSEEEECCCCCCCS---SCC---HHHHHHHH----HHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred -hccccEEEEeccccCCC---CCc---hHHHHHHh----hHHHHHHHHHHHhhCCCcEEEEecC
Confidence 23679999999975321 122 22333333 456666677776654 455555555
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.58 E-value=0.0072 Score=45.73 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=55.0
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHH-HhhcC---CCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQ-EEWSG---KGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+.|.| .|-+|.++|+.|.+.|++|+.++|+++.++...+.-. ..... .-...++.++.+ ..+.++++++++.
T Consensus 3 I~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilav---p~~~~~~vl~~l~ 78 (165)
T d2f1ka2 3 IGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCT---PIQLILPTLEKLI 78 (165)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECS---CHHHHHHHHHHHG
T ss_pred EEEEe-ecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccC---cHhhhhhhhhhhh
Confidence 44554 4899999999999999999999999887776544210 00000 000123333322 3667888888887
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
....+=.++++.++.
T Consensus 79 ~~l~~~~iv~~~~s~ 93 (165)
T d2f1ka2 79 PHLSPTAIVTDVASV 93 (165)
T ss_dssp GGSCTTCEEEECCSC
T ss_pred hhcccccceeecccc
Confidence 766555566665443
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.56 E-value=0.0023 Score=50.24 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=39.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEE 112 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~ 112 (298)
|.+.|.|| |-+|..+|..++..|++|+++|++++.++...+.+++.
T Consensus 5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~ 50 (192)
T d1f0ya2 5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEES 50 (192)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHH
Confidence 57888888 66999999999999999999999999888877776553
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.44 E-value=0.0071 Score=46.43 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=59.7
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHH---------------HHhhcCCCCCccEEEEEcCCC
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKW---------------QEEWSGKGLPLNIEAMELDLL 130 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~D~s 130 (298)
+.+-|.|- +-+|..+|+.|++.|++|++++|++++.+++.++- .+.. .....+...+.
T Consensus 3 ~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~ii~~~~ 75 (176)
T d2pgda2 3 ADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKL------KKPRRIILLVK 75 (176)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHB------CSSCEEEECSC
T ss_pred CcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhh------cccceEEEecC
Confidence 34556665 78999999999999999999999999998875531 1111 12234445566
Q ss_pred CHHHHHHHHHHHhcccCCccEEEEccCC
Q 022369 131 SLDSVVRFSEAWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 131 ~~~~v~~~~~~~~~~~g~idilVnnag~ 158 (298)
+.+.+.+..+.+......=+++|++.-.
T Consensus 76 ~~~~v~~v~~~l~~~~~~g~iiid~sT~ 103 (176)
T d2pgda2 76 AGQAVDNFIEKLVPLLDIGDIIIDGGNS 103 (176)
T ss_dssp TTHHHHHHHHHHHHHCCTTCEEEECSCC
T ss_pred chHHHHHHHHHHHhccccCcEEEecCcc
Confidence 6777888888777665445677776544
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=96.44 E-value=0.0073 Score=46.93 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=38.8
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHh
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEE 112 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~ 112 (298)
|.+.|.|| |-+|..+|..|+..|++|++.|++++.+++..+.+...
T Consensus 5 ~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~ 50 (186)
T d1wdka3 5 KQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKL 50 (186)
T ss_dssp SSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhh
Confidence 45777887 66999999999999999999999999888777766543
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=96.39 E-value=0.015 Score=43.57 Aligned_cols=115 Identities=12% Similarity=0.078 Sum_probs=69.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC---------EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA---------HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~---------~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
.|.|+||+|.+|..+|..|+..+. +++..+++.++++....++..... .....+...-.+.+.
T Consensus 6 KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--- 77 (154)
T d1y7ta1 6 RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAF-----PLLAGLEATDDPKVA--- 77 (154)
T ss_dssp EEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-----TTEEEEEEESCHHHH---
T ss_pred EEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccc-----ccccccccCCchhhh---
Confidence 699999999999999999997653 333445666777766666554221 123333333222221
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-C-CCeEEEEcC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-S-PSRIINVNS 207 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~-~g~Iv~isS 207 (298)
+.+-|++|..||.... ..++.++ .++.| ..+.+.+.+.+.+. . .+.|+.+|.
T Consensus 78 --------~~~advViitaG~~~~---pg~~r~d---l~~~N----~~i~~~~~~~i~k~a~~~~~vivvsN 131 (154)
T d1y7ta1 78 --------FKDADYALLVGAAPRK---AGMERRD---LLQVN----GKIFTEQGRALAEVAKKDVKVLVVGN 131 (154)
T ss_dssp --------TTTCSEEEECCCCCCC---TTCCHHH---HHHHH----HHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred --------cccccEEEeecCcCCC---CCCcHHH---HHHHH----HHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 2478999999998532 2233333 34434 45666666667663 3 355666665
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=96.35 E-value=0.0058 Score=45.65 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=54.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.-|.+.|.||.|-+|..+|+.|.+.|++|.+.+|+.+...+...+ ...+.....+ ...+...+.++.
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~~~----------~~~~v~~~~~---~~~~~~v~~~~~ 74 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILA----------NADVVIVSVP---INLTLETIERLK 74 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHHHT----------TCSEEEECSC---GGGHHHHHHHHG
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchhhh----------hccccccccc---hhhheeeeeccc
Confidence 346899999999999999999999999999999987665443211 1234444333 445666667766
Q ss_pred cccCCccEEEEccC
Q 022369 144 GRLGPLHVLINNAG 157 (298)
Q Consensus 144 ~~~g~idilVnnag 157 (298)
.....=.+++..+.
T Consensus 75 ~~~~~~~iiiD~~S 88 (152)
T d2pv7a2 75 PYLTENMLLADLTS 88 (152)
T ss_dssp GGCCTTSEEEECCS
T ss_pred ccccCCceEEEecc
Confidence 55433235555544
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.26 E-value=0.011 Score=44.52 Aligned_cols=41 Identities=15% Similarity=0.081 Sum_probs=35.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.|.+++|.|+ |++|...+..+...|++|+++++++++++..
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~ 67 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELA 67 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhhh
Confidence 3688999875 8999999888888999999999998887654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.14 Score=37.62 Aligned_cols=115 Identities=14% Similarity=0.103 Sum_probs=68.5
Q ss_pred EEEEeCCCCchHHHHHHHHHHc-C--CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 67 TCIVTGSTSGIGREIARQLAES-G--AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~-G--~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+.|+|++|.+|.++|..|+.+ + .++++.|.++ ..+....++..... ...... ..+-.+.+++
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~----~~~~~~-~~~~~~~~~~-------- 67 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPT----AVKIKG-FSGEDATPAL-------- 67 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCS----SCEEEE-ECSSCCHHHH--------
T ss_pred EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCcc----ccCCcE-EEcCCCcccc--------
Confidence 4789999999999999998743 4 5899999864 45544445544211 112222 2333344322
Q ss_pred cccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCC-CCeEEEEcCC
Q 022369 144 GRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGS-PSRIINVNSV 208 (298)
Q Consensus 144 ~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~-~g~Iv~isS~ 208 (298)
-+-|++|..||..... ..+ -.+.++.| ..+.+.+.+.+.+.. ++.++++|..
T Consensus 68 ---~~aDvvvitaG~~~k~---g~~---R~dl~~~N----~~i~~~v~~~i~~~~p~aivivvtNP 120 (145)
T d2cmda1 68 ---EGADVVLISAGVRRKP---GMD---RSDLFNVN----AGIVKNLVQQVAKTCPKACIGIITNP 120 (145)
T ss_dssp ---TTCSEEEECCSCCCCT---TCC---GGGGHHHH----HHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred ---CCCCEEEECCCccCCC---Ccc---hhhHHHHH----HHHHHHHHHHHHhhCCCcEEEEccCC
Confidence 1569999999985321 122 23345555 345566666666543 4566767664
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=96.13 E-value=0.088 Score=40.10 Aligned_cols=116 Identities=9% Similarity=0.019 Sum_probs=66.6
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC-------EEEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA-------HVVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVV 136 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~-------~Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~ 136 (298)
-.|.||||+|.||..++..|+..+. .+.+.+... +.++...-+++.... .....+..- ++..
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~-----~~~~~~~~~-~~~~--- 95 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY-----PLLREVSIG-IDPY--- 95 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC-----TTEEEEEEE-SCHH---
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccc-----ccccCcccc-ccch---
Confidence 3699999999999999999997531 455555543 445555555544211 111111111 1221
Q ss_pred HHHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-C-CCeEEEEcC
Q 022369 137 RFSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-S-PSRIINVNS 207 (298)
Q Consensus 137 ~~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~-~g~Iv~isS 207 (298)
+.+.+.|++|..+|.... .. +.-++.++.| ..+.+...+.+.+. . ...|+.++.
T Consensus 96 -------~~~~~aDvVvi~ag~~rk---pg---~tR~Dll~~N----~~I~k~~~~~i~~~a~~~~~vlvv~N 151 (175)
T d7mdha1 96 -------EVFEDVDWALLIGAKPRG---PG---MERAALLDIN----GQIFADQGKALNAVASKNVKVLVVGN 151 (175)
T ss_dssp -------HHTTTCSEEEECCCCCCC---TT---CCHHHHHHHH----HHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred -------hhccCCceEEEeeccCCC---CC---CcHHHHHHHH----HHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 113478999999998532 12 2334455555 45566667777663 3 345555554
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.10 E-value=0.0086 Score=44.67 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=32.6
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN 98 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~ 98 (298)
.++||.+||.||+ .+|..-|+.|++.|++|++++..
T Consensus 10 ~l~gkrvLViGgG-~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 10 QLKDKRILLIGGG-EVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp CCTTCEEEEEEES-HHHHHHHHHHGGGTCEEEEEEEE
T ss_pred eeCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEeCC
Confidence 5889999999995 59999999999999999999754
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=96.03 E-value=0.0067 Score=47.81 Aligned_cols=45 Identities=27% Similarity=0.440 Sum_probs=39.3
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
..+++||+++|-| .|.+|..+|+.|.+.|++|++++.+.+.+...
T Consensus 22 ~~~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~ 66 (201)
T d1c1da1 22 LGSLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVAHA 66 (201)
T ss_dssp CCCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHHHHHH
Confidence 3479999999997 66799999999999999999999998776654
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.93 E-value=0.082 Score=39.29 Aligned_cols=115 Identities=11% Similarity=0.060 Sum_probs=62.9
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCC-------EEEEEEcCc--hHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGA-------HVVMAVRNL--KAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~-------~Vil~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
.|.|+||+|.+|.++|..|+..+. .+++.+.+. ++++.+..++..... .....+..--.+++
T Consensus 5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~---- 75 (154)
T d5mdha1 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCAL-----PLLKDVIATDKEEI---- 75 (154)
T ss_dssp EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCC-----TTEEEEEEESCHHH----
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccc-----ccccccccCccccc----
Confidence 689999999999999999986542 466666543 344444444333211 11222221111111
Q ss_pred HHHHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcC-C-CCeEEEEcC
Q 022369 138 FSEAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRG-S-PSRIINVNS 207 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~-~-~g~Iv~isS 207 (298)
.+.+.|++|..+|..... .++.+ +.++.| ..+.+...+.+.+. . .+.++.+|.
T Consensus 76 -------~~~~~dvVVitag~~~~~---g~sr~---dll~~N----~~i~k~~~~~i~k~a~~~~~iivvsN 130 (154)
T d5mdha1 76 -------AFKDLDVAILVGSMPRRD---GMERK---DLLKAN----VKIFKCQGAALDKYAKKSVKVIVVGN 130 (154)
T ss_dssp -------HTTTCSEEEECCSCCCCT---TCCTT---TTHHHH----HHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred -------ccCCceEEEEecccCCCC---CCchh---HHHHHh----HHHHHHHHHHHHhhCCCceEEEEecC
Confidence 124789999999985422 12222 233434 35666666666553 3 344555554
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.92 E-value=0.0067 Score=46.48 Aligned_cols=41 Identities=24% Similarity=0.190 Sum_probs=35.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQ 107 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~ 107 (298)
|++-|.|| |.+|.++|..|+++|+.|.+++|++++.+...+
T Consensus 2 k~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (184)
T d1bg6a2 2 KTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQD 42 (184)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 67888888 789999999999999999999999888776543
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=95.87 E-value=0.017 Score=43.52 Aligned_cols=79 Identities=18% Similarity=0.176 Sum_probs=50.5
Q ss_pred CCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHH-------HHhhcCCCCCccEEEEEcCCCCHHHHHHHHH---HH
Q 022369 73 STSGIGREIARQLAESGAHVVMAVRNLKAANELIQKW-------QEEWSGKGLPLNIEAMELDLLSLDSVVRFSE---AW 142 (298)
Q Consensus 73 as~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~---~~ 142 (298)
|.+-+|..+|+.|++.|++|++.+|++++.+++.+.- .+... ...++..=+.+.+.+++++. .+
T Consensus 7 GlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~------~~d~ii~~v~~~~~v~~v~~~~~~~ 80 (161)
T d1vpda2 7 GLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAE------QCDVIITMLPNSPHVKEVALGENGI 80 (161)
T ss_dssp CCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHH------HCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred ehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHh------CCCeEEEEcCCHHHHHHHHhCCcch
Confidence 4578999999999999999999999999888775421 11111 22334445667777777652 23
Q ss_pred hcccCCccEEEEccC
Q 022369 143 NGRLGPLHVLINNAG 157 (298)
Q Consensus 143 ~~~~g~idilVnnag 157 (298)
.....+=+++|.+.-
T Consensus 81 ~~~~~~g~iiid~sT 95 (161)
T d1vpda2 81 IEGAKPGTVLIDMSS 95 (161)
T ss_dssp HHHCCTTCEEEECSC
T ss_pred hhccCCCCEEEECCC
Confidence 333223345555544
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=95.85 E-value=0.005 Score=44.74 Aligned_cols=70 Identities=14% Similarity=0.189 Sum_probs=49.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
|+++|.|. +.+|.++++.|. |.+|++++.+++..+...+. .+.++..|.++++..+++ .
T Consensus 1 kHivI~G~-g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~~------------~~~~i~Gd~~~~~~L~~a------~ 59 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLRELR--GSEVFVLAEDENVRKKVLRS------------GANFVHGDPTRVSDLEKA------N 59 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTSC--GGGEEEEESCTTHHHHHHHT------------TCEEEESCTTSHHHHHHT------T
T ss_pred CEEEEECC-CHHHHHHHHHHc--CCCCEEEEcchHHHHHHHhc------------CccccccccCCHHHHHHh------h
Confidence 56888875 679999999994 56788889998877655221 467888999999866543 1
Q ss_pred cCCccEEEEcc
Q 022369 146 LGPLHVLINNA 156 (298)
Q Consensus 146 ~g~idilVnna 156 (298)
..+-+.+|...
T Consensus 60 i~~A~~vi~~~ 70 (129)
T d2fy8a1 60 VRGARAVIVNL 70 (129)
T ss_dssp CTTCSEEEECC
T ss_pred hhcCcEEEEec
Confidence 23566666543
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=95.76 E-value=0.43 Score=39.68 Aligned_cols=84 Identities=11% Similarity=0.060 Sum_probs=56.1
Q ss_pred CCCEEEEeCCC-CchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 64 NDLTCIVTGST-SGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas-~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+|+.||=..+. ||++.+ ++..|+ .|+.++.++..++...+.++...-. ..++.++..|+- ..++.
T Consensus 144 ~g~~VLdlf~~~G~~sl~----aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~---~~~~~~i~~d~~------~~l~~ 210 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVA----AAMGGAMATTSVDLAKRSRALSLAHFEANHLD---MANHQLVVMDVF------DYFKY 210 (317)
T ss_dssp BTCEEEEETCTTTHHHHH----HHHTTBSEEEEEESCTTHHHHHHHHHHHTTCC---CTTEEEEESCHH------HHHHH
T ss_pred CCCceeecCCCCcHHHHH----HHhCCCceEEEecCCHHHHHHHHHHHHHhccc---CcceEEEEccHH------HHHHH
Confidence 36788866555 555543 445777 7999999999998888777653211 136888988874 23344
Q ss_pred HhcccCCccEEEEccCCCC
Q 022369 142 WNGRLGPLHVLINNAGIFS 160 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~ 160 (298)
..++..+.|++|.++....
T Consensus 211 ~~~~~~~fD~Ii~DPP~f~ 229 (317)
T d2b78a2 211 ARRHHLTYDIIIIDPPSFA 229 (317)
T ss_dssp HHHTTCCEEEEEECCCCC-
T ss_pred HHhhcCCCCEEEEcChhhc
Confidence 4444457999999977543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.74 E-value=0.011 Score=46.42 Aligned_cols=73 Identities=19% Similarity=0.130 Sum_probs=53.8
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++.||+||=-|+++|+ ++..++..|+ +|+.++.+++.++...+.+ .++.++.+|+.+.
