Query 022370
Match_columns 298
No_of_seqs 40 out of 42
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 04:23:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sri_B Rhoptry NECK protein 2; 71.4 0.93 3.2E-05 29.6 0.3 21 132-152 7-27 (29)
2 4hsp_A Hypothetical protein; P 57.0 4.6 0.00016 34.5 1.9 45 104-148 52-98 (150)
3 3zwz_B RON2, rhoptry NECK prot 39.6 7.1 0.00024 27.0 0.3 21 132-152 13-33 (39)
4 3f2v_A General stress protein 36.7 16 0.00056 30.8 2.2 29 81-115 81-109 (192)
5 3lfp_A CSP231I C protein; tran 29.3 54 0.0018 23.6 3.7 33 249-282 62-94 (98)
6 2k89_A PLA2P, PLAP, phospholip 24.4 70 0.0024 24.7 3.6 33 253-285 39-71 (80)
7 3ha2_A NADPH-quinone reductase 22.1 23 0.0008 29.5 0.6 28 81-115 74-101 (177)
8 1sd4_A Penicillinase repressor 16.5 1.4E+02 0.0049 21.9 3.8 28 255-282 95-122 (126)
9 1b0n_A Protein (SINR protein); 14.8 1.1E+02 0.0037 22.0 2.7 22 266-287 88-109 (111)
10 3u0k_A Rcamp; fluorescent prot 14.7 82 0.0028 30.9 2.6 70 63-173 224-293 (440)
No 1
>3sri_B Rhoptry NECK protein 2; AMA1, RON2, malaria, cell invasion; 1.60A {Plasmodium falciparum}
Probab=71.40 E-value=0.93 Score=29.63 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=16.8
Q ss_pred cEEEEEecCCCCCccccccce
Q 022370 132 PVVVAVVSPFPPSDKIGIKSV 152 (298)
Q Consensus 132 P~VVavdsp~PPsdKIGi~SV 152 (298)
|+--++.|-.|||.+|||+|+
T Consensus 7 P~tSCyTs~~~PPkqiCi~q~ 27 (29)
T 3sri_B 7 PVASCFTTRMSPPQQICLNSV 27 (29)
T ss_dssp CCCSEEEESSSSCCEEEEC--
T ss_pred cchheeecccCchHHHHHHHh
Confidence 556688999999999999986
No 2
>4hsp_A Hypothetical protein; PF11736 family protein, DUF3299, structural genomics, joint for structural genomics, JCSG; HET: MSE; 2.45A {Pseudomonas aeruginosa}
Probab=57.01 E-value=4.6 Score=34.52 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=32.9
Q ss_pred ccCcEEEEeecCcceeecccC-CceeeeecEE-EEEecCCCCCcccc
Q 022370 104 LYGKKVYLFGCTEPQLVPYEN-KNKIVCIPVV-VAVVSPFPPSDKIG 148 (298)
Q Consensus 104 L~gk~vYlFg~tEPqlv~~~g-e~k~v~IP~V-Vavdsp~PPsdKIG 148 (298)
|.||+|-|=|=.=|-=..-+| -.+++.+||. .|+-.|-|||++|=
T Consensus 52 LdGk~VripGfvvPLe~~~~~~vteFlLVPy~GACiH~PPPPpNQiI 98 (150)
T 4hsp_A 52 LDGIEAKLPGYIVPLEISEAGLVTEFLLVPYYGACIHVPPPPSNQIV 98 (150)
T ss_dssp GTTEEEEEEEEEEEEEECTTSEEEEEEEESSTTBTTTBCCCCGGGCE
T ss_pred hCCCEEEeccEEEEeccCCCCcEEEEEEeCCCCcCcCCCCCCCceEE
Confidence 559999998877665543333 2558999987 45677889999974
No 3
>3zwz_B RON2, rhoptry NECK protein 2; immune system, malaria, moving junction; 2.10A {Plasmodium falciparum}
Probab=39.64 E-value=7.1 Score=27.00 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.1
Q ss_pred cEEEEEecCCCCCccccccce
Q 022370 132 PVVVAVVSPFPPSDKIGIKSV 152 (298)
Q Consensus 132 P~VVavdsp~PPsdKIGi~SV 152 (298)
|+--++.|-+|||-+|||.++
T Consensus 13 Pv~SC~ts~i~PPk~~Ci~q~ 33 (39)
T 3zwz_B 13 PVASCFTTRMSPPQQICLNSV 33 (39)
T ss_dssp CCCSEEEESSSSCCEEEESSC
T ss_pred chhhhhhccCCcHHHHHHHHH
Confidence 556678999999999999876
