Query 022372
Match_columns 298
No_of_seqs 288 out of 2459
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 03:01:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022372.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022372hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2518 Pcm Protein-L-isoaspar 100.0 8.7E-41 1.9E-45 289.1 22.4 199 82-292 4-205 (209)
2 PF01135 PCMT: Protein-L-isoas 100.0 7.8E-41 1.7E-45 293.5 20.7 204 81-292 2-208 (209)
3 KOG1661 Protein-L-isoaspartate 100.0 2.2E-38 4.9E-43 270.7 19.7 227 71-298 1-236 (237)
4 PRK13942 protein-L-isoaspartat 100.0 1.1E-35 2.4E-40 262.1 24.9 205 79-292 4-210 (212)
5 TIGR00080 pimt protein-L-isoas 100.0 1E-34 2.2E-39 256.4 24.9 209 79-296 5-215 (215)
6 PRK13944 protein-L-isoaspartat 100.0 2.3E-34 5.1E-39 252.4 25.0 201 81-289 2-205 (205)
7 PRK00312 pcm protein-L-isoaspa 100.0 1.7E-30 3.6E-35 228.8 24.7 202 79-293 7-211 (212)
8 PRK13943 protein-L-isoaspartat 99.9 5.1E-26 1.1E-30 211.6 23.7 203 80-293 6-218 (322)
9 COG2226 UbiE Methylase involve 99.7 2.5E-16 5.4E-21 140.3 12.0 107 140-255 42-154 (238)
10 PF01209 Ubie_methyltran: ubiE 99.7 1.6E-16 3.4E-21 142.1 10.2 108 140-255 38-151 (233)
11 PF12847 Methyltransf_18: Meth 99.7 7.5E-16 1.6E-20 121.1 12.3 101 151-257 1-111 (112)
12 COG2242 CobL Precorrin-6B meth 99.7 1.8E-15 4E-20 128.9 15.3 122 129-259 14-137 (187)
13 COG2519 GCD14 tRNA(1-methylade 99.6 1E-15 2.2E-20 135.9 8.6 134 126-267 71-205 (256)
14 PF08704 GCD14: tRNA methyltra 99.6 2.9E-15 6.3E-20 134.5 10.7 134 124-264 15-153 (247)
15 TIGR02469 CbiT precorrin-6Y C5 99.6 2.9E-14 6.4E-19 113.5 15.3 115 134-257 4-122 (124)
16 PLN02233 ubiquinone biosynthes 99.6 1.6E-14 3.4E-19 131.3 14.4 111 142-257 66-182 (261)
17 PRK08287 cobalt-precorrin-6Y C 99.6 1.9E-14 4.1E-19 124.2 13.6 118 129-257 11-131 (187)
18 PRK00107 gidB 16S rRNA methylt 99.6 3.8E-14 8.2E-19 122.7 15.3 105 148-260 42-148 (187)
19 TIGR02752 MenG_heptapren 2-hep 99.6 2.8E-14 6E-19 126.8 13.8 111 139-257 35-151 (231)
20 PF13847 Methyltransf_31: Meth 99.6 2.1E-14 4.5E-19 119.7 12.0 103 150-259 2-112 (152)
21 COG2264 PrmA Ribosomal protein 99.6 1.8E-14 4E-19 131.8 12.3 151 94-256 93-262 (300)
22 PLN02244 tocopherol O-methyltr 99.6 3.3E-14 7.2E-19 133.9 14.2 112 137-257 101-223 (340)
23 PRK00377 cbiT cobalt-precorrin 99.6 4E-14 8.6E-19 123.4 13.6 123 130-259 21-147 (198)
24 TIGR00138 gidB 16S rRNA methyl 99.5 5.6E-14 1.2E-18 121.0 12.1 102 151-260 42-145 (181)
25 PF05175 MTS: Methyltransferas 99.5 1.2E-13 2.7E-18 117.5 13.4 112 139-260 21-143 (170)
26 PF08241 Methyltransf_11: Meth 99.5 3.9E-14 8.4E-19 107.1 8.3 89 156-255 1-95 (95)
27 TIGR00406 prmA ribosomal prote 99.5 2.2E-13 4.8E-18 125.5 14.6 125 120-257 132-259 (288)
28 PF02353 CMAS: Mycolic acid cy 99.5 8.5E-14 1.8E-18 127.2 11.5 108 138-257 51-166 (273)
29 PF06325 PrmA: Ribosomal prote 99.5 5.7E-14 1.2E-18 129.3 10.4 123 119-256 133-258 (295)
30 TIGR03533 L3_gln_methyl protei 99.5 1.3E-13 2.7E-18 126.9 12.5 133 121-260 89-254 (284)
31 PRK14103 trans-aconitate 2-met 99.5 1.1E-13 2.3E-18 125.2 11.4 103 139-258 19-127 (255)
32 PRK07402 precorrin-6B methylas 99.5 3.9E-13 8.5E-18 116.9 14.5 123 128-259 19-144 (196)
33 COG2227 UbiG 2-polyprenyl-3-me 99.5 2.1E-14 4.5E-19 126.7 6.0 132 150-291 58-224 (243)
34 PRK15451 tRNA cmo(5)U34 methyl 99.5 2.8E-13 6E-18 122.1 13.0 105 145-256 50-163 (247)
35 PRK11873 arsM arsenite S-adeno 99.5 2.7E-13 5.8E-18 123.6 13.1 102 149-256 75-182 (272)
36 PRK01683 trans-aconitate 2-met 99.5 2.3E-13 4.9E-18 123.0 12.3 107 138-259 20-132 (258)
37 PRK11207 tellurite resistance 99.5 2.7E-13 5.9E-18 118.2 11.9 105 139-255 20-132 (197)
38 COG2230 Cfa Cyclopropane fatty 99.5 3.6E-13 7.8E-18 122.4 12.9 133 139-288 62-203 (283)
39 COG4106 Tam Trans-aconitate me 99.5 6.6E-14 1.4E-18 121.2 7.7 105 141-260 22-132 (257)
40 PLN02781 Probable caffeoyl-CoA 99.5 1.9E-13 4.2E-18 122.3 10.9 112 138-255 56-176 (234)
41 PLN02396 hexaprenyldihydroxybe 99.5 1.3E-13 2.8E-18 128.7 10.1 102 150-259 130-237 (322)
42 PRK00517 prmA ribosomal protei 99.5 6E-13 1.3E-17 120.2 13.5 117 121-256 93-212 (250)
43 PRK11805 N5-glutamine S-adenos 99.5 8.2E-13 1.8E-17 122.8 14.3 133 121-260 101-266 (307)
44 PRK11036 putative S-adenosyl-L 99.5 3.6E-13 7.8E-18 121.8 11.6 102 150-259 43-151 (255)
45 TIGR00446 nop2p NOL1/NOP2/sun 99.5 7.7E-13 1.7E-17 120.5 13.5 105 149-259 69-201 (264)
46 PRK04266 fibrillarin; Provisio 99.5 1.2E-12 2.6E-17 116.6 13.8 114 136-258 56-177 (226)
47 PTZ00098 phosphoethanolamine N 99.4 6.3E-13 1.4E-17 121.0 11.5 108 138-257 41-156 (263)
48 COG4122 Predicted O-methyltran 99.4 1E-12 2.2E-17 115.8 12.0 112 138-255 47-164 (219)
49 TIGR00477 tehB tellurite resis 99.4 9.3E-13 2E-17 114.6 11.8 104 139-255 20-131 (195)
50 PF13659 Methyltransf_26: Meth 99.4 3.1E-13 6.6E-18 107.1 7.8 100 152-258 1-116 (117)
51 PRK15001 SAM-dependent 23S rib 99.4 1.9E-12 4.2E-17 123.1 14.5 112 140-258 219-341 (378)
52 TIGR00740 methyltransferase, p 99.4 2.4E-12 5.2E-17 115.2 14.0 102 149-257 51-161 (239)
53 PF01596 Methyltransf_3: O-met 99.4 3.6E-13 7.9E-18 118.1 8.1 113 137-255 32-153 (205)
54 PLN02476 O-methyltransferase 99.4 1.2E-12 2.5E-17 119.5 11.6 112 138-255 106-226 (278)
55 PRK00121 trmB tRNA (guanine-N( 99.4 1.1E-12 2.3E-17 114.9 10.9 104 150-260 39-159 (202)
56 TIGR00537 hemK_rel_arch HemK-r 99.4 1.5E-12 3.3E-17 111.5 11.5 99 149-259 17-142 (179)
57 PRK10258 biotin biosynthesis p 99.4 1.6E-12 3.6E-17 117.0 12.1 105 138-258 31-141 (251)
58 PRK08317 hypothetical protein; 99.4 3.9E-12 8.4E-17 112.3 14.0 111 139-258 9-125 (241)
59 PRK11088 rrmA 23S rRNA methylt 99.4 3.6E-12 7.8E-17 116.4 13.8 99 150-260 84-184 (272)
60 PLN03075 nicotianamine synthas 99.4 4E-12 8.6E-17 116.7 13.8 114 138-258 112-234 (296)
61 PRK14901 16S rRNA methyltransf 99.4 4E-12 8.7E-17 123.6 14.7 109 142-258 245-385 (434)
62 PF05401 NodS: Nodulation prot 99.4 1.2E-12 2.6E-17 112.7 9.6 95 151-257 43-146 (201)
63 TIGR03534 RF_mod_PrmC protein- 99.4 6.4E-12 1.4E-16 112.6 14.8 101 151-259 87-219 (251)
64 PRK13168 rumA 23S rRNA m(5)U19 99.4 2.3E-12 4.9E-17 125.6 12.4 142 137-293 285-435 (443)
65 PLN02336 phosphoethanolamine N 99.4 3.1E-12 6.7E-17 125.6 13.2 107 140-257 257-369 (475)
66 PRK14966 unknown domain/N5-glu 99.4 1.3E-11 2.8E-16 118.0 17.0 135 117-260 218-384 (423)
67 TIGR00536 hemK_fam HemK family 99.4 5.4E-12 1.2E-16 116.1 13.8 133 121-260 82-247 (284)
68 PRK15068 tRNA mo(5)U34 methylt 99.4 4.3E-12 9.4E-17 118.7 12.7 106 141-256 114-225 (322)
69 PF13649 Methyltransf_25: Meth 99.4 6.8E-13 1.5E-17 103.0 6.0 90 155-251 1-101 (101)
70 TIGR00091 tRNA (guanine-N(7)-) 99.4 3.3E-12 7.1E-17 111.1 10.8 103 151-260 16-135 (194)
71 PRK11705 cyclopropane fatty ac 99.4 7E-12 1.5E-16 119.9 13.8 103 140-258 158-268 (383)
72 PRK14903 16S rRNA methyltransf 99.4 6.8E-12 1.5E-16 121.8 13.8 105 149-259 235-368 (431)
73 PRK14967 putative methyltransf 99.4 1.3E-11 2.8E-16 109.5 14.5 101 149-259 34-161 (223)
74 PRK14904 16S rRNA methyltransf 99.4 8.3E-12 1.8E-16 121.7 14.2 110 141-259 242-379 (445)
75 TIGR01177 conserved hypothetic 99.4 1.4E-11 3.1E-16 115.6 14.8 116 134-260 167-297 (329)
76 KOG1540 Ubiquinone biosynthesi 99.4 7.3E-12 1.6E-16 111.0 11.9 111 141-256 92-213 (296)
77 KOG1270 Methyltransferases [Co 99.4 1.4E-12 3.1E-17 116.0 7.4 99 152-259 90-197 (282)
78 TIGR00452 methyltransferase, p 99.4 7.7E-12 1.7E-16 116.4 12.6 101 149-257 119-225 (314)
79 COG2813 RsmC 16S RNA G1207 met 99.4 1.4E-11 3E-16 112.5 13.8 109 139-258 148-267 (300)
80 smart00828 PKS_MT Methyltransf 99.4 5.6E-12 1.2E-16 111.4 10.9 98 153-257 1-104 (224)
81 PRK09489 rsmC 16S ribosomal RN 99.3 1.5E-11 3.3E-16 115.9 14.2 109 139-259 186-305 (342)
82 TIGR02072 BioC biotin biosynth 99.3 1.2E-11 2.5E-16 109.4 12.7 110 138-258 20-136 (240)
83 PRK00216 ubiE ubiquinone/menaq 99.3 1.9E-11 4.1E-16 108.3 13.8 112 138-256 40-157 (239)
84 PRK01544 bifunctional N5-gluta 99.3 1.5E-11 3.3E-16 121.5 14.5 136 117-259 79-271 (506)
85 PRK09328 N5-glutamine S-adenos 99.3 2.5E-11 5.5E-16 110.4 14.6 129 121-259 77-240 (275)
86 PRK12335 tellurite resistance 99.3 1E-11 2.3E-16 114.3 11.9 94 151-255 120-221 (287)
87 PRK10901 16S rRNA methyltransf 99.3 6.5E-11 1.4E-15 114.9 17.7 108 141-258 236-373 (427)
88 PLN02589 caffeoyl-CoA O-methyl 99.3 9.8E-12 2.1E-16 111.9 11.1 112 138-255 67-188 (247)
89 PRK14968 putative methyltransf 99.3 6.2E-11 1.3E-15 101.4 15.2 111 139-259 13-150 (188)
90 PRK03522 rumB 23S rRNA methylu 99.3 1.8E-11 3.8E-16 114.3 12.5 129 151-293 173-307 (315)
91 PLN02490 MPBQ/MSBQ methyltrans 99.3 1.5E-11 3.3E-16 115.4 12.1 97 150-256 112-214 (340)
92 PRK14902 16S rRNA methyltransf 99.3 2.4E-11 5.2E-16 118.4 13.7 108 142-257 243-379 (444)
93 COG4123 Predicted O-methyltran 99.3 1.3E-11 2.8E-16 110.5 10.7 114 138-258 32-171 (248)
94 PTZ00146 fibrillarin; Provisio 99.3 2.1E-11 4.5E-16 111.7 12.3 102 149-258 130-238 (293)
95 COG2890 HemK Methylase of poly 99.3 3.2E-11 7E-16 110.7 13.6 130 120-259 79-240 (280)
96 TIGR00563 rsmB ribosomal RNA s 99.3 3.5E-11 7.7E-16 116.7 14.2 112 139-258 228-369 (426)
97 PF08242 Methyltransf_12: Meth 99.3 5.9E-13 1.3E-17 102.7 1.4 91 156-253 1-99 (99)
98 TIGR03704 PrmC_rel_meth putati 99.3 6.7E-11 1.5E-15 107.0 14.9 99 152-260 87-219 (251)
99 PF03848 TehB: Tellurite resis 99.3 3E-11 6.5E-16 104.6 11.8 104 139-255 20-131 (192)
100 PRK14121 tRNA (guanine-N(7)-)- 99.3 4.5E-11 9.7E-16 113.6 13.4 112 139-259 112-237 (390)
101 TIGR03840 TMPT_Se_Te thiopurin 99.3 2.8E-11 6.1E-16 106.9 11.2 104 149-255 32-150 (213)
102 PRK04457 spermidine synthase; 99.3 3.9E-11 8.4E-16 109.2 11.9 104 149-258 64-178 (262)
103 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 6.7E-11 1.5E-15 103.7 12.7 108 139-256 29-142 (223)
104 PRK06922 hypothetical protein; 99.3 4.7E-11 1E-15 119.2 12.9 101 149-257 416-537 (677)
105 PF13489 Methyltransf_23: Meth 99.3 1.9E-11 4.1E-16 101.6 8.4 102 140-260 11-118 (161)
106 PRK05785 hypothetical protein; 99.3 7.7E-11 1.7E-15 105.0 12.5 102 140-258 40-147 (226)
107 TIGR02716 C20_methyl_CrtF C-20 99.2 1.2E-10 2.6E-15 108.1 13.9 107 139-256 139-253 (306)
108 TIGR03587 Pse_Me-ase pseudamin 99.2 1E-10 2.2E-15 102.6 12.6 79 148-239 40-118 (204)
109 TIGR00479 rumA 23S rRNA (uraci 99.2 2.1E-11 4.5E-16 118.5 8.8 141 138-293 281-431 (431)
110 PRK11188 rrmJ 23S rRNA methylt 99.2 7.4E-11 1.6E-15 103.9 11.0 94 149-259 49-167 (209)
111 smart00138 MeTrc Methyltransfe 99.2 7.7E-11 1.7E-15 107.4 10.9 108 150-258 98-243 (264)
112 TIGR02021 BchM-ChlM magnesium 99.2 1.5E-10 3.3E-15 102.1 12.5 107 138-255 42-156 (219)
113 TIGR02085 meth_trns_rumB 23S r 99.2 6.9E-11 1.5E-15 112.8 10.6 131 150-294 232-368 (374)
114 PF07021 MetW: Methionine bios 99.2 6.5E-11 1.4E-15 101.7 8.8 98 148-260 10-112 (193)
115 smart00650 rADc Ribosomal RNA 99.2 2.6E-10 5.6E-15 96.9 11.9 106 139-257 3-113 (169)
116 PRK10909 rsmD 16S rRNA m(2)G96 99.2 5.6E-10 1.2E-14 97.5 13.6 114 137-259 40-161 (199)
117 PLN02336 phosphoethanolamine N 99.2 1.5E-10 3.3E-15 113.6 10.9 105 139-256 27-141 (475)
118 PF08003 Methyltransf_9: Prote 99.2 6.2E-10 1.3E-14 101.8 13.4 128 151-291 115-250 (315)
119 KOG2915 tRNA(1-methyladenosine 99.1 4E-10 8.7E-15 100.8 11.6 128 124-258 80-210 (314)
120 PRK00811 spermidine synthase; 99.1 2.7E-10 5.8E-15 104.9 10.8 108 150-259 75-193 (283)
121 TIGR03438 probable methyltrans 99.1 6.2E-10 1.3E-14 103.3 13.3 106 148-258 60-178 (301)
122 TIGR00438 rrmJ cell division p 99.1 3E-10 6.5E-15 98.1 10.5 94 148-258 29-147 (188)
123 PLN02366 spermidine synthase 99.1 5.7E-10 1.2E-14 103.7 12.8 106 150-258 90-207 (308)
124 PRK06202 hypothetical protein; 99.1 4.6E-10 1E-14 100.0 11.6 97 149-255 58-165 (232)
125 PRK13255 thiopurine S-methyltr 99.1 5.7E-10 1.2E-14 98.9 11.1 101 149-255 35-153 (218)
126 KOG1271 Methyltransferases [Ge 99.1 4.5E-10 9.7E-15 95.2 9.6 102 153-260 69-184 (227)
127 PLN02672 methionine S-methyltr 99.1 1.6E-09 3.4E-14 114.3 16.0 140 119-260 84-281 (1082)
128 PRK07580 Mg-protoporphyrin IX 99.1 1.1E-09 2.5E-14 96.8 12.4 90 138-238 49-139 (230)
129 PRK05031 tRNA (uracil-5-)-meth 99.1 2.9E-10 6.3E-15 108.1 8.6 129 152-293 207-354 (362)
130 KOG2904 Predicted methyltransf 99.1 2.5E-09 5.5E-14 95.9 13.8 138 116-259 109-287 (328)
131 PRK05134 bifunctional 3-demeth 99.1 1.2E-09 2.5E-14 97.2 11.9 100 149-258 46-152 (233)
132 KOG4300 Predicted methyltransf 99.1 2.8E-10 6.1E-15 98.2 7.3 96 153-256 78-181 (252)
133 TIGR00417 speE spermidine synt 99.1 7.4E-10 1.6E-14 101.2 10.5 106 151-259 72-188 (270)
134 PHA03412 putative methyltransf 99.1 1.8E-09 3.8E-14 96.1 12.5 93 128-236 30-124 (241)
135 cd02440 AdoMet_MTases S-adenos 99.1 1.9E-09 4.1E-14 81.0 10.6 95 154-256 1-103 (107)
136 TIGR01983 UbiG ubiquinone bios 99.1 9.9E-10 2.1E-14 96.9 10.4 99 151-258 45-150 (224)
137 TIGR02081 metW methionine bios 99.0 1.2E-09 2.5E-14 94.8 9.9 97 148-259 10-111 (194)
138 TIGR02143 trmA_only tRNA (urac 99.0 4.4E-10 9.6E-15 106.5 7.7 128 153-293 199-345 (353)
139 KOG1541 Predicted protein carb 99.0 1.4E-09 3E-14 94.8 9.9 111 133-259 32-162 (270)
140 PRK11933 yebU rRNA (cytosine-C 99.0 3.6E-09 7.9E-14 103.4 14.1 105 149-259 111-244 (470)
141 PRK15128 23S rRNA m(5)C1962 me 99.0 1.3E-09 2.7E-14 104.8 10.7 104 149-258 218-340 (396)
142 KOG1663 O-methyltransferase [S 99.0 3.5E-09 7.6E-14 92.9 11.7 112 138-255 61-181 (237)
143 PRK11783 rlmL 23S rRNA m(2)G24 99.0 1.5E-09 3.3E-14 111.4 10.4 105 149-259 536-658 (702)
144 PLN02585 magnesium protoporphy 99.0 7E-09 1.5E-13 96.7 13.2 96 138-240 130-226 (315)
145 PHA03411 putative methyltransf 99.0 6.8E-09 1.5E-13 94.3 12.4 76 149-237 62-137 (279)
146 PRK13256 thiopurine S-methyltr 99.0 7.9E-09 1.7E-13 91.9 12.4 106 149-257 41-163 (226)
147 PRK00274 ksgA 16S ribosomal RN 99.0 4.7E-09 1E-13 96.0 11.1 91 133-237 26-116 (272)
148 PTZ00338 dimethyladenosine tra 99.0 5.5E-09 1.2E-13 96.6 11.2 98 128-237 14-112 (294)
149 PRK01581 speE spermidine synth 98.9 6.5E-09 1.4E-13 97.9 11.3 107 150-258 149-269 (374)
150 COG2265 TrmA SAM-dependent met 98.9 2.1E-09 4.5E-14 104.1 8.1 145 135-293 279-431 (432)
151 PRK03612 spermidine synthase; 98.9 4.4E-09 9.6E-14 104.5 10.1 108 150-259 296-417 (521)
152 TIGR00755 ksgA dimethyladenosi 98.9 1.5E-08 3.2E-13 91.7 12.3 106 132-252 12-121 (253)
153 PF02390 Methyltransf_4: Putat 98.9 1.1E-08 2.5E-13 89.0 11.0 101 152-259 18-135 (195)
154 COG2263 Predicted RNA methylas 98.9 2.5E-08 5.3E-13 85.3 12.5 95 130-236 23-118 (198)
155 PRK14896 ksgA 16S ribosomal RN 98.9 1.8E-08 3.9E-13 91.4 12.4 91 132-237 12-102 (258)
156 KOG2899 Predicted methyltransf 98.9 7.5E-09 1.6E-13 91.4 9.1 110 143-255 50-207 (288)
157 TIGR00095 RNA methyltransferas 98.8 5E-08 1.1E-12 84.6 12.8 103 150-259 48-161 (189)
158 PF02475 Met_10: Met-10+ like- 98.8 2.2E-08 4.7E-13 87.5 10.4 100 148-254 98-199 (200)
159 PF05724 TPMT: Thiopurine S-me 98.8 1.4E-08 3E-13 90.0 9.4 113 134-252 23-150 (218)
160 COG1041 Predicted DNA modifica 98.8 4.4E-08 9.5E-13 91.3 12.4 113 135-258 183-311 (347)
161 COG0144 Sun tRNA and rRNA cyto 98.8 7.8E-08 1.7E-12 91.2 14.1 106 148-259 153-290 (355)
162 COG2521 Predicted archaeal met 98.8 6.6E-09 1.4E-13 91.3 6.1 111 149-265 132-253 (287)
163 COG3963 Phospholipid N-methylt 98.8 2.7E-08 5.9E-13 83.3 9.4 123 119-255 19-154 (194)
164 PF01170 UPF0020: Putative RNA 98.8 5E-08 1.1E-12 83.9 11.3 117 132-255 11-149 (179)
165 COG4976 Predicted methyltransf 98.8 2.3E-09 5E-14 94.0 2.4 111 133-259 109-227 (287)
166 COG0220 Predicted S-adenosylme 98.8 5.7E-08 1.2E-12 86.4 10.9 100 153-259 50-166 (227)
167 PRK04338 N(2),N(2)-dimethylgua 98.8 6.8E-08 1.5E-12 92.4 12.2 112 138-258 45-159 (382)
168 PLN02823 spermine synthase 98.8 6.9E-08 1.5E-12 90.8 11.6 105 151-258 103-221 (336)
169 COG1092 Predicted SAM-dependen 98.8 5.7E-08 1.2E-12 92.7 11.1 105 149-260 216-339 (393)
170 PRK11727 23S rRNA mA1618 methy 98.8 6.8E-08 1.5E-12 90.2 11.1 81 151-237 114-200 (321)
171 PF03291 Pox_MCEL: mRNA cappin 98.7 5.5E-08 1.2E-12 91.3 10.2 109 151-261 62-190 (331)
172 PF06080 DUF938: Protein of un 98.7 7.1E-08 1.5E-12 84.0 9.7 109 141-255 14-139 (204)
173 KOG3420 Predicted RNA methylas 98.7 3.9E-08 8.3E-13 80.6 6.8 103 125-236 20-124 (185)
174 KOG0820 Ribosomal RNA adenine 98.7 1.2E-07 2.6E-12 85.2 10.5 101 124-236 32-133 (315)
175 PF05958 tRNA_U5-meth_tr: tRNA 98.7 1.3E-08 2.7E-13 96.5 4.5 141 137-293 185-344 (352)
176 KOG3191 Predicted N6-DNA-methy 98.7 3.2E-07 6.9E-12 77.9 11.9 99 152-258 44-169 (209)
177 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.7 1E-07 2.2E-12 87.8 9.2 104 149-258 83-220 (283)
178 PF10294 Methyltransf_16: Puta 98.7 1.9E-07 4.1E-12 79.8 10.1 107 148-259 42-158 (173)
179 PF02527 GidB: rRNA small subu 98.6 5.9E-07 1.3E-11 77.5 12.6 104 149-260 45-151 (184)
180 COG0421 SpeE Spermidine syntha 98.6 3.4E-07 7.4E-12 84.0 11.4 104 153-259 78-192 (282)
181 PF10672 Methyltrans_SAM: S-ad 98.6 9.3E-08 2E-12 87.8 7.7 105 150-260 122-241 (286)
182 PF00891 Methyltransf_2: O-met 98.6 3.8E-07 8.3E-12 81.6 11.2 90 149-255 98-197 (241)
183 KOG1975 mRNA cap methyltransfe 98.6 2.8E-07 6.1E-12 84.6 10.2 111 149-261 115-241 (389)
184 COG0030 KsgA Dimethyladenosine 98.6 5.4E-07 1.2E-11 81.4 11.8 91 134-237 15-106 (259)
185 PRK00050 16S rRNA m(4)C1402 me 98.6 1.2E-07 2.6E-12 87.5 7.4 92 134-235 4-99 (296)
186 PF01564 Spermine_synth: Sperm 98.6 2E-07 4.4E-12 84.1 8.3 107 150-259 75-193 (246)
187 COG2520 Predicted methyltransf 98.6 3.9E-07 8.5E-12 85.4 10.4 103 149-258 186-290 (341)
188 PF03602 Cons_hypoth95: Conser 98.6 1.5E-07 3.2E-12 81.2 6.9 122 132-260 23-156 (183)
189 PF05185 PRMT5: PRMT5 arginine 98.6 3.4E-07 7.3E-12 89.3 9.9 97 152-254 187-294 (448)
190 KOG1499 Protein arginine N-met 98.6 2.8E-07 6.2E-12 85.6 8.9 98 149-254 58-164 (346)
191 KOG3010 Methyltransferase [Gen 98.6 1.3E-07 2.8E-12 83.7 6.3 98 150-255 31-135 (261)
192 TIGR00478 tly hemolysin TlyA f 98.5 4.8E-07 1E-11 80.7 9.9 98 150-258 74-172 (228)
193 PF01269 Fibrillarin: Fibrilla 98.5 1E-06 2.2E-11 77.5 11.6 103 148-258 70-179 (229)
194 PRK00536 speE spermidine synth 98.5 6.9E-07 1.5E-11 81.2 10.9 116 137-260 57-174 (262)
195 PF05219 DREV: DREV methyltran 98.5 5.1E-07 1.1E-11 81.1 9.4 92 151-260 94-191 (265)
196 PRK04148 hypothetical protein; 98.5 1.3E-06 2.8E-11 71.4 10.4 102 140-259 7-112 (134)
197 PF02384 N6_Mtase: N-6 DNA Met 98.5 7.7E-07 1.7E-11 82.6 10.1 125 129-259 26-185 (311)
198 PLN02232 ubiquinone biosynthes 98.5 3.3E-07 7.2E-12 77.2 6.9 75 180-257 1-81 (160)
199 KOG2361 Predicted methyltransf 98.5 3E-07 6.5E-12 81.4 6.4 94 154-255 74-181 (264)
200 KOG1500 Protein arginine N-met 98.4 9.9E-07 2.1E-11 81.5 9.1 131 151-292 177-323 (517)
201 PF09445 Methyltransf_15: RNA 98.4 2.8E-07 6E-12 77.8 4.9 75 154-236 2-79 (163)
202 PF05891 Methyltransf_PK: AdoM 98.4 5.3E-07 1.2E-11 79.1 6.6 137 130-277 28-180 (218)
203 KOG1122 tRNA and rRNA cytosine 98.4 2.7E-06 5.9E-11 80.7 10.8 103 149-258 239-372 (460)
204 COG0742 N6-adenine-specific me 98.4 9.3E-06 2E-10 69.9 13.2 121 132-259 24-156 (187)
205 PRK01544 bifunctional N5-gluta 98.4 2.7E-06 5.9E-11 84.4 11.4 102 151-259 347-464 (506)
206 COG0357 GidB Predicted S-adeno 98.4 3.6E-06 7.8E-11 74.2 10.3 99 152-258 68-169 (215)
207 PRK11783 rlmL 23S rRNA m(2)G24 98.3 1E-05 2.2E-10 83.4 14.5 124 131-260 171-350 (702)
208 TIGR02987 met_A_Alw26 type II 98.3 9.6E-06 2.1E-10 80.9 13.5 103 128-236 3-122 (524)
209 TIGR00308 TRM1 tRNA(guanine-26 98.3 3.4E-06 7.4E-11 80.5 9.7 100 153-258 46-148 (374)
210 PF01739 CheR: CheR methyltran 98.3 2.3E-06 4.9E-11 74.7 7.8 107 151-257 31-175 (196)
211 KOG2187 tRNA uracil-5-methyltr 98.3 2.9E-06 6.2E-11 82.4 9.1 148 134-292 368-532 (534)
212 PRK10611 chemotaxis methyltran 98.3 4.2E-06 9E-11 77.1 9.8 106 152-258 116-263 (287)
213 PF08123 DOT1: Histone methyla 98.2 7.1E-06 1.5E-10 72.0 8.8 119 134-255 27-156 (205)
214 PF00398 RrnaAD: Ribosomal RNA 98.2 1.1E-05 2.3E-10 73.5 9.4 92 132-236 13-107 (262)
215 COG1352 CheR Methylase of chem 98.2 2.4E-05 5.2E-10 71.4 11.5 104 152-255 97-239 (268)
216 PF13578 Methyltransf_24: Meth 98.1 3.6E-07 7.8E-12 71.2 -0.4 94 156-255 1-103 (106)
217 COG0116 Predicted N6-adenine-s 98.1 5.8E-05 1.3E-09 71.5 13.9 126 127-259 169-346 (381)
218 KOG1596 Fibrillarin and relate 98.1 8.3E-06 1.8E-10 72.3 7.5 100 148-259 153-263 (317)
219 PF13679 Methyltransf_32: Meth 98.0 6.7E-05 1.5E-09 61.8 11.1 105 150-258 24-132 (141)
220 COG0293 FtsJ 23S rRNA methylas 98.0 3.6E-05 7.8E-10 67.2 9.7 95 148-259 42-161 (205)
221 PF04816 DUF633: Family of unk 98.0 2.1E-05 4.5E-10 69.1 8.2 95 155-255 1-99 (205)
222 PF03059 NAS: Nicotianamine sy 98.0 6.7E-05 1.4E-09 68.6 11.5 102 153-259 122-232 (276)
223 PF12147 Methyltransf_20: Puta 98.0 0.00018 3.9E-09 65.8 13.5 102 151-257 135-249 (311)
224 COG1889 NOP1 Fibrillarin-like 97.9 0.00011 2.4E-09 63.7 10.8 113 137-258 61-181 (231)
225 PF05148 Methyltransf_8: Hypot 97.9 2.9E-05 6.3E-10 67.8 6.9 94 138-257 60-158 (219)
226 PF01728 FtsJ: FtsJ-like methy 97.9 1.9E-05 4.2E-10 67.4 5.7 92 151-259 23-141 (181)
227 TIGR00006 S-adenosyl-methyltra 97.9 7.6E-05 1.6E-09 69.2 10.0 92 134-235 5-101 (305)
228 COG4076 Predicted RNA methylas 97.9 3.1E-05 6.7E-10 66.4 6.6 92 153-255 34-133 (252)
229 TIGR03439 methyl_EasF probable 97.8 0.00031 6.7E-09 65.8 13.0 105 148-258 73-198 (319)
230 COG4262 Predicted spermidine s 97.8 0.00012 2.5E-09 68.7 9.9 112 149-261 287-411 (508)
231 TIGR01444 fkbM_fam methyltrans 97.8 7E-05 1.5E-09 61.1 7.6 58 154-218 1-58 (143)
232 COG2384 Predicted SAM-dependen 97.8 0.00017 3.8E-09 63.3 10.4 82 148-235 13-94 (226)
233 COG0500 SmtA SAM-dependent met 97.8 0.00042 9.1E-09 54.2 11.8 99 155-260 52-158 (257)
234 PRK10742 putative methyltransf 97.8 8.9E-05 1.9E-09 66.6 8.4 92 141-237 78-175 (250)
235 COG1064 AdhP Zn-dependent alco 97.7 0.00019 4.1E-09 67.4 9.9 97 148-260 163-261 (339)
236 KOG2198 tRNA cytosine-5-methyl 97.7 0.00024 5.2E-09 66.8 10.3 112 141-258 145-297 (375)
237 COG3897 Predicted methyltransf 97.7 9.1E-05 2E-09 63.9 6.3 97 150-260 78-180 (218)
238 PRK11760 putative 23S rRNA C24 97.7 0.00017 3.7E-09 67.6 8.4 86 149-250 209-296 (357)
239 COG4798 Predicted methyltransf 97.6 8.6E-05 1.9E-09 64.0 5.5 103 149-257 46-166 (238)
240 PF03141 Methyltransf_29: Puta 97.6 7.9E-05 1.7E-09 72.5 5.5 91 154-258 120-220 (506)
241 KOG4589 Cell division protein 97.6 0.00054 1.2E-08 58.8 9.3 96 148-260 66-187 (232)
242 KOG1269 SAM-dependent methyltr 97.6 0.00015 3.4E-09 68.8 6.6 105 145-256 104-214 (364)
243 KOG0024 Sorbitol dehydrogenase 97.5 0.00039 8.4E-09 64.4 8.7 97 148-255 166-271 (354)
244 PF05971 Methyltransf_10: Prot 97.5 0.00072 1.6E-08 62.5 10.2 85 152-243 103-194 (299)
245 KOG2940 Predicted methyltransf 97.5 0.00015 3.3E-09 64.1 5.3 110 139-258 60-175 (325)
246 COG1063 Tdh Threonine dehydrog 97.5 0.0013 2.9E-08 62.2 12.0 97 149-255 166-267 (350)
247 KOG3045 Predicted RNA methylas 97.4 0.00064 1.4E-08 61.2 8.1 92 138-257 168-264 (325)
248 KOG1709 Guanidinoacetate methy 97.4 0.0011 2.5E-08 58.1 9.2 157 80-255 26-204 (271)
249 KOG1331 Predicted methyltransf 97.4 0.00016 3.4E-09 65.8 3.9 97 149-262 43-148 (293)
250 PF07942 N2227: N2227-like pro 97.3 0.0024 5.2E-08 58.3 11.2 104 152-259 57-203 (270)
251 PF09243 Rsm22: Mitochondrial 97.3 0.0012 2.7E-08 60.4 9.3 47 152-198 34-80 (274)
252 PF01861 DUF43: Protein of unk 97.3 0.011 2.3E-07 53.0 14.6 115 137-260 30-152 (243)
253 KOG2730 Methylase [General fun 97.3 0.00027 5.8E-09 62.1 4.2 78 151-236 94-175 (263)
254 COG1189 Predicted rRNA methyla 97.3 0.0078 1.7E-07 53.7 13.1 97 150-259 78-180 (245)
255 COG0275 Predicted S-adenosylme 97.2 0.0026 5.6E-08 58.5 9.8 93 134-235 8-105 (314)
256 PF04672 Methyltransf_19: S-ad 97.2 0.006 1.3E-07 55.5 11.5 115 137-259 55-192 (267)
257 COG0286 HsdM Type I restrictio 97.1 0.0071 1.5E-07 60.0 12.8 125 129-260 166-329 (489)
258 PRK09880 L-idonate 5-dehydroge 97.1 0.0021 4.5E-08 60.3 8.4 97 149-255 167-264 (343)
259 PF04989 CmcI: Cephalosporin h 97.1 0.0058 1.3E-07 53.5 10.4 114 133-255 16-145 (206)
260 KOG3987 Uncharacterized conser 97.1 0.00015 3.3E-09 63.1 0.4 108 133-258 93-208 (288)
261 KOG2671 Putative RNA methylase 97.0 0.0019 4.1E-08 60.3 6.8 105 148-259 205-356 (421)
262 KOG1562 Spermidine synthase [A 97.0 0.002 4.4E-08 59.0 6.8 103 150-255 120-234 (337)
263 PF01795 Methyltransf_5: MraW 97.0 0.0013 2.9E-08 61.0 5.8 93 134-236 5-103 (310)
264 PF07091 FmrO: Ribosomal RNA m 97.0 0.004 8.8E-08 55.9 8.5 111 139-259 93-210 (251)
265 PF01234 NNMT_PNMT_TEMT: NNMT/ 96.9 0.003 6.6E-08 57.3 7.3 114 141-257 46-199 (256)
266 PF04445 SAM_MT: Putative SAM- 96.9 0.0028 6E-08 56.7 6.9 86 149-237 71-162 (234)
267 PF06962 rRNA_methylase: Putat 96.9 0.0027 5.8E-08 52.3 6.2 76 178-258 1-93 (140)
268 cd08230 glucose_DH Glucose deh 96.8 0.0065 1.4E-07 57.2 9.2 94 149-255 170-267 (355)
269 KOG3178 Hydroxyindole-O-methyl 96.8 0.0044 9.6E-08 58.1 7.7 90 153-258 179-276 (342)
270 cd08237 ribitol-5-phosphate_DH 96.7 0.01 2.3E-07 55.6 9.5 90 149-255 161-254 (341)
271 PF02005 TRM: N2,N2-dimethylgu 96.7 0.0075 1.6E-07 57.8 8.5 106 150-259 48-156 (377)
272 PRK09424 pntA NAD(P) transhydr 96.5 0.033 7.2E-07 55.4 11.8 94 150-255 163-283 (509)
273 TIGR02822 adh_fam_2 zinc-bindi 96.5 0.03 6.5E-07 52.3 11.0 92 148-258 162-254 (329)
274 TIGR01202 bchC 2-desacetyl-2-h 96.3 0.035 7.6E-07 51.3 10.0 86 150-255 143-229 (308)
275 TIGR03451 mycoS_dep_FDH mycoth 96.2 0.04 8.7E-07 51.9 10.6 97 148-258 173-276 (358)
276 KOG3115 Methyltransferase-like 96.2 0.016 3.5E-07 50.5 7.0 104 153-257 62-183 (249)
277 TIGR03366 HpnZ_proposed putati 96.2 0.052 1.1E-06 49.3 10.7 98 149-255 118-216 (280)
278 KOG4058 Uncharacterized conser 96.2 0.024 5.2E-07 47.1 7.4 107 138-255 61-170 (199)
279 cd08254 hydroxyacyl_CoA_DH 6-h 96.2 0.069 1.5E-06 49.1 11.5 94 148-255 162-261 (338)
280 cd08283 FDH_like_1 Glutathione 96.1 0.052 1.1E-06 51.8 10.7 99 148-256 181-305 (386)
281 KOG2352 Predicted spermine/spe 96.1 0.038 8.3E-07 54.0 9.5 98 149-255 45-159 (482)
282 KOG1501 Arginine N-methyltrans 96.1 0.016 3.5E-07 55.9 6.6 54 154-214 69-122 (636)
283 cd08281 liver_ADH_like1 Zinc-d 96.0 0.098 2.1E-06 49.6 11.9 94 148-255 188-288 (371)
284 cd08239 THR_DH_like L-threonin 96.0 0.064 1.4E-06 49.9 10.4 94 149-255 161-260 (339)
285 PF11599 AviRa: RRNA methyltra 96.0 0.013 2.8E-07 51.6 5.1 105 151-255 51-212 (246)
286 PHA01634 hypothetical protein 95.9 0.053 1.1E-06 44.0 8.1 47 151-199 28-74 (156)
287 KOG3201 Uncharacterized conser 95.9 0.0055 1.2E-07 51.6 2.5 108 151-262 29-145 (201)
288 PF11968 DUF3321: Putative met 95.9 0.0081 1.8E-07 52.9 3.6 82 153-259 53-151 (219)
289 cd05188 MDR Medium chain reduc 95.9 0.1 2.2E-06 46.0 10.9 94 149-256 132-231 (271)
290 PF00107 ADH_zinc_N: Zinc-bind 95.7 0.033 7.1E-07 44.3 6.1 85 161-260 1-91 (130)
291 cd00401 AdoHcyase S-adenosyl-L 95.6 0.075 1.6E-06 51.6 9.5 96 139-255 190-287 (413)
292 COG3129 Predicted SAM-dependen 95.5 0.051 1.1E-06 48.4 7.2 88 151-244 78-171 (292)
293 PLN02740 Alcohol dehydrogenase 95.5 0.033 7.2E-07 53.0 6.7 96 148-258 195-300 (381)
294 PRK10309 galactitol-1-phosphat 95.2 0.17 3.6E-06 47.3 10.3 95 148-255 157-258 (347)
295 TIGR03201 dearomat_had 6-hydro 95.2 0.16 3.6E-06 47.5 10.2 97 148-255 163-270 (349)
296 PRK01747 mnmC bifunctional tRN 95.0 0.082 1.8E-06 54.4 8.1 107 151-257 57-206 (662)
297 cd08285 NADP_ADH NADP(H)-depen 95.0 0.26 5.6E-06 46.0 10.8 95 148-255 163-264 (351)
298 TIGR02825 B4_12hDH leukotriene 95.0 0.39 8.5E-06 44.3 11.8 93 148-255 135-235 (325)
299 PLN02586 probable cinnamyl alc 94.9 0.15 3.2E-06 48.3 9.1 94 149-255 181-276 (360)
300 PRK11524 putative methyltransf 94.9 0.1 2.2E-06 47.9 7.8 47 149-198 206-252 (284)
301 TIGR02818 adh_III_F_hyde S-(hy 94.9 0.39 8.6E-06 45.4 11.9 97 148-255 182-285 (368)
302 PLN02827 Alcohol dehydrogenase 94.9 0.22 4.8E-06 47.5 10.1 96 148-258 190-295 (378)
303 PF01555 N6_N4_Mtase: DNA meth 94.9 0.11 2.3E-06 45.1 7.3 53 136-194 179-231 (231)
304 KOG1227 Putative methyltransfe 94.9 0.02 4.2E-07 52.8 2.7 102 150-259 193-297 (351)
305 cd08277 liver_alcohol_DH_like 94.8 0.15 3.2E-06 48.2 8.7 102 148-255 181-284 (365)
306 KOG1253 tRNA methyltransferase 94.8 0.038 8.3E-07 54.0 4.6 106 149-259 107-218 (525)
307 KOG0023 Alcohol dehydrogenase, 94.7 0.06 1.3E-06 50.2 5.4 98 148-259 178-280 (360)
308 cd08238 sorbose_phosphate_red 94.7 0.4 8.7E-06 46.2 11.5 108 148-258 172-289 (410)
309 PLN03154 putative allyl alcoho 94.6 0.57 1.2E-05 44.1 12.2 95 148-258 155-258 (348)
310 TIGR02819 fdhA_non_GSH formald 94.5 0.41 8.9E-06 46.0 11.1 95 148-255 182-297 (393)
311 TIGR00561 pntA NAD(P) transhyd 94.5 0.2 4.3E-06 49.9 9.0 93 151-255 163-282 (511)
312 KOG2352 Predicted spermine/spe 94.4 0.048 1E-06 53.3 4.3 104 149-259 293-418 (482)
313 cd08255 2-desacetyl-2-hydroxye 94.3 0.33 7.2E-06 43.4 9.6 94 148-255 94-188 (277)
314 COG1062 AdhC Zn-dependent alco 94.3 0.35 7.6E-06 45.5 9.6 112 124-255 164-283 (366)
315 cd08300 alcohol_DH_class_III c 94.3 0.73 1.6E-05 43.5 12.3 95 148-255 183-286 (368)
316 cd08242 MDR_like Medium chain 94.3 0.32 6.9E-06 44.6 9.5 91 148-255 152-243 (319)
317 COG1867 TRM1 N2,N2-dimethylgua 94.2 0.21 4.5E-06 47.4 8.0 101 152-259 53-156 (380)
318 PRK13699 putative methylase; P 94.0 0.25 5.3E-06 44.1 7.9 48 149-199 161-208 (227)
319 COG5459 Predicted rRNA methyla 94.0 0.07 1.5E-06 50.3 4.3 100 153-258 115-226 (484)
320 cd05285 sorbitol_DH Sorbitol d 94.0 0.53 1.2E-05 43.8 10.5 102 148-255 159-263 (343)
321 PLN02514 cinnamyl-alcohol dehy 93.9 0.27 5.9E-06 46.3 8.3 97 149-258 178-275 (357)
322 cd08301 alcohol_DH_plants Plan 93.8 0.86 1.9E-05 43.0 11.6 94 148-255 184-287 (369)
323 cd08231 MDR_TM0436_like Hypoth 93.8 1.2 2.7E-05 41.6 12.5 94 149-255 175-278 (361)
324 cd08232 idonate-5-DH L-idonate 93.8 0.22 4.7E-06 46.2 7.3 95 151-255 165-260 (339)
325 PF07279 DUF1442: Protein of u 93.8 0.75 1.6E-05 40.6 10.1 112 138-255 29-146 (218)
326 cd05278 FDH_like Formaldehyde 93.4 0.84 1.8E-05 42.2 10.7 98 148-255 164-265 (347)
327 cd08296 CAD_like Cinnamyl alco 93.4 0.24 5.2E-06 46.0 6.9 94 148-255 160-257 (333)
328 cd08293 PTGR2 Prostaglandin re 93.3 1.8 3.9E-05 40.1 12.7 93 149-255 150-252 (345)
329 KOG2798 Putative trehalase [Ca 93.3 0.5 1.1E-05 44.0 8.5 50 138-190 131-186 (369)
330 KOG0822 Protein kinase inhibit 93.3 0.36 7.8E-06 47.8 8.0 95 153-254 369-475 (649)
331 cd08294 leukotriene_B4_DH_like 93.2 1.9 4.1E-05 39.5 12.6 92 148-255 140-239 (329)
332 cd00315 Cyt_C5_DNA_methylase C 93.2 0.33 7.1E-06 44.4 7.3 70 154-237 2-73 (275)
333 cd08234 threonine_DH_like L-th 93.1 0.86 1.9E-05 41.9 10.1 95 148-255 156-255 (334)
334 cd08295 double_bond_reductase_ 93.0 1.5 3.3E-05 40.6 11.8 95 148-255 148-249 (338)
335 cd08298 CAD2 Cinnamyl alcohol 93.0 1.3 2.8E-05 40.7 11.1 92 148-258 164-256 (329)
336 cd08261 Zn_ADH7 Alcohol dehydr 92.8 1.1 2.3E-05 41.5 10.3 97 148-255 156-256 (337)
337 cd08278 benzyl_alcohol_DH Benz 92.7 1.2 2.7E-05 41.9 10.9 94 148-255 183-283 (365)
338 COG0604 Qor NADPH:quinone redu 92.7 0.26 5.7E-06 46.2 6.2 97 148-256 139-240 (326)
339 cd08233 butanediol_DH_like (2R 92.7 1.3 2.8E-05 41.3 10.8 98 148-255 169-270 (351)
340 cd05281 TDH Threonine dehydrog 92.6 2.3 5E-05 39.4 12.3 97 149-255 161-260 (341)
341 cd08245 CAD Cinnamyl alcohol d 92.5 1.3 2.8E-05 40.7 10.4 95 148-256 159-255 (330)
342 PLN02178 cinnamyl-alcohol dehy 92.5 0.41 8.8E-06 45.7 7.2 92 150-255 177-271 (375)
343 PF05711 TylF: Macrocin-O-meth 92.4 1.1 2.4E-05 40.5 9.5 99 153-255 76-210 (248)
344 cd08263 Zn_ADH10 Alcohol dehyd 92.1 1.7 3.8E-05 40.8 11.0 95 149-256 185-286 (367)
345 PRK08306 dipicolinate synthase 92.1 1.5 3.2E-05 40.7 10.2 87 151-255 151-239 (296)
346 KOG2793 Putative N2,N2-dimethy 92.1 0.9 2E-05 41.0 8.4 101 151-255 86-197 (248)
347 PTZ00357 methyltransferase; Pr 91.9 1.1 2.4E-05 46.0 9.6 99 154-252 703-830 (1072)
348 cd08286 FDH_like_ADH2 formalde 91.8 3.1 6.8E-05 38.5 12.3 98 148-255 163-264 (345)
349 cd08240 6_hydroxyhexanoate_dh_ 91.6 3.1 6.8E-05 38.6 12.1 93 149-255 173-272 (350)
350 TIGR00692 tdh L-threonine 3-de 91.6 3.1 6.6E-05 38.6 11.9 98 148-255 158-259 (340)
351 PRK10083 putative oxidoreducta 91.6 0.58 1.2E-05 43.3 7.0 98 148-255 157-257 (339)
352 COG1565 Uncharacterized conser 91.4 0.97 2.1E-05 42.9 8.2 76 123-198 39-131 (370)
353 cd08279 Zn_ADH_class_III Class 91.4 3.2 7E-05 38.9 12.0 96 148-256 179-281 (363)
354 cd05279 Zn_ADH1 Liver alcohol 91.3 2 4.3E-05 40.5 10.5 97 148-255 180-283 (365)
355 KOG2651 rRNA adenine N-6-methy 91.3 0.34 7.4E-06 46.2 5.0 42 151-194 153-194 (476)
356 TIGR00936 ahcY adenosylhomocys 91.3 0.66 1.4E-05 45.0 7.1 87 149-255 192-280 (406)
357 PLN02494 adenosylhomocysteinas 91.2 0.96 2.1E-05 44.6 8.2 90 149-259 251-342 (477)
358 PRK05476 S-adenosyl-L-homocyst 91.1 0.68 1.5E-05 45.2 7.1 86 150-255 210-297 (425)
359 PF10354 DUF2431: Domain of un 90.9 1.9 4.2E-05 36.4 8.9 98 157-260 2-128 (166)
360 cd08236 sugar_DH NAD(P)-depend 90.8 2 4.3E-05 39.7 9.8 100 148-255 156-256 (343)
361 TIGR00518 alaDH alanine dehydr 90.7 0.5 1.1E-05 45.2 5.7 93 151-255 166-265 (370)
362 cd05284 arabinose_DH_like D-ar 90.5 2.7 5.8E-05 38.8 10.3 94 149-255 165-264 (340)
363 KOG1099 SAM-dependent methyltr 90.4 0.58 1.3E-05 41.8 5.3 88 153-257 43-163 (294)
364 COG0686 Ald Alanine dehydrogen 90.3 0.77 1.7E-05 42.9 6.3 116 152-279 168-292 (371)
365 KOG0022 Alcohol dehydrogenase, 90.2 2.4 5.3E-05 39.7 9.4 102 139-255 182-292 (375)
366 TIGR00497 hsdM type I restrict 90.1 5.8 0.00013 39.5 12.9 100 133-236 199-303 (501)
367 PF03141 Methyltransf_29: Puta 90.1 0.59 1.3E-05 46.1 5.6 85 153-255 367-465 (506)
368 PF02636 Methyltransf_28: Puta 90.1 0.9 1.9E-05 40.9 6.5 46 153-198 20-72 (252)
369 PF02254 TrkA_N: TrkA-N domain 90.0 1.7 3.7E-05 33.6 7.4 88 160-260 4-99 (116)
370 PLN02702 L-idonate 5-dehydroge 90.0 4.3 9.3E-05 38.1 11.4 97 148-255 178-283 (364)
371 cd08235 iditol_2_DH_like L-idi 89.8 3.6 7.8E-05 38.0 10.6 95 148-256 162-264 (343)
372 KOG3924 Putative protein methy 89.7 0.9 2E-05 43.5 6.4 119 135-256 178-307 (419)
373 cd05283 CAD1 Cinnamyl alcohol 89.7 3.1 6.7E-05 38.6 10.1 93 149-255 167-261 (337)
374 COG1568 Predicted methyltransf 89.6 1.1 2.4E-05 41.2 6.5 78 151-236 152-231 (354)
375 cd08262 Zn_ADH8 Alcohol dehydr 89.3 4.2 9.1E-05 37.5 10.6 95 148-255 158-262 (341)
376 cd08284 FDH_like_2 Glutathione 89.1 4.8 0.0001 37.1 10.9 94 148-255 164-264 (344)
377 PF07757 AdoMet_MTase: Predict 89.0 0.64 1.4E-05 36.6 4.0 45 138-185 43-89 (112)
378 KOG1198 Zinc-binding oxidoredu 88.8 1.2 2.6E-05 42.3 6.6 100 148-258 154-257 (347)
379 PRK09422 ethanol-active dehydr 88.8 4.2 9E-05 37.4 10.2 94 148-255 159-259 (338)
380 PF10237 N6-adenineMlase: Prob 88.7 6.6 0.00014 33.2 10.3 105 138-260 12-126 (162)
381 cd08265 Zn_ADH3 Alcohol dehydr 88.6 3 6.5E-05 39.6 9.3 97 148-255 200-305 (384)
382 cd08287 FDH_like_ADH3 formalde 88.6 5.1 0.00011 37.0 10.7 95 148-255 165-266 (345)
383 cd08256 Zn_ADH2 Alcohol dehydr 88.1 5.1 0.00011 37.2 10.5 95 148-255 171-272 (350)
384 cd08243 quinone_oxidoreductase 88.0 4.1 8.9E-05 36.7 9.5 93 148-255 139-236 (320)
385 cd08269 Zn_ADH9 Alcohol dehydr 88.0 6.5 0.00014 35.4 10.8 94 148-255 126-227 (312)
386 PRK05396 tdh L-threonine 3-deh 87.8 5.5 0.00012 36.8 10.4 95 149-256 161-262 (341)
387 PRK11524 putative methyltransf 87.8 0.54 1.2E-05 43.2 3.5 51 208-258 7-81 (284)
388 KOG1098 Putative SAM-dependent 87.7 0.27 5.9E-06 49.5 1.5 39 148-186 41-79 (780)
389 PF05050 Methyltransf_21: Meth 87.5 1.7 3.8E-05 35.4 6.1 39 157-195 1-42 (167)
390 cd08297 CAD3 Cinnamyl alcohol 87.3 7.5 0.00016 35.8 11.0 95 148-256 162-264 (341)
391 cd08260 Zn_ADH6 Alcohol dehydr 87.3 9.1 0.0002 35.4 11.5 93 148-255 162-262 (345)
392 PRK05786 fabG 3-ketoacyl-(acyl 87.2 8.7 0.00019 33.3 10.8 98 151-257 4-135 (238)
393 COG3510 CmcI Cephalosporin hyd 86.9 3.6 7.8E-05 35.9 7.7 111 132-255 52-178 (237)
394 KOG2539 Mitochondrial/chloropl 86.8 0.62 1.3E-05 45.5 3.4 103 153-257 202-315 (491)
395 COG4627 Uncharacterized protei 86.7 0.13 2.8E-06 43.1 -1.1 52 210-261 31-90 (185)
396 PF05206 TRM13: Methyltransfer 86.6 1.8 4E-05 39.4 6.1 41 149-189 16-60 (259)
397 PTZ00075 Adenosylhomocysteinas 86.2 1.7 3.6E-05 43.0 6.1 89 150-259 252-342 (476)
398 KOG1197 Predicted quinone oxid 86.0 5.3 0.00012 36.5 8.5 101 148-261 143-248 (336)
399 KOG2360 Proliferation-associat 85.9 1.9 4.2E-05 41.2 6.1 82 149-236 211-294 (413)
400 cd08274 MDR9 Medium chain dehy 85.8 7.9 0.00017 35.7 10.3 92 148-255 174-271 (350)
401 cd05286 QOR2 Quinone oxidoredu 85.8 8.9 0.00019 34.2 10.4 93 148-255 133-233 (320)
402 PF06859 Bin3: Bicoid-interact 85.7 0.44 9.5E-06 37.6 1.4 31 226-256 1-43 (110)
403 cd08299 alcohol_DH_class_I_II_ 85.7 12 0.00025 35.5 11.5 97 148-255 187-290 (373)
404 cd08246 crotonyl_coA_red croto 85.6 9.8 0.00021 36.1 11.0 101 148-255 190-313 (393)
405 PRK13771 putative alcohol dehy 85.6 3.3 7.2E-05 38.0 7.6 93 148-255 159-253 (334)
406 cd08291 ETR_like_1 2-enoyl thi 85.6 7.8 0.00017 35.6 10.0 91 151-256 142-241 (324)
407 COG2933 Predicted SAM-dependen 85.4 3.1 6.8E-05 38.0 6.8 72 148-235 208-279 (358)
408 TIGR01470 cysG_Nterm siroheme 85.0 5.2 0.00011 35.0 8.0 91 151-259 8-102 (205)
409 PF11899 DUF3419: Protein of u 84.8 2.9 6.2E-05 40.3 6.8 52 142-198 28-79 (380)
410 PRK05562 precorrin-2 dehydroge 84.8 5.8 0.00013 35.3 8.3 93 151-259 24-118 (223)
411 cd05289 MDR_like_2 alcohol deh 84.0 14 0.0003 32.8 10.8 91 149-255 142-236 (309)
412 PF06460 NSP13: Coronavirus NS 83.6 3.4 7.5E-05 37.6 6.3 94 149-261 59-173 (299)
413 PF11312 DUF3115: Protein of u 83.5 2.5 5.5E-05 39.4 5.6 103 153-255 88-240 (315)
414 TIGR02853 spore_dpaA dipicolin 83.4 5.9 0.00013 36.5 8.1 90 151-258 150-240 (287)
415 PRK06940 short chain dehydroge 83.2 14 0.0003 33.3 10.4 75 153-236 3-86 (275)
416 cd08282 PFDH_like Pseudomonas 82.9 14 0.0003 34.9 10.7 96 148-255 173-283 (375)
417 PRK08324 short chain dehydroge 82.6 7.9 0.00017 40.0 9.5 76 151-235 421-507 (681)
418 TIGR02356 adenyl_thiF thiazole 82.6 7.7 0.00017 33.7 8.1 97 152-255 21-140 (202)
419 COG4301 Uncharacterized conser 82.3 29 0.00063 31.6 11.5 105 149-258 76-194 (321)
420 cd08276 MDR7 Medium chain dehy 82.2 19 0.00042 32.6 11.1 93 148-255 157-257 (336)
421 PF08484 Methyltransf_14: C-me 82.2 4.9 0.00011 33.8 6.5 102 141-258 57-160 (160)
422 cd08292 ETR_like_2 2-enoyl thi 82.1 22 0.00048 32.1 11.5 93 148-255 136-236 (324)
423 cd05288 PGDH Prostaglandin deh 82.1 23 0.00051 32.1 11.7 93 148-255 142-242 (329)
424 cd08244 MDR_enoyl_red Possible 82.0 22 0.00049 32.1 11.5 94 148-256 139-240 (324)
425 PRK07806 short chain dehydroge 81.9 28 0.00062 30.2 11.7 97 152-256 6-133 (248)
426 KOG2782 Putative SAM dependent 81.9 0.91 2E-05 40.3 1.9 93 135-237 29-129 (303)
427 cd08289 MDR_yhfp_like Yhfp put 81.9 8.8 0.00019 34.9 8.7 95 151-256 146-242 (326)
428 PRK06567 putative bifunctional 80.1 12 0.00025 40.5 9.7 34 150-185 381-415 (1028)
429 cd08270 MDR4 Medium chain dehy 79.9 19 0.00041 32.3 10.1 88 151-256 132-221 (305)
430 PRK09496 trkA potassium transp 79.8 18 0.00038 35.1 10.4 88 135-235 214-306 (453)
431 PRK08618 ornithine cyclodeamin 79.5 17 0.00036 34.1 9.8 103 141-260 118-223 (325)
432 PTZ00354 alcohol dehydrogenase 79.3 43 0.00094 30.3 12.4 96 148-255 137-238 (334)
433 cd08241 QOR1 Quinone oxidoredu 79.2 39 0.00085 30.1 12.0 93 148-255 136-236 (323)
434 PF12242 Eno-Rase_NADH_b: NAD( 79.2 7 0.00015 28.8 5.5 36 150-185 37-73 (78)
435 PRK13699 putative methylase; P 78.9 2.4 5.1E-05 37.8 3.6 20 239-258 54-73 (227)
436 cd08258 Zn_ADH4 Alcohol dehydr 78.5 16 0.00035 33.3 9.3 96 148-255 161-262 (306)
437 COG1748 LYS9 Saccharopine dehy 78.0 5.7 0.00012 38.3 6.2 73 153-237 2-79 (389)
438 KOG2078 tRNA modification enzy 77.9 1.8 3.9E-05 42.0 2.7 67 148-221 246-312 (495)
439 PRK05708 2-dehydropantoate 2-r 77.6 18 0.00038 33.5 9.3 99 153-260 3-106 (305)
440 cd05565 PTS_IIB_lactose PTS_II 77.5 4.1 8.9E-05 31.5 4.2 78 154-258 2-79 (99)
441 cd08273 MDR8 Medium chain dehy 77.2 29 0.00064 31.4 10.6 94 148-255 136-231 (331)
442 cd08267 MDR1 Medium chain dehy 77.2 27 0.00058 31.3 10.3 95 148-255 140-238 (319)
443 COG5379 BtaA S-adenosylmethion 76.8 7.7 0.00017 36.1 6.3 52 143-199 57-108 (414)
444 PF02826 2-Hacid_dh_C: D-isome 76.3 2.3 5E-05 36.1 2.8 88 151-259 35-128 (178)
445 COG1255 Uncharacterized protei 76.2 11 0.00025 30.0 6.3 83 153-255 15-100 (129)
446 cd05213 NAD_bind_Glutamyl_tRNA 76.2 17 0.00037 33.7 8.8 95 150-260 176-275 (311)
447 TIGR01751 crot-CoA-red crotony 76.1 30 0.00066 32.9 10.7 102 148-256 186-309 (398)
448 PRK08217 fabG 3-ketoacyl-(acyl 76.1 15 0.00033 31.8 8.1 77 151-235 4-91 (253)
449 PF00145 DNA_methylase: C-5 cy 75.9 3 6.4E-05 38.2 3.6 68 154-236 2-71 (335)
450 cd08248 RTN4I1 Human Reticulon 75.8 7.4 0.00016 35.9 6.3 89 151-255 162-255 (350)
451 TIGR02817 adh_fam_1 zinc-bindi 75.7 27 0.00059 31.9 10.0 91 152-256 149-246 (336)
452 PRK07340 ornithine cyclodeamin 75.5 18 0.00039 33.6 8.7 102 140-259 115-218 (304)
453 COG0863 DNA modification methy 75.2 13 0.00027 33.8 7.5 58 139-199 210-267 (302)
454 cd08250 Mgc45594_like Mgc45594 75.1 56 0.0012 29.6 11.9 92 148-255 136-235 (329)
455 TIGR00675 dcm DNA-methyltransf 75.0 6.5 0.00014 36.7 5.6 68 155-236 1-69 (315)
456 cd08264 Zn_ADH_like2 Alcohol d 74.6 8.6 0.00019 35.1 6.3 91 148-255 159-251 (325)
457 TIGR02823 oxido_YhdH putative 74.5 8.8 0.00019 34.9 6.4 91 149-255 142-239 (323)
458 COG0270 Dcm Site-specific DNA 74.1 24 0.00053 33.0 9.3 74 152-238 3-79 (328)
459 KOG2912 Predicted DNA methylas 74.1 8.6 0.00019 36.1 5.9 75 156-236 107-188 (419)
460 smart00829 PKS_ER Enoylreducta 73.9 16 0.00034 32.0 7.7 98 148-255 101-203 (288)
461 PRK06194 hypothetical protein; 73.9 22 0.00048 31.8 8.8 77 152-236 6-93 (287)
462 PRK06701 short chain dehydroge 73.9 33 0.00072 31.1 10.0 77 151-235 45-133 (290)
463 PRK08265 short chain dehydroge 73.7 33 0.00072 30.3 9.8 73 152-235 6-89 (261)
464 PRK07502 cyclohexadienyl dehyd 73.3 18 0.0004 33.2 8.2 90 153-259 7-101 (307)
465 cd00757 ThiF_MoeB_HesA_family 73.3 16 0.00036 32.2 7.6 99 152-257 21-142 (228)
466 COG4017 Uncharacterized protei 73.3 16 0.00034 32.0 7.0 84 149-253 42-126 (254)
467 PRK05854 short chain dehydroge 73.2 31 0.00067 31.7 9.7 78 152-235 14-102 (313)
468 cd08252 AL_MDR Arginate lyase 73.0 44 0.00095 30.4 10.7 91 152-255 150-246 (336)
469 cd08290 ETR 2-enoyl thioester 73.0 25 0.00055 32.2 9.1 93 148-256 143-250 (341)
470 PRK10754 quinone oxidoreductas 72.7 42 0.00091 30.5 10.5 93 148-255 137-237 (327)
471 PF03269 DUF268: Caenorhabditi 72.7 2.8 6.2E-05 35.4 2.3 94 152-260 2-114 (177)
472 cd05564 PTS_IIB_chitobiose_lic 72.6 8.1 0.00018 29.4 4.7 76 158-259 4-79 (96)
473 cd01483 E1_enzyme_family Super 72.4 15 0.00033 29.6 6.6 100 154-260 1-123 (143)
474 PRK07097 gluconate 5-dehydroge 72.1 30 0.00066 30.6 9.1 78 151-236 9-97 (265)
475 cd05280 MDR_yhdh_yhfp Yhdh and 71.9 22 0.00049 32.1 8.4 88 152-255 147-241 (325)
476 COG2961 ComJ Protein involved 71.5 36 0.00078 31.0 9.1 108 135-255 74-193 (279)
477 PF06690 DUF1188: Protein of u 71.4 35 0.00076 30.7 8.9 83 152-255 42-124 (252)
478 PRK12475 thiamine/molybdopteri 71.2 20 0.00043 33.9 8.0 79 152-237 24-127 (338)
479 PRK06249 2-dehydropantoate 2-r 70.9 14 0.0003 34.2 6.8 98 152-259 5-107 (313)
480 TIGR00853 pts-lac PTS system, 70.5 9.4 0.0002 29.1 4.6 80 153-259 4-83 (95)
481 PRK07478 short chain dehydroge 70.3 35 0.00076 29.9 9.1 77 152-236 6-93 (254)
482 KOG2920 Predicted methyltransf 70.1 3.3 7.2E-05 38.0 2.3 39 149-189 114-152 (282)
483 cd05195 enoyl_red enoyl reduct 69.0 20 0.00044 31.2 7.2 98 148-255 105-207 (293)
484 PF03686 UPF0146: Uncharacteri 69.0 14 0.00031 29.9 5.5 88 152-259 14-105 (127)
485 PRK15116 sulfur acceptor prote 68.9 43 0.00094 30.6 9.4 32 152-185 30-63 (268)
486 PRK06125 short chain dehydroge 68.7 37 0.00081 29.8 8.9 78 151-235 6-90 (259)
487 COG0287 TyrA Prephenate dehydr 68.6 27 0.00058 32.1 8.0 86 153-253 4-94 (279)
488 PRK06172 short chain dehydroge 68.5 34 0.00075 29.8 8.6 78 151-236 6-94 (253)
489 PRK08945 putative oxoacyl-(acy 68.4 24 0.00052 30.8 7.5 80 149-235 9-101 (247)
490 PRK08703 short chain dehydroge 68.4 37 0.00081 29.4 8.7 46 152-198 6-52 (239)
491 cd01075 NAD_bind_Leu_Phe_Val_D 68.0 9.9 0.00021 33.0 4.8 43 151-195 27-70 (200)
492 PF01488 Shikimate_DH: Shikima 68.0 19 0.00041 29.0 6.2 95 151-257 11-108 (135)
493 PRK08340 glucose-1-dehydrogena 67.9 33 0.00071 30.2 8.4 73 154-235 2-85 (259)
494 PF01408 GFO_IDH_MocA: Oxidore 67.8 16 0.00035 28.1 5.7 87 154-255 2-91 (120)
495 PRK07109 short chain dehydroge 67.8 36 0.00078 31.7 9.0 78 151-236 7-95 (334)
496 PRK03562 glutathione-regulated 67.7 49 0.0011 34.0 10.5 92 153-259 401-500 (621)
497 PRK15001 SAM-dependent 23S rib 67.5 46 0.001 32.0 9.7 102 138-255 32-140 (378)
498 PRK06139 short chain dehydroge 67.5 34 0.00073 32.0 8.7 77 151-235 6-93 (330)
499 cd01487 E1_ThiF_like E1_ThiF_l 67.5 36 0.00078 28.8 8.1 31 154-186 1-33 (174)
500 COG0569 TrkA K+ transport syst 66.6 34 0.00074 30.2 8.1 70 153-235 1-75 (225)
No 1
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.7e-41 Score=289.09 Aligned_cols=199 Identities=48% Similarity=0.783 Sum_probs=188.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEc
Q 022372 82 KAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIG 159 (298)
Q Consensus 82 ~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG 159 (298)
..|+++|+..|+ .++++.+||..|||+.|+|+. ..+|.|.++++++|+++++|+++++|++.|. ++++++|||||
T Consensus 4 ~~l~~~lr~~~i-~~~~v~~A~~~vPRe~FVp~~~~~~AY~d~~lpi~~gqtis~P~~vA~m~~~L~--~~~g~~VLEIG 80 (209)
T COG2518 4 RMLVERLRTEGI-TDERVLKAFLAVPRELFVPAAYKHLAYEDRALPIGCGQTISAPHMVARMLQLLE--LKPGDRVLEIG 80 (209)
T ss_pred HHHHHHHHHcCC-CcHHHHHHHHhCCHHhccCchhhcccccCCcccCCCCceecCcHHHHHHHHHhC--CCCCCeEEEEC
Confidence 568899999995 779999999999999999988 8999999999999999999999999999998 99999999999
Q ss_pred CCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCchh
Q 022372 160 SGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPEI 239 (298)
Q Consensus 160 ~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~l 239 (298)
||+||.++.||+.. ++|+++|+.+++.+.|++|+...+. .||.++++|+..++++.++||+|+++++.+.+
T Consensus 81 tGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~------~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~~v 151 (209)
T COG2518 81 TGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGY------ENVTVRHGDGSKGWPEEAPYDRIIVTAAAPEV 151 (209)
T ss_pred CCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCC------CceEEEECCcccCCCCCCCcCEEEEeeccCCC
Confidence 99999999999998 5999999999999999999988554 68999999999999999999999999999999
Q ss_pred HHHHHhccccCcEEEEEEC-CCceeEEEEEEcCCCCeEEEEeeeEEEeecccch
Q 022372 240 PQALIDQLKPGGRMVIPVG-NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 292 (298)
Q Consensus 240 ~~~l~~~LkpGG~Lvi~v~-~~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~ 292 (298)
|+.+.++||+||+|++|++ ...|.+..++|.+++.+.++.+++|+|+||..+.
T Consensus 152 P~~Ll~QL~~gGrlv~PvG~~~~q~l~~~~k~~~~~~~~~~l~~v~~vPl~~~~ 205 (209)
T COG2518 152 PEALLDQLKPGGRLVIPVGSGPAQRLLRITKDGDGNFERRDLFNVRFVPLVGGD 205 (209)
T ss_pred CHHHHHhcccCCEEEEEEccCCcEEEEEEEEcCCCcEEEeeeccceeeecCCcc
Confidence 9999999999999999999 5679999999998989999999999999998843
No 2
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=100.00 E-value=7.8e-41 Score=293.50 Aligned_cols=204 Identities=46% Similarity=0.748 Sum_probs=178.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEE
Q 022372 81 NKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDI 158 (298)
Q Consensus 81 ~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDi 158 (298)
|++||++|++.|.++++++.+||++|||+.|+|+. ..+|.|.++++++++++++|++++++++.|. +++|++||||
T Consensus 2 ~~~lv~~l~~~g~v~~~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~--l~pg~~VLeI 79 (209)
T PF01135_consen 2 NKALVDNLIRPGDVTDPRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALD--LKPGDRVLEI 79 (209)
T ss_dssp HHHHHHHHHHTTSS-SHHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTT--C-TT-EEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHh--cCCCCEEEEe
Confidence 78999999999988999999999999999999996 7999999999999999999999999999998 9999999999
Q ss_pred cCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCch
Q 022372 159 GSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE 238 (298)
Q Consensus 159 G~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~ 238 (298)
|||+||.++.+++++++.++|+++|+++++++.|++++...+. .|+.++++|+..++++.++||+|+++++.++
T Consensus 80 GtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~------~nv~~~~gdg~~g~~~~apfD~I~v~~a~~~ 153 (209)
T PF01135_consen 80 GTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI------DNVEVVVGDGSEGWPEEAPFDRIIVTAAVPE 153 (209)
T ss_dssp S-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT------HSEEEEES-GGGTTGGG-SEEEEEESSBBSS
T ss_pred cCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc------CceeEEEcchhhccccCCCcCEEEEeeccch
Confidence 9999999999999998888999999999999999999998665 6999999999999988889999999999999
Q ss_pred hHHHHHhccccCcEEEEEECC-CceeEEEEEEcCCCCeEEEEeeeEEEeecccch
Q 022372 239 IPQALIDQLKPGGRMVIPVGN-IFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 292 (298)
Q Consensus 239 l~~~l~~~LkpGG~Lvi~v~~-~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~ 292 (298)
+|..+.++||+||+||+|++. ..|.+..++|..+|.++.+.+++|+||||+...
T Consensus 154 ip~~l~~qL~~gGrLV~pi~~~~~~~l~~~~k~~~g~~~~~~~~~~~fvpl~~~~ 208 (209)
T PF01135_consen 154 IPEALLEQLKPGGRLVAPIGQGGSQRLVRITKKGDGEFSREELFPVRFVPLVGGE 208 (209)
T ss_dssp --HHHHHTEEEEEEEEEEESSSSSEEEEEEEEETTTEEEEEEEEEE---B-BSCC
T ss_pred HHHHHHHhcCCCcEEEEEEccCCceEEEEEEEeCCCcEEEEEEeeEEEEeccCCC
Confidence 999999999999999999994 568999999998899999999999999998763
No 3
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-38 Score=270.68 Aligned_cols=227 Identities=54% Similarity=0.928 Sum_probs=209.6
Q ss_pred hcccCCccchHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHcc
Q 022372 71 RSWSGSGVNKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEEN 148 (298)
Q Consensus 71 ~~~~~~~~~~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~ 148 (298)
|+|...+ ++|++++++|++.++|...++.+||++++|..|.|.. ..+|.|.|+.+|++.++++|++++.+++.|..+
T Consensus 1 m~~~s~g-s~n~~LId~L~~~~~Ir~~~v~~A~~a~dR~dy~p~~~~~n~y~d~pq~~G~n~~iSAp~mha~~le~L~~~ 79 (237)
T KOG1661|consen 1 MGWVSSG-SDNDDLIDNLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQKIGYNLTISAPHMHATALEYLDDH 79 (237)
T ss_pred CCccccC-cchHHHHHHHHhcchhHHHHHHHHHHhhchhhccccccccCCCCCCccccCCceEEcchHHHHHHHHHHHHh
Confidence 4576665 7899999999999999999999999999999999986 689999999999999999999999999999999
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcE-EEEEeCCHHHHHHHHHHHHHhcc----CCccCCCCEEEEEcCCCCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAA----APLLKEGSLSVHVGDGRKGWPE 223 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~-V~giD~s~~~l~~A~~~~~~~~~----~~~l~~~~v~~~~gD~~~~~~~ 223 (298)
++||.+.||+|+||||++.+++.+++..+. ++|||..+++++.+++|+.++-. ...+...++.++.||++.++++
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 999999999999999999999999877665 49999999999999999987652 2335568899999999999999
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEEEEC--CCceeEEEEEEcCCCCeEEEEeeeEEEeecccchhhhcCC
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 298 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~--~~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~~~~~~ 298 (298)
.++||+|+++++..++++++..+|++||++++|++ ...|.++.+++..+|++....+|.|+|||||+...|+.+|
T Consensus 160 ~a~YDaIhvGAaa~~~pq~l~dqL~~gGrllip~~~~~~~q~~~~~dk~~~gki~~~~~f~v~yvPlt~~~~q~~~~ 236 (237)
T KOG1661|consen 160 QAPYDAIHVGAAASELPQELLDQLKPGGRLLIPVGQDGGTQYLRQIDKNEDGKIKLRTLFSVRYVPLTSRESQPSRF 236 (237)
T ss_pred cCCcceEEEccCccccHHHHHHhhccCCeEEEeecccCceeEEEeecccccCceeeeEeeceEEEeccccccccCCC
Confidence 99999999999999999999999999999999999 4579999999999999999999999999999999999876
No 4
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=100.00 E-value=1.1e-35 Score=262.14 Aligned_cols=205 Identities=44% Similarity=0.705 Sum_probs=188.7
Q ss_pred chHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEE
Q 022372 79 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHAL 156 (298)
Q Consensus 79 ~~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VL 156 (298)
..+++||++|.+.|.++|+++.+||+.|||+.|+|+. ..+|.|.++++++|+++++|++.+.+++.+. ++++++||
T Consensus 4 ~~~~~~v~~l~~~~~v~~~~v~~a~~~v~R~~fvp~~~~~~ay~d~~~~~~~g~~~~~p~~~~~~~~~l~--~~~g~~VL 81 (212)
T PRK13942 4 EEKRRVIEELIREGYIKSKKVIDALLKVPRHLFVPEYLEEYAYVDTPLEIGYGQTISAIHMVAIMCELLD--LKEGMKVL 81 (212)
T ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHcCCHhhcCCchhhhcCcCCCCccCCCCCEeCcHHHHHHHHHHcC--CCCcCEEE
Confidence 3568999999999989999999999999999999997 6899999999999999999999999999997 88999999
Q ss_pred EEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 157 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 157 DiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
|+|||+|+.+..+++.+++.++|+++|+++++++.|+++++..+. .+++++.+|+...+++.++||+|+++...