T Consensus 45 ~dl~Gk~VLDlGcGtG~---l~i~a~~~ga~~V~~vDid~~a~~~ar~N~----------~~~~~~~~D~~~l------- 104 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGI---LACGSYLLGAESVTAFDIDPDAIETAKRNC----------GGVNFMVADVSEI------- 104 (197)
T ss_dssp TSSBTSEEEEETCTTCH---HHHHHHHTTBSEEEEEESCHHHHHHHHHHC----------TTSEEEECCGGGC-------
T ss_pred CCCCCCEEEEeCCCCcH---HHHHHHHcCCCcccccccCHHHHHHHHHcc----------ccccEEEEehhhc-------
Confidence 46789999999999883 4455777886 7999999987766553322 2577888998542
Q ss_pred HHHhcccCCccEEEEccCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIF 159 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~ 159 (298)
-+++|++|.|..+.
T Consensus 105 ------~~~fD~Vi~NPPfg 118 (197)
T d1ne2a_ 105 ------SGKYDTWIMNPPFG 118 (197)
T ss_dssp ------CCCEEEEEECCCC-
T ss_pred ------CCcceEEEeCcccc
Confidence 25899999998764
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=95.53 E-value=0.22 Score=41.61 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=56.6
Q ss_pred CCCCEEEEeCCCC-chHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTS-GIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 63 ~~~k~vlITGas~-GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.+|+.||=.++.. |++.+ +++.|.+|+.++.+++.++.+.+.+.... . .++.++..|..+.. +.
T Consensus 144 ~~g~rVLDl~~gtG~~s~~----~a~g~~~V~~vD~s~~al~~a~~n~~~ng----l-~~~~~i~~d~~~~~------~~ 208 (318)
T d1wxxa2 144 FRGERALDVFSYAGGFALH----LALGFREVVAVDSSAEALRRAEENARLNG----L-GNVRVLEANAFDLL------RR 208 (318)
T ss_dssp CCEEEEEEETCTTTHHHHH----HHHHEEEEEEEESCHHHHHHHHHHHHHTT----C-TTEEEEESCHHHHH------HH
T ss_pred hCCCeeeccCCCCcHHHHH----HHhcCCcEEeecchHHHHHHHHHHHHHcC----C-CCcceeeccHHHHh------hh
Confidence 3578888777664 44433 44556799999999999888877776532 2 36888888875433 33
Q ss_pred HhcccCCccEEEEccCCCC
Q 022369 142 WNGRLGPLHVLINNAGIFS 160 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~ 160 (298)
.....++.|++|.++....
T Consensus 209 ~~~~~~~fD~Vi~DpP~~~ 227 (318)
T d1wxxa2 209 LEKEGERFDLVVLDPPAFA 227 (318)
T ss_dssp HHHTTCCEEEEEECCCCSC
T ss_pred hHhhhcCCCEEEEcCCccc
Confidence 3333457999999987543
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=95.50 E-value=0.1 Score=36.55 Aligned_cols=83 Identities=18% Similarity=0.243 Sum_probs=61.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+.++.|.| +|-+|+-+|.+..+.|+++++.|.+++.-... ..-.++..|..|.+.+.+++...
T Consensus 11 ~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~--------------va~~~i~~~~~d~~~l~~~~~~~-- 73 (111)
T d1kjqa2 11 ATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYADAPAMH--------------VAHRSHVINMLDGDALRRVVELE-- 73 (111)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTTCGGGG--------------GSSEEEECCTTCHHHHHHHHHHH--
T ss_pred CCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCCCchhh--------------cCCeEEECCCCCHHHHHHHHHhh--
Confidence 45688998 56899999999999999999999885532111 12357789999999999988764
Q ss_pred ccCCccEEEEccCCCCCCCCCccChhhHHHH
Q 022369 145 RLGPLHVLINNAGIFSIGEPQKFSKDGYEEH 175 (298)
Q Consensus 145 ~~g~idilVnnag~~~~~~~~~~~~~~~~~~ 175 (298)
++|++.. .++.++.+.+++.
T Consensus 74 ---~~DviT~--------E~EnI~~~~L~~l 93 (111)
T d1kjqa2 74 ---KPHYIVP--------EIEAIATDMLIQL 93 (111)
T ss_dssp ---CCSEEEE--------CSSCSCHHHHHHH
T ss_pred ---CCceEEE--------EecCcCHHHHHHH
Confidence 6787743 4566666555544
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.32 E-value=0.054 Score=42.30 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=56.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.+++|++||=-|+++|. ++..++.+|+ +|+.++.+++.++.+.+.++.. +.+..++..|+.+.
T Consensus 43 ~dl~g~~vLDlg~GtG~---l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~------~~~~~~~~~d~~~~------- 106 (201)
T d1wy7a1 43 GDIEGKVVADLGAGTGV---LSYGALLLGAKEVICVEVDKEAVDVLIENLGEF------KGKFKVFIGDVSEF------- 106 (201)
T ss_dssp TSSTTCEEEEETCTTCH---HHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG------TTSEEEEESCGGGC-------
T ss_pred CCCCCCEEEECcCcchH---HHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHc------CCCceEEECchhhh-------
Confidence 46789999988888772 3334556786 8999999988888776665432 24678888887432
Q ss_pred HHHhcccCCccEEEEccCCCC
Q 022369 140 EAWNGRLGPLHVLINNAGIFS 160 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~ 160 (298)
.+++|++|.|+.+..
T Consensus 107 ------~~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 107 ------NSRVDIVIMNPPFGS 121 (201)
T ss_dssp ------CCCCSEEEECCCCSS
T ss_pred ------CCcCcEEEEcCcccc
Confidence 357999999998643
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.26 E-value=0.11 Score=39.23 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=59.5
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.+.-.|+|.|++ --|++-++...+.|++|.+.|.+.++++++...... .+.. -.++.+.+.+.++
T Consensus 30 v~pa~V~ViGaG-vaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~---------~~~~---~~~~~~~l~~~~~-- 94 (168)
T d1pjca1 30 VKPGKVVILGGG-VVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS---------RVEL---LYSNSAEIETAVA-- 94 (168)
T ss_dssp BCCCEEEEECCS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG---------GSEE---EECCHHHHHHHHH--
T ss_pred CCCcEEEEECCC-hHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc---------ccee---ehhhhhhHHHhhc--
Confidence 445678888875 578889999999999999999999998877655432 2333 2345665555444
Q ss_pred hcccCCccEEEEccCCCCCCCCCccC
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFS 168 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~ 168 (298)
+-|++|.++=+.......-++
T Consensus 95 -----~aDivI~aalipG~~aP~lIt 115 (168)
T d1pjca1 95 -----EADLLIGAVLVPGRRAPILVP 115 (168)
T ss_dssp -----TCSEEEECCCCTTSSCCCCBC
T ss_pred -----cCcEEEEeeecCCcccCeeec
Confidence 579999999876544333333
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.017 Score=43.72 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=38.9
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
.++.||.++|.|-|.-.|+-++..|.++|++|.++......+.+.
T Consensus 33 i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~~ 77 (166)
T d1b0aa1 33 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHH 77 (166)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHHH
T ss_pred cccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHHH
Confidence 368899999999999999999999999999999987765555443
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.10 E-value=0.12 Score=38.17 Aligned_cols=80 Identities=11% Similarity=0.078 Sum_probs=56.0
Q ss_pred CCCCCEEEEeCCCCc-hHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSG-IGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas~G-IG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
.++|+.+|=.|+++| +|. +++.+|+ +|+.++.+++..+.+.+.++.. +...++.+++.|..+ .+
T Consensus 12 ~~~g~~vlDl~~GtG~~~i----ea~~rga~~v~~ve~~~~a~~~~~~n~~~~----~~~~~~~ii~~D~~~------~l 77 (152)
T d2esra1 12 YFNGGRVLDLFAGSGGLAI----EAVSRGMSAAVLVEKNRKAQAIIQDNIIMT----KAENRFTLLKMEAER------AI 77 (152)
T ss_dssp CCCSCEEEEETCTTCHHHH----HHHHTTCCEEEEECCCHHHHHHHHHHHHTT----TCGGGEEEECSCHHH------HH
T ss_pred hCCCCeEEEcCCccCHHHH----HHHHhCcceeeeehhchhhhhhhhhhhhhc----ccccchhhhcccccc------cc
Confidence 467899987777766 444 4567887 8999999988888777766543 233579999988532 22
Q ss_pred HHHhcccCCccEEEEccCC
Q 022369 140 EAWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~ 158 (298)
+. ..++.|+++.++.+
T Consensus 78 ~~---~~~~fDiIf~DPPy 93 (152)
T d2esra1 78 DC---LTGRFDLVFLDPPY 93 (152)
T ss_dssp HH---BCSCEEEEEECCSS
T ss_pred cc---cccccceeEechhh
Confidence 22 23579999887653
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.016 Score=44.26 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=39.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANE 104 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~ 104 (298)
.+++||.++|.|-|.=.|+-+|..|+++|+.|.++..+...+.+
T Consensus 35 i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~ 78 (170)
T d1a4ia1 35 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDE 78 (170)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHH
T ss_pred cccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHH
Confidence 36899999999999999999999999999999999887655543
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=95.01 E-value=0.034 Score=44.85 Aligned_cols=81 Identities=11% Similarity=0.195 Sum_probs=53.9
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC-------------------chHHHHHHHHHHHhhcCCCCCccE
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN-------------------LKAANELIQKWQEEWSGKGLPLNI 122 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 122 (298)
+++++|+|.| .||+|..+|..|++.|. ++.++|.+ ..+.+.+.+.+.+..+. .++
T Consensus 28 L~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~----~~i 102 (247)
T d1jw9b_ 28 LKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPH----IAI 102 (247)
T ss_dssp HHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTT----SEE
T ss_pred HhCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcc----cch
Confidence 5568999999 67899999999999998 89998753 24666676667665443 355
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcccCCccEEEEcc
Q 022369 123 EAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNA 156 (298)
Q Consensus 123 ~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnna 156 (298)
..+...+++.. ..... ...|++|.+.
T Consensus 103 ~~~~~~~~~~~-~~~~~-------~~~divid~~ 128 (247)
T d1jw9b_ 103 TPVNALLDDAE-LAALI-------AEHDLVLDCT 128 (247)
T ss_dssp EEECSCCCHHH-HHHHH-------HTSSEEEECC
T ss_pred hhhhhhhhhcc-ccccc-------cccceeeecc
Confidence 55544444333 22221 2467777654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.93 E-value=0.23 Score=41.54 Aligned_cols=117 Identities=9% Similarity=0.032 Sum_probs=72.4
Q ss_pred CCEEEEeCCC-CchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 65 DLTCIVTGST-SGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 65 ~k~vlITGas-~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
|+.||=.|+. |+++.+ +++.|+ +|+.++.+++.++...+.+... +...++.++..|+.+ ....+
T Consensus 146 g~~VLDl~~g~G~~si~----~a~~ga~~V~~vD~s~~al~~a~~N~~~n----gl~~~~~~~~~d~~~------~~~~~ 211 (324)
T d2as0a2 146 GDRVLDVFTYTGGFAIH----AAIAGADEVIGIDKSPRAIETAKENAKLN----GVEDRMKFIVGSAFE------EMEKL 211 (324)
T ss_dssp TCEEEETTCTTTHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHT----TCGGGEEEEESCHHH------HHHHH
T ss_pred CCeeecccCcccchhhh----hhhcCCcEEEeecCCHHHHHHHHHHHHHc----CCCccceeeechhhh------hhHHH
Confidence 6888877776 555544 445676 8999999999888887776653 233478888887643 22333
Q ss_pred hcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcC
Q 022369 143 NGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNS 207 (298)
Q Consensus 143 ~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS 207 (298)
.....++|++|.++...... ..+..... .....+.+.+++.++. +|.++..+.
T Consensus 212 ~~~~~~fD~Vi~DpP~~~~~------~~~~~~~~----~~y~~l~~~a~~ll~p--GG~lv~~s~ 264 (324)
T d2as0a2 212 QKKGEKFDIVVLDPPAFVQH------EKDLKAGL----RAYFNVNFAGLNLVKD--GGILVTCSC 264 (324)
T ss_dssp HHTTCCEEEEEECCCCSCSS------GGGHHHHH----HHHHHHHHHHHTTEEE--EEEEEEEEC
T ss_pred HhccCCCCchhcCCccccCC------HHHHHHHH----HHHHHHHHHHHHHcCC--CcEEEEEeC
Confidence 33345799999998754321 12222221 1334466666666654 456666554
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=94.92 E-value=0.19 Score=37.81 Aligned_cols=122 Identities=7% Similarity=0.064 Sum_probs=66.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHc-----CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAES-----GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~-----G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.+.|.||++.....+...++.+ +.+|+++|.++++++...+.+.......+...++... . |.. +.+
T Consensus 5 KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---d~~---eal-- 75 (167)
T d1u8xx1 5 SIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-T---DPE---EAF-- 75 (167)
T ss_dssp EEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-S---CHH---HHH--
T ss_pred eEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec-C---Chh---hcc--
Confidence 4666677654322233333322 2489999999999986666665543332222233322 1 221 111
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhc----------------hHHHHHHHHHhhhhhcCC-CCeEEE
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNH----------------LAPALLSILLFPSLIRGS-PSRIIN 204 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~----------------~~~~~l~~~~lp~m~~~~-~g~Iv~ 204 (298)
..-|++|+.+|.... .-..-++.+..|+ +-.....+.+.+.+.+.. .+-+++
T Consensus 76 -----~~AD~Vvitag~~~~------~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~ 144 (167)
T d1u8xx1 76 -----TDVDFVMAHIRVGKY------AMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLN 144 (167)
T ss_dssp -----SSCSEEEECCCTTHH------HHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred -----CCCCEEEECCCcCCC------CceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEE
Confidence 368999999998532 1122233444442 223456667777776654 456666
Q ss_pred EcCC
Q 022369 205 VNSV 208 (298)
Q Consensus 205 isS~ 208 (298)
+|..
T Consensus 145 ~TNP 148 (167)
T d1u8xx1 145 YSNP 148 (167)
T ss_dssp CCSC
T ss_pred eCCH
Confidence 6663
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=94.79 E-value=0.34 Score=40.17 Aligned_cols=83 Identities=14% Similarity=0.021 Sum_probs=54.8
Q ss_pred CCEEEEeCCC-CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGST-SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas-~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
++.||=..+. |+++. .+++.|++|+.++.+...++...+.+....-. ..++.++..|+.+ ++++..
T Consensus 133 ~~rVLdlf~~tG~~sl----~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~---~~~~~~i~~D~~~------~l~~~~ 199 (309)
T d2igta1 133 PLKVLNLFGYTGVASL----VAAAAGAEVTHVDASKKAIGWAKENQVLAGLE---QAPIRWICEDAMK------FIQREE 199 (309)
T ss_dssp CCEEEEETCTTCHHHH----HHHHTTCEEEEECSCHHHHHHHHHHHHHHTCT---TSCEEEECSCHHH------HHHHHH
T ss_pred CCeEEEecCCCcHHHH----HHHhCCCeEEEEeChHHHHHHHHHhhhhhccc---CCcEEEEeCCHHH------hHHHHh
Confidence 5677755555 44444 34567999999999999888887776553211 1268888877643 334444
Q ss_pred cccCCccEEEEccCCCC
Q 022369 144 GRLGPLHVLINNAGIFS 160 (298)
Q Consensus 144 ~~~g~idilVnnag~~~ 160 (298)
..-.+.|++|.+...+.
T Consensus 200 ~~~~~fD~IilDPP~f~ 216 (309)
T d2igta1 200 RRGSTYDIILTDPPKFG 216 (309)
T ss_dssp HHTCCBSEEEECCCSEE
T ss_pred hcCCCCCEEEECCCccc
Confidence 44457999999987543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.76 E-value=0.13 Score=39.26 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=55.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+|.+||=.|+++| .++..+|+.+.+|+.++.+++.++.+.+.+++. +...++.++.+|..+ ..
T Consensus 33 ~g~~VLDiGcGsG---~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~----gl~~~v~~~~gda~~----------~~ 95 (186)
T d1l3ia_ 33 KNDVAVDVGCGTG---GVTLELAGRVRRVYAIDRNPEAISTTEMNLQRH----GLGDNVTLMEGDAPE----------AL 95 (186)
T ss_dssp TTCEEEEESCTTS---HHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHT----TCCTTEEEEESCHHH----------HH
T ss_pred CCCEEEEEECCeE---cccccccccceEEEEecCCHHHHHHHHHHHHHc----CCCcceEEEECchhh----------cc
Confidence 4678998999877 344556777889999999999999888877663 333588999988421 12
Q ss_pred cccCCccEEEEccC
Q 022369 144 GRLGPLHVLINNAG 157 (298)
Q Consensus 144 ~~~g~idilVnnag 157 (298)
.....+|.++.+.+
T Consensus 96 ~~~~~~D~v~~~~~ 109 (186)
T d1l3ia_ 96 CKIPDIDIAVVGGS 109 (186)
T ss_dssp TTSCCEEEEEESCC
T ss_pred cccCCcCEEEEeCc
Confidence 23457998887643
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.72 E-value=0.1 Score=38.91 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=51.4
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHH-------HHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKW-------QEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
+-+. |.+-+|.++|+.|+++|++|.+.+|+.++.+.+.+.- .+... ....+..-+.+.+.++.++.
