Query 022370
Match_columns 298
No_of_seqs 40 out of 42
Neff 2.9
Searched_HMMs 13730
Date Mon Mar 25 04:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022370.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022370hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1okra_ a.4.5.39 (A:) Methicil 27.0 14 0.001 26.6 2.0 30 253-282 90-119 (120)
2 d1w55a1 c.68.1.13 (A:3-207) Is 20.6 20 0.0014 28.4 1.8 49 65-117 138-186 (205)
3 d1o17a1 a.46.2.1 (A:1-70) Anth 19.7 24 0.0018 23.3 1.9 31 255-285 3-34 (70)
4 d2tpta1 a.46.2.1 (A:1-70) Thym 18.9 31 0.0023 22.9 2.4 33 255-287 4-37 (70)
5 d1sd4a_ a.4.5.39 (A:) Penicill 16.0 73 0.0053 23.0 4.1 59 216-283 61-119 (122)
6 d1jqlb_ c.37.1.20 (B:) delta s 15.3 24 0.0018 25.5 1.1 26 92-121 7-32 (140)
7 d1vdra_ c.71.1.1 (A:) Dihydrof 12.7 26 0.0019 26.5 0.7 27 91-117 78-104 (157)
8 d1g7sa2 b.43.3.1 (A:460-587) I 12.4 99 0.0072 23.0 4.0 45 109-159 12-59 (128)
9 d1uoua1 a.46.2.1 (A:33-100) Th 11.9 69 0.005 21.1 2.6 35 253-287 2-37 (68)
10 d2o4ta1 a.69.4.1 (A:16-105) Un 11.8 82 0.006 22.6 3.2 13 253-265 61-73 (90)
No 1
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=27.02 E-value=14 Score=26.63 Aligned_cols=30 Identities=17% Similarity=0.441 Sum_probs=26.7
Q ss_pred cchhHHHHhhhhhcccChHHHHHHHHHHHH
Q 022370 253 DEVDEFTDKLVEEEALAEDQKDAFKDFVKE 282 (298)
Q Consensus 253 DD~eeF~DklI~eE~Lp~Dqk~kfkeFvKE 282 (298)
..+..++..++++++|++++-+.++..|.+
T Consensus 90 ~~~~~~~~~~~~~~~ls~~el~~L~~lL~~ 119 (120)
T d1okra_ 90 GGFNSLVLNFVEKEDLSQDEIEELRNILNK 119 (120)
T ss_dssp TCHHHHHHHHHHHSCCCHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHccCCCHHHHHHHHHHHhc
Confidence 567899999999999999999999988864
No 2
>d1w55a1 c.68.1.13 (A:3-207) IspD/IspF bifunctional enzyme, CDP-me synthase domain {Campylobacter jejuni [TaxId: 197]}
Probab=20.56 E-value=20 Score=28.42 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=40.1
Q ss_pred HHhhhhhccccccccchhhhhhccCCccccHHHHhhCccccCcEEEEeecCcc
Q 022370 65 EDLWKEVFPVGTEWDQLDSVYQFKWNFSNLEDAFEEGGVLYGKKVYLFGCTEP 117 (298)
Q Consensus 65 edlWk~~fPVGtEwd~~d~~~~~~W~F~nLe~aleEGg~L~gk~vYlFg~tEP 117 (298)
+.+|..-+|-||..+.+...++.+++|.+--..++ .+|.+|++.-|...
T Consensus 138 ~~l~~~qTPQ~f~~~~l~~a~~~~~~~tDd~~~~~----~~g~~v~~i~g~~~ 186 (205)
T d1w55a1 138 EKIKLIQTPQISKTKLLKKALDQNLEFTDDSTAIA----AMGGKIWFVEGEEN 186 (205)
T ss_dssp GGCCEECSCEEEEHHHHHHHTSSCCCCSSHHHHHH----TTTCCEEEEECCGG
T ss_pred hheeeeecchhhhhHHHHHHHHcCCCCCcHHHHHH----HcCCCEEEEecCcc
Confidence 78999999999999999999999998877555666 45788988887644
No 3
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=19.70 E-value=24 Score=23.33 Aligned_cols=31 Identities=19% Similarity=0.427 Sum_probs=22.2
Q ss_pred hhHHHHhhhhhcccChHH-HHHHHHHHHHHHH
Q 022370 255 VDEFTDKLVEEEALAEDQ-KDAFKDFVKEKVR 285 (298)
Q Consensus 255 ~eeF~DklI~eE~Lp~Dq-k~kfkeFvKE~Vr 285 (298)
+++++++|+.-+.|+.+| +..|...+..++.
