Query 022370
Match_columns 298
No_of_seqs 40 out of 42
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 03:00:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04855 SNF5: SNF5 / SMARCB1 67.0 25 0.00055 32.8 7.5 61 233-293 117-182 (244)
2 PF10925 DUF2680: Protein of u 62.3 18 0.00038 27.4 4.5 33 257-289 22-54 (59)
3 PF11736 DUF3299: Protein of u 57.3 11 0.00023 32.9 3.0 54 88-147 43-97 (146)
4 PF10083 DUF2321: Uncharacteri 44.4 28 0.00061 31.4 3.6 59 227-286 52-116 (158)
5 KOG1271 Methyltransferases [Ge 38.0 17 0.00036 34.4 1.3 37 83-119 178-218 (227)
6 PF13964 Kelch_6: Kelch motif 35.8 22 0.00048 24.1 1.3 15 104-118 9-23 (50)
7 PF13854 Kelch_5: Kelch motif 32.8 28 0.00061 23.4 1.4 13 104-116 12-24 (42)
8 PF07646 Kelch_2: Kelch motif; 31.7 30 0.00064 23.6 1.4 12 104-115 9-20 (49)
9 PF08672 APC2: Anaphase promot 31.4 24 0.00051 26.6 0.9 25 246-270 29-53 (60)
10 COG4817 DNA-binding ferritin-l 30.6 35 0.00075 29.4 1.9 13 253-265 77-89 (111)
11 COG3937 Uncharacterized conser 29.5 1.2E+02 0.0026 26.1 4.8 34 254-287 25-58 (108)
12 PF13415 Kelch_3: Galactose ox 28.0 36 0.00078 23.2 1.3 12 106-117 1-12 (49)
13 PF01344 Kelch_1: Kelch motif; 27.8 33 0.0007 22.6 1.0 15 103-117 8-22 (47)
14 PF09070 PFU: PFU (PLAA family 27.5 65 0.0014 27.4 3.0 34 253-286 79-112 (116)
15 PF06476 DUF1090: Protein of u 25.7 91 0.002 26.3 3.5 34 262-296 58-91 (115)
16 PRK13556 azoreductase; Provisi 24.3 43 0.00092 29.3 1.4 33 81-115 112-144 (208)
17 PF06386 GvpL_GvpF: Gas vesicl 23.4 1.2E+02 0.0025 27.5 4.0 37 109-145 5-49 (249)
18 COG2411 Uncharacterized conser 22.9 3.2E+02 0.007 25.5 6.7 51 239-290 109-161 (188)
19 KOG3147 6-phosphogluconolacton 22.8 59 0.0013 31.3 2.1 37 106-150 154-190 (252)
20 KOG2061 Uncharacterized MYND Z 22.1 50 0.0011 33.3 1.5 23 99-121 69-91 (362)
21 TIGR02698 CopY_TcrY copper tra 21.6 1.2E+02 0.0026 25.4 3.5 59 216-283 59-117 (130)
22 KOG1649 SWI-SNF chromatin remo 21.4 2.8E+02 0.006 28.5 6.5 49 243-291 266-318 (397)
No 1
>PF04855 SNF5: SNF5 / SMARCB1 / INI1; InterPro: IPR006939 SNF5 is a component of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling complex that regulates the transcription of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class complexes characterised so far []. This family consists of the conserved region of SNF5, including a direct repeat motif. SNF5 is essential for the assembly promoter targeting and chromatin remodelling activity of the SWI-SNF complex []. SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily b, member 1, and also INI1 for integrase interactor 1. Loss-of function mutations in SNF5 are thought to contribute to oncogenesis in malignant rhabdoid tumours (MRTs) [].; GO: 0006338 chromatin remodeling, 0000228 nuclear chromosome
Probab=67.05 E-value=25 Score=32.85 Aligned_cols=61 Identities=20% Similarity=0.391 Sum_probs=49.2
Q ss_pred EEEEEeecCC-Ccccccccccc----chhHHHHhhhhhcccChHHHHHHHHHHHHHHHHHHHHhhh
Q 022370 233 VVQIMFPVEP-PVVCEFDWEFD----EVDEFTDKLVEEEALAEDQKDAFKDFVKEKVREAKKANRE 293 (298)
Q Consensus 233 vV~I~fplep-pvvcefdwE~D----D~eeF~DklI~eE~Lp~Dqk~kfkeFvKE~Vre~Kk~~~q 293 (298)
.|++...+.- -.+-+|.|++. .+|+||..+|.|=+|+.+=.-++--=|-|+|-..||++-.