T Consensus 82 dIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~------~~v~~~~gd~~~~~~~~~~fD~I~~~~~~ 155 (212)
T PRK13942 82 EIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY------DNVEVIVGDGTLGYEENAPYDRIYVTAAG 155 (212)
T ss_pred EECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CCeEEEECCcccCCCcCCCcCEEEECCCc
Confidence 999999999999999987778999999999999999999987553 68999999998877766899999999999
Q ss_pred chhHHHHHhccccCcEEEEEECCCceeEEEEEEcCCCCeEEEEeeeEEEeecccch
Q 022372 237 PEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 292 (298)
Q Consensus 237 ~~l~~~l~~~LkpGG~Lvi~v~~~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~ 292 (298)
+++++.+.++|||||+++++++...|.+..+++.. +.+..+.+++++|+||+++.
T Consensus 156 ~~~~~~l~~~LkpgG~lvi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~f~~~~~~~ 210 (212)
T PRK13942 156 PDIPKPLIEQLKDGGIMVIPVGSYSQELIRVEKDN-GKIIKKKLGEVAFVPLIGKN 210 (212)
T ss_pred ccchHHHHHhhCCCcEEEEEEcCCCcEEEEEEEEC-CEEEEEEeccEEEEecccCC
Confidence 99999999999999999999998778888888864 77999999999999998763
No 5
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=100.00 E-value=1e-34 Score=256.36 Aligned_cols=209 Identities=45% Similarity=0.752 Sum_probs=190.7
Q ss_pred chHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEE
Q 022372 79 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHAL 156 (298)
Q Consensus 79 ~~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VL 156 (298)
+.|++||++|.+.|.+.++++.+||++|||+.|+|+. ..+|.|.+++++.+++++.|.+++.+++.+. ++++.+||
T Consensus 5 ~~~~~~v~~~~~~~~v~~~~v~~a~~~v~R~~f~~~~~~~~~y~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VL 82 (215)
T TIGR00080 5 SQKKALIDKLINEGYIKSKRVIDALLSVPREEFVPEHFKEYAYVDTPLEIGYGQTISAPHMVAMMTELLE--LKPGMKVL 82 (215)
T ss_pred HHHHHHHHHHHhcCCcCCHHHHHHHHhCChhhhCCchhHhhCcCCCCcccCCCCEechHHHHHHHHHHhC--CCCcCEEE
Confidence 5689999999999988999999999999999999986 6899999999999999999999999999997 88999999
Q ss_pred EEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 157 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 157 DiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
|+|||+|+.+..+++..+++++|+++|+++++++.|++++.+.+. ++++++.+|+.+.++..++||+|+++.+.
T Consensus 83 DiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~------~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 83 EIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL------DNVIVIVGDGTQGWEPLAPYDRIYVTAAG 156 (215)
T ss_pred EECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC------CCeEEEECCcccCCcccCCCCEEEEcCCc
Confidence 999999999999999976667899999999999999999988654 68999999998776655789999999999
Q ss_pred chhHHHHHhccccCcEEEEEECCCceeEEEEEEcCCCCeEEEEeeeEEEeecccchhhhc
Q 022372 237 PEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLR 296 (298)
Q Consensus 237 ~~l~~~l~~~LkpGG~Lvi~v~~~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~~~~ 296 (298)
+++++.+.++|||||+++++++...+.+..+++. ++.|..+.+++|+|+||+.+.+|++
T Consensus 157 ~~~~~~~~~~L~~gG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~pl~~~~~~~~ 215 (215)
T TIGR00080 157 PKIPEALIDQLKEGGILVMPVGEYLQVLKRAEKR-GGEIIIKDVEPVAFVPLVGGEGFQG 215 (215)
T ss_pred ccccHHHHHhcCcCcEEEEEEcCCceEEEEEEEe-CCEEEEEEeeeEEEEeCCCCccCCC
Confidence 9999999999999999999999877888888775 5679999999999999999887753
No 6
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=100.00 E-value=2.3e-34 Score=252.41 Aligned_cols=201 Identities=41% Similarity=0.575 Sum_probs=181.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEE
Q 022372 81 NKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDI 158 (298)
Q Consensus 81 ~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDi 158 (298)
++.||++|++.|.+++++|.+||++|||+.|+|+. ..+|.|.+++++.+++++.|++.+.+++.+. ++++++|||+
T Consensus 2 ~~~lv~~~~~~~~v~~~~v~~a~~~vpR~~fv~~~~~~~ay~d~~~~~~~~~~~~~p~~~~~~~~~l~--~~~~~~VLDi 79 (205)
T PRK13944 2 AKRLVEELVREGIIKSERVKKAMLSVPREEFVMPEYRMMAYEDRPLPLFAGATISAPHMVAMMCELIE--PRPGMKILEV 79 (205)
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHhCCHhHcCChhHHhcCccCCCcccCCCCEechHHHHHHHHHhcC--CCCCCEEEEE
Confidence 56899999999988999999999999999999987 6899999999999999999999999999987 7889999999
Q ss_pred cCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCch
Q 022372 159 GSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE 238 (298)
Q Consensus 159 G~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~ 238 (298)
|||+|+.+..+++.+++.++|+++|+++++++.|++++...+.. .+++++.+|+.+.++..++||+|+++.+.++
T Consensus 80 G~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~-----~~v~~~~~d~~~~~~~~~~fD~Ii~~~~~~~ 154 (205)
T PRK13944 80 GTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYW-----GVVEVYHGDGKRGLEKHAPFDAIIVTAAAST 154 (205)
T ss_pred CcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEEECCcccCCccCCCccEEEEccCcch
Confidence 99999999999998766679999999999999999999876543 4699999999887766679999999999999
Q ss_pred hHHHHHhccccCcEEEEEECCC-ceeEEEEEEcCCCCeEEEEeeeEEEeecc
Q 022372 239 IPQALIDQLKPGGRMVIPVGNI-FQDLKVVDKNQDGSLSIWSETSVRYVPLT 289 (298)
Q Consensus 239 l~~~l~~~LkpGG~Lvi~v~~~-~q~~~~~~~~~~g~~~~~~l~~v~fvPl~ 289 (298)
+++++.++|||||+|++|++.. .|.+..++|. ++.++.+.+++|+||||.
T Consensus 155 ~~~~l~~~L~~gG~lvi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~pl~ 205 (205)
T PRK13944 155 IPSALVRQLKDGGVLVIPVEEGVGQVLYKVVKR-GEKVEKRAITYVLFVPLR 205 (205)
T ss_pred hhHHHHHhcCcCcEEEEEEcCCCceEEEEEEEe-CCEEEEEEeceEEEEecC
Confidence 9999999999999999999874 4677888886 456999999999999984
No 7
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.98 E-value=1.7e-30 Score=228.78 Aligned_cols=202 Identities=41% Similarity=0.650 Sum_probs=181.3
Q ss_pred chHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC--CCCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEE
Q 022372 79 NKNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG--TPPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHAL 156 (298)
Q Consensus 79 ~~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~--~~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VL 156 (298)
+.|++|+++|+..| +.++++.+||+.+||+.|+|+. ..+|.|.+++++.++++++|.+.+.+++.+. ++++.+||
T Consensus 7 ~~~~~~v~~l~~~~-~~~~~~~~a~~~~~r~~f~p~~~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~--~~~~~~VL 83 (212)
T PRK00312 7 ERFARLVLRLRAEG-ILDERVLEAIEATPRELFVPEAFKHKAYENRALPIGCGQTISQPYMVARMTELLE--LKPGDRVL 83 (212)
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHcCCHhHcCCchHHhcCccCCCccCCCCCeeCcHHHHHHHHHhcC--CCCCCEEE
Confidence 56899999999999 6899999999999999999965 7899999999999999999999999999886 88899999
Q ss_pred EEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 157 DIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 157 DiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
|+|||+|+.+..+++.. .+|+++|+++++++.|++++.+.+. .++++..+|..+.++..++||+|+++...
T Consensus 84 eiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~------~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 84 EIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGL------HNVSVRHGDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred EECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCC------CceEEEECCcccCCCcCCCcCEEEEccCc
Confidence 99999999999988875 4899999999999999999987654 57999999987776655789999999999
Q ss_pred chhHHHHHhccccCcEEEEEEC-CCceeEEEEEEcCCCCeEEEEeeeEEEeecccchh
Q 022372 237 PEIPQALIDQLKPGGRMVIPVG-NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293 (298)
Q Consensus 237 ~~l~~~l~~~LkpGG~Lvi~v~-~~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~ 293 (298)
+++++.+.++|+|||+++++++ +..+.+..+++ .++.+..+.+++++|+|++++.+
T Consensus 155 ~~~~~~l~~~L~~gG~lv~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~ 211 (212)
T PRK00312 155 PEIPRALLEQLKEGGILVAPVGGEEQQLLTRVRK-RGGRFEREVLEEVRFVPLVKGEL 211 (212)
T ss_pred hhhhHHHHHhcCCCcEEEEEEcCCCceEEEEEEE-cCCeEEEEEEccEEEEecCCCCC
Confidence 9999999999999999999998 34566777777 46779999999999999998764
No 8
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.95 E-value=5.1e-26 Score=211.65 Aligned_cols=203 Identities=28% Similarity=0.450 Sum_probs=172.7
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCCCC---CCCCCCCCccc-cCC---CccChHHHHHHHHHHHHccCCCC
Q 022372 80 KNKAMVEHLQHYGVITSKKVSEVMETIDRACFVPDG---TPPYVDSPMAI-GYN---ATISAPHMHATCLQLLEENLKPG 152 (298)
Q Consensus 80 ~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p~~---~~aY~d~~~~~-g~~---~~is~p~~~~~~l~~L~~~l~~g 152 (298)
.++.|+++|+..| +++ ++.+||.+|||+.|+|+. ..+|.|.++++ ..+ +++++|.+.+++++.+. ++++
T Consensus 6 ~~~~lv~~l~~~g-v~d-~vl~a~~~vpRe~Fvp~~~~~~~aY~D~~l~~~~~g~~~~~~~~p~l~a~ll~~L~--i~~g 81 (322)
T PRK13943 6 MREKLFWILKKYG-ISD-HIAKAFLEVPREEFLTKSYPLSYVYEDIVLVSYDDGEEYSTSSQPSLMALFMEWVG--LDKG 81 (322)
T ss_pred HHHHHHHHHHHcC-CcH-HHHHHHHcCCHHHcCCcchhhhhccCCCcccccCCCcccccCCcHHHHHHHHHhcC--CCCC
Confidence 4678999999999 577 999999999999999985 46799999875 444 57889999999999887 8889
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 232 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~ 232 (298)
++|||+|||+|+.+..+++..+..++|+++|+++++++.|+++++..+. .++.++.+|+...+++.++||+|++
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~------~nV~~i~gD~~~~~~~~~~fD~Ii~ 155 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI------ENVIFVCGDGYYGVPEFAPYDVIFV 155 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEeCChhhcccccCCccEEEE
Confidence 9999999999999999999876556899999999999999999987554 6899999998877665578999999
Q ss_pred CCCCchhHHHHHhccccCcEEEEEECCC---ceeEEEEEEcCCCCeEEEEeeeEEEeecccchh
Q 022372 233 GAAAPEIPQALIDQLKPGGRMVIPVGNI---FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293 (298)
Q Consensus 233 ~~~~~~l~~~l~~~LkpGG~Lvi~v~~~---~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~ 293 (298)
+.+.++++..+.++|+|||+++++++.. .+....+++. .+.++....+.++|+|.....+
T Consensus 156 ~~g~~~ip~~~~~~LkpgG~Lvv~~~~~l~~~~~~~~~~r~-~~~~~~~~~~~~~~l~~~G~lg 218 (322)
T PRK13943 156 TVGVDEVPETWFTQLKEGGRVIVPINLKLSRRQPAFLFKKK-DPYLVGNYKLETRFIKAGGNLG 218 (322)
T ss_pred CCchHHhHHHHHHhcCCCCEEEEEeCCccCCCCceEEEEec-CCCceEEEEEEeeEEcccchHH
Confidence 9999999999999999999999988653 3555566665 4558888889999999965544
No 9
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=2.5e-16 Score=140.34 Aligned_cols=107 Identities=26% Similarity=0.453 Sum_probs=93.3
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+.+.+. .++|.+|||+|||||..+..+++..+ .++|+++|+|+.|++.|+++....+. .+++++++|+..
T Consensus 42 ~~i~~~~--~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~------~~i~fv~~dAe~ 112 (238)
T COG2226 42 ALISLLG--IKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGV------QNVEFVVGDAEN 112 (238)
T ss_pred HHHHhhC--CCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCc------cceEEEEechhh
Confidence 3445444 55899999999999999999999987 68999999999999999999987554 359999999999
Q ss_pred CCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi 255 (298)
.+.++++||++.+..+++. ..+++.|+|||||++++
T Consensus 113 LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~v 154 (238)
T COG2226 113 LPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLV 154 (238)
T ss_pred CCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEE
Confidence 8888899999999998864 44899999999999887
No 10
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.68 E-value=1.6e-16 Score=142.09 Aligned_cols=108 Identities=31% Similarity=0.527 Sum_probs=80.4
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+++.+. ..+|.+|||+|||+|..+..+++..++.++|+++|++++|++.|+++....+. .+++++++|+.+
T Consensus 38 ~~~~~~~--~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~------~~i~~v~~da~~ 109 (233)
T PF01209_consen 38 KLIKLLG--LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL------QNIEFVQGDAED 109 (233)
T ss_dssp HHHHHHT----S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--------SEEEEE-BTTB
T ss_pred HHHhccC--CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC------CCeeEEEcCHHH
Confidence 4555554 78889999999999999999999888888999999999999999999987554 599999999998
Q ss_pred CCCCCCCccEEEECCCCchhH------HHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~------~~l~~~LkpGG~Lvi 255 (298)
.+.++++||+|++..+++.++ ++++++|||||++++
T Consensus 110 lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~i 151 (233)
T PF01209_consen 110 LPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVI 151 (233)
T ss_dssp --S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEE
T ss_pred hcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEE
Confidence 777779999999999886543 789999999999987
No 11
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.67 E-value=7.5e-16 Score=121.13 Aligned_cols=101 Identities=29% Similarity=0.505 Sum_probs=82.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
|+.+|||+|||+|..+..+++.. +..+|+|+|+++++++.|+++..+.+.. ++++++++|........++||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~~i~~~~~d~~~~~~~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLS-----DRITFVQGDAEFDPDFLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTT-----TTEEEEESCCHGGTTTSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC-----CCeEEEECccccCcccCCCCCEE
Confidence 57899999999999999999963 5589999999999999999999665543 79999999992122233579999
Q ss_pred EECC-CCc---------hhHHHHHhccccCcEEEEEE
Q 022372 231 HVGA-AAP---------EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 231 i~~~-~~~---------~l~~~l~~~LkpGG~Lvi~v 257 (298)
++.. ... .+.+.+.+.|+|||++++..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 9999 332 23578899999999999853
No 12
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.67 E-value=1.8e-15 Score=128.88 Aligned_cols=122 Identities=33% Similarity=0.525 Sum_probs=108.2
Q ss_pred CCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC
Q 022372 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208 (298)
Q Consensus 129 ~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~ 208 (298)
+..++++.+.+..+..|. +++|++++|||||||..+..++. .+|.++|+++|.++++++..++|.++.+. +
T Consensus 14 ~~p~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~-~~p~~~v~AIe~~~~a~~~~~~N~~~fg~------~ 84 (187)
T COG2242 14 GGPMTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWAL-AGPSGRVIAIERDEEALELIERNAARFGV------D 84 (187)
T ss_pred CCCCcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHH-hCCCceEEEEecCHHHHHHHHHHHHHhCC------C
Confidence 455889999999999998 99999999999999999999994 47889999999999999999999998654 8
Q ss_pred CEEEEEcCCCCCCCCCCCccEEEECCCC--chhHHHHHhccccCcEEEEEECC
Q 022372 209 SLSVHVGDGRKGWPEFAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 209 ~v~~~~gD~~~~~~~~~~fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+.++.|++.+.+++..+||+||.+... +.+++.+.+.|||||++|+..-.
T Consensus 85 n~~vv~g~Ap~~L~~~~~~daiFIGGg~~i~~ile~~~~~l~~ggrlV~nait 137 (187)
T COG2242 85 NLEVVEGDAPEALPDLPSPDAIFIGGGGNIEEILEAAWERLKPGGRLVANAIT 137 (187)
T ss_pred cEEEEeccchHhhcCCCCCCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeec
Confidence 9999999998877664579999999874 56789999999999999996643
No 13
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1e-15 Score=135.93 Aligned_cols=134 Identities=28% Similarity=0.437 Sum_probs=116.0
Q ss_pred ccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCcc
Q 022372 126 IGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL 205 (298)
Q Consensus 126 ~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l 205 (298)
+..+.++..|...++++..+. +.||++|||.|+|||.++++|+..+++.++|++.|+.++..+.|++|++..++.
T Consensus 71 ~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~--- 145 (256)
T COG2519 71 MKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG--- 145 (256)
T ss_pred CcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccc---
Confidence 445566667777889999987 999999999999999999999999999999999999999999999999998764
Q ss_pred CCCCEEEEEcCCCCCCCCCCCccEEEECCCCc-hhHHHHHhccccCcEEEEEECCCceeEEEE
Q 022372 206 KEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-EIPQALIDQLKPGGRMVIPVGNIFQDLKVV 267 (298)
Q Consensus 206 ~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~-~l~~~l~~~LkpGG~Lvi~v~~~~q~~~~~ 267 (298)
+++++..+|..+...+ +.||+|+.+.+-+ ++.+.+.+.|||||.+++-+++..|..+.+
T Consensus 146 --d~v~~~~~Dv~~~~~~-~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~ 205 (256)
T COG2519 146 --DRVTLKLGDVREGIDE-EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTV 205 (256)
T ss_pred --cceEEEeccccccccc-cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHH
Confidence 5599999999987766 4999999999887 477999999999999999888765544333
No 14
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.61 E-value=2.9e-15 Score=134.49 Aligned_cols=134 Identities=27% Similarity=0.383 Sum_probs=105.7
Q ss_pred ccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCC
Q 022372 124 MAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 203 (298)
Q Consensus 124 ~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~ 203 (298)
+.+.+...|..|...+.++..+. +.||++|||.|+|+|.+|..|++.++|.++|+..|+.++.++.|+++++.+++.
T Consensus 15 ~~l~rrtQIiYpkD~~~I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~- 91 (247)
T PF08704_consen 15 LSLPRRTQIIYPKDISYILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLD- 91 (247)
T ss_dssp HTS-SSS----HHHHHHHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCC-
T ss_pred HhccCCcceeeCchHHHHHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCC-
Confidence 34556778888999999999998 999999999999999999999999999999999999999999999999998875
Q ss_pred ccCCCCEEEEEcCCC-CCCCC--CCCccEEEECCCCch-hHHHHHhcc-ccCcEEEEEECCCceeE
Q 022372 204 LLKEGSLSVHVGDGR-KGWPE--FAPYDAIHVGAAAPE-IPQALIDQL-KPGGRMVIPVGNIFQDL 264 (298)
Q Consensus 204 ~l~~~~v~~~~gD~~-~~~~~--~~~fD~Ii~~~~~~~-l~~~l~~~L-kpGG~Lvi~v~~~~q~~ 264 (298)
+++++.+.|+. +++.. ...+|+|+.+.+.++ ....+.+.| |+||++++-++.-.|..
T Consensus 92 ----~~v~~~~~Dv~~~g~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~ 153 (247)
T PF08704_consen 92 ----DNVTVHHRDVCEEGFDEELESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFSPCIEQVQ 153 (247)
T ss_dssp ----TTEEEEES-GGCG--STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEESSHHHHH
T ss_pred ----CCceeEecceecccccccccCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCHHHHH
Confidence 69999999985 34422 257999999999886 668899999 89999999888755443
No 15
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.61 E-value=2.9e-14 Score=113.54 Aligned_cols=115 Identities=30% Similarity=0.497 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
+..+...+++.+. +.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..+. .+++++
T Consensus 4 ~~~~~~~~~~~~~--~~~~~~vldlG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~ 74 (124)
T TIGR02469 4 KREVRALTLSKLR--LRPGDVLWDIGAGSGSITIEAARLV-PNGRVYAIERNPEALRLIERNARRFGV------SNIVIV 74 (124)
T ss_pred hHHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHHC-CCceEEEEcCCHHHHHHHHHHHHHhCC------CceEEE
Confidence 4455666777775 6778899999999999999999985 447999999999999999999887543 578888
Q ss_pred EcCCCCCCC-CCCCccEEEECCCCc---hhHHHHHhccccCcEEEEEE
Q 022372 214 VGDGRKGWP-EFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 214 ~gD~~~~~~-~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~v 257 (298)
.+|...... ...+||.|++..... .+.+.+.+.|||||++++.+
T Consensus 75 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 75 EGDAPEALEDSLPEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred eccccccChhhcCCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence 888764322 235899999987654 46789999999999999875
No 16
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.60 E-value=1.6e-14 Score=131.34 Aligned_cols=111 Identities=24% Similarity=0.286 Sum_probs=89.3
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
++.+. ++++.+|||+|||+|.++..+++..++.++|+|+|++++|++.|+++...... ....+++++++|.....
T Consensus 66 ~~~~~--~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~---~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 66 VSWSG--AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAK---SCYKNIEWIEGDATDLP 140 (261)
T ss_pred HHHhC--CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhh---ccCCCeEEEEcccccCC
Confidence 34444 67889999999999999999998876667999999999999999877542110 11258999999998766
Q ss_pred CCCCCccEEEECCCCchh------HHHHHhccccCcEEEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v 257 (298)
.+.++||+|++..+++++ .+++.+.|||||++++..
T Consensus 141 ~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d 182 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILD 182 (261)
T ss_pred CCCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence 566799999998887644 578999999999998854
No 17
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.59 E-value=1.9e-14 Score=124.18 Aligned_cols=118 Identities=25% Similarity=0.427 Sum_probs=96.3
Q ss_pred CCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC
Q 022372 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208 (298)
Q Consensus 129 ~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~ 208 (298)
...++.+.+.+.+++.+. +.++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++++...+. .
T Consensus 11 ~~~~~~~~~r~~~~~~l~--~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~------~ 81 (187)
T PRK08287 11 KVPMTKEEVRALALSKLE--LHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGC------G 81 (187)
T ss_pred CCCCchHHHHHHHHHhcC--CCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCC------C
Confidence 445677777777778886 7788999999999999999999884 668999999999999999999887543 5
Q ss_pred CEEEEEcCCCCCCCCCCCccEEEECCCC---chhHHHHHhccccCcEEEEEE
Q 022372 209 SLSVHVGDGRKGWPEFAPYDAIHVGAAA---PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 209 ~v~~~~gD~~~~~~~~~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi~v 257 (298)
+++++.+|..... .++||+|+++... ..+.+.+.+.|||||++++..
T Consensus 82 ~i~~~~~d~~~~~--~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 82 NIDIIPGEAPIEL--PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CeEEEecCchhhc--CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence 7899998875433 2579999998764 345678899999999999864
No 18
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.59 E-value=3.8e-14 Score=122.66 Aligned_cols=105 Identities=21% Similarity=0.293 Sum_probs=89.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.++++.+|||+|||+|..+..+++.. +..+|+++|.++++++.|+++.+..+. ++++++.+|..+... .++|
T Consensus 42 ~l~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l------~~i~~~~~d~~~~~~-~~~f 113 (187)
T PRK00107 42 YLPGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGL------KNVTVVHGRAEEFGQ-EEKF 113 (187)
T ss_pred hcCCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCC------CCEEEEeccHhhCCC-CCCc
Confidence 35668999999999999999999874 568999999999999999999988664 469999999887554 5789
Q ss_pred cEEEECCC--CchhHHHHHhccccCcEEEEEECCC
Q 022372 228 DAIHVGAA--APEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 228 D~Ii~~~~--~~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|+|+++.. .+.+.+.+.+.|||||++++..+..
T Consensus 114 DlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 114 DVVTSRAVASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred cEEEEccccCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 99999764 3467789999999999999987653
No 19
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.58 E-value=2.8e-14 Score=126.76 Aligned_cols=111 Identities=19% Similarity=0.375 Sum_probs=91.7
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..++..+. ++++.+|||+|||+|..+..+++..++.++|+|+|+++++++.|++++...+. ++++++.+|..
T Consensus 35 ~~~l~~l~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~------~~v~~~~~d~~ 106 (231)
T TIGR02752 35 KDTMKRMN--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL------HNVELVHGNAM 106 (231)
T ss_pred HHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC------CceEEEEechh
Confidence 44566665 77889999999999999999999877778999999999999999999876433 58999999987
Q ss_pred CCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v 257 (298)
....+.++||+|+++..+++ +.+++.+.|||||++++..
T Consensus 107 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 107 ELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred cCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEE
Confidence 75445579999999877644 4577899999999998754
No 20
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.58 E-value=2.1e-14 Score=119.75 Aligned_cols=103 Identities=25% Similarity=0.407 Sum_probs=86.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC--CCc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--APY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~--~~f 227 (298)
+++.+|||+|||+|.++..+++..++..+++|+|+++++++.|++++++.+. +++++.++|..+ ++.. +.|
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~------~ni~~~~~d~~~-l~~~~~~~~ 74 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGL------DNIEFIQGDIED-LPQELEEKF 74 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTS------TTEEEEESBTTC-GCGCSSTTE
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccc------cccceEEeehhc-cccccCCCe
Confidence 4678999999999999999996656778999999999999999999888554 699999999998 4321 689
Q ss_pred cEEEECCCCch------hHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|++..++.+ +.+.+.+.||+||++++....
T Consensus 75 D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 75 DIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999987643 457889999999999986544
No 21
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=1.8e-14 Score=131.80 Aligned_cols=151 Identities=27% Similarity=0.386 Sum_probs=110.0
Q ss_pred CCCHHHHHHHHh------C-CCCCCCCCCCCCC---------CCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEE
Q 022372 94 ITSKKVSEVMET------I-DRACFVPDGTPPY---------VDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALD 157 (298)
Q Consensus 94 i~~~~v~~a~~~------v-~R~~f~p~~~~aY---------~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLD 157 (298)
+.+.+|..+... + .|-...|+|...+ .|..++||.|.|.+ ...+++.|....++|.+|||
T Consensus 93 ~~e~DW~~~wk~~~~P~rig~~f~I~Psw~~~~~~~~~~~i~lDPGlAFGTG~HpT----T~lcL~~Le~~~~~g~~vlD 168 (300)
T COG2264 93 EDEEDWEREWKKYFHPVRIGERFVIVPSWREYPEPSDELNIELDPGLAFGTGTHPT----TSLCLEALEKLLKKGKTVLD 168 (300)
T ss_pred cChHHHHHHHHhcCCcEEeeeeEEECCCCccCCCCCCceEEEEccccccCCCCChh----HHHHHHHHHHhhcCCCEEEE
Confidence 346677777543 1 2223456652221 25568899998875 56677888777889999999
Q ss_pred EcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC-
Q 022372 158 IGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA- 236 (298)
Q Consensus 158 iG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~- 236 (298)
+|||||.++...+++ |. .+|+|+|++|.+++.|++|...++.. ..++....+.... +..++||+|++|--.
T Consensus 169 vGcGSGILaIAa~kL-GA-~~v~g~DiDp~AV~aa~eNa~~N~v~-----~~~~~~~~~~~~~-~~~~~~DvIVANILA~ 240 (300)
T COG2264 169 VGCGSGILAIAAAKL-GA-KKVVGVDIDPQAVEAARENARLNGVE-----LLVQAKGFLLLEV-PENGPFDVIVANILAE 240 (300)
T ss_pred ecCChhHHHHHHHHc-CC-ceEEEecCCHHHHHHHHHHHHHcCCc-----hhhhcccccchhh-cccCcccEEEehhhHH
Confidence 999999999999998 44 58999999999999999999998763 1223333333232 233699999998743
Q ss_pred --chhHHHHHhccccCcEEEEE
Q 022372 237 --PEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 237 --~~l~~~l~~~LkpGG~Lvi~ 256 (298)
..+...+.+.|||||+++++
T Consensus 241 vl~~La~~~~~~lkpgg~lIlS 262 (300)
T COG2264 241 VLVELAPDIKRLLKPGGRLILS 262 (300)
T ss_pred HHHHHHHHHHHHcCCCceEEEE
Confidence 35568899999999999984
No 22
>PLN02244 tocopherol O-methyltransferase
Probab=99.57 E-value=3.3e-14 Score=133.94 Aligned_cols=112 Identities=21% Similarity=0.249 Sum_probs=91.9
Q ss_pred HHHHHHHHHHccC-----CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 137 MHATCLQLLEENL-----KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 137 ~~~~~l~~L~~~l-----~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
+...+++.+. + +++.+|||||||+|.++..+++..+ .+|+|+|+++.+++.|+++....+.. ++++
T Consensus 101 ~~~~~l~~~~--~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g--~~v~gvD~s~~~i~~a~~~~~~~g~~-----~~v~ 171 (340)
T PLN02244 101 MIEESLAWAG--VPDDDEKRPKRIVDVGCGIGGSSRYLARKYG--ANVKGITLSPVQAARANALAAAQGLS-----DKVS 171 (340)
T ss_pred HHHHHHHhcC--CCcccCCCCCeEEEecCCCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHhcCCC-----CceE
Confidence 4444555554 4 6788999999999999999999753 69999999999999999988776543 5799
Q ss_pred EEEcCCCCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEE
Q 022372 212 VHVGDGRKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 212 ~~~gD~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v 257 (298)
++.+|..+...+.++||+|++....++ +.+++.+.|||||++++..
T Consensus 172 ~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~ 223 (340)
T PLN02244 172 FQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVT 223 (340)
T ss_pred EEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence 999999876555689999999888755 4478999999999999854
No 23
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.57 E-value=4e-14 Score=123.40 Aligned_cols=123 Identities=28% Similarity=0.382 Sum_probs=98.7
Q ss_pred CccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCC
Q 022372 130 ATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 209 (298)
Q Consensus 130 ~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~ 209 (298)
..+++..+.+..+..+. +.++.+|||+|||+|.++..+++..++.++|+++|+++++++.+++++...+.. .+
T Consensus 21 ~~~t~~~~r~~~l~~l~--~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~-----~~ 93 (198)
T PRK00377 21 IPMTKEEIRALALSKLR--LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVL-----NN 93 (198)
T ss_pred CCCCHHHHHHHHHHHcC--CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCC-----CC
Confidence 34666666666666665 889999999999999999999987666679999999999999999999886532 68
Q ss_pred EEEEEcCCCCCCCC-CCCccEEEECCCC---chhHHHHHhccccCcEEEEEECC
Q 022372 210 LSVHVGDGRKGWPE-FAPYDAIHVGAAA---PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 210 v~~~~gD~~~~~~~-~~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+.++.+|..+..+. .+.||+|+++... ..+.+.+.+.|||||++++....
T Consensus 94 v~~~~~d~~~~l~~~~~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 94 IVLIKGEAPEILFTINEKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred eEEEEechhhhHhhcCCCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEEeec
Confidence 89999998764332 2579999996653 45678889999999999985543
No 24
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.55 E-value=5.6e-14 Score=121.01 Aligned_cols=102 Identities=20% Similarity=0.229 Sum_probs=84.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
++.+|||+|||+|+++..++.. .+.++|+++|.++++++.++++.++.+. ++++++++|..+. ...++||+|
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~------~~i~~i~~d~~~~-~~~~~fD~I 113 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGL------NNVEIVNGRAEDF-QHEEQFDVI 113 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCC------CCeEEEecchhhc-cccCCccEE
Confidence 4789999999999999999876 4667999999999999999999887553 5799999998774 334789999
Q ss_pred EECCC--CchhHHHHHhccccCcEEEEEECCC
Q 022372 231 HVGAA--APEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 231 i~~~~--~~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+++.. .+.+.+.+.+.|||||++++..+..
T Consensus 114 ~s~~~~~~~~~~~~~~~~LkpgG~lvi~~~~~ 145 (181)
T TIGR00138 114 TSRALASLNVLLELTLNLLKVGGYFLAYKGKK 145 (181)
T ss_pred EehhhhCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 99862 2345577889999999999987653
No 25
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.54 E-value=1.2e-13 Score=117.54 Aligned_cols=112 Identities=23% Similarity=0.368 Sum_probs=89.2
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ..++.+|||+|||+|.++..+++. .+..+|+++|+++.+++.+++|+..++. .+++++..|..
T Consensus 21 ~lL~~~l~--~~~~~~vLDlG~G~G~i~~~la~~-~~~~~v~~vDi~~~a~~~a~~n~~~n~~------~~v~~~~~d~~ 91 (170)
T PF05175_consen 21 RLLLDNLP--KHKGGRVLDLGCGSGVISLALAKR-GPDAKVTAVDINPDALELAKRNAERNGL------ENVEVVQSDLF 91 (170)
T ss_dssp HHHHHHHH--HHTTCEEEEETSTTSHHHHHHHHT-STCEEEEEEESBHHHHHHHHHHHHHTTC------TTEEEEESSTT
T ss_pred HHHHHHHh--hccCCeEEEecCChHHHHHHHHHh-CCCCEEEEEcCCHHHHHHHHHHHHhcCc------ccccccccccc
Confidence 34556665 226789999999999999999998 4667899999999999999999998775 34999999998
Q ss_pred CCCCCCCCccEEEECCCCc-----------hhHHHHHhccccCcEEEEEECCC
Q 022372 219 KGWPEFAPYDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+..+ .++||+|+++++++ .+.+...+.|||||.+++-....
T Consensus 92 ~~~~-~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 92 EALP-DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp TTCC-TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred cccc-ccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeecC
Confidence 8766 47999999998763 33467789999999998866543
No 26
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.52 E-value=3.9e-14 Score=107.13 Aligned_cols=89 Identities=26% Similarity=0.417 Sum_probs=74.2
Q ss_pred EEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCC
Q 022372 156 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAA 235 (298)
Q Consensus 156 LDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~ 235 (298)
||+|||+|..+..+++. +..+|+++|+++++++.++++... .++.+..+|......++++||+|++...
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~---------~~~~~~~~d~~~l~~~~~sfD~v~~~~~ 69 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKN---------EGVSFRQGDAEDLPFPDNSFDVVFSNSV 69 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTT---------STEEEEESBTTSSSS-TT-EEEEEEESH
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccc---------cCchheeehHHhCccccccccccccccc
Confidence 89999999999999998 337999999999999999988654 4566999999887767789999999998
Q ss_pred Cchh------HHHHHhccccCcEEEE
Q 022372 236 APEI------PQALIDQLKPGGRMVI 255 (298)
Q Consensus 236 ~~~l------~~~l~~~LkpGG~Lvi 255 (298)
++++ .+++.+.|||||++++
T Consensus 70 ~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 70 LHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp GGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred eeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 8654 4789999999999986
No 27
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.52 E-value=2.2e-13 Score=125.55 Aligned_cols=125 Identities=24% Similarity=0.343 Sum_probs=94.5
Q ss_pred CCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022372 120 VDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 199 (298)
Q Consensus 120 ~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~ 199 (298)
.|..+++|.|.+.+ ...+++.+.....++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.|++|...+
T Consensus 132 ldpg~aFgtG~h~t----t~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g~-~~V~avDid~~al~~a~~n~~~n 205 (288)
T TIGR00406 132 LDPGLAFGTGTHPT----TSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-GA-AKVVGIDIDPLAVESARKNAELN 205 (288)
T ss_pred ECCCCcccCCCCHH----HHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHc
Confidence 45667788887754 33445555444667899999999999999888875 43 58999999999999999999876
Q ss_pred ccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc---hhHHHHHhccccCcEEEEEE
Q 022372 200 AAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 200 ~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~v 257 (298)
+.. .++.+..++.... ..++||+|+++...+ .+..++.+.|||||+++++-
T Consensus 206 ~~~-----~~~~~~~~~~~~~--~~~~fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sg 259 (288)
T TIGR00406 206 QVS-----DRLQVKLIYLEQP--IEGKADVIVANILAEVIKELYPQFSRLVKPGGWLILSG 259 (288)
T ss_pred CCC-----cceEEEecccccc--cCCCceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 653 4566666653222 236899999987654 45578899999999999853
No 28
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.52 E-value=8.5e-14 Score=127.24 Aligned_cols=108 Identities=27% Similarity=0.312 Sum_probs=83.1
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. +++|++|||||||.|.++..+++..| .+|+|+.+|++..+.+++++.+.++. +++++...|.
T Consensus 51 ~~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~g--~~v~gitlS~~Q~~~a~~~~~~~gl~-----~~v~v~~~D~ 121 (273)
T PF02353_consen 51 LDLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERYG--CHVTGITLSEEQAEYARERIREAGLE-----DRVEVRLQDY 121 (273)
T ss_dssp HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSS-----STEEEEES-G
T ss_pred HHHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHcC--cEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEEeec
Confidence 444555555 89999999999999999999999964 69999999999999999999987765 6899999997
Q ss_pred CCCCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v 257 (298)
.+.. .+||.|++...++++ ++.+.+.|||||++++..
T Consensus 122 ~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 122 RDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp GG------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred cccC---CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 7642 389999999988765 478889999999999743
No 29
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.52 E-value=5.7e-14 Score=129.30 Aligned_cols=123 Identities=28% Similarity=0.484 Sum_probs=93.8
Q ss_pred CCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 119 YVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 119 Y~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
+.|..++||.|.|.+ ...+++++.....+|.+|||+|||||.++...+++ |. .+|+++|+++.+++.|++|+..
T Consensus 133 ~idPg~AFGTG~H~T----T~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl-GA-~~v~a~DiDp~Av~~a~~N~~~ 206 (295)
T PF06325_consen 133 EIDPGMAFGTGHHPT----TRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL-GA-KKVVAIDIDPLAVEAARENAEL 206 (295)
T ss_dssp EESTTSSS-SSHCHH----HHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT-TB-SEEEEEESSCHHHHHHHHHHHH
T ss_pred EECCCCcccCCCCHH----HHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEecCCHHHHHHHHHHHHH
Confidence 346678999998865 56677777767889999999999999999999987 54 5899999999999999999999
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc---hhHHHHHhccccCcEEEEE
Q 022372 199 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 199 ~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~ 256 (298)
++.. .++.+. . ...... ++||+|++|-... .+...+.+.|||||+++++
T Consensus 207 N~~~-----~~~~v~--~-~~~~~~-~~~dlvvANI~~~vL~~l~~~~~~~l~~~G~lIlS 258 (295)
T PF06325_consen 207 NGVE-----DRIEVS--L-SEDLVE-GKFDLVVANILADVLLELAPDIASLLKPGGYLILS 258 (295)
T ss_dssp TT-T-----TCEEES--C-TSCTCC-S-EEEEEEES-HHHHHHHHHHCHHHEEEEEEEEEE
T ss_pred cCCC-----eeEEEE--E-eccccc-ccCCEEEECCCHHHHHHHHHHHHHhhCCCCEEEEc
Confidence 8875 455543 1 122222 7899999987654 4557788899999999994
No 30
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.52 E-value=1.3e-13 Score=126.92 Aligned_cols=133 Identities=20% Similarity=0.260 Sum_probs=100.3
Q ss_pred CCCccccCCCccChHHHHHHHHHHHHccC--CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 121 DSPMAIGYNATISAPHMHATCLQLLEENL--KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 121 d~~~~~g~~~~is~p~~~~~~l~~L~~~l--~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
...+.++.+..++.|.....+...+...+ .++.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++|+..
T Consensus 89 g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~ 167 (284)
T TIGR03533 89 GLEFYVDERVLIPRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIER 167 (284)
T ss_pred CcEEEECCCCccCCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 44566666777777665444444433212 345799999999999999999985 557999999999999999999988
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC-------------------------------chhHHHHHhcc
Q 022372 199 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA-------------------------------PEIPQALIDQL 247 (298)
Q Consensus 199 ~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~-------------------------------~~l~~~l~~~L 247 (298)
++.. .+++++.+|..+..+ .++||+|+++++. ..+.+.+.+.|
T Consensus 168 ~~~~-----~~i~~~~~D~~~~~~-~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L 241 (284)
T TIGR03533 168 HGLE-----DRVTLIQSDLFAALP-GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHL 241 (284)
T ss_pred cCCC-----CcEEEEECchhhccC-CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 7653 579999999876553 3579999998653 12235567899
Q ss_pred ccCcEEEEEECCC
Q 022372 248 KPGGRMVIPVGNI 260 (298)
Q Consensus 248 kpGG~Lvi~v~~~ 260 (298)
+|||++++.++..
T Consensus 242 ~~gG~l~~e~g~~ 254 (284)
T TIGR03533 242 NENGVLVVEVGNS 254 (284)
T ss_pred CCCCEEEEEECcC
Confidence 9999999988863
No 31
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.51 E-value=1.1e-13 Score=125.22 Aligned_cols=103 Identities=22% Similarity=0.300 Sum_probs=84.4
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ..++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|+++ +++++.+|..
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------------~~~~~~~d~~ 82 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------------GVDARTGDVR 82 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------------CCcEEEcChh
Confidence 44566665 6778999999999999999999985 567999999999999998642 4678889987
Q ss_pred CCCCCCCCccEEEECCCCchh------HHHHHhccccCcEEEEEEC
Q 022372 219 KGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~ 258 (298)
... ..++||+|+++.+++++ .+++.+.|||||++++.++
T Consensus 83 ~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 83 DWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred hCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcC
Confidence 553 34789999999987654 3678899999999999764
No 32
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.51 E-value=3.9e-13 Score=116.86 Aligned_cols=123 Identities=25% Similarity=0.381 Sum_probs=96.7
Q ss_pred CCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCC
Q 022372 128 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE 207 (298)
Q Consensus 128 ~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~ 207 (298)
.+..++++.+...++..+. ++++.+|||+|||+|.++..+++. .+.++|+++|+++++++.+++|+++.+.
T Consensus 19 ~~~p~t~~~v~~~l~~~l~--~~~~~~VLDiG~G~G~~~~~la~~-~~~~~V~~vD~s~~~~~~a~~n~~~~~~------ 89 (196)
T PRK07402 19 PGIPLTKREVRLLLISQLR--LEPDSVLWDIGAGTGTIPVEAGLL-CPKGRVIAIERDEEVVNLIRRNCDRFGV------ 89 (196)
T ss_pred CCCCCCHHHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHhCC------
Confidence 3455677777777777775 778899999999999999999877 4558999999999999999999987553
Q ss_pred CCEEEEEcCCCCCCCC-CCCccEEEECCCC--chhHHHHHhccccCcEEEEEECC
Q 022372 208 GSLSVHVGDGRKGWPE-FAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 208 ~~v~~~~gD~~~~~~~-~~~fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+++++.+|..+.+.. ...+|.++..... +.+.+.+.+.|||||++++...+
T Consensus 90 ~~v~~~~~d~~~~~~~~~~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 90 KNVEVIEGSAPECLAQLAPAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCeEEEECchHHHHhhCCCCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 5799999987653221 1346787775432 46778999999999999997654
No 33
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.50 E-value=2.1e-14 Score=126.69 Aligned_cols=132 Identities=20% Similarity=0.313 Sum_probs=100.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
-+|.+|||||||.|.++..+|+.. ..|+|+|.+++.++.|+.+..+.++ ++++.+....+.....++||+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~G---a~VtgiD~se~~I~~Ak~ha~e~gv-------~i~y~~~~~edl~~~~~~FDv 127 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLG---ASVTGIDASEKPIEVAKLHALESGV-------NIDYRQATVEDLASAGGQFDV 127 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCC---CeeEEecCChHHHHHHHHhhhhccc-------cccchhhhHHHHHhcCCCccE
Confidence 378999999999999999999984 7999999999999999999887654 355666666555444479999
Q ss_pred EEECCCCchhH------HHHHhccccCcEEEEEECCCc----------------------eeE-------EEEEEcCCCC
Q 022372 230 IHVGAAAPEIP------QALIDQLKPGGRMVIPVGNIF----------------------QDL-------KVVDKNQDGS 274 (298)
Q Consensus 230 Ii~~~~~~~l~------~~l~~~LkpGG~Lvi~v~~~~----------------------q~~-------~~~~~~~~g~ 274 (298)
|+|..+++|++ +++.+++||||.++++..+.. -.. .++....+..
T Consensus 128 V~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 128 VTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred EEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCC
Confidence 99999998876 568899999999999664421 000 1111122335
Q ss_pred eEEEEeeeEEEeecccc
Q 022372 275 LSIWSETSVRYVPLTSR 291 (298)
Q Consensus 275 ~~~~~l~~v~fvPl~~~ 291 (298)
+....+.++.|-|++..
T Consensus 208 ~~~~~~~g~~y~p~~~~ 224 (243)
T COG2227 208 LKIIDRKGLTYNPLTNS 224 (243)
T ss_pred ceEEeecceEeccccce
Confidence 77778889999998765
No 34
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.50 E-value=2.8e-13 Score=122.14 Aligned_cols=105 Identities=18% Similarity=0.307 Sum_probs=85.5
Q ss_pred HHccCCCCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC
Q 022372 145 LEENLKPGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE 223 (298)
Q Consensus 145 L~~~l~~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~ 223 (298)
+...++++.+|||+|||+|..+..+++.+ .+..+++++|+++.+++.|++++...+.. .+++++.+|..+...
T Consensus 50 ~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~-----~~v~~~~~d~~~~~~- 123 (247)
T PRK15451 50 AERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAP-----TPVDVIEGDIRDIAI- 123 (247)
T ss_pred HHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-----CCeEEEeCChhhCCC-
Confidence 33346788999999999999999998853 35689999999999999999999875542 579999999876543
Q ss_pred CCCccEEEECCCCc--------hhHHHHHhccccCcEEEEE
Q 022372 224 FAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~ 256 (298)
..+|+|+++.+++ .+.+++.+.|||||.+++.
T Consensus 124 -~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 124 -ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred -CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 3599999887764 3457899999999999985
No 35
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.50 E-value=2.7e-13 Score=123.64 Aligned_cols=102 Identities=30% Similarity=0.463 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++++.+|||+|||+|..+..+++..++.++|+++|+++++++.|+++....+. .+++++.+|........++||
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~------~~v~~~~~d~~~l~~~~~~fD 148 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY------TNVEFRLGEIEALPVADNSVD 148 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC------CCEEEEEcchhhCCCCCCcee
Confidence 77899999999999999988888877777999999999999999999876543 588999999876544446899
Q ss_pred EEEECCCCc------hhHHHHHhccccCcEEEEE
Q 022372 229 AIHVGAAAP------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 229 ~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~ 256 (298)
+|+++.+++ .+.+++++.|||||++++.
T Consensus 149 ~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~ 182 (272)
T PRK11873 149 VIISNCVINLSPDKERVFKEAFRVLKPGGRFAIS 182 (272)
T ss_pred EEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEE
Confidence 999988653 4568899999999999984
No 36
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.50 E-value=2.3e-13 Score=123.02 Aligned_cols=107 Identities=20% Similarity=0.279 Sum_probs=87.0
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...++..+. +.++.+|||+|||+|.++..+++.. +..+|+|+|+++.+++.|+++. +++.++.+|.
T Consensus 20 ~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----------~~~~~~~~d~ 85 (258)
T PRK01683 20 ARDLLARVP--LENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----------PDCQFVEADI 85 (258)
T ss_pred HHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----------CCCeEEECch
Confidence 344555554 6778999999999999999999885 5579999999999999998763 4678899998
Q ss_pred CCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEECC
Q 022372 218 RKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
....+ .++||+|+++.++++ +.+++.+.|||||.+++.++.
T Consensus 86 ~~~~~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 86 ASWQP-PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred hccCC-CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCC
Confidence 75443 368999999998754 347889999999999997643
No 37
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.49 E-value=2.7e-13 Score=118.17 Aligned_cols=105 Identities=18% Similarity=0.143 Sum_probs=83.5
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ..++.+|||+|||+|..+..|++.. .+|+|+|+++++++.++++....++ .++++..+|..
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g---~~V~gvD~S~~~i~~a~~~~~~~~~------~~v~~~~~d~~ 88 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANG---FDVTAWDKNPMSIANLERIKAAENL------DNLHTAVVDLN 88 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCC---CEEEEEeCCHHHHHHHHHHHHHcCC------CcceEEecChh
Confidence 34455555 5567899999999999999999873 6999999999999999998877543 46888888886
Q ss_pred CCCCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi 255 (298)
....+ ++||+|++..+++ .+.+++.+.|||||.+++
T Consensus 89 ~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 89 NLTFD-GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred hCCcC-CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 54333 6799999988763 344788899999999654
No 38
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.49 E-value=3.6e-13 Score=122.43 Aligned_cols=133 Identities=27% Similarity=0.265 Sum_probs=104.4
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ++||++|||||||.|.++.++|+..+ .+|+|+++|++..+.+++++...++. .+++++..|..
T Consensus 62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y~--v~V~GvTlS~~Q~~~~~~r~~~~gl~-----~~v~v~l~d~r 132 (283)
T COG2230 62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEYG--VTVVGVTLSEEQLAYAEKRIAARGLE-----DNVEVRLQDYR 132 (283)
T ss_pred HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHcC--CEEEEeeCCHHHHHHHHHHHHHcCCC-----cccEEEecccc
Confidence 34555565 99999999999999999999999964 79999999999999999999997764 68999999887
Q ss_pred CCCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEEC-CCceeEEEEEEcCCCCeEEEEeeeEEEeec
Q 022372 219 KGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVG-NIFQDLKVVDKNQDGSLSIWSETSVRYVPL 288 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v~-~~~q~~~~~~~~~~g~~~~~~l~~v~fvPl 288 (298)
+.. ++||.|++...++++ ++.+.+.|+|||++++..- ...+... ....|..+.+||-.+.|-
T Consensus 133 d~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~-----~~~~~i~~yiFPgG~lPs 203 (283)
T COG2230 133 DFE---EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR-----RFPDFIDKYIFPGGELPS 203 (283)
T ss_pred ccc---cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc-----cchHHHHHhCCCCCcCCC
Confidence 654 349999999988654 4778899999999998543 2322221 233466667777777773
No 39
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.49 E-value=6.6e-14 Score=121.19 Aligned_cols=105 Identities=25% Similarity=0.403 Sum_probs=89.4
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
++..+. +.+..+|.|+|||+|..|..|++++ |...++|+|.|++|++.|++++ ++++|..+|....
T Consensus 22 Lla~Vp--~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~rl-----------p~~~f~~aDl~~w 87 (257)
T COG4106 22 LLARVP--LERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQRL-----------PDATFEEADLRTW 87 (257)
T ss_pred HHhhCC--ccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHhC-----------CCCceecccHhhc
Confidence 344444 5566899999999999999999997 6789999999999999998765 7889999998775
Q ss_pred CCCCCCccEEEECCCCchhH------HHHHhccccCcEEEEEECCC
Q 022372 221 WPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~------~~l~~~LkpGG~Lvi~v~~~ 260 (298)
-++ .++|+++++++++.++ ..+..+|.|||+|.+.+++.
T Consensus 88 ~p~-~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN 132 (257)
T COG4106 88 KPE-QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDN 132 (257)
T ss_pred CCC-CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCc
Confidence 444 7899999999987554 67889999999999999875
No 40
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.48 E-value=1.9e-13 Score=122.30 Aligned_cols=112 Identities=21% Similarity=0.269 Sum_probs=92.2
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+.++..+. ...++.+|||+|||+|+.+..+++..++.++|+++|+++++++.|++++++.++. ++++++.+|+
T Consensus 56 ~g~~L~~l~-~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~-----~~i~~~~gda 129 (234)
T PLN02781 56 EGLFLSMLV-KIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVD-----HKINFIQSDA 129 (234)
T ss_pred HHHHHHHHH-HHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEccH
Confidence 455555554 3556789999999999999999998777789999999999999999999998764 6899999998
Q ss_pred CCCCC------CCCCccEEEECCCC---chhHHHHHhccccCcEEEE
Q 022372 218 RKGWP------EFAPYDAIHVGAAA---PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~~------~~~~fD~Ii~~~~~---~~l~~~l~~~LkpGG~Lvi 255 (298)
.+..+ +.++||.|++++.. .++.+.+.+.|||||.+++
T Consensus 130 ~~~L~~l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 130 LSALDQLLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HHHHHHHHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEE
Confidence 76432 13689999999764 3556788999999999886
No 41
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.48 E-value=1.3e-13 Score=128.68 Aligned_cols=102 Identities=22% Similarity=0.270 Sum_probs=83.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
.++.+|||||||+|.++..+++. + .+|+|+|.++++++.|+++....+.. .+++++++|+.+.....++||+
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~-g--~~V~GID~s~~~i~~Ar~~~~~~~~~-----~~i~~~~~dae~l~~~~~~FD~ 201 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARM-G--ATVTGVDAVDKNVKIARLHADMDPVT-----STIEYLCTTAEKLADEGRKFDA 201 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHhcCcc-----cceeEEecCHHHhhhccCCCCE
Confidence 46779999999999999999875 2 69999999999999999886543321 5789999998665444578999
Q ss_pred EEECCCCchh------HHHHHhccccCcEEEEEECC
Q 022372 230 IHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 230 Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|++..+++++ .+++.++|||||.+++...+
T Consensus 202 Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~n 237 (322)
T PLN02396 202 VLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTIN 237 (322)
T ss_pred EEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999988765 47889999999999998654
No 42
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.48 E-value=6e-13 Score=120.19 Aligned_cols=117 Identities=31% Similarity=0.491 Sum_probs=87.4
Q ss_pred CCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhc
Q 022372 121 DSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSA 200 (298)
Q Consensus 121 d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~ 200 (298)
|..+++|.|.+.+ ...+++.+.....++.+|||+|||+|.++..+++. +. .+|+++|+++.+++.|++|+..++
T Consensus 93 ~p~~afgtg~h~t----t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g~-~~v~giDis~~~l~~A~~n~~~~~ 166 (250)
T PRK00517 93 DPGMAFGTGTHPT----TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-GA-KKVLAVDIDPQAVEAARENAELNG 166 (250)
T ss_pred CCCCccCCCCCHH----HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHcC
Confidence 4456777776654 33455555444678899999999999999887775 44 479999999999999999998765
Q ss_pred cCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc---hhHHHHHhccccCcEEEEE
Q 022372 201 AAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP---EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 201 ~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~ 256 (298)
.. .++.+..++ .+||+|+++...+ .+.+++.+.|||||++++.
T Consensus 167 ~~-----~~~~~~~~~--------~~fD~Vvani~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 167 VE-----LNVYLPQGD--------LKADVIVANILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred CC-----ceEEEccCC--------CCcCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 42 344443332 2799999987644 4557889999999999996
No 43
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=8.2e-13 Score=122.79 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=100.2
Q ss_pred CCCccccCCCccChHHHHHHHHHHHHccCC--CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 121 DSPMAIGYNATISAPHMHATCLQLLEENLK--PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 121 d~~~~~g~~~~is~p~~~~~~l~~L~~~l~--~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
...+.++.+..++.|.+...+...+...++ +..+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++|+..
T Consensus 101 g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~ 179 (307)
T PRK11805 101 GLEFYVDERVLVPRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIER 179 (307)
T ss_pred CcEEEECCCCcCCCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHH
Confidence 445666667777777655444444332222 23689999999999999999984 567999999999999999999988
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC-------------------------------chhHHHHHhcc
Q 022372 199 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA-------------------------------PEIPQALIDQL 247 (298)
Q Consensus 199 ~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~-------------------------------~~l~~~l~~~L 247 (298)
.+.. ++++++++|..+..+. ++||+|+++++. ..+.+.+.+.|
T Consensus 180 ~~l~-----~~i~~~~~D~~~~l~~-~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L 253 (307)
T PRK11805 180 HGLE-----DRVTLIESDLFAALPG-RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYL 253 (307)
T ss_pred hCCC-----CcEEEEECchhhhCCC-CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhc
Confidence 6653 5799999998765543 589999998643 12235667899
Q ss_pred ccCcEEEEEECCC
Q 022372 248 KPGGRMVIPVGNI 260 (298)
Q Consensus 248 kpGG~Lvi~v~~~ 260 (298)
+|||++++.++..
T Consensus 254 ~pgG~l~~E~g~~ 266 (307)
T PRK11805 254 TEDGVLVVEVGNS 266 (307)
T ss_pred CCCCEEEEEECcC
Confidence 9999999988865
No 44
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.47 E-value=3.6e-13 Score=121.81 Aligned_cols=102 Identities=20% Similarity=0.203 Sum_probs=84.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~fD 228 (298)
.++.+|||+|||+|..+..+++.. .+|+++|+++++++.|+++....+.. ++++++++|..+.. ...++||
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g---~~v~~vD~s~~~l~~a~~~~~~~g~~-----~~v~~~~~d~~~l~~~~~~~fD 114 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELG---HQVILCDLSAEMIQRAKQAAEAKGVS-----DNMQFIHCAAQDIAQHLETPVD 114 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCc-----cceEEEEcCHHHHhhhcCCCCC
Confidence 456799999999999999999873 68999999999999999998876543 67899999886532 2336899
Q ss_pred EEEECCCCchh------HHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAPEI------PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|++..+++++ .+++.+.|||||++++.+.+
T Consensus 115 ~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 115 LILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred EEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 99999887543 47889999999999986554
No 45
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.46 E-value=7.7e-13 Score=120.46 Aligned_cols=105 Identities=26% Similarity=0.321 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+++|.+|||+|||+|..+..+++.+++.+.|+++|+++.+++.+++++++.+. .+++++.+|........+.||
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~~~~~~fD 142 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV------LNVAVTNFDGRVFGAAVPKFD 142 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC------CcEEEecCCHHHhhhhccCCC
Confidence 78899999999999999999999887668999999999999999999988654 579999999875433335799
Q ss_pred EEEECCCCc----------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+++++.. ++.+.+.+.|||||+|+.+...
T Consensus 143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS 201 (264)
T ss_pred EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 999987632 2446677899999999997643
No 46
>PRK04266 fibrillarin; Provisional
Probab=99.46 E-value=1.2e-12 Score=116.57 Aligned_cols=114 Identities=22% Similarity=0.262 Sum_probs=87.1
Q ss_pred HHHHHHHHHH-HccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 136 HMHATCLQLL-EENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 136 ~~~~~~l~~L-~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
...+.++..+ ...+++|.+|||+|||+|..+..+++.++ .++|+++|+++++++.+.++.+.. .|+.++.
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--------~nv~~i~ 126 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--------KNIIPIL 126 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--------CCcEEEE
Confidence 4445555533 11378999999999999999999999875 579999999999999887776542 5789999
Q ss_pred cCCCCCC---CCCCCccEEEECCCCch----hHHHHHhccccCcEEEEEEC
Q 022372 215 GDGRKGW---PEFAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 215 gD~~~~~---~~~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+|..... .-.++||+|+++...++ +.+++.+.|||||++++.+.
T Consensus 127 ~D~~~~~~~~~l~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~ 177 (226)
T PRK04266 127 ADARKPERYAHVVEKVDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLAIK 177 (226)
T ss_pred CCCCCcchhhhccccCCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9986421 11256999998766432 35788999999999999654
No 47
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.45 E-value=6.3e-13 Score=120.99 Aligned_cols=108 Identities=22% Similarity=0.203 Sum_probs=86.6
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...++..+. ++++.+|||+|||+|..+..+++..+ .+|+++|+++.+++.|+++... .+++.+..+|.
T Consensus 41 ~~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~--~~v~giD~s~~~~~~a~~~~~~--------~~~i~~~~~D~ 108 (263)
T PTZ00098 41 TTKILSDIE--LNENSKVLDIGSGLGGGCKYINEKYG--AHVHGVDICEKMVNIAKLRNSD--------KNKIEFEANDI 108 (263)
T ss_pred HHHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhcC--CEEEEEECCHHHHHHHHHHcCc--------CCceEEEECCc
Confidence 445666665 78999999999999999999987642 6999999999999999987643 15799999998
Q ss_pred CCCCCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~v 257 (298)
.....+.++||+|++...+. .+.+++.+.|||||++++..
T Consensus 109 ~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d 156 (263)
T PTZ00098 109 LKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITD 156 (263)
T ss_pred ccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 76544457899999966543 34478899999999999854
No 48
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.44 E-value=1e-12 Score=115.77 Aligned_cols=112 Identities=22% Similarity=0.371 Sum_probs=93.1
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE-cC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GD 216 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~-gD 216 (298)
.+.++..|. ...+..+|||+|++.||.+..||..++.+++++++|+++++.+.|++++++.++. +++.++. +|
T Consensus 47 ~g~~L~~L~-~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~-----~~i~~~~~gd 120 (219)
T COG4122 47 TGALLRLLA-RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVD-----DRIELLLGGD 120 (219)
T ss_pred HHHHHHHHH-HhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCc-----ceEEEEecCc
Confidence 455555554 3667789999999999999999999865789999999999999999999998876 6688888 57
Q ss_pred CCCCCCC--CCCccEEEECCCCchh---HHHHHhccccCcEEEE
Q 022372 217 GRKGWPE--FAPYDAIHVGAAAPEI---PQALIDQLKPGGRMVI 255 (298)
Q Consensus 217 ~~~~~~~--~~~fD~Ii~~~~~~~l---~~~l~~~LkpGG~Lvi 255 (298)
..+.... .++||+||.++..... .+.+.++|+|||.+++
T Consensus 121 al~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 121 ALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred HHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEE
Confidence 7764432 4799999999987654 4778899999999997
No 49
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.44 E-value=9.3e-13 Score=114.64 Aligned_cols=104 Identities=19% Similarity=0.227 Sum_probs=79.7
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ..++.+|||+|||+|+.+..+++.. .+|+|+|+++.+++.++++....+. ++.+...|..
T Consensus 20 ~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g---~~V~~iD~s~~~l~~a~~~~~~~~~-------~v~~~~~d~~ 87 (195)
T TIGR00477 20 SAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAG---YDVRAWDHNPASIASVLDMKARENL-------PLRTDAYDIN 87 (195)
T ss_pred HHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHHHhCC-------CceeEeccch
Confidence 34455554 4456799999999999999999863 6999999999999999988776442 3666777765
Q ss_pred CCCCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi 255 (298)
....+ ++||+|++...++ .+.+++.+.|||||++++
T Consensus 88 ~~~~~-~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli 131 (195)
T TIGR00477 88 AAALN-EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLI 131 (195)
T ss_pred hcccc-CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 43333 5799999987764 344788899999999655
No 50
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.44 E-value=3.1e-13 Score=107.11 Aligned_cols=100 Identities=27% Similarity=0.309 Sum_probs=82.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCCccE
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPYDA 229 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~~fD~ 229 (298)
|.+|||+|||+|.++..+++.. ..+++++|+++..++.++.++...+.. .+++++++|..+.. ...++||+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~D~ 73 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLD-----DRVEVIVGDARDLPEPLPDGKFDL 73 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTT-----TTEEEEESHHHHHHHTCTTT-EEE
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCC-----ceEEEEECchhhchhhccCceeEE
Confidence 5689999999999999999985 479999999999999999999886653 68999999987643 34479999
Q ss_pred EEECCCCc--------------hhHHHHHhccccCcEEEEEEC
Q 022372 230 IHVGAAAP--------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 230 Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|+++.+.. .+.+.+.+.|||||++++.++
T Consensus 74 Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 74 IVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 99999863 234778899999999998765
No 51
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.44 E-value=1.9e-12 Score=123.09 Aligned_cols=112 Identities=21% Similarity=0.224 Sum_probs=88.4
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+++.+. ...+.+|||+|||+|.++..+++. .|..+|+++|.++.+++.|++|++.++.. ...++++..+|...
T Consensus 219 llL~~lp--~~~~~~VLDLGCGtGvi~i~la~~-~P~~~V~~vD~S~~Av~~A~~N~~~n~~~---~~~~v~~~~~D~l~ 292 (378)
T PRK15001 219 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDK-NPQAKVVFVDESPMAVASSRLNVETNMPE---ALDRCEFMINNALS 292 (378)
T ss_pred HHHHhCC--cccCCeEEEEeccccHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCcc---cCceEEEEEccccc
Confidence 3555554 233469999999999999999998 47789999999999999999999876431 12478999999876
Q ss_pred CCCCCCCccEEEECCCCc-----------hhHHHHHhccccCcEEEEEEC
Q 022372 220 GWPEFAPYDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...+ ++||+|+++++++ .+.+.+.+.|||||.+++...
T Consensus 293 ~~~~-~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 293 GVEP-FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred cCCC-CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 5533 5899999998864 244677899999999999653
No 52
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.43 E-value=2.4e-12 Score=115.23 Aligned_cols=102 Identities=16% Similarity=0.224 Sum_probs=83.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
+.++.+|||+|||+|..+..+++.+ .++.+++|+|+++++++.|++++...+.. .+++++.+|...... ..+
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~-----~~v~~~~~d~~~~~~--~~~ 123 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSE-----IPVEILCNDIRHVEI--KNA 123 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCC-----CCeEEEECChhhCCC--CCC
Confidence 5678899999999999999999875 25689999999999999999998764432 578999999876543 358
Q ss_pred cEEEECCCCch--------hHHHHHhccccCcEEEEEE
Q 022372 228 DAIHVGAAAPE--------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 228 D~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v 257 (298)
|+|++..++++ +.+++.+.|||||++++.-
T Consensus 124 d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 124 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred CEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 99998887654 3478899999999999863
No 53
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.43 E-value=3.6e-13 Score=118.07 Aligned_cols=113 Identities=24% Similarity=0.353 Sum_probs=92.2
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
..+.++..+.. .....+||||||++||.+..+|+.++++++++++|.+++..+.|++++++.++. ++++++.+|
T Consensus 32 ~~g~lL~~l~~-~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~-----~~I~~~~gd 105 (205)
T PF01596_consen 32 ETGQLLQMLVR-LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLD-----DRIEVIEGD 105 (205)
T ss_dssp HHHHHHHHHHH-HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGG-----GGEEEEES-
T ss_pred HHHHHHHHHHH-hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCC-----CcEEEEEec
Confidence 35666666652 445579999999999999999998877899999999999999999999998765 789999999
Q ss_pred CCCCCC----C--CCCccEEEECCCCchhH---HHHHhccccCcEEEE
Q 022372 217 GRKGWP----E--FAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVI 255 (298)
Q Consensus 217 ~~~~~~----~--~~~fD~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi 255 (298)
+.+..+ . .++||.||.++...++. +.+.+.|+|||.+++
T Consensus 106 a~~~l~~l~~~~~~~~fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 106 ALEVLPELANDGEEGQFDFVFIDADKRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp HHHHHHHHHHTTTTTSEEEEEEESTGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred cHhhHHHHHhccCCCceeEEEEcccccchhhHHHHHhhhccCCeEEEE
Confidence 875321 1 25899999999987654 677899999999997
No 54
>PLN02476 O-methyltransferase
Probab=99.42 E-value=1.2e-12 Score=119.49 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=93.5
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+.++..+. ...+..+|||+|+++||.+..+++.++++++++++|.+++..+.|++++++.++. ++++++.||+
T Consensus 106 ~g~lL~~L~-~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~-----~~I~li~GdA 179 (278)
T PLN02476 106 QAQLLAMLV-QILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVS-----HKVNVKHGLA 179 (278)
T ss_pred HHHHHHHHH-HhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEEcCH
Confidence 555566654 2556789999999999999999998877789999999999999999999998764 6899999998
Q ss_pred CCCCCC------CCCccEEEECCCCch---hHHHHHhccccCcEEEE
Q 022372 218 RKGWPE------FAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~~~------~~~fD~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi 255 (298)
.+.++. .++||.||.++.... +.+.+.+.|+|||.+++
T Consensus 180 ~e~L~~l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 180 AESLKSMIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred HHHHHHHHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 764321 258999999998754 44788899999999986
No 55
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.42 E-value=1.1e-12 Score=114.86 Aligned_cols=104 Identities=23% Similarity=0.259 Sum_probs=84.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-CCCC--CCCCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-RKGW--PEFAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-~~~~--~~~~~ 226 (298)
.++.+|||+|||+|..+..+++.. +..+|+++|+++++++.|++++...+. +++.++++|. .... .+.++
T Consensus 39 ~~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~------~~v~~~~~d~~~~l~~~~~~~~ 111 (202)
T PRK00121 39 NDAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGL------TNLRLLCGDAVEVLLDMFPDGS 111 (202)
T ss_pred CCCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCC------CCEEEEecCHHHHHHHHcCccc
Confidence 367899999999999999999885 557999999999999999999877543 6899999998 3321 23468
Q ss_pred ccEEEECCCC--------------chhHHHHHhccccCcEEEEEECCC
Q 022372 227 YDAIHVGAAA--------------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 227 fD~Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
||+|+++.+. +.+.+++.+.|||||++++...+.
T Consensus 112 ~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~ 159 (202)
T PRK00121 112 LDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159 (202)
T ss_pred cceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCH
Confidence 9999987542 346789999999999999976553
No 56
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.42 E-value=1.5e-12 Score=111.52 Aligned_cols=99 Identities=22% Similarity=0.201 Sum_probs=80.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..++.+|||+|||+|.++..+++.. + +|+++|+++++++.+++++..++ .+++++.+|..+.. . ++||
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~-~--~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~~d~~~~~-~-~~fD 84 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKG-K--CILTTDINPFAVKELRENAKLNN-------VGLDVVMTDLFKGV-R-GKFD 84 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcC-C--EEEEEECCHHHHHHHHHHHHHcC-------CceEEEEccccccc-C-Cccc
Confidence 4456799999999999999999874 3 89999999999999999987643 35788899986643 2 5899
Q ss_pred EEEECCCCc---------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAP---------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~---------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+++.+.. .+.+++.+.|||||++++....
T Consensus 85 ~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~ 142 (179)
T TIGR00537 85 VILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS 142 (179)
T ss_pred EEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence 999997652 2356778999999999986543
No 57
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.42 E-value=1.6e-12 Score=117.01 Aligned_cols=105 Identities=18% Similarity=0.217 Sum_probs=82.3
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. ..++.+|||+|||+|.++..+++.. .+|+++|+++++++.|+++.. ...++.+|.
T Consensus 31 a~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~~D~s~~~l~~a~~~~~-----------~~~~~~~d~ 94 (251)
T PRK10258 31 ADALLAMLP--QRKFTHVLDAGCGPGWMSRYWRERG---SQVTALDLSPPMLAQARQKDA-----------ADHYLAGDI 94 (251)
T ss_pred HHHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHcC---CeEEEEECCHHHHHHHHhhCC-----------CCCEEEcCc
Confidence 344555554 3456799999999999999988752 699999999999999987642 245788888
Q ss_pred CCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEEC
Q 022372 218 RKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.......++||+|+++.++++ +..++.+.|||||.+++...
T Consensus 95 ~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~ 141 (251)
T PRK10258 95 ESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTL 141 (251)
T ss_pred ccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 765545578999999987643 45788999999999999764
No 58
>PRK08317 hypothetical protein; Provisional
Probab=99.41 E-value=3.9e-12 Score=112.34 Aligned_cols=111 Identities=25% Similarity=0.395 Sum_probs=89.1
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. +.++.+|||+|||+|..+..+++..++.++++++|+++.+++.++++.... ..++.+..+|..
T Consensus 9 ~~~~~~~~--~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-------~~~~~~~~~d~~ 79 (241)
T PRK08317 9 ARTFELLA--VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-------GPNVEFVRGDAD 79 (241)
T ss_pred HHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-------CCceEEEecccc
Confidence 34555555 788899999999999999999998766689999999999999998873221 257899999877
Q ss_pred CCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEEC
Q 022372 219 KGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
......++||+|++...+++ +.+++.+.|||||.+++...
T Consensus 80 ~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 80 GLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred cCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEec
Confidence 64444478999999877643 55889999999999998653
No 59
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.41 E-value=3.6e-12 Score=116.45 Aligned_cols=99 Identities=21% Similarity=0.209 Sum_probs=80.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCC--cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQ--GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~--~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.++.+|||+|||+|+++..+++..+.. ..++|+|+++.+++.|+++. +++.+..+|..+.+...++|
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----------~~~~~~~~d~~~lp~~~~sf 152 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----------PQVTFCVASSHRLPFADQSL 152 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----------CCCeEEEeecccCCCcCCce
Confidence 345789999999999999999875322 37999999999999997653 56788999988765556799
Q ss_pred cEEEECCCCchhHHHHHhccccCcEEEEEECCC
Q 022372 228 DAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 228 D~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|+|++... +...+++.+.|||||++++..+..
T Consensus 153 D~I~~~~~-~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 153 DAIIRIYA-PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred eEEEEecC-CCCHHHHHhhccCCCEEEEEeCCC
Confidence 99998765 456689999999999999976653
No 60
>PLN03075 nicotianamine synthase; Provisional
Probab=99.41 E-value=4e-12 Score=116.75 Aligned_cols=114 Identities=13% Similarity=0.096 Sum_probs=87.4
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCc-HHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH-hccCCccCCCCEEEEEc
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTG-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-SAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG-~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~-~~~~~~l~~~~v~~~~g 215 (298)
...++..+. ..++.+|+|||||.| +.+..+++...++++++++|+++++++.|++.+.. .++. ++++|..+
T Consensus 112 E~~~L~~~~--~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~-----~rV~F~~~ 184 (296)
T PLN03075 112 EFDLLSQHV--NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLS-----KRMFFHTA 184 (296)
T ss_pred HHHHHHHhh--cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCcc-----CCcEEEEC
Confidence 344455554 336789999999976 45566665556888999999999999999999864 4443 68999999
Q ss_pred CCCCCCCCCCCccEEEECCCC-------chhHHHHHhccccCcEEEEEEC
Q 022372 216 DGRKGWPEFAPYDAIHVGAAA-------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 216 D~~~~~~~~~~fD~Ii~~~~~-------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|..+.....+.||+|++.+.. .++.+.+.+.|+|||.+++-.+
T Consensus 185 Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 185 DVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred chhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 998765445789999999421 2466899999999999999653
No 61
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.41 E-value=4e-12 Score=123.56 Aligned_cols=109 Identities=26% Similarity=0.333 Sum_probs=89.1
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
...+. +++|.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++|+.+.+. .+++++.+|+....
T Consensus 245 ~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~------~~v~~~~~D~~~~~ 316 (434)
T PRK14901 245 APLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL------KSIKILAADSRNLL 316 (434)
T ss_pred HHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC------CeEEEEeCChhhcc
Confidence 34454 77899999999999999999999876668999999999999999999988664 57999999987643
Q ss_pred ----CCCCCccEEEECCCC----------------------------chhHHHHHhccccCcEEEEEEC
Q 022372 222 ----PEFAPYDAIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 222 ----~~~~~fD~Ii~~~~~----------------------------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...++||.|+++++. .++.+++.+.|||||+|+....
T Consensus 317 ~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 317 ELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred cccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 223689999998753 1345678899999999997653
No 62
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.40 E-value=1.2e-12 Score=112.67 Aligned_cols=95 Identities=23% Similarity=0.340 Sum_probs=73.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
.-.++||+|||.|.+|..||.++ .+++++|+++.+++.|++++... ++|+++++|....+++ ++||+|
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~~--------~~V~~~~~dvp~~~P~-~~FDLI 110 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAGL--------PHVEWIQADVPEFWPE-GRFDLI 110 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---------SSEEEEES-TTT---S-S-EEEE
T ss_pred ccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCCC--------CCeEEEECcCCCCCCC-CCeeEE
Confidence 33689999999999999999997 69999999999999999998642 6899999999887766 899999
Q ss_pred EECCCCc---------hhHHHHHhccccCcEEEEEE
Q 022372 231 HVGAAAP---------EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 231 i~~~~~~---------~l~~~l~~~LkpGG~Lvi~v 257 (298)
++...+. .+.+.+.+.|+|||.||+-.