No 4
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=36.67 E-value=16 Score=30.83 Aligned_cols=29 Identities=31% Similarity=0.643 Sum_probs=20.7
Q ss_pred hhhhhhccCCccccHHHHhhCccccCcEEEEeecC
Q 022370 81 LDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCT 115 (298)
Q Consensus 81 ~d~~~~~~W~F~nLe~aleEGg~L~gk~vYlFg~t 115 (298)
+|+++..+|.|.. .||.|.||+++++.++
T Consensus 81 iDrv~~~g~~y~~------~g~~l~gK~~~~~~t~ 109 (192)
T 3f2v_A 81 LDEVLTYGWAYGS------KGKALKGRKIALAVSL 109 (192)
T ss_dssp HHHHSCBTTTBSS------SCCSSTTCEEEEEEEE
T ss_pred HHHHhhcCccccC------CCCCCCCCEEEEEEeC
Confidence 5777777776652 3678889998887654
No 5
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=29.25 E-value=54 Score=23.63 Aligned_cols=33 Identities=12% Similarity=0.348 Sum_probs=21.5
Q ss_pred cccccchhHHHHhhhhhcccChHHHHHHHHHHHH
Q 022370 249 DWEFDEVDEFTDKLVEEEALAEDQKDAFKDFVKE 282 (298)
Q Consensus 249 dwE~DD~eeF~DklI~eE~Lp~Dqk~kfkeFvKE 282 (298)
+|-+.+-++..+-+..=..|++++++++ +||+.
T Consensus 62 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~-~~l~~ 94 (98)
T 3lfp_A 62 SYLYTPEDDLAQIILTWNELNEQERKRI-NFYIR 94 (98)
T ss_dssp GGGGCCCHHHHHHHHHHTTCCHHHHHHH-HHHHT
T ss_pred HHHhCCChhHHHHHHHHHhCCHHHHHHH-HHHHH
Confidence 3333333334444445578999999999 99976
No 6
>2k89_A PLA2P, PLAP, phospholipase A-2-activating protein; ubiquitin binding, WD repeat, protein binding; NMR {Homo sapiens} PDB: 2k8a_A 2k8b_B 2k8c_B
Probab=24.38 E-value=70 Score=24.75 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=31.1
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHHHHHHHHH
Q 022370 253 DEVDEFTDKLVEEEALAEDQKDAFKDFVKEKVR 285 (298)
Q Consensus 253 DD~eeF~DklI~eE~Lp~Dqk~kfkeFvKE~Vr 285 (298)
|++-+.|++-|.++.||..-.+.+-+||..+..
T Consensus 39 dnP~~aAqkFi~~n~Lp~~yldqI~~FI~~N~~ 71 (80)
T 2k89_A 39 DDPWLTAYNFLQKNDLNPMFLDQVAKFIIDNTK 71 (80)
T ss_dssp SCHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 889999999999999999999999999998864
No 7
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=22.14 E-value=23 Score=29.52 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=17.2
Q ss_pred hhhhhhccCCccccHHHHhhCccccCcEEEEeecC
Q 022370 81 LDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCT 115 (298)
Q Consensus 81 ~d~~~~~~W~F~nLe~aleEGg~L~gk~vYlFg~t 115 (298)
+|+++..+|.|. .||.|.||+++++.++
T Consensus 74 iDrv~~~g~~~~-------~~~~l~gK~~~~~~t~ 101 (177)
T 3ha2_A 74 MDTVMTTKFATG-------HQYALEGKELGIVVST 101 (177)
T ss_dssp HHHHSCHHHHST-------TTCTTTTCEEEEEEEE
T ss_pred HHHHhhcccccC-------CCcCCCCCEEEEEEeC
Confidence 355555555443 2677888888877543
No 8
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=16.54 E-value=1.4e+02 Score=21.87 Aligned_cols=28 Identities=11% Similarity=0.382 Sum_probs=22.2
Q ss_pred hhHHHHhhhhhcccChHHHHHHHHHHHH
Q 022370 255 VDEFTDKLVEEEALAEDQKDAFKDFVKE 282 (298)
Q Consensus 255 ~eeF~DklI~eE~Lp~Dqk~kfkeFvKE 282 (298)
...+...+++.++|++++.+.|..+|+.