T Consensus 117 ~I~LdI~ig~~~l~DqFEWDL~~~~~~PE~FA~~~c~dLgL~~Ef~~aIahsIrEq~~~~kK~~~~ 182 (244)
T PF04855_consen 117 IIKLDITIGNHLLVDQFEWDLSNPPNSPEEFARVLCADLGLPGEFVPAIAHSIREQLLKYKKELCE 182 (244)
T ss_pred EEEEEEEECCEEEEEEEEecCCCCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555554 55678999984 5999999999999999988999999999999999887543
No 2
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=62.34 E-value=18 Score=27.40 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=29.4
Q ss_pred HHHHhhhhhcccChHHHHHHHHHHHHHHHHHHH
Q 022370 257 EFTDKLVEEEALAEDQKDAFKDFVKEKVREAKK 289 (298)
Q Consensus 257 eF~DklI~eE~Lp~Dqk~kfkeFvKE~Vre~Kk 289 (298)
.++|+.|+...|+.+|-+++++++.++...+..
T Consensus 22 ~~idk~Ve~G~iTqeqAd~ik~~id~~~~~~~q 54 (59)
T PF10925_consen 22 QIIDKYVEAGVITQEQADAIKKHIDQRQEYMQQ 54 (59)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999998876643
No 3
>PF11736 DUF3299: Protein of unknown function (DUF3299); InterPro: IPR021727 This is a family of bacterial proteins of unknown function.
Probab=57.27 E-value=11 Score=32.94 Aligned_cols=54 Identities=24% Similarity=0.429 Sum_probs=36.6
Q ss_pred cCCccccHHHHhhCccccCcEEEEeecCcceeecccCCceeeeecEE-EEEecCCCCCccc
Q 022370 88 KWNFSNLEDAFEEGGVLYGKKVYLFGCTEPQLVPYENKNKIVCIPVV-VAVVSPFPPSDKI 147 (298)
Q Consensus 88 ~W~F~nLe~aleEGg~L~gk~vYlFg~tEPqlv~~~ge~k~v~IP~V-Vavdsp~PPsdKI 147 (298)
.|.+....++ |.||+|-|=|=-=|.=..-.+-.+++.+|+. .|+-+|-|||++|
T Consensus 43 ~~~~~~~v~~------L~Gk~V~i~Gf~vPle~~~~~v~eFlLvP~~gaC~h~PpPppNqi 97 (146)
T PF11736_consen 43 QWASAPVVKA------LDGKQVRIPGFMVPLEQEEGKVTEFLLVPYFGACIHVPPPPPNQI 97 (146)
T ss_pred hhcccchhHH------hCCCEEEEeeEEEeeccCCCcEEEEEEeccCCcCcCCCCCCCccE
Confidence 4555555444 4499999988766654222233468999995 5688899999986
No 4
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.40 E-value=28 Score=31.42 Aligned_cols=59 Identities=22% Similarity=0.540 Sum_probs=47.4
Q ss_pred ccccccEEEEEeecCCCcccc-----ccccccchhHHHHhhhh-hcccChHHHHHHHHHHHHHHHH
Q 022370 227 EFEQSTVVQIMFPVEPPVVCE-----FDWEFDEVDEFTDKLVE-EEALAEDQKDAFKDFVKEKVRE 286 (298)
Q Consensus 227 e~e~~TvV~I~fpleppvvce-----fdwE~DD~eeF~DklI~-eE~Lp~Dqk~kfkeFvKE~Vre 286 (298)
+..-++|+.+-++.++|-.|. |-|-..-++ -+.+|++ .++|++|+|+.|++=+.+-+++
T Consensus 52 ~y~v~gv~~~g~~~~~PsYC~~CGkpyPWt~~~L~-aa~el~ee~eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 52 DYHVEGVFGLGGHYEAPSYCHNCGKPYPWTENALE-AANELIEEDEELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred ceecCCeeeeCCCCCCChhHHhCCCCCchHHHHHH-HHHHHHHHhhcCCHHHHHHHHhhhHHHhhc
Confidence 344667888889999999995 889876664 4566777 8999999999999888877654
No 5
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=37.98 E-value=17 Score=34.36 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=29.4
Q ss_pred hhhhccCCccccHHHHhhCcccc----CcEEEEeecCccee
Q 022370 83 SVYQFKWNFSNLEDAFEEGGVLY----GKKVYLFGCTEPQL 119 (298)
Q Consensus 83 ~~~~~~W~F~nLe~aleEGg~L~----gk~vYlFg~tEPql 119 (298)
-|.-.||++.+|.+.|+++|.-+ --++|+|||.+=-.