T Consensus 111 V~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 111 VLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp EEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 9998752 23466778999999999843
No 63
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.40 E-value=6.4e-12 Score=112.58 Aligned_cols=101 Identities=23% Similarity=0.355 Sum_probs=83.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
.+.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++...+. .+++++.+|..+..+ .++||+|
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~-~~~fD~V 158 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER-PDARVTAVDISPEALAVARKNAARLGL------DNVTFLQSDWFEPLP-GGKFDLI 158 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhccCc-CCceeEE
Confidence 44699999999999999999985 557999999999999999999887554 579999999877543 4789999
Q ss_pred EECCCCc--------------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 231 HVGAAAP--------------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 231 i~~~~~~--------------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+++.+.. .+.+.+.+.|+|||++++..+.
T Consensus 159 i~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~ 219 (251)
T TIGR03534 159 VSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY 219 (251)
T ss_pred EECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence 9987532 2335777899999999998764
No 64
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.40 E-value=2.3e-12 Score=125.62 Aligned_cols=142 Identities=20% Similarity=0.285 Sum_probs=108.9
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
+...+++.+. +.++.+|||+|||+|.++..+++.. .+|+|+|+++++++.|++|+..++. .+++++.+|
T Consensus 285 l~~~vl~~l~--~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~------~~v~~~~~d 353 (443)
T PRK13168 285 MVARALEWLD--PQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGL------DNVTFYHAN 353 (443)
T ss_pred HHHHHHHHhc--CCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEeC
Confidence 3444555554 5678899999999999999999885 6899999999999999999987654 579999999
Q ss_pred CCCCCC----CCCCccEEEECCCCch---hHHHHHhccccCcEEEEEECCCce--eEEEEEEcCCCCeEEEEeeeEEEee
Q 022372 217 GRKGWP----EFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVIPVGNIFQ--DLKVVDKNQDGSLSIWSETSVRYVP 287 (298)
Q Consensus 217 ~~~~~~----~~~~fD~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi~v~~~~q--~~~~~~~~~~g~~~~~~l~~v~fvP 287 (298)
+.+... ..++||+|+++++... +.+.+. .++|++.++++++.... ++..+. ++.++.+.+.++.++|
T Consensus 354 ~~~~l~~~~~~~~~fD~Vi~dPPr~g~~~~~~~l~-~~~~~~ivyvSCnp~tlaRDl~~L~---~~gY~l~~i~~~DmFP 429 (443)
T PRK13168 354 LEEDFTDQPWALGGFDKVLLDPPRAGAAEVMQALA-KLGPKRIVYVSCNPATLARDAGVLV---EAGYRLKRAGMLDMFP 429 (443)
T ss_pred hHHhhhhhhhhcCCCCEEEECcCCcChHHHHHHHH-hcCCCeEEEEEeChHHhhccHHHHh---hCCcEEEEEEEeccCC
Confidence 875432 2357999999988653 333333 36899999998876432 233332 3349999999999999
Q ss_pred cccchh
Q 022372 288 LTSRDA 293 (298)
Q Consensus 288 l~~~~~ 293 (298)
-|...+
T Consensus 430 ~T~HvE 435 (443)
T PRK13168 430 HTGHVE 435 (443)
T ss_pred CCCcEE
Confidence 998876
No 65
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.39 E-value=3.1e-12 Score=125.58 Aligned_cols=107 Identities=23% Similarity=0.322 Sum_probs=86.7
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+++.+. ++++.+|||+|||+|..+..+++..+ .+|+|+|+++++++.|+++..... .++++..+|...
T Consensus 257 ~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvDiS~~~l~~A~~~~~~~~-------~~v~~~~~d~~~ 325 (475)
T PLN02336 257 EFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENFD--VHVVGIDLSVNMISFALERAIGRK-------CSVEFEVADCTK 325 (475)
T ss_pred HHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhcC--CEEEEEECCHHHHHHHHHHhhcCC-------CceEEEEcCccc
Confidence 3455554 57788999999999999999998753 689999999999999998764311 478999999877
Q ss_pred CCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v 257 (298)
...+.++||+|++..++.+ +.+++.+.|||||++++..
T Consensus 326 ~~~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 326 KTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CCCCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEE
Confidence 5544478999999988754 4578999999999999864
No 66
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.39 E-value=1.3e-11 Score=118.02 Aligned_cols=135 Identities=18% Similarity=0.230 Sum_probs=100.1
Q ss_pred CCCCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHH
Q 022372 117 PPYVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNI 196 (298)
Q Consensus 117 ~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~ 196 (298)
..|.+..+.+..+..+.+|..... ++.+...++++.+|||+|||+|.++..+++.. +..+|+++|+|+++++.|++|+
T Consensus 218 ~~F~G~~f~V~p~vLIPRpeTE~L-Ve~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa 295 (423)
T PRK14966 218 REFYGRRFAVNPNVLIPRPETEHL-VEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNA 295 (423)
T ss_pred eeecCcEEEeCCCccCCCccHHHH-HHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH
Confidence 444555666777777777764443 33332235567799999999999999999874 5579999999999999999998
Q ss_pred HHhccCCccCCCCEEEEEcCCCCCC-CCCCCccEEEECCCCc-------------------------------hhHHHHH
Q 022372 197 EKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYDAIHVGAAAP-------------------------------EIPQALI 244 (298)
Q Consensus 197 ~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~fD~Ii~~~~~~-------------------------------~l~~~l~ 244 (298)
...+ .+++++++|..+.. +..++||+|+++++.- .+.+.+.
T Consensus 296 ~~~g-------~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~ 368 (423)
T PRK14966 296 ADLG-------ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAP 368 (423)
T ss_pred HHcC-------CcEEEEEcchhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHH
Confidence 7643 37899999986532 2335799999998641 1224455
Q ss_pred hccccCcEEEEEECCC
Q 022372 245 DQLKPGGRMVIPVGNI 260 (298)
Q Consensus 245 ~~LkpGG~Lvi~v~~~ 260 (298)
+.|+|||.+++.++..
T Consensus 369 ~~LkpgG~lilEiG~~ 384 (423)
T PRK14966 369 DRLAEGGFLLLEHGFD 384 (423)
T ss_pred HhcCCCcEEEEEECcc
Confidence 7899999999988763
No 67
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.39 E-value=5.4e-12 Score=116.07 Aligned_cols=133 Identities=21% Similarity=0.297 Sum_probs=96.5
Q ss_pred CCCccccCCCccChHHHHHHHHHHHHcc--CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 121 DSPMAIGYNATISAPHMHATCLQLLEEN--LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 121 d~~~~~g~~~~is~p~~~~~~l~~L~~~--l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
+..+.+..+..+..|.....+...+... ..++.+|||+|||+|.++..++... +..+|+++|+++++++.|++|+..
T Consensus 82 g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~-~~~~v~avDis~~al~~a~~n~~~ 160 (284)
T TIGR00536 82 GLEFFVNEHVLIPRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEF-PNAEVIAVDISPDALAVAEENAEK 160 (284)
T ss_pred CeEEEECCCCcCCCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHH
Confidence 4445555566666555333322222211 1223699999999999999999985 557999999999999999999987
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc-------------------------------hhHHHHHhcc
Q 022372 199 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-------------------------------EIPQALIDQL 247 (298)
Q Consensus 199 ~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~-------------------------------~l~~~l~~~L 247 (298)
.+.. .+++++.+|..+..+. .+||+|+++++.. .+.+.+.+.|
T Consensus 161 ~~~~-----~~v~~~~~d~~~~~~~-~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L 234 (284)
T TIGR00536 161 NQLE-----HRVEFIQSNLFEPLAG-QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYL 234 (284)
T ss_pred cCCC-----CcEEEEECchhccCcC-CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhc
Confidence 6542 4699999998775543 4799999986531 1235567799
Q ss_pred ccCcEEEEEECCC
Q 022372 248 KPGGRMVIPVGNI 260 (298)
Q Consensus 248 kpGG~Lvi~v~~~ 260 (298)
+|||++++.++..
T Consensus 235 ~~gG~l~~e~g~~ 247 (284)
T TIGR00536 235 KPNGFLVCEIGNW 247 (284)
T ss_pred cCCCEEEEEECcc
Confidence 9999999999864
No 68
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.38 E-value=4.3e-12 Score=118.71 Aligned_cols=106 Identities=20% Similarity=0.207 Sum_probs=80.9
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
++..+. ..+|.+|||||||+|+.+..+++. ++ ..|+|+|.++.++..++......+. ..+++++.+|..+.
T Consensus 114 l~~~l~--~l~g~~VLDIGCG~G~~~~~la~~-g~-~~V~GiD~S~~~l~q~~a~~~~~~~-----~~~i~~~~~d~e~l 184 (322)
T PRK15068 114 VLPHLS--PLKGRTVLDVGCGNGYHMWRMLGA-GA-KLVVGIDPSQLFLCQFEAVRKLLGN-----DQRAHLLPLGIEQL 184 (322)
T ss_pred HHHhhC--CCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHhcCC-----CCCeEEEeCCHHHC
Confidence 344443 346789999999999999999987 44 4799999999998765543322111 15799999988765
Q ss_pred CCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~ 256 (298)
.. .++||+|++..++++ +.+++.+.|||||.+++.
T Consensus 185 p~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 185 PA-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred CC-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 44 578999999988754 447899999999999985
No 69
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.38 E-value=6.8e-13 Score=102.98 Aligned_cols=90 Identities=24% Similarity=0.409 Sum_probs=69.9
Q ss_pred EEEEcCCCcHHHHHHHHHc--CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022372 155 ALDIGSGTGYLTACFALMV--GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 232 (298)
Q Consensus 155 VLDiG~GsG~~t~~La~~~--g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~ 232 (298)
|||+|||+|..+..+++.+ ++..+++++|+++++++.++++....+ .+++++++|..+.....++||+|++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~-------~~~~~~~~D~~~l~~~~~~~D~v~~ 73 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDG-------PKVRFVQADARDLPFSDGKFDLVVC 73 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTT-------TTSEEEESCTTCHHHHSSSEEEEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcC-------CceEEEECCHhHCcccCCCeeEEEE
Confidence 7999999999999999986 344799999999999999999987633 3789999999875445579999999
Q ss_pred C-CCCc--------hhHHHHHhccccCc
Q 022372 233 G-AAAP--------EIPQALIDQLKPGG 251 (298)
Q Consensus 233 ~-~~~~--------~l~~~l~~~LkpGG 251 (298)
. .++. .+.+++.+.|||||
T Consensus 74 ~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 74 SGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp -TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred cCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4 4353 34478889999998
No 70
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.38 E-value=3.3e-12 Score=111.08 Aligned_cols=103 Identities=20% Similarity=0.262 Sum_probs=85.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---CCCCCc
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFAPY 227 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~---~~~~~f 227 (298)
.+.++||+|||+|.++..+++.. |+..++|+|+++++++.|++++...++ .|++++++|+.+.+ .+.+.+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l------~ni~~i~~d~~~~~~~~~~~~~~ 88 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGL------KNLHVLCGDANELLDKFFPDGSL 88 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCC------CCEEEEccCHHHHHHhhCCCCce
Confidence 45699999999999999999984 678999999999999999999877544 58999999987532 333589
Q ss_pred cEEEECCCCc--------------hhHHHHHhccccCcEEEEEECCC
Q 022372 228 DAIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 228 D~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|.|+++.+.+ .+.+.+.+.|||||.+++.....
T Consensus 89 d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 89 SKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred eEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 9999986532 36788999999999999976653
No 71
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.37 E-value=7e-12 Score=119.93 Aligned_cols=103 Identities=26% Similarity=0.257 Sum_probs=82.6
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.+++.+. ++++.+|||+|||+|.++..+++..+ .+|+|+|+++++++.|+++... .++++..+|...
T Consensus 158 ~l~~~l~--l~~g~rVLDIGcG~G~~a~~la~~~g--~~V~giDlS~~~l~~A~~~~~~---------l~v~~~~~D~~~ 224 (383)
T PRK11705 158 LICRKLQ--LKPGMRVLDIGCGWGGLARYAAEHYG--VSVVGVTISAEQQKLAQERCAG---------LPVEIRLQDYRD 224 (383)
T ss_pred HHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHCC--CEEEEEeCCHHHHHHHHHHhcc---------CeEEEEECchhh
Confidence 3445554 78999999999999999999998753 5899999999999999988742 247788888754
Q ss_pred CCCCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEEEC
Q 022372 220 GWPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
. .++||.|++...+++ +.+.+.+.|||||++++...
T Consensus 225 l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 225 L---NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred c---CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence 3 368999998877654 34778899999999998653
No 72
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.37 E-value=6.8e-12 Score=121.78 Aligned_cols=105 Identities=21% Similarity=0.295 Sum_probs=87.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~f 227 (298)
+++|.+|||+|||+|..|..+++..++.++|+++|+++.+++.+++++++.+. .++++..+|..... ...++|
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~------~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL------SSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEECchhhhhhhhhccC
Confidence 78899999999999999999999887778999999999999999999988654 57899999987542 123679
Q ss_pred cEEEECCCCc----------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|.|+++++.. ++..++.+.|||||+++++...
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 9999988751 1235678899999999997754
No 73
>PRK14967 putative methyltransferase; Provisional
Probab=99.37 E-value=1.3e-11 Score=109.50 Aligned_cols=101 Identities=26% Similarity=0.379 Sum_probs=81.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+.++.+|||+|||+|.++..+++. +. .+++++|+++.+++.+++|+...+ .++.++.+|..+..+ .++||
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~-~~v~~vD~s~~~l~~a~~n~~~~~-------~~~~~~~~d~~~~~~-~~~fD 103 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GA-GSVTAVDISRRAVRSARLNALLAG-------VDVDVRRGDWARAVE-FRPFD 103 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CC-CeEEEEECCHHHHHHHHHHHHHhC-------CeeEEEECchhhhcc-CCCee
Confidence 677899999999999999999886 32 589999999999999999987654 257888888876443 36899
Q ss_pred EEEECCCCc---------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAP---------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~---------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+++.+.. .+.+++.+.|||||++++...+
T Consensus 104 ~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 104 VVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred EEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 999986532 2346678999999999985544
No 74
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.37 E-value=8.3e-12 Score=121.72 Aligned_cols=110 Identities=24% Similarity=0.311 Sum_probs=89.6
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
....+. +.+|.+|||+|||+|+.+..+++..+..++|+++|+++.+++.+++++++.+. .+++++.+|+...
T Consensus 242 ~~~~l~--~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~------~~v~~~~~Da~~~ 313 (445)
T PRK14904 242 ACLLLN--PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI------TIIETIEGDARSF 313 (445)
T ss_pred HHHhcC--CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC------CeEEEEeCccccc
Confidence 334444 67889999999999999999998876667999999999999999999988654 5799999998765
Q ss_pred CCCCCCccEEEECCCC----------------------------chhHHHHHhccccCcEEEEEECC
Q 022372 221 WPEFAPYDAIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~----------------------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+ .++||+|+++++. ..+..++.+.|||||++++....
T Consensus 314 ~~-~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 314 SP-EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred cc-CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 43 3689999987653 12456778899999999997743
No 75
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.36 E-value=1.4e-11 Score=115.57 Aligned_cols=116 Identities=23% Similarity=0.250 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
.|.+...++.... .+++.+|||+|||+|.++..++.. + .+++|+|+++.+++.|++|++..+. .++++.
T Consensus 167 ~~~la~~~~~l~~--~~~g~~vLDp~cGtG~~lieaa~~-~--~~v~g~Di~~~~~~~a~~nl~~~g~------~~i~~~ 235 (329)
T TIGR01177 167 DPKLARAMVNLAR--VTEGDRVLDPFCGTGGFLIEAGLM-G--AKVIGCDIDWKMVAGARINLEHYGI------EDFFVK 235 (329)
T ss_pred CHHHHHHHHHHhC--CCCcCEEEECCCCCCHHHHHHHHh-C--CeEEEEcCCHHHHHHHHHHHHHhCC------CCCeEE
Confidence 4555566666554 788999999999999998887765 3 6899999999999999999988665 358899
Q ss_pred EcCCCCCCCCCCCccEEEECCCC---------------chhHHHHHhccccCcEEEEEECCC
Q 022372 214 VGDGRKGWPEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 214 ~gD~~~~~~~~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.+|..+.....++||+|+++++. ..+.+++.+.|||||++++.+++.
T Consensus 236 ~~D~~~l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 236 RGDATKLPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred ecchhcCCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 99998755445789999998753 234467889999999999988764
No 76
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.36 E-value=7.3e-12 Score=111.04 Aligned_cols=111 Identities=21% Similarity=0.245 Sum_probs=92.7
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCC-----cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQ-----GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~-----~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
....|. ..+++++||+++|||.++..+.+.++.. ++|+..|++++|++.++++..+.++. ...++.++.+
T Consensus 92 ~v~~L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~---~~~~~~w~~~ 166 (296)
T KOG1540|consen 92 FVSKLG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLK---ASSRVEWVEG 166 (296)
T ss_pred hhhccC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCC---cCCceEEEeC
Confidence 455554 6778999999999999999999987553 79999999999999999998775442 2345999999
Q ss_pred CCCCCCCCCCCccEEEECCCCc------hhHHHHHhccccCcEEEEE
Q 022372 216 DGRKGWPEFAPYDAIHVGAAAP------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 216 D~~~~~~~~~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~ 256 (298)
|+.+.+.++++||.......++ ...++++|+|||||++.+-
T Consensus 167 dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cL 213 (296)
T KOG1540|consen 167 DAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCL 213 (296)
T ss_pred CcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 9999888889999999988874 3458999999999999873
No 77
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.36 E-value=1.4e-12 Score=116.01 Aligned_cols=99 Identities=25% Similarity=0.399 Sum_probs=77.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC---CEEEEEcCCCCCCCCCCCcc
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG---SLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~---~v~~~~gD~~~~~~~~~~fD 228 (298)
|++|||+|||+|.++..||+.. ..|+|+|.++++++.|+++...... +... ++++...++... .+.||
T Consensus 90 g~~ilDvGCGgGLLSepLArlg---a~V~GID~s~~~V~vA~~h~~~dP~---~~~~~~y~l~~~~~~~E~~---~~~fD 160 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLG---AQVTGIDASDDMVEVANEHKKMDPV---LEGAIAYRLEYEDTDVEGL---TGKFD 160 (282)
T ss_pred CceEEEeccCccccchhhHhhC---CeeEeecccHHHHHHHHHhhhcCch---hccccceeeehhhcchhhc---ccccc
Confidence 5889999999999999999985 7999999999999999998433322 2211 355555555432 24599
Q ss_pred EEEECCCCchh--H----HHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAPEI--P----QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~~l--~----~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+|..+++|+ + +.+.+.|||||+|+++.-+
T Consensus 161 aVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittin 197 (282)
T KOG1270|consen 161 AVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTIN 197 (282)
T ss_pred eeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehh
Confidence 99999999887 3 5677899999999997644
No 78
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.36 E-value=7.7e-12 Score=116.40 Aligned_cols=101 Identities=16% Similarity=0.112 Sum_probs=76.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..+|++|||+|||+|+++..++.. ++ ..|+|+|.++.++..++..-..... ..++.+...+..+..+. .+||
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~-g~-~~v~GiDpS~~ml~q~~~~~~~~~~-----~~~v~~~~~~ie~lp~~-~~FD 190 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGH-GA-KSLVGIDPTVLFLCQFEAVRKLLDN-----DKRAILEPLGIEQLHEL-YAFD 190 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHc-CC-CEEEEEcCCHHHHHHHHHHHHHhcc-----CCCeEEEECCHHHCCCC-CCcC
Confidence 466889999999999999888876 44 4899999999998775432222111 14677877776554333 5899
Q ss_pred EEEECCCCch------hHHHHHhccccCcEEEEEE
Q 022372 229 AIHVGAAAPE------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 229 ~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v 257 (298)
+|++..++.+ ..+++.+.|||||.|++..
T Consensus 191 ~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvlet 225 (314)
T TIGR00452 191 TVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLET 225 (314)
T ss_pred EEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEE
Confidence 9999998764 4478999999999999853
No 79
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.4e-11 Score=112.54 Aligned_cols=109 Identities=26% Similarity=0.288 Sum_probs=89.3
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ...+.+|||+|||.|.+++.+++. .|..+++-+|++..+++.|++|+..++. .+..+..+|..
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~-~p~~~vtmvDvn~~Av~~ar~Nl~~N~~------~~~~v~~s~~~ 218 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKK-SPQAKLTLVDVNARAVESARKNLAANGV------ENTEVWASNLY 218 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHh-CCCCeEEEEecCHHHHHHHHHhHHHcCC------CccEEEEeccc
Confidence 34566665 445569999999999999999999 4678999999999999999999998765 34467778877
Q ss_pred CCCCCCCCccEEEECCCCc-----------hhHHHHHhccccCcEEEEEEC
Q 022372 219 KGWPEFAPYDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+...+ +||.|++|++++ ++.++..+.|++||.|.+...
T Consensus 219 ~~v~~--kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 219 EPVEG--KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred ccccc--cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 66554 899999999984 455777899999999999554
No 80
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.35 E-value=5.6e-12 Score=111.40 Aligned_cols=98 Identities=21% Similarity=0.233 Sum_probs=81.5
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 232 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~ 232 (298)
++|||+|||+|..+..+++.. +..+|+|+|+++++++.+++++...++. +++++..+|......+ ++||+|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~-~~~~v~gid~s~~~~~~a~~~~~~~gl~-----~~i~~~~~d~~~~~~~-~~fD~I~~ 73 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERH-PHLQLHGYTISPEQAEVGRERIRALGLQ-----GRIRIFYRDSAKDPFP-DTYDLVFG 73 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCC-----cceEEEecccccCCCC-CCCCEeeh
Confidence 379999999999999999885 4478999999999999999998876654 6889999998654333 58999998
Q ss_pred CCCCc------hhHHHHHhccccCcEEEEEE
Q 022372 233 GAAAP------EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 233 ~~~~~------~l~~~l~~~LkpGG~Lvi~v 257 (298)
...++ .+.+++.+.|||||++++..
T Consensus 74 ~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~ 104 (224)
T smart00828 74 FEVIHHIKDKMDLFSNISRHLKDGGHLVLAD 104 (224)
T ss_pred HHHHHhCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 77654 34578999999999999854
No 81
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.35 E-value=1.5e-11 Score=115.89 Aligned_cols=109 Identities=19% Similarity=0.212 Sum_probs=85.2
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. .....+|||+|||+|.++..+++. .+..+|+++|+++.+++.|+++++.++. ..+++.+|..
T Consensus 186 ~lLl~~l~--~~~~g~VLDlGCG~G~ls~~la~~-~p~~~v~~vDis~~Al~~A~~nl~~n~l-------~~~~~~~D~~ 255 (342)
T PRK09489 186 QLLLSTLT--PHTKGKVLDVGCGAGVLSAVLARH-SPKIRLTLSDVSAAALESSRATLAANGL-------EGEVFASNVF 255 (342)
T ss_pred HHHHHhcc--ccCCCeEEEeccCcCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCC-------CCEEEEcccc
Confidence 34455554 233458999999999999999998 4667999999999999999999988653 2466777876
Q ss_pred CCCCCCCCccEEEECCCCc-----------hhHHHHHhccccCcEEEEEECC
Q 022372 219 KGWPEFAPYDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
... .++||+|+++.+++ .+.+++.+.|||||.+++..+.
T Consensus 256 ~~~--~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 256 SDI--KGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred ccc--CCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 543 36899999998874 3346778899999999985544
No 82
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.35 E-value=1.2e-11 Score=109.45 Aligned_cols=110 Identities=26% Similarity=0.309 Sum_probs=86.2
Q ss_pred HHHHHHHHHccC-CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 138 HATCLQLLEENL-KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 138 ~~~~l~~L~~~l-~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
...+++.+.... ..+.+|||+|||+|..+..+++.. +..+++++|+++++++.++++.. +++.++.+|
T Consensus 20 ~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----------~~~~~~~~d 88 (240)
T TIGR02072 20 AKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----------ENVQFICGD 88 (240)
T ss_pred HHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----------CCCeEEecc
Confidence 444555554221 345799999999999999999984 66789999999999999887642 367889999
Q ss_pred CCCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEEC
Q 022372 217 GRKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
........++||+|++..++++ +.+++.+.|||||.+++...
T Consensus 89 ~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 89 AEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred hhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 8876545578999999987653 45788999999999998654
No 83
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.34 E-value=1.9e-11 Score=108.31 Aligned_cols=112 Identities=25% Similarity=0.426 Sum_probs=88.6
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...++..+. ..++.+|||+|||+|..+..+++..++..+++++|+++.+++.+++++...+.. .++.++.+|.
T Consensus 40 ~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~-----~~~~~~~~d~ 112 (239)
T PRK00216 40 RRKTIKWLG--VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLS-----GNVEFVQGDA 112 (239)
T ss_pred HHHHHHHhC--CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccc-----cCeEEEeccc
Confidence 344555554 557789999999999999999998643679999999999999999987654322 5788999998
Q ss_pred CCCCCCCCCccEEEECCCCc------hhHHHHHhccccCcEEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAAP------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~ 256 (298)
.+.....++||+|++...++ .+.+++.+.|+|||++++.
T Consensus 113 ~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~ 157 (239)
T PRK00216 113 EALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVIL 157 (239)
T ss_pred ccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEE
Confidence 77554457899999876653 3457889999999999874
No 84
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.34 E-value=1.5e-11 Score=121.49 Aligned_cols=136 Identities=12% Similarity=0.201 Sum_probs=102.2
Q ss_pred CCCCCCCccccCCCccChHHHHHHHHHHHHcc-------------------------CCCCCEEEEEcCCCcHHHHHHHH
Q 022372 117 PPYVDSPMAIGYNATISAPHMHATCLQLLEEN-------------------------LKPGMHALDIGSGTGYLTACFAL 171 (298)
Q Consensus 117 ~aY~d~~~~~g~~~~is~p~~~~~~l~~L~~~-------------------------l~~g~~VLDiG~GsG~~t~~La~ 171 (298)
..|....+.++.+..|++|.....+-..+... ..++.+|||+|||+|.++..+++
T Consensus 79 ~~F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~ 158 (506)
T PRK01544 79 KEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLC 158 (506)
T ss_pred CEEcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHH
Confidence 45556778888899999988554433222210 11346899999999999999998
Q ss_pred HcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc--------------
Q 022372 172 MVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP-------------- 237 (298)
Q Consensus 172 ~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~-------------- 237 (298)
.. +..+|+++|+|+.+++.|++|+..+++. ++++++.+|...... .++||+|+++++.-
T Consensus 159 ~~-p~~~v~avDis~~al~~A~~N~~~~~l~-----~~v~~~~~D~~~~~~-~~~fDlIvsNPPYi~~~~~~~l~~~v~~ 231 (506)
T PRK01544 159 EL-PNANVIATDISLDAIEVAKSNAIKYEVT-----DRIQIIHSNWFENIE-KQKFDFIVSNPPYISHSEKSEMAIETIN 231 (506)
T ss_pred HC-CCCeEEEEECCHHHHHHHHHHHHHcCCc-----cceeeeecchhhhCc-CCCccEEEECCCCCCchhhhhcCchhhc
Confidence 75 5579999999999999999999876643 578999999866443 35899999987531
Q ss_pred ------------------hhHHHHHhccccCcEEEEEECC
Q 022372 238 ------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 238 ------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+.+.+.+.|+|||.+++.++.
T Consensus 232 ~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~ 271 (506)
T PRK01544 232 YEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF 271 (506)
T ss_pred cCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence 1224566799999999998865
No 85
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.34 E-value=2.5e-11 Score=110.41 Aligned_cols=129 Identities=22% Similarity=0.334 Sum_probs=93.4
Q ss_pred CCCccccCCCccChHHHH---HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Q 022372 121 DSPMAIGYNATISAPHMH---ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE 197 (298)
Q Consensus 121 d~~~~~g~~~~is~p~~~---~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~ 197 (298)
+..+..+.+..++.|... ..++..+. ..++.+|||+|||+|..+..+++.. +..+++++|+++.+++.|++++.
T Consensus 77 ~~~~~~~~~~lipr~~te~l~~~~~~~~~--~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 77 GLDFKVSPGVLIPRPETEELVEWALEALL--LKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred CcEEEECCCceeCCCCcHHHHHHHHHhcc--ccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH
Confidence 344445555555554422 22222222 4567899999999999999999985 56899999999999999999987
Q ss_pred HhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc--------------------------------hhHHHHHh
Q 022372 198 KSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP--------------------------------EIPQALID 245 (298)
Q Consensus 198 ~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~--------------------------------~l~~~l~~ 245 (298)
... ..++.++.+|...... .++||+|+++.+.. .+.+++.+
T Consensus 154 -~~~-----~~~i~~~~~d~~~~~~-~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~ 226 (275)
T PRK09328 154 -HGL-----GARVEFLQGDWFEPLP-GGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPR 226 (275)
T ss_pred -hCC-----CCcEEEEEccccCcCC-CCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHH
Confidence 221 2689999999876544 36899999986541 12245558
Q ss_pred ccccCcEEEEEECC
Q 022372 246 QLKPGGRMVIPVGN 259 (298)
Q Consensus 246 ~LkpGG~Lvi~v~~ 259 (298)
.|||||++++.++.
T Consensus 227 ~Lk~gG~l~~e~g~ 240 (275)
T PRK09328 227 YLKPGGWLLLEIGY 240 (275)
T ss_pred hcccCCEEEEEECc
Confidence 99999999998765
No 86
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.33 E-value=1e-11 Score=114.29 Aligned_cols=94 Identities=22% Similarity=0.235 Sum_probs=76.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
++.+|||+|||+|..+..+++. + .+|+|+|+++.+++.++++....++ ++++...|...... .++||+|
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~-g--~~V~avD~s~~ai~~~~~~~~~~~l-------~v~~~~~D~~~~~~-~~~fD~I 188 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL-G--FDVTAVDINQQSLENLQEIAEKENL-------NIRTGLYDINSASI-QEEYDFI 188 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHHcCC-------ceEEEEechhcccc-cCCccEE
Confidence 3459999999999999999986 3 6999999999999999998876432 67888888765433 4789999
Q ss_pred EECCCCc--------hhHHHHHhccccCcEEEE
Q 022372 231 HVGAAAP--------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 231 i~~~~~~--------~l~~~l~~~LkpGG~Lvi 255 (298)
++..+++ .+.+++.+.|||||++++
T Consensus 189 ~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~ 221 (287)
T PRK12335 189 LSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLI 221 (287)
T ss_pred EEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 9988764 245788899999999666
No 87
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.33 E-value=6.5e-11 Score=114.87 Aligned_cols=108 Identities=28% Similarity=0.357 Sum_probs=86.4
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
+...+. +.+|.+|||+|||+|..+..+++.. +.++|+++|+++.+++.+++++.+.+. +++++.+|+...
T Consensus 236 ~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~-~~~~v~a~D~s~~~l~~~~~n~~~~g~-------~~~~~~~D~~~~ 305 (427)
T PRK10901 236 AATLLA--PQNGERVLDACAAPGGKTAHILELA-PQAQVVALDIDAQRLERVRENLQRLGL-------KATVIVGDARDP 305 (427)
T ss_pred HHHHcC--CCCCCEEEEeCCCCChHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHcCC-------CeEEEEcCcccc
Confidence 344554 7789999999999999999999986 337999999999999999999988653 367899998753
Q ss_pred C--CCCCCccEEEECCCCc----------------------------hhHHHHHhccccCcEEEEEEC
Q 022372 221 W--PEFAPYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 ~--~~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
. ...++||.|+++++.. .+.+.+.+.|||||++++...
T Consensus 306 ~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 306 AQWWDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred hhhcccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 2 2236799999887642 244677889999999998664
No 88
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.33 E-value=9.8e-12 Score=111.92 Aligned_cols=112 Identities=23% Similarity=0.295 Sum_probs=92.7
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+.++..+.. ..+..+|||||+++||.+..+|+.++++++++++|.+++..+.|++++++.++. ++|+++.|++
T Consensus 67 ~g~lL~~l~~-~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~-----~~I~~~~G~a 140 (247)
T PLN02589 67 EGQFLNMLLK-LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVA-----HKIDFREGPA 140 (247)
T ss_pred HHHHHHHHHH-HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-----CceEEEeccH
Confidence 4555666542 445579999999999999999998877899999999999999999999998765 7999999998
Q ss_pred CCCCCC-------CCCccEEEECCCCchhH---HHHHhccccCcEEEE
Q 022372 218 RKGWPE-------FAPYDAIHVGAAAPEIP---QALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~~~-------~~~fD~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi 255 (298)
.+..+. .++||.||.++.....+ +.+.+.|+|||.+++
T Consensus 141 ~e~L~~l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 141 LPVLDQMIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HHHHHHHHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCCeEEEE
Confidence 764322 26899999999876544 677899999999886
No 89
>PRK14968 putative methyltransferase; Provisional
Probab=99.32 E-value=6.2e-11 Score=101.38 Aligned_cols=111 Identities=22% Similarity=0.261 Sum_probs=86.6
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ..++.+|||+|||+|+.+..+++. + .+++++|+++++++.+++++..++.. ..++.++.+|..
T Consensus 13 ~~l~~~~~--~~~~~~vLd~G~G~G~~~~~l~~~-~--~~v~~~D~s~~~~~~a~~~~~~~~~~----~~~~~~~~~d~~ 83 (188)
T PRK14968 13 FLLAENAV--DKKGDRVLEVGTGSGIVAIVAAKN-G--KKVVGVDINPYAVECAKCNAKLNNIR----NNGVEVIRSDLF 83 (188)
T ss_pred HHHHHhhh--ccCCCEEEEEccccCHHHHHHHhh-c--ceEEEEECCHHHHHHHHHHHHHcCCC----CcceEEEecccc
Confidence 33445554 467889999999999999999987 3 79999999999999999998776542 112888899987
Q ss_pred CCCCCCCCccEEEECCCCc---------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 219 KGWPEFAPYDAIHVGAAAP---------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~---------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+...+ ..||+|+++.+.. .+.+++.+.|||||.+++.++.
T Consensus 84 ~~~~~-~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 84 EPFRG-DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred ccccc-cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 76544 4899999886542 2457788999999999887654
No 90
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.32 E-value=1.8e-11 Score=114.28 Aligned_cols=129 Identities=16% Similarity=0.086 Sum_probs=101.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCccE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD~ 229 (298)
++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|+++++.++. ++++++.+|..+... ..+.||+
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~---~~V~gvD~s~~av~~A~~n~~~~~l------~~v~~~~~D~~~~~~~~~~~~D~ 243 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG---MQLTGIEISAEAIACAKQSAAELGL------TNVQFQALDSTQFATAQGEVPDL 243 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC---CEEEEEeCCHHHHHHHHHHHHHcCC------CceEEEEcCHHHHHHhcCCCCeE
Confidence 56899999999999999999863 6899999999999999999988654 589999999875432 2247999
Q ss_pred EEECCCCchhHH---HHHhccccCcEEEEEECCCc--eeEEEEEEcCCCCeEEEEeeeEEEeecccchh
Q 022372 230 IHVGAAAPEIPQ---ALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293 (298)
Q Consensus 230 Ii~~~~~~~l~~---~l~~~LkpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~ 293 (298)
|+++++-..+.. +....++|++.++++.+... ..+..+ +.++.+.+.++..+|.|...+
T Consensus 244 Vv~dPPr~G~~~~~~~~l~~~~~~~ivyvsc~p~t~~rd~~~l-----~~y~~~~~~~~DmFP~T~HvE 307 (315)
T PRK03522 244 VLVNPPRRGIGKELCDYLSQMAPRFILYSSCNAQTMAKDLAHL-----PGYRIERVQLFDMFPHTAHYE 307 (315)
T ss_pred EEECCCCCCccHHHHHHHHHcCCCeEEEEECCcccchhHHhhc-----cCcEEEEEEEeccCCCCCeEE
Confidence 999988654433 33445678888888777643 223333 359999999999999998876
No 91
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.32 E-value=1.5e-11 Score=115.42 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=80.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
.++.+|||+|||+|..+..+++.. +..+|+++|.++++++.|+++... .+++++.+|..+...+.++||+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~-~~~~VtgVD~S~~mL~~A~~k~~~---------~~i~~i~gD~e~lp~~~~sFDv 181 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV-DAKNVTILDQSPHQLAKAKQKEPL---------KECKIIEGDAEDLPFPTDYADR 181 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhhhc---------cCCeEEeccHHhCCCCCCceeE
Confidence 467899999999999999998876 336899999999999999987532 4678899998765445578999
Q ss_pred EEECCCCch------hHHHHHhccccCcEEEEE
Q 022372 230 IHVGAAAPE------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 230 Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~ 256 (298)
|++..++++ +.+++.+.|||||++++.
T Consensus 182 VIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 182 YVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred EEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 999887643 457899999999999874
No 92
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=2.4e-11 Score=118.44 Aligned_cols=108 Identities=23% Similarity=0.269 Sum_probs=87.6
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
...+. ++++.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++|+.+.+. .+++++.+|+....
T Consensus 243 ~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~------~~v~~~~~D~~~~~ 314 (444)
T PRK14902 243 APALD--PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL------TNIETKALDARKVH 314 (444)
T ss_pred HHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCCccccc
Confidence 33444 67889999999999999999999876668999999999999999999988654 46999999987643
Q ss_pred CC-CCCccEEEECCCCc----------------------------hhHHHHHhccccCcEEEEEE
Q 022372 222 PE-FAPYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 222 ~~-~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v 257 (298)
.. .++||+|+++++.. .+.+.+.+.|||||+++.+.
T Consensus 315 ~~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 315 EKFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred chhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 21 26899999987631 24567788999999999754
No 93
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.31 E-value=1.3e-11 Score=110.46 Aligned_cols=114 Identities=25% Similarity=0.312 Sum_probs=91.1
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
-+-++.... ......+|||+|||+|.++..+|++. +..++++||+++++.+.|+++++.+++. ++++++++|.
T Consensus 32 DaiLL~~~~-~~~~~~~IlDlGaG~G~l~L~la~r~-~~a~I~~VEiq~~~a~~A~~nv~ln~l~-----~ri~v~~~Di 104 (248)
T COG4123 32 DAILLAAFA-PVPKKGRILDLGAGNGALGLLLAQRT-EKAKIVGVEIQEEAAEMAQRNVALNPLE-----ERIQVIEADI 104 (248)
T ss_pred HHHHHHhhc-ccccCCeEEEecCCcCHHHHHHhccC-CCCcEEEEEeCHHHHHHHHHHHHhCcch-----hceeEehhhH
Confidence 344555554 24457899999999999999999985 4489999999999999999999988776 8999999999
Q ss_pred CCCCCC--CCCccEEEECCCC------------------------chhHHHHHhccccCcEEEEEEC
Q 022372 218 RKGWPE--FAPYDAIHVGAAA------------------------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 218 ~~~~~~--~~~fD~Ii~~~~~------------------------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.+.... ..+||+|+||++. +.+.+...+.|||||.+.+..+
T Consensus 105 ~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 105 KEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred HHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence 875432 2479999999985 1223556789999999999554
No 94
>PTZ00146 fibrillarin; Provisional
Probab=99.31 E-value=2.1e-11 Score=111.69 Aligned_cols=102 Identities=24% Similarity=0.318 Sum_probs=80.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFA 225 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~---~~~~ 225 (298)
++++++|||+|||+|+++..+++.+++.++|+++|+++.+.+...+..... .|+.++.+|..... ...+
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--------~NI~~I~~Da~~p~~y~~~~~ 201 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--------PNIVPIIEDARYPQKYRMLVP 201 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--------CCCEEEECCccChhhhhcccC
Confidence 789999999999999999999999988889999999987665444433221 57889999986532 1225
Q ss_pred CccEEEECCCCch----hHHHHHhccccCcEEEEEEC
Q 022372 226 PYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 226 ~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+||+|+++...++ +..++.+.|||||.+++.+.
T Consensus 202 ~vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ik 238 (293)
T PTZ00146 202 MVDVIFADVAQPDQARIVALNAQYFLKNGGHFIISIK 238 (293)
T ss_pred CCCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEEEe
Confidence 7999999987543 33578889999999999543
No 95
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=3.2e-11 Score=110.71 Aligned_cols=130 Identities=21% Similarity=0.260 Sum_probs=96.1
Q ss_pred CCCCccccCCCccChHHHHHHHHHHHHccCCCCC-EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 120 VDSPMAIGYNATISAPHMHATCLQLLEENLKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 120 ~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~-~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
....+....+..+++|.....+-..+. ...... +|||+|||||.++..+++.. +..+|+++|+|+++++.|++|+..
T Consensus 79 ~gl~~~v~~~vliPr~dTe~Lve~~l~-~~~~~~~~ilDlGTGSG~iai~la~~~-~~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 79 GGLRFKVDEGVLIPRPDTELLVEAALA-LLLQLDKRILDLGTGSGAIAIALAKEG-PDAEVIAVDISPDALALARENAER 156 (280)
T ss_pred cceeeeeCCCceecCCchHHHHHHHHH-hhhhcCCcEEEecCChHHHHHHHHhhC-cCCeEEEEECCHHHHHHHHHHHHH
Confidence 344455566777777775544433221 122222 79999999999999999995 667999999999999999999998
Q ss_pred hccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC-------------------------------chhHHHHHhcc
Q 022372 199 SAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA-------------------------------PEIPQALIDQL 247 (298)
Q Consensus 199 ~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~-------------------------------~~l~~~l~~~L 247 (298)
+++ .++.++.+|...... ++||+|++|++. .++..++.+.|
T Consensus 157 ~~l------~~~~~~~~dlf~~~~--~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l 228 (280)
T COG2890 157 NGL------VRVLVVQSDLFEPLR--GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDIL 228 (280)
T ss_pred cCC------ccEEEEeeecccccC--CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHc
Confidence 764 467777777665544 389999999874 11124566789
Q ss_pred ccCcEEEEEECC
Q 022372 248 KPGGRMVIPVGN 259 (298)
Q Consensus 248 kpGG~Lvi~v~~ 259 (298)
+|||.+++.++.
T Consensus 229 ~~~g~l~le~g~ 240 (280)
T COG2890 229 KPGGVLILEIGL 240 (280)
T ss_pred CCCcEEEEEECC
Confidence 999999999884
No 96
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.30 E-value=3.5e-11 Score=116.69 Aligned_cols=112 Identities=21% Similarity=0.219 Sum_probs=85.9
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+...+. +.+|.+|||+|||+|+.+..+++..+ .++|+++|+++++++.+++|+++.+.. .++.+..+|..
T Consensus 228 ~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~-----~~v~~~~~d~~ 299 (426)
T TIGR00563 228 QWVATWLA--PQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLT-----IKAETKDGDGR 299 (426)
T ss_pred HHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeccccc
Confidence 34455555 77899999999999999999999875 679999999999999999999886642 23444666665
Q ss_pred CCCC--CCCCccEEEECCCCc----------------------------hhHHHHHhccccCcEEEEEEC
Q 022372 219 KGWP--EFAPYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 219 ~~~~--~~~~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.... ..++||.|+++++.. .+.+++.+.|||||+|+++..
T Consensus 300 ~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystc 369 (426)
T TIGR00563 300 GPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATC 369 (426)
T ss_pred cccccccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 4322 346899999886421 244677889999999998754
No 97
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.30 E-value=5.9e-13 Score=102.71 Aligned_cols=91 Identities=22% Similarity=0.330 Sum_probs=58.9
Q ss_pred EEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCccEEEEC
Q 022372 156 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVG 233 (298)
Q Consensus 156 LDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~--~~~fD~Ii~~ 233 (298)
||+|||+|.++..+.+.. +..+++++|+|+.+++.|++++..... .+......+..+.... .++||+|++.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGN------DNFERLRFDVLDLFDYDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---------EEEEE--SSS---CCC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC------cceeEEEeecCChhhcccccccceehhh
Confidence 799999999999999985 668999999999999999988877543 3333444333332211 1589999999
Q ss_pred CCCchh------HHHHHhccccCcEE
Q 022372 234 AAAPEI------PQALIDQLKPGGRM 253 (298)
Q Consensus 234 ~~~~~l------~~~l~~~LkpGG~L 253 (298)
.+++++ .+++.+.|||||+|
T Consensus 74 ~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 998765 36788999999986
No 98
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.30 E-value=6.7e-11 Score=106.99 Aligned_cols=99 Identities=20% Similarity=0.284 Sum_probs=78.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCccE
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDA 229 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~--~~~fD~ 229 (298)
+.+|||+|||+|.++..+++.. +..+|+++|+++.+++.|++|+..++ ++++.+|..+.... .++||+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~-~~~~v~~vDis~~al~~A~~N~~~~~---------~~~~~~D~~~~l~~~~~~~fDl 156 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL-DGIELHAADIDPAAVRCARRNLADAG---------GTVHEGDLYDALPTALRGRVDI 156 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcC---------CEEEEeechhhcchhcCCCEeE
Confidence 4589999999999999999875 44689999999999999999987632 46788887654331 257999
Q ss_pred EEECCCCc--------------------------------hhHHHHHhccccCcEEEEEECCC
Q 022372 230 IHVGAAAP--------------------------------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 230 Ii~~~~~~--------------------------------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|++|.+.. .+.+.+.+.|||||++++..+..
T Consensus 157 Vv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~ 219 (251)
T TIGR03704 157 LAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSER 219 (251)
T ss_pred EEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcc
Confidence 99998641 22345568999999999987753
No 99
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.29 E-value=3e-11 Score=104.58 Aligned_cols=104 Identities=22% Similarity=0.186 Sum_probs=78.6
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. .-++.++||+|||.|+.+.+||++. -.|+++|.++..++.+++...+.++ +++....|..
T Consensus 20 s~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G---~~VtAvD~s~~al~~l~~~a~~~~l-------~i~~~~~Dl~ 87 (192)
T PF03848_consen 20 SEVLEAVP--LLKPGKALDLGCGEGRNALYLASQG---FDVTAVDISPVALEKLQRLAEEEGL-------DIRTRVADLN 87 (192)
T ss_dssp HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT----EEEEEESSHHHHHHHHHHHHHTT--------TEEEEE-BGC
T ss_pred HHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCC---CeEEEEECCHHHHHHHHHHHhhcCc-------eeEEEEecch
Confidence 34555554 3345799999999999999999984 6999999999999999887776543 4888999987
Q ss_pred CCCCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi 255 (298)
....+ +.||+|++..++. .+.+++.+.++|||.+++
T Consensus 88 ~~~~~-~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li 131 (192)
T PF03848_consen 88 DFDFP-EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLI 131 (192)
T ss_dssp CBS-T-TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEE
T ss_pred hcccc-CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEE
Confidence 65444 6899999876653 344677888999999887
No 100
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.28 E-value=4.5e-11 Score=113.60 Aligned_cols=112 Identities=20% Similarity=0.229 Sum_probs=91.3
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
+.+++.+. ...+..+||||||+|..+..+|+.. |+..++|+|+++.+++.|.+++...++ .|+.++.+|+.
T Consensus 112 ~~~~~~~~--~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL------~NV~~i~~DA~ 182 (390)
T PRK14121 112 DNFLDFIS--KNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNL------KNLLIINYDAR 182 (390)
T ss_pred HHHHHHhc--CCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHH
Confidence 34455554 4556799999999999999999995 778999999999999999999887654 68999999986
Q ss_pred CC--CCCCCCccEEEECCCCc------------hhHHHHHhccccCcEEEEEECC
Q 022372 219 KG--WPEFAPYDAIHVGAAAP------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 219 ~~--~~~~~~fD~Ii~~~~~~------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.. ..+.+++|.|+++.+.+ .+.+.+.+.|+|||.+.+....
T Consensus 183 ~ll~~~~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 183 LLLELLPSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred HhhhhCCCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 42 23447899999988764 4568899999999999996654
No 101
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.28 E-value=2.8e-11 Score=106.87 Aligned_cols=104 Identities=22% Similarity=0.211 Sum_probs=75.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhcc------CCccCCCCEEEEEcCCCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA------APLLKEGSLSVHVGDGRKGWP 222 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~------~~~l~~~~v~~~~gD~~~~~~ 222 (298)
.+++.+|||+|||.|+.+..||++. ..|+|+|+|+.+++.+.+....... .......++++.++|..+...
T Consensus 32 ~~~~~rvLd~GCG~G~da~~LA~~G---~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~ 108 (213)
T TIGR03840 32 LPAGARVFVPLCGKSLDLAWLAEQG---HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA 108 (213)
T ss_pred CCCCCeEEEeCCCchhHHHHHHhCC---CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence 3577899999999999999999873 6899999999999986432111000 000012578999999987543
Q ss_pred C-CCCccEEEECCCCchh--------HHHHHhccccCcEEEE
Q 022372 223 E-FAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVI 255 (298)
Q Consensus 223 ~-~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi 255 (298)
. .++||.|+....+.++ .+.+.+.|||||++++
T Consensus 109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll 150 (213)
T TIGR03840 109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLL 150 (213)
T ss_pred ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 2 3579999887765443 4678899999997554
No 102
>PRK04457 spermidine synthase; Provisional
Probab=99.27 E-value=3.9e-11 Score=109.21 Aligned_cols=104 Identities=21% Similarity=0.231 Sum_probs=82.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~f 227 (298)
.+++.+|||+|||+|.++..+++.. |..+++++|+++++++.|++++..... .++++++.+|+.+.... .++|
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~-----~~rv~v~~~Da~~~l~~~~~~y 137 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPEN-----GERFEVIEADGAEYIAVHRHST 137 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCC-----CCceEEEECCHHHHHHhCCCCC
Confidence 3456799999999999999999885 668999999999999999998754322 26899999998754322 2579
Q ss_pred cEEEECCCC----------chhHHHHHhccccCcEEEEEEC
Q 022372 228 DAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 228 D~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|+|+++..- .++.+.+.+.|+|||++++.+.
T Consensus 138 D~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 138 DVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 999987521 3556888999999999999654
No 103
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.27 E-value=6.7e-11 Score=103.65 Aligned_cols=108 Identities=24% Similarity=0.340 Sum_probs=85.0
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ..++.+|||+|||+|..+..+++..+...+++++|+++.+++.++++.. . ..+++++.+|..
T Consensus 29 ~~~~~~~~--~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~-----~~~i~~~~~d~~ 98 (223)
T TIGR01934 29 RRAVKLIG--VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---L-----PLNIEFIQADAE 98 (223)
T ss_pred HHHHHHhc--cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---c-----CCCceEEecchh
Confidence 34455554 4578899999999999999999986433689999999999999998764 1 157889999987
Q ss_pred CCCCCCCCccEEEECCCCc------hhHHHHHhccccCcEEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAP------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~ 256 (298)
+.....++||+|++...++ .+.+++.+.|+|||++++.
T Consensus 99 ~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~ 142 (223)
T TIGR01934 99 ALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVIL 142 (223)
T ss_pred cCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 7554456899999876653 3457889999999999973
No 104
>PRK06922 hypothetical protein; Provisional
Probab=99.26 E-value=4.7e-11 Score=119.21 Aligned_cols=101 Identities=23% Similarity=0.267 Sum_probs=81.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~~ 226 (298)
..++.+|||+|||+|..+..+++.. ++.+|+|+|+++.+++.|+++....+ .++.++.+|..+.. .+.++
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g-------~~ie~I~gDa~dLp~~fedeS 487 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEG-------RSWNVIKGDAINLSSSFEKES 487 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcC-------CCeEEEEcchHhCccccCCCC
Confidence 3467899999999999999999875 66899999999999999998865432 46788889987643 34478
Q ss_pred ccEEEECCCCch-------------------hHHHHHhccccCcEEEEEE
Q 022372 227 YDAIHVGAAAPE-------------------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 227 fD~Ii~~~~~~~-------------------l~~~l~~~LkpGG~Lvi~v 257 (298)
||+|+++.++++ +.+++.+.|||||++++.-
T Consensus 488 FDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D 537 (677)
T PRK06922 488 VDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD 537 (677)
T ss_pred EEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence 999998865543 3467889999999999954
No 105
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.26 E-value=1.9e-11 Score=101.55 Aligned_cols=102 Identities=30% Similarity=0.418 Sum_probs=75.8
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
..+..+.....++.+|||+|||+|.++..+++. + .+++|+|+++.+++. . ++.....+...
T Consensus 11 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~--~~~~g~D~~~~~~~~------~----------~~~~~~~~~~~ 71 (161)
T PF13489_consen 11 DLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR-G--FEVTGVDISPQMIEK------R----------NVVFDNFDAQD 71 (161)
T ss_dssp HHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT-T--SEEEEEESSHHHHHH------T----------TSEEEEEECHT
T ss_pred HHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh-C--CEEEEEECCHHHHhh------h----------hhhhhhhhhhh
Confidence 344444433678899999999999999999776 3 499999999999988 1 11222222223
Q ss_pred CCCCCCCccEEEECCCCchhH------HHHHhccccCcEEEEEECCC
Q 022372 220 GWPEFAPYDAIHVGAAAPEIP------QALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~------~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.....++||+|++..++++++ +.+.+.|||||.+++.+...
T Consensus 72 ~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 72 PPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp HHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 233447999999999987654 78899999999999988764
No 106
>PRK05785 hypothetical protein; Provisional
Probab=99.25 E-value=7.7e-11 Score=104.97 Aligned_cols=102 Identities=13% Similarity=0.092 Sum_probs=76.6
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
.++..+.....++.+|||+|||+|..+..+++.. ..+|+|+|++++|++.|+++. .++++|...
T Consensus 40 ~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--------------~~~~~d~~~ 103 (226)
T PRK05785 40 ELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--------------DKVVGSFEA 103 (226)
T ss_pred HHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--------------ceEEechhh
Confidence 3444443233457899999999999999999875 269999999999999997531 245778777
Q ss_pred CCCCCCCccEEEECCCCch------hHHHHHhccccCcEEEEEEC
Q 022372 220 GWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...++++||+|++..++++ ..+++.+.|||. ..++.++
T Consensus 104 lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~-~~ile~~ 147 (226)
T PRK05785 104 LPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ-VGFIAMG 147 (226)
T ss_pred CCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCc-eEEEEeC
Confidence 6556689999999998764 447899999994 3344443
No 107
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.25 E-value=1.2e-10 Score=108.12 Aligned_cols=107 Identities=19% Similarity=0.184 Sum_probs=86.0
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ++++.+|||+|||+|..+..+++.. |+.+++++|. +.+++.+++++.+.+.. ++++++.+|..
T Consensus 139 ~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~-----~rv~~~~~d~~ 209 (306)
T TIGR02716 139 QLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVA-----DRMRGIAVDIY 209 (306)
T ss_pred HHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCcc-----ceEEEEecCcc
Confidence 34455554 6778899999999999999999995 6689999997 78999999999887654 68999999987
Q ss_pred CCCCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~ 256 (298)
+...+ .+|+|++...++ .+.+++++.|||||++++.
T Consensus 210 ~~~~~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~ 253 (306)
T TIGR02716 210 KESYP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLIL 253 (306)
T ss_pred CCCCC--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEE
Confidence 53322 379997776543 3557889999999999984
No 108
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.24 E-value=1e-10 Score=102.59 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=65.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.++++.+|||+|||+|+.+..+++.. +..+++|+|+++++++.|+++. +++.+..+|..+ ....++|
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~-~~~~v~giDiS~~~l~~A~~~~-----------~~~~~~~~d~~~-~~~~~sf 106 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL-PFKHIYGVEINEYAVEKAKAYL-----------PNINIIQGSLFD-PFKDNFF 106 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHhhC-----------CCCcEEEeeccC-CCCCCCE
Confidence 46677899999999999999999875 4479999999999999998763 346778888877 3345799
Q ss_pred cEEEECCCCchh
Q 022372 228 DAIHVGAAAPEI 239 (298)
Q Consensus 228 D~Ii~~~~~~~l 239 (298)
|+|+++.+++++
T Consensus 107 D~V~~~~vL~hl 118 (204)
T TIGR03587 107 DLVLTKGVLIHI 118 (204)
T ss_pred EEEEECChhhhC
Confidence 999999988665
No 109
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.24 E-value=2.1e-11 Score=118.46 Aligned_cols=141 Identities=22% Similarity=0.231 Sum_probs=104.6
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+.+.+. +.++.+|||+|||+|.++..+++.. .+|+|+|+++++++.|++|+..++. .+++++.+|.
T Consensus 281 ~~~~~~~l~--~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~------~nv~~~~~d~ 349 (431)
T TIGR00479 281 VDRALEALE--LQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGI------ANVEFLAGTL 349 (431)
T ss_pred HHHHHHHhc--cCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCC------CceEEEeCCH
Confidence 334444443 5677899999999999999999874 5899999999999999999987664 6899999998
Q ss_pred CCCCC----CCCCccEEEECCCCc----hhHHHHHhccccCcEEEEEECCCc--eeEEEEEEcCCCCeEEEEeeeEEEee
Q 022372 218 RKGWP----EFAPYDAIHVGAAAP----EIPQALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVP 287 (298)
Q Consensus 218 ~~~~~----~~~~fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~~~l~~v~fvP 287 (298)
.+..+ ..++||+|+++.+-. .+.+.+ ..++|++.++++..... ..+..+. +..+..+.+.+|..+|
T Consensus 350 ~~~l~~~~~~~~~~D~vi~dPPr~G~~~~~l~~l-~~l~~~~ivyvsc~p~tlard~~~l~---~~gy~~~~~~~~DmFP 425 (431)
T TIGR00479 350 ETVLPKQPWAGQIPDVLLLDPPRKGCAAEVLRTI-IELKPERIVYVSCNPATLARDLEFLC---KEGYGITWVQPVDMFP 425 (431)
T ss_pred HHHHHHHHhcCCCCCEEEECcCCCCCCHHHHHHH-HhcCCCEEEEEcCCHHHHHHHHHHHH---HCCeeEEEEEEeccCC
Confidence 65321 235799999998753 333443 35889998888765432 2233332 2348888999999999
Q ss_pred cccchh
Q 022372 288 LTSRDA 293 (298)
Q Consensus 288 l~~~~~ 293 (298)
-|...+
T Consensus 426 ~T~HvE 431 (431)
T TIGR00479 426 HTAHVE 431 (431)
T ss_pred CCCCCC
Confidence 998653
No 110
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.23 E-value=7.4e-11 Score=103.88 Aligned_cols=94 Identities=23% Similarity=0.347 Sum_probs=74.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-------
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------- 221 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------- 221 (298)
++++.+|||+|||+|..+..+++..++.++|+++|+++. .. .++++++++|..+..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~------~~~v~~i~~D~~~~~~~~~i~~ 111 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DP------IVGVDFLQGDFRDELVLKALLE 111 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cC------CCCcEEEecCCCChHHHHHHHH
Confidence 578899999999999999999999777789999999881 01 156899999988742
Q ss_pred -CCCCCccEEEECCCC-----------------chhHHHHHhccccCcEEEEEECC
Q 022372 222 -PEFAPYDAIHVGAAA-----------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 -~~~~~fD~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
...++||+|+++.+. +.+.+.+.+.|||||.+++.+..
T Consensus 112 ~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~ 167 (209)
T PRK11188 112 RVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQ 167 (209)
T ss_pred HhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 234789999998743 12457788999999999996543
No 111
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.22 E-value=7.7e-11 Score=107.36 Aligned_cols=108 Identities=15% Similarity=0.176 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCCCcH----HHHHHHHHcCC----CcEEEEEeCCHHHHHHHHHHHHH----hcc----------------
Q 022372 150 KPGMHALDIGSGTGY----LTACFALMVGP----QGRAVGVEHIPELVVSSIQNIEK----SAA---------------- 201 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~----~t~~La~~~g~----~~~V~giD~s~~~l~~A~~~~~~----~~~---------------- 201 (298)
.++.+|||+|||+|. ++..+++..+. +.+|+|+|+++.+++.|++..-. .+.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 355799999999996 45566665432 46899999999999999975410 000
Q ss_pred --CCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEEEEC
Q 022372 202 --APLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 202 --~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.+.+ ..+++|.++|..+..++.++||+|++..++. .+.+++.+.|||||.|++--.
T Consensus 178 ~v~~~i-r~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~ 243 (264)
T smart00138 178 RVKPEL-KERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHS 243 (264)
T ss_pred EEChHH-hCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECc
Confidence 0000 1478999999988665557999999987763 355788999999999998433
No 112
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.22 E-value=1.5e-10 Score=102.14 Aligned_cols=107 Identities=19% Similarity=0.155 Sum_probs=80.0
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+.....++.+|||+|||+|.++..+++.. .+|+|+|+++++++.|++++...+.. .++.+..+|.
T Consensus 42 ~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~---~~v~gvD~s~~~i~~a~~~~~~~~~~-----~~i~~~~~d~ 113 (219)
T TIGR02021 42 RRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRG---AIVKAVDISEQMVQMARNRAQGRDVA-----GNVEFEVNDL 113 (219)
T ss_pred HHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCC---CEEEEEECCHHHHHHHHHHHHhcCCC-----CceEEEECCh
Confidence 444566654224567899999999999999998862 58999999999999999998764432 4789999998
Q ss_pred CCCCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi 255 (298)
.... ++||+|++...+.++ .+++.+.+++++.+.+
T Consensus 114 ~~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 114 LSLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred hhCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6643 689999987765432 3556667776655544
No 113
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.21 E-value=6.9e-11 Score=112.81 Aligned_cols=131 Identities=18% Similarity=0.117 Sum_probs=101.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD 228 (298)
.++.+|||+|||+|.++..++... .+|+|+|+++.+++.|++|++.++. ++++++.+|..+.... ..+||
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~---~~v~~vE~~~~av~~a~~N~~~~~~------~~~~~~~~d~~~~~~~~~~~~D 302 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPD---TQLTGIEIESEAIACAQQSAQMLGL------DNLSFAALDSAKFATAQMSAPE 302 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcC---CeEEEEECCHHHHHHHHHHHHHcCC------CcEEEEECCHHHHHHhcCCCCC
Confidence 456799999999999999999753 6899999999999999999988654 5899999998653321 24699
Q ss_pred EEEECCCCchhHHHH---HhccccCcEEEEEECCCc--eeEEEEEEcCCCCeEEEEeeeEEEeecccchhh
Q 022372 229 AIHVGAAAPEIPQAL---IDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQ 294 (298)
Q Consensus 229 ~Ii~~~~~~~l~~~l---~~~LkpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~~ 294 (298)
+|+++++-..+...+ ...++|++.++++.+... .++..+ +.|..+.+.++.++|-|...+-
T Consensus 303 ~vi~DPPr~G~~~~~l~~l~~~~p~~ivyvsc~p~TlaRDl~~L-----~gy~l~~~~~~DmFPqT~HvE~ 368 (374)
T TIGR02085 303 LVLVNPPRRGIGKELCDYLSQMAPKFILYSSCNAQTMAKDIAEL-----SGYQIERVQLFDMFPHTSHYEV 368 (374)
T ss_pred EEEECCCCCCCcHHHHHHHHhcCCCeEEEEEeCHHHHHHHHHHh-----cCceEEEEEEeccCCCCCcEEE
Confidence 999999875443322 345799999999887643 233333 2489999999999999998763
No 114
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.20 E-value=6.5e-11 Score=101.72 Aligned_cols=98 Identities=27% Similarity=0.385 Sum_probs=80.9
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~ 225 (298)
.++||.+|||+|||.|.+...|.+.- +.+.+|+|++++.+..+.++ -+.++++|..++. .+++
T Consensus 10 ~I~pgsrVLDLGCGdG~LL~~L~~~k--~v~g~GvEid~~~v~~cv~r-------------Gv~Viq~Dld~gL~~f~d~ 74 (193)
T PF07021_consen 10 WIEPGSRVLDLGCGDGELLAYLKDEK--QVDGYGVEIDPDNVAACVAR-------------GVSVIQGDLDEGLADFPDQ 74 (193)
T ss_pred HcCCCCEEEecCCCchHHHHHHHHhc--CCeEEEEecCHHHHHHHHHc-------------CCCEEECCHHHhHhhCCCC
Confidence 47899999999999999999998853 37899999999999888653 4568999987654 3458
Q ss_pred CccEEEECCCCchhH---HHHHhccccCcEEEEEECCC
Q 022372 226 PYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+||.|+.+.+++++. .-+.+.|+-|...+++++|-
T Consensus 75 sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr~~IVsFPNF 112 (193)
T PF07021_consen 75 SFDYVILSQTLQAVRRPDEVLEEMLRVGRRAIVSFPNF 112 (193)
T ss_pred CccEEehHhHHHhHhHHHHHHHHHHHhcCeEEEEecCh
Confidence 999999999987664 34567789999999999984
No 115
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.19 E-value=2.6e-10 Score=96.87 Aligned_cols=106 Identities=20% Similarity=0.180 Sum_probs=81.8
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
.++++.+. +.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++.. .++++++.+|+.
T Consensus 3 ~~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~~---~~v~~vE~~~~~~~~~~~~~~~--------~~~v~ii~~D~~ 69 (169)
T smart00650 3 DKIVRAAN--LRPGDTVLEIGPGKGALTEELLERA---ARVTAIEIDPRLAPRLREKFAA--------ADNLTVIHGDAL 69 (169)
T ss_pred HHHHHhcC--CCCcCEEEEECCCccHHHHHHHhcC---CeEEEEECCHHHHHHHHHHhcc--------CCCEEEEECchh
Confidence 45566665 6788899999999999999999873 6899999999999999988743 158999999998
Q ss_pred CCCCCCCCccEEEECCCCch---hHHHHHhc--cccCcEEEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAPE---IPQALIDQ--LKPGGRMVIPV 257 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~---l~~~l~~~--LkpGG~Lvi~v 257 (298)
+...+...||.|+++.+... +...+.+. +.++|.+++..
T Consensus 70 ~~~~~~~~~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 70 KFDLPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cCCccccCCCEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEH
Confidence 86555457999999998753 33334332 34777777743
No 116
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.17 E-value=5.6e-10 Score=97.54 Aligned_cols=114 Identities=17% Similarity=0.087 Sum_probs=83.5
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
+...++..+. ...++.+|||+|||+|.++..++.. +. .+|+++|.++++++.+++|++.++. .+++++.+|
T Consensus 40 v~e~l~~~l~-~~~~~~~vLDl~~GsG~l~l~~lsr-~a-~~V~~vE~~~~a~~~a~~Nl~~~~~------~~v~~~~~D 110 (199)
T PRK10909 40 VRETLFNWLA-PVIVDARCLDCFAGSGALGLEALSR-YA-AGATLLEMDRAVAQQLIKNLATLKA------GNARVVNTN 110 (199)
T ss_pred HHHHHHHHHh-hhcCCCEEEEcCCCccHHHHHHHHc-CC-CEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEEch
Confidence 3344555554 2346789999999999999865444 23 6999999999999999999988654 579999999
Q ss_pred CCCCCC-CCCCccEEEECCCC-chhHHH----HHh--ccccCcEEEEEECC
Q 022372 217 GRKGWP-EFAPYDAIHVGAAA-PEIPQA----LID--QLKPGGRMVIPVGN 259 (298)
Q Consensus 217 ~~~~~~-~~~~fD~Ii~~~~~-~~l~~~----l~~--~LkpGG~Lvi~v~~ 259 (298)
...... ...+||+|+++++. ..+.+. +.+ +|+|+|.+++....
T Consensus 111 ~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~~~~iv~ve~~~ 161 (199)
T PRK10909 111 ALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLADEALIYVESEV 161 (199)
T ss_pred HHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence 876432 22479999999995 333333 333 36889999987654
No 117
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.16 E-value=1.5e-10 Score=113.61 Aligned_cols=105 Identities=18% Similarity=0.218 Sum_probs=81.0
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+++.+. ..++.+|||+|||+|..+..+++.. .+|+|+|+++++++.+++.... .++++++++|..
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~~~--------~~~i~~~~~d~~ 93 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESINGH--------YKNVKFMCADVT 93 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHhcc--------CCceEEEEeccc
Confidence 34455554 4567899999999999999999874 5899999999999887653211 158899999986
Q ss_pred CC--CCCCCCccEEEECCCCch--------hHHHHHhccccCcEEEEE
Q 022372 219 KG--WPEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 219 ~~--~~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi~ 256 (298)
.. ..+.++||+|+++.++.+ +.+++.+.|||||++++.
T Consensus 94 ~~~~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 94 SPDLNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred ccccCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 32 223478999999987654 446788999999999884
No 118
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.15 E-value=6.2e-10 Score=101.80 Aligned_cols=128 Identities=19% Similarity=0.294 Sum_probs=82.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
.|.+|||||||+||.+-.++.. |+ ..|+|+|.+.......+.--.- ++..+..+....+.+..+..+.||+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~-GA-~~ViGiDP~~lf~~QF~~i~~~------lg~~~~~~~lplgvE~Lp~~~~FDtV 186 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGR-GA-KSVIGIDPSPLFYLQFEAIKHF------LGQDPPVFELPLGVEDLPNLGAFDTV 186 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhc-CC-CEEEEECCChHHHHHHHHHHHH------hCCCccEEEcCcchhhccccCCcCEE
Confidence 5789999999999999999988 45 5899999999877664322221 11122223332333433446789999
Q ss_pred EECCCCch------hHHHHHhccccCcEEEEEEC--CCceeEEEEEEcCCCCeEEEEeeeEEEeecccc
Q 022372 231 HVGAAAPE------IPQALIDQLKPGGRMVIPVG--NIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSR 291 (298)
Q Consensus 231 i~~~~~~~------l~~~l~~~LkpGG~Lvi~v~--~~~q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~ 291 (298)
++.+++-| ...++.+.|++||.||+-.- ++.....++- ++.+ -.+-.|.|+|-...
T Consensus 187 F~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P---~~rY--a~m~nv~FiPs~~~ 250 (315)
T PF08003_consen 187 FSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVP---EDRY--AKMRNVWFIPSVAA 250 (315)
T ss_pred EEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEcc---CCcc--cCCCceEEeCCHHH
Confidence 99999844 34788999999999998432 2222222221 1122 24567888886443
No 119
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=4e-10 Score=100.83 Aligned_cols=128 Identities=22% Similarity=0.276 Sum_probs=106.1
Q ss_pred ccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCC
Q 022372 124 MAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP 203 (298)
Q Consensus 124 ~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~ 203 (298)
+.+.+...|..+...+.++..|+ +.||.+|+|-|+|+|.++..+++.++|.++++..|+.....+.|++.+++.++.
T Consensus 80 l~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~- 156 (314)
T KOG2915|consen 80 LALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIG- 156 (314)
T ss_pred hhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCC-
Confidence 45566677776667888999998 999999999999999999999999999999999999999999999999998876
Q ss_pred ccCCCCEEEEEcCCCC-CCCC-CCCccEEEECCCCchhH-HHHHhccccCcEEEEEEC
Q 022372 204 LLKEGSLSVHVGDGRK-GWPE-FAPYDAIHVGAAAPEIP-QALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 204 ~l~~~~v~~~~gD~~~-~~~~-~~~fD~Ii~~~~~~~l~-~~l~~~LkpGG~Lvi~v~ 258 (298)
+++++.+.|+.. ++.. ...+|+|+.+.+.++.. ..+...||.+|.-++.+.
T Consensus 157 ----~~vt~~hrDVc~~GF~~ks~~aDaVFLDlPaPw~AiPha~~~lk~~g~r~csFS 210 (314)
T KOG2915|consen 157 ----DNVTVTHRDVCGSGFLIKSLKADAVFLDLPAPWEAIPHAAKILKDEGGRLCSFS 210 (314)
T ss_pred ----cceEEEEeecccCCccccccccceEEEcCCChhhhhhhhHHHhhhcCceEEecc
Confidence 899999999775 3332 46899999999987643 455568888775555443
No 120
>PRK00811 spermidine synthase; Provisional
Probab=99.14 E-value=2.7e-10 Score=104.85 Aligned_cols=108 Identities=20% Similarity=0.170 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD 228 (298)
+.+.+||++|||+|..+..+++.. +..+|+++|+++++++.|++++...... ....++++++.+|+..... ..++||
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~-~~~~V~~VEid~~vv~~a~~~~~~~~~~-~~~d~rv~v~~~Da~~~l~~~~~~yD 152 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHP-SVEKITLVEIDERVVEVCRKYLPEIAGG-AYDDPRVELVIGDGIKFVAETENSFD 152 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCC-CCCEEEEEeCCHHHHHHHHHHhHHhccc-cccCCceEEEECchHHHHhhCCCccc
Confidence 455799999999999999988762 3468999999999999999988653211 1234789999999876443 246899
Q ss_pred EEEECCCC----------chhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+++..- .++.+.+.+.|+|||++++..+.
T Consensus 153 vIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~ 193 (283)
T PRK00811 153 VIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS 193 (283)
T ss_pred EEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 99998642 23457788999999999986543
No 121
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.14 E-value=6.2e-10 Score=103.28 Aligned_cols=106 Identities=15% Similarity=0.155 Sum_probs=77.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCC--
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA-- 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~-- 225 (298)
.++++.+|||+|||+|..+..|++.+....+|+++|+|++|++.|++++..... .-++.++++|..+......
T Consensus 60 ~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p-----~~~v~~i~gD~~~~~~~~~~~ 134 (301)
T TIGR03438 60 ATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYP-----QLEVHGICADFTQPLALPPEP 134 (301)
T ss_pred hhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCC-----CceEEEEEEcccchhhhhccc
Confidence 356778999999999999999998863246899999999999999998765321 1357778999876432112
Q ss_pred ---CccEEEECCCCc--------hhHHHHHhccccCcEEEEEEC
Q 022372 226 ---PYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 226 ---~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...+++++..+. .+.+++.+.|+|||.+++.+.
T Consensus 135 ~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~d 178 (301)
T TIGR03438 135 AAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVD 178 (301)
T ss_pred ccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 233445444432 345788999999999998663
No 122
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.14 E-value=3e-10 Score=98.07 Aligned_cols=94 Identities=26% Similarity=0.287 Sum_probs=72.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
.++++.+|||+|||+|.++..+++...+.++|+++|+++.+ .. .+++++++|..+..
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~------~~i~~~~~d~~~~~~~~~l~ 91 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI------ENVDFIRGDFTDEEVLNKIR 91 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC------CCceEEEeeCCChhHHHHHH
Confidence 36789999999999999999999886555789999999864 11 46788888876532
Q ss_pred --CCCCCccEEEECCCC-----------------chhHHHHHhccccCcEEEEEEC
Q 022372 222 --PEFAPYDAIHVGAAA-----------------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...++||+|+++... ..+.+.+.+.|+|||++++.+.
T Consensus 92 ~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 92 ERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 233579999997531 2345778899999999999553
No 123
>PLN02366 spermidine synthase
Probab=99.14 E-value=5.7e-10 Score=103.70 Aligned_cols=106 Identities=21% Similarity=0.240 Sum_probs=83.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC--CCCCc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~--~~~~f 227 (298)
+...+||+||+|.|..+..+++. .+..+|+.+|+++++++.|++.+..... .+..++++++.+|+..... +.++|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~--~~~dpRv~vi~~Da~~~l~~~~~~~y 166 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAV--GFDDPRVNLHIGDGVEFLKNAPEGTY 166 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhcc--ccCCCceEEEEChHHHHHhhccCCCC
Confidence 45689999999999999999886 3446899999999999999998865321 2445799999999865432 13689
Q ss_pred cEEEECCCCc----------hhHHHHHhccccCcEEEEEEC
Q 022372 228 DAIHVGAAAP----------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 228 D~Ii~~~~~~----------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|+|+++..-+ ++.+.+.+.|+|||+++...+
T Consensus 167 DvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~~ 207 (308)
T PLN02366 167 DAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQAE 207 (308)
T ss_pred CEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECcC
Confidence 9999987542 345788999999999987443
No 124
>PRK06202 hypothetical protein; Provisional
Probab=99.13 E-value=4.6e-10 Score=99.99 Aligned_cols=97 Identities=14% Similarity=0.103 Sum_probs=69.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA 225 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~---g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~ 225 (298)
..++.+|||+|||+|.++..+++.. ++..+|+|+|+++++++.|+++... .++.+...+........+
T Consensus 58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~---------~~~~~~~~~~~~l~~~~~ 128 (232)
T PRK06202 58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR---------PGVTFRQAVSDELVAEGE 128 (232)
T ss_pred CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc---------CCCeEEEEecccccccCC
Confidence 3566899999999999999888653 3446999999999999999887543 345555555433322447
Q ss_pred CccEEEECCCCchhH--------HHHHhccccCcEEEE
Q 022372 226 PYDAIHVGAAAPEIP--------QALIDQLKPGGRMVI 255 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~--------~~l~~~LkpGG~Lvi 255 (298)
+||+|+++.+++++. +++.+.++ |+.++.
T Consensus 129 ~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~ 165 (232)
T PRK06202 129 RFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHN 165 (232)
T ss_pred CccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEe
Confidence 899999999886554 45666776 444443
No 125
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.11 E-value=5.7e-10 Score=98.89 Aligned_cols=101 Identities=22% Similarity=0.140 Sum_probs=75.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC---------CccCCCCEEEEEcCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA---------PLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~---------~~l~~~~v~~~~gD~~~ 219 (298)
+.++.+|||+|||.|..+..||++. .+|+|+|+++.+++.+.+. .++. ......++++.++|...
