BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022372
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I1N|A Chain A, Human Protein L-Isoaspartate O-Methyltransferase With S-
Adenosyl Homocysteine
pdb|1KR5|A Chain A, Crystal Structure Of Human L-Isoaspartyl Methyltransferase
Length = 226
Score = 215 bits (548), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 115/229 (50%), Positives = 152/229 (66%), Gaps = 6/229 (2%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G + ++ ++ +L+ G+I + KV EVM DR+ + PY+DSP +IG+ AT
Sbjct: 1 AWKSGGASHSE-LIHNLRKNGIIKTDKVFEVMLATDRSHYAK--CNPYMDSPQSIGFQAT 57
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191
ISAPHMHA L+LL + L G ALD+GSG+G LTACFA MVG G+ +G++HI ELV
Sbjct: 58 ISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDD 117
Query: 192 SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGG 251
S+ N+ K LL G + + VGDGR G+ E APYDAIHVGAAAP +PQALIDQLKPGG
Sbjct: 118 SVNNVRKDDPT-LLSSGRVQLVVGDGRMGYAEEAPYDAIHVGAAAPVVPQALIDQLKPGG 176
Query: 252 RMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298
R+++PVG Q L+ DK QDGS+ + V YVPLT ++ Q W
Sbjct: 177 RLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRW 225
>pdb|1R18|A Chain A, Drosophila Protein Isoaspartyl Methyltransferase With
S-Adenosyl-L- Homocysteine
Length = 227
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/224 (44%), Positives = 137/224 (61%), Gaps = 11/224 (4%)
Query: 72 SWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNAT 131
+W G N N+ ++ L+ +GVI S V++ M+ DR + P PY+D+P IG T
Sbjct: 8 AWRSVGAN-NEDLIRQLKDHGVIASDAVAQAMKETDRKHYSPRN--PYMDAPQPIGGGVT 64
Query: 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG-----RAVGVEHIP 186
ISAPHMHA L+ L ++LKPG LD+GSG+GYLTACF + +G R VG+EH
Sbjct: 65 ISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQA 124
Query: 187 ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ 246
ELV S N+ + +L G L + GDGRKG+P APY+AIHVGAAAP+ P LI+Q
Sbjct: 125 ELVRRSKANLNTDDRS-MLDSGQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPTELINQ 183
Query: 247 LKPGGRMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPL 288
L GGR+++PVG Q ++ DK+ +G + + V YVPL
Sbjct: 184 LASGGRLIVPVGPDGGSQYMQQYDKDANGKVEMTRLMGVMYVPL 227
>pdb|2YXE|A Chain A, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
pdb|2YXE|B Chain B, Crystal Structure Of L-Isoaspartyl Protein Carboxyl
Methyltranferase
Length = 215
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 122/217 (56%), Gaps = 11/217 (5%)
Query: 79 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPY--VDSPMAIGYNATISAPH 136
+ KA++E L G I SK+V + + + R F+P+ Y VD+P+ IGY TISA H
Sbjct: 5 EQKKAVIEKLIREGYIKSKRVIDALLKVPREEFLPEHLKEYAYVDTPLEIGYGQTISAIH 64
Query: 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 196
M +LL +LKPGM L+IG+G GY A A +VG G V +E IPEL + + +
Sbjct: 65 MVGMMCELL--DLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTL 122
Query: 197 EKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256
K L ++ V VGDG G+ APYD I+ AA P+IP+ LI QLK GG++++P
Sbjct: 123 RK------LGYDNVIVIVGDGTLGYEPLAPYDRIYTTAAGPKIPEPLIRQLKDGGKLLMP 176
Query: 257 VGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293
VG Q L + +K D + I V +VPL ++
Sbjct: 177 VGRYLQRLVLAEKRGD-EIIIKDCGPVAFVPLVGKEG 212
>pdb|2PBF|A Chain A, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
pdb|2PBF|B Chain B, Crystal Structure Of A Putative Protein-L-Isoaspartate O-
Methyltransferase Beta-Aspartate Methyltransferase
(Pcmt) From Plasmodium Falciparum In Complex With
S-Adenosyl-L-Homocysteine
Length = 227
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 110/188 (58%), Gaps = 13/188 (6%)