T Consensus 4 Ig~I-GlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~------~~diii~~v~~~~~~~~v~~ 76 (162)
T d3cuma2 4 IAFI-GLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQ------GADVVISMLPASQHVEGLYL 76 (162)
T ss_dssp EEEE-CCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHT------SCSEEEECCSCHHHHHHHHH
T ss_pred EEEE-EEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhcc------ccCeeeecccchhhHHHHHh
Confidence 3444 5678999999999999999999999988877664321 11111 22344455566666666654
Q ss_pred HH---hcccCCccEEEEccCC
Q 022369 141 AW---NGRLGPLHVLINNAGI 158 (298)
Q Consensus 141 ~~---~~~~g~idilVnnag~ 158 (298)
.. .....+=+++|++..+
T Consensus 77 ~~~~~~~~l~~g~iiid~st~ 97 (162)
T d3cuma2 77 DDDGLLAHIAPGTLVLECSTI 97 (162)
T ss_dssp STTCHHHHSCTTCEEEECSCC
T ss_pred ccccccccCCCCCEEEECCCC
Confidence 32 2222222456655444
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.43 E-value=0.1 Score=39.02 Aligned_cols=89 Identities=10% Similarity=0.106 Sum_probs=54.5
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCchHHHHHHHHHHH-h-hcC----CCCCccEEEEEcCCCCHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNLKAANELIQKWQE-E-WSG----KGLPLNIEAMELDLLSLDSVVR 137 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~~~~~~~~~~~~~-~-~~~----~~~~~~~~~~~~D~s~~~~v~~ 137 (298)
|.++|.|. |-||.++|+.|.+.|. +|+.+||+++.++...+.-.- . ... ......+.++ .+-++.+.+
T Consensus 2 k~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIil---a~p~~~~~~ 77 (171)
T d2g5ca2 2 QNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVML---SSPVRTFRE 77 (171)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEE---CSCHHHHHH
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccc---cCCchhhhh
Confidence 45788875 8999999999999995 788899998887766543110 0 000 0000122222 123567778
Q ss_pred HHHHHhcccCCccEEEEccCC
Q 022369 138 FSEAWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 138 ~~~~~~~~~g~idilVnnag~ 158 (298)
+++++......=.+++..+++
T Consensus 78 vl~~l~~~~~~~~ii~d~~s~ 98 (171)
T d2g5ca2 78 IAKKLSYILSEDATVTDQGSV 98 (171)
T ss_dssp HHHHHHHHSCTTCEEEECCSC
T ss_pred hhhhhhccccccccccccccc
Confidence 888877665444455555554
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.02 Score=50.36 Aligned_cols=63 Identities=17% Similarity=0.221 Sum_probs=45.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcC-------------------chHHHHHHHHHHHhhcCCCCCccEE
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRN-------------------LKAANELIQKWQEEWSGKGLPLNIE 123 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (298)
++..|||.|+ ||||-++++.|+..|. ++.++|.+ ..+.+.+.+.+++..+. .++.
T Consensus 36 ~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~----v~i~ 110 (426)
T d1yovb1 36 DTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN----CNVV 110 (426)
T ss_dssp HHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTT----CCCE
T ss_pred hcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCC----CceE
Confidence 4557999998 6799999999999998 89998753 24666677777665443 3555
Q ss_pred EEEcCCCC
Q 022369 124 AMELDLLS 131 (298)
Q Consensus 124 ~~~~D~s~ 131 (298)
.+..++.+
T Consensus 111 ~~~~~i~~ 118 (426)
T d1yovb1 111 PHFNKIQD 118 (426)
T ss_dssp EECSCGGG
T ss_pred eeeccccc
Confidence 55555543
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.29 E-value=0.57 Score=35.64 Aligned_cols=38 Identities=11% Similarity=-0.046 Sum_probs=33.2
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
..+.++++.|. |.|.||+++|+.+...|++|+..++..
T Consensus 40 ~~l~~~~vgii-G~G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d1sc6a1 40 FEARGKKLGII-GYGHIGTQLGILAESLGMYVYFYDIEN 77 (188)
T ss_dssp CCSTTCEEEEE-CCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred ccccceEEEEe-ecccchhhhhhhcccccceEeeccccc
Confidence 46889999888 567899999999999999999998753
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=94.24 E-value=0.022 Score=43.51 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=32.9
Q ss_pred CCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHH
Q 022369 73 STSGIGREIARQLAESGAHVVMAVRNLKAANELIQK 108 (298)
Q Consensus 73 as~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~ 108 (298)
|.+-+|.++|+.|+++|++|.+++|++++.+++.++
T Consensus 8 GlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~ 43 (178)
T d1pgja2 8 GLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKA 43 (178)
T ss_dssp CCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc
Confidence 677899999999999999999999999998888766
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.14 E-value=0.2 Score=38.79 Aligned_cols=73 Identities=14% Similarity=-0.051 Sum_probs=54.4
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
..||=.|+++|. ++..|++.|++|+.+|.+++.++...+.+.... ..+..+..|..+.. ..
T Consensus 39 ~~ILDiGcG~G~---~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~------~~~~~~~~d~~~l~----------~~ 99 (226)
T d1ve3a1 39 GKVLDLACGVGG---FSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE------SNVEFIVGDARKLS----------FE 99 (226)
T ss_dssp CEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCTTSCC----------SC
T ss_pred CEEEEECCCcch---hhhhHhhhhcccccccccccchhhhhhhhcccc------cccccccccccccc----------cc
Confidence 568999999887 667889999999999999888887776665532 35677778877633 11
Q ss_pred cCCccEEEEccC
Q 022369 146 LGPLHVLINNAG 157 (298)
Q Consensus 146 ~g~idilVnnag 157 (298)
.+..|+++.+..
T Consensus 100 ~~~fD~I~~~~~ 111 (226)
T d1ve3a1 100 DKTFDYVIFIDS 111 (226)
T ss_dssp TTCEEEEEEESC
T ss_pred CcCceEEEEecc
Confidence 247999887654
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.03 E-value=0.035 Score=42.29 Aligned_cols=38 Identities=32% Similarity=0.402 Sum_probs=35.3
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN 98 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~ 98 (298)
.+++||.++|.|-|.=.|+-+|..|+++|+.|..+..+
T Consensus 25 ~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~ 62 (171)
T d1edza1 25 NRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN 62 (171)
T ss_dssp CTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred CCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence 48999999999999999999999999999999988755
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=94.03 E-value=0.25 Score=40.28 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=55.2
Q ss_pred CEEEEeCCCCc-hHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGSTSG-IGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas~G-IG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+.++-.|+++| |+.+++ + ...++|+.+|.+++.++-+.+..+.. +...++.+...|+.+. ..+
T Consensus 112 ~~vld~g~GsG~i~~~la-~--~~~~~v~a~Dis~~Al~~A~~Na~~~----~~~~~~~i~~~~~~~~---------~~~ 175 (271)
T d1nv8a_ 112 KTVADIGTGSGAIGVSVA-K--FSDAIVFATDVSSKAVEIARKNAERH----GVSDRFFVRKGEFLEP---------FKE 175 (271)
T ss_dssp CEEEEESCTTSHHHHHHH-H--HSSCEEEEEESCHHHHHHHHHHHHHT----TCTTSEEEEESSTTGG---------GGG
T ss_pred cEEEEeeeeeehhhhhhh-h--cccceeeechhhhhHHHHHHHHHHHc----CCCceeEEeecccccc---------ccc
Confidence 45665666655 555544 3 35679999999999998887776653 2234778888898754 233
Q ss_pred ccCCccEEEEccCCCC
Q 022369 145 RLGPLHVLINNAGIFS 160 (298)
Q Consensus 145 ~~g~idilVnnag~~~ 160 (298)
..+++|++|.|..+..
T Consensus 176 ~~~~fDlIVsNPPYI~ 191 (271)
T d1nv8a_ 176 KFASIEMILSNPPYVK 191 (271)
T ss_dssp GTTTCCEEEECCCCBC
T ss_pred ccCcccEEEEcccccC
Confidence 4578999999998754
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.01 E-value=0.13 Score=39.29 Aligned_cols=42 Identities=14% Similarity=0.076 Sum_probs=34.5
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQK 108 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~ 108 (298)
-.|+|.||+ -.|++-++.....|++|.+.|.++++++++.+.
T Consensus 30 a~VvViGaG-vaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l 71 (183)
T d1l7da1 30 ARVLVFGVG-VAGLQAIATAKRLGAVVMATDVRAATKEQVESL 71 (183)
T ss_dssp CEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHT
T ss_pred cEEEEEcCc-HHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHh
Confidence 457777764 578899999999999999999999988877543
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=93.96 E-value=0.31 Score=37.65 Aligned_cols=40 Identities=23% Similarity=0.167 Sum_probs=34.9
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~ 100 (298)
-..+.||++.|.|- |.||+.+|+.+...|++|+..++...
T Consensus 38 g~el~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~ 77 (197)
T d1j4aa1 38 GREVRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRN 77 (197)
T ss_dssp BCCGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CccccCCeEEEecc-cccchhHHHhHhhhcccccccCcccc
Confidence 35789999999986 57999999999999999999987654
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=93.88 E-value=0.026 Score=42.15 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=30.9
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAA 102 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~ 102 (298)
.+.|.|+ |.||..+|..|++.|+.|.+++|+++..
T Consensus 2 kI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~ 36 (167)
T d1ks9a2 2 KITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPY 36 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSE
T ss_pred EEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHh
Confidence 4778888 9999999999999999999999987643
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=93.85 E-value=0.2 Score=40.43 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=52.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|+.||=.|+++|+ ++..+++.|++|+.+|.+++.++.+.+..+.. +....++..|+.+ ..
T Consensus 120 ~g~~VLDiGcGsG~---l~i~aa~~g~~V~gvDis~~av~~A~~na~~n------~~~~~~~~~d~~~----------~~ 180 (254)
T d2nxca1 120 PGDKVLDLGTGSGV---LAIAAEKLGGKALGVDIDPMVLPQAEANAKRN------GVRPRFLEGSLEA----------AL 180 (254)
T ss_dssp TTCEEEEETCTTSH---HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHT------TCCCEEEESCHHH----------HG
T ss_pred ccCEEEEcccchhH---HHHHHHhcCCEEEEEECChHHHHHHHHHHHHc------CCceeEEeccccc----------cc
Confidence 47899999999996 34567788999999999999999887776553 1345677776421 11
Q ss_pred cccCCccEEEEc
Q 022369 144 GRLGPLHVLINN 155 (298)
Q Consensus 144 ~~~g~idilVnn 155 (298)
..++.|+++.|
T Consensus 181 -~~~~fD~V~an 191 (254)
T d2nxca1 181 -PFGPFDLLVAN 191 (254)
T ss_dssp -GGCCEEEEEEE
T ss_pred -cccccchhhhc
Confidence 12579999876
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.83 E-value=0.059 Score=40.53 Aligned_cols=39 Identities=21% Similarity=0.310 Sum_probs=35.1
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA 101 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~ 101 (298)
.+.||+++|.|=+ -||+.+|+.+...|++|++++.++-+
T Consensus 21 ~l~Gk~v~V~GyG-~iG~g~A~~~rg~G~~V~v~e~dp~~ 59 (163)
T d1li4a1 21 MIAGKVAVVAGYG-DVGKGCAQALRGFGARVIITEIDPIN 59 (163)
T ss_dssp CCTTCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred eecCCEEEEeccc-cccHHHHHHHHhCCCeeEeeecccch
Confidence 5789999999866 79999999999999999999999754
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.75 E-value=0.16 Score=38.78 Aligned_cols=43 Identities=28% Similarity=0.234 Sum_probs=36.4
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHH
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAA 102 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~ 102 (298)
....+.||++.|.| .+.||+++|+.+...|++|+..++.....
T Consensus 38 ~~~~l~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~~~ 80 (184)
T d1ygya1 38 SGTEIFGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVSPA 80 (184)
T ss_dssp CBCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred ccccccceeeeecc-ccchhHHHHHHhhhccceEEeecCCCChh
Confidence 34568899998888 57899999999999999999999876543
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=93.74 E-value=0.12 Score=41.08 Aligned_cols=76 Identities=9% Similarity=0.002 Sum_probs=56.7
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
..++.+|=.|++.|. ++..|+++|.+|+.+|.+++-++.+.+.+... +.++.++..|+.+.+
T Consensus 36 ~~~~~vLDiGCG~G~---~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~------~~~v~~~~~d~~~~~--------- 97 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGN---LTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ------GLKPRLACQDISNLN--------- 97 (246)
T ss_dssp CCTTEEEEETCTTST---THHHHGGGSSEEEEECSCHHHHHHHHHHHHHT------TCCCEEECCCGGGCC---------
T ss_pred CCCCeEEEEeCcCCH---HHHHHHHhCCccEeeccchhhhhhcccccccc------Cccceeeccchhhhc---------
Confidence 345789999999886 78899999999999999988887776655432 236888888886542
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
..+.+|++++..+.
T Consensus 98 --~~~~fD~i~~~~~~ 111 (246)
T d1y8ca_ 98 --INRKFDLITCCLDS 111 (246)
T ss_dssp --CSCCEEEEEECTTG
T ss_pred --ccccccccceeeee
Confidence 12479988865443
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.15 Score=42.33 Aligned_cols=77 Identities=16% Similarity=0.150 Sum_probs=53.6
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
..+||+||-.|++.|+ ++..+|+.|+ +|+.++.++.. ....+...+. +...++.++..|+.+..
T Consensus 33 ~~~~~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~~-~~a~~~~~~~----~~~~~i~~~~~~~~~l~------- 97 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEIL-YQAMDIIRLN----KLEDTITLIKGKIEEVH------- 97 (311)
T ss_dssp GTTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTHH-HHHHHHHHHT----TCTTTEEEEESCTTTSC-------
T ss_pred cCCcCEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHHH-HHHHHHHHHh----CCCccceEEEeeHHHhc-------
Confidence 3568999999999886 6777888997 79999988653 3333333332 23358999999987753
Q ss_pred HHhcccCCccEEEEcc
Q 022369 141 AWNGRLGPLHVLINNA 156 (298)
Q Consensus 141 ~~~~~~g~idilVnna 156 (298)
....++|++|...
T Consensus 98 ---~~~~~~D~Ivse~ 110 (311)
T d2fyta1 98 ---LPVEKVDVIISEW 110 (311)
T ss_dssp ---CSCSCEEEEEECC
T ss_pred ---CccccceEEEEee
Confidence 1124799998753
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.70 E-value=0.16 Score=38.70 Aligned_cols=40 Identities=30% Similarity=0.373 Sum_probs=35.5
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~ 100 (298)
...+.||++.|.|.+. ||+.+|+.+...|++|+..+|++.
T Consensus 37 ~~~l~gk~vgIiG~G~-IG~~va~~l~~~g~~v~~~d~~~~ 76 (181)
T d1qp8a1 37 IPLIQGEKVAVLGLGE-IGTRVGKILAALGAQVRGFSRTPK 76 (181)
T ss_dssp CCCCTTCEEEEESCST-HHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CCcccCceEEEecccc-ccccceeeeecccccccccccccc
Confidence 3468999999999876 999999999999999999998743
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=93.53 E-value=0.15 Score=39.39 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=34.5
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~ 100 (298)
-..+.||++.|.|. |.||+++|+.+...|++|+..++...
T Consensus 44 ~~eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 83 (193)
T d1mx3a1 44 AARIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLS 83 (193)
T ss_dssp CCCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred ceeeeCceEEEecc-ccccccceeeeeccccceeeccCccc
Confidence 35689999999965 57999999999999999999998643
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=93.27 E-value=0.093 Score=41.82 Aligned_cols=48 Identities=19% Similarity=0.343 Sum_probs=40.8
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHH
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQK 108 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~ 108 (298)
..+++||+++|-|- +..|..+|+.|.+.|++|+.++.+...++....+
T Consensus 34 ~~~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~ 81 (230)
T d1leha1 34 SDSLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAE 81 (230)
T ss_dssp SCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred CCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHh
Confidence 34688999998875 5789999999999999999999998888776554
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=92.93 E-value=0.13 Score=38.07 Aligned_cols=88 Identities=15% Similarity=0.049 Sum_probs=55.1
Q ss_pred EEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccCC
Q 022369 69 IVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGP 148 (298)
Q Consensus 69 lITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g~ 148 (298)
-+.|- +-+|..+|++|++.|+.+ +..|+.++.++..++..........-.....+...+.+.+.+....+.+.+...+
T Consensus 4 g~IGl-G~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~~~ 81 (156)
T d2cvza2 4 AFIGL-GAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYLRE 81 (156)
T ss_dssp EEECC-STTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCCT
T ss_pred EEEeH-HHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhccccccccc
Confidence 34444 779999999999988754 6788888877766654221111000013334445566778888888888776555
Q ss_pred ccEEEEccCC
Q 022369 149 LHVLINNAGI 158 (298)
Q Consensus 149 idilVnnag~ 158 (298)
-.++|++.-.