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G---~~V~avD~s~~Ai~~~~~~---~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~ 108 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQG---HEVLGVELSELAVEQFFAE---NGLTPQTRQSGEFEHYQAGEITIYCGDFFA 108 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCC---CeEEEEccCHHHHHHHHHH---cCCCccccccccccccccCceEEEECcccC
Confidence 5667899999999999999999873 6899999999999987432 1111 01123678999999987
Q ss_pred CCCC-CCCccEEEECCCCchh--------HHHHHhccccCcEEEE
Q 022372 220 GWPE-FAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~-~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi 255 (298)
..+. .+.||.|+....+.++ .+.+.+.|||||++++
T Consensus 109 l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 109 LTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence 6433 2579999877665443 4778899999997443
No 126
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.11 E-value=4.5e-10 Score=95.19 Aligned_cols=102 Identities=21% Similarity=0.170 Sum_probs=80.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 232 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~ 232 (298)
.+|||+|||+|.+...|++.. -.+..+|+|.++.+++.|+...++.+.. +.|+|.+.|...+....+.||+|+-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~eg-f~~~L~GvDYs~~AV~LA~niAe~~~~~-----n~I~f~q~DI~~~~~~~~qfdlvlD 142 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEG-FQSKLTGVDYSEKAVELAQNIAERDGFS-----NEIRFQQLDITDPDFLSGQFDLVLD 142 (227)
T ss_pred cceeeccCCchHHHHHHHHhc-CCCCccccccCHHHHHHHHHHHHhcCCC-----cceeEEEeeccCCcccccceeEEee
Confidence 499999999999999999883 4467999999999999998877776654 4599999999885444467777755
Q ss_pred CCCCc--------------hhHHHHHhccccCcEEEEEECCC
Q 022372 233 GAAAP--------------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 233 ~~~~~--------------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
-+.+. -+...+.+.|+|||+++|...|.
T Consensus 143 KGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~ 184 (227)
T KOG1271|consen 143 KGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNF 184 (227)
T ss_pred cCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCc
Confidence 54432 13366788999999999987764
No 127
>PLN02672 methionine S-methyltransferase
Probab=99.11 E-value=1.6e-09 Score=114.33 Aligned_cols=140 Identities=15% Similarity=0.077 Sum_probs=101.5
Q ss_pred CCCCCccccCCCccChHHHHHHHHHHHHccCC---CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH
Q 022372 119 YVDSPMAIGYNATISAPHMHATCLQLLEENLK---PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN 195 (298)
Q Consensus 119 Y~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~---~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~ 195 (298)
+....+.++.+..+++|..... .+.|..... ++.+|||+|||+|.++..+++.. +..+|+++|+++++++.|++|
T Consensus 84 F~~l~~~V~p~VLIPRpeTE~l-ve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~-~~~~v~avDis~~Al~~A~~N 161 (1082)
T PLN02672 84 RKKLTMMEIPSIFIPEDWSFTF-YEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKW-LPSKVYGLDINPRAVKVAWIN 161 (1082)
T ss_pred ecCCceeeCCCcccCchhHHHH-HHHHHhcccccCCCCEEEEEecchHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHH
Confidence 3445566777888888875544 333542211 24689999999999999999985 557999999999999999999
Q ss_pred HHHhccCC----------ccCCCCEEEEEcCCCCCCCCC-CCccEEEECCCCc---------------------------
Q 022372 196 IEKSAAAP----------LLKEGSLSVHVGDGRKGWPEF-APYDAIHVGAAAP--------------------------- 237 (298)
Q Consensus 196 ~~~~~~~~----------~l~~~~v~~~~gD~~~~~~~~-~~fD~Ii~~~~~~--------------------------- 237 (298)
+..++... .....+++++++|........ .+||+|++|.+.-
T Consensus 162 a~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~ 241 (1082)
T PLN02672 162 LYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNY 241 (1082)
T ss_pred HHHcCcccccccccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCcc
Confidence 98764310 001247999999988765432 3699999998730
Q ss_pred -----------------hhHHHHHhccccCcEEEEEECCC
Q 022372 238 -----------------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 238 -----------------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.+.++..+.|||||.+++.++..
T Consensus 242 ~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~ 281 (1082)
T PLN02672 242 CALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGR 281 (1082)
T ss_pred ccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 01134556899999999999864
No 128
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.10 E-value=1.1e-09 Score=96.77 Aligned_cols=90 Identities=22% Similarity=0.319 Sum_probs=68.8
Q ss_pred HHHHHHHHHc-cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 138 HATCLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 138 ~~~~l~~L~~-~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
...+++.+.. ...++.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++++...+.. .++.+..+|
T Consensus 49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~---~~v~~~D~s~~~i~~a~~~~~~~~~~-----~~i~~~~~d 120 (230)
T PRK07580 49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRG---AKVVASDISPQMVEEARERAPEAGLA-----GNITFEVGD 120 (230)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcCCc-----cCcEEEEcC
Confidence 3445555542 13567899999999999999999863 47999999999999999998765432 578899988
Q ss_pred CCCCCCCCCCccEEEECCCCch
Q 022372 217 GRKGWPEFAPYDAIHVGAAAPE 238 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~~~ 238 (298)
... ..++||+|++..++++
T Consensus 121 ~~~---~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 121 LES---LLGRFDTVVCLDVLIH 139 (230)
T ss_pred chh---ccCCcCEEEEcchhhc
Confidence 422 2368999999887744
No 129
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.09 E-value=2.9e-10 Score=108.06 Aligned_cols=129 Identities=12% Similarity=0.090 Sum_probs=100.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--------
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-------- 223 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-------- 223 (298)
+.+|||++||+|.++..+++.. .+|+++|.++.+++.|++|+..++. .|++++.+|+.+....
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~------~~v~~~~~d~~~~l~~~~~~~~~~ 277 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGI------DNVQIIRMSAEEFTQAMNGVREFN 277 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCC------CcEEEEECCHHHHHHHHhhccccc
Confidence 3579999999999999999875 5899999999999999999988664 5899999998653210
Q ss_pred --------CCCccEEEECCCCchhHHHHHhc-cccCcEEEEEECCCc--eeEEEEEEcCCCCeEEEEeeeEEEeecccch
Q 022372 224 --------FAPYDAIHVGAAAPEIPQALIDQ-LKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRD 292 (298)
Q Consensus 224 --------~~~fD~Ii~~~~~~~l~~~l~~~-LkpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~ 292 (298)
..+||+|+++++-..+.+.+.+. .+|++.++++.+... ..+..+. . .++.+.+.++..+|-|...
T Consensus 278 ~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~~~~ivyvSC~p~tlarDl~~L~---~-gY~l~~v~~~DmFPqT~Hv 353 (362)
T PRK05031 278 RLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQAYERILYISCNPETLCENLETLS---Q-THKVERFALFDQFPYTHHM 353 (362)
T ss_pred ccccccccCCCCCEEEECCCCCCCcHHHHHHHHccCCEEEEEeCHHHHHHHHHHHc---C-CcEEEEEEEcccCCCCCcE
Confidence 12589999999976655555433 357888888887643 2334443 2 3899999999999999887
Q ss_pred h
Q 022372 293 A 293 (298)
Q Consensus 293 ~ 293 (298)
+
T Consensus 354 E 354 (362)
T PRK05031 354 E 354 (362)
T ss_pred E
Confidence 6
No 130
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.08 E-value=2.5e-09 Score=95.90 Aligned_cols=138 Identities=15% Similarity=0.190 Sum_probs=101.6
Q ss_pred CCCCCCCCccccCCCccChHHHHHH---HHHHHHc-cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHH
Q 022372 116 TPPYVDSPMAIGYNATISAPHMHAT---CLQLLEE-NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS 191 (298)
Q Consensus 116 ~~aY~d~~~~~g~~~~is~p~~~~~---~l~~L~~-~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~ 191 (298)
.+.|.|-.+....|..|++|..... +++.+.. ....+..+||+|||+|..+..++..++ .++|+++|.++.++..
T Consensus 109 ~~~F~~l~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~L 187 (328)
T KOG2904|consen 109 SQPFGDLDLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKL 187 (328)
T ss_pred cCccCCceEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHH
Confidence 3566666666677888888875443 3444421 112345899999999999999999885 6899999999999999
Q ss_pred HHHHHHHhccCCccCCCCEEEEEc----CCCCCC-CCCCCccEEEECCCC------------------------------
Q 022372 192 SIQNIEKSAAAPLLKEGSLSVHVG----DGRKGW-PEFAPYDAIHVGAAA------------------------------ 236 (298)
Q Consensus 192 A~~~~~~~~~~~~l~~~~v~~~~g----D~~~~~-~~~~~fD~Ii~~~~~------------------------------ 236 (298)
|.+|.++..+. +++.+++- |..... ...+++|++++|.+.
T Consensus 188 a~eN~qr~~l~-----g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~ 262 (328)
T KOG2904|consen 188 AKENAQRLKLS-----GRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYD 262 (328)
T ss_pred HHHHHHHHhhc-----CceEEEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhH
Confidence 99999998876 67777744 433332 123789999999874
Q ss_pred --chhHHHHHhccccCcEEEEEECC
Q 022372 237 --PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 237 --~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.++..-+-+.|+|||.+.+.+..
T Consensus 263 ~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 263 NLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred HHHHHHHhhHhhcccCCeEEEEecc
Confidence 11223456899999999998873
No 131
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.08 E-value=1.2e-09 Score=97.20 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=78.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~f 227 (298)
..++.+|||+|||+|.++..+++.. .+++++|+++.+++.+++++...+ .+++++..+..... ...++|
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~f 115 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLG---ADVTGIDASEENIEVARLHALESG-------LKIDYRQTTAEELAAEHPGQF 115 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcC---CeEEEEcCCHHHHHHHHHHHHHcC-------CceEEEecCHHHhhhhcCCCc
Confidence 4568899999999999999998863 589999999999999998876543 25677777765443 123689
Q ss_pred cEEEECCCCc------hhHHHHHhccccCcEEEEEEC
Q 022372 228 DAIHVGAAAP------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 228 D~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|+|++...++ .+.+.+.+.|+|||++++...
T Consensus 116 D~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 116 DVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred cEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEec
Confidence 9999876654 345788899999999998654
No 132
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.08 E-value=2.8e-10 Score=98.16 Aligned_cols=96 Identities=17% Similarity=0.225 Sum_probs=77.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE-EEEcCCCCCC-CCCCCccEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS-VHVGDGRKGW-PEFAPYDAI 230 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~-~~~gD~~~~~-~~~~~fD~I 230 (298)
..|||||||+|..-.+.-- .|..+|+++|.++.|-+.+.+.+.++.. .++. ++++++.+.. .++++||+|
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~--~p~~svt~lDpn~~mee~~~ks~~E~k~------~~~~~fvva~ge~l~~l~d~s~DtV 149 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPW--KPINSVTCLDPNEKMEEIADKSAAEKKP------LQVERFVVADGENLPQLADGSYDTV 149 (252)
T ss_pred cceEEecccCCCCcccccC--CCCceEEEeCCcHHHHHHHHHHHhhccC------cceEEEEeechhcCcccccCCeeeE
Confidence 3579999999987544432 2557999999999999999999988643 4666 8999998765 356899999
Q ss_pred EECCCC------chhHHHHHhccccCcEEEEE
Q 022372 231 HVGAAA------PEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 231 i~~~~~------~~l~~~l~~~LkpGG~Lvi~ 256 (298)
+++.++ .+..+++.++|||||++++-
T Consensus 150 V~TlvLCSve~~~k~L~e~~rlLRpgG~iifi 181 (252)
T KOG4300|consen 150 VCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFI 181 (252)
T ss_pred EEEEEEeccCCHHHHHHHHHHhcCCCcEEEEE
Confidence 988876 34668999999999999983
No 133
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.08 E-value=7.4e-10 Score=101.18 Aligned_cols=106 Identities=20% Similarity=0.192 Sum_probs=81.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD~ 229 (298)
.+.+||++|||+|..+..+++.. +..+++++|+++++++.+++++..... .+..++++++.+|+...... .++||+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~--~~~~~~v~i~~~D~~~~l~~~~~~yDv 148 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAG--SYDDPRVDLQIDDGFKFLADTENTFDV 148 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcc--cccCCceEEEECchHHHHHhCCCCccE
Confidence 34699999999999998888763 346899999999999999998765331 13446889999888653221 368999
Q ss_pred EEECCCC----------chhHHHHHhccccCcEEEEEECC
Q 022372 230 IHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 230 Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+++... .+..+.+.+.|+|||++++..+.
T Consensus 149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~ 188 (270)
T TIGR00417 149 IIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQSES 188 (270)
T ss_pred EEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 9998752 23457888999999999986443
No 134
>PHA03412 putative methyltransferase; Provisional
Probab=99.08 E-value=1.8e-09 Score=96.11 Aligned_cols=93 Identities=12% Similarity=-0.040 Sum_probs=69.8
Q ss_pred CCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcC--CCcEEEEEeCCHHHHHHHHHHHHHhccCCcc
Q 022372 128 YNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG--PQGRAVGVEHIPELVVSSIQNIEKSAAAPLL 205 (298)
Q Consensus 128 ~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g--~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l 205 (298)
.|+..+.+.+...+... ...+.+|||+|||+|.++..+++... +..+|+++|+++.+++.|+++.
T Consensus 30 ~GqFfTP~~iAr~~~i~----~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~--------- 96 (241)
T PHA03412 30 LGAFFTPIGLARDFTID----ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV--------- 96 (241)
T ss_pred CCccCCCHHHHHHHHHh----ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc---------
Confidence 45666655555544321 22367999999999999999988642 2468999999999999999774
Q ss_pred CCCCEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 206 KEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 206 ~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
.++.++.+|...... .++||+|++|++.
T Consensus 97 --~~~~~~~~D~~~~~~-~~~FDlIIsNPPY 124 (241)
T PHA03412 97 --PEATWINADALTTEF-DTLFDMAISNPPF 124 (241)
T ss_pred --cCCEEEEcchhcccc-cCCccEEEECCCC
Confidence 357888999876433 3689999999986
No 135
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.06 E-value=1.9e-09 Score=81.03 Aligned_cols=95 Identities=27% Similarity=0.396 Sum_probs=75.1
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCccEEEE
Q 022372 154 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAIHV 232 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD~Ii~ 232 (298)
+++|+|||+|..+..+++ .+..+++++|.++..++.+++..... ...++++..+|..+... ..++||+|++
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~d~i~~ 72 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAAL------LADNVEVLKGDAEELPPEADESFDVIIS 72 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcc------cccceEEEEcChhhhccccCCceEEEEE
Confidence 489999999999999988 24479999999999999998543322 12578899998877553 3468999999
Q ss_pred CCCCch-------hHHHHHhccccCcEEEEE
Q 022372 233 GAAAPE-------IPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 233 ~~~~~~-------l~~~l~~~LkpGG~Lvi~ 256 (298)
+.+... +.+.+.+.|||||.+++.
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 73 DPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred ccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 998743 447778899999999875
No 136
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.06 E-value=9.9e-10 Score=96.88 Aligned_cols=99 Identities=18% Similarity=0.243 Sum_probs=78.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD~ 229 (298)
.+.+|||+|||+|.++..+++.. .+++++|.++.+++.+++++...+. .++++..+|..+.... .++||+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~---~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~D~ 115 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG---ANVTGIDASEENIEVAKLHAKKDPL------LKIEYRCTSVEDLAEKGAKSFDV 115 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCC------CceEEEeCCHHHhhcCCCCCccE
Confidence 46799999999999999988863 4799999999999999998876432 2678888887654332 368999
Q ss_pred EEECCCCc------hhHHHHHhccccCcEEEEEEC
Q 022372 230 IHVGAAAP------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 230 Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|++...++ .+.+.+.+.|+|||.+++...
T Consensus 116 i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 150 (224)
T TIGR01983 116 VTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTI 150 (224)
T ss_pred EEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEec
Confidence 99886654 345788899999999998654
No 137
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.04 E-value=1.2e-09 Score=94.84 Aligned_cols=97 Identities=23% Similarity=0.312 Sum_probs=72.7
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~ 225 (298)
.++++.+|||+|||+|.++..+++..+ ..++|+|+++++++.+++ .+++++.+|..+.. ...+
T Consensus 10 ~i~~~~~iLDiGcG~G~~~~~l~~~~~--~~~~giD~s~~~i~~a~~-------------~~~~~~~~d~~~~l~~~~~~ 74 (194)
T TIGR02081 10 LIPPGSRVLDLGCGDGELLALLRDEKQ--VRGYGIEIDQDGVLACVA-------------RGVNVIQGDLDEGLEAFPDK 74 (194)
T ss_pred hcCCCCEEEEeCCCCCHHHHHHHhccC--CcEEEEeCCHHHHHHHHH-------------cCCeEEEEEhhhcccccCCC
Confidence 356788999999999999998887632 578999999999988853 24567778876532 2346
Q ss_pred CccEEEECCCCchhH---HHHHhccccCcEEEEEECC
Q 022372 226 PYDAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi~v~~ 259 (298)
+||+|+++.+++++. +.+.+.++++|..++.+++
T Consensus 75 sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii~~p~ 111 (194)
T TIGR02081 75 SFDYVILSQTLQATRNPEEILDEMLRVGRHAIVSFPN 111 (194)
T ss_pred CcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEEEcCC
Confidence 899999999886653 3445566777777877765
No 138
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.04 E-value=4.4e-10 Score=106.47 Aligned_cols=128 Identities=12% Similarity=0.033 Sum_probs=98.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC---------
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--------- 223 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~--------- 223 (298)
.+|||++||+|.++..+++.. .+|+++|+++++++.|++|+..++. .+++++.+|..+....
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~------~~v~~~~~d~~~~~~~~~~~~~~~~ 269 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNI------DNVQIIRMSAEEFTQAMNGVREFRR 269 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCC------CcEEEEEcCHHHHHHHHhhcccccc
Confidence 479999999999999999875 4899999999999999999988664 5799999998653221
Q ss_pred -------CCCccEEEECCCCchhHHHH-HhccccCcEEEEEECCCc--eeEEEEEEcCCCCeEEEEeeeEEEeecccchh
Q 022372 224 -------FAPYDAIHVGAAAPEIPQAL-IDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYVPLTSRDA 293 (298)
Q Consensus 224 -------~~~fD~Ii~~~~~~~l~~~l-~~~LkpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~~~l~~v~fvPl~~~~~ 293 (298)
...||+|+++++-..+...+ ....+|++.++++..... .++..+. .+ ++.+.+.++..+|-|...+
T Consensus 270 ~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~~~~~ivYvsC~p~tlaRDl~~L~---~~-Y~l~~v~~~DmFP~T~HvE 345 (353)
T TIGR02143 270 LKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQAYERILYISCNPETLKANLEQLS---ET-HRVERFALFDQFPYTHHME 345 (353)
T ss_pred ccccccccCCCCEEEECCCCCCCcHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHh---cC-cEEEEEEEcccCCCCCcEE
Confidence 12389999999865544443 334468899998887643 3344443 23 8899999999999998876
No 139
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.04 E-value=1.4e-09 Score=94.83 Aligned_cols=111 Identities=23% Similarity=0.305 Sum_probs=85.2
Q ss_pred ChHHHHHHHHHHHHccCCC--CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE
Q 022372 133 SAPHMHATCLQLLEENLKP--GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL 210 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~--g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v 210 (298)
.+..+..+.+++|. +++ ..-|||||||+|..+..+... | ..++|+|+|+.|++.|.++--+ -
T Consensus 32 IQ~em~eRaLELLa--lp~~~~~~iLDIGCGsGLSg~vL~~~-G--h~wiGvDiSpsML~~a~~~e~e-----------g 95 (270)
T KOG1541|consen 32 IQAEMAERALELLA--LPGPKSGLILDIGCGSGLSGSVLSDS-G--HQWIGVDISPSMLEQAVERELE-----------G 95 (270)
T ss_pred ehHHHHHHHHHHhh--CCCCCCcEEEEeccCCCcchheeccC-C--ceEEeecCCHHHHHHHHHhhhh-----------c
Confidence 34567888899887 655 568999999999999988875 2 6899999999999999873211 2
Q ss_pred EEEEcCCCCCCC-CCCCccEEEECCCCchhH-----------------HHHHhccccCcEEEEEECC
Q 022372 211 SVHVGDGRKGWP-EFAPYDAIHVGAAAPEIP-----------------QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 211 ~~~~gD~~~~~~-~~~~fD~Ii~~~~~~~l~-----------------~~l~~~LkpGG~Lvi~v~~ 259 (298)
+++.+|.-++.+ ..++||.+++..++.++. ..++..|++|++.|+.+-.
T Consensus 96 dlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 96 DLILCDMGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred CeeeeecCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEecc
Confidence 567778777554 347999998888764322 4578899999999997643
No 140
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.04 E-value=3.6e-09 Score=103.45 Aligned_cols=105 Identities=25% Similarity=0.284 Sum_probs=87.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~f 227 (298)
.++|.+|||+++|.|.-|..++..++..+.+++.|+++..++..++|+.+.+. .|+.+...|..... ...+.|
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~------~nv~v~~~D~~~~~~~~~~~f 184 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV------SNVALTHFDGRVFGAALPETF 184 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEeCchhhhhhhchhhc
Confidence 68999999999999999999999987778999999999999999999998665 68888888876532 112579
Q ss_pred cEEEECCCCc----------------------------hhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|.|+++++.. ++.+++.+.|||||+||.+.-+
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 9999998852 2335667899999999987654
No 141
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.04 E-value=1.3e-09 Score=104.77 Aligned_cols=104 Identities=20% Similarity=0.132 Sum_probs=80.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC----CC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EF 224 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~----~~ 224 (298)
+.++.+|||+|||+|.++..++.. + ..+|+++|+++.+++.|++|+..+++. ..+++++.+|+.+... ..
T Consensus 218 ~~~g~rVLDlfsgtG~~~l~aa~~-g-a~~V~~VD~s~~al~~a~~N~~~Ngl~----~~~v~~i~~D~~~~l~~~~~~~ 291 (396)
T PRK15128 218 YVENKRVLNCFSYTGGFAVSALMG-G-CSQVVSVDTSQEALDIARQNVELNKLD----LSKAEFVRDDVFKLLRTYRDRG 291 (396)
T ss_pred hcCCCeEEEeccCCCHHHHHHHhC-C-CCEEEEEECCHHHHHHHHHHHHHcCCC----CCcEEEEEccHHHHHHHHHhcC
Confidence 346789999999999998776643 2 359999999999999999999987642 2479999999876432 23
Q ss_pred CCccEEEECCCCc---------------hhHHHHHhccccCcEEEEEEC
Q 022372 225 APYDAIHVGAAAP---------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 225 ~~fD~Ii~~~~~~---------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
++||+|+++++.- .+.....+.|+|||.++....
T Consensus 292 ~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 292 EKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 5899999998751 122356789999999997543
No 142
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.02 E-value=3.5e-09 Score=92.95 Aligned_cols=112 Identities=22% Similarity=0.315 Sum_probs=93.5
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+.+++.+.. +-..+++||+|.-+||.+..+|..++++++|+++|++++..+.+.+..+..+.. ..++++++++
T Consensus 61 ~g~fl~~li~-~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~-----~KI~~i~g~a 134 (237)
T KOG1663|consen 61 KGQFLQMLIR-LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVD-----HKITFIEGPA 134 (237)
T ss_pred HHHHHHHHHH-HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhcccc-----ceeeeeecch
Confidence 4555555542 445689999999999999999999988999999999999999998888888775 7899999998
Q ss_pred CCCC------CCCCCccEEEECCCCch---hHHHHHhccccCcEEEE
Q 022372 218 RKGW------PEFAPYDAIHVGAAAPE---IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~------~~~~~fD~Ii~~~~~~~---l~~~l~~~LkpGG~Lvi 255 (298)
.+.+ .+.++||.+|+++.... ..+++.+++|+||+|++
T Consensus 135 ~esLd~l~~~~~~~tfDfaFvDadK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 135 LESLDELLADGESGTFDFAFVDADKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred hhhHHHHHhcCCCCceeEEEEccchHHHHHHHHHHHhhcccccEEEE
Confidence 8632 13478999999998764 45788999999999997
No 143
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.00 E-value=1.5e-09 Score=111.41 Aligned_cols=105 Identities=15% Similarity=0.153 Sum_probs=83.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~f 227 (298)
..+|.+|||+|||+|.++..+++. |. .+|+++|+++.+++.|++|+..+++. ..+++++++|+.+... ..++|
T Consensus 536 ~~~g~rVLDlf~gtG~~sl~aa~~-Ga-~~V~~vD~s~~al~~a~~N~~~ng~~----~~~v~~i~~D~~~~l~~~~~~f 609 (702)
T PRK11783 536 MAKGKDFLNLFAYTGTASVHAALG-GA-KSTTTVDMSNTYLEWAERNFALNGLS----GRQHRLIQADCLAWLKEAREQF 609 (702)
T ss_pred hcCCCeEEEcCCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHhCCC----ccceEEEEccHHHHHHHcCCCc
Confidence 345789999999999999999986 33 47999999999999999999987652 2479999999865331 13589
Q ss_pred cEEEECCCC-----------------chhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAA-----------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~-----------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|+++++. ..+...+.+.|+|||.+++....
T Consensus 610 DlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~ 658 (702)
T PRK11783 610 DLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK 658 (702)
T ss_pred CEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 999999874 12345678899999999886544
No 144
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.98 E-value=7e-09 Score=96.73 Aligned_cols=96 Identities=23% Similarity=0.229 Sum_probs=70.6
Q ss_pred HHHHHHHHHcc-CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 138 HATCLQLLEEN-LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 138 ~~~~l~~L~~~-l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
...+++.+... ..++.+|||+|||+|.++..+++. + .+|+|+|+++.+++.|+++....... .....++++..+|
T Consensus 130 v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~-g--~~V~gvD~S~~ml~~A~~~~~~~~~~-~~~~~~~~f~~~D 205 (315)
T PLN02585 130 VEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE-G--AIVSASDISAAMVAEAERRAKEALAA-LPPEVLPKFEAND 205 (315)
T ss_pred HHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC-C--CEEEEEECCHHHHHHHHHHHHhcccc-cccccceEEEEcc
Confidence 44556666421 125789999999999999999986 3 68999999999999999988653210 0112467888888
Q ss_pred CCCCCCCCCCccEEEECCCCchhH
Q 022372 217 GRKGWPEFAPYDAIHVGAAAPEIP 240 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~~~l~ 240 (298)
.... .++||+|++..++.+++
T Consensus 206 l~~l---~~~fD~Vv~~~vL~H~p 226 (315)
T PLN02585 206 LESL---SGKYDTVTCLDVLIHYP 226 (315)
T ss_pred hhhc---CCCcCEEEEcCEEEecC
Confidence 6432 36899999998876654
No 145
>PHA03411 putative methyltransferase; Provisional
Probab=98.98 E-value=6.8e-09 Score=94.35 Aligned_cols=76 Identities=17% Similarity=0.130 Sum_probs=62.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
...+.+|||+|||+|.++..+++.. +..+|+++|+++.+++.+++++ ++++++++|....... .+||
T Consensus 62 ~~~~grVLDLGcGsGilsl~la~r~-~~~~V~gVDisp~al~~Ar~n~-----------~~v~~v~~D~~e~~~~-~kFD 128 (279)
T PHA03411 62 AHCTGKVLDLCAGIGRLSFCMLHRC-KPEKIVCVELNPEFARIGKRLL-----------PEAEWITSDVFEFESN-EKFD 128 (279)
T ss_pred cccCCeEEEcCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhC-----------cCCEEEECchhhhccc-CCCc
Confidence 3455799999999999999888874 3369999999999999998763 4678999998875433 6899
Q ss_pred EEEECCCCc
Q 022372 229 AIHVGAAAP 237 (298)
Q Consensus 229 ~Ii~~~~~~ 237 (298)
+|+++.+..
T Consensus 129 lIIsNPPF~ 137 (279)
T PHA03411 129 VVISNPPFG 137 (279)
T ss_pred EEEEcCCcc
Confidence 999999863
No 146
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.97 E-value=7.9e-09 Score=91.85 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=79.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh------ccCCccCCCCEEEEEcCCCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS------AAAPLLKEGSLSVHVGDGRKGWP 222 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~------~~~~~l~~~~v~~~~gD~~~~~~ 222 (298)
+.++.+||+.|||.|+....||+.. .+|+|+|+|+.+++.+.+..... +........++++.++|..+..+
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~G---~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~ 117 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSKG---VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPK 117 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhCC---CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCc
Confidence 4567899999999999999999984 68999999999999986532100 00001123579999999987543
Q ss_pred ---CCCCccEEEECCCCchhH--------HHHHhccccCcEEEEEE
Q 022372 223 ---EFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPV 257 (298)
Q Consensus 223 ---~~~~fD~Ii~~~~~~~l~--------~~l~~~LkpGG~Lvi~v 257 (298)
..++||.|+-.+.+..++ +.+.++|+|||.+++-.
T Consensus 118 ~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 118 IANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 125899998888775544 67888999999998844
No 147
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.97 E-value=4.7e-09 Score=96.02 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=73.3
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE
Q 022372 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 212 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~ 212 (298)
..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+|+++|+++++++.+++++.. +++++
T Consensus 26 ~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---------~~v~~ 91 (272)
T PRK00274 26 IDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---------DNLTI 91 (272)
T ss_pred CCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---------CceEE
Confidence 44556777888776 7888999999999999999999984 3899999999999999887532 58999
Q ss_pred EEcCCCCCCCCCCCccEEEECCCCc
Q 022372 213 HVGDGRKGWPEFAPYDAIHVGAAAP 237 (298)
Q Consensus 213 ~~gD~~~~~~~~~~fD~Ii~~~~~~ 237 (298)
+++|+.+...+.-.+|.|+++.+..
T Consensus 92 i~~D~~~~~~~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 92 IEGDALKVDLSELQPLKVVANLPYN 116 (272)
T ss_pred EEChhhcCCHHHcCcceEEEeCCcc
Confidence 9999887543321258999998864
No 148
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.95 E-value=5.5e-09 Score=96.60 Aligned_cols=98 Identities=23% Similarity=0.327 Sum_probs=80.7
Q ss_pred CCCcc-ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccC
Q 022372 128 YNATI-SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLK 206 (298)
Q Consensus 128 ~~~~i-s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~ 206 (298)
.|++. ..+.+...+++.+. +.++++|||||||+|.+|..+++.. .+|+++|+++++++.+++++...+..
T Consensus 14 ~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~---~~V~avEiD~~li~~l~~~~~~~~~~---- 84 (294)
T PTZ00338 14 FGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA---KKVIAIEIDPRMVAELKKRFQNSPLA---- 84 (294)
T ss_pred CCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC---CcEEEEECCHHHHHHHHHHHHhcCCC----
Confidence 34544 56778888888876 7889999999999999999999874 58999999999999999998765422
Q ss_pred CCCEEEEEcCCCCCCCCCCCccEEEECCCCc
Q 022372 207 EGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP 237 (298)
Q Consensus 207 ~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~ 237 (298)
++++++.+|+.+... ..||.|+++.+..
T Consensus 85 -~~v~ii~~Dal~~~~--~~~d~VvaNlPY~ 112 (294)
T PTZ00338 85 -SKLEVIEGDALKTEF--PYFDVCVANVPYQ 112 (294)
T ss_pred -CcEEEEECCHhhhcc--cccCEEEecCCcc
Confidence 689999999977433 4689999998863
No 149
>PRK01581 speE spermidine synthase; Validated
Probab=98.94 E-value=6.5e-09 Score=97.91 Aligned_cols=107 Identities=16% Similarity=0.136 Sum_probs=79.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH--HHHhccCCccCCCCEEEEEcCCCCCCCC-CCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN--IEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~--~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~ 226 (298)
....+||++|+|+|+.+..+.+. ++..+|+++|+++++++.|++. +.... ...+..++++++.+|+.+.... .+.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~-~~~~~DpRV~vvi~Da~~fL~~~~~~ 226 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLN-KSAFFDNRVNVHVCDAKEFLSSPSSL 226 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhc-cccCCCCceEEEECcHHHHHHhcCCC
Confidence 34579999999999988888876 3447999999999999999962 11110 0113458999999999874332 358
Q ss_pred ccEEEECCCCc-----------hhHHHHHhccccCcEEEEEEC
Q 022372 227 YDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 227 fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
||+|+++.+-+ ++.+.+.+.|+|||++++..+
T Consensus 227 YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 227 YDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred ccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 99999996432 245788999999999988544
No 150
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.94 E-value=2.1e-09 Score=104.09 Aligned_cols=145 Identities=22% Similarity=0.256 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
..++..+++.+. ..++++|||+=||.|.++..+|+.. .+|+|+|+++++++.|++|++.++. .|+++..
T Consensus 279 ekl~~~a~~~~~--~~~~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~n~i------~N~~f~~ 347 (432)
T COG2265 279 EKLYETALEWLE--LAGGERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAANGI------DNVEFIA 347 (432)
T ss_pred HHHHHHHHHHHh--hcCCCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEe
Confidence 345666667776 6678899999999999999999775 6999999999999999999999776 5799999
Q ss_pred cCCCCCCCC---CCCccEEEECCCCchhHH---HHHhccccCcEEEEEECCCc--eeEEEEEEcCCCCeEEEEeeeEEEe
Q 022372 215 GDGRKGWPE---FAPYDAIHVGAAAPEIPQ---ALIDQLKPGGRMVIPVGNIF--QDLKVVDKNQDGSLSIWSETSVRYV 286 (298)
Q Consensus 215 gD~~~~~~~---~~~fD~Ii~~~~~~~l~~---~l~~~LkpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~~~l~~v~fv 286 (298)
++..+..+. ...+|+|+++++-....+ .....++|..+++++++... .++..+. ++.+..+.+..+..+
T Consensus 348 ~~ae~~~~~~~~~~~~d~VvvDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~TlaRDl~~L~---~~gy~i~~v~~~DmF 424 (432)
T COG2265 348 GDAEEFTPAWWEGYKPDVVVVDPPRAGADREVLKQLAKLKPKRIVYVSCNPATLARDLAILA---STGYEIERVQPFDMF 424 (432)
T ss_pred CCHHHHhhhccccCCCCEEEECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHH---hCCeEEEEEEEeccC
Confidence 998864433 247899999998654443 33445789999999887643 2233332 233556778888999
Q ss_pred ecccchh
Q 022372 287 PLTSRDA 293 (298)
Q Consensus 287 Pl~~~~~ 293 (298)
|-|...+
T Consensus 425 P~T~HvE 431 (432)
T COG2265 425 PHTHHVE 431 (432)
T ss_pred CCccccC
Confidence 9887654
No 151
>PRK03612 spermidine synthase; Provisional
Probab=98.93 E-value=4.4e-09 Score=104.51 Aligned_cols=108 Identities=18% Similarity=0.179 Sum_probs=81.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHH--HHHhccCCccCCCCEEEEEcCCCCCCC-CCCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQN--IEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~--~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~ 226 (298)
+++.+|||+|+|+|..+..+++. ++..+++++|+++++++.++++ +..... ..++.++++++.+|+.+... ..++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~-~~~~dprv~vi~~Da~~~l~~~~~~ 373 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNG-GALDDPRVTVVNDDAFNWLRKLAEK 373 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhc-cccCCCceEEEEChHHHHHHhCCCC
Confidence 45679999999999999988875 3336999999999999999984 222110 11344789999999886432 2368
Q ss_pred ccEEEECCCCc-----------hhHHHHHhccccCcEEEEEECC
Q 022372 227 YDAIHVGAAAP-----------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 227 fD~Ii~~~~~~-----------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
||+|+++...+ ++.+.+.+.|||||++++....
T Consensus 374 fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 374 FDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred CCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCC
Confidence 99999997543 2457888999999999986543
No 152
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.91 E-value=1.5e-08 Score=91.66 Aligned_cols=106 Identities=19% Similarity=0.149 Sum_probs=81.9
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
+..+.+...+++.+. ..++.+|||+|||+|.++..+++.. ..|+++|+++++++.+++++.. .++++
T Consensus 12 l~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--------~~~v~ 78 (253)
T TIGR00755 12 LIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--------YERLE 78 (253)
T ss_pred CCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--------CCcEE
Confidence 455677888888876 7788999999999999999999985 4699999999999999887632 16899
Q ss_pred EEEcCCCCCCCCCCCcc---EEEECCCCchhHHHHHhcc-ccCcE
Q 022372 212 VHVGDGRKGWPEFAPYD---AIHVGAAAPEIPQALIDQL-KPGGR 252 (298)
Q Consensus 212 ~~~gD~~~~~~~~~~fD---~Ii~~~~~~~l~~~l~~~L-kpGG~ 252 (298)
++.+|+...... .|| .|+++.+...-...+.++| .+|+.
T Consensus 79 v~~~D~~~~~~~--~~d~~~~vvsNlPy~i~~~il~~ll~~~~~~ 121 (253)
T TIGR00755 79 VIEGDALKVDLP--DFPKQLKVVSNLPYNISSPLIFKLLEKPKFR 121 (253)
T ss_pred EEECchhcCChh--HcCCcceEEEcCChhhHHHHHHHHhccCCCc
Confidence 999999875443 466 8888888754444455555 44443
No 153
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.91 E-value=1.1e-08 Score=89.03 Aligned_cols=101 Identities=25% Similarity=0.326 Sum_probs=80.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC---CCCCCCcc
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WPEFAPYD 228 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~---~~~~~~fD 228 (298)
...+||||||.|.....+|+. .|+..++|+|+....+..+.+++.+.++ .|+.++.+|+... ..+.+++|
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~-~Pd~n~iGiE~~~~~v~~a~~~~~~~~l------~Nv~~~~~da~~~l~~~~~~~~v~ 90 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKR-NPDINFIGIEIRKKRVAKALRKAEKRGL------KNVRFLRGDARELLRRLFPPGSVD 90 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHH-STTSEEEEEES-HHHHHHHHHHHHHHTT------SSEEEEES-CTTHHHHHSTTTSEE
T ss_pred CCeEEEecCCCCHHHHHHHHH-CCCCCEEEEecchHHHHHHHHHHHhhcc------cceEEEEccHHHHHhhcccCCchh
Confidence 348899999999999999999 4789999999999999999999988655 7999999998872 23347999
Q ss_pred EEEECCCC--------------chhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAA--------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.|+++.+- +.+.+.+.+.|+|||.+.+-...
T Consensus 91 ~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 91 RIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp EEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred eEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 99999874 23457889999999999987655
No 154
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=2.5e-08 Score=85.34 Aligned_cols=95 Identities=24% Similarity=0.290 Sum_probs=73.5
Q ss_pred CccChHHHHHHHHHHHH-ccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC
Q 022372 130 ATISAPHMHATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208 (298)
Q Consensus 130 ~~is~p~~~~~~l~~L~-~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~ 208 (298)
|..+.+.+.++++.... ...-.|.+|+|+|||||.++...+-+ |+ .+|+++|+++++++.+++|..+.. .
T Consensus 23 QY~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l-Ga-~~V~~vdiD~~a~ei~r~N~~~l~-------g 93 (198)
T COG2263 23 QYRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL-GA-SRVLAVDIDPEALEIARANAEELL-------G 93 (198)
T ss_pred ecCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc-CC-cEEEEEecCHHHHHHHHHHHHhhC-------C
Confidence 33344455566555442 12335778999999999999888876 56 699999999999999999998722 6
Q ss_pred CEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 209 SLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 209 ~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
++.++.+|+.+.. .+||.++.|+++
T Consensus 94 ~v~f~~~dv~~~~---~~~dtvimNPPF 118 (198)
T COG2263 94 DVEFVVADVSDFR---GKFDTVIMNPPF 118 (198)
T ss_pred ceEEEEcchhhcC---CccceEEECCCC
Confidence 8999999998753 568999999886
No 155
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.90 E-value=1.8e-08 Score=91.45 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=75.9
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
+..+.+...+++.+. +.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++.. .++++
T Consensus 12 l~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~---~~v~~vEid~~~~~~l~~~~~~--------~~~v~ 78 (258)
T PRK14896 12 LIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA---KKVYAIELDPRLAEFLRDDEIA--------AGNVE 78 (258)
T ss_pred cCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHhcc--------CCCEE
Confidence 356677888888876 7788999999999999999999983 5899999999999999988743 16899
Q ss_pred EEEcCCCCCCCCCCCccEEEECCCCc
Q 022372 212 VHVGDGRKGWPEFAPYDAIHVGAAAP 237 (298)
Q Consensus 212 ~~~gD~~~~~~~~~~fD~Ii~~~~~~ 237 (298)
++++|+.+... ..||.|+++.+..
T Consensus 79 ii~~D~~~~~~--~~~d~Vv~NlPy~ 102 (258)
T PRK14896 79 IIEGDALKVDL--PEFNKVVSNLPYQ 102 (258)
T ss_pred EEEeccccCCc--hhceEEEEcCCcc
Confidence 99999987533 3589999998864
No 156
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.89 E-value=7.5e-09 Score=91.42 Aligned_cols=110 Identities=25% Similarity=0.334 Sum_probs=76.8
Q ss_pred HHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC-Ccc----------------
Q 022372 143 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA-PLL---------------- 205 (298)
Q Consensus 143 ~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~-~~l---------------- 205 (298)
..|+.....+..+|||||-+|.+|+.+|+.+++ ..++|+|+++.++..|+++++..... ..+
T Consensus 50 k~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is 128 (288)
T KOG2899|consen 50 KVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPIS 128 (288)
T ss_pred hhccccccCcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccccccc
Confidence 334434556788999999999999999999977 57999999999999999988542210 000
Q ss_pred -------------------CCCCEEEEEcCCCCCCCCCCCccEEEECCCC------------chhHHHHHhccccCcEEE
Q 022372 206 -------------------KEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA------------PEIPQALIDQLKPGGRMV 254 (298)
Q Consensus 206 -------------------~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~------------~~l~~~l~~~LkpGG~Lv 254 (298)
...|..+...|.. +.....||+|+|-... ..+++.+.++|.|||+||
T Consensus 129 ~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv 206 (288)
T KOG2899|consen 129 QRNEADRAFTTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV 206 (288)
T ss_pred ccccccccccccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE
Confidence 0011222222222 2234579999877653 356688999999999999
Q ss_pred E
Q 022372 255 I 255 (298)
Q Consensus 255 i 255 (298)
+
T Consensus 207 v 207 (288)
T KOG2899|consen 207 V 207 (288)
T ss_pred E
Confidence 8
No 157
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.85 E-value=5e-08 Score=84.61 Aligned_cols=103 Identities=15% Similarity=0.030 Sum_probs=78.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC---CC-C
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EF-A 225 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~---~~-~ 225 (298)
-++.+|||++||+|.++..++.+ |. .+|+++|.++.+++.+++|++..+.. .+++++.+|+..... .. .
T Consensus 48 ~~g~~vLDLfaGsG~lglea~sr-ga-~~v~~vE~~~~a~~~~~~N~~~~~~~-----~~~~~~~~D~~~~l~~~~~~~~ 120 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSR-GA-KVAFLEEDDRKANQTLKENLALLKSG-----EQAEVVRNSALRALKFLAKKPT 120 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhC-CC-CEEEEEeCCHHHHHHHHHHHHHhCCc-----ccEEEEehhHHHHHHHhhccCC
Confidence 35789999999999999999988 44 48999999999999999999887653 478999999854321 11 2
Q ss_pred CccEEEECCCCch-----hHHHHH--hccccCcEEEEEECC
Q 022372 226 PYDAIHVGAAAPE-----IPQALI--DQLKPGGRMVIPVGN 259 (298)
Q Consensus 226 ~fD~Ii~~~~~~~-----l~~~l~--~~LkpGG~Lvi~v~~ 259 (298)
.||+|+.+++... +.+.+. .+|+++|.+++....
T Consensus 121 ~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~~~~iiv~E~~~ 161 (189)
T TIGR00095 121 FDNVIYLDPPFFNGALQALLELCENNWILEDTVLIVVEEDR 161 (189)
T ss_pred CceEEEECcCCCCCcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence 4899999998742 223332 368999999886543
No 158
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.85 E-value=2.2e-08 Score=87.51 Aligned_cols=100 Identities=27% Similarity=0.341 Sum_probs=76.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
..++|..|+|+.||.|+++..+|+. +...+|+++|++|..++..++|++.+++. +++...++|..+... ...|
T Consensus 98 ~v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~-----~~i~~~~~D~~~~~~-~~~~ 170 (200)
T PF02475_consen 98 LVKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVE-----NRIEVINGDAREFLP-EGKF 170 (200)
T ss_dssp C--TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-T-----TTEEEEES-GGG----TT-E
T ss_pred cCCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCC-----CeEEEEcCCHHHhcC-cccc
Confidence 4688999999999999999999986 34478999999999999999999998875 789999999988766 5899
Q ss_pred cEEEECCCC--chhHHHHHhccccCcEEE
Q 022372 228 DAIHVGAAA--PEIPQALIDQLKPGGRMV 254 (298)
Q Consensus 228 D~Ii~~~~~--~~l~~~l~~~LkpGG~Lv 254 (298)
|.|+.+.+. .+..+.+.+.+|+||.+-
T Consensus 171 drvim~lp~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 171 DRVIMNLPESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEE--TSSGGGGHHHHHHHEEEEEEEE
T ss_pred CEEEECChHHHHHHHHHHHHHhcCCcEEE
Confidence 999999875 357788999999999874
No 159
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.85 E-value=1.4e-08 Score=89.98 Aligned_cols=113 Identities=29% Similarity=0.371 Sum_probs=80.2
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH-hcc-----CCccCC
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK-SAA-----APLLKE 207 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~-~~~-----~~~l~~ 207 (298)
.|.+... ++.+. .+++.+||+.|||.|+-...||+.. .+|+|+|+++.+++.+.+.... ... ......
T Consensus 23 ~p~L~~~-~~~l~--~~~~~rvLvPgCG~g~D~~~La~~G---~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~ 96 (218)
T PF05724_consen 23 NPALVEY-LDSLA--LKPGGRVLVPGCGKGYDMLWLAEQG---HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQA 96 (218)
T ss_dssp THHHHHH-HHHHT--TSTSEEEEETTTTTSCHHHHHHHTT---EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETT
T ss_pred CHHHHHH-HHhcC--CCCCCeEEEeCCCChHHHHHHHHCC---CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecC
Confidence 3444433 33344 6778899999999999999999983 6999999999999998543221 110 001223
Q ss_pred CCEEEEEcCCCCCCCCC-CCccEEEECCCCchhH--------HHHHhccccCcE
Q 022372 208 GSLSVHVGDGRKGWPEF-APYDAIHVGAAAPEIP--------QALIDQLKPGGR 252 (298)
Q Consensus 208 ~~v~~~~gD~~~~~~~~-~~fD~Ii~~~~~~~l~--------~~l~~~LkpGG~ 252 (298)
++|++.++|.....+.. ++||+|+--..+..++ +.+.++|||||.
T Consensus 97 ~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~ 150 (218)
T PF05724_consen 97 GRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGR 150 (218)
T ss_dssp SSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEE
T ss_pred CceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCc
Confidence 67899999998854432 4799999888775444 678899999999
No 160
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.83 E-value=4.4e-08 Score=91.31 Aligned_cols=113 Identities=27% Similarity=0.289 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
|.....+..+. ++++|..|||-=||||.+.....-. | .+++|.|++..|++-|+.|++..+. ....+..
T Consensus 183 P~lAR~mVNLa--~v~~G~~vlDPFcGTGgiLiEagl~-G--~~viG~Did~~mv~gak~Nl~~y~i------~~~~~~~ 251 (347)
T COG1041 183 PRLARAMVNLA--RVKRGELVLDPFCGTGGILIEAGLM-G--ARVIGSDIDERMVRGAKINLEYYGI------EDYPVLK 251 (347)
T ss_pred HHHHHHHHHHh--ccccCCEeecCcCCccHHHHhhhhc-C--ceEeecchHHHHHhhhhhhhhhhCc------CceeEEE
Confidence 44444444444 4899999999999999998887776 4 7999999999999999999998664 4555555
Q ss_pred c-CCCCCCCCCCCccEEEECCCC---------------chhHHHHHhccccCcEEEEEEC
Q 022372 215 G-DGRKGWPEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 215 g-D~~~~~~~~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
. |+........++|.|+++++. .+..+.+.+.||+||+++++.+
T Consensus 252 ~~Da~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 252 VLDATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred ecccccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 5 888776665679999999874 2344778899999999999887
No 161
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=7.8e-08 Score=91.22 Aligned_cols=106 Identities=26% Similarity=0.359 Sum_probs=85.8
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC---CCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~-~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~---~~~ 223 (298)
..++|.+|||+.++.|.-|.+++++..+. ..|+++|.++..+...++|+++.+. .|+.++..|.... .+.
T Consensus 153 ~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~------~nv~~~~~d~~~~~~~~~~ 226 (355)
T COG0144 153 DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV------RNVIVVNKDARRLAELLPG 226 (355)
T ss_pred CCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC------CceEEEecccccccccccc
Confidence 38899999999999999999999997553 4569999999999999999999665 6788888887642 233
Q ss_pred CCCccEEEECCCC----------------------------chhHHHHHhccccCcEEEEEECC
Q 022372 224 FAPYDAIHVGAAA----------------------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 224 ~~~fD~Ii~~~~~----------------------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.++||.|+++++. .++.+...+.|||||+|+.+.-.
T Consensus 227 ~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 227 GEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred cCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 2369999999985 12335677899999999997643
No 162
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.82 E-value=6.6e-09 Score=91.33 Aligned_cols=111 Identities=25% Similarity=0.235 Sum_probs=88.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~~ 226 (298)
.+.|.+|||.+.|-||.++..++.. . .+|+.+|.++..++.|+-|- ++..+...+++++.||..+.. .++++
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A-~~VitvEkdp~VLeLa~lNP----wSr~l~~~~i~iilGD~~e~V~~~~D~s 205 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-A-IHVITVEKDPNVLELAKLNP----WSRELFEIAIKIILGDAYEVVKDFDDES 205 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-C-cEEEEEeeCCCeEEeeccCC----CCccccccccEEecccHHHHHhcCCccc
Confidence 5679999999999999999998874 2 49999999999999987543 333344457899999987632 24478
Q ss_pred ccEEEECCCC---------chhHHHHHhccccCcEEEEEECCCceeEE
Q 022372 227 YDAIHVGAAA---------PEIPQALIDQLKPGGRMVIPVGNIFQDLK 265 (298)
Q Consensus 227 fD~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi~v~~~~q~~~ 265 (298)
||+|+-+++- +++.+++++.|||||+|+--++++.+..+
T Consensus 206 fDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ryr 253 (287)
T COG2521 206 FDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRYR 253 (287)
T ss_pred cceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccc
Confidence 9999988763 35568999999999999999998765433
No 163
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.81 E-value=2.7e-08 Score=83.33 Aligned_cols=123 Identities=20% Similarity=0.305 Sum_probs=93.5
Q ss_pred CCCCCccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 119 YVDSPMAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 119 Y~d~~~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
|.+.|..+|. -..+++....+|...+. ...|..|||+|.|+|.+|..+.+..-+...++++|.+++.+....+.+
T Consensus 19 wi~~PrtVGa-I~PsSs~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-- 93 (194)
T COG3963 19 WIDNPRTVGA-ILPSSSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-- 93 (194)
T ss_pred HhcCCceeee-ecCCcHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC--
Confidence 4456666662 33455666677777776 778889999999999999888777555679999999999999887664
Q ss_pred hccCCccCCCCEEEEEcCCCCCC-----CCCCCccEEEECCCCch--------hHHHHHhccccCcEEEE
Q 022372 199 SAAAPLLKEGSLSVHVGDGRKGW-----PEFAPYDAIHVGAAAPE--------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 199 ~~~~~~l~~~~v~~~~gD~~~~~-----~~~~~fD~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi 255 (298)
+.++++.||+.+.- .....||.|++..++.. +.+.+...|.+||.++.
T Consensus 94 ---------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 94 ---------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred ---------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEE
Confidence 45668888876532 23357999999988754 44788889999999887
No 164
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.81 E-value=5e-08 Score=83.87 Aligned_cols=117 Identities=22% Similarity=0.214 Sum_probs=80.9
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCc--------EEEEEeCCHHHHHHHHHHHHHhccCC
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQG--------RAVGVEHIPELVVSSIQNIEKSAAAP 203 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~--------~V~giD~s~~~l~~A~~~~~~~~~~~ 203 (298)
...|.+.+.|+.... .+++..|||--||+|.+....+....... +++|.|+++++++.|++|++..+..
T Consensus 11 ~L~~~lA~~ll~la~--~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~- 87 (179)
T PF01170_consen 11 PLRPTLAAALLNLAG--WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVE- 87 (179)
T ss_dssp SS-HHHHHHHHHHTT----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-C-
T ss_pred CCCHHHHHHHHHHhC--CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccC-
Confidence 345666666666665 78899999999999999988877753322 3899999999999999999987764
Q ss_pred ccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC--------------chhHHHHHhccccCcEEEE
Q 022372 204 LLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------------PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 204 ~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi 255 (298)
..+.+.+.|..+.....+++|.|+++.+. ..+.+++.+.|++...+++
T Consensus 88 ----~~i~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 88 ----DYIDFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp ----GGEEEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred ----CceEEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 57899999988766444789999999986 1233667778898444443
No 165
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.79 E-value=2.3e-09 Score=93.97 Aligned_cols=111 Identities=21% Similarity=0.259 Sum_probs=82.2
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE
Q 022372 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV 212 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~ 212 (298)
+-|...+.++..+. ..+-.++||+|||||..+..+..+. .+.+|+|+|+.|++.|.++-.- + ++
T Consensus 109 ~vP~~l~emI~~~~--~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eKg~Y---------D--~L 172 (287)
T COG4976 109 SVPELLAEMIGKAD--LGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEKGLY---------D--TL 172 (287)
T ss_pred ccHHHHHHHHHhcc--CCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhccch---------H--HH
Confidence 35666777777665 4556799999999999999998886 6899999999999999765211 1 12
Q ss_pred EEcCCCCCC--CCCCCccEEEECCCC------chhHHHHHhccccCcEEEEEECC
Q 022372 213 HVGDGRKGW--PEFAPYDAIHVGAAA------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 213 ~~gD~~~~~--~~~~~fD~Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+++..... ....+||+|....++ +.++..+...|+|||.+.+++.+
T Consensus 173 ~~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~ 227 (287)
T COG4976 173 YVAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVET 227 (287)
T ss_pred HHHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecc
Confidence 233332221 234689999887765 55667788999999999999865
No 166
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.78 E-value=5.7e-08 Score=86.44 Aligned_cols=100 Identities=24% Similarity=0.318 Sum_probs=85.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCCCCCccE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEFAPYDA 229 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~~~~fD~ 229 (298)
..+||||||.|.....+|+. .|+..++|||+....+..|.+.+.+.++ +|+.++++|+.. ...+.++.|.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~-nP~~nfiGiEi~~~~v~~~l~k~~~~~l------~Nlri~~~DA~~~l~~~~~~~sl~~ 122 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKK-NPEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAVEVLDYLIPDGSLDK 122 (227)
T ss_pred cEEEEECCCCCHHHHHHHHH-CCCCCEEEEEEehHHHHHHHHHHHHcCC------CcEEEEcCCHHHHHHhcCCCCCeeE
Confidence 48999999999999999999 5888999999999999999999988664 599999999875 3345469999
Q ss_pred EEECCCC--------------chhHHHHHhccccCcEEEEEECC
Q 022372 230 IHVGAAA--------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 230 Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+++.+- +...+.+.+.|||||.+.+...+
T Consensus 123 I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 123 IYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred EEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecC
Confidence 9999874 24557889999999999997765
No 167
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.77 E-value=6.8e-08 Score=92.43 Aligned_cols=112 Identities=20% Similarity=0.216 Sum_probs=85.2
Q ss_pred HHHHHHHHHccCC-CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 138 HATCLQLLEENLK-PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 138 ~~~~l~~L~~~l~-~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
...+++.+. .. ++.+|||++||+|..+..++...+ ..+|+++|+++.+++.+++|++.++. .++++.++|
T Consensus 45 ~~~v~~~~~--~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~------~~~~v~~~D 115 (382)
T PRK04338 45 SVLVLRAFG--PKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGL------ENEKVFNKD 115 (382)
T ss_pred HHHHHHHHH--hhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCC------CceEEEhhh
Confidence 344445443 22 346899999999999999998754 35899999999999999999988765 467788999
Q ss_pred CCCCCCCCCCccEEEECCCC--chhHHHHHhccccCcEEEEEEC
Q 022372 217 GRKGWPEFAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 217 ~~~~~~~~~~fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+.......+.||+|++++.- ..+.+.+.+.+++||.+.++..
T Consensus 116 a~~~l~~~~~fD~V~lDP~Gs~~~~l~~al~~~~~~gilyvSAt 159 (382)
T PRK04338 116 ANALLHEERKFDVVDIDPFGSPAPFLDSAIRSVKRGGLLCVTAT 159 (382)
T ss_pred HHHHHhhcCCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEEec
Confidence 86543313579999999742 2444666788999999999843
No 168
>PLN02823 spermine synthase
Probab=98.76 E-value=6.9e-08 Score=90.80 Aligned_cols=105 Identities=17% Similarity=0.188 Sum_probs=80.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD~ 229 (298)
...+||.+|+|.|..+..+.+.. +..+++.+|+++++++.|++.+....- .+..++++++.+|+...... .++||+
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~--~~~dprv~v~~~Da~~~L~~~~~~yDv 179 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNRE--AFCDKRLELIINDARAELEKRDEKFDV 179 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccc--cccCCceEEEEChhHHHHhhCCCCccE
Confidence 44799999999999998888763 346899999999999999998754321 13458999999999875432 358999
Q ss_pred EEECCCC------------chhHH-HHHhccccCcEEEEEEC
Q 022372 230 IHVGAAA------------PEIPQ-ALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 230 Ii~~~~~------------~~l~~-~l~~~LkpGG~Lvi~v~ 258 (298)
|+++..- .+..+ .+.+.|+|||++++..+
T Consensus 180 Ii~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~ 221 (336)
T PLN02823 180 IIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAG 221 (336)
T ss_pred EEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEecc
Confidence 9998432 12345 78889999999997654
No 169
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.76 E-value=5.7e-08 Score=92.74 Aligned_cols=105 Identities=21% Similarity=0.203 Sum_probs=86.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC----CC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EF 224 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~----~~ 224 (298)
.+ |++|||+-|=||.++.+.|.. |. .+|++||.|...++.|++|+..+++. ..++.++++|+.+.+. ..
T Consensus 216 ~~-GkrvLNlFsYTGgfSv~Aa~g-GA-~~vt~VD~S~~al~~a~~N~~LNg~~----~~~~~~i~~Dvf~~l~~~~~~g 288 (393)
T COG1092 216 AA-GKRVLNLFSYTGGFSVHAALG-GA-SEVTSVDLSKRALEWARENAELNGLD----GDRHRFIVGDVFKWLRKAERRG 288 (393)
T ss_pred cc-CCeEEEecccCcHHHHHHHhc-CC-CceEEEeccHHHHHHHHHHHHhcCCC----ccceeeehhhHHHHHHHHHhcC
Confidence 45 999999999999999999986 33 59999999999999999999998753 3678999999986442 23
Q ss_pred CCccEEEECCCC---------------chhHHHHHhccccCcEEEEEECCC
Q 022372 225 APYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 225 ~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.+||+|+.+++. ..+...+.+.|+|||.+++.....
T Consensus 289 ~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~ 339 (393)
T COG1092 289 EKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR 339 (393)
T ss_pred CcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 489999999974 234477889999999999976543
No 170
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.75 E-value=6.8e-08 Score=90.15 Aligned_cols=81 Identities=21% Similarity=0.302 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-ccCCccCCCCEEEEE-cCCC---CCC-CCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHV-GDGR---KGW-PEF 224 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~-~~~~~l~~~~v~~~~-gD~~---~~~-~~~ 224 (298)
++.++||||||+|.+...++... +..+++|+|+++.+++.|++|+..+ ++. .+++++. .+.. ... ...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~-~~~~~~atDId~~Al~~A~~Nv~~Np~l~-----~~I~~~~~~~~~~i~~~i~~~~ 187 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHE-YGWRFVGSDIDPQALASAQAIISANPGLN-----GAIRLRLQKDSKAIFKGIIHKN 187 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhccCCc-----CcEEEEEccchhhhhhcccccC
Confidence 45799999999998888888764 4579999999999999999999987 554 5777764 2322 221 124
Q ss_pred CCccEEEECCCCc
Q 022372 225 APYDAIHVGAAAP 237 (298)
Q Consensus 225 ~~fD~Ii~~~~~~ 237 (298)
+.||+|+|++++.
T Consensus 188 ~~fDlivcNPPf~ 200 (321)
T PRK11727 188 ERFDATLCNPPFH 200 (321)
T ss_pred CceEEEEeCCCCc
Confidence 6899999999974
No 171
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.74 E-value=5.5e-08 Score=91.29 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=73.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCC-c--c-CCCCEEEEEcCCCCC-----C
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAP-L--L-KEGSLSVHVGDGRKG-----W 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~-~--l-~~~~v~~~~gD~~~~-----~ 221 (298)
++.+|||+|||-|.-..-+... +. ..++|+|++.+.++.|+++.....-.. . . ..-...++.+|.... +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 7899999999987755555543 22 699999999999999999984322100 0 0 012467888887642 2
Q ss_pred CC-CCCccEEEECCCCch----------hHHHHHhccccCcEEEEEECCCc
Q 022372 222 PE-FAPYDAIHVGAAAPE----------IPQALIDQLKPGGRMVIPVGNIF 261 (298)
Q Consensus 222 ~~-~~~fD~Ii~~~~~~~----------l~~~l~~~LkpGG~Lvi~v~~~~ 261 (298)
.+ ..+||+|-+..++|. +.+++...|||||+++.++++..
T Consensus 140 ~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 140 PPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp SSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred cccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 22 258999999998753 44788899999999999998764
No 172
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.73 E-value=7.1e-08 Score=84.02 Aligned_cols=109 Identities=24% Similarity=0.255 Sum_probs=79.0
Q ss_pred HHHHHHccCCCCC-EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC
Q 022372 141 CLQLLEENLKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK 219 (298)
Q Consensus 141 ~l~~L~~~l~~g~-~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~ 219 (298)
+++.|...+++.. +|||||||||..+.++|+.+ |..+..--|.++......+..+...+..... ..+ .-|+..
T Consensus 14 Il~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~l-P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~--~P~---~lDv~~ 87 (204)
T PF06080_consen 14 ILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQAL-PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR--PPL---ALDVSA 87 (204)
T ss_pred HHHHHHHHhCccCceEEEEcCCccHHHHHHHHHC-CCCEEcCCCCChHHHhhHHHHHHhcCCcccC--CCe---EeecCC
Confidence 4455544455555 49999999999999999997 6678999999999988888877776553111 122 234433
Q ss_pred C-C--C-----CCCCccEEEECCCCc--------hhHHHHHhccccCcEEEE
Q 022372 220 G-W--P-----EFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~-~--~-----~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi 255 (298)
. + . ..++||+|++...++ .+++.+.+.|++||.|++
T Consensus 88 ~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~ 139 (204)
T PF06080_consen 88 PPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFL 139 (204)
T ss_pred CCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEE
Confidence 2 2 1 235899999998874 455778899999999998
No 173
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=3.9e-08 Score=80.60 Aligned_cols=103 Identities=17% Similarity=0.208 Sum_probs=83.5
Q ss_pred cccCCCccChHHHHHHHHHHHHccC--CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC
Q 022372 125 AIGYNATISAPHMHATCLQLLEENL--KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 202 (298)
Q Consensus 125 ~~g~~~~is~p~~~~~~l~~L~~~l--~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~ 202 (298)
.++-.+.++.|++.+.|+..+..-. -+|++++|+|||.|-++...+-. ++ ..|+|+|+++++++.+++|..+..+
T Consensus 20 k~~LEQY~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~-~~-e~vlGfDIdpeALEIf~rNaeEfEv- 96 (185)
T KOG3420|consen 20 KLLLEQYPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMP-KN-ESVLGFDIDPEALEIFTRNAEEFEV- 96 (185)
T ss_pred chhhhhCCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcC-CC-ceEEeeecCHHHHHHHhhchHHhhh-
Confidence 3455677888999999998875422 36889999999999998554433 33 6899999999999999999987553
Q ss_pred CccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 203 PLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 203 ~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
++++++.|..+..+..+.||..+.+.++
T Consensus 97 ------qidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 97 ------QIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred ------hhheeeeeccchhccCCeEeeEEecCCC
Confidence 5689999998877777899999999886
No 174
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.70 E-value=1.2e-07 Score=85.17 Aligned_cols=101 Identities=24% Similarity=0.286 Sum_probs=82.7
Q ss_pred ccccCCCccCh-HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC
Q 022372 124 MAIGYNATISA-PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 202 (298)
Q Consensus 124 ~~~g~~~~is~-p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~ 202 (298)
+..+.|+++.. |.+...+.+... +++++.|||+|.|||.+|..|.+.. .+|+++|+++.|++...++.+....+
T Consensus 32 fnkd~GQHilkNp~v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~~---kkVvA~E~Dprmvael~krv~gtp~~ 106 (315)
T KOG0820|consen 32 FNKDFGQHILKNPLVIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEAG---KKVVAVEIDPRMVAELEKRVQGTPKS 106 (315)
T ss_pred cccccchhhhcCHHHHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHhc---CeEEEEecCcHHHHHHHHHhcCCCcc
Confidence 44566777744 677778888776 9999999999999999999999985 69999999999999999988664433
Q ss_pred CccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC
Q 022372 203 PLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA 236 (298)
Q Consensus 203 ~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~ 236 (298)
+..++++||...... ..||.++++.+.
T Consensus 107 -----~kLqV~~gD~lK~d~--P~fd~cVsNlPy 133 (315)
T KOG0820|consen 107 -----GKLQVLHGDFLKTDL--PRFDGCVSNLPY 133 (315)
T ss_pred -----ceeeEEecccccCCC--cccceeeccCCc
Confidence 678999999887532 359999998764
No 175
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.70 E-value=1.3e-08 Score=96.55 Aligned_cols=141 Identities=20% Similarity=0.298 Sum_probs=88.1
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
++..+++.+. ..++ +|||+-||.|.++..||+.+ .+|+|+|+++++++.|++|+..++. .|++++.++
T Consensus 185 l~~~~~~~l~--~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i------~n~~f~~~~ 252 (352)
T PF05958_consen 185 LYEQALEWLD--LSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGI------DNVEFIRGD 252 (352)
T ss_dssp HHHHHHHHCT--T-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--------SEEEEE--
T ss_pred HHHHHHHHhh--cCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCC------CcceEEEee
Confidence 4444555554 4444 89999999999999999886 6999999999999999999999876 689999876
Q ss_pred CCCCCC----------------CCCCccEEEECCCCchhHHHHHhcc-ccCcEEEEEECCCc--eeEEEEEEcCCCCeEE
Q 022372 217 GRKGWP----------------EFAPYDAIHVGAAAPEIPQALIDQL-KPGGRMVIPVGNIF--QDLKVVDKNQDGSLSI 277 (298)
Q Consensus 217 ~~~~~~----------------~~~~fD~Ii~~~~~~~l~~~l~~~L-kpGG~Lvi~v~~~~--q~~~~~~~~~~g~~~~ 277 (298)
+.+... ....+|+|+++++-..+.+.+.+.+ ++.=.+++++.... .++..+. .| +..
T Consensus 253 ~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~~~~~ivYvSCnP~tlaRDl~~L~---~~-y~~ 328 (352)
T PF05958_consen 253 AEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIKKLKRIVYVSCNPATLARDLKILK---EG-YKL 328 (352)
T ss_dssp SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHHHSSEEEEEES-HHHHHHHHHHHH---CC-EEE
T ss_pred ccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHhcCCeEEEEECCHHHHHHHHHHHh---hc-CEE
Confidence 542110 1136899999998654443333322 34445555554432 2333332 23 888
Q ss_pred EEeeeEEEeecccchh
Q 022372 278 WSETSVRYVPLTSRDA 293 (298)
Q Consensus 278 ~~l~~v~fvPl~~~~~ 293 (298)
+.+.++..+|-|...+
T Consensus 329 ~~v~~~DmFP~T~HvE 344 (352)
T PF05958_consen 329 EKVQPVDMFPQTHHVE 344 (352)
T ss_dssp EEEEEE-SSTTSS--E
T ss_pred EEEEEeecCCCCCcEE
Confidence 9999999999998876
No 176
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=3.2e-07 Score=77.94 Aligned_cols=99 Identities=19% Similarity=0.283 Sum_probs=81.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEE
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 231 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii 231 (298)
..-++|||||+|..+..|++..++.....++|+++.+++..++.++.++ .+++.++.|...+... ++.|+++
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~-------~~~~~V~tdl~~~l~~-~~VDvLv 115 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR-------VHIDVVRTDLLSGLRN-ESVDVLV 115 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC-------CccceeehhHHhhhcc-CCccEEE
Confidence 5679999999999999999999888899999999999999888877655 4578899998888776 8999999
Q ss_pred ECCCC---------------------------chhHHHHHhccccCcEEEEEEC
Q 022372 232 VGAAA---------------------------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 232 ~~~~~---------------------------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.+.+. ..++..+-+.|.|.|.+++..-
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~ 169 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL 169 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence 99874 1122344567889999998553
No 177
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.66 E-value=1e-07 Score=87.80 Aligned_cols=104 Identities=27% Similarity=0.347 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~~ 226 (298)
..+|.+|||++++.|.-|..+++..+..+.+++.|+++..+...++++++.+. .++.+...|..... .....
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~------~~v~~~~~D~~~~~~~~~~~~ 156 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV------FNVIVINADARKLDPKKPESK 156 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-------SSEEEEESHHHHHHHHHHTTT
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC------ceEEEEeeccccccccccccc
Confidence 78999999999999999999999987789999999999999999999998654 68888887776541 22246
Q ss_pred ccEEEECCCC----------------------------chhHHHHHhcc----ccCcEEEEEEC
Q 022372 227 YDAIHVGAAA----------------------------PEIPQALIDQL----KPGGRMVIPVG 258 (298)
Q Consensus 227 fD~Ii~~~~~----------------------------~~l~~~l~~~L----kpGG~Lvi~v~ 258 (298)
||.|+++++. .++.+.+.+.+ ||||++|.+.-
T Consensus 157 fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 157 FDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp EEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred cchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 9999999875 12335677899 99999999774
No 178
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.65 E-value=1.9e-07 Score=79.80 Aligned_cols=107 Identities=24% Similarity=0.300 Sum_probs=69.1
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----~~ 223 (298)
...++.+|||+|||+|..+..+++.. ...+|+..|.++ .++..+.|++.++. ....++.+..-|..+.. ..
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~ 116 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLE 116 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS
T ss_pred hhcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccc
Confidence 35678899999999999999999984 337999999998 99999999987652 11256777776654321 22
Q ss_pred CCCccEEEECCCC------chhHHHHHhccccCcEEEEEECC
Q 022372 224 FAPYDAIHVGAAA------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 224 ~~~fD~Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
..+||+|+....+ +.+.+.+.+.|+++|.+++....
T Consensus 117 ~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~ 158 (173)
T PF10294_consen 117 PHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKR 158 (173)
T ss_dssp -SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred cccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence 3589999888775 34557788899999997775543
No 179
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.63 E-value=5.9e-07 Score=77.53 Aligned_cols=104 Identities=25% Similarity=0.299 Sum_probs=83.6
Q ss_pred CCCCC-EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~-~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
++... +++|+|+|.|.-+..+|-.. |+.+++.+|.....+++.+.-....++ +|++++++.+.+ .....+|
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L------~nv~v~~~R~E~-~~~~~~f 116 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGL------SNVEVINGRAEE-PEYRESF 116 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-------SSEEEEES-HHH-TTTTT-E
T ss_pred hccCCceEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCC------CCEEEEEeeecc-cccCCCc
Confidence 34444 89999999999999999985 778999999999999999888887554 799999999877 3344789
Q ss_pred cEEEECCCCc--hhHHHHHhccccCcEEEEEECCC
Q 022372 228 DAIHVGAAAP--EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 228 D~Ii~~~~~~--~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|+|++-+..+ .+.+-+...|++||++++.-|..
T Consensus 117 d~v~aRAv~~l~~l~~~~~~~l~~~G~~l~~KG~~ 151 (184)
T PF02527_consen 117 DVVTARAVAPLDKLLELARPLLKPGGRLLAYKGPD 151 (184)
T ss_dssp EEEEEESSSSHHHHHHHHGGGEEEEEEEEEEESS-
T ss_pred cEEEeehhcCHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 9999998864 56688889999999999987753
No 180
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.62 E-value=3.4e-07 Score=84.02 Aligned_cols=104 Identities=21% Similarity=0.284 Sum_probs=84.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC-CCccEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF-APYDAIH 231 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~-~~fD~Ii 231 (298)
.+||-||-|.|..+..+.+.. +-.+++.+|+++..++.|++.+...... ...++++++.+|+.+..... .+||+|+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~--~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGG--ADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccc--cCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 599999999999999999984 5579999999999999999998764422 11489999999998765433 3799999
Q ss_pred ECCCCc----------hhHHHHHhccccCcEEEEEECC
Q 022372 232 VGAAAP----------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 232 ~~~~~~----------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
++..-+ +..+.+.+.|+++|+++.--++
T Consensus 155 ~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 155 VDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred EcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence 997543 4558899999999999987433
No 181
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.62 E-value=9.3e-08 Score=87.83 Aligned_cols=105 Identities=19% Similarity=0.162 Sum_probs=78.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC---CCCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~---~~~~ 226 (298)
..|.+|||+-|=+|.++.+.+.. |. .+|++||.|..+++.+++|+..+++ ...+++++.+|+.+.+. ..++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA-~~v~~VD~S~~al~~a~~N~~lNg~----~~~~~~~~~~Dvf~~l~~~~~~~~ 195 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GA-KEVVSVDSSKRALEWAKENAALNGL----DLDRHRFIQGDVFKFLKRLKKGGR 195 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TE-SEEEEEES-HHHHHHHHHHHHHTT-----CCTCEEEEES-HHHHHHHHHHTT-
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CC-CEEEEEeCCHHHHHHHHHHHHHcCC----CccceEEEecCHHHHHHHHhcCCC
Confidence 35789999999999999987764 33 5899999999999999999998874 34689999999876432 2368
Q ss_pred ccEEEECCCC------------chhHHHHHhccccCcEEEEEECCC
Q 022372 227 YDAIHVGAAA------------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 227 fD~Ii~~~~~------------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
||+|+++++. .++...+.++|+|||.|++....+
T Consensus 196 fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 196 FDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 9999999984 245577889999999998866543
No 182
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.61 E-value=3.8e-07 Score=81.59 Aligned_cols=90 Identities=24% Similarity=0.357 Sum_probs=74.3
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..+..+|+|||.|+|.++..+++.. |+.+++..|. |+.++.+++ . ++++++.+|..+.++. +|
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~---~---------~rv~~~~gd~f~~~P~---~D 160 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE---A---------DRVEFVPGDFFDPLPV---AD 160 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH---T---------TTEEEEES-TTTCCSS---ES
T ss_pred ccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc---c---------cccccccccHHhhhcc---cc
Confidence 5666799999999999999999995 7789999997 888888877 1 7999999999855443 99
Q ss_pred EEEECCCCch--------hHHHHHhccccC--cEEEE
Q 022372 229 AIHVGAAAPE--------IPQALIDQLKPG--GRMVI 255 (298)
Q Consensus 229 ~Ii~~~~~~~--------l~~~l~~~LkpG--G~Lvi 255 (298)
+++....++. +.+++.+.|+|| |+|++
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEE
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEE
Confidence 9999998864 457889999999 99998
No 183
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.60 E-value=2.8e-07 Score=84.62 Aligned_cols=111 Identities=18% Similarity=0.126 Sum_probs=81.7
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC-----CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-----GWPE 223 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~-----~~~~ 223 (298)
.++++.++|+|||-|.-..-.-+. |- +.++|+|+.+..++.|+++.+.......-..-.+.|+.+|... ..+.
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kA-gI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~ 192 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKA-GI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEF 192 (389)
T ss_pred hccccccceeccCCcccHhHhhhh-cc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccC
Confidence 688899999999998776666554 22 6899999999999999998875332100001357899999874 2222
Q ss_pred CCC-ccEEEECCCCc----------hhHHHHHhccccCcEEEEEECCCc
Q 022372 224 FAP-YDAIHVGAAAP----------EIPQALIDQLKPGGRMVIPVGNIF 261 (298)
Q Consensus 224 ~~~-fD~Ii~~~~~~----------~l~~~l~~~LkpGG~Lvi~v~~~~ 261 (298)
..+ ||+|-|..+++ -...++.+.|||||+++.++++..