Query: 79 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMH 138
N +K+++E+L+ G+I V M +DR ++ + PY+D+P+ I + TISAPHMH
Sbjct: 10 NNHKSLLENLKRRGIIDDDDVYNTMLQVDRGKYIKE--IPYIDTPVYISHGVTISAPHMH 67
Query: 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFAL----MVGPQGRAVGVEHIPELVVSSIQ 194
A L+ L LKPG A+D+GSG+GYLT C A+ + +G+E + +LV S++
Sbjct: 68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLE 127
Query: 195 NIEKSAAAPLLKEGSLSVH-----VGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKP 249
NI++ L + +H V + K E +DAIHVGA+A E+P+ L+D L
Sbjct: 128 NIKRDKPELLKIDNFKIIHKNIYQVNEEEK--KELGLFDAIHVGASASELPEILVDLLAE 185
Query: 250 GGRMVIPV 257
G+++IP+
Sbjct: 186 NGKLIIPI 193
>pdb|1JG4|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosylmethionine
pdb|1JG3|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG3|B Chain B, Crystal Structure Of L-Isoaspartyl (D-Aspartyl)
O-Methyltransferase With Adenosine & Vyp(Isp)ha
Substrate
pdb|1JG2|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With Adenosine
pdb|1JG1|A Chain A, Crystal Structure Of L-Isoaspartyl (D-Aspartyl) O-
Methyltransferase With S-Adenosyl-L-Homocysteine
Length = 235
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 86/210 (40%), Positives = 125/210 (59%), Gaps = 19/210 (9%)
Query: 85 VEHLQHYGVITSKKVSEVMETIDRACFVPDGTPPY--VDSPMAIGYNATISAPHMHATCL 142
VE L+ G+I SK+V R V D Y +D P+ I T+SAPHM A L
Sbjct: 25 VEMLKAEGIIRSKEVERAFLKYPRYLSVEDKYKKYAHIDEPLPIPAGQTVSAPHMVAIML 84
Query: 143 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 202
++ NLKPGM+ L++G+G+G+ A + +V + +E IPELV + +N+E++
Sbjct: 85 EI--ANLKPGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERA--- 137
Query: 203 PLLKEGSLSVHV--GDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG-- 258
G +VHV GDG KG+P APYD I V A AP+IP+ LI+QLK GG+++IPVG
Sbjct: 138 -----GVKNVHVILGDGSKGFPPKAPYDVIIVTAGAPKIPEPLIEQLKIGGKLIIPVGSY 192
Query: 259 NIFQDLKVVDKNQDGSLSIWSETSVRYVPL 288
+++Q+L V K +DG + I + V +VPL
Sbjct: 193 HLWQELLEVRKTKDG-IKIKNHGGVAFVPL 221
>pdb|3LBF|A Chain A, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|B Chain B, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|C Chain C, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
pdb|3LBF|D Chain D, Crystal Structure Of Protein L-Isoaspartyl
Methyltransferase From Escherichia Coli
Length = 210
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 113/216 (52%), Gaps = 19/216 (8%)
Query: 79 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPH 136
+ +A+++ L+ G I ++V + + R FV + + + + IG TIS P+
Sbjct: 6 RRVQALLDQLRAQG-IQDEQVLNALAAVPREKFVDEAFEQKAWDNIALPIGQGQTISQPY 64
Query: 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 196
M A +LLE L P L+IG+G+GY TA A +V +H+ V I+ +
Sbjct: 65 MVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHLV---------QHV--CSVERIKGL 111
Query: 197 EKSAAAPL--LKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMV 254
+ A L L ++S GDG +GW AP+DAI V AA PEIP AL+ QL GG +V
Sbjct: 112 QWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMTQLDEGGILV 171
Query: 255 IPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTS 290
+PVG Q LK V + + G I + +VR+VPL
Sbjct: 172 LPVGEEHQYLKRV-RRRGGEFIIDTVEAVRFVPLVK 206
>pdb|1DL5|A Chain A, Protein-L-Isoaspartate O-Methyltransferase
pdb|1DL5|B Chain B, Protein-L-Isoaspartate O-Methyltransferase
Length = 317
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 17/177 (9%)
Query: 88 LQHYGVITSKKVSEVMETIDRACFVPDGTP-PYV-DSPMAIGYN-----ATISAPHMHAT 140
L+ YGV S +++ I R F+ P YV + + + Y+ +T S P + A
Sbjct: 9 LKKYGV--SDHIAKAFLEIPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMAL 66
Query: 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 200