T Consensus 95 ~~~~~~~~~~~~~ls~ee~~~l~~~L~~ 122 (126)
T 1sd4_A 95 MKSLVLNFAKNEELNNKEIEELRDILND 122 (126)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 3456666776789999999999998864
No 9
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=14.81 E-value=1.1e+02 Score=21.96 Aligned_cols=22 Identities=18% Similarity=0.284 Sum_probs=17.8
Q ss_pred cccChHHHHHHHHHHHHHHHHH
Q 022370 266 EALAEDQKDAFKDFVKEKVREA 287 (298)
Q Consensus 266 E~Lp~Dqk~kfkeFvKE~Vre~ 287 (298)
..|++++++.+..||+.-..++
T Consensus 88 ~~l~~e~~~~i~~~i~~l~~~~ 109 (111)
T 1b0n_A 88 SGVSKKQFREFLDYQKWRKSQK 109 (111)
T ss_dssp SCCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHHHHHHHHHhcc
Confidence 7999999999999997655443
No 10
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=14.74 E-value=82 Score=30.90 Aligned_cols=70 Identities=23% Similarity=0.497 Sum_probs=43.5
Q ss_pred chHHhhhhhccccccccchhhhhhccCCccccHHHHhhCccccCcEEEEeecCcceeecccCCceeeeecEEEEEecCCC
Q 022370 63 NMEDLWKEVFPVGTEWDQLDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCTEPQLVPYENKNKIVCIPVVVAVVSPFP 142 (298)
Q Consensus 63 nledlWk~~fPVGtEwd~~d~~~~~~W~F~nLe~aleEGg~L~gk~vYlFg~tEPqlv~~~ge~k~v~IP~VVavdsp~P 142 (298)
++.|..+..||-|+-|+--- .||.||.+--+.-|= ..|...+-.+. +.-..||
T Consensus 224 ~i~~~fk~~~p~g~t~~R~~--------------~fedgg~~t~~~~~~----------l~~~~~~~~~~---~~g~nFp 276 (440)
T 3u0k_A 224 GIPDFFKQSFPEGFTWERVT--------------RYEDGGVITVMQDTS----------LEDGCLVYHAQ---VRGVNFP 276 (440)
T ss_dssp TSCCHHHHTTTTCEEEEEEE--------------EETTSCEEEEEEEEE----------EETTEEEEEEE---EEEECCC
T ss_pred CchhHHHHhCcCCceeeEEE--------------EecCCCEEEEeeeeE----------eeCCEEEEEee---eccCCCC
Confidence 35555688999999987532 347899766433332 22332223322 2334788
Q ss_pred CCccccccceeccceeeeecccccccccccc
Q 022370 143 PSDKIGIKSVQREVEEIVPMKEMKMDWVPYI 173 (298)
Q Consensus 143 PsdKIGi~SVQ~~~eeIvpmk~mkm~W~PYi 173 (298)
++.-+ |+.-++.|-|-.
T Consensus 277 ~~GPV--------------MKKKTl~wePs~ 293 (440)
T 3u0k_A 277 SNGAV--------------MQKKTKGWEPTR 293 (440)
T ss_dssp TTSTT--------------TTTCEEEECCBC
T ss_pred CCCCc--------------cchhhhhhHhhH
Confidence 88765 888999998864
Done!