T Consensus 193 ~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd 241 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSD 241 (389)
T ss_pred CCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecCcHH
Confidence 234 99998877763 244788899999999999999854
No 184
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=5.4e-07 Score=81.41 Aligned_cols=91 Identities=19% Similarity=0.135 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
.+.+..++++... +.+++.|||||+|.|.+|..|++.. .+|+++|+++.+++..++.... .+|++++
T Consensus 15 d~~v~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~~--------~~n~~vi 81 (259)
T COG0030 15 DKNVIDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFAP--------YDNLTVI 81 (259)
T ss_pred CHHHHHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhccc--------ccceEEE
Confidence 3456778888886 7789999999999999999999985 5899999999999999887652 2799999
Q ss_pred EcCCCCCCCCCC-CccEEEECCCCc
Q 022372 214 VGDGRKGWPEFA-PYDAIHVGAAAP 237 (298)
Q Consensus 214 ~gD~~~~~~~~~-~fD~Ii~~~~~~ 237 (298)
++|+.....+.- .++.|++|-+..
T Consensus 82 ~~DaLk~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 82 NGDALKFDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred eCchhcCcchhhcCCCEEEEcCCCc
Confidence 999998655421 689999998863
No 185
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.58 E-value=1.2e-07 Score=87.49 Aligned_cols=92 Identities=18% Similarity=0.298 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
.|-+...+++.|. +.++..++|.+||.|..+..+++.+++.++|+|+|.++++++.|++++.. .++++++
T Consensus 4 ~pVll~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--------~~ri~~i 73 (296)
T PRK00050 4 IPVLLDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--------FGRFTLV 73 (296)
T ss_pred ccccHHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--------CCcEEEE
Confidence 3567788889887 78889999999999999999999976678999999999999999988754 1689999
Q ss_pred EcCCCCCC---CC-CCCccEEEECCC
Q 022372 214 VGDGRKGW---PE-FAPYDAIHVGAA 235 (298)
Q Consensus 214 ~gD~~~~~---~~-~~~fD~Ii~~~~ 235 (298)
+++..+.. .. ..++|.|+.+.+
T Consensus 74 ~~~f~~l~~~l~~~~~~vDgIl~DLG 99 (296)
T PRK00050 74 HGNFSNLKEVLAEGLGKVDGILLDLG 99 (296)
T ss_pred eCCHHHHHHHHHcCCCccCEEEECCC
Confidence 99987532 11 127999988876
No 186
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.57 E-value=2e-07 Score=84.07 Aligned_cols=107 Identities=28% Similarity=0.329 Sum_probs=81.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CC-Cc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FA-PY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~-~f 227 (298)
+...+||-+|-|.|..+..+.+. .+-.+++.+|+++..++.|++.+...... +..++++++.+|+...... .+ +|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~-~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~--~~d~r~~i~~~Dg~~~l~~~~~~~y 151 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKH-PPVESITVVEIDPEVVELARKYFPEFSEG--LDDPRVRIIIGDGRKFLKETQEEKY 151 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTS-TT-SEEEEEES-HHHHHHHHHHTHHHHTT--GGSTTEEEEESTHHHHHHTSSST-E
T ss_pred CCcCceEEEcCCChhhhhhhhhc-CCcceEEEEecChHHHHHHHHhchhhccc--cCCCceEEEEhhhHHHHHhccCCcc
Confidence 45689999999999999998876 34469999999999999999988664321 3458999999998763322 23 79
Q ss_pred cEEEECCCC----------chhHHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAA----------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~----------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|+++..- .+..+.+.+.|+|||++++..+.
T Consensus 152 DvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~ 193 (246)
T PF01564_consen 152 DVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGS 193 (246)
T ss_dssp EEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccC
Confidence 999998764 24558899999999999997643
No 187
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.57 E-value=3.9e-07 Score=85.37 Aligned_cols=103 Identities=24% Similarity=0.275 Sum_probs=89.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..+|.+|+|.=+|-|+++..+|+.. . .+|+++|++|.+++..++|++.+++. +.+..++||..+..+..+.+|
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g-~-~~V~A~diNP~A~~~L~eNi~LN~v~-----~~v~~i~gD~rev~~~~~~aD 258 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKG-R-PKVYAIDINPDAVEYLKENIRLNKVE-----GRVEPILGDAREVAPELGVAD 258 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcC-C-ceEEEEecCHHHHHHHHHHHHhcCcc-----ceeeEEeccHHHhhhccccCC
Confidence 5679999999999999999999984 3 24999999999999999999998875 559999999998766657899
Q ss_pred EEEECCCC--chhHHHHHhccccCcEEEEEEC
Q 022372 229 AIHVGAAA--PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 229 ~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.|+.+.+. +++...+.+.+++||++.+...
T Consensus 259 rIim~~p~~a~~fl~~A~~~~k~~g~iHyy~~ 290 (341)
T COG2520 259 RIIMGLPKSAHEFLPLALELLKDGGIIHYYEF 290 (341)
T ss_pred EEEeCCCCcchhhHHHHHHHhhcCcEEEEEec
Confidence 99999876 5677888999999999988543
No 188
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.56 E-value=1.5e-07 Score=81.25 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=84.4
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
.+.-.+-..+...|....-+|.+|||+-||||.++.....+ |. .+|+.+|.++..+...++|++..+.. .+++
T Consensus 23 PT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-GA-~~v~fVE~~~~a~~~i~~N~~~l~~~-----~~~~ 95 (183)
T PF03602_consen 23 PTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-GA-KSVVFVEKNRKAIKIIKKNLEKLGLE-----DKIR 95 (183)
T ss_dssp SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T--SEEEEEES-HHHHHHHHHHHHHHT-G-----GGEE
T ss_pred CCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-CC-CeEEEEECCHHHHHHHHHHHHHhCCC-----ccee
Confidence 33344555566666633146899999999999999887776 33 59999999999999999999987654 4689
Q ss_pred EEEcCCCCCCC----CCCCccEEEECCCCch------hHHHHH--hccccCcEEEEEECCC
Q 022372 212 VHVGDGRKGWP----EFAPYDAIHVGAAAPE------IPQALI--DQLKPGGRMVIPVGNI 260 (298)
Q Consensus 212 ~~~gD~~~~~~----~~~~fD~Ii~~~~~~~------l~~~l~--~~LkpGG~Lvi~v~~~ 260 (298)
++..|....+. ...+||+|+.+++... +.+.+. .+|+++|.+++.....
T Consensus 96 v~~~d~~~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 96 VIKGDAFKFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp EEESSHHHHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred eeccCHHHHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 99999664331 2368999999999753 223444 6789999999977543
No 189
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.55 E-value=3.4e-07 Score=89.33 Aligned_cols=97 Identities=27% Similarity=0.278 Sum_probs=69.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 152 GMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~---g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+..|+|||||+|-++...++.. +...+|+++|.++.++...+++++.+++. ++|+++++|.++...+ .+.|
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~-----~~V~vi~~d~r~v~lp-ekvD 260 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG-----DKVTVIHGDMREVELP-EKVD 260 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT-----TTEEEEES-TTTSCHS-S-EE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC-----CeEEEEeCcccCCCCC-Ccee
Confidence 4679999999999986665542 23369999999999998887777777665 7899999999886554 5899
Q ss_pred EEEECCC----C----chhHHHHHhccccCcEEE
Q 022372 229 AIHVGAA----A----PEIPQALIDQLKPGGRMV 254 (298)
Q Consensus 229 ~Ii~~~~----~----~~l~~~l~~~LkpGG~Lv 254 (298)
+|++-.. . ++......+.|||||.++
T Consensus 261 IIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 261 IIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp EEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred EEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 9977542 1 234456668999998875
No 190
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.55 E-value=2.8e-07 Score=85.61 Aligned_cols=98 Identities=20% Similarity=0.174 Sum_probs=76.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+-.+..|||+|||+|-++..-|+. |. .+|+++|.+.-+ +.|++.+..+++. ..++++.|.+.+...+.++.|
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA-GA-~~V~aVe~S~ia-~~a~~iv~~N~~~-----~ii~vi~gkvEdi~LP~eKVD 129 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA-GA-RKVYAVEASSIA-DFARKIVKDNGLE-----DVITVIKGKVEDIELPVEKVD 129 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh-Cc-ceEEEEechHHH-HHHHHHHHhcCcc-----ceEEEeecceEEEecCcccee
Confidence 556889999999999999999998 44 699999977655 9999999888775 568999998887433357899
Q ss_pred EEEECCCC-----chhHHHH----HhccccCcEEE
Q 022372 229 AIHVGAAA-----PEIPQAL----IDQLKPGGRMV 254 (298)
Q Consensus 229 ~Ii~~~~~-----~~l~~~l----~~~LkpGG~Lv 254 (298)
+|++--.- +.+.+.+ =+.|+|||.++
T Consensus 130 iIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 130 IIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred EEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 99887543 2222222 26899999885
No 191
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.55 E-value=1.3e-07 Score=83.65 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=67.2
Q ss_pred CCCC-EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 150 KPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 150 ~~g~-~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
.++. .++|+|||+|..+..++... .+|+|+|++++|++.|++........ ........+........++.|
T Consensus 31 ~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k~~~~~y~~-----t~~~ms~~~~v~L~g~e~SVD 102 (261)
T KOG3010|consen 31 TEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKKHPPVTYCH-----TPSTMSSDEMVDLLGGEESVD 102 (261)
T ss_pred CCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhcCCCccccc-----CCccccccccccccCCCccee
Confidence 3444 78999999998888888886 68999999999999998754221110 112222222222222347999
Q ss_pred EEEECCCCc-----hhHHHHHhccccCc-EEEE
Q 022372 229 AIHVGAAAP-----EIPQALIDQLKPGG-RMVI 255 (298)
Q Consensus 229 ~Ii~~~~~~-----~l~~~l~~~LkpGG-~Lvi 255 (298)
+|++..+++ ...+.+.++||+.| .+.+
T Consensus 103 lI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iav 135 (261)
T KOG3010|consen 103 LITAAQAVHWFDLERFYKEAYRVLRKDGGLIAV 135 (261)
T ss_pred eehhhhhHHhhchHHHHHHHHHHcCCCCCEEEE
Confidence 999998875 45588999998766 5555
No 192
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.54 E-value=4.8e-07 Score=80.66 Aligned_cols=98 Identities=21% Similarity=0.272 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHH-HHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS-SIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~-A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
.++.+|||+|||+|+++..+++. |. .+|+++|+++.++.. .+++.+- ..++..|++. -+..+.+++...+|
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~-ga-~~v~avD~~~~~l~~~l~~~~~v----~~~~~~ni~~--~~~~~~~~d~~~~D 145 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK-GA-KEVYGVDVGYNQLAEKLRQDERV----KVLERTNIRY--VTPADIFPDFATFD 145 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc-CC-CEEEEEeCCHHHHHHHHhcCCCe----eEeecCCccc--CCHhHcCCCceeee
Confidence 36789999999999999999997 43 689999999987765 2222110 0012233331 11112222334678
Q ss_pred EEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 229 AIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 229 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+.+..... +...+.+.|+| |.+++.+-
T Consensus 146 vsfiS~~~--~l~~i~~~l~~-~~~~~L~K 172 (228)
T TIGR00478 146 VSFISLIS--ILPELDLLLNP-NDLTLLFK 172 (228)
T ss_pred EEEeehHh--HHHHHHHHhCc-CeEEEEcC
Confidence 77665554 78899999999 88888663
No 193
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.54 E-value=1e-06 Score=77.49 Aligned_cols=103 Identities=25% Similarity=0.384 Sum_probs=76.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC---CC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EF 224 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~---~~ 224 (298)
.+++|.+||-+|+.+|....+++..+++++.|+++|+++...+..-.-.++. +|+-.+.+|+..... --
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--------~NIiPIl~DAr~P~~Y~~lv 141 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--------PNIIPILEDARHPEKYRMLV 141 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--------TTEEEEES-TTSGGGGTTTS
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--------CceeeeeccCCChHHhhccc
Confidence 5789999999999999999999999998999999999995544433222221 799999999986321 12
Q ss_pred CCccEEEECCCCch----hHHHHHhccccCcEEEEEEC
Q 022372 225 APYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+..|+|+.+-+.++ +..++...||+||.+++.+-
T Consensus 142 ~~VDvI~~DVaQp~Qa~I~~~Na~~fLk~gG~~~i~iK 179 (229)
T PF01269_consen 142 EMVDVIFQDVAQPDQARIAALNARHFLKPGGHLIISIK 179 (229)
T ss_dssp --EEEEEEE-SSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccEEEecCCChHHHHHHHHHHHhhccCCcEEEEEEe
Confidence 57999999988754 34677789999999999773
No 194
>PRK00536 speE spermidine synthase; Provisional
Probab=98.54 E-value=6.9e-07 Score=81.16 Aligned_cols=116 Identities=12% Similarity=-0.030 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcc-CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 137 MHATCLQLLEEN-LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 137 ~~~~~l~~L~~~-l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
++..++-...-. .+...+||-+|.|.|.....+.+. + .+|+-+|++++.++.+++.+....- .+..++++++..
T Consensus 57 iYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~~ 131 (262)
T PRK00536 57 IESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQ 131 (262)
T ss_pred hHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEeeh
Confidence 344444443311 234489999999999999999987 2 4999999999999999997765332 366688988862
Q ss_pred CCCCCCCCCCCccEEEECCCC-chhHHHHHhccccCcEEEEEECCC
Q 022372 216 DGRKGWPEFAPYDAIHVGAAA-PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 216 D~~~~~~~~~~fD~Ii~~~~~-~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
..+ ...++||+|+++... ++..+.+.+.|+|||.++...+..
T Consensus 132 -~~~--~~~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 132 -LLD--LDIKKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred -hhh--ccCCcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCCCc
Confidence 111 112689999999554 466789999999999999955443
No 195
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.52 E-value=5.1e-07 Score=81.06 Aligned_cols=92 Identities=21% Similarity=0.255 Sum_probs=69.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
...++||||+|.|..|..++..+ .+|++.|.|+.|..+.++ .+ .+++..+-.. ....+||+|
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~----kg---------~~vl~~~~w~--~~~~~fDvI 155 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSK----KG---------FTVLDIDDWQ--QTDFKFDVI 155 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHh----CC---------CeEEehhhhh--ccCCceEEE
Confidence 34689999999999999999998 589999999999655443 22 2333333211 123589999
Q ss_pred EECCCCc------hhHHHHHhccccCcEEEEEECCC
Q 022372 231 HVGAAAP------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 231 i~~~~~~------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.|-..+. .+.+++++.|+|+|++++.+--+
T Consensus 156 scLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP 191 (265)
T PF05219_consen 156 SCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLP 191 (265)
T ss_pred eehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 9988874 46689999999999999976443
No 196
>PRK04148 hypothetical protein; Provisional
Probab=98.50 E-value=1.3e-06 Score=71.38 Aligned_cols=102 Identities=13% Similarity=0.106 Sum_probs=74.3
Q ss_pred HHHHHHHccCCCCCEEEEEcCCCcH-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGTGY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~GsG~-~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
.+.+.+. ...+.+|||||||+|. .+..|++. | ..|+++|+++..++.++++ .++++.+|..
T Consensus 7 ~l~~~~~--~~~~~kileIG~GfG~~vA~~L~~~-G--~~ViaIDi~~~aV~~a~~~-------------~~~~v~dDlf 68 (134)
T PRK04148 7 FIAENYE--KGKNKKIVELGIGFYFKVAKKLKES-G--FDVIVIDINEKAVEKAKKL-------------GLNAFVDDLF 68 (134)
T ss_pred HHHHhcc--cccCCEEEEEEecCCHHHHHHHHHC-C--CEEEEEECCHHHHHHHHHh-------------CCeEEECcCC
Confidence 3444443 3356899999999997 77888876 3 6999999999998888654 3578899988
Q ss_pred CCCCC-CCCccEEEECCCCchhHHHHHhccc-cCcEEEE-EECC
Q 022372 219 KGWPE-FAPYDAIHVGAAAPEIPQALIDQLK-PGGRMVI-PVGN 259 (298)
Q Consensus 219 ~~~~~-~~~fD~Ii~~~~~~~l~~~l~~~Lk-pGG~Lvi-~v~~ 259 (298)
+...+ -..+|+|++.-+.+++...+.++-| -|.-+++ |+++
T Consensus 69 ~p~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 69 NPNLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 75433 2579999999999988877776554 3444444 5544
No 197
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.49 E-value=7.7e-07 Score=82.64 Aligned_cols=125 Identities=21% Similarity=0.222 Sum_probs=83.0
Q ss_pred CCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHc------CCCcEEEEEeCCHHHHHHHHHHHHHhccC
Q 022372 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMV------GPQGRAVGVEHIPELVVSSIQNIEKSAAA 202 (298)
Q Consensus 129 ~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~------g~~~~V~giD~s~~~l~~A~~~~~~~~~~ 202 (298)
|+..+..++...|.+.+. ..++.+|+|-+||+|.+...+.+.+ ....+++|+|+++.++..|+-++.-.+.
T Consensus 26 G~~~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~- 102 (311)
T PF02384_consen 26 GQFYTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI- 102 (311)
T ss_dssp GGC---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH-
T ss_pred ceeehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc-
Confidence 344444556666777775 7778899999999999988887743 2347899999999999999988765443
Q ss_pred CccCCCCEEEEEcCCCCCCCC--CCCccEEEECCCCch---------------------------hHHHHHhccccCcEE
Q 022372 203 PLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAPE---------------------------IPQALIDQLKPGGRM 253 (298)
Q Consensus 203 ~~l~~~~v~~~~gD~~~~~~~--~~~fD~Ii~~~~~~~---------------------------l~~~l~~~LkpGG~L 253 (298)
...+..+..+|....... ...||+|+++++.-. ....+.+.||+||++
T Consensus 103 ---~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 103 ---DNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRA 179 (311)
T ss_dssp ---HCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEE
T ss_pred ---ccccccccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccce
Confidence 223456888887754332 368999999987521 225677899999998
Q ss_pred EEEECC
Q 022372 254 VIPVGN 259 (298)
Q Consensus 254 vi~v~~ 259 (298)
++-+++
T Consensus 180 ~~Ilp~ 185 (311)
T PF02384_consen 180 AIILPN 185 (311)
T ss_dssp EEEEEH
T ss_pred eEEecc
Confidence 886654
No 198
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.48 E-value=3.3e-07 Score=77.22 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=58.8
Q ss_pred EEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCch------hHHHHHhccccCcEE
Q 022372 180 VGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAPE------IPQALIDQLKPGGRM 253 (298)
Q Consensus 180 ~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~------l~~~l~~~LkpGG~L 253 (298)
+|+|+|++|++.|+++...... -...+++++++|+.+...+.++||+|++..++++ ..+++++.|||||.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~---~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l 77 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKAR---SCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRV 77 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccc---cCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEE
Confidence 4899999999999877653221 0125799999999887666679999999988764 347899999999999
Q ss_pred EEEE
Q 022372 254 VIPV 257 (298)
Q Consensus 254 vi~v 257 (298)
++..
T Consensus 78 ~i~d 81 (160)
T PLN02232 78 SILD 81 (160)
T ss_pred EEEE
Confidence 8753
No 199
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.47 E-value=3e-07 Score=81.38 Aligned_cols=94 Identities=20% Similarity=0.250 Sum_probs=70.1
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCC--cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC----CCCCCCCCc
Q 022372 154 HALDIGSGTGYLTACFALMVGPQ--GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR----KGWPEFAPY 227 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~--~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~----~~~~~~~~f 227 (298)
++||||||.|.....+.+. .++ -+|++.|.++.+++..+++..... .++....-|.. ...++.+++
T Consensus 74 ~ilEvGCGvGNtvfPll~~-~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-------~~~~afv~Dlt~~~~~~~~~~~sv 145 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKT-SPNNRLKVYACDFSPRAIELVKKSSGYDE-------SRVEAFVWDLTSPSLKEPPEEGSV 145 (264)
T ss_pred hheeeccCCCcccchhhhc-CCCCCeEEEEcCCChHHHHHHHhccccch-------hhhcccceeccchhccCCCCcCcc
Confidence 7999999999999888887 354 689999999999999988754322 23333333333 334455789
Q ss_pred cEEEECCCCch--------hHHHHHhccccCcEEEE
Q 022372 228 DAIHVGAAAPE--------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~~~~--------l~~~l~~~LkpGG~Lvi 255 (298)
|.|++..++.. ..+++.++|||||.|++
T Consensus 146 D~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llf 181 (264)
T KOG2361|consen 146 DIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLF 181 (264)
T ss_pred ceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEE
Confidence 99977766533 44789999999999998
No 200
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.44 E-value=9.9e-07 Score=81.46 Aligned_cols=131 Identities=22% Similarity=0.226 Sum_probs=91.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
.+..|||+|||+|.++...++. |. .+|+++|.+ +|.+.|++-++.+.+. +++.++.|...+...+ ++.|+|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA-~~vYAvEAS-~MAqyA~~Lv~~N~~~-----~rItVI~GKiEdieLP-Ek~Dvi 247 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GA-KKVYAVEAS-EMAQYARKLVASNNLA-----DRITVIPGKIEDIELP-EKVDVI 247 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-Cc-ceEEEEehh-HHHHHHHHHHhcCCcc-----ceEEEccCccccccCc-hhccEE
Confidence 4678999999999999998887 44 699999964 7889999888776554 7899999998875544 689999
Q ss_pred EECCCC-----chhHH---HHHhccccCcEEEEEECCCc-------ee-EEEEEEcCCCCeEEEEeeeEEEeecccch
Q 022372 231 HVGAAA-----PEIPQ---ALIDQLKPGGRMVIPVGNIF-------QD-LKVVDKNQDGSLSIWSETSVRYVPLTSRD 292 (298)
Q Consensus 231 i~~~~~-----~~l~~---~l~~~LkpGG~Lvi~v~~~~-------q~-~~~~~~~~~g~~~~~~l~~v~fvPl~~~~ 292 (298)
++-+.- +.+.+ ...+.|||.|.++=++++-. +. ...+.| ..-|-.....+|...||..+.
T Consensus 248 ISEPMG~mL~NERMLEsYl~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~nk--AnFWyQq~fyGVdLt~L~g~a 323 (517)
T KOG1500|consen 248 ISEPMGYMLVNERMLESYLHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFNK--ANFWYQQNFYGVDLTPLYGSA 323 (517)
T ss_pred EeccchhhhhhHHHHHHHHHHHhhcCCCCcccCcccceeecccchHHHHHHHHhh--hhhhhhhccccccchhhhhhh
Confidence 988753 23332 34589999999987666421 00 111111 233444556677777765543
No 201
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.42 E-value=2.8e-07 Score=77.85 Aligned_cols=75 Identities=21% Similarity=0.226 Sum_probs=56.3
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC--C-CccEE
Q 022372 154 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--A-PYDAI 230 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~--~-~fD~I 230 (298)
.|+|+.||.|..+..+|+.+ .+|+++|+++..++.|+.|++-.+.. ++++++++|..+..... . .||+|
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~-----~~I~~i~gD~~~~~~~~~~~~~~D~v 73 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVA-----DNIDFICGDFFELLKRLKSNKIFDVV 73 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-G-----GGEEEEES-HHHHGGGB------SEE
T ss_pred EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEeCCHHHHHhhccccccccEE
Confidence 68999999999999999986 68999999999999999999988764 79999999988643221 1 28999
Q ss_pred EECCCC
Q 022372 231 HVGAAA 236 (298)
Q Consensus 231 i~~~~~ 236 (298)
+.+++.
T Consensus 74 FlSPPW 79 (163)
T PF09445_consen 74 FLSPPW 79 (163)
T ss_dssp EE---B
T ss_pred EECCCC
Confidence 999863
No 202
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.42 E-value=5.3e-07 Score=79.09 Aligned_cols=137 Identities=20% Similarity=0.208 Sum_probs=84.2
Q ss_pred CccChHHHHHH--HHHHHHccC----CCCCEEEEEcCCCcHHHHHH-HHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC
Q 022372 130 ATISAPHMHAT--CLQLLEENL----KPGMHALDIGSGTGYLTACF-ALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 202 (298)
Q Consensus 130 ~~is~p~~~~~--~l~~L~~~l----~~g~~VLDiG~GsG~~t~~L-a~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~ 202 (298)
.+++.+.+... ++..+.... ....++||.|+|-|+.|..+ .+.+ .+|..+|..+..++.|++.+....
T Consensus 28 ~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f---~~VDlVEp~~~Fl~~a~~~l~~~~-- 102 (218)
T PF05891_consen 28 GHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVF---DEVDLVEPVEKFLEQAKEYLGKDN-- 102 (218)
T ss_dssp GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC----SEEEEEES-HHHHHHHHHHTCCGG--
T ss_pred CCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhc---CEeEEeccCHHHHHHHHHHhcccC--
Confidence 36777776654 344332111 23468999999999999755 4444 699999999999999998764411
Q ss_pred CccCCCCE-EEEEcCCCCCCCCCCCccEEEECCCCchh--------HHHHHhccccCcEEEEEECCCceeEEEEEEcCCC
Q 022372 203 PLLKEGSL-SVHVGDGRKGWPEFAPYDAIHVGAAAPEI--------PQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDG 273 (298)
Q Consensus 203 ~~l~~~~v-~~~~gD~~~~~~~~~~fD~Ii~~~~~~~l--------~~~l~~~LkpGG~Lvi~v~~~~q~~~~~~~~~~g 273 (298)
.++ ++.+....+..|+..+||+|.+.-.+-++ ++.+.+.|+|+|.+++--+........+++. |+
T Consensus 103 -----~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~-Ds 176 (218)
T PF05891_consen 103 -----PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEE-DS 176 (218)
T ss_dssp -----CCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETT-TT
T ss_pred -----CCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCc-cC
Confidence 343 44444444444555799999988877544 4678889999999999555444444455543 55
Q ss_pred CeEE
Q 022372 274 SLSI 277 (298)
Q Consensus 274 ~~~~ 277 (298)
++++
T Consensus 177 SvTR 180 (218)
T PF05891_consen 177 SVTR 180 (218)
T ss_dssp EEEE
T ss_pred eeec
Confidence 5655
No 203
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=98.38 E-value=2.7e-06 Score=80.67 Aligned_cols=103 Identities=22% Similarity=0.255 Sum_probs=86.2
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---PEFA 225 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~---~~~~ 225 (298)
+++|.+|||..+..|.-|.++|.++...+.+++.|.+...+...+.|+.+.+. .+..+...|..+.. .. +
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv------~ntiv~n~D~~ef~~~~~~-~ 311 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV------TNTIVSNYDGREFPEKEFP-G 311 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC------CceEEEccCcccccccccC-c
Confidence 78999999999999999999999998889999999999999999999988654 68888888887532 12 3
Q ss_pred CccEEEECCCCc----------------------------hhHHHHHhccccCcEEEEEEC
Q 022372 226 PYDAIHVGAAAP----------------------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 226 ~fD~Ii~~~~~~----------------------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+||.|+.+++.. ++...+.+.+++||+||.+.-
T Consensus 312 ~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 312 SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 799999998752 223456789999999999664
No 204
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.38 E-value=9.3e-06 Score=69.87 Aligned_cols=121 Identities=19% Similarity=0.208 Sum_probs=87.9
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
.+.-.+-..+-..+...--.|.++||+=+|||.++...+.+. . .+++.+|.+...+...++|++..+.. .+.+
T Consensus 24 PT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRG-A-~~~~~vE~~~~a~~~l~~N~~~l~~~-----~~~~ 96 (187)
T COG0742 24 PTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRG-A-ARVVFVEKDRKAVKILKENLKALGLE-----GEAR 96 (187)
T ss_pred CCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCC-C-ceEEEEecCHHHHHHHHHHHHHhCCc-----cceE
Confidence 333334444555554211457899999999999998888873 3 69999999999999999999886644 6888
Q ss_pred EEEcCCCCCC---CCCCCccEEEECCCCch-hH----HH----HHhccccCcEEEEEECC
Q 022372 212 VHVGDGRKGW---PEFAPYDAIHVGAAAPE-IP----QA----LIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 212 ~~~gD~~~~~---~~~~~fD~Ii~~~~~~~-l~----~~----l~~~LkpGG~Lvi~v~~ 259 (298)
++..|..... ...++||+|+.+++..+ +. .. -..+|+|+|.+++....
T Consensus 97 ~~~~da~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~ 156 (187)
T COG0742 97 VLRNDALRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDK 156 (187)
T ss_pred EEeecHHHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEEEeCC
Confidence 8888887431 22235999999999862 22 11 23579999999996653
No 205
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.38 E-value=2.7e-06 Score=84.40 Aligned_cols=102 Identities=22% Similarity=0.166 Sum_probs=82.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC--CCCCCCCcc
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GWPEFAPYD 228 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~--~~~~~~~fD 228 (298)
.+..+||||||.|.++..+|+. .|+..++|+|+....+..+.++..+.++ .|+.++.+|... ...+.+++|
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~-~p~~~~iGiE~~~~~~~~~~~~~~~~~l------~N~~~~~~~~~~~~~~~~~~sv~ 419 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKM-NPDALFIGVEVYLNGVANVLKLAGEQNI------TNFLLFPNNLDLILNDLPNNSLD 419 (506)
T ss_pred CCceEEEECCCchHHHHHHHHh-CCCCCEEEEEeeHHHHHHHHHHHHHcCC------CeEEEEcCCHHHHHHhcCccccc
Confidence 4568999999999999999999 5778999999999999999888776544 689888887642 123347899
Q ss_pred EEEECCCCc--------------hhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAP--------------EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.|+.+.+-+ ...+.+.+.|||||.+.+-...
T Consensus 420 ~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 420 GIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred EEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 999998742 3457889999999999986654
No 206
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.35 E-value=3.6e-06 Score=74.19 Aligned_cols=99 Identities=21% Similarity=0.250 Sum_probs=81.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC-ccEE
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP-YDAI 230 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~-fD~I 230 (298)
+.+++|||+|.|.-+..+|-. .|+.+|+-+|.....+++.+.-..+.+ .+|++++++.+.+.... .. ||+|
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~p~~~vtLles~~Kk~~FL~~~~~eL~------L~nv~i~~~RaE~~~~~-~~~~D~v 139 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-FPDLKVTLLESLGKKIAFLREVKKELG------LENVEIVHGRAEEFGQE-KKQYDVV 139 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-ccCCcEEEEccCchHHHHHHHHHHHhC------CCCeEEehhhHhhcccc-cccCcEE
Confidence 589999999999999999965 477789999999999999988887754 47999999998776543 23 9999
Q ss_pred EECCCC--chhHHHHHhccccCcEEEEEEC
Q 022372 231 HVGAAA--PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 231 i~~~~~--~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.+-+.. ..+.+-+..++|+||.++...+
T Consensus 140 tsRAva~L~~l~e~~~pllk~~g~~~~~k~ 169 (215)
T COG0357 140 TSRAVASLNVLLELCLPLLKVGGGFLAYKG 169 (215)
T ss_pred EeehccchHHHHHHHHHhcccCCcchhhhH
Confidence 998875 4667888899999999875443
No 207
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.32 E-value=1e-05 Score=83.35 Aligned_cols=124 Identities=17% Similarity=0.109 Sum_probs=88.8
Q ss_pred ccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcC---C--------------------------------
Q 022372 131 TISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG---P-------------------------------- 175 (298)
Q Consensus 131 ~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g---~-------------------------------- 175 (298)
....+.+.+.++.... ..+++..++|.+||+|.+.+..|.+.. |
T Consensus 171 Apl~etlAaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~ 249 (702)
T PRK11783 171 APLKENLAAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERAR 249 (702)
T ss_pred CCCcHHHHHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 3345666677776543 235678999999999999877765411 1
Q ss_pred ------CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCccEEEECCCCc----------
Q 022372 176 ------QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAP---------- 237 (298)
Q Consensus 176 ------~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~--~~~fD~Ii~~~~~~---------- 237 (298)
..+++|+|+++.+++.|++|+...++. +.+++.++|..+.... .++||+|++|++.-
T Consensus 250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~-----~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~ 324 (702)
T PRK11783 250 AGLAELPSKFYGSDIDPRVIQAARKNARRAGVA-----ELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALI 324 (702)
T ss_pred hcccccCceEEEEECCHHHHHHHHHHHHHcCCC-----cceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHH
Confidence 136999999999999999999998764 5789999998775432 24699999999861
Q ss_pred hhHHHHHh---ccccCcEEEEEECCC
Q 022372 238 EIPQALID---QLKPGGRMVIPVGNI 260 (298)
Q Consensus 238 ~l~~~l~~---~LkpGG~Lvi~v~~~ 260 (298)
++.+.+.+ ...+|+++++-.++.
T Consensus 325 ~lY~~lg~~lk~~~~g~~~~llt~~~ 350 (702)
T PRK11783 325 ALYSQLGRRLKQQFGGWNAALFSSSP 350 (702)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence 12223333 334899998877653
No 208
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.30 E-value=9.6e-06 Score=80.88 Aligned_cols=103 Identities=12% Similarity=0.063 Sum_probs=71.7
Q ss_pred CCCccChHHHHHHHHHHHHccCC-----CCCEEEEEcCCCcHHHHHHHHHcCC-------CcEEEEEeCCHHHHHHHHHH
Q 022372 128 YNATISAPHMHATCLQLLEENLK-----PGMHALDIGSGTGYLTACFALMVGP-------QGRAVGVEHIPELVVSSIQN 195 (298)
Q Consensus 128 ~~~~is~p~~~~~~l~~L~~~l~-----~g~~VLDiG~GsG~~t~~La~~~g~-------~~~V~giD~s~~~l~~A~~~ 195 (298)
.|+..+.+.+...|++.+..... .+.+|||.|||+|.+...+++.+.. ...++|+|+++.++..++.+
T Consensus 3 ~GqfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~ 82 (524)
T TIGR02987 3 YGTFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKL 82 (524)
T ss_pred CcccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHH
Confidence 45666777788888877642222 3468999999999999888876521 24789999999999999998
Q ss_pred HHHhccCCccCCCCEEEEEcCCCCC----C-CCCCCccEEEECCCC
Q 022372 196 IEKSAAAPLLKEGSLSVHVGDGRKG----W-PEFAPYDAIHVGAAA 236 (298)
Q Consensus 196 ~~~~~~~~~l~~~~v~~~~gD~~~~----~-~~~~~fD~Ii~~~~~ 236 (298)
+...+. ..+.+..+|.... . ...+.||+|+.|++.
T Consensus 83 l~~~~~------~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy 122 (524)
T TIGR02987 83 LGEFAL------LEINVINFNSLSYVLLNIESYLDLFDIVITNPPY 122 (524)
T ss_pred HhhcCC------CCceeeecccccccccccccccCcccEEEeCCCc
Confidence 876431 1234454543321 1 112579999999885
No 209
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.30 E-value=3.4e-06 Score=80.50 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=81.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAIH 231 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD~Ii 231 (298)
.+|||+.||+|..+..++...+.-.+|+++|+++++++.+++|++.++. .++++.++|+...... ...||+|+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~------~~~~v~~~Da~~~l~~~~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV------ENIEVPNEDAANVLRYRNRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC------CcEEEEchhHHHHHHHhCCCCCEEE
Confidence 5899999999999999998742225899999999999999999988654 4788999988754332 25799999
Q ss_pred ECCCCc--hhHHHHHhccccCcEEEEEEC
Q 022372 232 VGAAAP--EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 232 ~~~~~~--~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.++.-. .+.+.+.+.+++||.|.++..
T Consensus 120 lDPfGs~~~fld~al~~~~~~glL~vTaT 148 (374)
T TIGR00308 120 IDPFGTPAPFVDSAIQASAERGLLLVTAT 148 (374)
T ss_pred eCCCCCcHHHHHHHHHhcccCCEEEEEec
Confidence 998432 566888899999999999743
No 210
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.30 E-value=2.3e-06 Score=74.68 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=64.8
Q ss_pred CCCEEEEEcCCCcH----HHHHHHHHcC---C-CcEEEEEeCCHHHHHHHHHHH--------------HHhccC---Ccc
Q 022372 151 PGMHALDIGSGTGY----LTACFALMVG---P-QGRAVGVEHIPELVVSSIQNI--------------EKSAAA---PLL 205 (298)
Q Consensus 151 ~g~~VLDiG~GsG~----~t~~La~~~g---~-~~~V~giD~s~~~l~~A~~~~--------------~~~~~~---~~l 205 (298)
+.-+|+.+||++|. ++..+.+..+ + .-+++|.|+++.+++.|++-. +++-.. ...
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34689999999995 3344444221 1 358999999999999997632 111000 000
Q ss_pred C-----CCCEEEEEcCCCCCCCCCCCccEEEECCCC--------chhHHHHHhccccCcEEEEEE
Q 022372 206 K-----EGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 206 ~-----~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~--------~~l~~~l~~~LkpGG~Lvi~v 257 (298)
. ..+|+|...|..+..+..+.||+|+|-.++ ..+.+.+++.|+|||.|++--
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 0 157999999988844555899999999987 346688899999999999843
No 211
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=2.9e-06 Score=82.38 Aligned_cols=148 Identities=18% Similarity=0.225 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
++.++..+-+.+. ++++..+||+.||||.++..+|+.+ .+|+|+|++++.++.|++|...++. .|.+|+
T Consensus 368 aevLys~i~e~~~--l~~~k~llDv~CGTG~iglala~~~---~~ViGvEi~~~aV~dA~~nA~~Ngi------sNa~Fi 436 (534)
T KOG2187|consen 368 AEVLYSTIGEWAG--LPADKTLLDVCCGTGTIGLALARGV---KRVIGVEISPDAVEDAEKNAQINGI------SNATFI 436 (534)
T ss_pred HHHHHHHHHHHhC--CCCCcEEEEEeecCCceehhhhccc---cceeeeecChhhcchhhhcchhcCc------cceeee
Confidence 3445555666665 8888999999999999999999987 6999999999999999999999877 699999
Q ss_pred EcCCCCCCCCC-----CCcc-EEEECCCCchhH----HHHHhccccCcEEEEEECCCce--e-EEE----EEEcCCCCeE
Q 022372 214 VGDGRKGWPEF-----APYD-AIHVGAAAPEIP----QALIDQLKPGGRMVIPVGNIFQ--D-LKV----VDKNQDGSLS 276 (298)
Q Consensus 214 ~gD~~~~~~~~-----~~fD-~Ii~~~~~~~l~----~~l~~~LkpGG~Lvi~v~~~~q--~-~~~----~~~~~~g~~~ 276 (298)
+|.+.+..+.. ++=+ +++++.+-..+. +.+.+.-.+.-.+++++....+ . ..+ ..+...|.|.
T Consensus 437 ~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc~~~~~~~~~g~fr 516 (534)
T KOG2187|consen 437 VGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPHTAARNVIDLCSSPKYRLKKGFFR 516 (534)
T ss_pred ecchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceEEEEcCHHHhhhhHHHhhcCccccccccccc
Confidence 99655533221 2335 556666543332 3333333366666666654321 1 111 1233355677
Q ss_pred EEEeeeEEEeecccch
Q 022372 277 IWSETSVRYVPLTSRD 292 (298)
Q Consensus 277 ~~~l~~v~fvPl~~~~ 292 (298)
.....+|..+|-|+.-
T Consensus 517 ~~~~~~VDlfP~T~h~ 532 (534)
T KOG2187|consen 517 LVKAVGVDLFPHTPHC 532 (534)
T ss_pred eeeeeecccCCCCCcC
Confidence 8888888888887653
No 212
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.29 E-value=4.2e-06 Score=77.10 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=73.1
Q ss_pred CCEEEEEcCCCcH----HHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHH--------------hc----------
Q 022372 152 GMHALDIGSGTGY----LTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEK--------------SA---------- 200 (298)
Q Consensus 152 g~~VLDiG~GsG~----~t~~La~~~g~---~~~V~giD~s~~~l~~A~~~~~~--------------~~---------- 200 (298)
.-+|+..||+||- ++..+.+..+. +.+|+|+|+++.+++.|++-.-. +-
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999994 33444453321 35899999999999999875210 00
Q ss_pred --cCCccCCCCEEEEEcCCCCC-CCCCCCccEEEECCCCc--------hhHHHHHhccccCcEEEEEEC
Q 022372 201 --AAPLLKEGSLSVHVGDGRKG-WPEFAPYDAIHVGAAAP--------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 201 --~~~~l~~~~v~~~~gD~~~~-~~~~~~fD~Ii~~~~~~--------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+.+.+ ...|+|...|..+. ++..+.||+|+|..++. .+.+.+.+.|+|||.|++--.
T Consensus 196 ~~v~~~l-r~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 196 VRVRQEL-ANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EEEChHH-HccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence 00001 15678888888773 33347899999987753 455788999999999987443
No 213
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.20 E-value=7.1e-06 Score=72.04 Aligned_cols=119 Identities=27% Similarity=0.376 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhcc---CCccCCCCE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA---APLLKEGSL 210 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~---~~~l~~~~v 210 (298)
.|.....+++.+. +++++.++|+|||.|......|...+ -.+.+|||+.+...+.|++....... .......++
T Consensus 27 ~~~~~~~il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~-~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v 103 (205)
T PF08123_consen 27 SPEFVSKILDELN--LTPDDVFYDLGSGVGNVVFQAALQTG-CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV 103 (205)
T ss_dssp HHHHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE
T ss_pred CHHHHHHHHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcC-CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3455677788776 88999999999999998888876653 25799999999999888765433211 011233678
Q ss_pred EEEEcCCCCCCCC---CCCccEEEECCCC--chhH---HHHHhccccCcEEEE
Q 022372 211 SVHVGDGRKGWPE---FAPYDAIHVGAAA--PEIP---QALIDQLKPGGRMVI 255 (298)
Q Consensus 211 ~~~~gD~~~~~~~---~~~fD~Ii~~~~~--~~l~---~~l~~~LkpGG~Lvi 255 (298)
++..+|..+.... -..-|+|+++... +.+. .+....||+|-++|-
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTCFDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TTT-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred eeeccCccccHhHhhhhcCCCEEEEeccccCHHHHHHHHHHHhcCCCCCEEEE
Confidence 8889987653210 0246999998765 2333 445567888877764
No 214
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.16 E-value=1.1e-05 Score=73.48 Aligned_cols=92 Identities=22% Similarity=0.172 Sum_probs=74.3
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
+..+.+...+++.+. +.++..|||+|+|.|.+|..|++.. .+++++|+++.+++..++++.. .++++
T Consensus 13 L~~~~~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~~--------~~~~~ 79 (262)
T PF00398_consen 13 LVDPNIADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFAS--------NPNVE 79 (262)
T ss_dssp EEHHHHHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCTT--------CSSEE
T ss_pred eCCHHHHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhhh--------cccce
Confidence 456778888999887 7789999999999999999999985 6999999999999999887642 27999
Q ss_pred EEEcCCCCCCCCC---CCccEEEECCCC
Q 022372 212 VHVGDGRKGWPEF---APYDAIHVGAAA 236 (298)
Q Consensus 212 ~~~gD~~~~~~~~---~~fD~Ii~~~~~ 236 (298)
++.+|+.+..... .....|+.+.+.
T Consensus 80 vi~~D~l~~~~~~~~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 80 VINGDFLKWDLYDLLKNQPLLVVGNLPY 107 (262)
T ss_dssp EEES-TTTSCGGGHCSSSEEEEEEEETG
T ss_pred eeecchhccccHHhhcCCceEEEEEecc
Confidence 9999998754332 245677887776
No 215
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.16 E-value=2.4e-05 Score=71.35 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=74.8
Q ss_pred CCEEEEEcCCCcH----HHHHHHHHcCC----CcEEEEEeCCHHHHHHHHHHHHH-----hcc---------CCc----c
Q 022372 152 GMHALDIGSGTGY----LTACFALMVGP----QGRAVGVEHIPELVVSSIQNIEK-----SAA---------APL----L 205 (298)
Q Consensus 152 g~~VLDiG~GsG~----~t~~La~~~g~----~~~V~giD~s~~~l~~A~~~~~~-----~~~---------~~~----l 205 (298)
.-+|+-+||+||- ++..+.+.++. .-+++|.|++...++.|+.-.-. .++ ... .
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5689999999993 45555565532 46899999999999999753211 111 000 0
Q ss_pred C-----CCCEEEEEcCCCCCCCCCCCccEEEECCCC--------chhHHHHHhccccCcEEEE
Q 022372 206 K-----EGSLSVHVGDGRKGWPEFAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 206 ~-----~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~--------~~l~~~l~~~LkpGG~Lvi 255 (298)
. ...|.|...|.....+..+.||+|+|-.++ .++.+.++..|+|||.|++
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl 239 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL 239 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 0 146788888887766444789999999987 4577889999999999997
No 216
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.15 E-value=3.6e-07 Score=71.24 Aligned_cols=94 Identities=24% Similarity=0.378 Sum_probs=39.7
Q ss_pred EEEcCCCcHHHHHHHHHcCCCc--EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCccEEE
Q 022372 156 LDIGSGTGYLTACFALMVGPQG--RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIH 231 (298)
Q Consensus 156 LDiG~GsG~~t~~La~~~g~~~--~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~--~~~fD~Ii 231 (298)
||+|+..|+.+..+++.+.+.. +++++|..+. .+.+++.+++.+.. .+++++.++..+..+. .++||+|+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~-----~~~~~~~g~s~~~l~~~~~~~~dli~ 74 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLS-----DRVEFIQGDSPDFLPSLPDGPIDLIF 74 (106)
T ss_dssp --------------------------EEEESS-------------GGG------BTEEEEES-THHHHHHHHH--EEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCC-----CeEEEEEcCcHHHHHHcCCCCEEEEE
Confidence 6999999999999998875544 7999999996 33444444443332 5799999998653221 36899999
Q ss_pred ECCCC--c---hhHHHHHhccccCcEEEE
Q 022372 232 VGAAA--P---EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 232 ~~~~~--~---~l~~~l~~~LkpGG~Lvi 255 (298)
.++.- + .-.+.+.+.|+|||.+++
T Consensus 75 iDg~H~~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 75 IDGDHSYEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp EES---HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred ECCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 99973 2 234678889999999986
No 217
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.13 E-value=5.8e-05 Score=71.54 Aligned_cols=126 Identities=17% Similarity=0.164 Sum_probs=93.9
Q ss_pred cCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcC---C----------------------------
Q 022372 127 GYNATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG---P---------------------------- 175 (298)
Q Consensus 127 g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g---~---------------------------- 175 (298)
..+.......+.+.|+.+.. -+++..++|-=||+|.+.+..|.+.. |
T Consensus 169 ~~g~ApLketLAaAil~lag--w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~ 246 (381)
T COG0116 169 YDGPAPLKETLAAAILLLAG--WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEE 246 (381)
T ss_pred cCCCCCchHHHHHHHHHHcC--CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHH
Confidence 33444555666666666554 66778999999999999988887742 1
Q ss_pred Cc-------EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCC------c-----
Q 022372 176 QG-------RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAA------P----- 237 (298)
Q Consensus 176 ~~-------~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~------~----- 237 (298)
.. .++|.|+++.+++.|+.|....++. +.|.|.++|+.....+.+.+|+|++|++. +
T Consensus 247 ~a~~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~-----d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~ 321 (381)
T COG0116 247 RARRGKELPIIYGSDIDPRHIEGAKANARAAGVG-----DLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAK 321 (381)
T ss_pred HHhhcCccceEEEecCCHHHHHHHHHHHHhcCCC-----ceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHH
Confidence 11 3789999999999999999998886 78999999998765544789999999985 1
Q ss_pred ---hhHHHHHhccccCcEEEEEECC
Q 022372 238 ---EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 238 ---~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
++.+.+.+.++--++.+++...
T Consensus 322 LY~~fg~~lk~~~~~ws~~v~tt~e 346 (381)
T COG0116 322 LYREFGRTLKRLLAGWSRYVFTTSE 346 (381)
T ss_pred HHHHHHHHHHHHhcCCceEEEEccH
Confidence 1224555677777788875543
No 218
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=98.12 E-value=8.3e-06 Score=72.27 Aligned_cols=100 Identities=25% Similarity=0.362 Sum_probs=80.5
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHH----HHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE----LVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~----~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~ 223 (298)
+++||.+||-+|+++|+.....+..++|++.|+++|.+.. ++..|+++ .|+.-+..|+.....-
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR------------tNiiPIiEDArhP~KY 220 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR------------TNIIPIIEDARHPAKY 220 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc------------CCceeeeccCCCchhe
Confidence 6899999999999999999999999999999999999974 45555443 6888888898764321
Q ss_pred ---CCCccEEEECCCCchhH----HHHHhccccCcEEEEEECC
Q 022372 224 ---FAPYDAIHVGAAAPEIP----QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 224 ---~~~fD~Ii~~~~~~~l~----~~l~~~LkpGG~Lvi~v~~ 259 (298)
-+..|+||++-+.+... -+..-.||+||-+++++-.
T Consensus 221 RmlVgmVDvIFaDvaqpdq~RivaLNA~~FLk~gGhfvisika 263 (317)
T KOG1596|consen 221 RMLVGMVDVIFADVAQPDQARIVALNAQYFLKNGGHFVISIKA 263 (317)
T ss_pred eeeeeeEEEEeccCCCchhhhhhhhhhhhhhccCCeEEEEEec
Confidence 14679999998876433 4667789999999998854
No 219
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.04 E-value=6.7e-05 Score=61.80 Aligned_cols=105 Identities=27% Similarity=0.388 Sum_probs=66.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHc---CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMV---GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~---g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.+..+|+|+|||.||++..|+..+ .++.+|+++|.++..++.+.++.++.... + ..++.+..++...... ...
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~--~-~~~~~~~~~~~~~~~~-~~~ 99 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSD--L-EKRLSFIQGDIADESS-SDP 99 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcch--h-hccchhhccchhhhcc-cCC
Confidence 567899999999999999999943 24579999999999999999988775521 0 1455666655433222 245
Q ss_pred ccEEEECCCCchhHHHHH-hccccCcEEEEEEC
Q 022372 227 YDAIHVGAAAPEIPQALI-DQLKPGGRMVIPVG 258 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~-~~LkpGG~Lvi~v~ 258 (298)
.++++.--+.-.+...+. ..++++-..++.+|
T Consensus 100 ~~~~vgLHaCG~Ls~~~l~~~~~~~~~~l~~vp 132 (141)
T PF13679_consen 100 PDILVGLHACGDLSDRALRLFIRPNARFLVLVP 132 (141)
T ss_pred CeEEEEeecccchHHHHHHHHHHcCCCEEEEcC
Confidence 566644433333322222 22236555555444
No 220
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=3.6e-05 Score=67.19 Aligned_cols=95 Identities=27% Similarity=0.340 Sum_probs=73.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
.++++..|+|+|+..|..+..+++.+++++.|+++|+.|-. ..++|.++++|.....
T Consensus 42 i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------------~~~~V~~iq~d~~~~~~~~~l~ 104 (205)
T COG0293 42 LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------------PIPGVIFLQGDITDEDTLEKLL 104 (205)
T ss_pred eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------------cCCCceEEeeeccCccHHHHHH
Confidence 46789999999999999999999999888889999997631 1256999999988632
Q ss_pred --CCCCCccEEEECCCC--------ch---------hHHHHHhccccCcEEEEEECC
Q 022372 222 --PEFAPYDAIHVGAAA--------PE---------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~--------~~---------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
....++|+|+++.+. ++ .++-..+.|+|||.+++.+-.
T Consensus 105 ~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 105 EALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred HHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 222457999999874 22 124456799999999997743
No 221
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.03 E-value=2.1e-05 Score=69.10 Aligned_cols=95 Identities=25% Similarity=0.366 Sum_probs=65.5
Q ss_pred EEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECC
Q 022372 155 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGA 234 (298)
Q Consensus 155 VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~ 234 (298)
|.||||--||+...|.+. +...+++++|+++..++.|++++.+.++. ++++++.+|+.....+.+..|.|+..+
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~-----~~i~~rlgdGL~~l~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLE-----DRIEVRLGDGLEVLKPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-T-----TTEEEEE-SGGGG--GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCc-----ccEEEEECCcccccCCCCCCCEEEEec
Confidence 689999999999999998 45568999999999999999999998875 789999999988766644478886665
Q ss_pred CCc----hhHHHHHhccccCcEEEE
Q 022372 235 AAP----EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 235 ~~~----~l~~~l~~~LkpGG~Lvi 255 (298)
.-- ++.++....++..-++++
T Consensus 75 MGG~lI~~ILe~~~~~~~~~~~lIL 99 (205)
T PF04816_consen 75 MGGELIIEILEAGPEKLSSAKRLIL 99 (205)
T ss_dssp E-HHHHHHHHHHTGGGGTT--EEEE
T ss_pred CCHHHHHHHHHhhHHHhccCCeEEE
Confidence 432 333444444444445554
No 222
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.01 E-value=6.7e-05 Score=68.62 Aligned_cols=102 Identities=22% Similarity=0.283 Sum_probs=65.2
Q ss_pred CEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH-HhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 153 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIE-KSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 153 ~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~-~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
.+|+=||||. -..+..+++..+++..|+++|+++++++.+++-++ ..++. .++.++.+|+.....+...||+|
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~-----~~m~f~~~d~~~~~~dl~~~DvV 196 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLS-----KRMSFITADVLDVTYDLKEYDVV 196 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH------SSEEEEES-GGGG-GG----SEE
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhccccc-----CCeEEEecchhccccccccCCEE
Confidence 5999999998 45557777665666789999999999999998776 33433 68999999987544344689999
Q ss_pred EECCCC-------chhHHHHHhccccCcEEEEEECC
Q 022372 231 HVGAAA-------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 231 i~~~~~-------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+..+-. .++.+++.+.++||.++++=..+
T Consensus 197 ~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~ 232 (276)
T PF03059_consen 197 FLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAH 232 (276)
T ss_dssp EE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred EEhhhcccccchHHHHHHHHHhhCCCCcEEEEecch
Confidence 888765 36789999999999999984443
No 223
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.98 E-value=0.00018 Score=65.76 Aligned_cols=102 Identities=17% Similarity=0.105 Sum_probs=77.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC--CCC-CCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPE-FAP 226 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~-~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~--~~~-~~~ 226 (298)
..-+||||.||.|....-.....+. ..++...|.++.-++..++.+++.++. +-++|.++|+.+. ... ...
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~-----~i~~f~~~dAfd~~~l~~l~p~ 209 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLE-----DIARFEQGDAFDRDSLAALDPA 209 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCc-----cceEEEecCCCCHhHhhccCCC
Confidence 4469999999999876666655432 258999999999999999999998874 4459999999873 221 234
Q ss_pred ccEEEECCCCchhH---------HHHHhccccCcEEEEEE
Q 022372 227 YDAIHVGAAAPEIP---------QALIDQLKPGGRMVIPV 257 (298)
Q Consensus 227 fD~Ii~~~~~~~l~---------~~l~~~LkpGG~Lvi~v 257 (298)
.|++++.+..+-++ ..+.+.+.|||.||.+-
T Consensus 210 P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 210 PTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred CCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 79998888764332 45678899999999854
No 224
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=0.00011 Score=63.67 Aligned_cols=113 Identities=27% Similarity=0.321 Sum_probs=84.7
Q ss_pred HHHHHHHHHH-ccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 137 MHATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 137 ~~~~~l~~L~-~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
+.+.++.-|. ..+++|.+||=+|+.+|....+++..++ .+.++++|+++......-....+. +|+--+.+
T Consensus 61 LaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R--------~Ni~PIL~ 131 (231)
T COG1889 61 LAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR--------PNIIPILE 131 (231)
T ss_pred HHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC--------CCceeeec
Confidence 3444444443 2478999999999999999999999986 689999999997765554444331 68888999
Q ss_pred CCCCCCCC---CCCccEEEECCCCch----hHHHHHhccccCcEEEEEEC
Q 022372 216 DGRKGWPE---FAPYDAIHVGAAAPE----IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 216 D~~~~~~~---~~~fD~Ii~~~~~~~----l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|+.....- -+..|+|+.+-+.+. +..++...||+||.+++.+-
T Consensus 132 DA~~P~~Y~~~Ve~VDviy~DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iK 181 (231)
T COG1889 132 DARKPEKYRHLVEKVDVIYQDVAQPNQAEILADNAEFFLKKGGYVVIAIK 181 (231)
T ss_pred ccCCcHHhhhhcccccEEEEecCCchHHHHHHHHHHHhcccCCeEEEEEE
Confidence 98864321 146899999988753 34778889999998888663
No 225
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.91 E-value=2.9e-05 Score=67.79 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=59.4
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
+..+++.+. ..+++..|-|+|||.+.++..+. ...+|+..|... .|-.+...|.
T Consensus 60 vd~iI~~l~-~~~~~~viaD~GCGdA~la~~~~----~~~~V~SfDLva---------------------~n~~Vtacdi 113 (219)
T PF05148_consen 60 VDVIIEWLK-KRPKSLVIADFGCGDAKLAKAVP----NKHKVHSFDLVA---------------------PNPRVTACDI 113 (219)
T ss_dssp HHHHHHHHC-TS-TTS-EEEES-TT-HHHHH------S---EEEEESS----------------------SSTTEEES-T
T ss_pred HHHHHHHHH-hcCCCEEEEECCCchHHHHHhcc----cCceEEEeeccC---------------------CCCCEEEecC
Confidence 456677775 24456799999999998874433 224799999753 2224677898
Q ss_pred CCCCCCCCCccEEEECCCC-----chhHHHHHhccccCcEEEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~-----~~l~~~l~~~LkpGG~Lvi~v 257 (298)
...+.++++.|+++...++ .....++.|.|||||.|.|.-
T Consensus 114 a~vPL~~~svDv~VfcLSLMGTn~~~fi~EA~RvLK~~G~L~IAE 158 (219)
T PF05148_consen 114 ANVPLEDESVDVAVFCLSLMGTNWPDFIREANRVLKPGGILKIAE 158 (219)
T ss_dssp TS-S--TT-EEEEEEES---SS-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCcCCCCceeEEEEEhhhhCCCcHHHHHHHHheeccCcEEEEEE
Confidence 8877777999999887776 456799999999999999854
No 226
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.91 E-value=1.9e-05 Score=67.44 Aligned_cols=92 Identities=28% Similarity=0.363 Sum_probs=59.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC--------CCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--------GWP 222 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~--------~~~ 222 (298)
++.+|||+||++|..+.++.+..++.++|+|+|+.+. .. ..++..+.+|..+ ...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~------~~~~~~i~~d~~~~~~~~~i~~~~ 85 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DP------LQNVSFIQGDITNPENIKDIRKLL 85 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-------TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------cc------ccceeeeecccchhhHHHhhhhhc
Confidence 3489999999999999999998656689999999876 00 0344454555432 111
Q ss_pred --CCCCccEEEECCCCc--------h---------hHHHHHhccccCcEEEEEECC
Q 022372 223 --EFAPYDAIHVGAAAP--------E---------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 223 --~~~~fD~Ii~~~~~~--------~---------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
...+||+|+++.+.. + ...-+.+.|||||.+++-+-.
T Consensus 86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 125899999999421 1 112345679999999986643
No 227
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.91 E-value=7.6e-05 Score=69.23 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
.|-+...+++.|. +++|..++|.-+|.|..+..+++.+++ ++|+|+|.++.+++.+++++.... .++.++
T Consensus 5 ~pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-------~R~~~i 74 (305)
T TIGR00006 5 QSVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-------GRVVLI 74 (305)
T ss_pred cchhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-------CcEEEE
Confidence 4667888889887 788899999999999999999998754 899999999999999999886532 589999
Q ss_pred EcCCCCCC-----CCCCCccEEEECCC
Q 022372 214 VGDGRKGW-----PEFAPYDAIHVGAA 235 (298)
Q Consensus 214 ~gD~~~~~-----~~~~~fD~Ii~~~~ 235 (298)
+++..+.. ....++|.|+.+.+
T Consensus 75 ~~nF~~l~~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 75 HDNFANFFEHLDELLVTKIDGILVDLG 101 (305)
T ss_pred eCCHHHHHHHHHhcCCCcccEEEEecc
Confidence 98877521 12246999988875
No 228
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.90 E-value=3.1e-05 Score=66.40 Aligned_cols=92 Identities=20% Similarity=0.226 Sum_probs=73.8
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 232 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~ 232 (298)
+.+.|+|+|+|-++...|+.. .+|+++|.+|...+.|.+|+.-.+. .|+.++.+|+++... ...|+|+|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A---~rViAiE~dPk~a~~a~eN~~v~g~------~n~evv~gDA~~y~f--e~ADvvic 102 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAA---ERVIAIEKDPKRARLAEENLHVPGD------VNWEVVVGDARDYDF--ENADVVIC 102 (252)
T ss_pred hceeeccCCcchHHHHHHhhh---ceEEEEecCcHHHHHhhhcCCCCCC------cceEEEecccccccc--cccceeHH
Confidence 689999999999999999874 6999999999999999999855443 799999999988654 35688866
Q ss_pred CCC--------CchhHHHHHhccccCcEEEE
Q 022372 233 GAA--------APEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 233 ~~~--------~~~l~~~l~~~LkpGG~Lvi 255 (298)
-.- .-.+.+.+.+.||..+.++=
T Consensus 103 EmlDTaLi~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 103 EMLDTALIEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred HHhhHHhhcccccHHHHHHHHHhhcCCcccc
Confidence 542 12345778888998888763
No 229
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.84 E-value=0.00031 Score=65.75 Aligned_cols=105 Identities=10% Similarity=0.116 Sum_probs=73.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE--EEcCCCCCC-
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV--HVGDGRKGW- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~---~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~--~~gD~~~~~- 221 (298)
.+.++..++|+|||+|.-+..|.+.+.+ ..+++++|+|.++++.+.+++..... +.+.+ +.+|..++.
T Consensus 73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~------p~l~v~~l~gdy~~~l~ 146 (319)
T TIGR03439 73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF------SHVRCAGLLGTYDDGLA 146 (319)
T ss_pred hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC------CCeEEEEEEecHHHHHh
Confidence 4677889999999999988877766532 35799999999999999998873221 44544 788776531
Q ss_pred --CC---CCCccEEEECC-CC--------chhHHHHHh-ccccCcEEEEEEC
Q 022372 222 --PE---FAPYDAIHVGA-AA--------PEIPQALID-QLKPGGRMVIPVG 258 (298)
Q Consensus 222 --~~---~~~fD~Ii~~~-~~--------~~l~~~l~~-~LkpGG~Lvi~v~ 258 (298)
+. .....+++.-+ .+ ..+.+++.+ .|+|||.|++-+.
T Consensus 147 ~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D 198 (319)
T TIGR03439 147 WLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLD 198 (319)
T ss_pred hcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecC
Confidence 11 12345554333 33 134477888 9999999999664
No 230
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.84 E-value=0.00012 Score=68.74 Aligned_cols=112 Identities=16% Similarity=0.184 Sum_probs=83.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhcc-CCccCCCCEEEEEcCCCCCCC-CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA-APLLKEGSLSVHVGDGRKGWP-EFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~-~~~l~~~~v~~~~gD~~~~~~-~~~~ 226 (298)
++.-.+||-+|.|.|.-...+.+. +.-.+++-+|.+|++++.++++..-... ...+..++++++..|+.+... ..+.
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~ 365 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM 365 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccc
Confidence 345579999999999999998886 3357999999999999999854422111 234666899999999876432 2358
Q ss_pred ccEEEECCCCch-----------hHHHHHhccccCcEEEEEECCCc
Q 022372 227 YDAIHVGAAAPE-----------IPQALIDQLKPGGRMVIPVGNIF 261 (298)
Q Consensus 227 fD~Ii~~~~~~~-----------l~~~l~~~LkpGG~Lvi~v~~~~ 261 (298)
||.|+++..-+. ...-+.+.|+++|.+++.-+.+.
T Consensus 366 fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y 411 (508)
T COG4262 366 FDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPY 411 (508)
T ss_pred ccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCCCc
Confidence 999999976432 23567789999999999776643
No 231
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.83 E-value=7e-05 Score=61.14 Aligned_cols=58 Identities=19% Similarity=0.310 Sum_probs=48.5
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 154 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
.+||+|||.|+.+..+++. ++..+++++|.++.+.+.++++++.++. .++.++.....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~-~~~~~v~~~E~~~~~~~~l~~~~~~n~~------~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARK-GAEGRVIAFEPLPDAYEILEENVKLNNL------PNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHh-CCCCEEEEEecCHHHHHHHHHHHHHcCC------CcEEEEEeeee
Confidence 4899999999999999988 4667999999999999999999987654 45777766554
No 232
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.83 E-value=0.00017 Score=63.30 Aligned_cols=82 Identities=28% Similarity=0.384 Sum_probs=71.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.++.+.++.||||--+|+..+|.+. ++..++++.|+++..++.|.+++.++++. +++++..+|+...+...+.+
T Consensus 13 ~V~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~-----~~i~vr~~dgl~~l~~~d~~ 86 (226)
T COG2384 13 LVKQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLS-----ERIDVRLGDGLAVLELEDEI 86 (226)
T ss_pred HHHcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCc-----ceEEEeccCCccccCccCCc
Confidence 4567778999999999999999998 57789999999999999999999998876 78999999998777665689
Q ss_pred cEEEECCC
Q 022372 228 DAIHVGAA 235 (298)
Q Consensus 228 D~Ii~~~~ 235 (298)
|+|+..+.
T Consensus 87 d~ivIAGM 94 (226)
T COG2384 87 DVIVIAGM 94 (226)
T ss_pred CEEEEeCC
Confidence 99876665
No 233
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.82 E-value=0.00042 Score=54.15 Aligned_cols=99 Identities=31% Similarity=0.357 Sum_probs=67.4
Q ss_pred EEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC--CCCCC-CCccEEE
Q 022372 155 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK--GWPEF-APYDAIH 231 (298)
Q Consensus 155 VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~--~~~~~-~~fD~Ii 231 (298)
++|+|||+|..+ .+++.......++++|.++.+++.++..... ... ..+.+..++... ..... ..||.+.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGL-----GLVDFVVADALGGVLPFEDSASFDLVI 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCC-----CceEEEEeccccCCCCCCCCCceeEEe
Confidence 999999999987 5555432213899999999999985554432 110 116777777665 22222 3799994
Q ss_pred ECCCC-----chhHHHHHhccccCcEEEEEECCC
Q 022372 232 VGAAA-----PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 232 ~~~~~-----~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
..... .....++.+.|+|+|.+++.....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 158 (257)
T COG0500 125 SLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLR 158 (257)
T ss_pred eeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 44433 456688999999999999876653
No 234
>PRK10742 putative methyltransferase; Provisional
Probab=97.81 E-value=8.9e-05 Score=66.60 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=70.8
Q ss_pred HHHHHHccCCCCC--EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCC---CCEEEEEc
Q 022372 141 CLQLLEENLKPGM--HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKE---GSLSVHVG 215 (298)
Q Consensus 141 ~l~~L~~~l~~g~--~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~---~~v~~~~g 215 (298)
+..... +++|. +|||.-+|+|..+..++.+. ++|+++|.++......++++++......+.. .+++++++
T Consensus 78 l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~G---~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 78 VAKAVG--IKGDYLPDVVDATAGLGRDAFVLASVG---CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred HHHHhC--CCCCCCCEEEECCCCccHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 445554 77877 99999999999999999883 5799999999999999999887422111221 57999999
Q ss_pred CCCCCCCC-CCCccEEEECCCCc
Q 022372 216 DGRKGWPE-FAPYDAIHVGAAAP 237 (298)
Q Consensus 216 D~~~~~~~-~~~fD~Ii~~~~~~ 237 (298)
|....... ...||+|+.+++++
T Consensus 153 da~~~L~~~~~~fDVVYlDPMfp 175 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLDPMFP 175 (250)
T ss_pred cHHHHHhhCCCCCcEEEECCCCC
Confidence 98764432 23799999999874
No 235
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.74 E-value=0.00019 Score=67.36 Aligned_cols=97 Identities=22% Similarity=0.282 Sum_probs=73.7
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~ 225 (298)
.++||++|+-+|+|. |..+..+|+.++ .+|+++|.+++..+.|++-- .-.++.+...+... -.+
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~lG------------Ad~~i~~~~~~~~~~~~~ 228 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKKLG------------ADHVINSSDSDALEAVKE 228 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHHhC------------CcEEEEcCCchhhHHhHh
Confidence 489999999999984 678899999776 79999999999999997642 12333322111111 112
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEEEECCC
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.||+|+...+ ....+...+.||+||++++ ++..
T Consensus 229 ~~d~ii~tv~-~~~~~~~l~~l~~~G~~v~-vG~~ 261 (339)
T COG1064 229 IADAIIDTVG-PATLEPSLKALRRGGTLVL-VGLP 261 (339)
T ss_pred hCcEEEECCC-hhhHHHHHHHHhcCCEEEE-ECCC
Confidence 3999999999 8888999999999999998 5554
No 236
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00024 Score=66.79 Aligned_cols=112 Identities=24% Similarity=0.272 Sum_probs=79.0
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~---~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
|+.-|...++||++|||+++..|.-|+.|.+.+-. .+.|++-|.++..+......+.+ +..+++.+...|+
T Consensus 145 mlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~------l~~~~~~v~~~~~ 218 (375)
T KOG2198|consen 145 MLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKR------LPSPNLLVTNHDA 218 (375)
T ss_pred ccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhc------cCCcceeeecccc
Confidence 44333334899999999999999999888887632 24899999999998888777644 3335555555554
Q ss_pred CCCC-------C--CCCCccEEEECCCCc-----------------------------hhHHHHHhccccCcEEEEEEC
Q 022372 218 RKGW-------P--EFAPYDAIHVGAAAP-----------------------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 218 ~~~~-------~--~~~~fD~Ii~~~~~~-----------------------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.... . +...||.|+++.+.. .+..+..++||+||+||.+.-
T Consensus 219 ~~~p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 219 SLFPNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred eeccccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 4311 1 224799999998641 122456789999999999663
No 237
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.69 E-value=9.1e-05 Score=63.92 Aligned_cols=97 Identities=22% Similarity=0.255 Sum_probs=75.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
-.|++|||+|+|+|..+...++.+ . ..|++.|+.+.....++-|.+.++. ++.+...|... +...||+
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aG-A-~~v~a~d~~P~~~~ai~lNa~angv-------~i~~~~~d~~g---~~~~~Dl 145 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAG-A-AEVVAADIDPWLEQAIRLNAAANGV-------SILFTHADLIG---SPPAFDL 145 (218)
T ss_pred cccceeeecccccChHHHHHHHhh-h-HHHHhcCCChHHHHHhhcchhhccc-------eeEEeeccccC---CCcceeE
Confidence 368899999999999998888874 3 5899999999999999988888764 57777777654 3357999
Q ss_pred EEECCCC------chhHHHHHhccccCcEEEEEECCC
Q 022372 230 IHVGAAA------PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 230 Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
++.+..+ +.+.. +.+.|+..|..|+ ++++
T Consensus 146 ~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vl-vgdp 180 (218)
T COG3897 146 LLAGDLFYNHTEADRLIP-WKDRLAEAGAAVL-VGDP 180 (218)
T ss_pred EEeeceecCchHHHHHHH-HHHHHHhCCCEEE-EeCC
Confidence 9888765 12333 6777888887777 5554
No 238
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.68 E-value=0.00017 Score=67.61 Aligned_cols=86 Identities=22% Similarity=0.283 Sum_probs=63.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
+.+|.++||+||++|..|..+.+.. .+|++||..+ +.. .+ ...++|....+|.....+..+++|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG---~~V~AVD~g~-l~~----~L--------~~~~~V~h~~~d~fr~~p~~~~vD 272 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRG---MFVTAVDNGP-MAQ----SL--------MDTGQVEHLRADGFKFRPPRKNVD 272 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcC---CEEEEEechh-cCH----hh--------hCCCCEEEEeccCcccCCCCCCCC
Confidence 4689999999999999999999983 5999999554 211 11 122789999999887665457899
Q ss_pred EEEECCCCc--hhHHHHHhccccC
Q 022372 229 AIHVGAAAP--EIPQALIDQLKPG 250 (298)
Q Consensus 229 ~Ii~~~~~~--~l~~~l~~~LkpG 250 (298)
.++|+.... .+.+-+.++|..|
T Consensus 273 wvVcDmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 273 WLVCDMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred EEEEecccCHHHHHHHHHHHHhcC
Confidence 999998852 3445555556544
No 239
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.65 E-value=8.6e-05 Score=64.01 Aligned_cols=103 Identities=23% Similarity=0.316 Sum_probs=62.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHH----HHHHHHH-HHhccCCccCCCCEEEEEcCCCCCCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV----VSSIQNI-EKSAAAPLLKEGSLSVHVGDGRKGWPE 223 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l----~~A~~~~-~~~~~~~~l~~~~v~~~~gD~~~~~~~ 223 (298)
+++|++|+|+-.|.||+|..++..+++.+.|++.-..+... +..+.+. .+... ..|++.+-.+.....+.
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~-----~aN~e~~~~~~~A~~~p 120 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPV-----YANVEVIGKPLVALGAP 120 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhh-----hhhhhhhCCcccccCCC
Confidence 89999999999999999999999999999999875443211 1011110 00000 12333333332222222
Q ss_pred CCCccEEEECCC-------------CchhHHHHHhccccCcEEEEEE
Q 022372 224 FAPYDAIHVGAA-------------APEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 224 ~~~fD~Ii~~~~-------------~~~l~~~l~~~LkpGG~Lvi~v 257 (298)
+..|++..... ...+..++++.|||||++++.-
T Consensus 121 -q~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 121 -QKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVED 166 (238)
T ss_pred -CcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEe
Confidence 33454443222 2345578999999999999843
No 240
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.62 E-value=7.9e-05 Score=72.55 Aligned_cols=91 Identities=19% Similarity=0.268 Sum_probs=58.2
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCCcEEEEE---eCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 154 HALDIGSGTGYLTACFALMVGPQGRAVGV---EHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~~~V~gi---D~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
.+||+|||+|.++++|.++- -...++ |..+..++.|.++ |+ +-+--+.+.-+..++ .+.||+|
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~---V~t~s~a~~d~~~~qvqfaleR----Gv------pa~~~~~~s~rLPfp-~~~fDmv 185 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERN---VTTMSFAPNDEHEAQVQFALER----GV------PAMIGVLGSQRLPFP-SNAFDMV 185 (506)
T ss_pred EEEeccceeehhHHHHhhCC---ceEEEcccccCCchhhhhhhhc----Cc------chhhhhhccccccCC-ccchhhh
Confidence 67999999999999999862 222222 4444555555433 11 222122233333444 4899999
Q ss_pred EECCCCc-------hhHHHHHhccccCcEEEEEEC
Q 022372 231 HVGAAAP-------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 231 i~~~~~~-------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+|..... -++-++-|+|+|||.++.+-+
T Consensus 186 Hcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 186 HCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred hcccccccchhcccceeehhhhhhccCceEEecCC
Confidence 9987652 133577899999999998554
No 241
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.57 E-value=0.00054 Score=58.83 Aligned_cols=96 Identities=21% Similarity=0.235 Sum_probs=67.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCCCCC-----
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGW----- 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g-D~~~~~----- 221 (298)
.++|+++|||+||..|..+....++.+|++.|.|||+-.- ....-+.++.+ |+.+..
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------------~p~~Ga~~i~~~dvtdp~~~~ki 128 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------------EPPEGATIIQGNDVTDPETYRKI 128 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------------cCCCCcccccccccCCHHHHHHH
Confidence 3788999999999999999999999999999999997421 11133445554 444311
Q ss_pred ---CCCCCccEEEECCCC--------ch-----hH----HHHHhccccCcEEEEEECCC
Q 022372 222 ---PEFAPYDAIHVGAAA--------PE-----IP----QALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 222 ---~~~~~fD~Ii~~~~~--------~~-----l~----~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.+..+.|+|+++..- .| +. .-....++|+|.+++-+..+
T Consensus 129 ~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 129 FEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred HHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 133678999998753 11 11 22346789999999988664
No 242
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.56 E-value=0.00015 Score=68.85 Aligned_cols=105 Identities=22% Similarity=0.273 Sum_probs=82.6
Q ss_pred HHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC
Q 022372 145 LEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 224 (298)
Q Consensus 145 L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~ 224 (298)
+.....++.+++|+|||.|....+++..-+ ..++|++.++..+.++........+. .+-.++.+|..+.++++
T Consensus 104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~--~~~~Gl~~n~~e~~~~~~~~~~~~l~-----~k~~~~~~~~~~~~fed 176 (364)
T KOG1269|consen 104 LRESCFPGSKVLDVGTGVGGPSRYIAVFKK--AGVVGLDNNAYEAFRANELAKKAYLD-----NKCNFVVADFGKMPFED 176 (364)
T ss_pred HhhcCcccccccccCcCcCchhHHHHHhcc--CCccCCCcCHHHHHHHHHHHHHHHhh-----hhcceehhhhhcCCCCc
Confidence 333577888999999999999999988743 68999999998888877666554443 34445888888888888
Q ss_pred CCccEEEECCCCc------hhHHHHHhccccCcEEEEE
Q 022372 225 APYDAIHVGAAAP------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 225 ~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~ 256 (298)
+.||.+.+..+.. .+.+++++.+||||+.+.-
T Consensus 177 n~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 177 NTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred cccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeH
Confidence 9999997776654 3458999999999999983
No 243
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.55 E-value=0.00039 Score=64.41 Aligned_cols=97 Identities=19% Similarity=0.194 Sum_probs=73.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-----C---
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-----R--- 218 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-----~--- 218 (298)
.+++|.+||-+|+|. |..+...|+.+|. .+|+.+|.++..++.|++ +.. ..+....... .