T Consensus 82 ~~~iid~sT~ 91 (156)
T d2cvza2 82 GTYWVDATSG 91 (156)
T ss_dssp TEEEEECSCC
T ss_pred cccccccccC
Confidence 5566665543
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=92.93 E-value=0.085 Score=38.96 Aligned_cols=40 Identities=18% Similarity=0.305 Sum_probs=33.2
Q ss_pred EEEeCCCCchHHHHHHHHHHcC-CEEEEEEcCchHHHHHHHH
Q 022369 68 CIVTGSTSGIGREIARQLAESG-AHVVMAVRNLKAANELIQK 108 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G-~~Vil~~r~~~~~~~~~~~ 108 (298)
+.+.|+ |-+|.++++.|.+.| .+|.+++|++++.+++.++
T Consensus 3 I~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~ 43 (152)
T d1yqga2 3 VYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE 43 (152)
T ss_dssp EEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH
T ss_pred EEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhh
Confidence 445555 889999999999888 7999999999888877655
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=92.86 E-value=0.042 Score=42.54 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=32.2
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHH
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELI 106 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~ 106 (298)
.+.|.||+. .|.++|..|++.|.+|.+++|+++..+++.
T Consensus 9 KI~ViGaG~-wGtAlA~~La~~g~~V~l~~r~~~~~~~i~ 47 (189)
T d1n1ea2 9 KAVVFGSGA-FGTALAMVLSKKCREVCVWHMNEEEVRLVN 47 (189)
T ss_dssp EEEEECCSH-HHHHHHHHHHTTEEEEEEECSCHHHHHHHH
T ss_pred eEEEECCCH-HHHHHHHHHHHcCCeEEEEEecHHHHHHHh
Confidence 466777654 999999999999999999999977666543
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.81 E-value=0.13 Score=37.32 Aligned_cols=76 Identities=16% Similarity=0.231 Sum_probs=52.4
Q ss_pred EEEEeCCCCchHHHHHHHHHHc-CCEEEEE-EcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 67 TCIVTGSTSGIGREIARQLAES-GAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~-G~~Vil~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
.+.|.|++|-+|+++++...+. ++.++.. ++. +.+... .. .+ .. +..|+|.++.+.+.++.+.+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~-~~~~~~----~~----~~--~D---vvIDFS~p~~~~~~~~~~~~ 66 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG-DPLSLL----TD----GN--TE---VVIDFTHPDVVMGNLEFLID 66 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT-CCTHHH----HT----TT--CS---EEEECCCTTTHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC-Cchhhh----cc----cc--CC---EEEEcccHHHHHHHHHHHHh
Confidence 3789999999999999988764 5676643 443 222221 11 01 11 56899999999999999887
Q ss_pred ccCCccEEEEccCC
Q 022369 145 RLGPLHVLINNAGI 158 (298)
Q Consensus 145 ~~g~idilVnnag~ 158 (298)
. ++-++|-..|.
T Consensus 67 ~--~~~~ViGTTG~ 78 (135)
T d1yl7a1 67 N--GIHAVVGTTGF 78 (135)
T ss_dssp T--TCEEEECCCCC
T ss_pred c--CCCEEEecccc
Confidence 6 67777766664
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.80 E-value=0.067 Score=41.62 Aligned_cols=33 Identities=15% Similarity=0.101 Sum_probs=29.3
Q ss_pred CCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 73 STSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 73 as~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
|.|-+|..+|..||++|++|+.+|.|.++.+.+
T Consensus 7 GlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~l 39 (202)
T d1mv8a2 7 GLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLI 39 (202)
T ss_dssp CCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHh
Confidence 778999999999999999999999997766554
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.72 E-value=0.098 Score=36.71 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=29.0
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~ 100 (298)
|.++|.|| |-+|.++|..|++.|.+|.++.|...
T Consensus 23 ~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 23 KSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence 56777776 47999999999999999999998743
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=92.62 E-value=0.23 Score=35.52 Aligned_cols=73 Identities=14% Similarity=0.243 Sum_probs=54.4
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEE-EcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcc
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMA-VRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGR 145 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~ 145 (298)
.+.|.|++|-+|++++..+.++|++++.. +++.... ... .+ +..|+|.++...+.++...+.
T Consensus 2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~~~----------~~~----~D---VvIDFS~p~~~~~~l~~~~~~ 64 (128)
T d1vm6a3 2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGVEE----------LDS----PD---VVIDFSSPEALPKTVDLCKKY 64 (128)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEEEE----------CSC----CS---EEEECSCGGGHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcHHH----------hcc----CC---EEEEecCHHHHHHHHHHHHhc
Confidence 48899999999999999999999987754 4442210 010 12 467999999999999998876
Q ss_pred cCCccEEEEccCC
Q 022369 146 LGPLHVLINNAGI 158 (298)
Q Consensus 146 ~g~idilVnnag~ 158 (298)
++-+++-..|.
T Consensus 65 --~~p~ViGTTG~ 75 (128)
T d1vm6a3 65 --RAGLVLGTTAL 75 (128)
T ss_dssp --TCEEEECCCSC
T ss_pred --CCCEEEEcCCC
Confidence 57777766664
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.59 E-value=0.11 Score=38.35 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=29.2
Q ss_pred CCEEEE-eCCCCchHHHHHHHHHHcCCEEEEEEcCch
Q 022369 65 DLTCIV-TGSTSGIGREIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 65 ~k~vlI-TGas~GIG~~~a~~la~~G~~Vil~~r~~~ 100 (298)
++.++| -.+++-||.++|..|+++|++|.++.+...
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~ 75 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL 75 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence 344444 456789999999999999999999998753
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.57 E-value=0.12 Score=40.01 Aligned_cols=83 Identities=11% Similarity=0.123 Sum_probs=62.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
+.++=+|.|+||..+++...+ . +.+|+.+|++++.++...+.+... +.++.++..++++...+ .+...
T Consensus 25 ~~~lD~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~~l~~a~~~l~~~------~~r~~~~~~~f~~~~~~---~~~~~- 92 (192)
T d1m6ya2 25 KIILDCTVGEGGHSRAILEHC-P-GCRIIGIDVDSEVLRIAEEKLKEF------SDRVSLFKVSYREADFL---LKTLG- 92 (192)
T ss_dssp CEEEETTCTTSHHHHHHHHHC-T-TCEEEEEESCHHHHHHHHHHTGGG------TTTEEEEECCGGGHHHH---HHHTT-
T ss_pred CEEEEecCCCcHHHHHHHhcC-C-CCeEEEeechHHHHHHHHHhhccc------cccccchhHHHhhHHHH---HHHcC-
Confidence 345568888999999999887 3 469999999999988887766442 24799999999875543 23221
Q ss_pred ccCCccEEEEccCCCC
Q 022369 145 RLGPLHVLINNAGIFS 160 (298)
Q Consensus 145 ~~g~idilVnnag~~~ 160 (298)
.+.+|.++...|++.
T Consensus 93 -~~~vdgIl~DlGvSs 107 (192)
T d1m6ya2 93 -IEKVDGILMDLGVST 107 (192)
T ss_dssp -CSCEEEEEEECSCCH
T ss_pred -CCCcceeeeccchhH
Confidence 358999999999854
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=92.24 E-value=0.81 Score=34.19 Aligned_cols=125 Identities=12% Similarity=0.092 Sum_probs=67.8
Q ss_pred EEEEeCCCC-chHHHHHHHHHHc----CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 67 TCIVTGSTS-GIGREIARQLAES----GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 67 ~vlITGas~-GIG~~~a~~la~~----G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.+.|.||++ |...++...++.. +.+++++|.++++++.....++......+. ...+... +|.+ +.+
T Consensus 4 KI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~--~~~i~~~--td~~---eaL-- 74 (171)
T d1obba1 4 KIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGA--DLKFEKT--MNLD---DVI-- 74 (171)
T ss_dssp EEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTC--CCEEEEE--SCHH---HHH--
T ss_pred EEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCC--CeEEEEe--CChh---hcc--
Confidence 456666532 3444455555533 459999999999998777666654433322 2222221 2222 111
Q ss_pred HhcccCCccEEEEccCCCCCCCCCccChhh-HHHHH---------hhh---------chHHHHHHHHHhhhhhcCC-CCe
Q 022369 142 WNGRLGPLHVLINNAGIFSIGEPQKFSKDG-YEEHM---------QVN---------HLAPALLSILLFPSLIRGS-PSR 201 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~~~~~~~~~~~~~-~~~~~---------~vN---------~~~~~~l~~~~lp~m~~~~-~g~ 201 (298)
..-|++|+++++..... .+.++ ..... ..+ .....-..+.+.+.+.+.. .+-
T Consensus 75 -----~dad~Vv~~~~~g~~~~---~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~ 146 (171)
T d1obba1 75 -----IDADFVINTAMVGGHTY---LEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAW 146 (171)
T ss_dssp -----TTCSEEEECCCTTHHHH---HHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCE
T ss_pred -----cCCCeEeeecccccccc---eeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeE
Confidence 36899999988753110 00000 00000 011 2346678888888887754 567
Q ss_pred EEEEcCC
Q 022369 202 IINVNSV 208 (298)
Q Consensus 202 Iv~isS~ 208 (298)
++|+|..
T Consensus 147 ~i~~TNP 153 (171)
T d1obba1 147 YLQAANP 153 (171)
T ss_dssp EEECSSC
T ss_pred EEEECCh
Confidence 7777764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=92.11 E-value=0.14 Score=38.73 Aligned_cols=67 Identities=19% Similarity=0.063 Sum_probs=47.2
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCC-------CCCccEEEEEcCCCCHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGK-------GLPLNIEAMELDLLSLD 133 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~D~s~~~ 133 (298)
+|+.||..|++.| ..+..||++|++|+.+|.+++.++...+...+..... ..+....++.+|..+..
T Consensus 20 ~~~rvLd~GCG~G---~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 93 (201)
T d1pjza_ 20 PGARVLVPLCGKS---QDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALT 93 (201)
T ss_dssp TTCEEEETTTCCS---HHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSST
T ss_pred CCCEEEEecCcCC---HHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccc
Confidence 4689999999988 4788999999999999999888887766553211000 00124567777777654
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.05 E-value=0.35 Score=40.06 Aligned_cols=76 Identities=14% Similarity=0.182 Sum_probs=52.4
Q ss_pred CCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 63 VNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 63 ~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
.+||+||-.|++.|+ ++..+|+.|+ +|+.++.++. .....+.+... +...++.++..|+.+.+
T Consensus 32 ~~~~~VLDiGcG~G~---ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n----~~~~~v~~~~~~~~~~~-------- 95 (316)
T d1oria_ 32 FKDKVVLDVGSGTGI---LCMFAAKAGARKVIGIECSSI-SDYAVKIVKAN----KLDHVVTIIKGKVEEVE-------- 95 (316)
T ss_dssp HTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHT----TCTTTEEEEESCTTTCC--------
T ss_pred CCcCEEEEEecCCcH---HHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHh----CCccccceEeccHHHcc--------
Confidence 468999999999885 5677888897 7888997754 44443333322 23357999999987743
Q ss_pred HhcccCCccEEEEcc
Q 022369 142 WNGRLGPLHVLINNA 156 (298)
Q Consensus 142 ~~~~~g~idilVnna 156 (298)
....++|+++...
T Consensus 96 --~~~~~~D~ivs~~ 108 (316)
T d1oria_ 96 --LPVEKVDIIISEW 108 (316)
T ss_dssp --CSSSCEEEEEECC
T ss_pred --cccceeEEEeeee
Confidence 1224789988754
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.97 E-value=0.38 Score=39.46 Aligned_cols=36 Identities=31% Similarity=0.341 Sum_probs=32.1
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR 97 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r 97 (298)
.+++||+++|-|- |-.|..+|+.|.+.|++|+.++.
T Consensus 32 ~~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD 67 (293)
T d1hwxa1 32 PGFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGE 67 (293)
T ss_dssp SSSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEc
Confidence 4789999999987 68999999999999999998864
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=91.91 E-value=0.14 Score=36.24 Aligned_cols=34 Identities=29% Similarity=0.244 Sum_probs=28.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
+|.++|.|| +-+|.++|..|++.|.+|.++.+..
T Consensus 30 ~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 30 VNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCEEEEECC-hHHHHHHHHHhhccceEEEEEEecC
Confidence 467777754 5999999999999999999998864
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=91.86 E-value=0.54 Score=35.16 Aligned_cols=80 Identities=14% Similarity=0.075 Sum_probs=48.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+|+.+|=.|+++|. ++.+++.+|++|+.++.+++.++.+.+.++... ...++.. . +.+.. .....
T Consensus 41 ~g~~vLDl~~G~G~---~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~----~~~~v~~--~---~~d~~---~~~~~ 105 (171)
T d1ws6a1 41 RRGRFLDPFAGSGA---VGLEAASEGWEAVLVEKDPEAVRLLKENVRRTG----LGARVVA--L---PVEVF---LPEAK 105 (171)
T ss_dssp TCCEEEEETCSSCH---HHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHT----CCCEEEC--S---CHHHH---HHHHH
T ss_pred CCCeEEEeccccch---hhhhhhhccchhhhcccCHHHHhhhhHHHHhhc----cccceee--e---ehhcc---ccccc
Confidence 35667766665552 344567789999999999999888877776541 1123322 2 22222 22222
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
....+.|+++.++.+
T Consensus 106 ~~~~~fD~If~DPPY 120 (171)
T d1ws6a1 106 AQGERFTVAFMAPPY 120 (171)
T ss_dssp HTTCCEEEEEECCCT
T ss_pred ccCCccceeEEcccc
Confidence 333479999988754
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.86 E-value=0.084 Score=39.07 Aligned_cols=37 Identities=11% Similarity=0.296 Sum_probs=32.5
Q ss_pred CCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHH
Q 022369 73 STSGIGREIARQLAESGAHVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 73 as~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~ 109 (298)
|+|-+|.++++.|.+.|++|++.+|+.++.+++.++.
T Consensus 7 G~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~ 43 (152)
T d2ahra2 7 GVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQL 43 (152)
T ss_dssp CCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH
T ss_pred eccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc
Confidence 6778999999999999999999999998888776554
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.83 E-value=0.69 Score=34.52 Aligned_cols=120 Identities=9% Similarity=0.010 Sum_probs=62.1
Q ss_pred EEEeCC-CCchHHHHHHHHHHcC----CEEEEEEcCchH--HHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 68 CIVTGS-TSGIGREIARQLAESG----AHVVMAVRNLKA--ANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 68 vlITGa-s~GIG~~~a~~la~~G----~~Vil~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
+.|.|| +.|.+..++..+.... ..++++|.+++. ++.+...........+. .+.. ...+|.. +
T Consensus 4 I~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~--~~~~--~~~td~~------~ 73 (169)
T d1s6ya1 4 IATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV--PIEI--HLTLDRR------R 73 (169)
T ss_dssp EEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC--CCEE--EEESCHH------H
T ss_pred EEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCC--Ccee--eecCCch------h
Confidence 455555 5677777777666432 489999998754 44443322222221111 1111 2223332 1
Q ss_pred HHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhh----------------chHHHHHHHHHhhhhhcCC-CCeEE
Q 022369 141 AWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVN----------------HLAPALLSILLFPSLIRGS-PSRII 203 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN----------------~~~~~~l~~~~lp~m~~~~-~g~Iv 203 (298)
.+ ..-|++|+.||+.... . ..-++.+..| ......+.+.+.+.+.+.. .+-++
T Consensus 74 al----~gaDvVv~ta~~~~~~---~---~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i 143 (169)
T d1s6ya1 74 AL----DGADFVTTQFRVGGLE---A---RAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLI 143 (169)
T ss_dssp HH----TTCSEEEECCCTTHHH---H---HHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred hc----CCCCEEEEccccCCCC---C---eehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEE
Confidence 11 2579999999985310 0 1111122211 2345567777788887755 45555
Q ss_pred EEcC
Q 022369 204 NVNS 207 (298)
Q Consensus 204 ~isS 207 (298)
++|.
T Consensus 144 ~vtN 147 (169)
T d1s6ya1 144 NFTN 147 (169)
T ss_dssp ECSS
T ss_pred EeCC
Confidence 5555
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=91.81 E-value=0.95 Score=34.12 Aligned_cols=82 Identities=12% Similarity=0.093 Sum_probs=57.1
Q ss_pred CCCCEEEEeCCC-CchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHH
Q 022369 63 VNDLTCIVTGST-SGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSE 140 (298)
Q Consensus 63 ~~~k~vlITGas-~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~ 140 (298)
.+|+.+|=..|+ |++|.+ .+.+|+ +|+.++.+.+.++.+.+.++... ...++.++..|+.+ +++
T Consensus 40 ~~~~~vLDlfaGsG~~g~e----a~srGa~~v~~ve~~~~a~~~~~~N~~~~~----~~~~~~i~~~D~~~------~l~ 105 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIE----AVSRGMDKSICIEKNFAALKVIKENIAITK----EPEKFEVRKMDANR------ALE 105 (182)
T ss_dssp CSSCEEEETTCTTCHHHHH----HHHTTCSEEEEEESCHHHHHHHHHHHHHHT----CGGGEEEEESCHHH------HHH
T ss_pred cCCCEEEEcccccccccce----eeecchhHHHHHHHHHHHHHHHHHHhhhhh----cccccccccccchh------hhh
Confidence 467888755555 557775 556888 79999999998888877776542 22478888888743 344
Q ss_pred HHhcccCCccEEEEccCC
Q 022369 141 AWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 141 ~~~~~~g~idilVnnag~ 158 (298)
+..+.-.+.|+++.++.+
T Consensus 106 ~~~~~~~~fDlIflDPPY 123 (182)
T d2fhpa1 106 QFYEEKLQFDLVLLDPPY 123 (182)
T ss_dssp HHHHTTCCEEEEEECCCG
T ss_pred hhcccCCCcceEEechhh
Confidence 444444579999988764
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=91.81 E-value=0.13 Score=36.48 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=29.6
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~ 100 (298)
+|.++|.|| |-+|.++|..|+++|.+|.++.+++.