T Consensus 178 vItSCN~T~dELv~~f~~~~f~~~~tvp~ptF~FgG~~G~t 218 (227)
T KOG1271|consen 178 VITSCNFTKDELVEEFENFNFEYLSTVPTPTFMFGGSVGST 218 (227)
T ss_pred EEEecCccHHHHHHHHhcCCeEEEEeeccceEEeccccccE
Confidence 34568999999999999998655 56689999876543
No 6
>PF13964 Kelch_6: Kelch motif
Probab=35.84 E-value=22 Score=24.06 Aligned_cols=15 Identities=33% Similarity=0.751 Sum_probs=12.5
Q ss_pred ccCcEEEEeecCcce
Q 022370 104 LYGKKVYLFGCTEPQ 118 (298)
Q Consensus 104 L~gk~vYlFg~tEPq 118 (298)
..|.++|+|||....
T Consensus 9 ~~~~~iyv~GG~~~~ 23 (50)
T PF13964_consen 9 VVGGKIYVFGGYDNS 23 (50)
T ss_pred EECCEEEEECCCCCC
Confidence 458899999998774
No 7
>PF13854 Kelch_5: Kelch motif
Probab=32.81 E-value=28 Score=23.38 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=11.4
Q ss_pred ccCcEEEEeecCc
Q 022370 104 LYGKKVYLFGCTE 116 (298)
Q Consensus 104 L~gk~vYlFg~tE 116 (298)
.+|..+|||||..
T Consensus 12 ~~~~~iyi~GG~~ 24 (42)
T PF13854_consen 12 VVGNNIYIFGGYS 24 (42)
T ss_pred EECCEEEEEcCcc
Confidence 5689999999987
No 8
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=31.68 E-value=30 Score=23.58 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=10.6
Q ss_pred ccCcEEEEeecC
Q 022370 104 LYGKKVYLFGCT 115 (298)
Q Consensus 104 L~gk~vYlFg~t 115 (298)
..|.++||||+.
T Consensus 9 ~~~~kiyv~GG~ 20 (49)
T PF07646_consen 9 VLDGKIYVFGGY 20 (49)
T ss_pred EECCEEEEECCc
Confidence 458999999999
No 9
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=31.39 E-value=24 Score=26.64 Aligned_cols=25 Identities=40% Similarity=0.634 Sum_probs=18.3
Q ss_pred ccccccccchhHHHHhhhhhcccCh
Q 022370 246 CEFDWEFDEVDEFTDKLVEEEALAE 270 (298)
Q Consensus 246 cefdwE~DD~eeF~DklI~eE~Lp~ 270 (298)
-.++|..++++.|-+++|+|+.|--
T Consensus 29 ~~~~~s~~eL~~fL~~lv~e~~L~~ 53 (60)
T PF08672_consen 29 GGYDISLEELQEFLDRLVEEGKLEC 53 (60)
T ss_dssp --TT--HHHHHHHHHHHHHTTSEE-
T ss_pred CCCCCCHHHHHHHHHHHHHCCcEEe
Confidence 4688899999999999999998753
No 10
>COG4817 DNA-binding ferritin-like protein (Dps family) [General function prediction only]
Probab=30.58 E-value=35 Score=29.37 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=7.9
Q ss_pred cchhHHHHhhhhh
Q 022370 253 DEVDEFTDKLVEE 265 (298)
Q Consensus 253 DD~eeF~DklI~e 265 (298)
||+..|+|.|+.|
T Consensus 77 dDvA~F~D~Ll~D 89 (111)
T COG4817 77 DDVATFCDALLGD 89 (111)
T ss_pred chHHHHHHHHHcc
Confidence 5566666666655
No 11
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=29.45 E-value=1.2e+02 Score=26.08 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=25.3
Q ss_pred chhHHHHhhhhhcccChHHHHHHHHHHHHHHHHH
Q 022370 254 EVDEFTDKLVEEEALAEDQKDAFKDFVKEKVREA 287 (298)
Q Consensus 254 D~eeF~DklI~eE~Lp~Dqk~kfkeFvKE~Vre~ 287 (298)
-.++.+|.||+...|.+||-.+|-+=|..+.+++
T Consensus 25 k~~klvDelVkkGeln~eEak~~vddl~~q~k~~ 58 (108)
T COG3937 25 KVQKLVDELVKKGELNAEEAKRFVDDLLRQAKEA 58 (108)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999766655555444433
No 12
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=27.95 E-value=36 Score=23.17 Aligned_cols=12 Identities=42% Similarity=0.935 Sum_probs=10.0
Q ss_pred CcEEEEeecCcc
Q 022370 106 GKKVYLFGCTEP 117 (298)
Q Consensus 106 gk~vYlFg~tEP 117 (298)
|..+|||||...