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA-~~VVi~d~~~~Rle~Ak~-~Ga---------~~~~~~~~~~~~~~~~~~v 234 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGA-SDVVITDLVANRLELAKK-FGA---------TVTDPSSHKSSPQELAELV 234 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCC-CcEEEeecCHHHHHHHHH-hCC---------eEEeeccccccHHHHHHHH
Confidence 388999999999998 9999999999876 699999999999999987 432 1111111110 0
Q ss_pred CCCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+.......+|+.+.....+...+.....+|.||.+++
T Consensus 235 ~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vl 271 (354)
T KOG0024|consen 235 EKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVL 271 (354)
T ss_pred HhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEE
Confidence 0111223599999999999889999999999999666
No 244
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.52 E-value=0.00072 Score=62.52 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=48.6
Q ss_pred CCEEEEEcCCCcHH-HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-ccCCccCCCCEEEEEcCCCC----CC-CCC
Q 022372 152 GMHALDIGSGTGYL-TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHVGDGRK----GW-PEF 224 (298)
Q Consensus 152 g~~VLDiG~GsG~~-t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~-~~~~~l~~~~v~~~~gD~~~----~~-~~~ 224 (298)
.-++||||||.... .+..++.. +.+++|.|+++..++.|++++..+ .+. .+|+++...... +. ...
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--~W~fvaTdID~~sl~~A~~nv~~N~~L~-----~~I~l~~~~~~~~i~~~i~~~~ 175 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--GWSFVATDIDPKSLESARENVERNPNLE-----SRIELRKQKNPDNIFDGIIQPN 175 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHHT-T-T-----TTEEEEE--ST-SSTTTSTT--
T ss_pred ceEeecCCccHHHHHHHHhhhhc--CCeEEEecCCHHHHHHHHHHHHhccccc-----cceEEEEcCCccccchhhhccc
Confidence 45899999998644 34444443 379999999999999999999998 654 788887654322 11 223
Q ss_pred CCccEEEECCCCchhHHHH
Q 022372 225 APYDAIHVGAAAPEIPQAL 243 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l 243 (298)
+.||..+|++++..-.+++
T Consensus 176 e~~dftmCNPPFy~s~~e~ 194 (299)
T PF05971_consen 176 ERFDFTMCNPPFYSSQEEA 194 (299)
T ss_dssp S-EEEEEE-----SS----
T ss_pred ceeeEEecCCccccChhhh
Confidence 5899999999986555443
No 245
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=97.52 E-value=0.00015 Score=64.06 Aligned_cols=110 Identities=16% Similarity=0.050 Sum_probs=78.8
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
.++.+.+.+--+....++|||||-|+....+... + -.+++-+|.|-.|++.++..-. .. -.+....+|..
T Consensus 60 ~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e-~-vekli~~DtS~~M~~s~~~~qd-p~-------i~~~~~v~DEE 129 (325)
T KOG2940|consen 60 DRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGE-G-VEKLIMMDTSYDMIKSCRDAQD-PS-------IETSYFVGDEE 129 (325)
T ss_pred HHHHHHHHHHhhhCcceeecccchhhhhHHHHhc-c-hhheeeeecchHHHHHhhccCC-Cc-------eEEEEEecchh
Confidence 3444544433345568999999999999888764 2 2689999999999999875311 11 13445567766
Q ss_pred CCCCCCCCccEEEECCCCchh------HHHHHhccccCcEEEEEEC
Q 022372 219 KGWPEFAPYDAIHVGAAAPEI------PQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l------~~~l~~~LkpGG~Lvi~v~ 258 (298)
......+++|+|++...++++ +..+...|||+|.++.++-
T Consensus 130 ~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~Fiasml 175 (325)
T KOG2940|consen 130 FLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASML 175 (325)
T ss_pred cccccccchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHh
Confidence 555666899999999887643 3678889999999998663
No 246
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.50 E-value=0.0013 Score=62.24 Aligned_cols=97 Identities=20% Similarity=0.339 Sum_probs=71.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCCC---CCCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRK---GWPE 223 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g-D~~~---~~~~ 223 (298)
.+++.+|+-+|+|+ |.++..+++..|. .+|+.+|.+++.++.|++..... .+..... +... ....
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga-~~Viv~d~~~~Rl~~A~~~~g~~---------~~~~~~~~~~~~~~~~~t~ 235 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGA-SVVIVVDRSPERLELAKEAGGAD---------VVVNPSEDDAGAEILELTG 235 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHhCCCe---------EeecCccccHHHHHHHHhC
Confidence 34555999999999 9999999998765 69999999999999998754221 1111111 0000 1112
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+++-........+.+.+.+++||++++
T Consensus 236 g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~ 267 (350)
T COG1063 236 GRGADVVIEAVGSPPALDQALEALRPGGTVVV 267 (350)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence 23699999998877778999999999999998
No 247
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=97.42 E-value=0.00064 Score=61.18 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=68.2
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+++.+. ..+....|-|+|||-+.++. . ....|++.|+.+ .+-+++..|.
T Consensus 168 ld~ii~~ik-~r~~~~vIaD~GCGEakiA~----~--~~~kV~SfDL~a---------------------~~~~V~~cDm 219 (325)
T KOG3045|consen 168 LDVIIRKIK-RRPKNIVIADFGCGEAKIAS----S--ERHKVHSFDLVA---------------------VNERVIACDM 219 (325)
T ss_pred HHHHHHHHH-hCcCceEEEecccchhhhhh----c--cccceeeeeeec---------------------CCCceeeccc
Confidence 455667665 23345688999999988654 1 225899999642 3456788899
Q ss_pred CCCCCCCCCccEEEECCCC-----chhHHHHHhccccCcEEEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~-----~~l~~~l~~~LkpGG~Lvi~v 257 (298)
.+.+.++++.|+++...++ .....++.+.||+||.+.|.-
T Consensus 220 ~~vPl~d~svDvaV~CLSLMgtn~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 220 RNVPLEDESVDVAVFCLSLMGTNLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred cCCcCccCcccEEEeeHhhhcccHHHHHHHHHHHhccCceEEEEe
Confidence 9887788999999777654 356689999999999999853
No 248
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0011 Score=58.09 Aligned_cols=157 Identities=19% Similarity=0.285 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHhCCCCCCCC-CC-CCC--------CCCCCccc-cCCCcc--ChHHHHHHHHHHHH
Q 022372 80 KNKAMVEHLQHYGVITSKKVSEVMETIDRACFVP-DG-TPP--------YVDSPMAI-GYNATI--SAPHMHATCLQLLE 146 (298)
Q Consensus 80 ~~~~lv~~L~~~g~i~~~~v~~a~~~v~R~~f~p-~~-~~a--------Y~d~~~~~-g~~~~i--s~p~~~~~~l~~L~ 146 (298)
.+..+-+.|.+.|+ .++-...++ .|.. .| .+ ..+ +.|.-+.. +.+..+ ..|.|++.. +.+
T Consensus 26 n~~rly~~lv~~gv-~Selll~~l---~rn~-s~n~~~~a~~~qd~ls~~~D~ll~~~~k~VMm~WEtpiMha~A-~ai- 98 (271)
T KOG1709|consen 26 NQSRLYRRLVEAGV-PSELLLFAL---GRNE-SPNADGNAPYLQDYLSTAEDTLLDSLGKGVMMRWETPIMHALA-EAI- 98 (271)
T ss_pred cHHHHHHHHHHcCC-chhhhhhcc---cccc-CccccccchHHHHHHhhhhhHHHhhccchhhhhhhhHHHHHHH-HHH-
Confidence 35668889999994 554443333 2222 22 11 122 22332221 222222 334444432 222
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022372 147 ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 223 (298)
Q Consensus 147 ~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~ 223 (298)
..+|.+||+||-|-|.....+-+. .| .+=+-+|.+|+.+.+.++. +. ....||.+..|-..+ .+++
T Consensus 99 --~tkggrvLnVGFGMgIidT~iQe~-~p-~~H~IiE~hp~V~krmr~~----gw---~ek~nViil~g~WeDvl~~L~d 167 (271)
T KOG1709|consen 99 --STKGGRVLNVGFGMGIIDTFIQEA-PP-DEHWIIEAHPDVLKRMRDW----GW---REKENVIILEGRWEDVLNTLPD 167 (271)
T ss_pred --hhCCceEEEeccchHHHHHHHhhc-CC-cceEEEecCHHHHHHHHhc----cc---ccccceEEEecchHhhhccccc
Confidence 357889999999999988887776 45 4567789999998877654 32 234788888776554 3333
Q ss_pred CCCccEEEECCCC------chhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAA------PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~------~~l~~~l~~~LkpGG~Lvi 255 (298)
+.||-|+-+.-. .+..+.+.++|||+|++-.
T Consensus 168 -~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 168 -KHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred -cCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEE
Confidence 679999888653 3556889999999998876
No 249
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.38 E-value=0.00016 Score=65.81 Aligned_cols=97 Identities=24% Similarity=0.291 Sum_probs=74.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
...+..++|+|||.|-.+.. .|...++|.|+...++.-+++. +...+..+|+...+....+||
T Consensus 43 ~~~gsv~~d~gCGngky~~~-----~p~~~~ig~D~c~~l~~~ak~~------------~~~~~~~ad~l~~p~~~~s~d 105 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLGV-----NPLCLIIGCDLCTGLLGGAKRS------------GGDNVCRADALKLPFREESFD 105 (293)
T ss_pred cCCcceeeecccCCcccCcC-----CCcceeeecchhhhhccccccC------------CCceeehhhhhcCCCCCCccc
Confidence 44588999999999864221 2445799999999988887642 222678889988777778999
Q ss_pred EEEECCCCchhH---------HHHHhccccCcEEEEEECCCce
Q 022372 229 AIHVGAAAPEIP---------QALIDQLKPGGRMVIPVGNIFQ 262 (298)
Q Consensus 229 ~Ii~~~~~~~l~---------~~l~~~LkpGG~Lvi~v~~~~q 262 (298)
.+++.++.+++. +++.+.|||||...+.+....|
T Consensus 106 ~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 106 AALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred cchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 999999987765 6788999999999987765443
No 250
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.35 E-value=0.0024 Score=58.31 Aligned_cols=104 Identities=24% Similarity=0.232 Sum_probs=72.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH----hc-------------------cC----C-
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK----SA-------------------AA----P- 203 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~----~~-------------------~~----~- 203 (298)
..+||.-|||-|+++-.+|.+. -.+.|.|.|--|+-...-.+.. .. +. +
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G---~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLG---YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhcc---ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 4689999999999999999983 6899999999987555433221 00 00 0
Q ss_pred ------ccCCCCEEEEEcCCCCCCCCC---CCccEEEECCCC---c---hhHHHHHhccccCcEEEEEECC
Q 022372 204 ------LLKEGSLSVHVGDGRKGWPEF---APYDAIHVGAAA---P---EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 204 ------~l~~~~v~~~~gD~~~~~~~~---~~fD~Ii~~~~~---~---~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.-...++....||..+...+. +.||+|+...-+ + ++.+.+.++||||| +.|-+|.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG-~WIN~GP 203 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGG-YWINFGP 203 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCC-EEEecCC
Confidence 011246778888888765554 689999665433 3 34578889999999 5565665
No 251
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.33 E-value=0.0012 Score=60.45 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=39.0
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
..+|||+|+|+|..+..+.+.++...+++++|.|+.+++.++.-+..
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 46999999999987777777766446899999999999999886654
No 252
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.31 E-value=0.011 Score=52.97 Aligned_cols=115 Identities=17% Similarity=0.101 Sum_probs=64.9
Q ss_pred HHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC
Q 022372 137 MHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD 216 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD 216 (298)
...+++-.+...--.|++||=+|=.- ..+..++.. +...+|+.+|+++.+++..++..++.++ +++.++.|
T Consensus 30 ~~~Ra~~~~~~gdL~gk~il~lGDDD-LtSlA~al~-~~~~~I~VvDiDeRll~fI~~~a~~~gl-------~i~~~~~D 100 (243)
T PF01861_consen 30 TLRRAALMAERGDLEGKRILFLGDDD-LTSLALALT-GLPKRITVVDIDERLLDFINRVAEEEGL-------PIEAVHYD 100 (243)
T ss_dssp HHHHHHHHHHTT-STT-EEEEES-TT--HHHHHHHH-T--SEEEEE-S-HHHHHHHHHHHHHHT---------EEEE---
T ss_pred HHHHHHHHHhcCcccCCEEEEEcCCc-HHHHHHHhh-CCCCeEEEEEcCHHHHHHHHHHHHHcCC-------ceEEEEec
Confidence 34554444442233678999998443 233444433 4447999999999999999999888764 49999999
Q ss_pred CCCCCCCC--CCccEEEECCCCc-----hhHHHHHhccccCc-EEEEEECCC
Q 022372 217 GRKGWPEF--APYDAIHVGAAAP-----EIPQALIDQLKPGG-RMVIPVGNI 260 (298)
Q Consensus 217 ~~~~~~~~--~~fD~Ii~~~~~~-----~l~~~l~~~LkpGG-~Lvi~v~~~ 260 (298)
.++.+|+. ++||+++.+++.. -......+.||..| ..++.++..
T Consensus 101 lR~~LP~~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~ 152 (243)
T PF01861_consen 101 LRDPLPEELRGKFDVFFTDPPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHK 152 (243)
T ss_dssp TTS---TTTSS-BSEEEE---SSHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred ccccCCHHHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence 99988763 7999999999863 12355667777544 767766553
No 253
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.30 E-value=0.00027 Score=62.12 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=62.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC----CCCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP----EFAP 226 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~----~~~~ 226 (298)
....|+|.-||.|..+..++... ..|++||++|..+..|+.|++-.|.. ++|+|++||..+... +...
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~---~~VisIdiDPikIa~AkhNaeiYGI~-----~rItFI~GD~ld~~~~lq~~K~~ 165 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQG---PYVIAIDIDPVKIACARHNAEVYGVP-----DRITFICGDFLDLASKLKADKIK 165 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhC---CeEEEEeccHHHHHHHhccceeecCC-----ceeEEEechHHHHHHHHhhhhhe
Confidence 34689999999999999999885 58999999999999999999888765 699999999886432 2234
Q ss_pred ccEEEECCCC
Q 022372 227 YDAIHVGAAA 236 (298)
Q Consensus 227 fD~Ii~~~~~ 236 (298)
+|+++..++.
T Consensus 166 ~~~vf~sppw 175 (263)
T KOG2730|consen 166 YDCVFLSPPW 175 (263)
T ss_pred eeeeecCCCC
Confidence 6677766653
No 254
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.27 E-value=0.0078 Score=53.67 Aligned_cols=97 Identities=28% Similarity=0.234 Sum_probs=67.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE-cCCCCCCCC--CCC
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPE--FAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~-gD~~~~~~~--~~~ 226 (298)
.+|..+||+|+.||.+|.++.+. |. .+|+++|..-..+..--++ .+++.... .+++...++ .+.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~-gA-k~VyavDVG~~Ql~~kLR~-----------d~rV~~~E~tN~r~l~~~~~~~~ 144 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR-GA-KHVYAVDVGYGQLHWKLRN-----------DPRVIVLERTNVRYLTPEDFTEK 144 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc-CC-cEEEEEEccCCccCHhHhc-----------CCcEEEEecCChhhCCHHHcccC
Confidence 46789999999999999999998 33 6999999876554442211 14444443 233321111 136
Q ss_pred ccEEEECCCCc---hhHHHHHhccccCcEEEEEECC
Q 022372 227 YDAIHVGAAAP---EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 227 fD~Ii~~~~~~---~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.|.++++.++. .+...+...++++|.++..+-+
T Consensus 145 ~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKP 180 (245)
T COG1189 145 PDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKP 180 (245)
T ss_pred CCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecc
Confidence 78999988775 4568889999999999987744
No 255
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.21 E-value=0.0026 Score=58.55 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
.|-+...+++.|. ++++...+|.--|.|..+..+.+.+++.++++|+|.++.+++.|++++...+ +++.++
T Consensus 8 ipVLl~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-------~r~~~v 78 (314)
T COG0275 8 IPVLLNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-------GRVTLV 78 (314)
T ss_pred cchHHHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-------CcEEEE
Confidence 3456778888887 8888999999999999999999988777899999999999999999987643 689999
Q ss_pred EcCCCCCC-----CCCCCccEEEECCC
Q 022372 214 VGDGRKGW-----PEFAPYDAIHVGAA 235 (298)
Q Consensus 214 ~gD~~~~~-----~~~~~fD~Ii~~~~ 235 (298)
++...+.. ...+.+|-|+.+.+
T Consensus 79 ~~~F~~l~~~l~~~~i~~vDGiL~DLG 105 (314)
T COG0275 79 HGNFANLAEALKELGIGKVDGILLDLG 105 (314)
T ss_pred eCcHHHHHHHHHhcCCCceeEEEEecc
Confidence 98766421 11247888877764
No 256
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.16 E-value=0.006 Score=55.49 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=68.1
Q ss_pred HHHHHHHHHHccCCCC-CEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 137 MHATCLQLLEENLKPG-MHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 137 ~~~~~l~~L~~~l~~g-~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
+..+....|. -..| ...||+|||- -..+-.+|+...|+.+|+-+|.+|-.+..++..+..... ....++
T Consensus 55 Fl~RaVr~la--~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~------g~t~~v 126 (267)
T PF04672_consen 55 FLRRAVRYLA--EEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR------GRTAYV 126 (267)
T ss_dssp HHHHHHHHHH--CTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT------SEEEEE
T ss_pred HHHHHHHHHH--HhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC------ccEEEE
Confidence 3455566664 2213 5799999995 335666777778999999999999999999988755321 238899
Q ss_pred EcCCCCC-----------CCCCCCccEEEECCCCch---------hHHHHHhccccCcEEEEEECC
Q 022372 214 VGDGRKG-----------WPEFAPYDAIHVGAAAPE---------IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 214 ~gD~~~~-----------~~~~~~fD~Ii~~~~~~~---------l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+|..+. ..+....=.++..+.++. +.+.+.+.|.||..|+++...
T Consensus 127 ~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t 192 (267)
T PF04672_consen 127 QADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHAT 192 (267)
T ss_dssp E--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB
T ss_pred eCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecC
Confidence 9998862 111122224555665544 346788999999999997654
No 257
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.12 E-value=0.0071 Score=59.96 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=91.3
Q ss_pred CCccChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHhccCCcc
Q 022372 129 NATISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLL 205 (298)
Q Consensus 129 ~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~---~~~V~giD~s~~~l~~A~~~~~~~~~~~~l 205 (298)
|+..+..++...+.+.+. +.+..+|.|-.||+|.+....++.++. ...++|.|+++.....|+-|+--++..
T Consensus 166 GEfyTP~~v~~liv~~l~--~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~--- 240 (489)
T COG0286 166 GEFYTPREVSELIVELLD--PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE--- 240 (489)
T ss_pred CccCChHHHHHHHHHHcC--CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC---
Confidence 666676777777778776 467789999999999988888777643 267999999999999999998776642
Q ss_pred CCCCEEEEEcCCCCCC-C----CCCCccEEEECCCCc-------------------------------hhHHHHHhcccc
Q 022372 206 KEGSLSVHVGDGRKGW-P----EFAPYDAIHVGAAAP-------------------------------EIPQALIDQLKP 249 (298)
Q Consensus 206 ~~~~v~~~~gD~~~~~-~----~~~~fD~Ii~~~~~~-------------------------------~l~~~l~~~Lkp 249 (298)
. ++....+|....+ . ..+.||.|+++++.- ...+.+...|+|
T Consensus 241 -~-~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~ 318 (489)
T COG0286 241 -G-DANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKP 318 (489)
T ss_pred -c-cccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCC
Confidence 1 4566666655432 2 235799999988751 001457788999
Q ss_pred CcEEEEEECCC
Q 022372 250 GGRMVIPVGNI 260 (298)
Q Consensus 250 GG~Lvi~v~~~ 260 (298)
||+..+.++.+
T Consensus 319 ~g~aaivl~~g 329 (489)
T COG0286 319 GGRAAIVLPDG 329 (489)
T ss_pred CceEEEEecCC
Confidence 88777666543
No 258
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.09 E-value=0.0021 Score=60.26 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=66.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
..++++||-.|+|. |..+..+++..|. .+|+++|.+++.++.+++ + +....+...+ .+..+.....+.+
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~-~~Vi~~~~~~~~~~~a~~-l---Ga~~vi~~~~-----~~~~~~~~~~g~~ 236 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGA-AEIVCADVSPRSLSLARE-M---GADKLVNPQN-----DDLDHYKAEKGYF 236 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEeCCHHHHHHHHH-c---CCcEEecCCc-----ccHHHHhccCCCC
Confidence 45789999999986 8888888888653 379999999999888865 2 2110011011 1111111112359
Q ss_pred cEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 228 DAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
|+|+.........+...+.|++||+++.
T Consensus 237 D~vid~~G~~~~~~~~~~~l~~~G~iv~ 264 (343)
T PRK09880 237 DVSFEVSGHPSSINTCLEVTRAKGVMVQ 264 (343)
T ss_pred CEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 9999887776677888999999999987
No 259
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.08 E-value=0.0058 Score=53.53 Aligned_cols=114 Identities=17% Similarity=0.240 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHH---cCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCC
Q 022372 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALM---VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 209 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~---~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~ 209 (298)
..|.....+.+.+- .++| +.|+|+|.-.|..+..+|.+ +++.++|+|+|++-....... .+..... ++
T Consensus 16 q~P~Dm~~~qeli~-~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~-----~r 86 (206)
T PF04989_consen 16 QYPQDMVAYQELIW-ELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMS-----PR 86 (206)
T ss_dssp S-HHHHHHHHHHHH-HH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG---------TT
T ss_pred cCHHHHHHHHHHHH-HhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhcccc-----Cc
Confidence 34554554444443 3555 79999999999988877654 456689999999654433221 1112211 79
Q ss_pred EEEEEcCCCCC--------CCCCCCccEEEECCCC--chhH---HHHHhccccCcEEEE
Q 022372 210 LSVHVGDGRKG--------WPEFAPYDAIHVGAAA--PEIP---QALIDQLKPGGRMVI 255 (298)
Q Consensus 210 v~~~~gD~~~~--------~~~~~~fD~Ii~~~~~--~~l~---~~l~~~LkpGG~Lvi 255 (298)
|++++||..+. ........+|+.++.- +++. +.....+++|+.+|+
T Consensus 87 I~~i~Gds~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~~G~Y~IV 145 (206)
T PF04989_consen 87 ITFIQGDSIDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVSPGSYLIV 145 (206)
T ss_dssp EEEEES-SSSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT--TT-EEEE
T ss_pred eEEEECCCCCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCCCCCEEEE
Confidence 99999998752 1111234566666652 3333 557789999999997
No 260
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.07 E-value=0.00015 Score=63.08 Aligned_cols=108 Identities=15% Similarity=0.083 Sum_probs=71.7
Q ss_pred ChHHHHHHHHHHHH-ccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE
Q 022372 133 SAPHMHATCLQLLE-ENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS 211 (298)
Q Consensus 133 s~p~~~~~~l~~L~-~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~ 211 (298)
-++...++++..=. ..-....++||+|+|.|-.+..++..+ .+|++.|.|..|..+.+++ +..
T Consensus 93 fSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~kk-------------~yn 156 (288)
T KOG3987|consen 93 FSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKKK-------------NYN 156 (288)
T ss_pred ecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhhc-------------CCc
Confidence 34444444443321 122345799999999999999999887 6899999999998877543 112
Q ss_pred EEEcCCCCCCCCCCCccEEEECCCCc------hhHHHHHhcccc-CcEEEEEEC
Q 022372 212 VHVGDGRKGWPEFAPYDAIHVGAAAP------EIPQALIDQLKP-GGRMVIPVG 258 (298)
Q Consensus 212 ~~~gD~~~~~~~~~~fD~Ii~~~~~~------~l~~~l~~~Lkp-GG~Lvi~v~ 258 (298)
++.. .+....+-+||+|.|-..+. .+.+.++..|+| +|++++..-
T Consensus 157 Vl~~--~ew~~t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLV 208 (288)
T KOG3987|consen 157 VLTE--IEWLQTDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALV 208 (288)
T ss_pred eeee--hhhhhcCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEE
Confidence 2211 11112224699998776653 466889999999 999888553
No 261
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.00 E-value=0.0019 Score=60.32 Aligned_cols=105 Identities=23% Similarity=0.170 Sum_probs=80.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHH-------HHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVV-------SSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~-------~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
..+||+-|+|-=.|||.+....|+.. +.|+|.|++-.++. ..+.|+++.+.. ..-+.++.+|....
T Consensus 205 mv~pGdivyDPFVGTGslLvsaa~FG---a~viGtDIDyr~vragrg~~~si~aNFkQYg~~----~~fldvl~~D~sn~ 277 (421)
T KOG2671|consen 205 MVKPGDIVYDPFVGTGSLLVSAAHFG---AYVIGTDIDYRTVRAGRGEDESIKANFKQYGSS----SQFLDVLTADFSNP 277 (421)
T ss_pred ccCCCCEEecCccccCceeeehhhhc---ceeeccccchheeecccCCCcchhHhHHHhCCc----chhhheeeecccCc
Confidence 37899999999999999988888874 79999999988887 346788877643 13467888998763
Q ss_pred -CCCCCCccEEEECCCC---------------------------------------chhHHHHHhccccCcEEEEEECC
Q 022372 221 -WPEFAPYDAIHVGAAA---------------------------------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 221 -~~~~~~fD~Ii~~~~~---------------------------------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+-....||+|+|+++. ..+..-..+.|..||++++-++.
T Consensus 278 ~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p~ 356 (421)
T KOG2671|consen 278 PLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLPT 356 (421)
T ss_pred chhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecCc
Confidence 3445689999999873 01113356789999999996663
No 262
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=96.99 E-value=0.002 Score=59.01 Aligned_cols=103 Identities=19% Similarity=0.200 Sum_probs=79.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC--CCCCc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP--EFAPY 227 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~--~~~~f 227 (298)
...++||-||-|.|......++. ..-..+.-+|++...++..++.+...... +..+++.++.||+..... ..++|
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~g--y~~~~v~l~iGDG~~fl~~~~~~~~ 196 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACG--YEGKKVKLLIGDGFLFLEDLKENPF 196 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcc--cCCCceEEEeccHHHHHHHhccCCc
Confidence 34479999999998877666665 33368999999999999999988765443 566899999999875332 24799
Q ss_pred cEEEECCCCc----------hhHHHHHhccccCcEEEE
Q 022372 228 DAIHVGAAAP----------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~~~----------~l~~~l~~~LkpGG~Lvi 255 (298)
|+|+.+..-+ .+.+.+.+.||++|++++
T Consensus 197 dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~ 234 (337)
T KOG1562|consen 197 DVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCT 234 (337)
T ss_pred eEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence 9999887643 233678899999999988
No 263
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.98 E-value=0.0013 Score=61.04 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 134 APHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 134 ~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
.|-+...+++.|. .+++..++|.--|.|..+..+.+.+++ ++++|+|.++++++.|++++... .+++.++
T Consensus 5 ~PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-------~~r~~~~ 74 (310)
T PF01795_consen 5 IPVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-------DDRFIFI 74 (310)
T ss_dssp --TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-------CTTEEEE
T ss_pred ecccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-------cceEEEE
Confidence 4566788899997 888899999999999999999988755 99999999999999998877543 2789999
Q ss_pred EcCCCCC------CCCCCCccEEEECCCC
Q 022372 214 VGDGRKG------WPEFAPYDAIHVGAAA 236 (298)
Q Consensus 214 ~gD~~~~------~~~~~~fD~Ii~~~~~ 236 (298)
+++..+. ......+|.|+.+.+.
T Consensus 75 ~~~F~~l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 75 HGNFSNLDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp ES-GGGHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred eccHHHHHHHHHHccCCCccCEEEEcccc
Confidence 9987642 1123579999988763
No 264
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.97 E-value=0.004 Score=55.95 Aligned_cols=111 Identities=18% Similarity=0.169 Sum_probs=73.4
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
..+.+.+-...++..+|+|||||.=-++..+... .++..++|.|++..+++.....+...+ .+.++...|..
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~-~~~a~Y~a~DID~~~ve~l~~~l~~l~-------~~~~~~v~Dl~ 164 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPE-APGATYIAYDIDSQLVEFLNAFLAVLG-------VPHDARVRDLL 164 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTS-STT-EEEEEESBHHHHHHHHHHHHHTT--------CEEEEEE-TT
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhccc-CCCcEEEEEeCCHHHHHHHHHHHHhhC-------CCcceeEeeee
Confidence 3344444435666789999999998888877765 456799999999999999998887754 46778888888
Q ss_pred CCCCCCCCccEEEECCCCchhH-------HHHHhccccCcEEEEEECC
Q 022372 219 KGWPEFAPYDAIHVGAAAPEIP-------QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l~-------~~l~~~LkpGG~Lvi~v~~ 259 (298)
...+. ...|+.+.--.++-+- -++.+.++- =.++++++.
T Consensus 165 ~~~~~-~~~DlaLllK~lp~le~q~~g~g~~ll~~~~~-~~~vVSfPt 210 (251)
T PF07091_consen 165 SDPPK-EPADLALLLKTLPCLERQRRGAGLELLDALRS-PHVVVSFPT 210 (251)
T ss_dssp TSHTT-SEESEEEEET-HHHHHHHSTTHHHHHHHHSCE-SEEEEEEES
T ss_pred ccCCC-CCcchhhHHHHHHHHHHHhcchHHHHHHHhCC-CeEEEeccc
Confidence 77554 6799999887765333 233444432 355666664
No 265
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=96.91 E-value=0.003 Score=57.27 Aligned_cols=114 Identities=17% Similarity=0.123 Sum_probs=67.2
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHH-HHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhcc---C---------CccC-
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYL-TACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA---A---------PLLK- 206 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~-t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~---~---------~~l~- 206 (298)
+.+.+......|.++||||||+-.. ...+.+.+ ..++..|..+.-.+..++.++..+. + +.-.
T Consensus 46 l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f---~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~ 122 (256)
T PF01234_consen 46 LHETFSSGGVKGETLLDIGSGPTIYQLLSACEWF---EEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKRE 122 (256)
T ss_dssp HHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTE---EEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSS
T ss_pred HHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhh---cceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcc
Confidence 3344443334677999999998432 33333433 5899999999888877666543211 0 0000
Q ss_pred ---------CCCE-EEEEcCCCCCCCCC------CCccEEEECCCCch----------hHHHHHhccccCcEEEEEE
Q 022372 207 ---------EGSL-SVHVGDGRKGWPEF------APYDAIHVGAAAPE----------IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 207 ---------~~~v-~~~~gD~~~~~~~~------~~fD~Ii~~~~~~~----------l~~~l~~~LkpGG~Lvi~v 257 (298)
...| +++..|+.+..+-. .+||+|++...++. ..+++.++|||||.|++..
T Consensus 123 ~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~ 199 (256)
T PF01234_consen 123 KWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAG 199 (256)
T ss_dssp GHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 0123 36678887643321 24999999987643 3367889999999999843
No 266
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.90 E-value=0.0028 Score=56.65 Aligned_cols=86 Identities=22% Similarity=0.340 Sum_probs=51.4
Q ss_pred CCCC--CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCcc---CCCCEEEEEcCCCCCCC-
Q 022372 149 LKPG--MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLL---KEGSLSVHVGDGRKGWP- 222 (298)
Q Consensus 149 l~~g--~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l---~~~~v~~~~gD~~~~~~- 222 (298)
++++ .+|||.-+|-|.-+..+|.. | .+|+++|.+|-+....+.-+++....... ...+++++++|..+.+.
T Consensus 71 lk~~~~~~VLDaTaGLG~Da~vlA~~-G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~ 147 (234)
T PF04445_consen 71 LKPGMRPSVLDATAGLGRDAFVLASL-G--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQ 147 (234)
T ss_dssp -BTTB---EEETT-TTSHHHHHHHHH-T----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCC
T ss_pred CCCCCCCEEEECCCcchHHHHHHHcc-C--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhh
Confidence 5665 49999999999999999976 5 58999999998776665544433221111 01479999999987554
Q ss_pred CCCCccEEEECCCCc
Q 022372 223 EFAPYDAIHVGAAAP 237 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~ 237 (298)
+..+||+|+.++.++
T Consensus 148 ~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 148 PDNSFDVVYFDPMFP 162 (234)
T ss_dssp HSS--SEEEE--S--
T ss_pred cCCCCCEEEECCCCC
Confidence 346899999999875
No 267
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=96.89 E-value=0.0027 Score=52.31 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=54.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--CCCCCccEEEECCCC-c--------------hhH
Q 022372 178 RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--PEFAPYDAIHVGAAA-P--------------EIP 240 (298)
Q Consensus 178 ~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--~~~~~fD~Ii~~~~~-~--------------~l~ 240 (298)
+|+|.|+.+++++.+++++.+.+.. .+++++...-.... .+.+++|+++.|.+. + ...
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~-----~~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al 75 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLE-----DRVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKAL 75 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-G-----SGEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCC-----CcEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHH
Confidence 6999999999999999999997764 58999887654321 121589999988764 1 123
Q ss_pred HHHHhccccCcEEEEEEC
Q 022372 241 QALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 241 ~~l~~~LkpGG~Lvi~v~ 258 (298)
+.+.+.|+|||++++.+-
T Consensus 76 ~~al~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 76 EAALELLKPGGIITIVVY 93 (140)
T ss_dssp HHHHHHEEEEEEEEEEE-
T ss_pred HHHHHhhccCCEEEEEEe
Confidence 678899999999999763
No 268
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=96.82 E-value=0.0065 Score=57.16 Aligned_cols=94 Identities=16% Similarity=0.149 Sum_probs=63.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeC---CHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEH---IPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 224 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~---s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~ 224 (298)
.++|.+||-+|+|. |.++..+++..+ .+|++++. +++..+.+++ .+. ..+.....+..+ ....
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~~~----~Ga------~~v~~~~~~~~~-~~~~ 236 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIVEE----LGA------TYVNSSKTPVAE-VKLV 236 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHH----cCC------EEecCCccchhh-hhhc
Confidence 45789999999987 888888998875 47999987 6777776653 121 111110111100 0112
Q ss_pred CCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 225 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+.+|+|+.............+.|++||++++
T Consensus 237 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 237 GEFDLIIEATGVPPLAFEALPALAPNGVVIL 267 (355)
T ss_pred CCCCEEEECcCCHHHHHHHHHHccCCcEEEE
Confidence 4699999988876677888999999999876
No 269
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.81 E-value=0.0044 Score=58.06 Aligned_cols=90 Identities=20% Similarity=0.269 Sum_probs=72.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 232 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~ 232 (298)
...+|+|.|.|..+..+.... .++-+++++...+..++.++. +.|+.+.+|..+..|. -|+|+.
T Consensus 179 ~~avDvGgGiG~v~k~ll~~f---p~ik~infdlp~v~~~a~~~~----------~gV~~v~gdmfq~~P~---~daI~m 242 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKY---PHIKGINFDLPFVLAAAPYLA----------PGVEHVAGDMFQDTPK---GDAIWM 242 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhC---CCCceeecCHHHHHhhhhhhc----------CCcceecccccccCCC---cCeEEE
Confidence 688999999999998888865 369999999999888876653 2377888998887554 469987
Q ss_pred CCCCc--------hhHHHHHhccccCcEEEEEEC
Q 022372 233 GAAAP--------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 233 ~~~~~--------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
--.++ ++++++++.|+|||.+++.-.
T Consensus 243 kWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 243 KWILHDWTDEDCVKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred EeecccCChHHHHHHHHHHHHhCCCCCEEEEEec
Confidence 77664 456889999999999998443
No 270
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=96.70 E-value=0.01 Score=55.63 Aligned_cols=90 Identities=20% Similarity=0.181 Sum_probs=61.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
+++|++||-+|+|. |.++..+++......+|+++|.+++.++.+++ + + ..... .+ ..+...+
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~--------~~~~~-~~----~~~~~g~ 223 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---D--------ETYLI-DD----IPEDLAV 223 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---C--------ceeeh-hh----hhhccCC
Confidence 57899999999987 77777777652122579999999988888764 1 1 11111 11 1111248
Q ss_pred cEEEECCC---CchhHHHHHhccccCcEEEE
Q 022372 228 DAIHVGAA---APEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~---~~~l~~~l~~~LkpGG~Lvi 255 (298)
|+|+-... .+...+...+.|++||++++
T Consensus 224 d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~ 254 (341)
T cd08237 224 DHAFECVGGRGSQSAINQIIDYIRPQGTIGL 254 (341)
T ss_pred cEEEECCCCCccHHHHHHHHHhCcCCcEEEE
Confidence 99987666 34567888999999999986
No 271
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.68 E-value=0.0075 Score=57.82 Aligned_cols=106 Identities=16% Similarity=0.207 Sum_probs=75.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~fD 228 (298)
..+.+|||.=+|+|.=+...+..++...+|+.-|+++++++..++|++.+++. .+++++.+.|+.... .....||
T Consensus 48 ~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~----~~~~~v~~~DAn~ll~~~~~~fD 123 (377)
T PF02005_consen 48 KGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLE----DERIEVSNMDANVLLYSRQERFD 123 (377)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-S----GCCEEEEES-HHHHHCHSTT-EE
T ss_pred cCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhcccc----CceEEEehhhHHHHhhhccccCC
Confidence 34568999999999999888887544469999999999999999999988764 136888888876543 1347899
Q ss_pred EEEECCCCc--hhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAP--EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~--~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|=+++--. -+.+.+.+.+|.||.|.++-.+
T Consensus 124 ~IDlDPfGSp~pfldsA~~~v~~gGll~vTaTD 156 (377)
T PF02005_consen 124 VIDLDPFGSPAPFLDSALQAVKDGGLLCVTATD 156 (377)
T ss_dssp EEEE--SS--HHHHHHHHHHEEEEEEEEEEE--
T ss_pred EEEeCCCCCccHhHHHHHHHhhcCCEEEEeccc
Confidence 998886432 4568899999999999997643
No 272
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.48 E-value=0.033 Score=55.40 Aligned_cols=94 Identities=21% Similarity=0.291 Sum_probs=65.9
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC---CC-------
Q 022372 150 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD---GR------- 218 (298)
Q Consensus 150 ~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD---~~------- 218 (298)
.++.+|+-+|+|. |..+...|+..|. .|+++|.+++..+.+++. .. ..+.+-..+ ..
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aesl-GA---------~~v~i~~~e~~~~~~gya~~~ 230 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESM-GA---------EFLELDFEEEGGSGDGYAKVM 230 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHc-CC---------eEEEeccccccccccchhhhc
Confidence 4789999999998 8888999998874 799999999999988762 11 111110000 00
Q ss_pred -CC--------CCC-CCCccEEEECCCCc-----hh-HHHHHhccccCcEEEE
Q 022372 219 -KG--------WPE-FAPYDAIHVGAAAP-----EI-PQALIDQLKPGGRMVI 255 (298)
Q Consensus 219 -~~--------~~~-~~~fD~Ii~~~~~~-----~l-~~~l~~~LkpGG~Lvi 255 (298)
.. +.+ ...+|+|+.....+ .+ .++..+.+||||+++.
T Consensus 231 s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVd 283 (509)
T PRK09424 231 SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVD 283 (509)
T ss_pred chhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEE
Confidence 00 000 13589999988763 35 4899999999999886
No 273
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=96.47 E-value=0.03 Score=52.31 Aligned_cols=92 Identities=24% Similarity=0.198 Sum_probs=64.0
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.+++|++||-.|+|. |..+..+|+..| .+|++++.+++..+.+++. +. +. ++... +. ..+.
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a~~~----Ga------~~--vi~~~--~~--~~~~ 223 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLALAL----GA------AS--AGGAY--DT--PPEP 223 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHHh----CC------ce--ecccc--cc--Cccc
Confidence 478899999999875 667788888765 4799999999888777552 22 11 11100 11 1135
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+|+++.............+.|++||++++ ++
T Consensus 224 ~d~~i~~~~~~~~~~~~~~~l~~~G~~v~-~G 254 (329)
T TIGR02822 224 LDAAILFAPAGGLVPPALEALDRGGVLAV-AG 254 (329)
T ss_pred ceEEEECCCcHHHHHHHHHhhCCCcEEEE-Ee
Confidence 88877665555677888899999999977 44
No 274
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.25 E-value=0.035 Score=51.30 Aligned_cols=86 Identities=26% Similarity=0.304 Sum_probs=61.9
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 150 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
.++++||-+|+|. |.++..+++..|. ..|+++|.+++.++.|.+. . ++ +..+. ....+|
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~-~~v~~~~~~~~rl~~a~~~----~-----------~i--~~~~~--~~~g~D 202 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGG-SPPAVWETNPRRRDGATGY----E-----------VL--DPEKD--PRRDYR 202 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHhhhhc----c-----------cc--Chhhc--cCCCCC
Confidence 4578899999987 8888989988753 3577789888776665431 0 00 00000 124699
Q ss_pred EEEECCCCchhHHHHHhccccCcEEEE
Q 022372 229 AIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 229 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+-........+.+.+.|+++|++++
T Consensus 203 vvid~~G~~~~~~~~~~~l~~~G~iv~ 229 (308)
T TIGR01202 203 AIYDASGDPSLIDTLVRRLAKGGEIVL 229 (308)
T ss_pred EEEECCCCHHHHHHHHHhhhcCcEEEE
Confidence 999888877778889999999999996
No 275
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.25 E-value=0.04 Score=51.88 Aligned_cols=97 Identities=19% Similarity=0.153 Sum_probs=66.1
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc---CCCC---C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRK---G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g---D~~~---~ 220 (298)
.+++|++||-.|+|. |..+..+|+..|. .+|+++|.+++..+.+++. +. + .++.. +... .
T Consensus 173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~-~~Vi~~~~~~~~~~~~~~~----Ga------~--~~i~~~~~~~~~~i~~ 239 (358)
T TIGR03451 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGA-SKIIAVDIDDRKLEWAREF----GA------T--HTVNSSGTDPVEAIRA 239 (358)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHc----CC------c--eEEcCCCcCHHHHHHH
Confidence 377899999999876 7788888888652 3699999999988888542 11 1 11111 1000 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
......+|+|+-........+...+.+++||++++ ++
T Consensus 240 ~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~-~G 276 (358)
T TIGR03451 240 LTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVL-VG 276 (358)
T ss_pred HhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEE-EC
Confidence 11223589999777666667788899999999987 44
No 276
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=96.23 E-value=0.016 Score=50.51 Aligned_cols=104 Identities=17% Similarity=0.125 Sum_probs=70.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC-CccCCCCEEEEEcCCCCCCCC---CCCcc
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA-PLLKEGSLSVHVGDGRKGWPE---FAPYD 228 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~-~~l~~~~v~~~~gD~~~~~~~---~~~fD 228 (298)
-.+.|||||-|.+...|+.+. |+.-+.|.|+-....+..++++...+.. ..-.+.|+.+...+.....+. .+..+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred ceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 467999999999999999996 7789999999999999988888765431 111146777777776654331 12222
Q ss_pred EEEECCCC--------------chhHHHHHhccccCcEEEEEE
Q 022372 229 AIHVGAAA--------------PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 229 ~Ii~~~~~--------------~~l~~~l~~~LkpGG~Lvi~v 257 (298)
-.+.-.+- ..+..+..-+|++||.++...
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22222221 233455666899999999844
No 277
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=96.19 E-value=0.052 Score=49.32 Aligned_cols=98 Identities=21% Similarity=0.263 Sum_probs=64.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
..++++||-+|+|+ |..+..+++..|. .+|+++|.+++..+.+++. +....+.... . .+..........+
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~-~~Vi~~~~~~~r~~~a~~~----Ga~~~i~~~~--~--~~~~~~~~~~~g~ 188 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGA-ARVVAADPSPDRRELALSF----GATALAEPEV--L--AERQGGLQNGRGV 188 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHc----CCcEecCchh--h--HHHHHHHhCCCCC
Confidence 45889999999986 7788888888653 3588999999888877652 2110010000 0 0000001122368
Q ss_pred cEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 228 DAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
|+++-........+...+.|+++|++++
T Consensus 189 d~vid~~G~~~~~~~~~~~l~~~G~iv~ 216 (280)
T TIGR03366 189 DVALEFSGATAAVRACLESLDVGGTAVL 216 (280)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCEEEE
Confidence 9999877767777888999999999987
No 278
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.17 E-value=0.024 Score=47.07 Aligned_cols=107 Identities=28% Similarity=0.250 Sum_probs=73.3
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
.+.++.++. -++..+.+|+|+|.|......++.. . ...+|+|.++-++..++-+.-+.+.. +..+|..-|.
T Consensus 61 v~nVLSll~--~n~~GklvDlGSGDGRiVlaaar~g-~-~~a~GvELNpwLVaysrl~a~R~g~~-----k~trf~Rkdl 131 (199)
T KOG4058|consen 61 VENVLSLLR--GNPKGKLVDLGSGDGRIVLAAARCG-L-RPAVGVELNPWLVAYSRLHAWRAGCA-----KSTRFRRKDL 131 (199)
T ss_pred HHHHHHHcc--CCCCCcEEeccCCCceeehhhhhhC-C-CcCCceeccHHHHHHHHHHHHHHhcc-----cchhhhhhhh
Confidence 455566665 4565689999999999988888873 2 46899999999999998877776665 5677777776
Q ss_pred CCCCCCCCCccEEEECCC---CchhHHHHHhccccCcEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAA---APEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~---~~~l~~~l~~~LkpGG~Lvi 255 (298)
.+... ..|..++...+ +..+...+..-+..+.+++.
T Consensus 132 wK~dl--~dy~~vviFgaes~m~dLe~KL~~E~p~nt~vva 170 (199)
T KOG4058|consen 132 WKVDL--RDYRNVVIFGAESVMPDLEDKLRTELPANTRVVA 170 (199)
T ss_pred hhccc--cccceEEEeehHHHHhhhHHHHHhhCcCCCeEEE
Confidence 65433 33444433332 23344566666777777764
No 279
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=96.16 E-value=0.069 Score=49.13 Aligned_cols=94 Identities=23% Similarity=0.252 Sum_probs=65.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC-----CC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK-----GW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~-----~~ 221 (298)
.++++.+||..|+|. |..+..+++..| .+|++++.+++..+.+++. +. .. ++...... ..
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~~----g~------~~--~~~~~~~~~~~~~~~ 227 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKEL----GA------DE--VLNSLDDSPKDKKAA 227 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHh----CC------CE--EEcCCCcCHHHHHHH
Confidence 367889999988774 888888888865 5799999999888777541 21 11 11111000 01
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.....+|+++.........+...+.|+++|+++.
T Consensus 228 ~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~ 261 (338)
T cd08254 228 GLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVV 261 (338)
T ss_pred hcCCCceEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 2235799998776666678888999999999987
No 280
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.12 E-value=0.052 Score=51.83 Aligned_cols=99 Identities=19% Similarity=0.294 Sum_probs=66.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC-CCC---CCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-GRK---GWP 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD-~~~---~~~ 222 (298)
.+.++.+||..|+|. |..+..+++..+. .++++++.+++..+.+++.... ..+.....+ ... ...
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~-~~vi~~~~~~~~~~~~~~~~~~---------~vi~~~~~~~~~~~l~~~~ 250 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGA-ERVIAIDRVPERLEMARSHLGA---------ETINFEEVDDVVEALRELT 250 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHcCCc---------EEEcCCcchHHHHHHHHHc
Confidence 477889999999988 8899999998753 3699999999998888764210 111111111 000 112
Q ss_pred CCCCccEEEECCCC---------------------chhHHHHHhccccCcEEEEE
Q 022372 223 EFAPYDAIHVGAAA---------------------PEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~---------------------~~l~~~l~~~LkpGG~Lvi~ 256 (298)
....+|+|+..... ....+++.+.|+++|+++..
T Consensus 251 ~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~ 305 (386)
T cd08283 251 GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII 305 (386)
T ss_pred CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence 22368998775432 23567888999999999884
No 281
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=96.08 E-value=0.038 Score=53.99 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=75.8
Q ss_pred CCCCC-EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGM-HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~-~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
+.+-. ++|.+|||.-.++..+-+-+ - ..++.+|+|+..++....+... ..+...+...|......++++|
T Consensus 45 ~~p~~~~~l~lGCGNS~l~e~ly~~G-~-~dI~~iD~S~V~V~~m~~~~~~-------~~~~~~~~~~d~~~l~fedESF 115 (482)
T KOG2352|consen 45 LSPSDFKILQLGCGNSELSEHLYKNG-F-EDITNIDSSSVVVAAMQVRNAK-------ERPEMQMVEMDMDQLVFEDESF 115 (482)
T ss_pred hchhhceeEeecCCCCHHHHHHHhcC-C-CCceeccccHHHHHHHHhcccc-------CCcceEEEEecchhccCCCcce
Confidence 45556 99999999998888877753 2 5899999999999888765432 2256788899988877777999
Q ss_pred cEEEECCCCchh----------------HHHHHhccccCcEEEE
Q 022372 228 DAIHVGAAAPEI----------------PQALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~~~~l----------------~~~l~~~LkpGG~Lvi 255 (298)
|+|+.-+.++++ ..++++.|++||+.+.
T Consensus 116 diVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 116 DIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred eEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 999887765432 2578899999999654
No 282
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.05 E-value=0.016 Score=55.88 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=46.6
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 154 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
.|||+|+|+|.++...++.. . -.|+++|.-..|.+.|++-..+++.+ ++++++.
T Consensus 69 ~vLdigtGTGLLSmMAvrag-a-D~vtA~EvfkPM~d~arkI~~kng~S-----dkI~vIn 122 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG-A-DSVTACEVFKPMVDLARKIMHKNGMS-----DKINVIN 122 (636)
T ss_pred EEEEccCCccHHHHHHHHhc-C-CeEEeehhhchHHHHHHHHHhcCCCc-----cceeeec
Confidence 68999999999999888874 3 47999999999999999999998886 6666654
No 283
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=95.98 E-value=0.098 Score=49.56 Aligned_cols=94 Identities=16% Similarity=0.165 Sum_probs=65.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.++++++||-.|+|. |..+..+++..|. .+|+++|.+++..+.+++. +. . .++.....+ .
T Consensus 188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~-~~Vi~~~~~~~r~~~a~~~----Ga------~--~~i~~~~~~~~~~i~~ 254 (371)
T cd08281 188 GVRPGQSVAVVGLGGVGLSALLGAVAAGA-SQVVAVDLNEDKLALAREL----GA------T--ATVNAGDPNAVEQVRE 254 (371)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHHc----CC------c--eEeCCCchhHHHHHHH
Confidence 378899999999876 7788888887653 3699999999988888542 21 1 111111000 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
... +.+|+|+-........+...+.|+++|+++.
T Consensus 255 ~~~-~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~ 288 (371)
T cd08281 255 LTG-GGVDYAFEMAGSVPALETAYEITRRGGTTVT 288 (371)
T ss_pred HhC-CCCCEEEECCCChHHHHHHHHHHhcCCEEEE
Confidence 112 2689999877666677888999999999886
No 284
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=95.98 E-value=0.064 Score=49.86 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=64.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC--CC---CCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG--RK---GWP 222 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~--~~---~~~ 222 (298)
+.+|++||-.|+|. |..+..+++..|. .+|++++.+++..+.+++. +. . .++.... .. ...
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~-~~vi~~~~~~~~~~~~~~~----ga------~--~~i~~~~~~~~~~~~~~ 227 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGA-EDVIGVDPSPERLELAKAL----GA------D--FVINSGQDDVQEIRELT 227 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh----CC------C--EEEcCCcchHHHHHHHh
Confidence 67899999999876 7777888888653 2499999999888777532 21 1 1111100 00 011
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
....+|+|+....-........+.|+++|++++
T Consensus 228 ~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 228 SGAGADVAIECSGNTAARRLALEAVRPWGRLVL 260 (339)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 223699999877766666778899999999986
No 285
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=95.97 E-value=0.013 Score=51.57 Aligned_cols=105 Identities=11% Similarity=0.066 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHh-------------------c----------
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKS-------------------A---------- 200 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~-~~V~giD~s~~~l~~A~~~~~~~-------------------~---------- 200 (298)
.+-++.|-+||+||+...+.-+-++. ..|++-|+++++++.|++|+.-. +
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~s 130 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALES 130 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 34589999999999988887653322 58999999999999999998411 0
Q ss_pred ---cC---Ccc-CCCCEEEEEcCCCCCC-----CCCCCccEEEECCCC---------------chhHHHHHhccccCcEE
Q 022372 201 ---AA---PLL-KEGSLSVHVGDGRKGW-----PEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRM 253 (298)
Q Consensus 201 ---~~---~~l-~~~~v~~~~gD~~~~~-----~~~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~L 253 (298)
+. ... +.....+..+|+.+.- ......|+|+.+.+. ..+++.+...|-+++++
T Consensus 131 A~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV 210 (246)
T PF11599_consen 131 ADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVV 210 (246)
T ss_dssp HHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EE
T ss_pred HHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEE
Confidence 00 001 1234667788887621 122335999888764 34568889999656666
Q ss_pred EE
Q 022372 254 VI 255 (298)
Q Consensus 254 vi 255 (298)
++
T Consensus 211 ~v 212 (246)
T PF11599_consen 211 AV 212 (246)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 286
>PHA01634 hypothetical protein
Probab=95.93 E-value=0.053 Score=43.97 Aligned_cols=47 Identities=17% Similarity=0.026 Sum_probs=41.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 199 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~ 199 (298)
.+.+|+|||++.|..+++++.. |. ..|+++|.++.+.+..+++++.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GA-K~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GA-SFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-Cc-cEEEEeccCHHHHHHHHHHhhhh
Confidence 4689999999999999999987 44 68999999999999999988653
No 287
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.0055 Score=51.57 Aligned_cols=108 Identities=19% Similarity=0.120 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC--CCCCCCCCc
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--KGWPEFAPY 227 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~--~~~~~~~~f 227 (298)
.|.+|||+|.|. |..+..+|... +...|...|-+++.++-.++-...+.. .....+.++.-+.. ....+...|
T Consensus 29 rg~~ilelgggft~laglmia~~a-~~~~v~ltdgne~svrnv~ki~~~n~~---s~~tsc~vlrw~~~~aqsq~eq~tF 104 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKA-PDSSVWLTDGNEESVRNVEKIRNSNMA---SSLTSCCVLRWLIWGAQSQQEQHTF 104 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeec-CCceEEEecCCHHHHHHHHHHHhcccc---cccceehhhHHHHhhhHHHHhhCcc
Confidence 467899999996 55556667664 668999999999999888776554422 12233322221111 112233589
Q ss_pred cEEEECCCC------chhHHHHHhccccCcEEEEEECCCce
Q 022372 228 DAIHVGAAA------PEIPQALIDQLKPGGRMVIPVGNIFQ 262 (298)
Q Consensus 228 D~Ii~~~~~------~~l~~~l~~~LkpGG~Lvi~v~~~~q 262 (298)
|.|++...+ ..+.+.+...|+|.|+-++..|...+
T Consensus 105 DiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 105 DIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRGQ 145 (201)
T ss_pred cEEEeccchhHHHHHHHHHHHHHHHhCcccceeEecCcccc
Confidence 999988764 34668889999999998776665443
No 288
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.88 E-value=0.0081 Score=52.88 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=56.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC---CCCCccE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFAPYDA 229 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~---~~~~fD~ 229 (298)
.++|||||=+.+....-... -.|+.||+++. .-.+.+.|..+-+. +.+.||+
T Consensus 53 lrlLEVGals~~N~~s~~~~----fdvt~IDLns~---------------------~~~I~qqDFm~rplp~~~~e~Fdv 107 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW----FDVTRIDLNSQ---------------------HPGILQQDFMERPLPKNESEKFDV 107 (219)
T ss_pred ceEEeecccCCCCcccccCc----eeeEEeecCCC---------------------CCCceeeccccCCCCCCcccceeE
Confidence 58999999877654433333 36999998752 22345566665322 3468999
Q ss_pred EEECCCCch---------hHHHHHhccccCcE-----EEEEECC
Q 022372 230 IHVGAAAPE---------IPQALIDQLKPGGR-----MVIPVGN 259 (298)
Q Consensus 230 Ii~~~~~~~---------l~~~l~~~LkpGG~-----Lvi~v~~ 259 (298)
|.+..++.- +...+.+.|+|+|. |++.++.
T Consensus 108 Is~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~ 151 (219)
T PF11968_consen 108 ISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPL 151 (219)
T ss_pred EEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCc
Confidence 988877643 44778899999999 7776654
No 289
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.87 E-value=0.1 Score=46.00 Aligned_cols=94 Identities=27% Similarity=0.329 Sum_probs=64.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-----CC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-----WP 222 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~-----~~ 222 (298)
+.++.+||..|+|+ |..+..+++..+ .+|++++.+++..+.+++. +. .. ++....... ..
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g~------~~--~~~~~~~~~~~~~~~~ 197 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAKEL----GA------DH--VIDYKEEDLEEELRLT 197 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHHh----CC------ce--eccCCcCCHHHHHHHh
Confidence 47889999999996 777777888765 6899999998877776432 11 11 111000000 11
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
..+.+|+++...........+.+.|+++|+++..
T Consensus 198 ~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~ 231 (271)
T cd05188 198 GGGGADVVIDAVGGPETLAQALRLLRPGGRIVVV 231 (271)
T ss_pred cCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEE
Confidence 2357999998776646778889999999999873
No 290
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.66 E-value=0.033 Score=44.27 Aligned_cols=85 Identities=21% Similarity=0.271 Sum_probs=62.0
Q ss_pred CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------CCCCCCCccEEEECC
Q 022372 161 GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------GWPEFAPYDAIHVGA 234 (298)
Q Consensus 161 GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~~~~~~~fD~Ii~~~ 234 (298)
|.|..+..+++..| .+|+++|.+++..+.+++. +. . .++..+..+ .......+|+|+-..
T Consensus 1 ~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~~~----Ga------~--~~~~~~~~~~~~~i~~~~~~~~~d~vid~~ 66 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG--AKVIATDRSEEKLELAKEL----GA------D--HVIDYSDDDFVEQIRELTGGRGVDVVIDCV 66 (130)
T ss_dssp HHHHHHHHHHHHTT--SEEEEEESSHHHHHHHHHT----TE------S--EEEETTTSSHHHHHHHHTTTSSEEEEEESS
T ss_pred ChHHHHHHHHHHcC--CEEEEEECCHHHHHHHHhh----cc------c--ccccccccccccccccccccccceEEEEec
Confidence 45888999999987 7999999999998888653 11 1 222222111 112225799999999
Q ss_pred CCchhHHHHHhccccCcEEEEEECCC
Q 022372 235 AAPEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 235 ~~~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
......+...+.|+++|++++ ++..
T Consensus 67 g~~~~~~~~~~~l~~~G~~v~-vg~~ 91 (130)
T PF00107_consen 67 GSGDTLQEAIKLLRPGGRIVV-VGVY 91 (130)
T ss_dssp SSHHHHHHHHHHEEEEEEEEE-ESST
T ss_pred CcHHHHHHHHHHhccCCEEEE-EEcc
Confidence 988899999999999999998 5543
No 291
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.63 E-value=0.075 Score=51.58 Aligned_cols=96 Identities=17% Similarity=0.099 Sum_probs=65.8
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
..++.... ..-+|++|+-+|+|. |...+..++..| .+|+.+|.++...+.|++. +. +....+
T Consensus 190 ~~i~r~t~-~~l~GktVvViG~G~IG~~va~~ak~~G--a~ViV~d~d~~R~~~A~~~----G~---------~~~~~~- 252 (413)
T cd00401 190 DGIKRATD-VMIAGKVAVVAGYGDVGKGCAQSLRGQG--ARVIVTEVDPICALQAAME----GY---------EVMTME- 252 (413)
T ss_pred HHHHHhcC-CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEECChhhHHHHHhc----CC---------EEccHH-
Confidence 34444433 245789999999998 888888888766 4799999999887777541 21 111111
Q ss_pred CCCCCCCCCccEEEECCCCchhHH-HHHhccccCcEEEE
Q 022372 218 RKGWPEFAPYDAIHVGAAAPEIPQ-ALIDQLKPGGRMVI 255 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~l~~-~l~~~LkpGG~Lvi 255 (298)
+.. ..+|+|+.......+.. ...+.+|+||+++.
T Consensus 253 -e~v---~~aDVVI~atG~~~~i~~~~l~~mk~Ggilvn 287 (413)
T cd00401 253 -EAV---KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCN 287 (413)
T ss_pred -HHH---cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEE
Confidence 111 24799998877777665 45899999999876
No 292
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.52 E-value=0.051 Score=48.43 Aligned_cols=88 Identities=16% Similarity=0.137 Sum_probs=57.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh-ccCCccCCCCEEEEEcCCCCCC-----CCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS-AAAPLLKEGSLSVHVGDGRKGW-----PEF 224 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~-~~~~~l~~~~v~~~~gD~~~~~-----~~~ 224 (298)
++.++||||.|.-..=-.+...- -.-+.+|.|+++..++.|+..+..+ ++. ..++++...-.+-. -..
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~e-YgwrfvGseid~~sl~sA~~ii~~N~~l~-----~~I~lr~qk~~~~if~giig~n 151 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHE-YGWRFVGSEIDSQSLSSAKAIISANPGLE-----RAIRLRRQKDSDAIFNGIIGKN 151 (292)
T ss_pred CceEEEeeccCccccccccccee-ecceeecCccCHHHHHHHHHHHHcCcchh-----hheeEEeccCcccccccccccc
Confidence 56689999998643211111110 1258999999999999999998876 332 34666554433211 124
Q ss_pred CCccEEEECCCCchhHHHHH
Q 022372 225 APYDAIHVGAAAPEIPQALI 244 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~ 244 (298)
+.||+++|++++++-.++..
T Consensus 152 E~yd~tlCNPPFh~s~~da~ 171 (292)
T COG3129 152 ERYDATLCNPPFHDSAADAR 171 (292)
T ss_pred ceeeeEecCCCcchhHHHHH
Confidence 68999999999987665544
No 293
>PLN02740 Alcohol dehydrogenase-like
Probab=95.52 E-value=0.033 Score=53.03 Aligned_cols=96 Identities=20% Similarity=0.186 Sum_probs=66.8
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC-----CCC--
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-----GRK-- 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD-----~~~-- 219 (298)
.+++|++||-+|+|. |..+..+|+..|. .+|+++|.+++..+.+++. +. . .++... ..+
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~-~~Vi~~~~~~~r~~~a~~~----Ga------~--~~i~~~~~~~~~~~~v 261 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGA-SKIIGVDINPEKFEKGKEM----GI------T--DFINPKDSDKPVHERI 261 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-CcEEEEcCChHHHHHHHHc----CC------c--EEEecccccchHHHHH
Confidence 478899999999987 8888888888652 3699999999988888541 21 1 111111 000
Q ss_pred -CCCCCCCccEEEECCCCchhHHHHHhccccC-cEEEEEEC
Q 022372 220 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIPVG 258 (298)
Q Consensus 220 -~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~v~ 258 (298)
.... +.+|+|+-........+...+.+++| |++++ ++
T Consensus 262 ~~~~~-~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~-~G 300 (381)
T PLN02740 262 REMTG-GGVDYSFECAGNVEVLREAFLSTHDGWGLTVL-LG 300 (381)
T ss_pred HHHhC-CCCCEEEECCCChHHHHHHHHhhhcCCCEEEE-Ec
Confidence 0112 26999998888777778888899997 98876 44
No 294
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=95.23 E-value=0.17 Score=47.30 Aligned_cols=95 Identities=18% Similarity=0.231 Sum_probs=62.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC-----CCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR-----KGW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~-----~~~ 221 (298)
..+++.+||-.|+|+ |..+..+|+..|. ..|++++.+++..+.+++ + +.. .++..+.. ...
T Consensus 157 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~---Ga~--------~~i~~~~~~~~~~~~~ 223 (347)
T PRK10309 157 QGCEGKNVIIIGAGTIGLLAIQCAVALGA-KSVTAIDINSEKLALAKS-L---GAM--------QTFNSREMSAPQIQSV 223 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHH-c---CCc--------eEecCcccCHHHHHHH
Confidence 367889999999877 7788888888753 347899999988887643 2 211 11111100 001
Q ss_pred CCCCCcc-EEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 PEFAPYD-AIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD-~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.....+| +|+-............+.|++||++++
T Consensus 224 ~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~ 258 (347)
T PRK10309 224 LRELRFDQLILETAGVPQTVELAIEIAGPRAQLAL 258 (347)
T ss_pred hcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 1223577 666655555677888899999999887
No 295
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=95.20 E-value=0.16 Score=47.54 Aligned_cols=97 Identities=21% Similarity=0.241 Sum_probs=62.9
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc---CCCC---C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRK---G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g---D~~~---~ 220 (298)
.+++|.+||-.|+|. |..+..+++..| .+|+++|.+++.++.+++ + +.. .-+..... +..+ .
T Consensus 163 ~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~~-~---Ga~-----~~i~~~~~~~~~~~~~~~~ 231 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMKG-F---GAD-----LTLNPKDKSAREVKKLIKA 231 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-h---CCc-----eEecCccccHHHHHHHHHh
Confidence 478899999999977 888888898875 479999999998888754 2 211 00110000 0000 0
Q ss_pred CCCCCCcc----EEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYD----AIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD----~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+| +|+-........+...+.|++||++++
T Consensus 232 ~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~ 270 (349)
T TIGR03201 232 FAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVV 270 (349)
T ss_pred hcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEE
Confidence 11112344 677665555667778899999999986
No 296
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.02 E-value=0.082 Score=54.35 Aligned_cols=107 Identities=21% Similarity=0.271 Sum_probs=67.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc------CC-----CcEEEEEeCCH---HHHHHH-----------HHHHHHhccC-Cc
Q 022372 151 PGMHALDIGSGTGYLTACFALMV------GP-----QGRAVGVEHIP---ELVVSS-----------IQNIEKSAAA-PL 204 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~------g~-----~~~V~giD~s~---~~l~~A-----------~~~~~~~~~~-~~ 204 (298)
+.-+|+|+|-|+|+......+.+ .+ .-+++++|..| +-+..+ ++-...+... +.
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 34689999999999877776554 12 24899999755 222222 1222111110 00
Q ss_pred -----cCCC--CEEEEEcCCCCCCCCC-CCccEEEECCCC---------chhHHHHHhccccCcEEEEEE
Q 022372 205 -----LKEG--SLSVHVGDGRKGWPEF-APYDAIHVGAAA---------PEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 205 -----l~~~--~v~~~~gD~~~~~~~~-~~fD~Ii~~~~~---------~~l~~~l~~~LkpGG~Lvi~v 257 (298)
+..+ ++++..||+.+..+.. ..||+++.++-. ++++..+.+.++|||+++-..
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 1112 4557778887654432 469999999743 357789999999999999644
No 297
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=94.97 E-value=0.26 Score=46.03 Aligned_cols=95 Identities=22% Similarity=0.272 Sum_probs=65.1
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.++++.+||-.|+|. |..+..+++..|. ..++++|.+++..+.+++ .+. . .++...... .
T Consensus 163 ~~~~g~~vlI~g~g~iG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~g~------~--~~v~~~~~~~~~~i~~ 229 (351)
T cd08285 163 NIKLGDTVAVFGIGPVGLMAVAGARLRGA-GRIIAVGSRPNRVELAKE----YGA------T--DIVDYKNGDVVEQILK 229 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH----cCC------c--eEecCCCCCHHHHHHH
Confidence 377899999999875 7788888888753 369999999888777754 121 1 111111100 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+++....-........+.|+++|+++.
T Consensus 230 ~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 230 LTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISN 264 (351)
T ss_pred HhCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 11224699999776666677888999999999885
No 298
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=94.95 E-value=0.39 Score=44.31 Aligned_cols=93 Identities=20% Similarity=0.229 Sum_probs=62.5
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC----CCC-
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG----RKG- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~----~~~- 220 (298)
.+++|++||-.|. | .|..+..+++..| .+|++++.+++..+.+++ + +. +. ++..+. ...
T Consensus 135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~~-l---Ga------~~--vi~~~~~~~~~~~~ 200 (325)
T TIGR02825 135 GVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLKK-L---GF------DV--AFNYKTVKSLEETL 200 (325)
T ss_pred CCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-c---CC------CE--EEeccccccHHHHH
Confidence 4788999999995 3 4888888998865 579999999888777753 2 21 11 111110 000
Q ss_pred -CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 -WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 -~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
....+.+|+|+-...- ...+...+.|+++|+++.
T Consensus 201 ~~~~~~gvdvv~d~~G~-~~~~~~~~~l~~~G~iv~ 235 (325)
T TIGR02825 201 KKASPDGYDCYFDNVGG-EFSNTVIGQMKKFGRIAI 235 (325)
T ss_pred HHhCCCCeEEEEECCCH-HHHHHHHHHhCcCcEEEE
Confidence 0112469999876554 345788999999999996
No 299
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=94.95 E-value=0.15 Score=48.31 Aligned_cols=94 Identities=21% Similarity=0.204 Sum_probs=59.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCCCCCCCCCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGWPEFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g-D~~~~~~~~~~ 226 (298)
.++|++||-.|+|. |..+..+|+..| .++++++.+++....+.+. .+. . .++.. +........+.
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~G--a~vi~~~~~~~~~~~~~~~---~Ga------~--~vi~~~~~~~~~~~~~~ 247 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFG--LKVTVISSSSNKEDEAINR---LGA------D--SFLVSTDPEKMKAAIGT 247 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCcchhhhHHHh---CCC------c--EEEcCCCHHHHHhhcCC
Confidence 56889999999987 888888898875 4788888776543322222 121 1 11110 00000000124
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+++-........+...+.|++||+++.
T Consensus 248 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~ 276 (360)
T PLN02586 248 MDYIIDTVSAVHALGPLLGLLKVNGKLIT 276 (360)
T ss_pred CCEEEECCCCHHHHHHHHHHhcCCcEEEE
Confidence 89999776655566778999999999986
No 300
>PRK11524 putative methyltransferase; Provisional
Probab=94.92 E-value=0.1 Score=47.94 Aligned_cols=47 Identities=21% Similarity=0.255 Sum_probs=40.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
-.+|+.|||-=+|||..+....++ + .+.+|+|++++.++.|++++..
T Consensus 206 S~~GD~VLDPF~GSGTT~~AA~~l-g--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 206 SNPGDIVLDPFAGSFTTGAVAKAS-G--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHc-C--CCEEEEeCCHHHHHHHHHHHHh
Confidence 578999999999999877766665 4 6899999999999999999864
No 301
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=94.88 E-value=0.39 Score=45.44 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=64.7
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE--cCCCC---CC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV--GDGRK---GW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~--gD~~~---~~ 221 (298)
.+++|++||-.|+|. |..+..+|+..|. .+|+++|.+++..+.+++. +.. .-+.... .+... ..
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~-~~Vi~~~~~~~~~~~a~~~----Ga~-----~~i~~~~~~~~~~~~v~~~ 251 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKA-SRIIAIDINPAKFELAKKL----GAT-----DCVNPNDYDKPIQEVIVEI 251 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHh----CCC-----eEEcccccchhHHHHHHHH
Confidence 478899999999987 7888888888752 3799999999988888542 211 0011100 00000 01
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccC-cEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi 255 (298)
.. +.+|+++-............+.+++| |++++
T Consensus 252 ~~-~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~ 285 (368)
T TIGR02818 252 TD-GGVDYSFECIGNVNVMRAALECCHKGWGESII 285 (368)
T ss_pred hC-CCCCEEEECCCCHHHHHHHHHHhhcCCCeEEE
Confidence 11 25899998777666777888999886 98876
No 302
>PLN02827 Alcohol dehydrogenase-like
Probab=94.86 E-value=0.22 Score=47.48 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=65.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC-----CCC--
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-----GRK-- 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD-----~~~-- 219 (298)
.+++|++||-.|+|. |..+..+++..|. ..|+++|.+++..+.+++. +. .. ++... ...
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~-~~vi~~~~~~~~~~~a~~l----Ga------~~--~i~~~~~~~~~~~~v 256 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGA-SQIIGVDINPEKAEKAKTF----GV------TD--FINPNDLSEPIQQVI 256 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEECCCHHHHHHHHHc----CC------cE--EEcccccchHHHHHH
Confidence 478899999999877 7788888887653 3688999999888777432 21 11 11110 000
Q ss_pred -CCCCCCCccEEEECCCCchhHHHHHhccccC-cEEEEEEC
Q 022372 220 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVIPVG 258 (298)
Q Consensus 220 -~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi~v~ 258 (298)
.... +.+|+|+-............+.|++| |++++ ++
T Consensus 257 ~~~~~-~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~-~G 295 (378)
T PLN02827 257 KRMTG-GGADYSFECVGDTGIATTALQSCSDGWGLTVT-LG 295 (378)
T ss_pred HHHhC-CCCCEEEECCCChHHHHHHHHhhccCCCEEEE-EC
Confidence 0111 26899998777666677889999998 99986 44
No 303
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=94.85 E-value=0.11 Score=45.09 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q 022372 136 HMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 194 (298)
Q Consensus 136 ~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~ 194 (298)
.+..+++... -.+|+.|||.=+|+|..+....++ + .+.+|+|++++.++.|++
T Consensus 179 ~l~~~lI~~~---t~~gdiVlDpF~GSGTT~~aa~~l-~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 179 ELIERLIKAS---TNPGDIVLDPFAGSGTTAVAAEEL-G--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHH---S-TT-EEEETT-TTTHHHHHHHHT-T---EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHhh---hccceeeehhhhccChHHHHHHHc-C--CeEEEEeCCHHHHHHhcC
Confidence 3445555544 678999999999999977766665 4 589999999999999874
No 304
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=94.85 E-value=0.02 Score=52.76 Aligned_cols=102 Identities=23% Similarity=0.300 Sum_probs=74.1
Q ss_pred CCCCEEEEEcCCCcHHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 150 KPGMHALDIGSGTGYLTA-CFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t~-~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..+..|.|+-+|-||+|. .+... |. ..|++.|.+|..++..++++..+... .+..++.||.+..-+. ...|
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~a-gA-k~V~A~EwNp~svEaLrR~~~~N~V~-----~r~~i~~gd~R~~~~~-~~Ad 264 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTA-GA-KTVFACEWNPWSVEALRRNAEANNVM-----DRCRITEGDNRNPKPR-LRAD 264 (351)
T ss_pred cccchhhhhhcccceEEeehhhcc-Cc-cEEEEEecCHHHHHHHHHHHHhcchH-----HHHHhhhccccccCcc-ccch
Confidence 356789999999999998 55554 44 68999999999999999999886553 5566778887765444 6789
Q ss_pred EEEECCCC--chhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAA--PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.|..+.-. ++--..+.+.|||.|-=++.+..
T Consensus 265 rVnLGLlPSse~~W~~A~k~Lk~eggsilHIHe 297 (351)
T KOG1227|consen 265 RVNLGLLPSSEQGWPTAIKALKPEGGSILHIHE 297 (351)
T ss_pred heeeccccccccchHHHHHHhhhcCCcEEEEec
Confidence 98877532 33335567788875554444543
No 305
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=94.79 E-value=0.15 Score=48.21 Aligned_cols=102 Identities=17% Similarity=0.237 Sum_probs=63.5
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.+++|.+||-.|+|. |..+..+|+..|. .+|+++|.+++..+.+++ + +....+..........+....... ..
T Consensus 181 ~~~~g~~vlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~~~~-~---ga~~~i~~~~~~~~~~~~~~~~~~-~g 254 (365)
T cd08277 181 KVEPGSTVAVFGLGAVGLSAIMGAKIAGA-SRIIGVDINEDKFEKAKE-F---GATDFINPKDSDKPVSEVIREMTG-GG 254 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-c---CCCcEeccccccchHHHHHHHHhC-CC
Confidence 378899999999876 7777888888652 379999999988888753 2 211000000000000000000112 36
Q ss_pred ccEEEECCCCchhHHHHHhccccC-cEEEE
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPG-GRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi 255 (298)
+|+|+-............+.|+++ |+++.
T Consensus 255 ~d~vid~~g~~~~~~~~~~~l~~~~G~~v~ 284 (365)
T cd08277 255 VDYSFECTGNADLMNEALESTKLGWGVSVV 284 (365)
T ss_pred CCEEEECCCChHHHHHHHHhcccCCCEEEE
Confidence 899997666556677788899886 99887
No 306
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.78 E-value=0.038 Score=54.01 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=83.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC----CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG----WPEF 224 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~----~~~~ 224 (298)
-.++.+|||.=+++|.-++..|+.++.-.+|++.|.++..++..++|.+.++.. +.++..+.|+... ....