T Consensus 30 ~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 30 QSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence 367777765 58999999999999999999998753
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=91.80 E-value=0.09 Score=37.41 Aligned_cols=33 Identities=21% Similarity=0.243 Sum_probs=28.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
|.++|.|| +-||.++|..|++.|.+|.++.|++
T Consensus 26 ~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~ 58 (123)
T d1dxla2 26 KKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFAS 58 (123)
T ss_dssp SEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEcc
Confidence 67777776 5899999999999999999998874
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.69 E-value=0.33 Score=38.02 Aligned_cols=43 Identities=14% Similarity=0.072 Sum_probs=36.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKW 109 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~ 109 (298)
.+..||.-|++.| ..+..||++|++|+.+|-+++.++.+.++.
T Consensus 45 ~~~rvLd~GCG~G---~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~ 87 (229)
T d2bzga1 45 SGLRVFFPLCGKA---VEMKWFADRGHSVVGVEISELGIQEFFTEQ 87 (229)
T ss_dssp CSCEEEETTCTTC---THHHHHHHTTCEEEEECSCHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCc---HHHHHHHhCCCcEEEEeCCHHHHHHHHHHh
Confidence 4678999999987 568889999999999999988887766554
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.51 E-value=0.34 Score=39.81 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.3
Q ss_pred CCchHHHHHHHHHHcCCEEEEEEc
Q 022369 74 TSGIGREIARQLAESGAHVVMAVR 97 (298)
Q Consensus 74 s~GIG~~~a~~la~~G~~Vil~~r 97 (298)
||..|.++|+.|.++|++|+++.+
T Consensus 45 SGk~G~alA~~~~~~Ga~V~li~g 68 (290)
T d1p9oa_ 45 SGRRGATSAEAFLAAGYGVLFLYR 68 (290)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEEE
T ss_pred chHHHHHHHHHHHHcCCEEEEEec
Confidence 457899999999999999999854
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=91.46 E-value=0.29 Score=38.67 Aligned_cols=73 Identities=19% Similarity=0.094 Sum_probs=54.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
++.+|=.|++.| .++..|+++|++|+.++.+++-++.+.+.+.+. +.++.++..|+.+.+
T Consensus 42 ~~~iLDiGcGtG---~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~------~~~i~~~~~d~~~l~----------- 101 (251)
T d1wzna1 42 VRRVLDLACGTG---IPTLELAERGYEVVGLDLHEEMLRVARRKAKER------NLKIEFLQGDVLEIA----------- 101 (251)
T ss_dssp CCEEEEETCTTC---HHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT------TCCCEEEESCGGGCC-----------
T ss_pred CCEEEEeCCCCC---ccchhhcccceEEEEEeeccccccccccccccc------cccchheehhhhhcc-----------
Confidence 468999999987 456779999999999999987777766665542 136889999986643
Q ss_pred ccCCccEEEEccC
Q 022369 145 RLGPLHVLINNAG 157 (298)
Q Consensus 145 ~~g~idilVnnag 157 (298)
.-+..|++++.-+
T Consensus 102 ~~~~fD~I~~~~~ 114 (251)
T d1wzna1 102 FKNEFDAVTMFFS 114 (251)
T ss_dssp CCSCEEEEEECSS
T ss_pred cccccchHhhhhh
Confidence 1136898877543
|
| >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.45 E-value=0.67 Score=34.15 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=55.5
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+|+.+.|.+.++|.|.-++-.+.+.|.++.-. + +++.+++++..+......+..-+..+ .+.+...+.++.+.
T Consensus 2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~l--~----~~t~~~L~~~lp~~~~~~NPlD~~~~-~~~~~~~~~l~~~~ 74 (163)
T d2csua3 2 RGNKVAIMTNAGGPGVLTADELDKRGLKLATL--E----EKTIEELRSFLPPMAAVKNPVDMIAS-ARGEDYYRTAKLLL 74 (163)
T ss_dssp SSSEEEEEESCHHHHHHHHHHHHTTTCEECCC--C----HHHHHHHHHHSCTTCEESSEEECCTT-CCHHHHHHHHHHHH
T ss_pred CCCeEEEEECChHHHHHHHHHHHHcCCccCCC--C----HHHHHHHHHhCCCcccCCCcccccCC-CCHHHHHHHHHHHH
Confidence 57889999999999999999999999777533 3 34444455544432211223333333 35677888887777
Q ss_pred cccCCccEEEEcc
Q 022369 144 GRLGPLHVLINNA 156 (298)
Q Consensus 144 ~~~g~idilVnna 156 (298)
+. +++|.++...
T Consensus 75 ~d-~~vd~v~v~~ 86 (163)
T d2csua3 75 QD-PNVDMLIAIC 86 (163)
T ss_dssp HS-TTCSEEEEEE
T ss_pred cC-CCcCEEEEee
Confidence 65 6799765543
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=91.26 E-value=0.5 Score=36.71 Aligned_cols=80 Identities=13% Similarity=0.085 Sum_probs=55.8
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+|.+||-.|+++|--.++.-++...+.+|+.++.+++.++...+.+....- .++.++..|..+..
T Consensus 75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-----~n~~~~~~d~~~~~---------- 139 (213)
T d1dl5a1 75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-----ENVIFVCGDGYYGV---------- 139 (213)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-----CSEEEEESCGGGCC----------
T ss_pred ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-----cccccccCchHHcc----------
Confidence 367899999988876665555555566999999999888888777765321 36777777765311
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
...+..|.++.+++.
T Consensus 140 ~~~~~fD~I~~~~~~ 154 (213)
T d1dl5a1 140 PEFSPYDVIFVTVGV 154 (213)
T ss_dssp GGGCCEEEEEECSBB
T ss_pred ccccchhhhhhhccH
Confidence 112579999988775
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.23 E-value=0.11 Score=37.01 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=29.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
|.++|.||+ -||.++|..|++.|.+|.++.|+.
T Consensus 23 k~vvIvGgG-~iG~E~A~~l~~~G~~Vtlv~~~~ 55 (125)
T d3grsa2 23 GRSVIVGAG-YIAVEMAGILSALGSKTSLMIRHD 55 (125)
T ss_dssp SEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEEcCC-ccHHHHHHHHhcCCcEEEEEeecc
Confidence 678888876 599999999999999999999863
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=90.86 E-value=0.21 Score=34.97 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=29.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
.+|.++|.|| +-||.++|..|++.|.+|.++.|.+
T Consensus 21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~ 55 (121)
T d1mo9a2 21 PGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTE 55 (121)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccc
Confidence 3678887776 5799999999999999999998864
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=90.60 E-value=0.44 Score=36.30 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=34.4
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~ 100 (298)
..++.++++.|.|. |.||+++|+.+...|.+|+..++...
T Consensus 39 ~~~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~ 78 (188)
T d2naca1 39 AYDLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRL 78 (188)
T ss_dssp CCCCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred ceeccccceeeccc-cccchhhhhhhhccCceEEEEeeccc
Confidence 45688999999884 57999999999999999999998643
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.49 E-value=0.32 Score=36.78 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=26.8
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~ 100 (298)
+.|.|+ |-.|.++|..|++.|.+|.+++|..+
T Consensus 3 I~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~ 34 (180)
T d1txga2 3 VSILGA-GAMGSALSVPLVDNGNEVRIWGTEFD 34 (180)
T ss_dssp EEEESC-CHHHHHHHHHHHHHCCEEEEECCGGG
T ss_pred EEEECC-CHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 455555 67999999999999999999999654
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=90.28 E-value=0.27 Score=37.40 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=31.7
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
+..++|.|+|.||+ --|++.|..|+++|++|+++.++.
T Consensus 39 ~~~~~k~V~IIGaG-PAGL~AA~~la~~G~~Vtl~E~~~ 76 (179)
T d1ps9a3 39 PAVQKKNLAVVGAG-PAGLAFAINAAARGHQVTLFDAHS 76 (179)
T ss_dssp SCSSCCEEEEECCS-HHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCCCcEEEEECcc-HHHHHHHHHHHhhccceEEEeccC
Confidence 34567888888875 678999999999999999999864
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=89.82 E-value=0.63 Score=32.23 Aligned_cols=33 Identities=21% Similarity=0.141 Sum_probs=27.5
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
|.++|.|| +-+|.++|..|++.|.+|.++.|.+
T Consensus 22 ~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEECC-ChhhHHHHHHhhccccEEEEEeecc
Confidence 45666654 5799999999999999999998864
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.74 E-value=0.2 Score=36.75 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=28.2
Q ss_pred CCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 73 STSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 73 as~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
|.+-+|.++|+.|+++|++|+..+++..+....
T Consensus 7 G~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~ 39 (152)
T d1i36a2 7 GFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIE 39 (152)
T ss_dssp SCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHH
Confidence 568999999999999999999998887665544
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=89.64 E-value=0.27 Score=38.55 Aligned_cols=33 Identities=36% Similarity=0.377 Sum_probs=27.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
|.|+|.||+ -.|.+.|..|+++|++|.+++|+.
T Consensus 7 ~kVvVIGaG-iaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 7 KRVVVLGSG-VIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CEEEEECCS-HHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcEEEECcc-HHHHHHHHHHHHCCCCEEEEeCCC
Confidence 567777764 689999999999999999999863
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=89.59 E-value=0.24 Score=34.51 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=27.3
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
|.++|.| ++-+|.++|..|++.|.+|.++.|.+
T Consensus 22 ~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~~~ 54 (115)
T d1lvla2 22 QHLVVVG-GGYIGLELGIAYRKLGAQVSVVEARE 54 (115)
T ss_dssp SEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEEC-CCHHHHHHHHHHhhcccceEEEeeec
Confidence 5566665 46899999999999999999998763
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.40 E-value=0.43 Score=37.49 Aligned_cols=85 Identities=11% Similarity=-0.001 Sum_probs=60.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+|..||-.|+++|--.++.-+++....+|+.++++++-++...+.+.+..........+.+...|..+..
T Consensus 76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~---------- 145 (224)
T d1i1na_ 76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY---------- 145 (224)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC----------
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc----------
Confidence 3678999999999888877778877789999999998888877777643211000135777777864211
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
...+..|.++.+++.
T Consensus 146 ~~~~~fD~I~~~~~~ 160 (224)
T d1i1na_ 146 AEEAPYDAIHVGAAA 160 (224)
T ss_dssp GGGCCEEEEEECSBB
T ss_pred chhhhhhhhhhhcch
Confidence 112579999988875
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.18 E-value=0.81 Score=35.64 Aligned_cols=78 Identities=15% Similarity=0.095 Sum_probs=57.2
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
|..||..|+++|--.++.-+++ |.+|+.++++++-.+...+.+.+.. -.++.++..|..+- ..
T Consensus 79 g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g-----~~nv~~~~gd~~~g----------~~ 141 (215)
T d1jg1a_ 79 GMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAG-----VKNVHVILGDGSKG----------FP 141 (215)
T ss_dssp TCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEESCGGGC----------CG
T ss_pred cceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcC-----CceeEEEECccccC----------Cc
Confidence 5689999999998888777776 4679999999776666666665532 14799999997641 12
Q ss_pred ccCCccEEEEccCCC
Q 022369 145 RLGPLHVLINNAGIF 159 (298)
Q Consensus 145 ~~g~idilVnnag~~ 159 (298)
..++.|.++.++++.
T Consensus 142 ~~~pfD~Iiv~~a~~ 156 (215)
T d1jg1a_ 142 PKAPYDVIIVTAGAP 156 (215)
T ss_dssp GGCCEEEEEECSBBS
T ss_pred ccCcceeEEeecccc
Confidence 236899998888764
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.15 E-value=0.2 Score=44.88 Aligned_cols=32 Identities=16% Similarity=0.246 Sum_probs=28.0
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGA-HVVMAVR 97 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r 97 (298)
+..|+|.|+ +|+|.++|+.|+..|. ++.++|.
T Consensus 25 ~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~ 57 (529)
T d1yova1 25 SAHVCLINA-TATGTEILKNLVLPGIGSFTIIDG 57 (529)
T ss_dssp HCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECC
T ss_pred CCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcC
Confidence 468999987 7999999999999997 8888865
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=89.12 E-value=0.22 Score=34.90 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=28.1
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
|.++|.|| |-||.++|..|++.|.+|.++.|..
T Consensus 23 ~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 23 KKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp SEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence 56777765 4799999999999999999999863
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=89.04 E-value=0.11 Score=40.24 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=27.9
Q ss_pred CEEEEeCCCCchHHH-----HHHHHHHcCCEEEEEE
Q 022369 66 LTCIVTGSTSGIGRE-----IARQLAESGAHVVMAV 96 (298)
Q Consensus 66 k~vlITGas~GIG~~-----~a~~la~~G~~Vil~~ 96 (298)
|...|||.++|.|+. +|+.|+++|.+|.+++
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id 37 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence 678999999999986 7889999999999986
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=89.00 E-value=1.1 Score=33.74 Aligned_cols=75 Identities=21% Similarity=0.169 Sum_probs=53.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.++.||=.|++.|- .+..|+++|++|+.++.+++.++.+.+...+. +. ..+.+...|+.+..-
T Consensus 30 ~~grvLDiGcG~G~---~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~----~~-~~~~~~~~d~~~~~~--------- 92 (198)
T d2i6ga1 30 APGRTLDLGCGNGR---NSLYLAANGYDVTAWDKNPASMANLERIKAAE----GL-DNLQTDLVDLNTLTF--------- 92 (198)
T ss_dssp CSCEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----TC-TTEEEEECCTTTCCC---------
T ss_pred CCCcEEEECCCCCH---HHHHHHHHhhhhccccCcHHHHHHHHHHhhhc----cc-cchhhhheecccccc---------
Confidence 34579999997654 56788899999999999988888776665542 11 257788888776440
Q ss_pred cccCCccEEEEccC
Q 022369 144 GRLGPLHVLINNAG 157 (298)
Q Consensus 144 ~~~g~idilVnnag 157 (298)
-+..|+++.+.-
T Consensus 93 --~~~fD~I~~~~~ 104 (198)
T d2i6ga1 93 --DGEYDFILSTVV 104 (198)
T ss_dssp --CCCEEEEEEESC
T ss_pred --cccccEEEEeee
Confidence 146898886554
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=88.95 E-value=1.5 Score=32.94 Aligned_cols=78 Identities=12% Similarity=0.121 Sum_probs=52.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.++++|=.+|++| +++.+.+.+|+ +|+.++.+.+.++.+.+.+..... .++.++..|+. +.+
T Consensus 43 ~~~~vLDlfaGsG---~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-----~~~~ii~~d~~---------~~l 105 (183)
T d2fpoa1 43 VDAQCLDCFAGSG---ALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-----GNARVVNSNAM---------SFL 105 (183)
T ss_dssp TTCEEEETTCTTC---HHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-----CSEEEECSCHH---------HHH
T ss_pred chhhhhhhhcccc---ceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-----cceeeeeeccc---------ccc
Confidence 4677776666544 24445667888 899999999998888777765321 25777777732 223
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
.......|+++.++.+
T Consensus 106 ~~~~~~fDlIf~DPPY 121 (183)
T d2fpoa1 106 AQKGTPHNIVFVDPPF 121 (183)
T ss_dssp SSCCCCEEEEEECCSS
T ss_pred cccccccCEEEEcCcc
Confidence 3334578999998764
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=88.93 E-value=1.1 Score=31.07 Aligned_cols=81 Identities=10% Similarity=0.115 Sum_probs=54.2
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
||.+||.--..-+-..+...|-+.|++|+..+.+.+..- +.+++.. ..+.++-.++.+.+ --++++++++
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~a~~~~~al---~~~~~~~------~dliilD~~mp~~~-G~e~~~~ir~ 70 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAV---EKYKELK------PDIVTMDITMPEMN-GIDAIKEIMK 70 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHH---HHHHHHC------CSEEEEECSCGGGC-HHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCHHHHH---HHHHhcc------CCEEEEecCCCCCC-HHHHHHHHHH
Confidence 788999999999999999999999999987666543333 2333321 24555544444443 3456677776
Q ss_pred ccCCccEEEEc
Q 022369 145 RLGPLHVLINN 155 (298)
Q Consensus 145 ~~g~idilVnn 155 (298)
...++-+++..