T Consensus 3 ~~~il~~l~~g~~Ls~~e~~~~~~~i~~g~~s 34 (70)
T d1o17a1 3 INEILKKLINKSDLEINEAEELAKAIIRGEVP 34 (70)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCC
Confidence 567888888888888888 5566655544443
No 4
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=18.90 E-value=31 Score=22.92 Aligned_cols=33 Identities=15% Similarity=0.264 Sum_probs=25.1
Q ss_pred hhHHHHhhhhhcccChHH-HHHHHHHHHHHHHHH
Q 022370 255 VDEFTDKLVEEEALAEDQ-KDAFKDFVKEKVREA 287 (298)
Q Consensus 255 ~eeF~DklI~eE~Lp~Dq-k~kfkeFvKE~Vre~ 287 (298)
++|++.+|..-+.|+.+| +..|...+..++...
T Consensus 4 ~qeiI~k~~~g~~Ls~~E~~~~~~~i~~g~~~d~ 37 (70)
T d2tpta1 4 AQEIIRKKRDGHALSDEEIRFFINGIRDNTISEG 37 (70)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTCSCHH
T ss_pred HHHHHHHHHCCCCcCHHHHHHHHHHHHcCCchHH
Confidence 578899999999999998 667777766655443
No 5
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=15.96 E-value=73 Score=23.04 Aligned_cols=59 Identities=10% Similarity=0.273 Sum_probs=40.3
Q ss_pred cccccCCCCCcccccccEEEEEeecCCCccccccccccchhHHHHhhhhhcccChHHHHHHHHHHHHH
Q 022370 216 LPYFYQPFKEDEFEQSTVVQIMFPVEPPVVCEFDWEFDEVDEFTDKLVEEEALAEDQKDAFKDFVKEK 283 (298)
Q Consensus 216 LPY~y~P~~e~e~e~~TvV~I~fpleppvvcefdwE~DD~eeF~DklI~eE~Lp~Dqk~kfkeFvKE~ 283 (298)
-.|+|.|....+.-....+.=+.-- +| + .++..++-.+++++.|+.++-+.+++.|.+.
T Consensus 61 r~~~Y~~~v~~~~~~~~~~~~~~~~----~~--~---gs~~~lv~~~~~~~~ls~~el~eL~~~l~~~ 119 (122)
T d1sd4a_ 61 NIYFYSSNIKEDDIKMKTAKTFLNK----LY--G---GDMKSLVLNFAKNEELNNKEIEELRDILNDI 119 (122)
T ss_dssp TEEEEEECSCHHHHHHHHHHHHHHH----HH--T---TCHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred CeEEEeecCCHHHHHHHHHHHHHHH----Hh--C---CCHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 5678888877764333222211000 11 1 5678899999999999999999999998864
No 6
>d1jqlb_ c.37.1.20 (B:) delta subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=15.31 E-value=24 Score=25.51 Aligned_cols=26 Identities=31% Similarity=0.597 Sum_probs=20.6
Q ss_pred cccHHHHhhCccccCcEEEEeecCcceeec
Q 022370 92 SNLEDAFEEGGVLYGKKVYLFGCTEPQLVP 121 (298)
Q Consensus 92 ~nLe~aleEGg~L~gk~vYlFg~tEPqlv~ 121 (298)
..|.+.|+.| + ++|||+-|.||.|+.