T Consensus 107 ~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~-----~ive~~~~DA~~lM~~~~~~~ 181 (525)
T KOG1253|consen 107 EEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVE-----DIVEPHHSDANVLMYEHPMVA 181 (525)
T ss_pred ccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCch-----hhcccccchHHHHHHhccccc
Confidence 445678999999999999999988765578999999999999999999887654 4566667776531 1122
Q ss_pred CCccEEEECCC--CchhHHHHHhccccCcEEEEEECC
Q 022372 225 APYDAIHVGAA--APEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 225 ~~fD~Ii~~~~--~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
..||+|-.+.- ...+.+.+.+.++.||.|.++..+
T Consensus 182 ~~FDvIDLDPyGs~s~FLDsAvqav~~gGLL~vT~TD 218 (525)
T KOG1253|consen 182 KFFDVIDLDPYGSPSPFLDSAVQAVRDGGLLCVTCTD 218 (525)
T ss_pred cccceEecCCCCCccHHHHHHHHHhhcCCEEEEEecc
Confidence 57999988863 346779999999999999997644
No 307
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.68 E-value=0.06 Score=50.17 Aligned_cols=98 Identities=20% Similarity=0.202 Sum_probs=66.4
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc--CCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRKGWPEF 224 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g--D~~~~~~~~ 224 (298)
.+.||.+|--+|.|. |.++..+|+.+| .+|+++|.+...-+.|-+++.. +. |+.. |....-.-.
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG--~rV~vis~~~~kkeea~~~LGA---------d~--fv~~~~d~d~~~~~~ 244 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMG--MRVTVISTSSKKKEEAIKSLGA---------DV--FVDSTEDPDIMKAIM 244 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhC--cEEEEEeCCchhHHHHHHhcCc---------ce--eEEecCCHHHHHHHH
Confidence 378999999999876 999999999987 6999999998666666555432 21 2211 111000001
Q ss_pred CCccEEEECCC--CchhHHHHHhccccCcEEEEEECC
Q 022372 225 APYDAIHVGAA--APEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 225 ~~fD~Ii~~~~--~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+..|.++-+.. .++-++.+...||++|.+|+ ++-
T Consensus 245 ~~~dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~-vg~ 280 (360)
T KOG0023|consen 245 KTTDGGIDTVSNLAEHALEPLLGLLKVNGTLVL-VGL 280 (360)
T ss_pred HhhcCcceeeeeccccchHHHHHHhhcCCEEEE-EeC
Confidence 34555544444 66777889999999999998 443
No 308
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=94.66 E-value=0.4 Score=46.16 Aligned_cols=108 Identities=19% Similarity=0.175 Sum_probs=67.2
Q ss_pred cCCCCCEEEEEc-CCC-cHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc----CCCC-
Q 022372 148 NLKPGMHALDIG-SGT-GYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG----DGRK- 219 (298)
Q Consensus 148 ~l~~g~~VLDiG-~Gs-G~~t~~La~~~g~~-~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g----D~~~- 219 (298)
.+++|++||-+| +|. |..+..+++..+.. .+|+++|.+++.++.+++........ .+ ....++.. +...
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~--~G-a~~~~i~~~~~~~~~~~ 248 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAAS--RG-IELLYVNPATIDDLHAT 248 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccc--cC-ceEEEECCCccccHHHH
Confidence 367889999997 465 88888888875321 37999999999999987743110000 00 01111111 1000
Q ss_pred --CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 220 --GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 220 --~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.......+|+++.............+.++++|.+++..+
T Consensus 249 v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g 289 (410)
T cd08238 249 LMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAG 289 (410)
T ss_pred HHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEc
Confidence 011224699998876666677888999999998776443
No 309
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=94.62 E-value=0.57 Score=44.06 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=64.3
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc----CCCC--
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG----DGRK-- 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g----D~~~-- 219 (298)
.+++|++||-.|+ | .|..+..+|+..| .+|++++.+++..+.+++.+ +. .. ++.. +..+
T Consensus 155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~~l---Ga------~~--vi~~~~~~~~~~~i 221 (348)
T PLN03154 155 SPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKNKL---GF------DE--AFNYKEEPDLDAAL 221 (348)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHHhc---CC------CE--EEECCCcccHHHHH
Confidence 4788999999998 4 3888899999876 57999999988877765332 11 11 1111 1100
Q ss_pred -CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 220 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 220 -~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.... +.+|+++-...- .......+.|++||++++ ++
T Consensus 222 ~~~~~-~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv~-~G 258 (348)
T PLN03154 222 KRYFP-EGIDIYFDNVGG-DMLDAALLNMKIHGRIAV-CG 258 (348)
T ss_pred HHHCC-CCcEEEEECCCH-HHHHHHHHHhccCCEEEE-EC
Confidence 0112 368999876554 466788999999999986 44
No 310
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=94.53 E-value=0.41 Score=46.02 Aligned_cols=95 Identities=16% Similarity=0.183 Sum_probs=64.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc---CCCC---C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG---DGRK---G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g---D~~~---~ 220 (298)
.++++++||-.|+|. |..+..+++..|. ..++..|.+++.++.|++. +. . .+... +..+ .
T Consensus 182 ~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga-~~vi~~d~~~~r~~~a~~~----Ga------~--~v~~~~~~~~~~~v~~ 248 (393)
T TIGR02819 182 GVGPGSTVYIAGAGPVGLAAAASAQLLGA-AVVIVGDLNPARLAQARSF----GC------E--TVDLSKDATLPEQIEQ 248 (393)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-ceEEEeCCCHHHHHHHHHc----CC------e--EEecCCcccHHHHHHH
Confidence 478899999999887 7888888888764 3466778888888887652 11 1 11111 1000 0
Q ss_pred CCCCCCccEEEECCCCc--------------hhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAP--------------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~--------------~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+++-....+ ...+...+.+++||++++
T Consensus 249 ~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~ 297 (393)
T TIGR02819 249 ILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGI 297 (393)
T ss_pred HcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEE
Confidence 11224689998777654 367888999999999998
No 311
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.52 E-value=0.2 Score=49.90 Aligned_cols=93 Identities=26% Similarity=0.382 Sum_probs=61.6
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE---cCCCCC------
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV---GDGRKG------ 220 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~---gD~~~~------ 220 (298)
++.+|+-+|+|. |..+..+++..| ..|+++|.+++..+.+++ + +. ..+++-. ++...+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lG--A~V~v~d~~~~rle~a~~-l---Ga------~~v~v~~~e~g~~~~gYa~~~s 230 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLG--AIVRAFDTRPEVKEQVQS-M---GA------EFLELDFKEEGGSGDGYAKVMS 230 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-c---CC------eEEeccccccccccccceeecC
Confidence 568999999998 888888888876 469999999998877765 2 11 1111110 110110
Q ss_pred ----------CC-CCCCccEEEECCC-----Cch-hHHHHHhccccCcEEEE
Q 022372 221 ----------WP-EFAPYDAIHVGAA-----APE-IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ----------~~-~~~~fD~Ii~~~~-----~~~-l~~~l~~~LkpGG~Lvi 255 (298)
.. ....+|+|+.... .+. +.++..+.+|||++++=
T Consensus 231 ~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 231 EEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 01 1246999988872 222 45888999999999873
No 312
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=94.39 E-value=0.048 Score=53.30 Aligned_cols=104 Identities=24% Similarity=0.254 Sum_probs=75.6
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-------C
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-------W 221 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~-------~ 221 (298)
...+.++|-+|-|+|.+...+...+ +..+++++|++|++++.|+.++.... ..+.+++..|+... -
T Consensus 293 ~~~~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q------~~r~~V~i~dGl~~~~~~~k~~ 365 (482)
T KOG2352|consen 293 LDTGGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQ------SDRNKVHIADGLDFLQRTAKSQ 365 (482)
T ss_pred ccccCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhh------hhhhhhhHhhchHHHHHHhhcc
Confidence 3455689999999999999988776 45799999999999999999875421 13455666676642 1
Q ss_pred CCCCCccEEEECCCC---------------chhHHHHHhccccCcEEEEEECC
Q 022372 222 PEFAPYDAIHVGAAA---------------PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~---------------~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+...||+++.+-.- ..+...+...|.|.|.+++.+-.
T Consensus 366 ~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 366 QEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred ccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 244689999876432 12335677899999999986643
No 313
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=94.35 E-value=0.33 Score=43.45 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=63.7
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.+.++.+||-.|+|. |..+..+|+..+. .+|++++.+++..+.+++. +.. ..+.....+ ......
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~~~----g~~-----~~~~~~~~~----~~~~~~ 159 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAEAL----GPA-----DPVAADTAD----EIGGRG 159 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHHHc----CCC-----ccccccchh----hhcCCC
Confidence 478899999999876 7778888887653 2499999999888766543 100 111000000 112246
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+|+.............+.|+++|+++.
T Consensus 160 ~d~vl~~~~~~~~~~~~~~~l~~~g~~~~ 188 (277)
T cd08255 160 ADVVIEASGSPSALETALRLLRDRGRVVL 188 (277)
T ss_pred CCEEEEccCChHHHHHHHHHhcCCcEEEE
Confidence 99999775555667788999999999986
No 314
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=94.33 E-value=0.35 Score=45.53 Aligned_cols=112 Identities=18% Similarity=0.198 Sum_probs=77.1
Q ss_pred ccccCCCccChHHHHHHHHHHHHccCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC
Q 022372 124 MAIGYNATISAPHMHATCLQLLEENLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA 202 (298)
Q Consensus 124 ~~~g~~~~is~p~~~~~~l~~L~~~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~ 202 (298)
-.+|++.+-- ....+.... .++|++|--+|+|. |..+..-|+..+. .+++++|++++.++.|++- +
T Consensus 164 ~llGCgV~TG----~Gav~nta~--v~~G~tvaV~GlGgVGlaaI~gA~~agA-~~IiAvD~~~~Kl~~A~~f----G-- 230 (366)
T COG1062 164 CLLGCGVTTG----IGAVVNTAK--VEPGDTVAVFGLGGVGLAAIQGAKAAGA-GRIIAVDINPEKLELAKKF----G-- 230 (366)
T ss_pred EEEeeeeccC----hHHhhhccc--CCCCCeEEEEeccHhHHHHHHHHHHcCC-ceEEEEeCCHHHHHHHHhc----C--
Confidence 3456654432 344556665 89999999999998 6666666777654 7999999999999999753 2
Q ss_pred CccCCCCEEEEEcCCC-------CCCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 203 PLLKEGSLSVHVGDGR-------KGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 203 ~~l~~~~v~~~~gD~~-------~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
-.+++..... ....+ +..|..+-.....+.++..++.++.+|..++
T Consensus 231 ------AT~~vn~~~~~~vv~~i~~~T~-gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~ 283 (366)
T COG1062 231 ------ATHFVNPKEVDDVVEAIVELTD-GGADYAFECVGNVEVMRQALEATHRGGTSVI 283 (366)
T ss_pred ------CceeecchhhhhHHHHHHHhcC-CCCCEEEEccCCHHHHHHHHHHHhcCCeEEE
Confidence 2233332111 11112 3567777777777788888888988998887
No 315
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=94.33 E-value=0.73 Score=43.51 Aligned_cols=95 Identities=20% Similarity=0.270 Sum_probs=64.0
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC----CCC---
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD----GRK--- 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD----~~~--- 219 (298)
.+++|++||-.|+|. |..+..+++..|. .+|+++|.+++..+.+++ + +. ..+ +...+ ...
T Consensus 183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~-~~vi~~~~~~~~~~~~~~-l---Ga------~~~-i~~~~~~~~~~~~v~ 250 (368)
T cd08300 183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGA-SRIIGIDINPDKFELAKK-F---GA------TDC-VNPKDHDKPIQQVLV 250 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-c---CC------CEE-EcccccchHHHHHHH
Confidence 378899999999876 7788888888652 379999999998887753 1 21 111 11111 000
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccC-cEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi 255 (298)
.... +.+|+|+-............+.|+++ |+++.
T Consensus 251 ~~~~-~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~ 286 (368)
T cd08300 251 EMTD-GGVDYTFECIGNVKVMRAALEACHKGWGTSVI 286 (368)
T ss_pred HHhC-CCCcEEEECCCChHHHHHHHHhhccCCCeEEE
Confidence 0112 36899998766556777888999987 98886
No 316
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=94.32 E-value=0.32 Score=44.63 Aligned_cols=91 Identities=19% Similarity=0.307 Sum_probs=63.1
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.++++.+||-.|+|. |..+..+++..| .++++++.+++..+.+++ + +. ..+... + .. .....
T Consensus 152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G--~~vi~~~~~~~~~~~~~~-~---g~------~~~~~~--~--~~-~~~~~ 214 (319)
T cd08242 152 PITPGDKVAVLGDGKLGLLIAQVLALTG--PDVVLVGRHSEKLALARR-L---GV------ETVLPD--E--AE-SEGGG 214 (319)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-c---CC------cEEeCc--c--cc-ccCCC
Confidence 477889999998765 667777777765 468999999888888765 2 21 111111 0 11 22356
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+++....-....+...+.|+++|+++.
T Consensus 215 ~d~vid~~g~~~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 215 FDVVVEATGSPSGLELALRLVRPRGTVVL 243 (319)
T ss_pred CCEEEECCCChHHHHHHHHHhhcCCEEEE
Confidence 99999876555566788889999999997
No 317
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=94.23 E-value=0.21 Score=47.42 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccEE
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAI 230 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD~I 230 (298)
..+|+|.=+|+|.=++..+.-.+. .+|+.-|++|++++.+++|+..+.. .+...++.|+...... ...||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~-~~v~lNDisp~Avelik~Nv~~N~~------~~~~v~n~DAN~lm~~~~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGV-VKVVLNDISPKAVELIKENVRLNSG------EDAEVINKDANALLHELHRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCc-cEEEEccCCHHHHHHHHHHHHhcCc------ccceeecchHHHHHHhcCCCccEE
Confidence 579999999999999888887644 3899999999999999999988622 3555666665432222 3679999
Q ss_pred EECCCC--chhHHHHHhccccCcEEEEEECC
Q 022372 231 HVGAAA--PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 231 i~~~~~--~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
=.++-- .-+.+.+.+.+|.||.|.++-.+
T Consensus 126 DiDPFGSPaPFlDaA~~s~~~~G~l~vTATD 156 (380)
T COG1867 126 DIDPFGSPAPFLDAALRSVRRGGLLCVTATD 156 (380)
T ss_pred ecCCCCCCchHHHHHHHHhhcCCEEEEEecc
Confidence 666532 24558888999999999986543
No 318
>PRK13699 putative methylase; Provisional
Probab=94.05 E-value=0.25 Score=44.06 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=41.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 199 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~ 199 (298)
-.+|+.|||-=||+|..+....+. + .+++|+|++++..+.|.+++...
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~-~--r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQS-G--RRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHc-C--CCEEEEecCHHHHHHHHHHHHHH
Confidence 578999999999999877766665 3 58999999999999999998763
No 319
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.02 E-value=0.07 Score=50.30 Aligned_cols=100 Identities=22% Similarity=0.182 Sum_probs=61.1
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCCCCCccE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPEFAPYDA 229 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~~~~fD~ 229 (298)
.++||+|.|.|.-...+-..++.-..++-+|.++.+-+....-...... .......+|+.. .++....|++
T Consensus 115 qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t------~~td~r~s~vt~dRl~lp~ad~ytl 188 (484)
T COG5459 115 QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST------EKTDWRASDVTEDRLSLPAADLYTL 188 (484)
T ss_pred chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc------ccCCCCCCccchhccCCCccceeeh
Confidence 5799999999987777767664335788888887665444322211111 122233333332 2334456887
Q ss_pred EEECCCC-----ch----hHHHHHhccccCcEEEEEEC
Q 022372 230 IHVGAAA-----PE----IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 230 Ii~~~~~-----~~----l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+++..-+ +. ..+.++..+.|||.||+.-+
T Consensus 189 ~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivEr 226 (484)
T COG5459 189 AIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVER 226 (484)
T ss_pred hhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeC
Confidence 7665432 22 45788999999999999543
No 320
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=94.00 E-value=0.53 Score=43.77 Aligned_cols=102 Identities=22% Similarity=0.230 Sum_probs=63.4
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEE--EEcCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSV--HVGDGRKGWPEF 224 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~--~~gD~~~~~~~~ 224 (298)
.++++.+||-.|+|. |..+..+|+..|. ..|++++.+++..+.+++. +....+......+ ....... ....
T Consensus 159 ~~~~g~~vlI~g~g~vG~~a~~lak~~G~-~~v~~~~~~~~~~~~~~~~----g~~~vi~~~~~~~~~~~~~~~~-~~~~ 232 (343)
T cd05285 159 GVRPGDTVLVFGAGPIGLLTAAVAKAFGA-TKVVVTDIDPSRLEFAKEL----GATHTVNVRTEDTPESAEKIAE-LLGG 232 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHc----CCcEEeccccccchhHHHHHHH-HhCC
Confidence 478899999988876 7888888888652 2388998888877766442 2110000000000 0000001 1222
Q ss_pred CCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 225 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
..+|+|+.............+.|+++|+++.
T Consensus 233 ~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 233 KGPDVVIECTGAESCIQTAIYATRPGGTVVL 263 (343)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 4599999876655567888999999999886
No 321
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=93.89 E-value=0.27 Score=46.33 Aligned_cols=97 Identities=14% Similarity=0.193 Sum_probs=61.4
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.++|.+||-.|+|. |..+..+++..| .+++.++.+++..+.+.+.+ +. ..+ +...+..........+
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G--~~vi~~~~~~~~~~~~~~~~---Ga------~~~-i~~~~~~~~~~~~~~~ 245 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMG--HHVTVISSSDKKREEALEHL---GA------DDY-LVSSDAAEMQEAADSL 245 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHhc---CC------cEE-ecCCChHHHHHhcCCC
Confidence 46789999998876 788888888865 46888888877655554332 21 111 1111100000001258
Q ss_pred cEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 228 DAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 228 D~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|+++-........+...+.|++||+++. ++
T Consensus 246 D~vid~~g~~~~~~~~~~~l~~~G~iv~-~G 275 (357)
T PLN02514 246 DYIIDTVPVFHPLEPYLSLLKLDGKLIL-MG 275 (357)
T ss_pred cEEEECCCchHHHHHHHHHhccCCEEEE-EC
Confidence 9998776655667778899999999887 44
No 322
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=93.80 E-value=0.86 Score=42.97 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=63.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC----C----
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG----R---- 218 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~----~---- 218 (298)
.+++|++||-.|+|. |..+..+++..|. .+|++++.+++..+.+++ + +. . .++.... .
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~-~~vi~~~~~~~~~~~~~~-~---Ga------~--~~i~~~~~~~~~~~~v 250 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGA-SRIIGVDLNPSKFEQAKK-F---GV------T--EFVNPKDHDKPVQEVI 250 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH-c---CC------c--eEEcccccchhHHHHH
Confidence 478899999999876 7777888887652 379999999998888754 2 21 1 1111110 0
Q ss_pred CCCCCCCCccEEEECCCCchhHHHHHhccccC-cEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 255 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi 255 (298)
..... +.+|+++-............+.+++| |++++
T Consensus 251 ~~~~~-~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~ 287 (369)
T cd08301 251 AEMTG-GGVDYSFECTGNIDAMISAFECVHDGWGVTVL 287 (369)
T ss_pred HHHhC-CCCCEEEECCCChHHHHHHHHHhhcCCCEEEE
Confidence 00112 36899987766666677788899996 98876
No 323
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=93.78 E-value=1.2 Score=41.63 Aligned_cols=94 Identities=18% Similarity=0.226 Sum_probs=61.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC---------
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--------- 218 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~--------- 218 (298)
..++.+||-.|+|. |..+..+++..|. .+|++++.+++..+.+++ .+. .. ++.....
T Consensus 175 ~~~g~~vlI~g~g~vG~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~g~------~~--vi~~~~~~~~~~~~~i 241 (361)
T cd08231 175 VGAGDTVVVQGAGPLGLYAVAAAKLAGA-RRVIVIDGSPERLELARE----FGA------DA--TIDIDELPDPQRRAIV 241 (361)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH----cCC------Ce--EEcCcccccHHHHHHH
Confidence 34788999999876 7777888888653 389999988887766642 121 11 1111100
Q ss_pred CCCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 219 KGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
........+|+++.............+.|+++|+++.
T Consensus 242 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 242 RDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVL 278 (361)
T ss_pred HHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEE
Confidence 0111224699999766555566788899999999986
No 324
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=93.76 E-value=0.22 Score=46.18 Aligned_cols=95 Identities=18% Similarity=0.238 Sum_probs=61.2
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
++.+||..|+|. |..+..+++..|. .++++++.+++..+.+++. +....+.... .+..........+|+
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~-~~v~~~~~s~~~~~~~~~~----g~~~vi~~~~-----~~~~~~~~~~~~vd~ 234 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGA-AEIVATDLADAPLAVARAM----GADETVNLAR-----DPLAAYAADKGDFDV 234 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHc----CCCEEEcCCc-----hhhhhhhccCCCccE
Confidence 789999988876 7777888887642 2789999988877765432 1110010000 001111112235999
Q ss_pred EEECCCCchhHHHHHhccccCcEEEE
Q 022372 230 IHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 230 Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
++.........+.+.+.|+++|+++.
T Consensus 235 vld~~g~~~~~~~~~~~L~~~G~~v~ 260 (339)
T cd08232 235 VFEASGAPAALASALRVVRPGGTVVQ 260 (339)
T ss_pred EEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 99876655567888999999999986
No 325
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.75 E-value=0.75 Score=40.56 Aligned_cols=112 Identities=16% Similarity=0.183 Sum_probs=72.8
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcH--HHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGY--LTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~--~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
.+.++..|.. -.....++++.++.|. .+..|+... ..++++++|-.+++.....++.+...+.. +.++|+.
T Consensus 29 ~aEfISAlAA-G~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~-----~~vEfvv 102 (218)
T PF07279_consen 29 VAEFISALAA-GWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLS-----DVVEFVV 102 (218)
T ss_pred HHHHHHHHhc-cccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhcccc-----ccceEEe
Confidence 4555666652 2233567888766442 344443221 23479999999998888888888776543 5578888
Q ss_pred cCCCC-CCCCCCCccEEEECCCCchhHHHHHhccc--cCcEEEE
Q 022372 215 GDGRK-GWPEFAPYDAIHVGAAAPEIPQALIDQLK--PGGRMVI 255 (298)
Q Consensus 215 gD~~~-~~~~~~~fD~Ii~~~~~~~l~~~l~~~Lk--pGG~Lvi 255 (298)
++..+ ..+.....|.++++.-.++..+.+++.++ |.|-+++
T Consensus 103 g~~~e~~~~~~~~iDF~vVDc~~~d~~~~vl~~~~~~~~GaVVV 146 (218)
T PF07279_consen 103 GEAPEEVMPGLKGIDFVVVDCKREDFAARVLRAAKLSPRGAVVV 146 (218)
T ss_pred cCCHHHHHhhccCCCEEEEeCCchhHHHHHHHHhccCCCceEEE
Confidence 88543 33344578999999998877766666554 4566554
No 326
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=93.42 E-value=0.84 Score=42.21 Aligned_cols=98 Identities=21% Similarity=0.307 Sum_probs=61.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~ 223 (298)
.++++.+||..|+|. |..+..+++..+. ..+++++.++...+.+++. +.. .-+.....+... ....
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~-~~v~~~~~~~~~~~~~~~~----g~~-----~vi~~~~~~~~~~i~~~~~ 233 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGA-ARIIAVDSNPERLDLAKEA----GAT-----DIINPKNGDIVEQILELTG 233 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHh----CCc-----EEEcCCcchHHHHHHHHcC
Confidence 467889999988764 7777888887642 3788888888777666532 110 000111111000 0112
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+++.........+...+.|+++|+++.
T Consensus 234 ~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~ 265 (347)
T cd05278 234 GRGVDCVIEAVGFEETFEQAVKVVRPGGTIAN 265 (347)
T ss_pred CCCCcEEEEccCCHHHHHHHHHHhhcCCEEEE
Confidence 24699998765544577888899999999885
No 327
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=93.41 E-value=0.24 Score=45.98 Aligned_cols=94 Identities=22% Similarity=0.261 Sum_probs=62.1
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~ 223 (298)
.+.++.+||-.|+|. |..+..+++..| .+++.++.+++..+.+++ + +.. .++.....+ ....
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~-~---g~~--------~~i~~~~~~~~~~~~~ 225 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMG--FRTVAISRGSDKADLARK-L---GAH--------HYIDTSKEDVAEALQE 225 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEeCChHHHHHHHH-c---CCc--------EEecCCCccHHHHHHh
Confidence 377889999999766 777788888765 479999999887777743 2 111 111111000 0001
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+++.............+.|+++|+++.
T Consensus 226 ~~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 226 LGGAKLILATAPNAKAISALVGGLAPRGKLLI 257 (333)
T ss_pred cCCCCEEEECCCchHHHHHHHHHcccCCEEEE
Confidence 13589999765445667788999999999886
No 328
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=93.30 E-value=1.8 Score=40.07 Aligned_cols=93 Identities=16% Similarity=0.223 Sum_probs=61.3
Q ss_pred CCCC--CEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC-----
Q 022372 149 LKPG--MHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----- 219 (298)
Q Consensus 149 l~~g--~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~----- 219 (298)
++++ ++||-.|+ | .|..+..+|+..|. .+|++++.+++..+.+++.+. . .. ++......
T Consensus 150 ~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~-~~Vi~~~~s~~~~~~~~~~lG---a------~~--vi~~~~~~~~~~i 217 (345)
T cd08293 150 ITPGANQTMVVSGAAGACGSLAGQIGRLLGC-SRVVGICGSDEKCQLLKSELG---F------DA--AINYKTDNVAERL 217 (345)
T ss_pred CCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHhcC---C------cE--EEECCCCCHHHHH
Confidence 5555 89999997 3 47888888988752 279999999888777765432 1 11 11111100
Q ss_pred -CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 -GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 -~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.... ..+|+|+....-. ......+.|+++|+++.
T Consensus 218 ~~~~~-~gvd~vid~~g~~-~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 218 RELCP-EGVDVYFDNVGGE-ISDTVISQMNENSHIIL 252 (345)
T ss_pred HHHCC-CCceEEEECCCcH-HHHHHHHHhccCCEEEE
Confidence 0112 4699999765544 35788999999999986
No 329
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=93.30 E-value=0.5 Score=44.03 Aligned_cols=50 Identities=18% Similarity=0.174 Sum_probs=35.7
Q ss_pred HHHHHHHHHccCCC------CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHH
Q 022372 138 HATCLQLLEENLKP------GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVV 190 (298)
Q Consensus 138 ~~~~l~~L~~~l~~------g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~ 190 (298)
...+++.|....++ ..++|.-|||.|+++..|+..+ . .+-|-|+|--|+-
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G-~--~~qGNEfSy~Mli 186 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLG-F--KCQGNEFSYFMLI 186 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhc-c--cccccHHHHHHHH
Confidence 44466666544443 5689999999999999999984 3 4556677766653
No 330
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.28 E-value=0.36 Score=47.83 Aligned_cols=95 Identities=23% Similarity=0.213 Sum_probs=66.0
Q ss_pred CEEEEEcCCCcHHHHHH---HHHcCCCcEEEEEeCCHHHHHHHHH-HHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 153 MHALDIGSGTGYLTACF---ALMVGPQGRAVGVEHIPELVVSSIQ-NIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~L---a~~~g~~~~V~giD~s~~~l~~A~~-~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
..++-+|+|.|-+.... ++....+-+++++|-+|.++-..+. +...++ .+|+++.+|.+...++....|
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~-------~~Vtii~~DMR~w~ap~eq~D 441 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWD-------NRVTIISSDMRKWNAPREQAD 441 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhc-------CeeEEEeccccccCCchhhcc
Confidence 35789999999765443 4443344689999999999877654 233332 689999999988665446789
Q ss_pred EEEECCC--------CchhHHHHHhccccCcEEE
Q 022372 229 AIHVGAA--------APEIPQALIDQLKPGGRMV 254 (298)
Q Consensus 229 ~Ii~~~~--------~~~l~~~l~~~LkpGG~Lv 254 (298)
.+++-.- -++-.+.+.+.|||.|+-+
T Consensus 442 I~VSELLGSFGDNELSPECLDG~q~fLkpdgIsI 475 (649)
T KOG0822|consen 442 IIVSELLGSFGDNELSPECLDGAQKFLKPDGISI 475 (649)
T ss_pred chHHHhhccccCccCCHHHHHHHHhhcCCCceEc
Confidence 8854321 1345567788999997654
No 331
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=93.24 E-value=1.9 Score=39.49 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=62.4
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+++|.+||-.|. | .|..+..+++..| .+|++++.+++..+.+++ + +. . .++.....+
T Consensus 140 ~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~-~---Ga------~--~vi~~~~~~~~~~v~ 205 (329)
T cd08294 140 KPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE-L---GF------D--AVFNYKTVSLEEALK 205 (329)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-c---CC------C--EEEeCCCccHHHHHH
Confidence 4788999999984 3 3778888898875 479999999888777764 2 21 1 111111000
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.... ..+|+|+-...- .......+.|+++|+++.
T Consensus 206 ~~~~-~gvd~vld~~g~-~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 206 EAAP-DGIDCYFDNVGG-EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred HHCC-CCcEEEEECCCH-HHHHHHHHhhccCCEEEE
Confidence 0112 468999876554 566888999999999976
No 332
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=93.17 E-value=0.33 Score=44.44 Aligned_cols=70 Identities=16% Similarity=0.056 Sum_probs=51.5
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--CCCccEEE
Q 022372 154 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE--FAPYDAIH 231 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~--~~~fD~Ii 231 (298)
+|+|+-||.|.++.-+.+. |- ..+.++|+++.+++..+.|... . +..+|..+.... ...+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~-~~v~a~e~~~~a~~~~~~N~~~-----------~-~~~~Di~~~~~~~~~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GF-EIVAANEIDKSAAETYEANFPN-----------K-LIEGDITKIDEKDFIPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CC-EEEEEEeCCHHHHHHHHHhCCC-----------C-CccCccccCchhhcCCCCCEEE
Confidence 6899999999998888776 32 4789999999999888877532 1 445565543322 25699999
Q ss_pred ECCCCc
Q 022372 232 VGAAAP 237 (298)
Q Consensus 232 ~~~~~~ 237 (298)
.+.+..
T Consensus 68 ~gpPCq 73 (275)
T cd00315 68 GGFPCQ 73 (275)
T ss_pred eCCCCh
Confidence 998763
No 333
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=93.09 E-value=0.86 Score=41.90 Aligned_cols=95 Identities=20% Similarity=0.256 Sum_probs=62.5
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC----CCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----GWP 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~----~~~ 222 (298)
.+.++.+||..|+|. |..+..+++..|. ..++.++.+++..+.+++. +. . .++..+... ...
T Consensus 156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~~----g~------~--~~~~~~~~~~~~~~~~ 222 (334)
T cd08234 156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGA-SRVTVAEPNEEKLELAKKL----GA------T--ETVDPSREDPEAQKED 222 (334)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHh----CC------e--EEecCCCCCHHHHHHh
Confidence 477889999998764 6677777887642 2388899998877776432 11 1 122111111 011
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
....+|+++.............+.|+++|+++.
T Consensus 223 ~~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~ 255 (334)
T cd08234 223 NPYGFDVVIEATGVPKTLEQAIEYARRGGTVLV 255 (334)
T ss_pred cCCCCcEEEECCCChHHHHHHHHHHhcCCEEEE
Confidence 225699999876555677888899999999876
No 334
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=93.04 E-value=1.5 Score=40.62 Aligned_cols=95 Identities=18% Similarity=0.155 Sum_probs=63.5
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEc-CCC---CC
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVG-DGR---KG 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v-~~~~g-D~~---~~ 220 (298)
.+++|++||-.|+ | .|..+..+++..| .+|++++.+++..+.+++.+. . ..+ ..... +.. ..
T Consensus 148 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~lG---a------~~vi~~~~~~~~~~~i~~ 216 (338)
T cd08295 148 KPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNKLG---F------DDAFNYKEEPDLDAALKR 216 (338)
T ss_pred CCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhcC---C------ceeEEcCCcccHHHHHHH
Confidence 4789999999997 3 3788888898876 579999988888777765332 1 111 10000 110 01
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
... ..+|+|+-...- .......+.|+++|+++.
T Consensus 217 ~~~-~gvd~v~d~~g~-~~~~~~~~~l~~~G~iv~ 249 (338)
T cd08295 217 YFP-NGIDIYFDNVGG-KMLDAVLLNMNLHGRIAA 249 (338)
T ss_pred hCC-CCcEEEEECCCH-HHHHHHHHHhccCcEEEE
Confidence 112 468999876554 566788999999999986
No 335
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=92.96 E-value=1.3 Score=40.72 Aligned_cols=92 Identities=25% Similarity=0.254 Sum_probs=61.1
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.++++.+||-.|+|. |..+..+++..+ .+++.++.+++..+.+++ + +. . .++..+. . ....
T Consensus 164 ~~~~~~~vlV~g~g~vg~~~~~la~~~g--~~v~~~~~~~~~~~~~~~-~---g~------~--~~~~~~~--~--~~~~ 225 (329)
T cd08298 164 GLKPGQRLGLYGFGASAHLALQIARYQG--AEVFAFTRSGEHQELARE-L---GA------D--WAGDSDD--L--PPEP 225 (329)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCC--CeEEEEcCChHHHHHHHH-h---CC------c--EEeccCc--c--CCCc
Confidence 477889999998876 666677777755 589999888876666632 1 11 1 1111111 0 1246
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+|+++.........+...+.|+++|+++. ++
T Consensus 226 vD~vi~~~~~~~~~~~~~~~l~~~G~~v~-~g 256 (329)
T cd08298 226 LDAAIIFAPVGALVPAALRAVKKGGRVVL-AG 256 (329)
T ss_pred ccEEEEcCCcHHHHHHHHHHhhcCCEEEE-Ec
Confidence 89888754445677889999999999995 44
No 336
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=92.78 E-value=1.1 Score=41.54 Aligned_cols=97 Identities=20% Similarity=0.227 Sum_probs=64.0
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~ 223 (298)
.+.++.+||..|+|. |..+..+|+..+ .+|+++..+++..+.+++. +.. .-+.....+... ....
T Consensus 156 ~l~~g~~vLI~g~g~vG~~a~~lA~~~g--~~v~~~~~s~~~~~~~~~~----g~~-----~v~~~~~~~~~~~l~~~~~ 224 (337)
T cd08261 156 GVTAGDTVLVVGAGPIGLGVIQVAKARG--ARVIVVDIDDERLEFAREL----GAD-----DTINVGDEDVAARLRELTD 224 (337)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEECCCHHHHHHHHHh----CCC-----EEecCcccCHHHHHHHHhC
Confidence 478899999998875 788888888865 5799998888877776432 111 001111111000 1112
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+++....-......+.+.|+++|+++.
T Consensus 225 ~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~ 256 (337)
T cd08261 225 GEGADVVIDATGNPASMEEAVELVAHGGRVVL 256 (337)
T ss_pred CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 24699999876555677888999999999885
No 337
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=92.73 E-value=1.2 Score=41.89 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=64.4
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.++++.+||-.|+|. |..+..+++..|. ..+++++.+++..+.+++. +. . .++..+... .
T Consensus 183 ~~~~g~~vlI~g~g~vG~~~~~la~~~G~-~~v~~~~~~~~k~~~~~~~----g~------~--~~i~~~~~~~~~~v~~ 249 (365)
T cd08278 183 KPRPGSSIAVFGAGAVGLAAVMAAKIAGC-TTIIAVDIVDSRLELAKEL----GA------T--HVINPKEEDLVAAIRE 249 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHc----CC------c--EEecCCCcCHHHHHHH
Confidence 367889999998876 7888888888764 3699999998887766532 11 1 111111100 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.. ...+|+|+...........+.+.|+++|+++.
T Consensus 250 ~~-~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~ 283 (365)
T cd08278 250 IT-GGGVDYALDTTGVPAVIEQAVDALAPRGTLAL 283 (365)
T ss_pred Hh-CCCCcEEEECCCCcHHHHHHHHHhccCCEEEE
Confidence 11 24689999876656677888999999999886
No 338
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=92.73 E-value=0.26 Score=46.23 Aligned_cols=97 Identities=23% Similarity=0.189 Sum_probs=61.8
Q ss_pred cCCCCCEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCC
Q 022372 148 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~ 222 (298)
.+++|++||-.|..+ |.++..||+..|. +++++-.+++..+.+++. +.. .-+.+...|..+ ...
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~~~~~l----GAd-----~vi~y~~~~~~~~v~~~t 207 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLELLKEL----GAD-----HVINYREEDFVEQVRELT 207 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcCC--cEEEEecCHHHHHHHHhc----CCC-----EEEcCCcccHHHHHHHHc
Confidence 478899999999544 7788999999753 677777677666655432 211 112222222211 122
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
....+|+|+..-.-+ ......+.|+++|+++..
T Consensus 208 ~g~gvDvv~D~vG~~-~~~~~l~~l~~~G~lv~i 240 (326)
T COG0604 208 GGKGVDVVLDTVGGD-TFAASLAALAPGGRLVSI 240 (326)
T ss_pred CCCCceEEEECCCHH-HHHHHHHHhccCCEEEEE
Confidence 224699998776664 444588899999999984
No 339
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=92.69 E-value=1.3 Score=41.30 Aligned_cols=98 Identities=23% Similarity=0.196 Sum_probs=63.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~ 223 (298)
.++++.+||-.|+|. |..+..+++..|. .+|++++.+++..+.+++ + +... -+.....+..+ ....
T Consensus 169 ~~~~g~~vlI~g~g~vG~~a~q~a~~~G~-~~v~~~~~~~~~~~~~~~-~---ga~~-----~i~~~~~~~~~~l~~~~~ 238 (351)
T cd08233 169 GFKPGDTALVLGAGPIGLLTILALKAAGA-SKIIVSEPSEARRELAEE-L---GATI-----VLDPTEVDVVAEVRKLTG 238 (351)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH-h---CCCE-----EECCCccCHHHHHHHHhC
Confidence 377889999998765 6777778887642 278999999988887754 2 2110 00101111000 0112
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+++-........+...+.|+++|+++.
T Consensus 239 ~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 270 (351)
T cd08233 239 GGGVDVSFDCAGVQATLDTAIDALRPRGTAVN 270 (351)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhccCCCEEEE
Confidence 23599999877665667888999999999886
No 340
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=92.56 E-value=2.3 Score=39.39 Aligned_cols=97 Identities=20% Similarity=0.220 Sum_probs=61.3
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC--CCCCCCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--KGWPEFA 225 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~--~~~~~~~ 225 (298)
..++.+||-.|+|. |..+..+++..|. .+|++++.+++..+.+++. +.. .-+.....+.. ......+
T Consensus 161 ~~~g~~vlV~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~~----g~~-----~~~~~~~~~~~~~~~~~~~~ 230 (341)
T cd05281 161 DVSGKSVLITGCGPIGLMAIAVAKAAGA-SLVIASDPNPYRLELAKKM----GAD-----VVINPREEDVVEVKSVTDGT 230 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHh----Ccc-----eeeCcccccHHHHHHHcCCC
Confidence 56788998888765 7788888887652 2688888777777665532 110 00000000110 0012224
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.+|+|+....-.+....+.+.|+++|+++.
T Consensus 231 ~vd~vld~~g~~~~~~~~~~~l~~~G~~v~ 260 (341)
T cd05281 231 GVDVVLEMSGNPKAIEQGLKALTPGGRVSI 260 (341)
T ss_pred CCCEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 699999876655677788999999999876
No 341
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=92.50 E-value=1.3 Score=40.73 Aligned_cols=95 Identities=22% Similarity=0.297 Sum_probs=62.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~ 225 (298)
.+.++.+||-.|+|. |..+..+++..| .+|++++.+++..+.+++ . +. .. ++........ ...+
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~-~---g~------~~--~~~~~~~~~~~~~~~ 224 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMG--FETVAITRSPDKRELARK-L---GA------DE--VVDSGAELDEQAAAG 224 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH-h---CC------cE--EeccCCcchHHhccC
Confidence 377889999999874 777777788765 579999999988777643 2 11 11 1111000000 0114
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
.+|+++...........+.+.|+++|+++..
T Consensus 225 ~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~ 255 (330)
T cd08245 225 GADVILVTVVSGAAAEAALGGLRRGGRIVLV 255 (330)
T ss_pred CCCEEEECCCcHHHHHHHHHhcccCCEEEEE
Confidence 6899987655556778889999999999873
No 342
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=92.48 E-value=0.41 Score=45.70 Aligned_cols=92 Identities=22% Similarity=0.150 Sum_probs=59.1
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHH-HHHHHHHHHHhccCCccCCCCEEEEEc-CCCCCCCCCCC
Q 022372 150 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPEL-VVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGWPEFAP 226 (298)
Q Consensus 150 ~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~-l~~A~~~~~~~~~~~~l~~~~v~~~~g-D~~~~~~~~~~ 226 (298)
++|++||-.|+|. |..+..+|+..| .+|++++.+++. .+.+++ .+. +. ++.. +........+.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~G--a~Vi~~~~~~~~~~~~a~~----lGa------~~--~i~~~~~~~v~~~~~~ 242 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFG--LRVTVISRSSEKEREAIDR----LGA------DS--FLVTTDSQKMKEAVGT 242 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcC--CeEEEEeCChHHhHHHHHh----CCC------cE--EEcCcCHHHHHHhhCC
Confidence 5789999999987 788888898876 478888877543 344422 221 11 1110 10000000124
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+++-........+...+.+++||+++.
T Consensus 243 ~D~vid~~G~~~~~~~~~~~l~~~G~iv~ 271 (375)
T PLN02178 243 MDFIIDTVSAEHALLPLFSLLKVSGKLVA 271 (375)
T ss_pred CcEEEECCCcHHHHHHHHHhhcCCCEEEE
Confidence 89998877666667788899999999986
No 343
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=92.42 E-value=1.1 Score=40.54 Aligned_cols=99 Identities=15% Similarity=0.219 Sum_probs=57.4
Q ss_pred CEEEEEcCCCcHHHHHHHHHc---C-CCcEEEEEeCCH--------------------------HHHHHHHHHHHHhccC
Q 022372 153 MHALDIGSGTGYLTACFALMV---G-PQGRAVGVEHIP--------------------------ELVVSSIQNIEKSAAA 202 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~---g-~~~~V~giD~s~--------------------------~~l~~A~~~~~~~~~~ 202 (298)
..|+|.|+-.|..+..++..+ + ++.++++.|.=+ ...+..++++.+.+
T Consensus 76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g-- 153 (248)
T PF05711_consen 76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG-- 153 (248)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT--
T ss_pred eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC--
Confidence 479999999998776665443 2 345788877321 12333344443333
Q ss_pred CccCCCCEEEEEcCCCCCCCC--CCCccEEEECCCCc----hhHHHHHhccccCcEEEE
Q 022372 203 PLLKEGSLSVHVGDGRKGWPE--FAPYDAIHVGAAAP----EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 203 ~~l~~~~v~~~~gD~~~~~~~--~~~fD~Ii~~~~~~----~l~~~l~~~LkpGG~Lvi 255 (298)
+..++++++.|...+..+. ..++-++..+..+- ..++.++..|.|||++++
T Consensus 154 --l~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYesT~~aLe~lyprl~~GGiIi~ 210 (248)
T PF05711_consen 154 --LLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYESTKDALEFLYPRLSPGGIIIF 210 (248)
T ss_dssp --TSSTTEEEEES-HHHHCCC-TT--EEEEEE---SHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred --CCcccEEEECCcchhhhccCCCccEEEEEEeccchHHHHHHHHHHHhhcCCCeEEEE
Confidence 2237899999997654442 24677778777763 455788899999999997
No 344
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=92.12 E-value=1.7 Score=40.79 Aligned_cols=95 Identities=20% Similarity=0.264 Sum_probs=60.9
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------CC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------GW 221 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~~ 221 (298)
+.++.+||-.|+|. |..+..+++..|. ..+++++.+++..+.+++ + +.. .++..+... ..
T Consensus 185 ~~~g~~VlI~g~g~vG~~~~~lak~~G~-~~vi~~~~s~~~~~~~~~-~---g~~--------~v~~~~~~~~~~~l~~~ 251 (367)
T cd08263 185 VRPGETVAVIGVGGVGSSAIQLAKAFGA-SPIIAVDVRDEKLAKAKE-L---GAT--------HTVNAAKEDAVAAIREI 251 (367)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-h---CCc--------eEecCCcccHHHHHHHH
Confidence 56788998888764 7777788887652 248999988887776643 1 111 111111100 01
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
.....+|+|+....-....+...+.|+++|+++..
T Consensus 252 ~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~ 286 (367)
T cd08263 252 TGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVV 286 (367)
T ss_pred hCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEE
Confidence 12246999997655444677889999999998874
No 345
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.08 E-value=1.5 Score=40.69 Aligned_cols=87 Identities=16% Similarity=0.170 Sum_probs=56.4
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE-cCCCCCCCCCCCcc
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GDGRKGWPEFAPYD 228 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~-gD~~~~~~~~~~fD 228 (298)
.+.+|+-+|.|. |...+..++..| .+|+.+|.+++..+.+++ .+ .++.. .+..+ ....+|
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~G--a~V~v~~r~~~~~~~~~~----~G---------~~~~~~~~l~~---~l~~aD 212 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALG--ANVTVGARKSAHLARITE----MG---------LSPFHLSELAE---EVGKID 212 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHHH----cC---------CeeecHHHHHH---HhCCCC
Confidence 578999999987 555555555554 589999999876555432 11 11111 11111 113689
Q ss_pred EEEECCCCchhHHHHHhccccCcEEEE
Q 022372 229 AIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 229 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+...+..-+.++..+.+++|+.++=
T Consensus 213 iVI~t~p~~~i~~~~l~~~~~g~vIID 239 (296)
T PRK08306 213 IIFNTIPALVLTKEVLSKMPPEALIID 239 (296)
T ss_pred EEEECCChhhhhHHHHHcCCCCcEEEE
Confidence 999987655566788889999887764
No 346
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=92.08 E-value=0.9 Score=41.05 Aligned_cols=101 Identities=23% Similarity=0.257 Sum_probs=55.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccC-CccCCCCEEEEEcCCCCCC---CCCCC
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAA-PLLKEGSLSVHVGDGRKGW---PEFAP 226 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~-~~l~~~~v~~~~gD~~~~~---~~~~~ 226 (298)
...+|||+|+|+|..++.+|...+ ..|+..|... .++..+.+...+... ..++ ..+.+..-+..... .-...
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~--~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g-~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLG--AEVVLTDLPK-VVENLKFNRDKNNIALNQLG-GSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhc--ceeccCCchh-hHHHHHHhhhhhhhhhhhcC-CceeEEEEecCCcccHhhccCC
Confidence 345799999999988888888654 5777777544 333333332222111 0011 13333322222111 11123
Q ss_pred -ccEEEECCCC------chhHHHHHhccccCcEEEE
Q 022372 227 -YDAIHVGAAA------PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 -fD~Ii~~~~~------~~l~~~l~~~LkpGG~Lvi 255 (298)
||+|+...+. +.+..-+...|..+|.+++
T Consensus 162 ~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l 197 (248)
T KOG2793|consen 162 PFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFL 197 (248)
T ss_pred cccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEE
Confidence 8888777654 4455677778888885444
No 347
>PTZ00357 methyltransferase; Provisional
Probab=91.95 E-value=1.1 Score=46.01 Aligned_cols=99 Identities=23% Similarity=0.201 Sum_probs=61.4
Q ss_pred EEEEEcCCCcHHHHHH---HHHcCCCcEEEEEeCCHHHHHHHHHHH---HHhccCCccCCCCEEEEEcCCCCCCCC----
Q 022372 154 HALDIGSGTGYLTACF---ALMVGPQGRAVGVEHIPELVVSSIQNI---EKSAAAPLLKEGSLSVHVGDGRKGWPE---- 223 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~L---a~~~g~~~~V~giD~s~~~l~~A~~~~---~~~~~~~~l~~~~v~~~~gD~~~~~~~---- 223 (298)
.|+.+|+|.|-+.... ++..+-..++++||-++..+.....+. ..|........+.|+++..|.+....+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 5899999999765443 333344568999999976554444432 223110001125699999999875322
Q ss_pred -------CCCccEEEECC--------CCchhHHHHHhcccc----CcE
Q 022372 224 -------FAPYDAIHVGA--------AAPEIPQALIDQLKP----GGR 252 (298)
Q Consensus 224 -------~~~fD~Ii~~~--------~~~~l~~~l~~~Lkp----GG~ 252 (298)
.+++|+|++-. -.++-++.+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 13689997632 124555677778887 776
No 348
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=91.84 E-value=3.1 Score=38.51 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=61.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC---CCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR---KGWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~---~~~~~ 223 (298)
.+.++.+||-.|+|. |..+..+++..|. .++++++.++...+.+++. +.. .-+.....+.. .....
T Consensus 163 ~~~~g~~vlI~g~g~~g~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~----g~~-----~~v~~~~~~~~~~i~~~~~ 232 (345)
T cd08286 163 KVKPGDTVAIVGAGPVGLAALLTAQLYSP-SKIIMVDLDDNRLEVAKKL----GAT-----HTVNSAKGDAIEQVLELTD 232 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHHh----CCC-----ceeccccccHHHHHHHHhC
Confidence 367889998888765 6677778887643 4688899888776666531 211 00111111100 00112
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+++.........+.+.+.|+++|+++.
T Consensus 233 ~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~ 264 (345)
T cd08286 233 GRGVDVVIEAVGIPATFELCQELVAPGGHIAN 264 (345)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhccCCcEEEE
Confidence 24699998765545566788899999999885
No 349
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=91.65 E-value=3.1 Score=38.62 Aligned_cols=93 Identities=19% Similarity=0.232 Sum_probs=62.1
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------CC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------GW 221 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~~ 221 (298)
+.++.+||-.|+|. |..+..+|+..|. .+|+.++.+++..+.+++ + +. . .++...... ..
T Consensus 173 ~~~~~~vlI~g~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~---g~------~--~~~~~~~~~~~~~~~~~ 239 (350)
T cd08240 173 LVADEPVVIIGAGGLGLMALALLKALGP-ANIIVVDIDEAKLEAAKA-A---GA------D--VVVNGSDPDAAKRIIKA 239 (350)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-h---CC------c--EEecCCCccHHHHHHHH
Confidence 45788999998875 7788888888653 378899988887777643 2 11 1 111111000 01
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.. +.+|+++.............+.|+++|+++.
T Consensus 240 ~~-~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 240 AG-GGVDAVIDFVNNSATASLAFDILAKGGKLVL 272 (350)
T ss_pred hC-CCCcEEEECCCCHHHHHHHHHHhhcCCeEEE
Confidence 12 2689999776656677888999999999986
No 350
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=91.62 E-value=3.1 Score=38.58 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=60.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~~ 223 (298)
...++.+||-.|+|. |..+..+++..|. ..|++++.+++..+.+++. +.. .-+.....+..+ ....
T Consensus 158 ~~~~g~~vlI~~~g~vg~~a~~la~~~G~-~~v~~~~~~~~~~~~~~~~----g~~-----~~v~~~~~~~~~~l~~~~~ 227 (340)
T TIGR00692 158 GPISGKSVLVTGAGPIGLMAIAVAKASGA-YPVIVSDPNEYRLELAKKM----GAT-----YVVNPFKEDVVKEVADLTD 227 (340)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHh----CCc-----EEEcccccCHHHHHHHhcC
Confidence 356788988887764 6777778887652 2488888887776665432 110 001111111100 1122
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+++.............+.|+++|+++.
T Consensus 228 ~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~ 259 (340)
T TIGR00692 228 GEGVDVFLEMSGAPKALEQGLQAVTPGGRVSL 259 (340)
T ss_pred CCCCCEEEECCCCHHHHHHHHHhhcCCCEEEE
Confidence 34699999875555677888999999999876
No 351
>PRK10083 putative oxidoreductase; Provisional
Probab=91.59 E-value=0.58 Score=43.30 Aligned_cols=98 Identities=15% Similarity=0.088 Sum_probs=60.5
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHH-cCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALM-VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EF 224 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~-~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~ 224 (298)
.+++|.+||-.|+|. |..+..+++. .|. ..+++++.+++..+.+++. +....+. ....+...... ..
T Consensus 157 ~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~-~~v~~~~~~~~~~~~~~~~----Ga~~~i~-----~~~~~~~~~~~~~g 226 (339)
T PRK10083 157 GPTEQDVALIYGAGPVGLTIVQVLKGVYNV-KAVIVADRIDERLALAKES----GADWVIN-----NAQEPLGEALEEKG 226 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHh----CCcEEec-----CccccHHHHHhcCC
Confidence 477899999999765 6676777774 343 3688899999888777542 2110011 00001001111 11
Q ss_pred CCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 225 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
..+|+++.............+.|+++|+++.
T Consensus 227 ~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 227 IKPTLIIDAACHPSILEEAVTLASPAARIVL 257 (339)
T ss_pred CCCCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 2356887765545567888899999999987
No 352
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=91.44 E-value=0.97 Score=42.93 Aligned_cols=76 Identities=26% Similarity=0.368 Sum_probs=51.3
Q ss_pred CccccC-CCccChHHHHHH--------HHHHHHccCCC-CCEEEEEcCCCcHHHHHHHHHc---CC----CcEEEEEeCC
Q 022372 123 PMAIGY-NATISAPHMHAT--------CLQLLEENLKP-GMHALDIGSGTGYLTACFALMV---GP----QGRAVGVEHI 185 (298)
Q Consensus 123 ~~~~g~-~~~is~p~~~~~--------~l~~L~~~l~~-g~~VLDiG~GsG~~t~~La~~~---g~----~~~V~giD~s 185 (298)
..++|. |-.+++|.+... +++.+.....| .-.++|+|+|.|.++.-+.+.. .| ..++.-+|.|
T Consensus 39 ~~~~G~~GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s 118 (370)
T COG1565 39 AVKIGRKGDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPS 118 (370)
T ss_pred chhccccCCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecC
Confidence 444543 456667764433 33333322233 4579999999999988776654 22 3689999999
Q ss_pred HHHHHHHHHHHHH
Q 022372 186 PELVVSSIQNIEK 198 (298)
Q Consensus 186 ~~~l~~A~~~~~~ 198 (298)
+++.+.-+++++.
T Consensus 119 ~~L~~~Qk~~L~~ 131 (370)
T COG1565 119 PELRARQKETLKA 131 (370)
T ss_pred HHHHHHHHHHHhc
Confidence 9999998888765
No 353
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=91.42 E-value=3.2 Score=38.94 Aligned_cols=96 Identities=18% Similarity=0.232 Sum_probs=62.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.+.++.+||-.|+|. |..+..+++..|. .+|++++.+++..+.+++ + +.. .++...... .
T Consensus 179 ~~~~g~~vLI~g~g~vG~a~i~lak~~G~-~~Vi~~~~~~~~~~~~~~-~---g~~--------~vv~~~~~~~~~~l~~ 245 (363)
T cd08279 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGA-SRIIAVDPVPEKLELARR-F---GAT--------HTVNASEDDAVEAVRD 245 (363)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEEcCCHHHHHHHHH-h---CCe--------EEeCCCCccHHHHHHH
Confidence 467889999998764 7777888887652 248999888887766632 1 111 111111100 1
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
..+...+|+++....-........+.|+++|+++..
T Consensus 246 ~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~ 281 (363)
T cd08279 246 LTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVV 281 (363)
T ss_pred HcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEE
Confidence 112356999987665456678889999999999863
No 354
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=91.35 E-value=2 Score=40.51 Aligned_cols=97 Identities=15% Similarity=0.182 Sum_probs=62.5
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc--CCC---CCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGR---KGW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g--D~~---~~~ 221 (298)
.++++.+||-.|+|. |..+..+++..|. ..+++++.+++..+.+++ + +.. ..+..... +.. ...
T Consensus 180 ~~~~g~~vlI~g~g~vG~~a~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~---g~~-----~~v~~~~~~~~~~~~l~~~ 249 (365)
T cd05279 180 KVTPGSTCAVFGLGGVGLSVIMGCKAAGA-SRIIAVDINKDKFEKAKQ-L---GAT-----ECINPRDQDKPIVEVLTEM 249 (365)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHH-h---CCC-----eecccccccchHHHHHHHH
Confidence 477899999998876 7777888888653 358889988888777743 2 111 00111111 100 001
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccc-cCcEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLK-PGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~Lk-pGG~Lvi 255 (298)
.. +.+|+++.............+.|+ ++|+++.
T Consensus 250 ~~-~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~ 283 (365)
T cd05279 250 TD-GGVDYAFEVIGSADTLKQALDATRLGGGTSVV 283 (365)
T ss_pred hC-CCCcEEEECCCCHHHHHHHHHHhccCCCEEEE
Confidence 12 468999876554456677888999 9999886
No 355
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=91.31 E-value=0.34 Score=46.17 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=35.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHH
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQ 194 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~ 194 (298)
+-+.|.|+|+|.||++..++-..+ -.|++||-+....++|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~--lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYG--LSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccC--ceEEEeccchHHHHHHHH
Confidence 446899999999999999987654 699999999888777754
No 356
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.27 E-value=0.66 Score=44.97 Aligned_cols=87 Identities=17% Similarity=0.111 Sum_probs=59.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
...|++|+-+|+|. |...+..++..| .+|+++|.++.....|+. .+. .+. +..+.. ...
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~G--a~ViV~d~dp~r~~~A~~----~G~---------~v~--~leeal---~~a 251 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMG--ARVIVTEVDPIRALEAAM----DGF---------RVM--TMEEAA---KIG 251 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCc--CEEEEEeCChhhHHHHHh----cCC---------EeC--CHHHHH---hcC
Confidence 35789999999998 877777777665 589999999865444432 111 111 111111 246
Q ss_pred cEEEECCCCchhH-HHHHhccccCcEEEE
Q 022372 228 DAIHVGAAAPEIP-QALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~~~~l~-~~l~~~LkpGG~Lvi 255 (298)
|+++......++. .+....+|+|++++.
T Consensus 252 DVVItaTG~~~vI~~~~~~~mK~GailiN 280 (406)
T TIGR00936 252 DIFITATGNKDVIRGEHFENMKDGAIVAN 280 (406)
T ss_pred CEEEECCCCHHHHHHHHHhcCCCCcEEEE
Confidence 9988877777765 458899999998876
No 357
>PLN02494 adenosylhomocysteinase
Probab=91.16 E-value=0.96 Score=44.64 Aligned_cols=90 Identities=17% Similarity=0.146 Sum_probs=61.2
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.-.|++|+-+|+|. |...+..++.+| .+|+.+|.++.....+... +. .+. +..+.. ...
T Consensus 251 ~LaGKtVvViGyG~IGr~vA~~aka~G--a~VIV~e~dp~r~~eA~~~----G~---------~vv--~leEal---~~A 310 (477)
T PLN02494 251 MIAGKVAVICGYGDVGKGCAAAMKAAG--ARVIVTEIDPICALQALME----GY---------QVL--TLEDVV---SEA 310 (477)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhhHHHHhc----CC---------eec--cHHHHH---hhC
Confidence 35689999999998 777777777665 5899999998654444221 11 111 111111 247
Q ss_pred cEEEECCCCchh-HHHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAPEI-PQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~~l-~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|+|+......++ ....++.+|+||+++- ++.
T Consensus 311 DVVI~tTGt~~vI~~e~L~~MK~GAiLiN-vGr 342 (477)
T PLN02494 311 DIFVTTTGNKDIIMVDHMRKMKNNAIVCN-IGH 342 (477)
T ss_pred CEEEECCCCccchHHHHHhcCCCCCEEEE-cCC
Confidence 999988777775 4888999999999887 443
No 358
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=91.12 E-value=0.68 Score=45.18 Aligned_cols=86 Identities=15% Similarity=0.108 Sum_probs=58.3
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 150 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
-.|++|+-+|+|. |...+..++..| .+|+.+|.++.....+... +. ++. +..+.. ..+|
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~G--a~ViV~d~dp~ra~~A~~~----G~---------~v~--~l~eal---~~aD 269 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLG--ARVIVTEVDPICALQAAMD----GF---------RVM--TMEEAA---ELGD 269 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCC--CEEEEEcCCchhhHHHHhc----CC---------Eec--CHHHHH---hCCC
Confidence 3789999999997 777777777655 5899999998765444221 11 111 111111 2579
Q ss_pred EEEECCCCchhH-HHHHhccccCcEEEE
Q 022372 229 AIHVGAAAPEIP-QALIDQLKPGGRMVI 255 (298)
Q Consensus 229 ~Ii~~~~~~~l~-~~l~~~LkpGG~Lvi 255 (298)
+|+......++. ....+.+|+|++++.
T Consensus 270 VVI~aTG~~~vI~~~~~~~mK~GailiN 297 (425)
T PRK05476 270 IFVTATGNKDVITAEHMEAMKDGAILAN 297 (425)
T ss_pred EEEECCCCHHHHHHHHHhcCCCCCEEEE
Confidence 998887766666 478899999998876
No 359
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=90.89 E-value=1.9 Score=36.45 Aligned_cols=98 Identities=19% Similarity=0.189 Sum_probs=60.6
Q ss_pred EEcCCCcHHHHHHHHHcCCCcEEEE--EeCCHHHHHHH---HHHHHHhccCCccCCCCEEEEE-cCCCCCC--C--CCCC
Q 022372 157 DIGSGTGYLTACFALMVGPQGRAVG--VEHIPELVVSS---IQNIEKSAAAPLLKEGSLSVHV-GDGRKGW--P--EFAP 226 (298)
Q Consensus 157 DiG~GsG~~t~~La~~~g~~~~V~g--iD~s~~~l~~A---~~~~~~~~~~~~l~~~~v~~~~-gD~~~~~--~--~~~~ 226 (298)
-||=|.=.++..|++..+....+++ .|..++..+.- .+++... ....+.++. -|+.... . ...+
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L------~~~g~~V~~~VDat~l~~~~~~~~~~ 75 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEEL------RELGVTVLHGVDATKLHKHFRLKNQR 75 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHH------hhcCCccccCCCCCcccccccccCCc
Confidence 4677777788999988764445555 56555555433 3455442 113333332 3444321 1 3468
Q ss_pred ccEEEECCCCch-------------------hHHHHHhccccCcEEEEEECCC
Q 022372 227 YDAIHVGAAAPE-------------------IPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 227 fD~Ii~~~~~~~-------------------l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
||.|+-+.+... .++.+.+.|+++|.+.+++-++
T Consensus 76 FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 76 FDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred CCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 999999987422 2356778999999999998765
No 360
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=90.83 E-value=2 Score=39.71 Aligned_cols=100 Identities=22% Similarity=0.315 Sum_probs=61.9
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.++++.+||..|+|. |..+..+|+..|- ..+++++.+++..+.+++ .+....+...+.. ..... .......
T Consensus 156 ~~~~~~~vlI~g~g~~g~~~~~lA~~~G~-~~v~~~~~~~~~~~~l~~----~g~~~~~~~~~~~--~~~~~-~~~~~~~ 227 (343)
T cd08236 156 GITLGDTVVVIGAGTIGLLAIQWLKILGA-KRVIAVDIDDEKLAVARE----LGADDTINPKEED--VEKVR-ELTEGRG 227 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHH----cCCCEEecCcccc--HHHHH-HHhCCCC
Confidence 477889999998766 7788888887652 248999888877666532 1111000000000 00000 1122235
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|+++...........+.+.|+++|+++.
T Consensus 228 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~ 256 (343)
T cd08236 228 ADLVIEAAGSPATIEQALALARPGGKVVL 256 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence 99999875555677888999999999876
No 361
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=90.67 E-value=0.5 Score=45.21 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=56.7
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
++.+|+-+|+|. |..++..++..| .+|+.+|.+++..+.+...+. ..+.....+.......-..+|+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lG--a~V~v~d~~~~~~~~l~~~~g----------~~v~~~~~~~~~l~~~l~~aDv 233 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLG--ATVTILDINIDRLRQLDAEFG----------GRIHTRYSNAYEIEDAVKRADL 233 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcC----------ceeEeccCCHHHHHHHHccCCE
Confidence 346799999986 777777777765 479999999887666544321 1111111110000001135899
Q ss_pred EEECCCC-----ch-hHHHHHhccccCcEEEE
Q 022372 230 IHVGAAA-----PE-IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 230 Ii~~~~~-----~~-l~~~l~~~LkpGG~Lvi 255 (298)
|+..... +. +.++..+.+|+|++++-
T Consensus 234 VI~a~~~~g~~~p~lit~~~l~~mk~g~vIvD 265 (370)
T TIGR00518 234 LIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVD 265 (370)
T ss_pred EEEccccCCCCCCcCcCHHHHhcCCCCCEEEE
Confidence 9887522 22 34778888999988775
No 362
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=90.45 E-value=2.7 Score=38.77 Aligned_cols=94 Identities=22% Similarity=0.239 Sum_probs=61.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC-----CCCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR-----KGWP 222 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~-----~~~~ 222 (298)
+.++.+||-.|+|+ |..+..+++..+. .+|++++.+++..+.+++ .+.. .++..+.. ....
T Consensus 165 ~~~~~~vlI~g~~~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~----~g~~--------~~~~~~~~~~~~i~~~~ 231 (340)
T cd05284 165 LDPGSTVVVIGVGGLGHIAVQILRALTP-ATVIAVDRSEEALKLAER----LGAD--------HVLNASDDVVEEVRELT 231 (340)
T ss_pred CCCCCEEEEEcCcHHHHHHHHHHHHhCC-CcEEEEeCCHHHHHHHHH----hCCc--------EEEcCCccHHHHHHHHh
Confidence 66789999999765 6666777777642 478889888877666532 2211 11111100 0112
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
....+|+|+....-....+...+.|+++|+++.
T Consensus 232 ~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~ 264 (340)
T cd05284 232 GGRGADAVIDFVGSDETLALAAKLLAKGGRYVI 264 (340)
T ss_pred CCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEE
Confidence 224699999766655667888999999999986
No 363
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.35 E-value=0.58 Score=41.80 Aligned_cols=88 Identities=17% Similarity=0.178 Sum_probs=61.6
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCC----C----cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC----
Q 022372 153 MHALDIGSGTGYLTACFALMVGP----Q----GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---- 220 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~----~----~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~---- 220 (298)
.+|+|+.+..|..+..|++.+.. . ..+++||+.+- -..+-|.-+++|....
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------------aPI~GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------------APIEGVIQLQGDITSASTAE 105 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------------CccCceEEeecccCCHhHHH
Confidence 58999999999999999987633 1 13899998652 1225677788887752
Q ss_pred ----CCCCCCccEEEECCCC-----chhH------------HHHHhccccCcEEEEEE
Q 022372 221 ----WPEFAPYDAIHVGAAA-----PEIP------------QALIDQLKPGGRMVIPV 257 (298)
Q Consensus 221 ----~~~~~~fD~Ii~~~~~-----~~l~------------~~l~~~LkpGG~Lvi~v 257 (298)
.+..++.|+|+|+++- +++- .-....|||||.+|.-+
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhh
Confidence 2334688999999864 2222 11235799999999855
No 364
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=90.34 E-value=0.77 Score=42.85 Aligned_cols=116 Identities=14% Similarity=0.122 Sum_probs=74.1
Q ss_pred CCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 152 GMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 152 g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
..+|.-+|-|. |..++.+|-.++ +.|+-+|++.+.++.....+. .+++............-...|++
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~f~----------~rv~~~~st~~~iee~v~~aDlv 235 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDLFG----------GRVHTLYSTPSNIEEAVKKADLV 235 (371)
T ss_pred CccEEEECCccccchHHHHHhccC--CeeEEEecCHHHHhhhhHhhC----------ceeEEEEcCHHHHHHHhhhccEE
Confidence 35788899997 899999888665 799999999988877655432 46777766554432233467887
Q ss_pred EECCC-----Cch-hHHHHHhccccCcEEEEEECC-C-ceeEEEEEEcCCCCeEEEE
Q 022372 231 HVGAA-----APE-IPQALIDQLKPGGRMVIPVGN-I-FQDLKVVDKNQDGSLSIWS 279 (298)
Q Consensus 231 i~~~~-----~~~-l~~~l~~~LkpGG~Lvi~v~~-~-~q~~~~~~~~~~g~~~~~~ 279 (298)
+..-- .+. +.+++.+++|||++++=.--+ + .-+-...+...+-.+..+.
T Consensus 236 IgaVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDqGGc~Et~~~TTh~~PtY~~~g 292 (371)
T COG0686 236 IGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFETSHPTTHDDPTYEVDG 292 (371)
T ss_pred EEEEEecCCCCceehhHHHHHhcCCCcEEEEEEEcCCCceeccccccCCCCceeecC
Confidence 54322 233 458899999999998742212 1 1222344444455555543
No 365
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.23 E-value=2.4 Score=39.66 Aligned_cols=102 Identities=20% Similarity=0.195 Sum_probs=68.8
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-C
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-D 216 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g-D 216 (298)
..+..... ++||.++--+|.|. |...+.-++..|. ++++|+|++++..+.|++- +. .++++. |
T Consensus 182 GAa~~~Ak--v~~GstvAVfGLG~VGLav~~Gaka~GA-srIIgvDiN~~Kf~~ak~f----Ga--------Te~iNp~d 246 (375)
T KOG0022|consen 182 GAAWNTAK--VEPGSTVAVFGLGGVGLAVAMGAKAAGA-SRIIGVDINPDKFEKAKEF----GA--------TEFINPKD 246 (375)
T ss_pred hhhhhhcc--cCCCCEEEEEecchHHHHHHHhHHhcCc-ccEEEEecCHHHHHHHHhc----Cc--------ceecChhh
Confidence 33444444 89999999999998 5444555666544 7999999999999998753 21 122221 1
Q ss_pred CCCCC------CCCCCccEEEECCCCchhHHHHHhccccC-cEEEE
Q 022372 217 GRKGW------PEFAPYDAIHVGAAAPEIPQALIDQLKPG-GRMVI 255 (298)
Q Consensus 217 ~~~~~------~~~~~fD~Ii~~~~~~~l~~~l~~~LkpG-G~Lvi 255 (298)
..+.. ..++.+|.-+-.....+++++.....+.| |.-++
T Consensus 247 ~~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~ 292 (375)
T KOG0022|consen 247 LKKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVV 292 (375)
T ss_pred ccccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEE
Confidence 11100 11267888887777778888888888888 77666
No 366
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.12 E-value=5.8 Score=39.50 Aligned_cols=100 Identities=10% Similarity=0.074 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcC---CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCC
Q 022372 133 SAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVG---PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS 209 (298)
Q Consensus 133 s~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g---~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~ 209 (298)
+..++...+.+.+.+...|+..|.|..||+|.+.....+..+ ....++|-|..+.+...++.++.-++.. .+.
T Consensus 199 Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~----~~t 274 (501)
T TIGR00497 199 TPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID----YAN 274 (501)
T ss_pred CcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC----ccc
Confidence 334444444454442233667999999999987765443322 1246899999999999999887554321 122
Q ss_pred EEEEEcCCCCC--CCCCCCccEEEECCCC
Q 022372 210 LSVHVGDGRKG--WPEFAPYDAIHVGAAA 236 (298)
Q Consensus 210 v~~~~gD~~~~--~~~~~~fD~Ii~~~~~ 236 (298)
.....+|.... +....+||.|+++++.
T Consensus 275 ~~~~~~dtl~~~d~~~~~~~D~v~~NpPf 303 (501)
T TIGR00497 275 FNIINADTLTTKEWENENGFEVVVSNPPY 303 (501)
T ss_pred cCcccCCcCCCccccccccCCEEeecCCc
Confidence 33334454432 1123468888877753
No 367
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=90.07 E-value=0.59 Score=46.11 Aligned_cols=85 Identities=20% Similarity=0.299 Sum_probs=50.7
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHH----HHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCc
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPE----LVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPY 227 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~----~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~f 227 (298)
..|+|..+|.|.+++.|... + |...-..+. -+...- ..|+ +-+. .|.-+.+ .-..+|
T Consensus 367 RNVMDMnAg~GGFAAAL~~~--~---VWVMNVVP~~~~ntL~vIy----dRGL--------IG~y-hDWCE~fsTYPRTY 428 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD--P---VWVMNVVPVSGPNTLPVIY----DRGL--------IGVY-HDWCEAFSTYPRTY 428 (506)
T ss_pred eeeeeecccccHHHHHhccC--C---ceEEEecccCCCCcchhhh----hccc--------chhc-cchhhccCCCCcch
Confidence 37999999999999998764 2 444333332 111111 1111 1111 1211211 123689
Q ss_pred cEEEECCCCc---------hhHHHHHhccccCcEEEE
Q 022372 228 DAIHVGAAAP---------EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 228 D~Ii~~~~~~---------~l~~~l~~~LkpGG~Lvi 255 (298)
|+|+++..+. .+.-++-|.|+|||.+++
T Consensus 429 DLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 429 DLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVII 465 (506)
T ss_pred hheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEE
Confidence 9999987653 455678899999999998
No 368
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=90.06 E-value=0.9 Score=40.88 Aligned_cols=46 Identities=22% Similarity=0.215 Sum_probs=37.2
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCC-------cEEEEEeCCHHHHHHHHHHHHH
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQ-------GRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~-------~~V~giD~s~~~l~~A~~~~~~ 198 (298)
-+|+|+|+|+|.++..+.+.+... .+++.+|.|+.+.+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 699999999999999988876432 4899999999999888888755
No 369
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=90.00 E-value=1.7 Score=33.64 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=58.2
Q ss_pred CCCcHHHHHHHHHcCCCc-EEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CCCCCccEEEECC
Q 022372 160 SGTGYLTACFALMVGPQG-RAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAPYDAIHVGA 234 (298)
Q Consensus 160 ~GsG~~t~~La~~~g~~~-~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----~~~~~fD~Ii~~~ 234 (298)
||.|..+..+++.+.... .|+.+|.+++.++.+++. .+.++.||..+.. ..-...|.+++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------------GVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------------TSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------------ccccccccchhhhHHhhcCccccCEEEEcc
Confidence 455677777777664445 899999999998887643 3578999988621 1224688888776
Q ss_pred CCchhH---HHHHhccccCcEEEEEECCC
Q 022372 235 AAPEIP---QALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 235 ~~~~l~---~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.-...- ....+.+.|...++.-+.+.
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 654322 33456667888888876653
No 370
>PLN02702 L-idonate 5-dehydrogenase
Probab=89.96 E-value=4.3 Score=38.08 Aligned_cols=97 Identities=20% Similarity=0.204 Sum_probs=62.1
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE---cCCCCC---
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV---GDGRKG--- 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~---gD~~~~--- 220 (298)
.+.++.+||-.|+|. |..+..+++..|. ..+++++.+++..+.+++. +. +.+.... .+....
T Consensus 178 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~----g~------~~~~~~~~~~~~~~~~~~~ 246 (364)
T PLN02702 178 NIGPETNVLVMGAGPIGLVTMLAARAFGA-PRIVIVDVDDERLSVAKQL----GA------DEIVLVSTNIEDVESEVEE 246 (364)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHh----CC------CEEEecCcccccHHHHHHH
Confidence 467889999998764 7777888887653 3588999888777766542 21 1111110 011000
Q ss_pred C--CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 W--PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~--~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
. ...+.+|+|+....-........+.|+++|+++.
T Consensus 247 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~ 283 (364)
T PLN02702 247 IQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCL 283 (364)
T ss_pred HhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 0 1124689998876545667888999999999775
No 371
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=89.81 E-value=3.6 Score=37.95 Aligned_cols=95 Identities=22% Similarity=0.307 Sum_probs=62.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcE-EEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~-V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+++|.+||-.|+|. |..+..+++..+ .+ +++++.+++..+.+++ + +.. .++..+...
T Consensus 162 ~~~~g~~VlV~g~g~vg~~~~~la~~~g--~~~v~~~~~s~~~~~~~~~-~---g~~--------~~~~~~~~~~~~~i~ 227 (343)
T cd08235 162 GIKPGDTVLVIGAGPIGLLHAMLAKASG--ARKVIVSDLNEFRLEFAKK-L---GAD--------YTIDAAEEDLVEKVR 227 (343)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH-h---CCc--------EEecCCccCHHHHHH
Confidence 378899999998763 777777888765 35 8888888887776642 1 111 111111000
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
.......+|+|+.............+.|+++|+++..
T Consensus 228 ~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~ 264 (343)
T cd08235 228 ELTDGRGADVVIVATGSPEAQAQALELVRKGGRILFF 264 (343)
T ss_pred HHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEE
Confidence 0112245899997766555777888999999999863
No 372
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=89.71 E-value=0.9 Score=43.53 Aligned_cols=119 Identities=20% Similarity=0.214 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhcc-CCccC--CCCEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAA-APLLK--EGSLS 211 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~-~~~l~--~~~v~ 211 (298)
+...+.+.+.+. +++++...|+|+|.|.+...+|...+ ...-+|+|+.+...+.|..+.....- ...++ ...+.