T Consensus 71 ~~~~~pvi~ls 81 (118)
T d1u0sy_ 71 IDPNAKIIVCS 81 (118)
T ss_dssp HCTTCCEEEEE
T ss_pred hCCCCcEEEEE
Confidence 66677777664
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=88.76 E-value=0.17 Score=39.26 Aligned_cols=40 Identities=20% Similarity=0.122 Sum_probs=34.7
Q ss_pred CCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch
Q 022369 60 LPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 60 ~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~ 100 (298)
-..+.||++.|.|.+ .||+++|+.+...|++|+..++...
T Consensus 40 ~~~l~~ktvgIiG~G-~IG~~va~~l~~fg~~v~~~d~~~~ 79 (199)
T d1dxya1 40 GKELGQQTVGVMGTG-HIGQVAIKLFKGFGAKVIAYDPYPM 79 (199)
T ss_dssp CCCGGGSEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred cccccceeeeeeecc-cccccccccccccceeeeccCCccc
Confidence 357889999999875 6999999999999999999998643
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=88.66 E-value=0.66 Score=36.42 Aligned_cols=75 Identities=19% Similarity=-0.020 Sum_probs=51.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.|..||-.|+++|-- +..|++.+.+|+.++++++..+...+.+.+ . .++.++..|..+--
T Consensus 70 ~g~~VLdIG~GsGy~---ta~La~l~~~V~aiE~~~~~~~~A~~~~~~----~---~nv~~~~~d~~~g~---------- 129 (224)
T d1vbfa_ 70 KGQKVLEIGTGIGYY---TALIAEIVDKVVSVEINEKMYNYASKLLSY----Y---NNIKLILGDGTLGY---------- 129 (224)
T ss_dssp TTCEEEEECCTTSHH---HHHHHHHSSEEEEEESCHHHHHHHHHHHTT----C---SSEEEEESCGGGCC----------
T ss_pred ccceEEEecCCCCHH---HHHHHHHhcccccccccHHHHHHHHHHHhc----c---cccccccCchhhcc----------
Confidence 367899999998853 345666778999999997777665443321 1 37888888875411
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
...++.|.++.+++.
T Consensus 130 ~~~~pfD~Iiv~~a~ 144 (224)
T d1vbfa_ 130 EEEKPYDRVVVWATA 144 (224)
T ss_dssp GGGCCEEEEEESSBB
T ss_pred hhhhhHHHHHhhcch
Confidence 112579999888775
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=88.57 E-value=0.21 Score=39.91 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=27.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN 98 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~ 98 (298)
+|.|+|.||+ -=|+..|.+|++.|++|+++.++
T Consensus 1 ~KkV~IIGaG-~aGL~aA~~La~~G~~V~vlE~~ 33 (373)
T d1seza1 1 AKRVAVIGAG-VSGLAAAYKLKIHGLNVTVFEAE 33 (373)
T ss_dssp CCEEEEECCS-HHHHHHHHHHHTTSCEEEEECSS
T ss_pred CCEEEEECcC-HHHHHHHHHHHhCCCCEEEEeCC
Confidence 5778888765 45788899999999999999875
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.55 E-value=0.23 Score=35.09 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=28.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
|.++|.|| |-||.++|..|++.|.+|.++.|+.
T Consensus 24 ~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~ 56 (122)
T d1v59a2 24 KRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQP 56 (122)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CeEEEECC-CchHHHHHHHHHhhCcceeEEEecc
Confidence 56777775 4799999999999999999998873
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=88.37 E-value=0.2 Score=40.74 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=28.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
+.|.|+|.||+ --|+..|..|+++|++|+++.++.
T Consensus 29 ~pkkV~IIGaG-~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 29 NPKHVVIVGAG-MAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SCCEEEEECCB-HHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECCC-HHHHHHHHHHHHCCCCEEEEeCCC
Confidence 34678888876 348899999999999999998763
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=88.14 E-value=1.1 Score=34.51 Aligned_cols=77 Identities=12% Similarity=0.002 Sum_probs=54.8
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
++.||=.|++.|.- +..++++|++|+.++-+++-++...+.+.... ..++.++..|..+.. +
T Consensus 16 ~~rVLDiGcG~G~~---~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~-----~~~i~~~~~d~~~l~----~------ 77 (231)
T d1vl5a_ 16 NEEVLDVATGGGHV---ANAFAPFVKKVVAFDLTEDILKVARAFIEGNG-----HQQVEYVQGDAEQMP----F------ 77 (231)
T ss_dssp CCEEEEETCTTCHH---HHHHGGGSSEEEEEESCHHHHHHHHHHHHHTT-----CCSEEEEECCC-CCC----S------
T ss_pred cCEEEEecccCcHH---HHHHHHhCCEEEEEECCHHHHhhhhhcccccc-----ccccccccccccccc----c------
Confidence 46899999998854 46678899999999999888777655554421 137889999987642 0
Q ss_pred ccCCccEEEEccCCC
Q 022369 145 RLGPLHVLINNAGIF 159 (298)
Q Consensus 145 ~~g~idilVnnag~~ 159 (298)
..+..|+++.+....
T Consensus 78 ~~~~fD~v~~~~~l~ 92 (231)
T d1vl5a_ 78 TDERFHIVTCRIAAH 92 (231)
T ss_dssp CTTCEEEEEEESCGG
T ss_pred ccccccccccccccc
Confidence 125799998776553
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=88.07 E-value=3.6 Score=29.99 Aligned_cols=74 Identities=11% Similarity=-0.077 Sum_probs=40.9
Q ss_pred EEEeCCCCchHHHHHHH--HHHc----CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 68 CIVTGSTSGIGREIARQ--LAES----GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 68 vlITGas~GIG~~~a~~--la~~----G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+.|.||++ .|...+.. +... +..++++|.++++++...+....... .. ..+.. . ++.+ +.
T Consensus 3 IaiIGaGs-~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~-~~--~~~~~---t-~~~~------~~ 68 (162)
T d1up7a1 3 IAVIGGGS-SYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVK-DR--FKVLI---S-DTFE------GA 68 (162)
T ss_dssp EEEETTTC-TTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHT-TS--SEEEE---C-SSHH------HH
T ss_pred EEEECCCH-HHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhc-cC--ceEEE---e-cCcc------cc
Confidence 56777754 45544433 2222 35899999999998865444333222 11 12221 1 2222 11
Q ss_pred HhcccCCccEEEEccCCC
Q 022369 142 WNGRLGPLHVLINNAGIF 159 (298)
Q Consensus 142 ~~~~~g~idilVnnag~~ 159 (298)
+ .+-|++|+.||..
T Consensus 69 l----~~aDvVVita~~~ 82 (162)
T d1up7a1 69 V----VDAKYVIFQFRPG 82 (162)
T ss_dssp H----TTCSEEEECCCTT
T ss_pred c----CCCCEEEEecccC
Confidence 1 3579999999975
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=87.95 E-value=0.2 Score=40.44 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=31.7
Q ss_pred CCCEEEEeCCCCchHHHH-----HHHHHHcCCEEEEEEcCch
Q 022369 64 NDLTCIVTGSTSGIGREI-----ARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~-----a~~la~~G~~Vil~~r~~~ 100 (298)
.++.++|+.|-||.|+.. |..|+++|.+|.++|-++.
T Consensus 18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~ 59 (279)
T d1ihua2 18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA 59 (279)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 356788888899999985 8999999999999998865
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=87.77 E-value=1.8 Score=32.54 Aligned_cols=78 Identities=21% Similarity=0.124 Sum_probs=55.6
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
.+++||=.|+++| .++..+++.+.+|+.++.++..++.+.+.+....- ...++.++..|+.+.- .
T Consensus 52 ~~~~VLDiGcG~G---~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l---~~~~i~~~~~d~~~~~---------~ 116 (194)
T d1dusa_ 52 KDDDILDLGCGYG---VIGIALADEVKSTTMADINRRAIKLAKENIKLNNL---DNYDIRVVHSDLYENV---------K 116 (194)
T ss_dssp TTCEEEEETCTTS---HHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC---TTSCEEEEECSTTTTC---------T
T ss_pred CCCeEEEEeecCC---hhHHHHHhhccccceeeeccccchhHHHHHHHhCC---ccceEEEEEcchhhhh---------c
Confidence 4678998888877 44566777888999999998888877666654311 1136889999986421 1
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
+ +..|+++.|..+
T Consensus 117 ~--~~fD~Ii~~~p~ 129 (194)
T d1dusa_ 117 D--RKYNKIITNPPI 129 (194)
T ss_dssp T--SCEEEEEECCCS
T ss_pred c--CCceEEEEcccE
Confidence 1 479999988654
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=87.51 E-value=0.39 Score=34.35 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=28.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
+|.++|.|| |-+|.++|..|++.|.+|.++.+..
T Consensus 35 ~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~ 68 (133)
T d1q1ra2 35 DNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAA 68 (133)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCEEEEECC-chHHHHHHHHHHhhCcceeeeeecc
Confidence 466777754 6899999999999999999998864
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=87.39 E-value=0.36 Score=38.88 Aligned_cols=36 Identities=25% Similarity=0.284 Sum_probs=32.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR 97 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r 97 (298)
.+++||+++|.| .+-.|..+|+.|.+.|++|+.++.
T Consensus 32 ~~l~g~~v~IQG-fGnVG~~~a~~L~e~GakvvavsD 67 (255)
T d1bgva1 32 DTLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLSG 67 (255)
T ss_dssp CCSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEec
Confidence 468899999999 688999999999999999997753
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=87.18 E-value=0.41 Score=37.49 Aligned_cols=38 Identities=29% Similarity=0.315 Sum_probs=31.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
+.-.+|.++|.||+ --|...|..|+++|++|.++.++.
T Consensus 45 ~~~~~k~VvIIGaG-pAGl~aA~~l~~~G~~v~l~E~~~ 82 (233)
T d1djqa3 45 QTKNKDSVLIVGAG-PSGSEAARVLMESGYTVHLTDTAE 82 (233)
T ss_dssp CCSSCCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cccCCceEEEEccc-HHHHHHHHHHHHhccceeeEeecc
Confidence 34567889999886 457899999999999999998754
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=87.11 E-value=0.89 Score=34.66 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=34.5
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA 101 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~ 101 (298)
..+.||++.|.|. |.||+++|+.+...|++|+..++....
T Consensus 43 ~~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~ 82 (191)
T d1gdha1 43 EKLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRAS 82 (191)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCC
T ss_pred ceecccceEEeec-ccchHHHHHHHHhhccccccccccccc
Confidence 4678999999976 579999999999999999999986553
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.08 E-value=0.27 Score=37.03 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=27.4
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL 99 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~ 99 (298)
+|.|+|.||+ -.|++.|..|+++|+ .|.++.|+.
T Consensus 4 ~~kVaIIGaG-paGl~aA~~l~~~G~~~V~v~E~~~ 38 (196)
T d1gtea4 4 SAKIALLGAG-PASISCASFLARLGYSDITIFEKQE 38 (196)
T ss_dssp GCCEEEECCS-HHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCEEEEECCh-HHHHHHHHHHHHCCCCeEEEEEecC
Confidence 4567777764 689999999999999 599998864
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=87.03 E-value=1.6 Score=34.95 Aligned_cols=78 Identities=14% Similarity=0.068 Sum_probs=54.1
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+|.++|=.|++.|. ++..|+++ |++|+.++-++..++...+..... +...++.++.+|..+..
T Consensus 67 ~~~~vLDiGcG~G~---~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~----gl~~~v~~~~~d~~~l~--------- 130 (282)
T d2o57a1 67 RQAKGLDLGAGYGG---AARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA----GLADNITVKYGSFLEIP--------- 130 (282)
T ss_dssp TTCEEEEETCTTSH---HHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHH----TCTTTEEEEECCTTSCS---------
T ss_pred CCCEEEEeCCCCcH---HHhhhhccCCcEEEEEeccchhhhhhhcccccc----ccccccccccccccccc---------
Confidence 36789999998773 45556554 889999999988777766665543 23347999999987632
Q ss_pred hcccCCccEEEEccCC
Q 022369 143 NGRLGPLHVLINNAGI 158 (298)
Q Consensus 143 ~~~~g~idilVnnag~ 158 (298)
-.-+.+|+++.+-..
T Consensus 131 -~~~~sfD~V~~~~~l 145 (282)
T d2o57a1 131 -CEDNSYDFIWSQDAF 145 (282)
T ss_dssp -SCTTCEEEEEEESCG
T ss_pred -ccccccchhhccchh
Confidence 012579998875443
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.99 E-value=1.2 Score=36.86 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=50.9
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
+|++||-.|++.|+ ++..+|+.|+ +|+.++.++ .++.+.+...+. +...++.++..|+.+.+
T Consensus 38 ~~~~VLDlGcGtG~---ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~----~~~~~i~~i~~~~~~l~--------- 100 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGI---LSMFAAKHGAKHVIGVDMSS-IIEMAKELVELN----GFSDKITLLRGKLEDVH--------- 100 (328)
T ss_dssp TTCEEEEETCTTSH---HHHHHHHTCCSEEEEEESST-HHHHHHHHHHHT----TCTTTEEEEESCTTTSC---------
T ss_pred CcCEEEEeCCCCCH---HHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHh----CccccceEEEeehhhcc---------
Confidence 57999999999884 5667788898 788888774 344333333332 33358999999987643
Q ss_pred hcccCCccEEEEcc
Q 022369 143 NGRLGPLHVLINNA 156 (298)
Q Consensus 143 ~~~~g~idilVnna 156 (298)
-.-..+|+++...
T Consensus 101 -~~~~~~D~i~se~ 113 (328)
T d1g6q1_ 101 -LPFPKVDIIISEW 113 (328)
T ss_dssp -CSSSCEEEEEECC
T ss_pred -CcccceeEEEEEe
Confidence 1114689988764
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=86.93 E-value=0.52 Score=35.02 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=34.4
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchH
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKA 101 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~ 101 (298)
-+.||+++|.|=+ -+|+.+|+.+...|++|+++..++-+
T Consensus 20 ~laGk~vvV~GYG-~vGrG~A~~~rg~Ga~V~V~E~DPi~ 58 (163)
T d1v8ba1 20 LISGKIVVICGYG-DVGKGCASSMKGLGARVYITEIDPIC 58 (163)
T ss_dssp CCTTSEEEEECCS-HHHHHHHHHHHHHTCEEEEECSCHHH
T ss_pred eecCCEEEEeccc-ccchhHHHHHHhCCCEEEEEecCchh
Confidence 4679999998865 59999999999999999999999754
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=86.68 E-value=0.32 Score=39.95 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=24.3
Q ss_pred CEEEEeCCCCchHH-----HHHHHHHHcCCEEEEEEcC
Q 022369 66 LTCIVTGSTSGIGR-----EIARQLAESGAHVVMAVRN 98 (298)
Q Consensus 66 k~vlITGas~GIG~-----~~a~~la~~G~~Vil~~r~ 98 (298)
|.++|++|++| |. +++++|.++|++|..++..
T Consensus 1 kkili~~~GtG-GHv~~a~al~~~L~~~G~eV~~i~~~ 37 (351)
T d1f0ka_ 1 KRLMVMAGGTG-GHVFPGLAVAHHLMAQGWQVRWLGTA 37 (351)
T ss_dssp CEEEEECCSSH-HHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred CEEEEEcCCcH-HHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 45666666556 76 5889999999999987754
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.67 E-value=0.27 Score=38.30 Aligned_cols=34 Identities=15% Similarity=0.317 Sum_probs=30.0
Q ss_pred CCEEEEeCCCCchHHH-----HHHHHHHcCCEEEEEEcC
Q 022369 65 DLTCIVTGSTSGIGRE-----IARQLAESGAHVVMAVRN 98 (298)
Q Consensus 65 ~k~vlITGas~GIG~~-----~a~~la~~G~~Vil~~r~ 98 (298)
||++.|+|+-||.|+. +|..|+++|.+|+++|-+
T Consensus 2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D 40 (237)
T d1g3qa_ 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 6899999999999986 678888999999999855
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=86.63 E-value=0.4 Score=33.94 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=28.3
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
+.++|.|| |-||.++|..|++.|.+|.++.+.+
T Consensus 27 ~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 27 GKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp SEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeec
Confidence 66777776 4799999999999999999998753
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=86.55 E-value=2.2 Score=33.43 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=29.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHH-cCCEEEEEE
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAE-SGAHVVMAV 96 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~-~G~~Vil~~ 96 (298)
+++|++++|-| .+-.|..+|+.|++ .|++|+.++
T Consensus 28 ~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vs 62 (234)
T d1b26a1 28 DPKKATVAVQG-FGNVGQFAALLISQELGSKVVAVS 62 (234)
T ss_dssp CTTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEee
Confidence 57899999886 78899999999985 599999776
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=86.28 E-value=1.6 Score=29.17 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=25.8
Q ss_pred CEEEEeCCCCchHH-HHHHHHHHcCCEEEEEEcCch
Q 022369 66 LTCIVTGSTSGIGR-EIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 66 k~vlITGas~GIG~-~~a~~la~~G~~Vil~~r~~~ 100 (298)
|.+.+.|-+ |+|. ++|+.|.++|+.|...|++..