T Consensus 7 ~~L~~~l~k~--l--~~vyll~G~E~~L~~ 32 (140)
T d1jqlb_ 7 EQLRAQLNEG--L--RAAYLLLGNDPLLLQ 32 (140)
T ss_dssp GGHHHHHHHC--C--CSEEEEESSCHHHHH
T ss_pred HHHHHHHhcC--C--CcEEEEEcChHHHHH
Confidence 3578888754 3 389999999999975
No 7
>d1vdra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Haloferax volcanii [TaxId: 2246]}
Probab=12.69 E-value=26 Score=26.52 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=18.4
Q ss_pred ccccHHHHhhCccccCcEEEEeecCcc
Q 022370 91 FSNLEDAFEEGGVLYGKKVYLFGCTEP 117 (298)
Q Consensus 91 F~nLe~aleEGg~L~gk~vYlFg~tEP 117 (298)
+++++++++.=-....+.||+.||++=
T Consensus 78 ~~s~~~a~~~~~~~~~~~i~IiGG~~i 104 (157)
T d1vdra_ 78 AASVEEAVDIAASLDAETAYVIGGAAI 104 (157)
T ss_dssp ESSHHHHHHHHHHTTCSCEEEEECHHH
T ss_pred EeeHHHHHHHHhcCCCceEEEEechHH
Confidence 566777765422233689999999874
No 8
>d1g7sa2 b.43.3.1 (A:460-587) Initiation factor IF2/eIF5b, domains 2 and 4 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.43 E-value=99 Score=22.96 Aligned_cols=45 Identities=18% Similarity=0.322 Sum_probs=29.7
Q ss_pred EEEeecCcceeecccCCcee--eeecEEEEEecCCCCCcccc-ccceeccceee
Q 022370 109 VYLFGCTEPQLVPYENKNKI--VCIPVVVAVVSPFPPSDKIG-IKSVQREVEEI 159 (298)
Q Consensus 109 vYlFg~tEPqlv~~~ge~k~--v~IP~VVavdsp~PPsdKIG-i~SVQ~~~eeI 159 (298)
-|+|-.+-|.+++.+=++-. +..|++ ++|+.++| ++|||+.++.+
T Consensus 12 ~~vFr~~~p~ivgv~V~sG~ik~G~~l~------~~p~~~~g~VksIq~~~~~v 59 (128)
T d1g7sa2 12 KLVFRQSKPAIGGVEVLTGVIRQGYPLM------NDDGETVGTVESMQDKGENL 59 (128)
T ss_dssp EEEEECSSSEEEEEEEEEEEEETTCEEE------CTTSCEEEEEEEEEETTEEE
T ss_pred CcEecCCCCeEEEEEEeeeeecCCCEEE------ECCCCceEEEEEEEECCccc
Confidence 47888899988874211111 344443 46888888 68999988754
No 9
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.92 E-value=69 Score=21.10 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=25.5
Q ss_pred cchhHHHHhhhhhcccChHH-HHHHHHHHHHHHHHH
Q 022370 253 DEVDEFTDKLVEEEALAEDQ-KDAFKDFVKEKVREA 287 (298)
Q Consensus 253 DD~eeF~DklI~eE~Lp~Dq-k~kfkeFvKE~Vre~ 287 (298)
..+.+++.++..-+.|+.+| +..|.+.+..+|...
T Consensus 2 ~~~~eiI~k~~~g~~Ls~~E~~~~~~~i~~g~~s~~ 37 (68)
T d1uoua1 2 KQLPELIRMKRDGGRLSEADIRGFVAAVVNGSAQGA 37 (68)
T ss_dssp CCHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCSCHH
T ss_pred ccHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCCHH
Confidence 35678889999889999888 666666666555443
No 10
>d2o4ta1 a.69.4.1 (A:16-105) Uncharacterized protein BH3976 {Bacillus halodurans [TaxId: 86665]}
Probab=11.84 E-value=82 Score=22.56 Aligned_cols=13 Identities=31% Similarity=0.657 Sum_probs=11.8
Q ss_pred cchhHHHHhhhhh
Q 022370 253 DEVDEFTDKLVEE 265 (298)
Q Consensus 253 DD~eeF~DklI~e 265 (298)
+|+.+|+|+||.+
T Consensus 61 ~D~~~f~deli~~ 73 (90)
T d2o4ta1 61 TDVAAFCDALIGD 73 (90)
T ss_dssp SCHHHHHHHTTSC
T ss_pred CCHHHHHHHHHhh
Confidence 8999999999986
Done!