T Consensus 1 g~~~~vfGG~~~ 12 (49)
T PF13415_consen 1 GNKLYVFGGYDD 12 (49)
T ss_pred CCEEEEECCcCC
Confidence 568999999874
No 13
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=27.84 E-value=33 Score=22.56 Aligned_cols=15 Identities=33% Similarity=0.716 Sum_probs=11.9
Q ss_pred cccCcEEEEeecCcc
Q 022370 103 VLYGKKVYLFGCTEP 117 (298)
Q Consensus 103 ~L~gk~vYlFg~tEP 117 (298)
..+|-.||+|||.--
T Consensus 8 ~~~~~~iyv~GG~~~ 22 (47)
T PF01344_consen 8 VVVGNKIYVIGGYDG 22 (47)
T ss_dssp EEETTEEEEEEEBES
T ss_pred EEECCEEEEEeeecc
Confidence 455889999999755
No 14
>PF09070 PFU: PFU (PLAA family ubiquitin binding); InterPro: IPR015155 The PFU (for PLAA family ubiquitin binding domain) is an ubiquitin binding domain with no homology to several known ubiquitin binding domains (e.g., UIM, NZF, UBA, UEV, UBP, or CUE domains). The PFU domain appears to be unique to the PLAA family of proteins. A single member of this family of proteins exists in every eukaryotic species examined. Each of these homologues possesses identical domain structure: an N-terminal domain containing seven WD40 repeats, a central PFU domain, and a C-terminal PUL domain, which directly binds to Cdc48, a member of the AAA-ATPase family of molecular chaperone []. In addition to ubiquitin, the PFU domain of DOA1 has been shown to bind to the SH3 domain []. Secondary structure predictions of the PFU domain suggest the presence of an extensive length of beta-sheet, N-terminal to an alpha-helical region []. Some proteins known to contain a PFU domain include: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in the ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein Lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 2K8B_B 2K8A_A 2K8C_B 2K89_A 3L3F_X 3PST_A 3PSP_A.
Probab=27.50 E-value=65 Score=27.44 Aligned_cols=34 Identities=21% Similarity=0.385 Sum_probs=28.8
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHHHHHHHHHH
Q 022370 253 DEVDEFTDKLVEEEALAEDQKDAFKDFVKEKVRE 286 (298)
Q Consensus 253 DD~eeF~DklI~eE~Lp~Dqk~kfkeFvKE~Vre 286 (298)
|++-+.|++-|.++.||..-.+.+-+||+.+...
T Consensus 79 dnP~~aAq~Fi~~n~Lp~~yl~qI~~FI~~N~~~ 112 (116)
T PF09070_consen 79 DNPYEAAQKFIERNNLPQSYLDQIANFIIQNTKG 112 (116)
T ss_dssp S-HHHHHHHHHHHHT--CCHHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC
Confidence 8999999999999999999999999999988753
No 15
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=25.70 E-value=91 Score=26.27 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=31.0
Q ss_pred hhhhcccChHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 022370 262 LVEEEALAEDQKDAFKDFVKEKVREAKKANREVFY 296 (298)
Q Consensus 262 lI~eE~Lp~Dqk~kfkeFvKE~Vre~Kk~~~qA~~ 296 (298)
=|.++.|-.|...++.+ .+.+|.++..++++|+.