T Consensus 9 ~~ihfiGig-G~GMs~LA~~L~~~G~~VsGSD~~~~ 43 (96)
T d1p3da1 9 QQIHFIGIG-GAGMSGIAEILLNEGYQISGSDIADG 43 (96)
T ss_dssp CEEEEETTT-STTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred CEEEEEEEC-HHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 556666543 5564 479999999999999998754
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=86.18 E-value=0.89 Score=36.47 Aligned_cols=73 Identities=14% Similarity=0.097 Sum_probs=51.7
Q ss_pred CCCEEEEeCCC-CchHHHHHHHHHHcC-CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHH
Q 022369 64 NDLTCIVTGST-SGIGREIARQLAESG-AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEA 141 (298)
Q Consensus 64 ~~k~vlITGas-~GIG~~~a~~la~~G-~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~ 141 (298)
+|+++|-.||+ |+++..+| ++| ++|+.++.|++..+.+.+.+... +...++.++..|..+..
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a----~~~~~~V~avd~n~~a~~~~~~N~~~n----~l~~~v~~~~~D~~~~~-------- 170 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIA----VYGKAKVIAIEKDPYTFKFLVENIHLN----KVEDRMSAYNMDNRDFP-------- 170 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHH----HHTCCEEEEECCCHHHHHHHHHHHHHT----TCTTTEEEECSCTTTCC--------
T ss_pred CccEEEECcceEcHHHHHHH----HhCCcEEEEecCCHHHHHHHHHHHHHh----CCCceEEEEEcchHHhc--------
Confidence 47889988887 45555554 445 59999999999888877776553 33357999999987532
Q ss_pred HhcccCCccEEEEc
Q 022369 142 WNGRLGPLHVLINN 155 (298)
Q Consensus 142 ~~~~~g~idilVnn 155 (298)
. -+..|.+|.|
T Consensus 171 --~-~~~~D~Ii~~ 181 (260)
T d2frna1 171 --G-ENIADRILMG 181 (260)
T ss_dssp --C-CSCEEEEEEC
T ss_pred --c-CCCCCEEEEC
Confidence 1 1468988765
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=86.01 E-value=0.55 Score=32.77 Aligned_cols=33 Identities=27% Similarity=0.158 Sum_probs=28.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
+.++|.|| |-||.++|..|++.|.+|.++.++.
T Consensus 23 ~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 23 GKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp SEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CeEEEECC-ChHHHHHHHHHHHcCCceEEEEeec
Confidence 56777776 4799999999999999999998763
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.53 E-value=0.9 Score=35.55 Aligned_cols=85 Identities=12% Similarity=-0.040 Sum_probs=56.3
Q ss_pred CCCEEEEeCCCCchHHHHHHHHH-HcC----CEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLA-ESG----AHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRF 138 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la-~~G----~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~ 138 (298)
+|..||..|+++|--.++.-+++ ..| .+|+.++++++-++...+.+.+.......-.++.++..|..+-.
T Consensus 80 ~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~----- 154 (223)
T d1r18a_ 80 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY----- 154 (223)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC-----
T ss_pred CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccc-----
Confidence 46789999999998877666665 445 48999999987776665554332110000026888888875311
Q ss_pred HHHHhcccCCccEEEEccCC
Q 022369 139 SEAWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 139 ~~~~~~~~g~idilVnnag~ 158 (298)
...+..|.++.+++.
T Consensus 155 -----~~~~~fD~Iiv~~a~ 169 (223)
T d1r18a_ 155 -----PPNAPYNAIHVGAAA 169 (223)
T ss_dssp -----GGGCSEEEEEECSCB
T ss_pred -----ccccceeeEEEEeec
Confidence 123679999888876
|
| >d2fr1a2 c.2.1.2 (A:1448-1656) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=85.33 E-value=5.9 Score=29.72 Aligned_cols=141 Identities=9% Similarity=-0.012 Sum_probs=76.3
Q ss_pred CCCCCEEEEeCCC--CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 62 PVNDLTCIVTGST--SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 62 ~~~~k~vlITGas--~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
...|.++++.... ...+.+++..|...|..++.+.-+.+ .+.+ .+.
T Consensus 22 ~~~g~~lv~~~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~-----------------------------~~~~---~l~ 69 (209)
T d2fr1a2 22 RLDGTWLVAKYAGTADETSTAAREALESAGARVRELVVDAR-----------------------------CGRD---ELA 69 (209)
T ss_dssp CCCSEEEEEECTTSSHHHHHHHHHHHHTTSCEEEEEECCTT-----------------------------CCHH---HHH
T ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHHhCCCeEEEecCCCc-----------------------------cCHH---HHH
Confidence 4456666665433 34777788888888887776543311 1222 222
Q ss_pred HHHhcccCCccEEEEccCCCCCCCCCccChhhHHHHHhhhchHHHHHHHHHhhhhhcCCCCeEEEEcCCccccCCCCccc
Q 022369 140 EAWNGRLGPLHVLINNAGIFSIGEPQKFSKDGYEEHMQVNHLAPALLSILLFPSLIRGSPSRIINVNSVMHYVGFVDTED 219 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~lp~m~~~~~g~Iv~isS~~~~~~~~~~~~ 219 (298)
+. ....+.++.+|+-.+....... . . +. ....+...+.++|++.. .....++.+++..+.-..
T Consensus 70 ~~-~~~~~~~~~vv~l~~~~~~~~~-~-~-~~----~~~~~~~~l~l~qal~~---~~~~~~l~~vT~~a~~~~------ 132 (209)
T d2fr1a2 70 ER-LRSVGEVAGVLSLLAVDEAEPE-E-A-PL----ALASLADTLSLVQAMVS---AELGCPLWTVTESAVATG------ 132 (209)
T ss_dssp HH-HTTSCCCSEEEECTTTTCCCCS-S-C-GG----GCHHHHHHHHHHHHHHH---TTCCCCEEEEEESCSCSS------
T ss_pred HH-hhccCCCCeEEEeCCCCCCCCc-c-h-hH----HHHHHHHHHHHHHHHHh---CCCCCcEEEEEcCCcccC------
Confidence 22 2344678888887665322211 1 1 11 11224455566666533 233456777765432221
Q ss_pred ccccccccCCCCcccchhhHHHHHHHHHHHHHHcCCCCCcEEEEe
Q 022369 220 MNVVSGRRKYTSLMGYSGSKLAQIKFSSILQKRLPAESGINVVCV 264 (298)
Q Consensus 220 ~~~~~~~~~~~~~~~Y~asKaa~~~l~~~l~~e~~~~~gI~v~~v 264 (298)
+.-..-+...+++-+|.++++.|+ . ++++.+|
T Consensus 133 ----------~~d~~~~p~~A~l~Gl~r~~~~E~-P--~l~~~~v 164 (209)
T d2fr1a2 133 ----------PFERVRNAAHGALWGVGRVIALEN-P--AVWGGLV 164 (209)
T ss_dssp ----------TTSCCSCGGGHHHHHHHHHHHHHC-G--GGEEEEE
T ss_pred ----------CCcccCCHhHHhHHHHHHHHHHhC-C--CceEEEE
Confidence 111223457889999999999999 4 3454444
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=85.23 E-value=3.1 Score=31.82 Aligned_cols=64 Identities=11% Similarity=0.104 Sum_probs=45.8
Q ss_pred CCEEEEeCCCCc-hHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCH
Q 022369 65 DLTCIVTGSTSG-IGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSL 132 (298)
Q Consensus 65 ~k~vlITGas~G-IG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~ 132 (298)
+..+|=.|++.| +...+++.+...|++|+.+|-+++-++...+.+.+. +....+.....|..+.
T Consensus 40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~----~~~~~~~~~~~d~~~~ 104 (225)
T d1im8a_ 40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY----HSEIPVEILCNDIRHV 104 (225)
T ss_dssp TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTS----CCSSCEEEECSCTTTC
T ss_pred CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhh----cccchhhhccchhhcc
Confidence 467888888765 456677766667999999999988888776665542 2234677777776543
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=85.18 E-value=1.5 Score=35.37 Aligned_cols=77 Identities=14% Similarity=0.107 Sum_probs=54.8
Q ss_pred CEEEEeCCC-CchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 66 LTCIVTGST-SGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 66 k~vlITGas-~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
..+|=.|++ |-||.++|..+ ..++|+.+|.+++.++-+.+.++...- .++.+++.|+-+.- .
T Consensus 110 ~~vlDlGtGSG~I~i~la~~~--p~~~v~avDis~~Al~~A~~Na~~~~~-----~~v~~~~~d~~~~~---------~- 172 (274)
T d2b3ta1 110 CRILDLGTGTGAIALALASER--PDCEIIAVDRMPDAVSLAQRNAQHLAI-----KNIHILQSDWFSAL---------A- 172 (274)
T ss_dssp CEEEEETCTTSHHHHHHHHHC--TTSEEEEECSSHHHHHHHHHHHHHHTC-----CSEEEECCSTTGGG---------T-
T ss_pred cceeeeehhhhHHHHHHHhhC--CcceeeeccchhHHHhHHHHHHHHhCc-----ccceeeeccccccc---------C-
Confidence 346655655 55777776654 357999999999999888777765421 26899999986542 1
Q ss_pred ccCCccEEEEccCCCC
Q 022369 145 RLGPLHVLINNAGIFS 160 (298)
Q Consensus 145 ~~g~idilVnnag~~~ 160 (298)
.+++|++|.|..+..
T Consensus 173 -~~~fDlIvsNPPYi~ 187 (274)
T d2b3ta1 173 -GQQFAMIVSNPPYID 187 (274)
T ss_dssp -TCCEEEEEECCCCBC
T ss_pred -CCceeEEEecchhhh
Confidence 147999999988754
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.13 E-value=0.35 Score=37.12 Aligned_cols=31 Identities=23% Similarity=0.176 Sum_probs=26.1
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
|+|.| +|=-|...|..|+++|.+|.++.++.
T Consensus 8 viViG-aG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLG-TGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp EEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 67777 44568899999999999999998864
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=85.07 E-value=2.4 Score=33.03 Aligned_cols=76 Identities=14% Similarity=0.027 Sum_probs=52.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHHH-cCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAE-SGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~-~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
|+.||=.|++.| .++..+++ .|++|+.++-+++.++...+...+. +.+.++.+...|+.+..
T Consensus 34 g~~VLDiGCG~G---~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~----gl~~~v~~~~~d~~~~~---------- 96 (245)
T d1nkva_ 34 GTRILDLGSGSG---EMLCTWARDHGITGTGIDMSSLFTAQAKRRAEEL----GVSERVHFIHNDAAGYV---------- 96 (245)
T ss_dssp TCEEEEETCTTC---HHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHT----TCTTTEEEEESCCTTCC----------
T ss_pred CCEEEEEcCCCC---HHHHHHHHhcCCEEEEEecccchhhHHHHHHHHh----hccccchhhhhHHhhcc----------
Confidence 688999998877 34555655 4899999999988777665554443 33357999999987531
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
.-+++|.++..-..
T Consensus 97 -~~~~fD~v~~~~~~ 110 (245)
T d1nkva_ 97 -ANEKCDVAACVGAT 110 (245)
T ss_dssp -CSSCEEEEEEESCG
T ss_pred -ccCceeEEEEEehh
Confidence 01478988765544
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.90 E-value=0.29 Score=38.06 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=29.5
Q ss_pred CEEEEeCCCCchHHH-----HHHHHHHcCCEEEEEEcCc
Q 022369 66 LTCIVTGSTSGIGRE-----IARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 66 k~vlITGas~GIG~~-----~a~~la~~G~~Vil~~r~~ 99 (298)
|++.|+++-||.|+. +|..|+++|.+|.++|-+.
T Consensus 2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~ 40 (232)
T d1hyqa_ 2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 40 (232)
T ss_dssp EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 689999999999986 6778889999999998664
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=84.85 E-value=0.61 Score=37.12 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=31.3
Q ss_pred CCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEc
Q 022369 62 PVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVR 97 (298)
Q Consensus 62 ~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r 97 (298)
+++||+++|-| .+-.|..+|+.|.+.|++|+.++.
T Consensus 28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD 62 (242)
T d1v9la1 28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD 62 (242)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence 68899999997 778999999999999999997764
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=84.79 E-value=0.36 Score=39.22 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=25.8
Q ss_pred EEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc
Q 022369 68 CIVTGSTSGIGREIARQLAESGA-HVVMAVRNL 99 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~ 99 (298)
|+|.||+ -+|.++|++|+++|. +|++++|+.
T Consensus 4 ViIIGaG-i~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 4 IVIIGAG-IVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp EEEECCS-HHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred EEEECcC-HHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 6677665 799999999999996 699998763
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=84.73 E-value=3.1 Score=33.46 Aligned_cols=73 Identities=11% Similarity=0.069 Sum_probs=50.4
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHc-CCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAES-GAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~-G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|..||=.|++-| .++..++++ |++|+.++.+++..+...+.+++. +....+.+...|..+.
T Consensus 52 ~g~~VLDiGCG~G---~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~----~l~~~~~~~~~d~~~~---------- 114 (280)
T d2fk8a1 52 PGMTLLDIGCGWG---TTMRRAVERFDVNVIGLTLSKNQHARCEQVLASI----DTNRSRQVLLQGWEDF---------- 114 (280)
T ss_dssp TTCEEEEESCTTS---HHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTS----CCSSCEEEEESCGGGC----------
T ss_pred CCCEEEEecCCch---HHHHHHHHhCceeEEEecchHHHHHHHHHHHHhh----ccccchhhhhhhhhhh----------
Confidence 3789999999966 345556654 899999999988887776665543 3335677776775432
Q ss_pred hcccCCccEEEEcc
Q 022369 143 NGRLGPLHVLINNA 156 (298)
Q Consensus 143 ~~~~g~idilVnna 156 (298)
-++.|.++..-
T Consensus 115 ---~~~fD~i~si~ 125 (280)
T d2fk8a1 115 ---AEPVDRIVSIE 125 (280)
T ss_dssp ---CCCCSEEEEES
T ss_pred ---ccchhhhhHhh
Confidence 14688776643
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.67 E-value=2.4 Score=33.32 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=30.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHH-cCCEEEEEEc
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAE-SGAHVVMAVR 97 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~-~G~~Vil~~r 97 (298)
.+++||+++|-|-+ -.|..+|+.|++ .|++|+.++.
T Consensus 28 ~~l~g~~v~IqGfG-nVG~~~a~~L~~~~G~kvv~vsD 64 (239)
T d1gtma1 28 DTLKGKTIAIQGYG-NAGYYLAKIMSEDFGMKVVAVSD 64 (239)
T ss_dssp SCSTTCEEEEECCS-HHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCcCCCEEEEECCC-HHHHHHHHHHHHhcCcceeeccc
Confidence 45889999999985 599999999986 4999987754
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=84.62 E-value=5.2 Score=28.41 Aligned_cols=85 Identities=8% Similarity=0.050 Sum_probs=54.0
Q ss_pred CCEEEEeCCC---CchHHHHHHHHHHcCCEEEEEEcCchHHH--HHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHH
Q 022369 65 DLTCIVTGST---SGIGREIARQLAESGAHVVMAVRNLKAAN--ELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFS 139 (298)
Q Consensus 65 ~k~vlITGas---~GIG~~~a~~la~~G~~Vil~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~ 139 (298)
-|.+.|.|+| +..|..+++.|.+.|++|+.+..+.+... .....+.+ .+. ...+..+ +..++.+.+++
T Consensus 19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i~G~~~~~sl~d-lp~---~iD~v~i---~vp~~~~~~~~ 91 (139)
T d2d59a1 19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLD-IPD---KIEVVDL---FVKPKLTMEYV 91 (139)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGG-CSS---CCSEEEE---CSCHHHHHHHH
T ss_pred CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccccCCCcccccccc-cCc---cceEEEE---EeCHHHHHHHH
Confidence 3789999999 57999999999999999998866532211 00111111 010 0122221 24577788888
Q ss_pred HHHhcccCCccEEEEccCC
Q 022369 140 EAWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 140 ~~~~~~~g~idilVnnag~ 158 (298)
+++.+. .+..++...|.
T Consensus 92 ~e~~~~--g~k~v~~~~G~ 108 (139)
T d2d59a1 92 EQAIKK--GAKVVWFQYNT 108 (139)
T ss_dssp HHHHHH--TCSEEEECTTC
T ss_pred HHHHHh--CCCEEEEeccc
Confidence 888776 46777777775
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=84.61 E-value=0.36 Score=33.88 Aligned_cols=33 Identities=39% Similarity=0.493 Sum_probs=27.9
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
|.++|.|| |-+|.++|..|++.|.+|.++.|++
T Consensus 33 ~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 33 GEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp SEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECC-cHHHHHHHHHhhcccceEEEEeccc
Confidence 56777655 5899999999999999999998874
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=84.59 E-value=0.25 Score=33.97 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=32.7
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
...+++||.|+|.|++ -=|..+|..|++.+.++++..|+.