++ + L GM L+IG GTGY A + +VG +G V VE+ ++ + +N+E+
Sbjct: 67 FMEWV--GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG 124
Query: 201 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 257
++ GDG G PEF+PYD I V E+P+ QLK GGR+++P+
Sbjct: 125 IENVI------FVCGDGYYGVPEFSPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI 175
>pdb|1VBF|A Chain A, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|B Chain B, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|C Chain C, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
pdb|1VBF|D Chain D, Crystal Structure Of Protein L-Isoaspartate
O-Methyltransferase Homologue From Sulfolobus Tokodaii
Length = 231
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 93/195 (47%), Gaps = 23/195 (11%)
Query: 94 ITSKKVSEVMETIDRACFVPDGTPPYVDSPMAIGYNATISAPHMHATCLQL----LEE-N 148
I +++++E +DR+ F+P+ Y A + A P ++ T L L L+E +
Sbjct: 11 IKTQELAEAFNKVDRSLFLPENLKDYA---YAHTHEALPILPGINTTALNLGIFXLDELD 67
Query: 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE- 207
L G L+IG+G GY TA A +V + V VE I + A+ LL
Sbjct: 68 LHKGQKVLEIGTGIGYYTALIAEIVD---KVVSVE---------INEKXYNYASKLLSYY 115
Query: 208 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP--VGNIFQDLK 265
++ + +GDG G+ E PYD + V A AP + +QLK GG ++P VG + + K
Sbjct: 116 NNIKLILGDGTLGYEEEKPYDRVVVWATAPTLLCKPYEQLKEGGIXILPIGVGRVQKLYK 175
Query: 266 VVDKNQDGSLSIWSE 280
V+ K SL E
Sbjct: 176 VIKKGNSPSLENLGE 190
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 35/168 (20%)
Query: 108 RACFVPDGTPPYV-----------DSPMAIGYNATISAPHMHATCLQL--LEENLKPGMH 154
R P PP+V + P+ I H T L L L +L+PG
Sbjct: 64 RRDLKPALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHAETTRLALKALARHLRPGDK 123
Query: 155 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214
LD+G+G+G L A A +G G+A+GV+ P ++ + N +++ P EGSL +
Sbjct: 124 VLDLGTGSGVL-AIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAAL 180
Query: 215 GDGRKGWPEFAPYDAIHV-------GAAAPEIPQALIDQLKPGGRMVI 255
F P+D + A AP +AL+ PGGR ++
Sbjct: 181 --------PFGPFDLLVANLYAELHAALAPRYREALV----PGGRALL 216
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 35/168 (20%)
Query: 108 RACFVPDGTPPYV-----------DSPMAIGYNATISAPHMHATCLQL--LEENLKPGMH 154
R P PP+V + P+ I H T L L L +L+PG
Sbjct: 64 RRDLKPALAPPFVVLAPWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDK 123
Query: 155 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214
LD+G+G+G L A A +G G+A+GV+ P ++ + N +++ P EGSL +
Sbjct: 124 VLDLGTGSGVL-AIAAEKLG--GKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAAL 180
Query: 215 GDGRKGWPEFAPYDAIHV-------GAAAPEIPQALIDQLKPGGRMVI 255
F P+D + A AP +AL+ PGGR ++
Sbjct: 181 --------PFGPFDLLVANLYAELHAALAPRYREALV----PGGRALL 216
>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
(Tm0748) From Thermotoga Maritima At 1.65 A Resolution
Length = 277
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 73/182 (40%), Gaps = 18/182 (9%)
Query: 117 PPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ 176
P +D M + I P + +L ++K G +D G G+G + A A VG
Sbjct: 80 PSLIDEIMNMKRRTQIVYPKDSSFIAMML--DVKEGDRIIDTGVGSGAMCAVLARAVGSS 137
Query: 177 GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236
G+ E E + N+ K +++ V D +G+ E DA+ +
Sbjct: 138 GKVFAYEKREEFAKLAESNLTKWGLIE-----RVTIKVRDISEGFDE-KDVDALFLD--V 189
Query: 237 PEIPQALIDQ----LKPGGRM--VIPVGNIFQD-LKVVDKNQDGSLSIWSETSVRYVPLT 289
P+ P ID+ LK GGR V P N Q+ LK + + + +W Y P+
Sbjct: 190 PD-PWNYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELPFIRIEVWESLFRPYKPVP 248
Query: 290 SR 291
R
Sbjct: 249 ER 250
>pdb|2PWY|A Chain A, Crystal Structure Of A M1a58 Trna Methyltransferase
pdb|2PWY|B Chain B, Crystal Structure Of A M1a58 Trna Methyltransferase