T Consensus 58 ~Ctd~~l~~e~q~ki~~-~~~kV~ere~eL~eA~~ 91 (115)
T PF06476_consen 58 HCTDEGLKAERQQKIAE-KQQKVAEREAELKEAQA 91 (115)
T ss_pred hcCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 37899999999999999 99999999999999874
No 16
>PRK13556 azoreductase; Provisional
Probab=24.27 E-value=43 Score=29.28 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=23.1
Q ss_pred hhhhhhccCCccccHHHHhhCccccCcEEEEeecC
Q 022370 81 LDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCT 115 (298)
Q Consensus 81 ~d~~~~~~W~F~nLe~aleEGg~L~gk~vYlFg~t 115 (298)
+|.+...+|.|..-+.. ..|.|.||+++|++++
T Consensus 112 iD~v~~~g~tf~~~~~g--~~gll~~K~~~vi~ts 144 (208)
T PRK13556 112 IDYLNRAGKTFKYTPEG--PVGLIGDKKVALLNAR 144 (208)
T ss_pred HHHHhcCCceeecCCCC--CccccCCCEEEEEEeC
Confidence 68888889988652111 1267889999988764
No 17
>PF06386 GvpL_GvpF: Gas vesicle synthesis protein GvpL/GvpF; InterPro: IPR009430 Gas vesicles provide cells with buoyancy, enabling them to remain at the water surface. These organelles are generally synthesized by halophilic archaea and cyanobacteria, as well as some other prokaryotes. A cluster of 12-14 gvp genes (gvpMLKJIHGFEDACNO)is responsible for gas vesicle synthesis in Halobacterium sp. []. GvpF and GvpL are essential for gas vesicle formation and display sequence similarity to one another, both containing predicted coiled-coil domains that are often involved in self-oligomerisation; and are structural components of the vesicle [].; GO: 0031412 gas vesicle organization, 0031411 gas vesicle
Probab=23.41 E-value=1.2e+02 Score=27.54 Aligned_cols=37 Identities=30% Similarity=0.648 Sum_probs=24.5
Q ss_pred EEEeecCc------ceeecccCCceeeeecE--EEEEecCCCCCc
Q 022370 109 VYLFGCTE------PQLVPYENKNKIVCIPV--VVAVVSPFPPSD 145 (298)
Q Consensus 109 vYlFg~tE------Pqlv~~~ge~k~v~IP~--VVavdsp~PPsd 145 (298)
+|++|.+. ..+.+..|...+..|++ |.||+|+.|+.+
T Consensus 5 ~YvY~i~~~~~~~~~~~~Gi~~~~~v~~v~~~~laAvVs~~~~~~ 49 (249)
T PF06386_consen 5 LYVYGIVPADADDPFGLIGIDGAPPVYLVPYGDLAAVVSPVPPEE 49 (249)
T ss_pred EEEEEEeeCCcccccCCcccCCCCcEEEEEECCEEEEEecCCccc
Confidence 67777762 13344666654555554 899999999887
No 18
>COG2411 Uncharacterized conserved protein [Function unknown]
Probab=22.88 E-value=3.2e+02 Score=25.53 Aligned_cols=51 Identities=25% Similarity=0.376 Sum_probs=39.7
Q ss_pred ecCCCccccccccccchhHHHHhhhhhcc-cChHHHHHHHHHHHHH-HHHHHHH
Q 022370 239 PVEPPVVCEFDWEFDEVDEFTDKLVEEEA-LAEDQKDAFKDFVKEK-VREAKKA 290 (298)
Q Consensus 239 pleppvvcefdwE~DD~eeF~DklI~eE~-Lp~Dqk~kfkeFvKE~-Vre~Kk~ 290 (298)
++++|| .+...+--|+.|.|.--.+.-. |+++++.-++.||.+. .|++-+.
T Consensus 109 ~~d~~i-~~~~y~g~dp~eIA~laLe~l~~Ls~~~~~iL~~~~~~gslRkaA~k 161 (188)
T COG2411 109 KLDKPI-LDLPYEGRDPIEIARLALEHLDNLSERDKRILELFVEEGSLRKAAKK 161 (188)
T ss_pred hccchh-hhccCCCCCHHHHHHHHHHhcccCCHHHHHHHHHHHHcCcHHHHHHH
Confidence 567788 6666677888888876666554 9999999999999998 6766543
No 19
>KOG3147 consensus 6-phosphogluconolactonase - like protein [Carbohydrate transport and metabolism]
Probab=22.80 E-value=59 Score=31.31 Aligned_cols=37 Identities=35% Similarity=0.439 Sum_probs=26.1
Q ss_pred CcEEEEeecCcceeecccCCceeeeecEEEEEecCCCCCcccccc
Q 022370 106 GKKVYLFGCTEPQLVPYENKNKIVCIPVVVAVVSPFPPSDKIGIK 150 (298)
Q Consensus 106 gk~vYlFg~tEPqlv~~~ge~k~v~IP~VVavdsp~PPsdKIGi~ 150 (298)
||++=||=+ .+++. -++++ ++++-|||-|||++|-+.