T Consensus 26 ~~~~f~gK~VlVVG~g-~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 26 EPELFVGESVLVVGGA-SSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp CGGGGTTCCEEEECSS-HHHHHHHHHHTTTSCSSEEEECTT
T ss_pred chhhcCCCeEEEECCC-CCHHHHHHHHHHhcCEEEEEEecC
Confidence 3457889999999987 467789999999988888887764
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.33 E-value=0.74 Score=32.25 Aligned_cols=32 Identities=34% Similarity=0.344 Sum_probs=26.7
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRN 98 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~ 98 (298)
+.++|.|| +-||.++|..|.+.|.+|.++.|+
T Consensus 21 ~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence 34666665 579999999999999999999876
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=84.24 E-value=0.64 Score=36.49 Aligned_cols=33 Identities=24% Similarity=0.182 Sum_probs=26.4
Q ss_pred CEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 66 LTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
+.|+|.||+ --|..+|..|+++|.+|+++.|+.
T Consensus 5 ~kV~IiGaG-~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 5 DRIAVVGGS-ISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp SEEEEECCS-HHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CcEEEECcC-HHHHHHHHHHHHCCCCEEEEeCCC
Confidence 567777775 456777888999999999999864
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=84.23 E-value=2.2 Score=32.88 Aligned_cols=76 Identities=12% Similarity=0.013 Sum_probs=54.5
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNG 144 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~ 144 (298)
|..||=.|++.|. ++..|+++|.+|+.+|-+++-++...+.++...- .++.+++.|..+.. +
T Consensus 17 ~~rILDiGcGtG~---~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~-----~~~~~~~~d~~~~~----~------ 78 (234)
T d1xxla_ 17 EHRVLDIGAGAGH---TALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-----ENVRFQQGTAESLP----F------ 78 (234)
T ss_dssp TCEEEEESCTTSH---HHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-----CSEEEEECBTTBCC----S------
T ss_pred CCEEEEeCCcCcH---HHHHHHHhCCeEEEEeCChhhhhhhhhhhccccc-----cccccccccccccc----c------
Confidence 5789999999884 4557778899999999998888777666655321 26889999987532 0
Q ss_pred ccCCccEEEEccCC
Q 022369 145 RLGPLHVLINNAGI 158 (298)
Q Consensus 145 ~~g~idilVnnag~ 158 (298)
..+.+|+++.+-.+
T Consensus 79 ~~~~fD~v~~~~~l 92 (234)
T d1xxla_ 79 PDDSFDIITCRYAA 92 (234)
T ss_dssp CTTCEEEEEEESCG
T ss_pred cccccceeeeecee
Confidence 01579987765443
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=83.47 E-value=0.97 Score=29.85 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=41.8
Q ss_pred CCCchHH-HHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccCCccE
Q 022369 73 STSGIGR-EIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHV 151 (298)
Q Consensus 73 as~GIG~-~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g~idi 151 (298)
|-+|+|. ++|+.|.++|+.|...|+++.... ++|++. |..+. ..-|..+ ....|+
T Consensus 8 GIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t---~~L~~~------Gi~i~-~gh~~~~--------------i~~~d~ 63 (89)
T d1j6ua1 8 GIGGIGMSAVALHEFSNGNDVYGSNIEETERT---AYLRKL------GIPIF-VPHSADN--------------WYDPDL 63 (89)
T ss_dssp TTTSHHHHHHHHHHHHTTCEEEEECSSCCHHH---HHHHHT------TCCEE-SSCCTTS--------------CCCCSE
T ss_pred eECHHHHHHHHHHHHhCCCeEEEEeCCCChhH---HHHHHC------CCeEE-eeecccc--------------cCCCCE
Confidence 5678898 589999999999999998864322 234442 12221 1223222 136899
Q ss_pred EEEccCCCC
Q 022369 152 LINNAGIFS 160 (298)
Q Consensus 152 lVnnag~~~ 160 (298)
+|...++..
T Consensus 64 vV~SsAI~~ 72 (89)
T d1j6ua1 64 VIKTPAVRD 72 (89)
T ss_dssp EEECTTCCT
T ss_pred EEEecCcCC
Confidence 999999853
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=83.43 E-value=0.55 Score=35.72 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=28.5
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcCchHHHHH
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRNLKAANEL 105 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~~~~~~ 105 (298)
+.|.| .|-+|+.+|..|+ +|++|+.+|-++++.+.+
T Consensus 3 I~ViG-lG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l 38 (196)
T d1dlja2 3 IAVAG-SGYVGLSLGVLLS-LQNEVTIVDILPSKVDKI 38 (196)
T ss_dssp EEEEC-CSHHHHHHHHHHT-TTSEEEEECSCHHHHHHH
T ss_pred EEEEC-CChhHHHHHHHHH-CCCcEEEEECCHHHHHHH
Confidence 33444 7899999998776 699999999998776655
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.29 E-value=0.8 Score=31.68 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=25.8
Q ss_pred CEEEEeCCCCchHHHHHHHHHHc---CCEEEEEEcCc
Q 022369 66 LTCIVTGSTSGIGREIARQLAES---GAHVVMAVRNL 99 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~---G~~Vil~~r~~ 99 (298)
+.++|.|| |.+|.++|..|.+. |.+|.++.|..
T Consensus 21 ~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 21 RRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp SEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred CeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 67888887 78999999776654 56799998763
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=83.07 E-value=0.47 Score=37.91 Aligned_cols=30 Identities=27% Similarity=0.413 Sum_probs=25.1
Q ss_pred EEEeCCCCchHHHHHHHHHHcCCEEEEEEcC
Q 022369 68 CIVTGSTSGIGREIARQLAESGAHVVMAVRN 98 (298)
Q Consensus 68 vlITGas~GIG~~~a~~la~~G~~Vil~~r~ 98 (298)
|+|.|| +-.|.++|++|+++|.+|++++++
T Consensus 6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~ 35 (281)
T d2gf3a1 6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAF 35 (281)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCcEEEEeCC
Confidence 566655 457999999999999999999874
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=83.05 E-value=0.87 Score=34.46 Aligned_cols=66 Identities=15% Similarity=0.167 Sum_probs=46.1
Q ss_pred HHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHhcccCCccEEEEccCCCCC
Q 022369 82 ARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWNGRLGPLHVLINNAGIFSI 161 (298)
Q Consensus 82 a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~~~~g~idilVnnag~~~~ 161 (298)
.+.+++++.+|+.+||+++.++...+. . ..++.++..++++.++. +.... .+.+|.++..-|++..
T Consensus 33 s~~iL~~~~~viaiD~D~~ai~~a~~~----~-----~~~~~~~~~~f~~~~~~---l~~~~--~~~vdgIl~DLGvSs~ 98 (182)
T d1wg8a2 33 ARGILERGGRVIGLDQDPEAVARAKGL----H-----LPGLTVVQGNFRHLKRH---LAALG--VERVDGILADLGVSSF 98 (182)
T ss_dssp HHHHHHTTCEEEEEESCHHHHHHHHHT----C-----CTTEEEEESCGGGHHHH---HHHTT--CSCEEEEEEECSCCHH
T ss_pred HHHHhcccCcEEEEhhhhhHHHHHhhc----c-----ccceeEeehHHHHHHHH---HHHcC--CCccCEEEEEccCCHH
Confidence 455566778999999999887665321 1 13789999988875543 33322 3579999999998653
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=83.01 E-value=1.6 Score=34.26 Aligned_cols=78 Identities=8% Similarity=-0.055 Sum_probs=54.7
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHHh
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAWN 143 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~~ 143 (298)
+++||=.|++.| ..+..+++.|. +|+.+|.+++.++.+.+..... +...++.++++|.....-
T Consensus 25 ~~~VLDlGCG~G---~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~----~~~~~v~f~~~D~~~~~~--------- 88 (252)
T d1ri5a_ 25 GDSVLDLGCGKG---GDLLKYERAGIGEYYGVDIAEVSINDARVRARNM----KRRFKVFFRAQDSYGRHM--------- 88 (252)
T ss_dssp TCEEEEETCTTT---TTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTS----CCSSEEEEEESCTTTSCC---------
T ss_pred cCEEEEecccCc---HHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhc----CCCcceEEEEcchhhhcc---------
Confidence 678999999877 24566777776 8999999998888776655432 333579999999854320
Q ss_pred cccCCccEEEEccCC
Q 022369 144 GRLGPLHVLINNAGI 158 (298)
Q Consensus 144 ~~~g~idilVnnag~ 158 (298)
..-+..|+++.+-+.
T Consensus 89 ~~~~~fD~V~~~~~l 103 (252)
T d1ri5a_ 89 DLGKEFDVISSQFSF 103 (252)
T ss_dssp CCSSCEEEEEEESCG
T ss_pred cccccceEEEEccee
Confidence 112468988876554
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=82.76 E-value=0.46 Score=38.19 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=29.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCch
Q 022369 67 TCIVTGSTSGIGREIARQLAESGAHVVMAVRNLK 100 (298)
Q Consensus 67 ~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~~ 100 (298)
.|+|.||+ --|+.+|..|+++|.+|+++.++++
T Consensus 4 ~V~IvGaG-p~Gl~~A~~L~~~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 4 QVAIIGAG-PSGLLLGQLLHKAGIDNVILERQTP 36 (292)
T ss_dssp SEEEECCS-HHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred CEEEECcC-HHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 37888887 7889999999999999999999864
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=82.66 E-value=0.57 Score=34.33 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=28.7
Q ss_pred CCCEEEEeCCCCchHHHHHHHHHHcCC--EEEEEEcCc
Q 022369 64 NDLTCIVTGSTSGIGREIARQLAESGA--HVVMAVRNL 99 (298)
Q Consensus 64 ~~k~vlITGas~GIG~~~a~~la~~G~--~Vil~~r~~ 99 (298)
.||.++|.||+ -.|.++|..|.+.|. +|+++++++
T Consensus 1 ~gkrivIvGgG-~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGGG-TGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECCS-HHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECcc-HHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 37899999986 468999999999884 788887764
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=82.03 E-value=2.2 Score=31.11 Aligned_cols=44 Identities=20% Similarity=0.189 Sum_probs=32.2
Q ss_pred CEEEEeCCCCchHHHHHHHHHHc--CCEEEEE--EcCchHHHHHHHHH
Q 022369 66 LTCIVTGSTSGIGREIARQLAES--GAHVVMA--VRNLKAANELIQKW 109 (298)
Q Consensus 66 k~vlITGas~GIG~~~a~~la~~--G~~Vil~--~r~~~~~~~~~~~~ 109 (298)
|.+.|-|+||.||.....-..++ .++|+.. .+|.+.+.+...+.
T Consensus 2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~N~~~L~~q~~~f 49 (151)
T d1q0qa2 2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEF 49 (151)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESSCHHHHHHHHHHH
T ss_pred CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecCcHHHHHHHHHHH
Confidence 57899999999999988888776 4677765 45555555555443
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=81.68 E-value=0.41 Score=38.32 Aligned_cols=33 Identities=18% Similarity=0.366 Sum_probs=27.7
Q ss_pred CEEEEeCCCCchHHH-----HHHHHHHcCCEEEEEEcCc
Q 022369 66 LTCIVTGSTSGIGRE-----IARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 66 k~vlITGas~GIG~~-----~a~~la~~G~~Vil~~r~~ 99 (298)
|++.|+| -||.|+. +|..|++.|.+|.++|-++
T Consensus 2 r~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~ 39 (269)
T d1cp2a_ 2 RQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred CEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 5677887 8899986 5778999999999999875
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=81.60 E-value=1.8 Score=30.57 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=51.1
Q ss_pred CCEEEEeCCC-Cc---------hHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHH
Q 022369 65 DLTCIVTGST-SG---------IGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDS 134 (298)
Q Consensus 65 ~k~vlITGas-~G---------IG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~ 134 (298)
.|.+||.|++ -- -+.+.+++|-+.|++++++..|++....-.+. .+++. .+--..+.
T Consensus 7 ~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~d~----------aD~lY---fePlt~e~ 73 (127)
T d1a9xa3 7 IKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDPEM----------ADATY---IEPIHWEV 73 (127)
T ss_dssp CCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCGGG----------SSEEE---CSCCCHHH
T ss_pred CCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcChhh----------cceee---eecCCHHH
Confidence 4778888884 23 35667888899999999999998865433111 12333 34445677
Q ss_pred HHHHHHHHhcccCCccEEEEccCC
Q 022369 135 VVRFSEAWNGRLGPLHVLINNAGI 158 (298)
Q Consensus 135 v~~~~~~~~~~~g~idilVnnag~ 158 (298)
+.+++++ .++|.++-..|.
T Consensus 74 v~~Ii~~-----E~pd~il~~~GG 92 (127)
T d1a9xa3 74 VRKIIEK-----ERPDAVLPTMGG 92 (127)
T ss_dssp HHHHHHH-----HCCSEEECSSSH
T ss_pred HHHHHHH-----hCcCCeEEEeee
Confidence 7777765 378988876663
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=81.56 E-value=2.7 Score=33.26 Aligned_cols=77 Identities=13% Similarity=0.159 Sum_probs=55.4
Q ss_pred CCCEEEEeCCCCc-hHHHHHHHHHHcCCEEEEEEcCchHHHHHHHHHHHhhcCCCCCccEEEEEcCCCCHHHHHHHHHHH
Q 022369 64 NDLTCIVTGSTSG-IGREIARQLAESGAHVVMAVRNLKAANELIQKWQEEWSGKGLPLNIEAMELDLLSLDSVVRFSEAW 142 (298)
Q Consensus 64 ~~k~vlITGas~G-IG~~~a~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~v~~~~~~~ 142 (298)
.|.+||=.|+++| +...+|+.+... .+|+.++++++.++.+.+.+.+... ..++.+...|+.+.-
T Consensus 85 pG~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~----~~nv~~~~~Di~~~~--------- 150 (250)
T d1yb2a1 85 PGMDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYD----IGNVRTSRSDIADFI--------- 150 (250)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSC----CTTEEEECSCTTTCC---------
T ss_pred CcCEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcC----CCceEEEEeeeeccc---------
Confidence 4788999999877 456666666544 4999999999988888877765322 247899999987631
Q ss_pred hcccCCccEEEEcc
Q 022369 143 NGRLGPLHVLINNA 156 (298)
Q Consensus 143 ~~~~g~idilVnna 156 (298)
. -+.+|.++.+.
T Consensus 151 ~--~~~fD~V~ld~ 162 (250)
T d1yb2a1 151 S--DQMYDAVIADI 162 (250)
T ss_dssp C--SCCEEEEEECC
T ss_pred c--cceeeeeeecC
Confidence 1 13689888753
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=81.14 E-value=0.89 Score=37.41 Aligned_cols=34 Identities=29% Similarity=0.335 Sum_probs=27.9
Q ss_pred CCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcCc
Q 022369 65 DLTCIVTGSTSGIGREIARQLAESGAHVVMAVRNL 99 (298)
Q Consensus 65 ~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~~ 99 (298)
.|.++|.||+ --|..+|..|+++|.+|.++.++.
T Consensus 2 ~KKI~IIGaG-~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 2 SKKILIVGAG-FSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CCEEEEECCS-HHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEEECCc-HHHHHHHHHHHhCCCCEEEEECCC
Confidence 5788888876 356778899999999999998764
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=80.96 E-value=0.88 Score=34.96 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=32.0
Q ss_pred CCCCCCEEEEeCCCCchHHHHHHHHHHcCCEEEEEEcC
Q 022369 61 PPVNDLTCIVTGSTSGIGREIARQLAESGAHVVMAVRN 98 (298)
Q Consensus 61 ~~~~~k~vlITGas~GIG~~~a~~la~~G~~Vil~~r~ 98 (298)
.+++||.|+|.|++. -|..+|.++++.+++++.+.|+
T Consensus 28 ~~~~gK~V~VvG~G~-Sa~dia~~~~~~~~~~~~~~~~ 64 (235)
T d1w4xa2 28 VDFSGQRVGVIGTGS-SGIQVSPQIAKQAAELFVFQRT 64 (235)
T ss_dssp CCCBTCEEEEECCSH-HHHHHHHHHHHHBSEEEEEESS
T ss_pred CCCCCCEEEEECCCc-cHHHHHHHHHhhhccccccccc
Confidence 468999999998875 3799999999999999988776
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.68 E-value=1.3 Score=32.27 Aligned_cols=39 Identities=28% Similarity=0.443 Sum_probs=27.2
Q ss_pred CCCCCCCCEEEEeCCCCchHHHHHHHHHHcCC-EEEEEEcCc
Q 022369 59 PLPPVNDLTCIVTGSTSGIGREIARQLAESGA-HVVMAVRNL 99 (298)
Q Consensus 59 ~~~~~~~k~vlITGas~GIG~~~a~~la~~G~-~Vil~~r~~ 99 (298)
+.+...+| |+|.| ++-.|...|..+.+.|+ .|+++.|+.
T Consensus 40 ~~p~~~~k-VvVIG-GGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 40 PLPSIRGA-VIVLG-AGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CCCCCCSE-EEEEC-SSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred ccccCCCE-EEEEC-CChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 44455555 55554 44688899999999998 577777753
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