Length = 258
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 15/164 (9%)
Query: 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPEL 188
+AT + P + + LL +L PGM L+ G+G+G LT A VG +G E P
Sbjct: 76 SATPTYPKDASAMVTLL--DLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHH 133
Query: 189 VVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQL 247
+ + +N+ + ++ H+G + E A YD + + P ++ + L
Sbjct: 134 LAQAERNVRA-----FWQVENVRFHLGKLEEAELEEAAYDGVALDLMEPWKVLEKAALAL 188
Query: 248 KPGGRMVIPVGNIFQDLKVVDKNQDGSLSI-------WSETSVR 284
KP +V + NI Q L++V + + W E VR
Sbjct: 189 KPDRFLVAYLPNITQVLELVRAAEAHPFRLERVLEVGWREWEVR 232
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 150 KPGMH--ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207
+PG + A+D+G GTG +T A G R ++ PE + ++ N+++
Sbjct: 30 EPGKNDVAVDVGCGTGGVTLELA---GRVRRVYAIDRNPEAISTTEXNLQRHGLGD---- 82
Query: 208 GSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQAL---IDQLKPGGRMVI 255
++++ GD + + D VG + E+ + L D+LKPGGR+++
Sbjct: 83 -NVTLXEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKPGGRIIV 132
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 144 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198
L E LK GM LD+G+G G+ + MVG +G+ ++ E+V + + + K
Sbjct: 30 LKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK 84
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 118/305 (38%), Gaps = 57/305 (18%)
Query: 17 NGAYCVICYDNDNQSCPCLTGIDPKIQLIVTPE---------VEAMDKKRSTLKISSSSV 67
G V + + CLT + +L + E V A+ R T + +S V
Sbjct: 64 EGRMAVERLETSRAAFRCLTASGLQARLALPWEAAAGAYDLVVLALPAGRGTAYVQASLV 123
Query: 68 LAERSWSGSGV-----NKNKAMVEHLQH------YGVITSKK---VSEVMETIDRACFVP 113
A R+ G +KNK + + YGV+ ++ ++E A +P
Sbjct: 124 AAARALRMGGRLYLAGDKNKGFERYFKEARALLGYGVVVRREGPYRVALLEKEKEAPPLP 183
Query: 114 DGTPPYVDSPMAIGYN-----ATISAPHMHATCLQLLE---ENLKP----GMHALDIGSG 161
+ + Y SA + L LLE E L P G LD+G+G
Sbjct: 184 SLWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAG 243
Query: 162 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221
G LT A M VGVE ++S+ +++K A LK +L V +
Sbjct: 244 YGALTLPLARM---GAEVVGVEDD----LASVLSLQKGLEANALKAQALHSDVDE---AL 293
Query: 222 PEFAPYDAI------HVGAAA-PEIPQALID----QLKPGGRMVIPVGNIFQDLKVVDKN 270
E A +D I HVG A ++ QA ++ +L+PGG + V N F + + +
Sbjct: 294 TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL-VSNPFLKYEPLLEE 352
Query: 271 QDGSL 275
+ G+
Sbjct: 353 KFGAF 357
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 118/305 (38%), Gaps = 57/305 (18%)
Query: 17 NGAYCVICYDNDNQSCPCLTGIDPKIQLIVTPE---------VEAMDKKRSTLKISSSSV 67
G V + + CLT + +L + E V A+ R T + +S V
Sbjct: 64 EGRMAVERLETSRAAFRCLTASGLQARLALPWEAAAGAYDLVVLALPAGRGTAYVQASLV 123
Query: 68 LAERSWSGSGV-----NKNKAMVEHLQH------YGVITSKK---VSEVMETIDRACFVP 113
A R+ G +KNK + + YGV+ ++ ++E A +P
Sbjct: 124 AAARALRMGGRLYLAGDKNKGFERYFKEARALLGYGVVVRREGPYRVALLEKEKEAPPLP 183
Query: 114 DGTPPYVDSPMAIGYN-----ATISAPHMHATCLQLLE---ENLKP----GMHALDIGSG 161
+ + Y SA + L LLE E L P G LD+G+G
Sbjct: 184 SLWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEGVRGRQVLDLGAG 243
Query: 162 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221
G LT A M VGVE ++S+ +++K A LK +L V +
Sbjct: 244 YGALTLPLARM---GAEVVGVEDD----LASVLSLQKGLEANALKAQALHSDVDE---AL 293
Query: 222 PEFAPYDAI------HVGAAA-PEIPQALID----QLKPGGRMVIPVGNIFQDLKVVDKN 270
E A +D I HVG A ++ QA ++ +L+PGG + V N F + + +
Sbjct: 294 TEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFL-VSNPFLKYEPLLEE 352
Query: 271 QDGSL 275
+ G+
Sbjct: 353 KFGAF 357
>pdb|3MB5|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Methionine
Length = 255
Score = 34.7 bits (78), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208