T Consensus 154 GHtaSLFP~-~~~l~-e~~~w------V~~itdSPkpPp~RITlT 190 (252)
T KOG3147|consen 154 GHTASLFPG-HPLLN-EKLKW------VVPITDSPKPPPKRITLT 190 (252)
T ss_pred CCeeecCCC-chhhh-cccCE------EEEeCCCCCCCCccEEEe
Confidence 999999988 45443 22222 355579999999999653
No 20
>KOG2061 consensus Uncharacterized MYND Zn-finger protein [General function prediction only]
Probab=22.07 E-value=50 Score=33.25 Aligned_cols=23 Identities=22% Similarity=0.623 Sum_probs=17.6
Q ss_pred hhCccccCcEEEEeecCcceeec
Q 022370 99 EEGGVLYGKKVYLFGCTEPQLVP 121 (298)
Q Consensus 99 eEGg~L~gk~vYlFg~tEPqlv~ 121 (298)
.++.-.+-+.+|||||+.|.-..
T Consensus 69 ~~~~~~fhR~LyvF~C~~p~C~~ 91 (362)
T KOG2061|consen 69 PDIPSAFHRSLYVFGCRNPSCST 91 (362)
T ss_pred CCCCCccceEEEEEEcCCCcccc
Confidence 34444568899999999998653
No 21
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=21.64 E-value=1.2e+02 Score=25.35 Aligned_cols=59 Identities=17% Similarity=0.336 Sum_probs=39.8
Q ss_pred cccccCCCCCcccccccEEEEEeecCCCccccccccccchhHHHHhhhhhcccChHHHHHHHHHHHHH
Q 022370 216 LPYFYQPFKEDEFEQSTVVQIMFPVEPPVVCEFDWEFDEVDEFTDKLVEEEALAEDQKDAFKDFVKEK 283 (298)
Q Consensus 216 LPY~y~P~~e~e~e~~TvV~I~fpleppvvcefdwE~DD~eeF~DklI~eE~Lp~Dqk~kfkeFvKE~ 283 (298)
-.|+|.|....+.-....+.-+.-- -|+ .++..|.-.+++++.|++++-+++++.|.++
T Consensus 59 r~~~Y~p~vs~ee~~~~~~~~~~~~------~f~---gs~~~ll~~l~~~~~ls~eele~L~~li~~~ 117 (130)
T TIGR02698 59 RKFIYTALVSEDEAVENAAQELFSR------ICS---RKVGAVIADLIEESPLSQTDIEKLEKLLSEK 117 (130)
T ss_pred CcEEEEecCCHHHHHHHHHHHHHHH------HHC---CCHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence 3567889777765332222211100 011 5678899999999999999999999988775
No 22
>KOG1649 consensus SWI-SNF chromatin remodeling complex, Snf5 subunit [Chromatin structure and dynamics; Transcription]
Probab=21.40 E-value=2.8e+02 Score=28.54 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=41.0
Q ss_pred Ccccccccccc----chhHHHHhhhhhcccChHHHHHHHHHHHHHHHHHHHHh
Q 022370 243 PVVCEFDWEFD----EVDEFTDKLVEEEALAEDQKDAFKDFVKEKVREAKKAN 291 (298)
Q Consensus 243 pvvcefdwE~D----D~eeF~DklI~eE~Lp~Dqk~kfkeFvKE~Vre~Kk~~ 291 (298)
-.+-+|.|++. .+|||+..+|.|=+|+-+-.-++--=|.|++-..+|..
T Consensus 266 ~l~DQFeWdls~~~~~PEEFA~~lC~dLGL~gEf~taIA~SIreql~~~~k~~ 318 (397)
T KOG1649|consen 266 SLVDQFEWDLSNPENSPEEFATSLCQDLGLGGEFVTAIAYSIREQLLWIKKTY 318 (397)
T ss_pred eehhhheeccCCCCCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHH
Confidence 67889999994 56999999999999998777777777888887777754
Done!