+ PG ++ G G+G LT A +VGP+GR V E + + +NI+ + +
Sbjct: 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF-----DD 145
Query: 209 SLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ----LKPGGRMV 254
+++ + D +G E + HV P+ P+ +++ LKPGG V
Sbjct: 146 RVTIKLKDIYEGIEE---ENVDHVILDLPQ-PERVVEHAAKALKPGGFFV 191
>pdb|3LHD|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LHD|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|A Chain A, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|B Chain B, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|C Chain C, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
pdb|3LGA|D Chain D, Crystal Structure Of P. Abyssi Trna M1a58
Methyltransferase In Complex With
S-Adenosyl-L-Homocysteine
Length = 253
Score = 34.7 bits (78), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 13/110 (11%)
Query: 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208
+ PG ++ G G+G LT A +VGP+GR V E + + +NI+ + +
Sbjct: 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGF-----DD 145
Query: 209 SLSVHVGDGRKGWPEFAPYDAIHVGAAAPEIPQALIDQ----LKPGGRMV 254
+++ + D +G E + HV P+ P+ +++ LKPGG V
Sbjct: 146 RVTIKLKDIYEGIEE---ENVDHVILDLPQ-PERVVEHAAKALKPGGFFV 191
>pdb|2B25|A Chain A, Human Putative Trna(1-Methyladenosine)methyltransferase
pdb|2B25|B Chain B, Human Putative Trna(1-Methyladenosine)methyltransferase
Length = 336
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 87/231 (37%), Gaps = 45/231 (19%)
Query: 67 VLAERSWSGSGVNKNKAMVEHLQHYGVITS--------KKVSEVMETIDRACFVPD---G 115
+LAE +G G K K + L ++G++ S K V + I R+ F
Sbjct: 16 ILAE---TGEGETKFKKLFR-LNNFGLLNSNWGAVPFGKIVGKFPGQILRSSFGKQYMLR 71
Query: 116 TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP 175
P D + + I+ P L +++ N PG L+ GSG+G ++ + VG
Sbjct: 72 RPALEDYVVLMKRGTAITFPKDINMILSMMDIN--PGDTVLEAGSGSGGMSLFLSKAVGS 129
Query: 176 QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA 235
QGR + E V ++ K LS HV + WP+ + + A
Sbjct: 130 QGRVISFE-----VRKDHHDLAKKNYKHWRDSWKLS-HVEE----WPDNVDFIHKDISGA 179
Query: 236 APEIPQALID------------------QLKPGGRMVIPVGNIFQDLKVVD 268
+I D LK GG + V NI Q ++++D
Sbjct: 180 TEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYVVNITQVIELLD 230
>pdb|1EIZ|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine
pdb|1EJ0|A Chain A, Ftsj Rna Methyltransferase Complexed With S-
Adenosylmethionine, Mercury Derivative
Length = 180
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 16/128 (12%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA 201
+Q ++ KPGM +D+G+ G + +G +GR + + +P + + ++
Sbjct: 13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFR 72
Query: 202 APLLKEGSLSVHVGDGRKG--WPEFAPYDAIHVGAAAPEIPQALI----------DQLKP 249
L+ + L VGD + + AP + G A +IP+A+ D L P
Sbjct: 73 DELVMKALLE-RVGDSKVQVVMSDMAPNMS---GTPAVDIPRAMYLVELALEMCRDVLAP 128
Query: 250 GGRMVIPV 257
GG V+ V
Sbjct: 129 GGSFVVKV 136
>pdb|4DF3|A Chain A, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
pdb|4DF3|B Chain B, Crystal Structure Of Aeropyrum Pernix Fibrillarin In
Complex With Natively Bound S-adenosyl-l-methionine At
1.7a
Length = 233
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 56/124 (45%), Gaps = 21/124 (16%)
Query: 144 LLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI-EKSAAA 202
L+E +K G L +G +G + + ++GP+GR GVE P ++ + + ++
Sbjct: 70 LIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIF 129
Query: 203 PLLKEGSLSVHVGDGRKGWPEFAPY-----DAIHVGAAAPEIPQALIDQ----LKPGGRM 253
P+L GD R +PE + D ++ A PE ++ L+ GG M
Sbjct: 130 PIL---------GDAR--FPEKYRHLVEGVDGLYADVAQPEQAAIVVRNARFFLRDGGYM 178
Query: 254 VIPV 257
++ +
Sbjct: 179 LMAI 182
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 48/124 (38%), Gaps = 23/124 (18%)
Query: 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 200
LQLL N +PG LD+G GTG LT A +G ++ + + QN
Sbjct: 49 LLQLL--NPQPGEFILDLGCGTGQLTEKIA---QSGAEVLGTDNAATXIEKARQNYPH-- 101
Query: 201 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA-----APEIPQALIDQ-LKPGGRMV 254
L V D R + P DA+ A PE A I Q LK GGR V
Sbjct: 102 ---------LHFDVADARNFRVD-KPLDAVFSNAXLHWVKEPEAAIASIHQALKSGGRFV 151
Query: 255 IPVG 258
G
Sbjct: 152 AEFG 155
>pdb|3G07|A Chain A, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|B Chain B, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|C Chain C, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|D Chain D, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|E Chain E, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
pdb|3G07|F Chain F, Methyltransferase Domain Of Human Bicoid-Interacting
Protein 3 Homolog (Drosophila)
Length = 292
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 197
L++L+ G LD+G G+LT A GP R VG++ L+ S+ QNI
Sbjct: 37 LRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS-RXVGLDIDSRLIHSARQNIR 91
>pdb|1I9G|A Chain A, Crystal Structure Of An Adomet Dependent Methyltransferase
Length = 280
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 117 PPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ 176
P VD M++ + P A + E ++ PG L+ G+G+G LT VGP
Sbjct: 67 PLLVDYVMSMPRGPQVIYPKDAAQIVH--EGDIFPGARVLEAGAGSGALTLSLLRAVGPA 124
Query: 177 GRAVGVEHIPELVVSSIQNI 196
G+ + E + + +N+
Sbjct: 125 GQVISYEQRADHAEHARRNV 144
>pdb|3BKX|A Chain A, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
pdb|3BKX|B Chain B, Crystal Structure Of Cyclopropane-fatty-acyl-phospholipid
Synthase- Like Protein (yp_807781.1) From Lactobacillus
Casei Atcc 334 At 1.85 A Resolution
Length = 275
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVE 183
+KPG L+IG G G L+A A VG G G++
Sbjct: 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGID 75
>pdb|2OUX|A Chain A, Crystal Structure Of The Soluble Part Of A Magnesium
Transporter
pdb|2OUX|B Chain B, Crystal Structure Of The Soluble Part Of A Magnesium
Transporter
Length = 286
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 166 TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219
T + +V + VGV + +L+V N + + A +L E +SVHVGD ++
Sbjct: 172 TIYYVYVVDQENHLVGVISLRDLIV----NDDDTLIADILNERVISVHVGDDQE 221
>pdb|1G8A|A Chain A, Pyrococcus Horikoshii Fibrillarin Pre-Rrna Processing
Protein
Length = 227
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 17/117 (14%)
Query: 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI-EKSAAAPLLKE 207
+KPG L +G +G + + +VG +G+ G+E P ++ + + E+ P+L
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPIL-- 128
Query: 208 GSLSVHVGDGRK--GWPEFAP-YDAIHVGAAAPEIPQALIDQ----LKPGGRMVIPV 257
GD K + P D I A P + LID LK GG +I V
Sbjct: 129 -------GDATKPEEYRALVPKVDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIAV 178
>pdb|1PRY|A Chain A, Structure Determination Of Fibrillarin Homologue From
Hyperthermophilic Archaeon Pyrococcus Furiosus
(Pfu-65527)
Length = 227
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 21/119 (17%)
Query: 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI-EKSAAAPLLKE 207
+KPG L +G +G + + +VG +G+ G+E P ++ + + E+ P+L
Sbjct: 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPIL-- 128
Query: 208 GSLSVHVGDGRKGWPE-----FAPYDAIHVGAAAPEIPQALIDQ----LKPGGRMVIPV 257
GD K PE D I A P + LID LK GG +I V
Sbjct: 129 -------GDATK--PEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAV 178
>pdb|2NNW|B Chain B, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|2NNW|D Chain D, Alternative Conformations Of Nop56/58-fibrillarin Complex
And Implication For Induced-fit Assenly Of Box C/d Rnps
pdb|3NMU|F Chain F, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NMU|J Chain J, Crystal Structure Of Substrate-Bound Halfmer Box CD RNP
pdb|3NVK|I Chain I, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVK|J Chain J, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
pdb|3NVM|B Chain B, Structural Basis For Substrate Placement By An Archaeal
Box CD Ribonucleoprotein Particle
Length = 234
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 21/119 (17%)
Query: 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI-EKSAAAPLLKE 207
+KPG L +G +G + + +VG +G+ G+E P ++ + + E+ P+L
Sbjct: 78 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIYGIEFSPRVLRELVPIVEERRNIIPIL-- 135
Query: 208 GSLSVHVGDGRKGWPE-----FAPYDAIHVGAAAPEIPQALIDQ----LKPGGRMVIPV 257
GD K PE D I A P + LID LK GG +I V
Sbjct: 136 -------GDATK--PEEYRALVTKVDVIFEDVAQPTQAKILIDNAKAYLKRGGYGMIAV 185
>pdb|2REH|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2REH|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 21 CVICYDNDNQSCPCLTGIDPKIQ---LIVTPEVEAMDKK 56
CV+C +D+ S P +DP Q L+VT E A +KK
Sbjct: 185 CVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKK 223
>pdb|3D9D|A Chain A, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|B Chain B, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|C Chain C, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9D|D Chain D, Nitroalkane Oxidase: Mutant D402n Crystallized With
1-Nitrohexane
pdb|3D9E|A Chain A, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|B Chain B, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|C Chain C, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3D9E|D Chain D, Nitroalkane Oxidase: Active Site Mutant D402n Crystallized
With 1- Nitrooctane
pdb|3FCJ|A Chain A, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|B Chain B, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|C Chain C, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
pdb|3FCJ|D Chain D, Nitroalkane Oxidase: Mutant402n Crystallized With
Nitroethane
Length = 438
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 21 CVICYDNDNQSCPCLTGIDPKIQ---LIVTPEVEAMDKK 56
CV+C +D+ S P +DP Q L+VT E A +KK
Sbjct: 184 CVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKK 222
>pdb|3D9G|A Chain A, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|B Chain B, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|C Chain C, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
pdb|3D9G|D Chain D, Nitroalkane Oxidase: Wild Type Crystallized In A Trapped
State Forming A Cyanoadduct With Fad
Length = 438
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 21 CVICYDNDNQSCPCLTGIDPKIQ---LIVTPEVEAMDKK 56
CV+C +D+ S P +DP Q L+VT E A +KK
Sbjct: 184 CVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKK 222
>pdb|2C12|A Chain A, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|B Chain B, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|C Chain C, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|D Chain D, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|E Chain E, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
pdb|2C12|F Chain F, Crystal Structure Of Nitroalkane Oxidase In Complex With
Spermine, A Competitive Inhibitor
Length = 439
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 21 CVICYDNDNQSCPCLTGIDPKIQ---LIVTPEVEAMDKK 56
CV+C +D+ S P +DP Q L+VT E A +KK
Sbjct: 185 CVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKK 223
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|B Chain B, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|C Chain C, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
pdb|3D9F|D Chain D, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized
With 1- Nitrohexane
Length = 438
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 21 CVICYDNDNQSCPCLTGIDPKIQ---LIVTPEVEAMDKK 56
CV+C +D+ S P +DP Q L+VT E A +KK
Sbjct: 184 CVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKK 222
>pdb|2C0U|A Chain A, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|B Chain B, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|C Chain C, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
pdb|2C0U|D Chain D, Crystal Structure Of A Covalent Complex Of Nitroalkane
Oxidase Trapped During Substrate Turnover
Length = 439
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 21 CVICYDNDNQSCPCLTGIDPKIQ---LIVTPEVEAMDKK 56
CV+C +D+ S P +DP Q L+VT E A +KK
Sbjct: 185 CVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKK 223
>pdb|2ZAF|A Chain A, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|B Chain B, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|C Chain C, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
pdb|2ZAF|D Chain D, Mechanistic And Structural Analyses Of The Roles Of Arg409
And Asp402 In The Reaction Of The Flavoprotein
Nitroalkane Oxidase
Length = 439
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 21 CVICYDNDNQSCPCLTGIDPKIQ---LIVTPEVEAMDKK 56
CV+C +D+ S P +DP Q L+VT E A +KK
Sbjct: 185 CVVCRVSDDPSKPQDPNVDPATQIAVLLVTRETIANNKK 223
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 205 LKEGSLSVHVGDGRKGWPEFAPYD---AIHVGAAAPEIPQALIDQLK 248
L E +L+V DG G PE P A GAA P++P+AL+ Q +
Sbjct: 34 LAEDALTVSPADGEPG-PEPEPAQLNGAAEPGAAPPQLPEALLLQRR 79
>pdb|2ADZ|A Chain A, Solution Structure Of The Joined Ph Domain Of Alpha1-
Syntrophin
Length = 178
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 205 LKEGSLSVHVGDGRKGWPEFAPYD---AIHVGAAAPEIPQALIDQ 246
L E +L+V DG G PE P A GAA P++P+AL+ Q
Sbjct: 34 LAEDALTVSPADGEPG-PEPEPAQLNGAAEPGAAPPQLPEALLLQ 77
>pdb|4DCM|A Chain A, Crystal Structure Of Methyltransferase Rlmg Modifying
G1835 Of 23s Rrna In Escherichia Coli
Length = 375
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 40/103 (38%), Gaps = 18/103 (17%)
Query: 117 PPYVDSPMAIGYN--ATISAPHMHATCL-------------QLLEENLKPGMHALDIGSG 161
P D+P + + T H HA Q L ENL+ + +D+G G
Sbjct: 175 PQLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFXQHLPENLEGEI--VDLGCG 232
Query: 162 TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPL 204
G + L PQ + V V+ P V SS N+E + L
Sbjct: 233 NGVIGLTL-LDKNPQAKVVFVDESPXAVASSRLNVETNXPEAL 274
>pdb|3I4K|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|E Chain E, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|F Chain F, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|G Chain G, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
pdb|3I4K|H Chain H, Crystal Structure Of Muconate Lactonizing Enzyme From
Corynebacterium Glutamicum
Length = 383
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 89 QHYGVITSKKVSEVMETIDRACF------VPDGTPP---YVDSPMAIGYNATISAPHMHA 139
+H G++ SKK++ + E AC P GT + S AI Y + P +
Sbjct: 278 KHGGLLESKKIAAIAEAGGLACHGATSLEGPIGTAASLQFAASTKAISYGTELFGPQLLK 337
Query: 140 TCLQLLEENLKPGMHALDIGSGTG 163
+ E K G A+ G G G
Sbjct: 338 DTYIVQEFEYKDGQVAIPQGPGLG 361
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,311,776
Number of Sequences: 62578
Number of extensions: 388382
Number of successful extensions: 1064
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1018
Number of HSP's gapped (non-prelim): 46
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)