T Consensus 178 ~~ql~si~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~-~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~ 254 (419)
T KOG3924|consen 178 LEQLRSIVDELK--LGPADVFMDLGSGVGQLVCFVAAYAG-CKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIE 254 (419)
T ss_pred HHHHHHHHHHhc--cCCCCcccCCCcccchhhHHHHHhhc-cccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCcee
Confidence 344555666666 89999999999999999988887753 35678888877666555443321110 00011 24567
Q ss_pred EEEcCCCCCCC---CCCCccEEEECCCCc--hhH---HHHHhccccCcEEEEE
Q 022372 212 VHVGDGRKGWP---EFAPYDAIHVGAAAP--EIP---QALIDQLKPGGRMVIP 256 (298)
Q Consensus 212 ~~~gD~~~~~~---~~~~fD~Ii~~~~~~--~l~---~~l~~~LkpGG~Lvi~ 256 (298)
.++++....-. -....++|+++...- ++. .+++..+++|-+++=+
T Consensus 255 ~i~gsf~~~~~v~eI~~eatvi~vNN~~Fdp~L~lr~~eil~~ck~gtrIiS~ 307 (419)
T KOG3924|consen 255 TIHGSFLDPKRVTEIQTEATVIFVNNVAFDPELKLRSKEILQKCKDGTRIISS 307 (419)
T ss_pred ecccccCCHHHHHHHhhcceEEEEecccCCHHHHHhhHHHHhhCCCcceEecc
Confidence 77777654211 013468898887752 222 4888899999998863
No 373
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=89.70 E-value=3.1 Score=38.56 Aligned_cols=93 Identities=22% Similarity=0.318 Sum_probs=60.5
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC-CCCCCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG-WPEFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~-~~~~~~ 226 (298)
+.++.+||-.|+|. |..+..+++..+ .+++.++.+++..+.+++ + +. .. ++....... ....+.
T Consensus 167 ~~~g~~vlV~g~g~vG~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~-~---g~------~~--vi~~~~~~~~~~~~~~ 232 (337)
T cd05283 167 VGPGKRVGVVGIGGLGHLAVKFAKALG--AEVTAFSRSPSKKEDALK-L---GA------DE--FIATKDPEAMKKAAGS 232 (337)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-c---CC------cE--EecCcchhhhhhccCC
Confidence 67888998888765 777777787764 589999998887777643 2 11 11 111000000 001256
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+|.++.............+.|+++|+++.
T Consensus 233 ~d~v~~~~g~~~~~~~~~~~l~~~G~~v~ 261 (337)
T cd05283 233 LDLIIDTVSASHDLDPYLSLLKPGGTLVL 261 (337)
T ss_pred ceEEEECCCCcchHHHHHHHhcCCCEEEE
Confidence 89999766655456778899999999886
No 374
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=89.61 E-value=1.1 Score=41.17 Aligned_cols=78 Identities=19% Similarity=0.184 Sum_probs=58.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC--CCcc
Q 022372 151 PGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--APYD 228 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~--~~fD 228 (298)
.|..|+-+| -.-..+..++-. +-..++..+|+++.++....+-.++.+ .+|++...-|.++.+|+. ..||
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt-~mpk~iaVvDIDERli~fi~k~aee~g------~~~ie~~~~Dlr~plpe~~~~kFD 223 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALT-GMPKRIAVVDIDERLIKFIEKVAEELG------YNNIEAFVFDLRNPLPEDLKRKFD 223 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhc-CCCceEEEEechHHHHHHHHHHHHHhC------ccchhheeehhcccChHHHHhhCC
Confidence 467899999 333333444333 223689999999999999988888754 478999999999988753 5899
Q ss_pred EEEECCCC
Q 022372 229 AIHVGAAA 236 (298)
Q Consensus 229 ~Ii~~~~~ 236 (298)
+++.+++-
T Consensus 224 vfiTDPpe 231 (354)
T COG1568 224 VFITDPPE 231 (354)
T ss_pred eeecCchh
Confidence 99988864
No 375
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=89.31 E-value=4.2 Score=37.53 Aligned_cols=95 Identities=27% Similarity=0.308 Sum_probs=60.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC--------
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR-------- 218 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~-------- 218 (298)
.++++.+||-.|+|. |..+..+++..|. ..+++++.+++..+.+++. +. -.++..+..
T Consensus 158 ~~~~g~~VlI~g~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~~----g~--------~~~i~~~~~~~~~~~~~ 224 (341)
T cd08262 158 RLTPGEVALVIGCGPIGLAVIAALKARGV-GPIVASDFSPERRALALAM----GA--------DIVVDPAADSPFAAWAA 224 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEECCCHHHHHHHHHc----CC--------cEEEcCCCcCHHHHHHH
Confidence 477889999998764 6677777887653 3588889888887776542 11 011111100
Q ss_pred -CCCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 219 -KGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 219 -~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+.+|+++-...-........+.|+++|+++.
T Consensus 225 ~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~ 262 (341)
T cd08262 225 ELARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVV 262 (341)
T ss_pred HHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 0011224699998655443466778889999999886
No 376
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=89.10 E-value=4.8 Score=37.13 Aligned_cols=94 Identities=20% Similarity=0.268 Sum_probs=60.7
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.+.++.+||-.|+|. |..+..+++..|. .++++++.+++..+.+++ .+. . .+..+..+ .
T Consensus 164 ~~~~~~~vlI~g~g~vg~~~~~~a~~~g~-~~v~~~~~~~~~~~~~~~----~g~------~---~~~~~~~~~~~~l~~ 229 (344)
T cd08284 164 QVRPGDTVAVIGCGPVGLCAVLSAQVLGA-ARVFAVDPVPERLERAAA----LGA------E---PINFEDAEPVERVRE 229 (344)
T ss_pred CCccCCEEEEECCcHHHHHHHHHHHHcCC-ceEEEEcCCHHHHHHHHH----hCC------e---EEecCCcCHHHHHHH
Confidence 367889999998765 6677777887642 378888888777666543 111 1 11111110 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+++.............+.|+++|+++.
T Consensus 230 ~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~ 264 (344)
T cd08284 230 ATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISS 264 (344)
T ss_pred HhCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEE
Confidence 11224689998876655677888999999999875
No 377
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=88.95 E-value=0.64 Score=36.57 Aligned_cols=45 Identities=18% Similarity=0.165 Sum_probs=30.1
Q ss_pred HHHHHHHHHcc--CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCC
Q 022372 138 HATCLQLLEEN--LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHI 185 (298)
Q Consensus 138 ~~~~l~~L~~~--l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s 185 (298)
.++++++-... ..+.....|+|||+|.+.-.|.+.. -.-+|+|.-
T Consensus 43 AAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EG---y~G~GiD~R 89 (112)
T PF07757_consen 43 AAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEG---YPGWGIDAR 89 (112)
T ss_pred HHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCC---CCccccccc
Confidence 34455544321 1234578999999999998888763 456888853
No 378
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=88.81 E-value=1.2 Score=42.28 Aligned_cols=100 Identities=17% Similarity=0.088 Sum_probs=63.6
Q ss_pred cCCCCCEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC--
Q 022372 148 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-- 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-- 223 (298)
..++|.+||-+|.++ |..+..+|+..+ ...+..-.+++.++.+++. +....+++.+ .+..+....
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l~k~l----GAd~vvdy~~-----~~~~e~~kk~~ 222 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLELVKKL----GADEVVDYKD-----ENVVELIKKYT 222 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHHHHHc----CCcEeecCCC-----HHHHHHHHhhc
Confidence 367889999999887 567788898874 3566666777777777543 2211122222 222221111
Q ss_pred CCCccEEEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 224 FAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...||+|+-...-.........+++.||..++.+.
T Consensus 223 ~~~~DvVlD~vg~~~~~~~~~~l~~~g~~~~i~~~ 257 (347)
T KOG1198|consen 223 GKGVDVVLDCVGGSTLTKSLSCLLKGGGGAYIGLV 257 (347)
T ss_pred CCCccEEEECCCCCccccchhhhccCCceEEEEec
Confidence 36799998887776666667777777777766554
No 379
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=88.79 E-value=4.2 Score=37.42 Aligned_cols=94 Identities=21% Similarity=0.258 Sum_probs=61.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-CC---CC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-RK---GW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-~~---~~ 221 (298)
.++++.+||-.|+|. |..+..+++.. | .++++++.+++..+.+++ + +. .. ++.... .. ..
T Consensus 159 ~~~~g~~vlV~g~g~vG~~~~~la~~~~g--~~v~~~~~~~~~~~~~~~-~---g~------~~--v~~~~~~~~~~~~v 224 (338)
T PRK09422 159 GIKPGQWIAIYGAGGLGNLALQYAKNVFN--AKVIAVDINDDKLALAKE-V---GA------DL--TINSKRVEDVAKII 224 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCC--CeEEEEeCChHHHHHHHH-c---CC------cE--EecccccccHHHHH
Confidence 478899999999765 77778888863 4 589999999998888843 2 11 11 111100 00 00
Q ss_pred -CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 -PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 -~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+.+|.++....-....+...+.|+++|+++.
T Consensus 225 ~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~ 259 (338)
T PRK09422 225 QEKTGGAHAAVVTAVAKAAFNQAVDAVRAGGRVVA 259 (338)
T ss_pred HHhcCCCcEEEEeCCCHHHHHHHHHhccCCCEEEE
Confidence 0012478555555556677888999999999886
No 380
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=88.67 E-value=6.6 Score=33.16 Aligned_cols=105 Identities=13% Similarity=0.094 Sum_probs=65.3
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG 217 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~ 217 (298)
...+.+.+.....++.+|+=|||=+-+....- ...+..+++..|++....... ++ .++.-|.
T Consensus 12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~--~~~~~~~~~Lle~D~RF~~~~---------------~~-~F~fyD~ 73 (162)
T PF10237_consen 12 AEFLARELLDGALDDTRIACLSTPSLYEALKK--ESKPRIQSFLLEYDRRFEQFG---------------GD-EFVFYDY 73 (162)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHh--hcCCCccEEEEeecchHHhcC---------------Cc-ceEECCC
Confidence 34444444433456689999999886654443 223556899999986543321 22 4555555
Q ss_pred CCCC--C--CCCCccEEEECCCCc------hhHHHHHhccccCcEEEEEECCC
Q 022372 218 RKGW--P--EFAPYDAIHVGAAAP------EIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 218 ~~~~--~--~~~~fD~Ii~~~~~~------~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.... + -.++||+|+++++.- +..+.+..++|+++.+++..+..
T Consensus 74 ~~p~~~~~~l~~~~d~vv~DPPFl~~ec~~k~a~ti~~L~k~~~kii~~Tg~~ 126 (162)
T PF10237_consen 74 NEPEELPEELKGKFDVVVIDPPFLSEECLTKTAETIRLLLKPGGKIILCTGEE 126 (162)
T ss_pred CChhhhhhhcCCCceEEEECCCCCCHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence 4321 1 136899999999972 22345556678999999877653
No 381
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=88.58 E-value=3 Score=39.61 Aligned_cols=97 Identities=16% Similarity=0.147 Sum_probs=61.4
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCE-EEEEc---CCC---C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSL-SVHVG---DGR---K 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v-~~~~g---D~~---~ 219 (298)
.+++|.+||-.|+|. |..+..+++..|. .+|++++.+++..+.+++. +. +.+ ..... +.. .
T Consensus 200 ~~~~g~~VlV~g~g~vG~~ai~lA~~~G~-~~vi~~~~~~~~~~~~~~~----g~------~~~v~~~~~~~~~~~~~v~ 268 (384)
T cd08265 200 GFRPGAYVVVYGAGPIGLAAIALAKAAGA-SKVIAFEISEERRNLAKEM----GA------DYVFNPTKMRDCLSGEKVM 268 (384)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHc----CC------CEEEcccccccccHHHHHH
Confidence 477899999998876 7777778887652 3799999888866665442 21 111 00000 000 0
Q ss_pred CCCCCCCccEEEECCCC-chhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAA-PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~-~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|+|+..... ........+.|+++|+++.
T Consensus 269 ~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~ 305 (384)
T cd08265 269 EVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVY 305 (384)
T ss_pred HhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEE
Confidence 11222469999876553 2466788899999999986
No 382
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.58 E-value=5.1 Score=36.99 Aligned_cols=95 Identities=19% Similarity=0.271 Sum_probs=61.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.++++.+||-.|+|. |..+..+|+..|. ..+++++.+++..+.+++ .+.. .++...... .
T Consensus 165 ~~~~g~~vlI~g~g~vg~~~~~lak~~G~-~~v~~~~~~~~~~~~~~~----~ga~--------~v~~~~~~~~~~~i~~ 231 (345)
T cd08287 165 GVRPGSTVVVVGDGAVGLCAVLAAKRLGA-ERIIAMSRHEDRQALARE----FGAT--------DIVAERGEEAVARVRE 231 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHH----cCCc--------eEecCCcccHHHHHHH
Confidence 467888998888876 7777888888653 358999988766655543 1111 111111000 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+++....-........+.|+++|+++.
T Consensus 232 ~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~ 266 (345)
T cd08287 232 LTGGVGADAVLECVGTQESMEQAIAIARPGGRVGY 266 (345)
T ss_pred hcCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEE
Confidence 11224589998765555677888999999999986
No 383
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=88.14 E-value=5.1 Score=37.22 Aligned_cols=95 Identities=16% Similarity=0.079 Sum_probs=60.9
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------G 220 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~ 220 (298)
.+.++.+||-.|+|. |..+..+|+..|. ..+++++.+++..+.+++. +. . .++...... .
T Consensus 171 ~~~~g~~vlI~g~g~vG~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~~----g~------~--~v~~~~~~~~~~~~~~ 237 (350)
T cd08256 171 NIKFDDVVVLAGAGPLGLGMIGAARLKNP-KKLIVLDLKDERLALARKF----GA------D--VVLNPPEVDVVEKIKE 237 (350)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-cEEEEEcCCHHHHHHHHHc----CC------c--EEecCCCcCHHHHHHH
Confidence 467888998877765 7777888888753 3688899888776655431 11 1 111111100 0
Q ss_pred CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 221 WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
......+|+++....-........+.|+++|+++.
T Consensus 238 ~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~ 272 (350)
T cd08256 238 LTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVE 272 (350)
T ss_pred HhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEE
Confidence 11223589998765544566778999999999887
No 384
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.02 E-value=4.1 Score=36.73 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=60.5
Q ss_pred cCCCCCEEEEEcC--CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCC
Q 022372 148 NLKPGMHALDIGS--GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~--GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~ 222 (298)
.+.+|.+||-.|+ +.|..+..+++..| .+|+++..+++..+.+++ .+. ..+-....+... ..
T Consensus 139 ~~~~g~~vlV~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~------~~~~~~~~~~~~~i~~~- 205 (320)
T cd08243 139 GLQPGDTLLIRGGTSSVGLAALKLAKALG--ATVTATTRSPERAALLKE----LGA------DEVVIDDGAIAEQLRAA- 205 (320)
T ss_pred CCCCCCEEEEEcCCChHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh----cCC------cEEEecCccHHHHHHHh-
Confidence 3678899999996 34788888888865 579999888877666632 111 111100001000 11
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
...+|+++....- .......+.|+++|+++.
T Consensus 206 -~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~ 236 (320)
T cd08243 206 -PGGFDKVLELVGT-ATLKDSLRHLRPGGIVCM 236 (320)
T ss_pred -CCCceEEEECCCh-HHHHHHHHHhccCCEEEE
Confidence 2569999876553 567788899999999875
No 385
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=87.96 E-value=6.5 Score=35.45 Aligned_cols=94 Identities=20% Similarity=0.217 Sum_probs=59.8
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcE-EEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGR-AVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~-V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.++++.+||-.|+|. |..+..+|+..| .+ ++.+..+++..+.+++ .+. . .++......
T Consensus 126 ~~~~~~~vlI~g~g~vg~~~~~la~~~g--~~~v~~~~~~~~~~~~~~~----~g~------~--~~~~~~~~~~~~~l~ 191 (312)
T cd08269 126 WIRAGKTVAVIGAGFIGLLFLQLAAAAG--ARRVIAIDRRPARLALARE----LGA------T--EVVTDDSEAIVERVR 191 (312)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CcEEEEECCCHHHHHHHHH----hCC------c--eEecCCCcCHHHHHH
Confidence 467889999988654 666677777765 35 8888888776664432 111 1 111111100
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|+++.............+.|+++|+++.
T Consensus 192 ~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~ 227 (312)
T cd08269 192 ELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVI 227 (312)
T ss_pred HHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 011224699999876555567788999999999986
No 386
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=87.84 E-value=5.5 Score=36.82 Aligned_cols=95 Identities=19% Similarity=0.158 Sum_probs=61.0
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC------CCC
Q 022372 149 LKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR------KGW 221 (298)
Q Consensus 149 l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~------~~~ 221 (298)
..+|.+||-.|+|. |..+..+++..|. .++++++.+++..+.+++. +. . .++..... ...
T Consensus 161 ~~~g~~vlV~~~g~vg~~~~~la~~~G~-~~v~~~~~~~~~~~~~~~l----g~------~--~~~~~~~~~~~~~~~~~ 227 (341)
T PRK05396 161 DLVGEDVLITGAGPIGIMAAAVAKHVGA-RHVVITDVNEYRLELARKM----GA------T--RAVNVAKEDLRDVMAEL 227 (341)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHcCC-CEEEEEcCCHHHHHHHHHh----CC------c--EEecCccccHHHHHHHh
Confidence 45788998888776 7777888887653 2678888888776665432 11 1 11111100 011
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
.....+|+|+.............+.|+++|+++..
T Consensus 228 ~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 228 GMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred cCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 22346899988655556677889999999999884
No 387
>PRK11524 putative methyltransferase; Provisional
Probab=87.77 E-value=0.54 Score=43.17 Aligned_cols=51 Identities=20% Similarity=0.100 Sum_probs=37.4
Q ss_pred CCEEEEEcCCCCCC--CCCCCccEEEECCCCc----------------------hhHHHHHhccccCcEEEEEEC
Q 022372 208 GSLSVHVGDGRKGW--PEFAPYDAIHVGAAAP----------------------EIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 208 ~~v~~~~gD~~~~~--~~~~~fD~Ii~~~~~~----------------------~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
.+.+++++|..+.. .+.++||+|+++++.. ....++.++|||||.+++...
T Consensus 7 ~~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~ 81 (284)
T PRK11524 7 EAKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS 81 (284)
T ss_pred CCCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 45678888887632 2347899999988741 244778899999999998543
No 388
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=87.73 E-value=0.27 Score=49.49 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=35.5
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCH
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIP 186 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~ 186 (298)
++.++..|||+||..|......++.++.++-|+|+|+.|
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 578889999999999999999999998888999999876
No 389
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.53 E-value=1.7 Score=35.41 Aligned_cols=39 Identities=31% Similarity=0.423 Sum_probs=26.9
Q ss_pred EEcCCCc--HHHHHHH-HHcCCCcEEEEEeCCHHHHHHHHHH
Q 022372 157 DIGSGTG--YLTACFA-LMVGPQGRAVGVEHIPELVVSSIQN 195 (298)
Q Consensus 157 DiG~GsG--~~t~~La-~~~g~~~~V~giD~s~~~l~~A~~~ 195 (298)
|||+..| ..+..+. +..++..+|+++|.++...+..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6666554 3456778999999999999999888
No 390
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=87.32 E-value=7.5 Score=35.82 Aligned_cols=95 Identities=23% Similarity=0.271 Sum_probs=63.4
Q ss_pred cCCCCCEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.++++.+||-.|+++ |..+..+++..| .+|+.+..+++..+.+++ + +. .. ++......
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~------~~--v~~~~~~~~~~~~~ 227 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMG--LRVIAIDVGDEKLELAKE-L---GA------DA--FVDFKKSDDVEAVK 227 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH-c---CC------cE--EEcCCCccHHHHHH
Confidence 377889999999864 778888888875 489999988877666532 2 11 11 11111100
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
.......+|+++.............+.|+++|+++..
T Consensus 228 ~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~ 264 (341)
T cd08297 228 ELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCV 264 (341)
T ss_pred HHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEe
Confidence 0112246999997565556777889999999999974
No 391
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=87.26 E-value=9.1 Score=35.36 Aligned_cols=93 Identities=18% Similarity=0.209 Sum_probs=61.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-CC------
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-RK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-~~------ 219 (298)
.+.++.+||-.|+|. |..+..+++..| .++++++.+++..+.+++ + +. . .++.... ..
T Consensus 162 ~~~~~~~vlV~g~g~vg~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~-~---g~------~--~~i~~~~~~~~~~~~~ 227 (345)
T cd08260 162 RVKPGEWVAVHGCGGVGLSAVMIASALG--ARVIAVDIDDDKLELARE-L---GA------V--ATVNASEVEDVAAAVR 227 (345)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH-h---CC------C--EEEccccchhHHHHHH
Confidence 367788999999765 777777888764 589999988887777743 2 21 1 1111111 00
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.... +.+|.++.............+.|+++|+++.
T Consensus 228 ~~~~-~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~ 262 (345)
T cd08260 228 DLTG-GGAHVSVDALGIPETCRNSVASLRKRGRHVQ 262 (345)
T ss_pred HHhC-CCCCEEEEcCCCHHHHHHHHHHhhcCCEEEE
Confidence 0112 2699998765544566778999999999886
No 392
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.21 E-value=8.7 Score=33.26 Aligned_cols=98 Identities=17% Similarity=0.124 Sum_probs=58.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-------- 221 (298)
++.+||-.|++ |.++..+++.+ ..+.+|++++.+++..+...+..... .++.++..|..+..
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--------~~~~~~~~Dl~~~~~~~~~~~~ 74 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY--------GNIHYVVGDVSSTESARNVIEK 74 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--------CCeEEEECCCCCHHHHHHHHHH
Confidence 35789999986 44444444433 22358999999987766554443321 36778888877521
Q ss_pred --CCCCCccEEEECCCCc-----------------------hhHHHHHhccccCcEEEEEE
Q 022372 222 --PEFAPYDAIHVGAAAP-----------------------EIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~~-----------------------~l~~~l~~~LkpGG~Lvi~v 257 (298)
...+..|.++.+.... .+.+.+.+.++.+|.+++..
T Consensus 75 ~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 75 AAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 0013568887776421 11244556677788877743
No 393
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=86.92 E-value=3.6 Score=35.90 Aligned_cols=111 Identities=21% Similarity=0.221 Sum_probs=69.5
Q ss_pred cChHHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHH---cCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCC
Q 022372 132 ISAPHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALM---VGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEG 208 (298)
Q Consensus 132 is~p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~---~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~ 208 (298)
+..|.....+-+.+- .++| ..|+|.|+-.|..+..+|.. .|...+|+++|++-..++.+... .+
T Consensus 52 ~k~p~D~~~yQellw-~~~P-~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----------~p 118 (237)
T COG3510 52 IKSPSDMWNYQELLW-ELQP-SLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----------VP 118 (237)
T ss_pred cCCHHHHHHHHHHHH-hcCC-ceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----------CC
Confidence 344555555555553 3444 68999999998877766654 35557999999987665554322 27
Q ss_pred CEEEEEcCCCCCCC------CCCCccEEEECCCCc----hhH---HHHHhccccCcEEEE
Q 022372 209 SLSVHVGDGRKGWP------EFAPYDAIHVGAAAP----EIP---QALIDQLKPGGRMVI 255 (298)
Q Consensus 209 ~v~~~~gD~~~~~~------~~~~fD~Ii~~~~~~----~l~---~~l~~~LkpGG~Lvi 255 (298)
.+.++.++..+..- ..+.|-.|++..... ++. +.+..+|..|-.+++
T Consensus 119 ~i~f~egss~dpai~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vV 178 (237)
T COG3510 119 DILFIEGSSTDPAIAEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVV 178 (237)
T ss_pred CeEEEeCCCCCHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEE
Confidence 89999999876321 112344565544432 333 445567888888887
No 394
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=86.84 E-value=0.62 Score=45.53 Aligned_cols=103 Identities=17% Similarity=0.046 Sum_probs=62.5
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 231 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~-~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii 231 (298)
+.++|+|+|.|.-.-.+...++. ...++.||.+..|...+.++++...........++.+ -+..-.......||+|+
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~--~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVF--HRQRLPIDIKNGYDLVI 279 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccch--hcccCCCCcccceeeEE
Confidence 57889999887655555554433 3478999999999999988775411100001112111 12222233335699999
Q ss_pred ECCCCchhH----------HHHHhccccCcEEEEEE
Q 022372 232 VGAAAPEIP----------QALIDQLKPGGRMVIPV 257 (298)
Q Consensus 232 ~~~~~~~l~----------~~l~~~LkpGG~Lvi~v 257 (298)
+...+.++. .......++||.+|+.-
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe 315 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIE 315 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEe
Confidence 988764432 33456788999999843
No 395
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.70 E-value=0.13 Score=43.11 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=37.6
Q ss_pred EEEEEcCCCCCCCCCCCccEEEECCCCchhH--------HHHHhccccCcEEEEEECCCc
Q 022372 210 LSVHVGDGRKGWPEFAPYDAIHVGAAAPEIP--------QALIDQLKPGGRMVIPVGNIF 261 (298)
Q Consensus 210 v~~~~gD~~~~~~~~~~fD~Ii~~~~~~~l~--------~~l~~~LkpGG~Lvi~v~~~~ 261 (298)
++++.....+..+..++.|+|++.-+++|+- +.+++.|||||.|-+.+++..
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~ 90 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLK 90 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcc
Confidence 3444333333444558899998887776653 678999999999999998753
No 396
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.58 E-value=1.8 Score=39.38 Aligned_cols=41 Identities=22% Similarity=0.339 Sum_probs=33.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcC----CCcEEEEEeCCHHHH
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVG----PQGRAVGVEHIPELV 189 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g----~~~~V~giD~s~~~l 189 (298)
+.+...++|+|||.|.++.++++.+. +...++.||......
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~ 60 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH 60 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc
Confidence 56778999999999999999999873 336899999866443
No 397
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=86.25 E-value=1.7 Score=43.00 Aligned_cols=89 Identities=17% Similarity=0.109 Sum_probs=58.6
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 150 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 150 ~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
-.|.+|+-+|+|. |...+..++.+| .+|+.+|.++.....+.. .+ +++. +..+. ....|
T Consensus 252 LaGKtVgVIG~G~IGr~vA~rL~a~G--a~ViV~e~dp~~a~~A~~----~G---------~~~~--~leel---l~~AD 311 (476)
T PTZ00075 252 IAGKTVVVCGYGDVGKGCAQALRGFG--ARVVVTEIDPICALQAAM----EG---------YQVV--TLEDV---VETAD 311 (476)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCC--CEEEEEeCCchhHHHHHh----cC---------ceec--cHHHH---HhcCC
Confidence 3688999999998 666666666554 589999988765433322 11 1111 11111 13579
Q ss_pred EEEECCCCchhH-HHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAPEIP-QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~~l~-~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|++.....++. .+.++.+|||++++- ++.
T Consensus 312 IVI~atGt~~iI~~e~~~~MKpGAiLIN-vGr 342 (476)
T PTZ00075 312 IFVTATGNKDIITLEHMRRMKNNAIVGN-IGH 342 (476)
T ss_pred EEEECCCcccccCHHHHhccCCCcEEEE-cCC
Confidence 998877666665 688999999999876 443
No 398
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=85.96 E-value=5.3 Score=36.49 Aligned_cols=101 Identities=23% Similarity=0.228 Sum_probs=65.7
Q ss_pred cCCCCCEEEEEcC--CCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCC
Q 022372 148 NLKPGMHALDIGS--GTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~--GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~ 222 (298)
++++|+.||--.+ |.|.+...+++..+ .++++.-.+.+..+.|+++=.+ ..|.....|..+ .+.
T Consensus 143 ~vkpGhtVlvhaAAGGVGlll~Ql~ra~~--a~tI~~asTaeK~~~akenG~~---------h~I~y~~eD~v~~V~kiT 211 (336)
T KOG1197|consen 143 NVKPGHTVLVHAAAGGVGLLLCQLLRAVG--AHTIATASTAEKHEIAKENGAE---------HPIDYSTEDYVDEVKKIT 211 (336)
T ss_pred CCCCCCEEEEEeccccHHHHHHHHHHhcC--cEEEEEeccHHHHHHHHhcCCc---------ceeeccchhHHHHHHhcc
Confidence 5899999876544 34778888888765 5888888888888888775322 234444444332 122
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEEEECCCc
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIF 261 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~~~ 261 (298)
.....|+++-.-... -+..-+..||++|.++- +++..
T Consensus 212 ngKGVd~vyDsvG~d-t~~~sl~~Lk~~G~mVS-fG~as 248 (336)
T KOG1197|consen 212 NGKGVDAVYDSVGKD-TFAKSLAALKPMGKMVS-FGNAS 248 (336)
T ss_pred CCCCceeeeccccch-hhHHHHHHhccCceEEE-ecccc
Confidence 224577776555443 34556778999999875 77654
No 399
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=85.94 E-value=1.9 Score=41.18 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=63.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-C-CCCC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-P-EFAP 226 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~-~~~~ 226 (298)
..+|.+|+|..|-.|.-|.+++....+.+++++.|.+.+..+.-++.+...+. .+++...+|+.... + .-..
T Consensus 211 p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~------~~~~~~~~df~~t~~~~~~~~ 284 (413)
T KOG2360|consen 211 PRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV------SIVESVEGDFLNTATPEKFRD 284 (413)
T ss_pred CCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC------CccccccccccCCCCcccccc
Confidence 67789999999999999999999887789999999999999998888887665 46666688877631 1 1123
Q ss_pred ccEEEECCCC
Q 022372 227 YDAIHVGAAA 236 (298)
Q Consensus 227 fD~Ii~~~~~ 236 (298)
.-.|+++.++
T Consensus 285 v~~iL~Dpsc 294 (413)
T KOG2360|consen 285 VTYILVDPSC 294 (413)
T ss_pred eeEEEeCCCC
Confidence 4556666553
No 400
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=85.83 E-value=7.9 Score=35.68 Aligned_cols=92 Identities=22% Similarity=0.217 Sum_probs=57.0
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC----CC
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK----GW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~----~~ 221 (298)
.+.++.+||-.|+ |. |..+..+++..+ .++++++.++ ..+.+++ .+. . .+...+... ..
T Consensus 174 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~vi~~~~~~-~~~~~~~----~g~------~--~~~~~~~~~~~~~~~ 238 (350)
T cd08274 174 GVGAGETVLVTGASGGVGSALVQLAKRRG--AIVIAVAGAA-KEEAVRA----LGA------D--TVILRDAPLLADAKA 238 (350)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHhcC--CEEEEEeCch-hhHHHHh----cCC------e--EEEeCCCccHHHHHh
Confidence 4778999999998 43 778888888765 5688887543 4444422 111 1 111111000 01
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.....+|+++....- ...+...+.|+++|+++.
T Consensus 239 ~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 239 LGGEPVDVVADVVGG-PLFPDLLRLLRPGGRYVT 271 (350)
T ss_pred hCCCCCcEEEecCCH-HHHHHHHHHhccCCEEEE
Confidence 122469999866553 466788999999999885
No 401
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=85.81 E-value=8.9 Score=34.19 Aligned_cols=93 Identities=22% Similarity=0.255 Sum_probs=60.8
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+.++.+||-.|+ | .|..+..+++..| .++++++.+++..+.+++ .+. . .++..+...
T Consensus 133 ~~~~g~~vlI~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~----~g~------~--~~~~~~~~~~~~~~~ 198 (320)
T cd05286 133 PVKPGDTVLVHAAAGGVGLLLTQWAKALG--ATVIGTVSSEEKAELARA----AGA------D--HVINYRDEDFVERVR 198 (320)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----CCC------C--EEEeCCchhHHHHHH
Confidence 4678899999994 3 4778888888765 578999888887766643 111 1 111111100
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|.++....- .......+.|+++|+++.
T Consensus 199 ~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~v~ 233 (320)
T cd05286 199 EITGGRGVDVVYDGVGK-DTFEGSLDSLRPRGTLVS 233 (320)
T ss_pred HHcCCCCeeEEEECCCc-HhHHHHHHhhccCcEEEE
Confidence 11122469999876554 466778899999999886
No 402
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=85.69 E-value=0.44 Score=37.57 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=24.0
Q ss_pred CccEEEECCCCc------------hhHHHHHhccccCcEEEEE
Q 022372 226 PYDAIHVGAAAP------------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 226 ~fD~Ii~~~~~~------------~l~~~l~~~LkpGG~Lvi~ 256 (298)
.||+|+|-.+.- .+++.+++.|+|||.+++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 489999988753 3457888999999999994
No 403
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=85.66 E-value=12 Score=35.48 Aligned_cols=97 Identities=15% Similarity=0.126 Sum_probs=58.0
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC--CCC---CC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD--GRK---GW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD--~~~---~~ 221 (298)
.++++++||-.|+|. |..+..+++..|. .+|+.++.+++..+.+++ + +.. .-+.....+ ... ..
T Consensus 187 ~~~~g~~VlV~G~g~vG~~~~~~a~~~G~-~~Vi~~~~~~~~~~~a~~-l---Ga~-----~~i~~~~~~~~~~~~v~~~ 256 (373)
T cd08299 187 KVTPGSTCAVFGLGGVGLSAIMGCKAAGA-SRIIAVDINKDKFAKAKE-L---GAT-----ECINPQDYKKPIQEVLTEM 256 (373)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHHHH-c---CCc-----eEecccccchhHHHHHHHH
Confidence 478899999998865 6677777777642 279999999888777743 2 110 001111000 000 01
Q ss_pred CCCCCccEEEECCCCchhHHH-HHhccccCcEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQA-LIDQLKPGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~-l~~~LkpGG~Lvi 255 (298)
.. +.+|+|+-.......... +...++++|+++.
T Consensus 257 ~~-~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~ 290 (373)
T cd08299 257 TD-GGVDFSFEVIGRLDTMKAALASCHEGYGVSVI 290 (373)
T ss_pred hC-CCCeEEEECCCCcHHHHHHHHhhccCCCEEEE
Confidence 12 358999887665455555 4445568898886
No 404
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=85.62 E-value=9.8 Score=36.08 Aligned_cols=101 Identities=19% Similarity=0.126 Sum_probs=60.7
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEE-EEEc-C-------
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLS-VHVG-D------- 216 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~-~~~g-D------- 216 (298)
.+.++.+||-.|+ |. |..+..+++..| .+++.++.+++..+.+++ +.. ...+...... +... +
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G--~~vv~~~~s~~~~~~~~~-~G~---~~~i~~~~~~~~~~~~~~~~~~~~ 263 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAG--ANPVAVVSSEEKAEYCRA-LGA---EGVINRRDFDHWGVLPDVNSEAYT 263 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHH-cCC---CEEEcccccccccccccccchhhh
Confidence 3678899999997 44 777788888765 577888988888888765 211 0000000000 0000 0
Q ss_pred --------C---CCCCCCCC-CccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 217 --------G---RKGWPEFA-PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 217 --------~---~~~~~~~~-~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
. ........ .+|+++..... .......+.|+++|+++.
T Consensus 264 ~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~-~~~~~~~~~l~~~G~~v~ 313 (393)
T cd08246 264 AWTKEARRFGKAIWDILGGREDPDIVFEHPGR-ATFPTSVFVCDRGGMVVI 313 (393)
T ss_pred hhhhccchHHHHHHHHhCCCCCCeEEEECCch-HhHHHHHHHhccCCEEEE
Confidence 0 00011112 58999876543 456778899999999987
No 405
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=85.57 E-value=3.3 Score=38.02 Aligned_cols=93 Identities=17% Similarity=0.232 Sum_probs=60.9
Q ss_pred cCCCCCEEEEEcCC--CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~G--sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~ 225 (298)
.+.++.+||-.|++ .|..+..+++..| .+++.++.+++..+.+++. ... . +. .+ .+ ..+... . +
T Consensus 159 ~~~~~~~vlI~g~~g~~g~~~~~la~~~g--~~vi~~~~~~~~~~~~~~~-~~~-~---~~-~~-~~-~~~v~~-~---~ 224 (334)
T PRK13771 159 GVKKGETVLVTGAGGGVGIHAIQVAKALG--AKVIAVTSSESKAKIVSKY-ADY-V---IV-GS-KF-SEEVKK-I---G 224 (334)
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHH-HHH-h---cC-ch-hH-HHHHHh-c---C
Confidence 37788999999994 3888888888865 5789999988888877543 211 1 11 01 00 001111 1 2
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.+|+++....- .......+.|+++|+++.
T Consensus 225 ~~d~~ld~~g~-~~~~~~~~~l~~~G~~v~ 253 (334)
T PRK13771 225 GADIVIETVGT-PTLEESLRSLNMGGKIIQ 253 (334)
T ss_pred CCcEEEEcCCh-HHHHHHHHHHhcCCEEEE
Confidence 48988865544 346788899999999876
No 406
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=85.55 E-value=7.8 Score=35.58 Aligned_cols=91 Identities=10% Similarity=0.032 Sum_probs=55.7
Q ss_pred CCCEEEEE--cCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------CC
Q 022372 151 PGMHALDI--GSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------GW 221 (298)
Q Consensus 151 ~g~~VLDi--G~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------~~ 221 (298)
++.++|-+ |+|. |..+..+|+..| .++++++.+++..+.+++ .+. . .++..+..+ ..
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G--~~vi~~~~~~~~~~~~~~----~g~------~--~~i~~~~~~~~~~v~~~ 207 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADG--IKVINIVRRKEQVDLLKK----IGA------E--YVLNSSDPDFLEDLKEL 207 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCC------c--EEEECCCccHHHHHHHH
Confidence 44455554 5554 777788888765 579999999988777754 121 1 122111111 01
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
.....+|+++....-. ......+.|+++|+++..
T Consensus 208 ~~~~~~d~vid~~g~~-~~~~~~~~l~~~G~~v~~ 241 (324)
T cd08291 208 IAKLNATIFFDAVGGG-LTGQILLAMPYGSTLYVY 241 (324)
T ss_pred hCCCCCcEEEECCCcH-HHHHHHHhhCCCCEEEEE
Confidence 1223689998765543 345668889999999873
No 407
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=85.39 E-value=3.1 Score=38.03 Aligned_cols=72 Identities=25% Similarity=0.253 Sum_probs=56.6
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
.+.+|+...|+|+-.|..|-.|.++- -.|+++|.-+-.-.. +..+.|+-...|+...-|...+.
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr~---m~V~aVDng~ma~sL-------------~dtg~v~h~r~DGfk~~P~r~~i 271 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKRN---MRVYAVDNGPMAQSL-------------MDTGQVTHLREDGFKFRPTRSNI 271 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhcc---eEEEEeccchhhhhh-------------hcccceeeeeccCcccccCCCCC
Confidence 46789999999999999999888763 699999975532111 23378888999998877755789
Q ss_pred cEEEECCC
Q 022372 228 DAIHVGAA 235 (298)
Q Consensus 228 D~Ii~~~~ 235 (298)
|..+|+.+
T Consensus 272 dWmVCDmV 279 (358)
T COG2933 272 DWMVCDMV 279 (358)
T ss_pred ceEEeehh
Confidence 99999986
No 408
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=84.98 E-value=5.2 Score=34.99 Aligned_cols=91 Identities=13% Similarity=0.114 Sum_probs=58.0
Q ss_pred CCCEEEEEcCCC-cHH-HHHHHHHcCCCcEEEEEeC--CHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCC
Q 022372 151 PGMHALDIGSGT-GYL-TACFALMVGPQGRAVGVEH--IPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAP 226 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~-t~~La~~~g~~~~V~giD~--s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~ 226 (298)
.|.+||-+|.|. |.- ...|.+. | .+|+.++. +++..+.++ . .++.++.++..... ...
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~-g--a~VtVvsp~~~~~l~~l~~----~---------~~i~~~~~~~~~~d--l~~ 69 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKA-G--AQLRVIAEELESELTLLAE----Q---------GGITWLARCFDADI--LEG 69 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHC-C--CEEEEEcCCCCHHHHHHHH----c---------CCEEEEeCCCCHHH--hCC
Confidence 367999999886 433 2333333 3 56666654 333333321 1 47888887765432 246
Q ss_pred ccEEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 227 YDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 227 fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|+|+....-+++-..+....+.-|.++-.+.+
T Consensus 70 ~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~ 102 (205)
T TIGR01470 70 AFLVIAATDDEELNRRVAHAARARGVPVNVVDD 102 (205)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHcCCEEEECCC
Confidence 899998888777777788777788888754444
No 409
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.78 E-value=2.9 Score=40.26 Aligned_cols=52 Identities=19% Similarity=0.208 Sum_probs=38.6
Q ss_pred HHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 142 LQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 142 l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
++.|. +.++++||-|.+|......++.+ +| .+|++||.++......+-++..
T Consensus 28 ~~aL~--i~~~d~vl~ItSaG~N~L~yL~~--~P-~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 28 MEALN--IGPDDRVLTITSAGCNALDYLLA--GP-KRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred HHHhC--CCCCCeEEEEccCCchHHHHHhc--CC-ceEEEEeCCHHHHHHHHHHHHH
Confidence 45565 89999999997776665555554 45 6999999999887776655543
No 410
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=84.76 E-value=5.8 Score=35.29 Aligned_cols=93 Identities=14% Similarity=0.138 Sum_probs=62.4
Q ss_pred CCCEEEEEcCCCcHHH--HHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 151 PGMHALDIGSGTGYLT--ACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t--~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
.+.+||-||.|.-... ..|.+. +..-+|++-++++++.+.++. ++++++..+...... ..++
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~-gA~VtVVap~i~~el~~l~~~-------------~~i~~~~r~~~~~dl--~g~~ 87 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKK-GCYVYILSKKFSKEFLDLKKY-------------GNLKLIKGNYDKEFI--KDKH 87 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCCCHHHHHHHhC-------------CCEEEEeCCCChHHh--CCCc
Confidence 5679999999874322 233333 544566777888887665431 578888776554332 3578
Q ss_pred EEEECCCCchhHHHHHhccccCcEEEEEECC
Q 022372 229 AIHVGAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 229 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+|++...-+.+-+.+.+.-+.-|.++..+.+
T Consensus 88 LViaATdD~~vN~~I~~~a~~~~~lvn~vd~ 118 (223)
T PRK05562 88 LIVIATDDEKLNNKIRKHCDRLYKLYIDCSD 118 (223)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCeEEEcCC
Confidence 8888877777888888877777777765544
No 411
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=84.01 E-value=14 Score=32.83 Aligned_cols=91 Identities=22% Similarity=0.169 Sum_probs=55.1
Q ss_pred CCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC--CCCC
Q 022372 149 LKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG--WPEF 224 (298)
Q Consensus 149 l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~--~~~~ 224 (298)
+.++.+||-.|+ | .|..+..+++..+ .+++.++.++ ..+.+++ .+.. .++....... ....
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~-~~~~~~~----~g~~--------~~~~~~~~~~~~~~~~ 206 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARG--ARVIATASAA-NADFLRS----LGAD--------EVIDYTKGDFERAAAP 206 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcC--CEEEEEecch-hHHHHHH----cCCC--------EEEeCCCCchhhccCC
Confidence 678899999996 3 3677777777754 5788877665 4444422 2211 1111111000 1222
Q ss_pred CCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 225 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
..+|+++....-. ......+.|+++|+++.
T Consensus 207 ~~~d~v~~~~~~~-~~~~~~~~l~~~g~~v~ 236 (309)
T cd05289 207 GGVDAVLDTVGGE-TLARSLALVKPGGRLVS 236 (309)
T ss_pred CCceEEEECCchH-HHHHHHHHHhcCcEEEE
Confidence 4689988755443 56778889999999886
No 412
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=83.61 E-value=3.4 Score=37.57 Aligned_cols=94 Identities=20% Similarity=0.229 Sum_probs=53.2
Q ss_pred CCCCCEEEEEcCCC--cH--HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC
Q 022372 149 LKPGMHALDIGSGT--GY--LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF 224 (298)
Q Consensus 149 l~~g~~VLDiG~Gs--G~--~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~ 224 (298)
++.+++||-+|+|+ |. -+..|.+.++.++.++-.|+.+- .. +--..+.+|.....++
T Consensus 59 VP~nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~--------vS----------Da~~~~~~Dc~t~~~~- 119 (299)
T PF06460_consen 59 VPHNMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY--------VS----------DADQSIVGDCRTYMPP- 119 (299)
T ss_dssp --TT-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS----------B-----------SSSEEEES-GGGEEES-
T ss_pred eccCcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh--------cc----------ccCCceeccccccCCC-
Confidence 45689999999998 43 56777788755667777887531 11 2223567787665554
Q ss_pred CCccEEEECCC-------------CchhH----HHHHhccccCcEEEEEECCCc
Q 022372 225 APYDAIHVGAA-------------APEIP----QALIDQLKPGGRMVIPVGNIF 261 (298)
Q Consensus 225 ~~fD~Ii~~~~-------------~~~l~----~~l~~~LkpGG~Lvi~v~~~~ 261 (298)
.+||+|+++.= -+.++ .-+.+.|+-||.+.+-+.+..
T Consensus 120 ~k~DlIiSDmYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~S 173 (299)
T PF06460_consen 120 DKFDLIISDMYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHS 173 (299)
T ss_dssp S-EEEEEE----TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS
T ss_pred CcccEEEEecccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeeccc
Confidence 78999998864 12222 445678999999999887643
No 413
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=83.51 E-value=2.5 Score=39.39 Aligned_cols=103 Identities=18% Similarity=0.090 Sum_probs=62.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHc-------------------CCCcEEEEEeCCH--HHHHHHHHHHHHhc----------c
Q 022372 153 MHALDIGSGTGYLTACFALMV-------------------GPQGRAVGVEHIP--ELVVSSIQNIEKSA----------A 201 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~-------------------g~~~~V~giD~s~--~~l~~A~~~~~~~~----------~ 201 (298)
.+||-||.|.|.-...+|..+ .+...++.||+.+ ..++.....+.... +
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 699999999987666666555 0113899999887 44555555443330 0
Q ss_pred -CCccCCCCEEEEEcCCCCCCCCC-------CCccEEEECCCCch-----------hHHHHHhccccCcEEEE
Q 022372 202 -APLLKEGSLSVHVGDGRKGWPEF-------APYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 202 -~~~l~~~~v~~~~gD~~~~~~~~-------~~fD~Ii~~~~~~~-----------l~~~l~~~LkpGG~Lvi 255 (298)
...-+.-++.|.+.|+.....+. ...|+|..-..+.+ +...+-+.++||-.|++
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLV 240 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLV 240 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEE
Confidence 00011236788899987643321 13455544333333 23566778899998887
No 414
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=83.37 E-value=5.9 Score=36.52 Aligned_cols=90 Identities=13% Similarity=0.137 Sum_probs=52.5
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
.|.+|+-+|.|. |...+..++..| .+|+..+.+++..+.+. ..+. ..+. ..+..+ ....+|+
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G--~~V~v~~R~~~~~~~~~----~~g~------~~~~--~~~l~~---~l~~aDi 212 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALG--ARVFVGARSSADLARIT----EMGL------IPFP--LNKLEE---KVAEIDI 212 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHH----HCCC------eeec--HHHHHH---HhccCCE
Confidence 468999999986 544444444434 58999999887544432 1111 1111 111111 1136899
Q ss_pred EEECCCCchhHHHHHhccccCcEEEEEEC
Q 022372 230 IHVGAAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 230 Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
|+...+..-+.++..+.++++ .+++-+.
T Consensus 213 Vint~P~~ii~~~~l~~~k~~-aliIDla 240 (287)
T TIGR02853 213 VINTIPALVLTADVLSKLPKH-AVIIDLA 240 (287)
T ss_pred EEECCChHHhCHHHHhcCCCC-eEEEEeC
Confidence 999876654456777888886 4555444
No 415
>PRK06940 short chain dehydrogenase; Provisional
Probab=83.23 E-value=14 Score=33.31 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=49.0
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---------CC
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW---------PE 223 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~---------~~ 223 (298)
+.+|--|+ |.++..+++.+..+.+|+.++.+++.++...+.+...+ .++.++..|..+.. ..
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~-------~~~~~~~~Dv~d~~~i~~~~~~~~~ 73 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG-------FDVSTQEVDVSSRESVKALAATAQT 73 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC-------CeEEEEEeecCCHHHHHHHHHHHHh
Confidence 35666665 46777777776555789999998876665555444321 35777788876521 11
Q ss_pred CCCccEEEECCCC
Q 022372 224 FAPYDAIHVGAAA 236 (298)
Q Consensus 224 ~~~fD~Ii~~~~~ 236 (298)
.++.|.++.++..
T Consensus 74 ~g~id~li~nAG~ 86 (275)
T PRK06940 74 LGPVTGLVHTAGV 86 (275)
T ss_pred cCCCCEEEECCCc
Confidence 2568999888764
No 416
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=82.86 E-value=14 Score=34.90 Aligned_cols=96 Identities=25% Similarity=0.346 Sum_probs=59.6
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC---CCCCC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR---KGWPE 223 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~---~~~~~ 223 (298)
.+.+|.+||-.|+|. |..+..+++..|. .+++++|.+++..+.+++. +. ..+.....+.. .....
T Consensus 173 ~~~~g~~vlI~g~g~vg~~~~~~a~~~G~-~~vi~~~~~~~~~~~~~~~----g~------~~v~~~~~~~~~~i~~~~~ 241 (375)
T cd08282 173 GVQPGDTVAVFGAGPVGLMAAYSAILRGA-SRVYVVDHVPERLDLAESI----GA------IPIDFSDGDPVEQILGLEP 241 (375)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHc----CC------eEeccCcccHHHHHHHhhC
Confidence 467889999988875 7788888887642 2788899988877766531 10 00100000000 00112
Q ss_pred CCCccEEEECCCCch-----------hHHHHHhccccCcEEEE
Q 022372 224 FAPYDAIHVGAAAPE-----------IPQALIDQLKPGGRMVI 255 (298)
Q Consensus 224 ~~~fD~Ii~~~~~~~-----------l~~~l~~~LkpGG~Lvi 255 (298)
..+|+++....... ......+.|+++|+++.
T Consensus 242 -~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 242 -GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred -CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEE
Confidence 35899987654331 35778899999999864
No 417
>PRK08324 short chain dehydrogenase; Validated
Probab=82.62 E-value=7.9 Score=40.04 Aligned_cols=76 Identities=16% Similarity=0.062 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-------- 221 (298)
+|++||-.|+++| ++..+++.+ ..+.+|+.+|.+++..+.+.+.+... .++.++..|..+..
T Consensus 421 ~gk~vLVTGasgg-IG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--------~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 421 AGKVALVTGAAGG-IGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--------DRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCEEEEecCCCH-HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--------CcEEEEEecCCCHHHHHHHHHH
Confidence 4678998886443 333333332 12258999999988776665544321 36778888876421
Q ss_pred --CCCCCccEEEECCC
Q 022372 222 --PEFAPYDAIHVGAA 235 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~ 235 (298)
...+.+|+|+.++.
T Consensus 492 ~~~~~g~iDvvI~~AG 507 (681)
T PRK08324 492 AALAFGGVDIVVSNAG 507 (681)
T ss_pred HHHHcCCCCEEEECCC
Confidence 01246899988876
No 418
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=82.57 E-value=7.7 Score=33.67 Aligned_cols=97 Identities=18% Similarity=0.071 Sum_probs=50.1
Q ss_pred CCEEEEEcCCC-cH-HHHHHHHHcCCCcEEEEEeCC-------------------HHHHHHHHHHHHHhccCCccCCCCE
Q 022372 152 GMHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHI-------------------PELVVSSIQNIEKSAAAPLLKEGSL 210 (298)
Q Consensus 152 g~~VLDiG~Gs-G~-~t~~La~~~g~~~~V~giD~s-------------------~~~l~~A~~~~~~~~~~~~l~~~~v 210 (298)
+.+||-+|||. |. .+..|++. |- ++++.+|.+ ...++.+.+++++... .-++
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~-Gv-~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np-----~v~i 93 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGA-GV-GTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS-----DIQV 93 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc-CC-CeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC-----CCEE
Confidence 46899999996 54 34444444 43 589999877 2345555566654321 1223
Q ss_pred EEEEcCCCCC--CCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 211 SVHVGDGRKG--WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 211 ~~~~gD~~~~--~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+.+....... ......||+|+....-......+.+..+..+.-++
T Consensus 94 ~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i 140 (202)
T TIGR02356 94 TALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLI 140 (202)
T ss_pred EEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEE
Confidence 3332222111 00124699998876554433333333333343333
No 419
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=82.27 E-value=29 Score=31.65 Aligned_cols=105 Identities=15% Similarity=0.188 Sum_probs=66.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCC---CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC---CC
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGP---QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG---WP 222 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~---~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~---~~ 222 (298)
...+...+|+|+|+-.-+..|...+.+ -.+.+.+|++...++...+.+...... -.+.-+.+|.... ++
T Consensus 76 ~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~-----l~v~~l~~~~~~~La~~~ 150 (321)
T COG4301 76 ITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG-----LEVNALCGDYELALAELP 150 (321)
T ss_pred hhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC-----CeEeehhhhHHHHHhccc
Confidence 445789999999999888887766533 258999999999987766655443211 2455556665432 22
Q ss_pred CCCCccEEEECCCC--------chhHHHHHhccccCcEEEEEEC
Q 022372 223 EFAPYDAIHVGAAA--------PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~--------~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
..+.==.++.+..+ ..+...+...|+||-.+.+-+.
T Consensus 151 ~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvD 194 (321)
T COG4301 151 RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVD 194 (321)
T ss_pred CCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecc
Confidence 21221223444433 2344778889999999998553
No 420
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=82.17 E-value=19 Score=32.61 Aligned_cols=93 Identities=22% Similarity=0.215 Sum_probs=59.4
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-C------C
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-R------K 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-~------~ 219 (298)
.++++.+|+-.|+|. |..+..+++..| .+++.++.+++..+.+++. +. .. ++.... . .
T Consensus 157 ~~~~g~~vli~g~g~~g~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~~----g~------~~--~~~~~~~~~~~~~~~ 222 (336)
T cd08276 157 PLKPGDTVLVQGTGGVSLFALQFAKAAG--ARVIATSSSDEKLERAKAL----GA------DH--VINYRTTPDWGEEVL 222 (336)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHc----CC------CE--EEcCCcccCHHHHHH
Confidence 467888888877654 666677777655 5799999888877776542 21 11 111111 0 0
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|.++.... ........+.|+++|+++.
T Consensus 223 ~~~~~~~~d~~i~~~~-~~~~~~~~~~l~~~G~~v~ 257 (336)
T cd08276 223 KLTGGRGVDHVVEVGG-PGTLAQSIKAVAPGGVISL 257 (336)
T ss_pred HHcCCCCCcEEEECCC-hHHHHHHHHhhcCCCEEEE
Confidence 1122246899987654 4556778899999999886
No 421
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=82.15 E-value=4.9 Score=33.78 Aligned_cols=102 Identities=20% Similarity=0.144 Sum_probs=46.2
Q ss_pred HHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKG 220 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~ 220 (298)
+.+.|......|.+|.-.|+|+...+..-.--..++--.+.+|.++.. .|.. +....+.++.-+...
T Consensus 57 l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~K----------~G~~--~PGt~ipI~~p~~l~- 123 (160)
T PF08484_consen 57 LREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPLK----------QGKY--LPGTHIPIVSPEELK- 123 (160)
T ss_dssp HHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GGG----------TTEE---TTT--EEEEGGG---
T ss_pred HHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChhh----------cCcc--cCCCCCeECCHHHHh-
Confidence 344443223567899999999966553322222233345678877642 2211 222345444443221
Q ss_pred CCCCCCccEEEECCCC--chhHHHHHhccccCcEEEEEEC
Q 022372 221 WPEFAPYDAIHVGAAA--PEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 221 ~~~~~~fD~Ii~~~~~--~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
....|.|++.+.. +++.+.+.+.++.||++++|++
T Consensus 124 ---~~~pd~vivlaw~y~~EI~~~~~~~~~~gg~fi~plP 160 (160)
T PF08484_consen 124 ---ERKPDYVIVLAWNYKDEIIEKLREYLERGGKFIVPLP 160 (160)
T ss_dssp ---SS--SEEEES-GGGHHHHHHHTHHHHHTT-EEEE-SS
T ss_pred ---hCCCCEEEEcChhhHHHHHHHHHHHHhcCCEEEEeCC
Confidence 1356888875543 4566677777889999999875
No 422
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=82.14 E-value=22 Score=32.15 Aligned_cols=93 Identities=20% Similarity=0.243 Sum_probs=58.4
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+.+|.+||-.|+ | .|..+..+|+..| .+++.+.-+++..+.+++ . +. . .++......
T Consensus 136 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~~~~~~~~~~-~---g~------~--~~~~~~~~~~~~~i~ 201 (324)
T cd08292 136 GVKPGQWLIQNAAGGAVGKLVAMLAAARG--INVINLVRRDAGVAELRA-L---GI------G--PVVSTEQPGWQDKVR 201 (324)
T ss_pred CCCCCCEEEEcccccHHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHh-c---CC------C--EEEcCCCchHHHHHH
Confidence 4788999999886 3 3788888888876 467777666665555543 1 21 1 111111100
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|+|+....- .......+.|+++|+++.
T Consensus 202 ~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~v~ 236 (324)
T cd08292 202 EAAGGAPISVALDSVGG-KLAGELLSLLGEGGTLVS 236 (324)
T ss_pred HHhCCCCCcEEEECCCC-hhHHHHHHhhcCCcEEEE
Confidence 01122469999876554 355778899999999886
No 423
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=82.11 E-value=23 Score=32.13 Aligned_cols=93 Identities=22% Similarity=0.264 Sum_probs=60.1
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC------C
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR------K 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~------~ 219 (298)
.+.++.+||-.|. | .|..+..+++..| .++++++.+++..+.+++.+.. . .++..... .
T Consensus 142 ~~~~~~~vlI~g~~g~ig~~~~~~a~~~G--~~vi~~~~~~~~~~~~~~~~g~---------~--~~~~~~~~~~~~~v~ 208 (329)
T cd05288 142 KPKPGETVVVSAAAGAVGSVVGQIAKLLG--ARVVGIAGSDEKCRWLVEELGF---------D--AAINYKTPDLAEALK 208 (329)
T ss_pred CCCCCCEEEEecCcchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHhhcCC---------c--eEEecCChhHHHHHH
Confidence 3677899999984 3 3778888888765 5899999888877776543211 1 11111100 0
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.... +.+|+++.... ....+...+.|+++|+++.
T Consensus 209 ~~~~-~~~d~vi~~~g-~~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 209 EAAP-DGIDVYFDNVG-GEILDAALTLLNKGGRIAL 242 (329)
T ss_pred Hhcc-CCceEEEEcch-HHHHHHHHHhcCCCceEEE
Confidence 0112 46898886544 3566788899999999875
No 424
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=82.03 E-value=22 Score=32.07 Aligned_cols=94 Identities=22% Similarity=0.198 Sum_probs=61.1
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.++++.+||-.|+ | .|..+..+++..| .++++++.+++..+.+++ .+. . .++......
T Consensus 139 ~~~~~~~vlI~g~~~~~g~~~~~la~~~g--~~v~~~~~~~~~~~~~~~----~g~------~--~~~~~~~~~~~~~~~ 204 (324)
T cd08244 139 TLTPGDVVLVTAAAGGLGSLLVQLAKAAG--ATVVGAAGGPAKTALVRA----LGA------D--VAVDYTRPDWPDQVR 204 (324)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCC------C--EEEecCCccHHHHHH
Confidence 4678899999985 3 3778888888865 579999988887776643 111 1 111111100
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
.......+|+++....-. ..+...+.|+++|+++..
T Consensus 205 ~~~~~~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~~ 240 (324)
T cd08244 205 EALGGGGVTVVLDGVGGA-IGRAALALLAPGGRFLTY 240 (324)
T ss_pred HHcCCCCceEEEECCChH-hHHHHHHHhccCcEEEEE
Confidence 011224699998765544 347788999999998863
No 425
>PRK07806 short chain dehydrogenase; Provisional
Probab=81.94 E-value=28 Score=30.21 Aligned_cols=97 Identities=24% Similarity=0.238 Sum_probs=53.1
Q ss_pred CCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCH-HHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--------
Q 022372 152 GMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIP-ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 221 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~-~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-------- 221 (298)
+.++|-.|+.+ .++..+++.+ ..+.+|+++..+. ...+...+.++..+ .++.++.+|..+..
T Consensus 6 ~k~vlItGasg-giG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~-------~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 6 GKTALVTGSSR-GIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG-------GRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CcEEEEECCCC-cHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC-------CceEEEEcCCCCHHHHHHHHHH
Confidence 56899888654 4455454433 2235788887654 23333333333211 35677788876521
Q ss_pred --CCCCCccEEEECCCCc-------------------hhHHHHHhccccCcEEEEE
Q 022372 222 --PEFAPYDAIHVGAAAP-------------------EIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~~-------------------~l~~~l~~~LkpGG~Lvi~ 256 (298)
...+..|.++.++... .+.+.+.+.++.+|++++.
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 78 AREEFGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred HHHhCCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 0113578877666421 2335566666667777763
No 426
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=81.88 E-value=0.91 Score=40.30 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
|-+...+++.|. ..+|...+|.--|.|..+..+.+.. ++.+++++|.+|.+...|+....+.-. +++..+.
T Consensus 29 PVm~devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~el~~------~~l~a~L 99 (303)
T KOG2782|consen 29 PVMLDEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSDELMH------PTLKAVL 99 (303)
T ss_pred ceehhhHHHHcC--CCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhHhhcc------hhHHHHH
Confidence 456778888887 7789999999999999999888884 668999999999998888766643211 2222233
Q ss_pred cCCCC--------CCCCCCCccEEEECCCCc
Q 022372 215 GDGRK--------GWPEFAPYDAIHVGAAAP 237 (298)
Q Consensus 215 gD~~~--------~~~~~~~fD~Ii~~~~~~ 237 (298)
+.+.. +.. +..+|-|+.+....
T Consensus 100 g~Fs~~~~l~~~~gl~-~~~vDGiLmDlGcS 129 (303)
T KOG2782|consen 100 GNFSYIKSLIADTGLL-DVGVDGILMDLGCS 129 (303)
T ss_pred hhhHHHHHHHHHhCCC-cCCcceEEeecCcc
Confidence 33221 222 36788888777653
No 427
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=81.87 E-value=8.8 Score=34.92 Aligned_cols=95 Identities=15% Similarity=0.149 Sum_probs=58.3
Q ss_pred CCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 151 PGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 151 ~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++.+||-.|+ |. |..+..+|+..| .+|+.++.+++..+.+++ + +....+..... ..+...... ...+|
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~~~v~~~~~~---~~~~~~~~~-~~~~d 215 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLG--YEVVASTGKADAADYLKK-L---GAKEVIPREEL---QEESIKPLE-KQRWA 215 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCC--CeEEEEecCHHHHHHHHH-c---CCCEEEcchhH---HHHHHHhhc-cCCcC
Confidence 4679999997 44 777788888765 479999988887776643 1 21100000000 000000111 24589
Q ss_pred EEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 229 AIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 229 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
+|+....- ...+...+.|+++|+++..
T Consensus 216 ~vld~~g~-~~~~~~~~~l~~~G~~i~~ 242 (326)
T cd08289 216 GAVDPVGG-KTLAYLLSTLQYGGSVAVS 242 (326)
T ss_pred EEEECCcH-HHHHHHHHHhhcCCEEEEE
Confidence 98865544 5667889999999999873
No 428
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=80.08 E-value=12 Score=40.54 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=23.1
Q ss_pred CCCCEEEEEcCCCcHHH-HHHHHHcCCCcEEEEEeCC
Q 022372 150 KPGMHALDIGSGTGYLT-ACFALMVGPQGRAVGVEHI 185 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~~t-~~La~~~g~~~~V~giD~s 185 (298)
..+.+|+-||.|.+.++ ++.+...| .+|+.+|-.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~G--h~Vtv~E~~ 415 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGL 415 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCC--CeEEEEccc
Confidence 35789999999985443 43333323 689999953
No 429
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=79.89 E-value=19 Score=32.34 Aligned_cols=88 Identities=23% Similarity=0.315 Sum_probs=58.8
Q ss_pred CCCEEEEEcCC--CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCcc
Q 022372 151 PGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYD 228 (298)
Q Consensus 151 ~g~~VLDiG~G--sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD 228 (298)
++.+||-.|++ .|..+..+++..| .++++++.+++..+.+++ + +. ..+ +...+ + ... +.+|
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~------~~~-~~~~~--~-~~~-~~~d 194 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAG--AHVVAVVGSPARAEGLRE-L---GA------AEV-VVGGS--E-LSG-APVD 194 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-c---CC------cEE-Eeccc--c-ccC-CCce
Confidence 58999999983 3777777888765 579999988887777754 2 11 111 11111 1 112 4689
Q ss_pred EEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 229 AIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 229 ~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
+++....- .......+.|+++|+++..
T Consensus 195 ~vl~~~g~-~~~~~~~~~l~~~G~~v~~ 221 (305)
T cd08270 195 LVVDSVGG-PQLARALELLAPGGTVVSV 221 (305)
T ss_pred EEEECCCc-HHHHHHHHHhcCCCEEEEE
Confidence 99876554 4567789999999999863
No 430
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=79.77 E-value=18 Score=35.05 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCC-CcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGP-QGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH 213 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~-~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~ 213 (298)
+.....+...+........+++-+|+| ..+..+++.+.. +..|+.+|.+++.++..++.. ..+.++
T Consensus 214 ~~~l~~~~~~~~~~~~~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----------~~~~~i 280 (453)
T PRK09496 214 REHIRAVMSEFGRLEKPVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----------PNTLVL 280 (453)
T ss_pred HHHHHHHHHHhCccCCCCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----------CCCeEE
Confidence 334455555554333345789999885 455555554422 358999999999888776542 245678
Q ss_pred EcCCCCCC----CCCCCccEEEECCC
Q 022372 214 VGDGRKGW----PEFAPYDAIHVGAA 235 (298)
Q Consensus 214 ~gD~~~~~----~~~~~fD~Ii~~~~ 235 (298)
.||..+.. ..-..+|.|++...
T Consensus 281 ~gd~~~~~~L~~~~~~~a~~vi~~~~ 306 (453)
T PRK09496 281 HGDGTDQELLEEEGIDEADAFIALTN 306 (453)
T ss_pred ECCCCCHHHHHhcCCccCCEEEECCC
Confidence 88886421 12246788876654
No 431
>PRK08618 ornithine cyclodeaminase; Validated
Probab=79.47 E-value=17 Score=34.06 Aligned_cols=103 Identities=17% Similarity=0.085 Sum_probs=59.0
Q ss_pred HHHHHHccCCCCCEEEEEcCCC-cHHHH-HHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEE-EcCC
Q 022372 141 CLQLLEENLKPGMHALDIGSGT-GYLTA-CFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVH-VGDG 217 (298)
Q Consensus 141 ~l~~L~~~l~~g~~VLDiG~Gs-G~~t~-~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~-~gD~ 217 (298)
....|. .+...++.-+|||. |...+ .++.. .+-.+|..++.+++..+...+.+... ..+.+. ..|.
T Consensus 118 a~~~la--~~~~~~v~iiGaG~~a~~~~~al~~~-~~~~~v~v~~r~~~~a~~~~~~~~~~--------~~~~~~~~~~~ 186 (325)
T PRK08618 118 ATKYLA--REDAKTLCLIGTGGQAKGQLEAVLAV-RDIERVRVYSRTFEKAYAFAQEIQSK--------FNTEIYVVNSA 186 (325)
T ss_pred HHHHhc--CCCCcEEEEECCcHHHHHHHHHHHhc-CCccEEEEECCCHHHHHHHHHHHHHh--------cCCcEEEeCCH
Confidence 345554 34457899999996 54433 33333 23368999999998877666655432 112222 2222
Q ss_pred CCCCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEECCC
Q 022372 218 RKGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 218 ~~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
.+.. ...|+|++.-+..+..-. +.||| |..|..+|..
T Consensus 187 ~~~~---~~aDiVi~aT~s~~p~i~--~~l~~-G~hV~~iGs~ 223 (325)
T PRK08618 187 DEAI---EEADIIVTVTNAKTPVFS--EKLKK-GVHINAVGSF 223 (325)
T ss_pred HHHH---hcCCEEEEccCCCCcchH--HhcCC-CcEEEecCCC
Confidence 2111 357999877665543222 77888 5556667653
No 432
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=79.32 E-value=43 Score=30.26 Aligned_cols=96 Identities=14% Similarity=0.035 Sum_probs=59.5
Q ss_pred cCCCCCEEEEEcCC--CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcC-CCC---CC
Q 022372 148 NLKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGD-GRK---GW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~G--sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD-~~~---~~ 221 (298)
.+.++.+||-.|++ .|..+..+++..| .+++.+..+++..+.+++ + +.. .-+.....+ ... ..
T Consensus 137 ~~~~~~~vlI~ga~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~~-----~~~~~~~~~~~~~~~~~~ 205 (334)
T PTZ00354 137 DVKKGQSVLIHAGASGVGTAAAQLAEKYG--AATIITTSSEEKVDFCKK-L---AAI-----ILIRYPDEEGFAPKVKKL 205 (334)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-c---CCc-----EEEecCChhHHHHHHHHH
Confidence 46788999999853 4788888888765 466678888887777643 2 110 001110111 000 01
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.....+|+++.... ........+.|+++|+++.
T Consensus 206 ~~~~~~d~~i~~~~-~~~~~~~~~~l~~~g~~i~ 238 (334)
T PTZ00354 206 TGEKGVNLVLDCVG-GSYLSETAEVLAVDGKWIV 238 (334)
T ss_pred hCCCCceEEEECCc-hHHHHHHHHHhccCCeEEE
Confidence 12246899987654 4566778899999999886
No 433
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=79.25 E-value=39 Score=30.05 Aligned_cols=93 Identities=19% Similarity=0.243 Sum_probs=58.7
Q ss_pred cCCCCCEEEEEcCC--CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGSG--TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~G--sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+.++.+||..|+. .|..+..+++..| .+|+.++.+++..+.+++. +. .. ++......
T Consensus 136 ~~~~~~~vli~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~----g~------~~--~~~~~~~~~~~~i~ 201 (323)
T cd08241 136 RLQPGETVLVLGAAGGVGLAAVQLAKALG--ARVIAAASSEEKLALARAL----GA------DH--VIDYRDPDLRERVK 201 (323)
T ss_pred CCCCCCEEEEEcCCchHHHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHc----CC------ce--eeecCCccHHHHHH
Confidence 46788999999982 3667777777654 5799999888877766431 11 11 11111100
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|.++....- .....+.+.++++|+++.
T Consensus 202 ~~~~~~~~d~v~~~~g~-~~~~~~~~~~~~~g~~v~ 236 (323)
T cd08241 202 ALTGGRGVDVVYDPVGG-DVFEASLRSLAWGGRLLV 236 (323)
T ss_pred HHcCCCCcEEEEECccH-HHHHHHHHhhccCCEEEE
Confidence 01122458998876544 455677889999999875
No 434
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=79.22 E-value=7 Score=28.80 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=22.6
Q ss_pred CCCCEEEEEcCCCcH-HHHHHHHHcCCCcEEEEEeCC
Q 022372 150 KPGMHALDIGSGTGY-LTACFALMVGPQGRAVGVEHI 185 (298)
Q Consensus 150 ~~g~~VLDiG~GsG~-~t~~La~~~g~~~~V~giD~s 185 (298)
...++||-+|+.+|| ++..++..++.+...+++-+.
T Consensus 37 ~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~fE 73 (78)
T PF12242_consen 37 NGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSFE 73 (78)
T ss_dssp TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE--
T ss_pred CCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEeec
Confidence 334799999999998 555566666666778887654
No 435
>PRK13699 putative methylase; Provisional
Probab=78.85 E-value=2.4 Score=37.76 Aligned_cols=20 Identities=25% Similarity=0.164 Sum_probs=15.8
Q ss_pred hHHHHHhccccCcEEEEEEC
Q 022372 239 IPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 239 l~~~l~~~LkpGG~Lvi~v~ 258 (298)
...++.++|||||.+++..+
T Consensus 54 ~l~E~~RVLKpgg~l~if~~ 73 (227)
T PRK13699 54 ACNEMYRVLKKDALMVSFYG 73 (227)
T ss_pred HHHHHHHHcCCCCEEEEEec
Confidence 44778899999999987543
No 436
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=78.52 E-value=16 Score=33.31 Aligned_cols=96 Identities=21% Similarity=0.230 Sum_probs=55.2
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CC
Q 022372 148 NLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVE--HIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD--~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~ 221 (298)
.++++.+||-.|+|. |..+..+++..+ .+|+.+. -+++..+.+++ .+. ..+.....+... ..
T Consensus 161 ~~~~g~~vlI~g~g~~g~~~~~la~~~G--~~v~~~~~~~~~~~~~~~~~----~g~------~~~~~~~~~~~~~l~~~ 228 (306)
T cd08258 161 GIRPGDTVVVFGPGPIGLLAAQVAKLQG--ATVVVVGTEKDEVRLDVAKE----LGA------DAVNGGEEDLAELVNEI 228 (306)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHH----hCC------cccCCCcCCHHHHHHHH
Confidence 367888998877653 667777787765 4676653 33334444332 121 111000111000 01
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.....+|.++.............+.|+++|+++.
T Consensus 229 ~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~ 262 (306)
T cd08258 229 TDGDGADVVIECSGAVPALEQALELLRKGGRIVQ 262 (306)
T ss_pred cCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEE
Confidence 1224689998876555677788899999999886
No 437
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=78.00 E-value=5.7 Score=38.31 Aligned_cols=73 Identities=22% Similarity=0.178 Sum_probs=47.9
Q ss_pred CEEEEEcCCC-cHHHHHH-HHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC---CCCCc
Q 022372 153 MHALDIGSGT-GYLTACF-ALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP---EFAPY 227 (298)
Q Consensus 153 ~~VLDiG~Gs-G~~t~~L-a~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~---~~~~f 227 (298)
++||-+|||. |...+.. ++. +. .+|+..|.+.+..+++..... .+++.+.-|+.+... --..+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~-~d-~~V~iAdRs~~~~~~i~~~~~----------~~v~~~~vD~~d~~al~~li~~~ 69 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQN-GD-GEVTIADRSKEKCARIAELIG----------GKVEALQVDAADVDALVALIKDF 69 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhC-CC-ceEEEEeCCHHHHHHHHhhcc----------ccceeEEecccChHHHHHHHhcC
Confidence 5799999965 4444333 332 22 699999999998888865532 367778778765311 11356
Q ss_pred cEEEECCCCc
Q 022372 228 DAIHVGAAAP 237 (298)
Q Consensus 228 D~Ii~~~~~~ 237 (298)
|+|+...+..
T Consensus 70 d~VIn~~p~~ 79 (389)
T COG1748 70 DLVINAAPPF 79 (389)
T ss_pred CEEEEeCCch
Confidence 9888877653
No 438
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=77.88 E-value=1.8 Score=41.98 Aligned_cols=67 Identities=19% Similarity=0.142 Sum_probs=55.3
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC
Q 022372 148 NLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW 221 (298)
Q Consensus 148 ~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~ 221 (298)
..++|..|-|+-||-|-+++.+++.. .+|++-|.++++++..+.++..+... ..+++.+..|+.+.+
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~---crV~aNDLNpesik~Lk~ni~lNkv~----~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKG---CRVYANDLNPESIKWLKANIKLNKVD----PSAIEIFNMDAKDFL 312 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcC---cEEEecCCCHHHHHHHHHhccccccc----hhheeeecccHHHHh
Confidence 36889999999999999999999874 79999999999999999998776543 244777777765543
No 439
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=77.64 E-value=18 Score=33.48 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=54.3
Q ss_pred CEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 153 MHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 153 ~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
++|+-+|+|. |+++..|++. | ..|+.++..++.++..+++ .++. ................ ....++||+|
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G--~~V~lv~r~~~~~~~i~~~---~Gl~-i~~~g~~~~~~~~~~~-~~~~~~~D~v 74 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-G--LPVRLILRDRQRLAAYQQA---GGLT-LVEQGQASLYAIPAET-ADAAEPIHRL 74 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-C--CCeEEEEechHHHHHHhhc---CCeE-EeeCCcceeeccCCCC-cccccccCEE
Confidence 5799999997 5677777765 3 4799999887666555432 1110 0000111111111111 1123579999
Q ss_pred EECCCC---chhHHHHHhccccCcEEEEEECCC
Q 022372 231 HVGAAA---PEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 231 i~~~~~---~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
++.-=. ....+.+...+.++..++ ++-|+
T Consensus 75 iv~vK~~~~~~al~~l~~~l~~~t~vv-~lQNG 106 (305)
T PRK05708 75 LLACKAYDAEPAVASLAHRLAPGAELL-LLQNG 106 (305)
T ss_pred EEECCHHhHHHHHHHHHhhCCCCCEEE-EEeCC
Confidence 776543 344466777788877544 45443
No 440
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=77.54 E-value=4.1 Score=31.48 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=52.4
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEEC
Q 022372 154 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVG 233 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~ 233 (298)
+|| +-||+|..|..+++.+ ++.+++.+. ++++......+.......||+|+.+
T Consensus 2 ~Il-l~C~~GaSSs~la~km-------------------~~~a~~~gi-------~~~i~a~~~~e~~~~~~~~Dvill~ 54 (99)
T cd05565 2 NVL-VLCAGGGTSGLLANAL-------------------NKGAKERGV-------PLEAAAGAYGSHYDMIPDYDLVILA 54 (99)
T ss_pred EEE-EECCCCCCHHHHHHHH-------------------HHHHHHCCC-------cEEEEEeeHHHHHHhccCCCEEEEc
Confidence 355 4578888777777765 233344332 3555555544432233568999999
Q ss_pred CCCchhHHHHHhccccCcEEEEEEC
Q 022372 234 AAAPEIPQALIDQLKPGGRMVIPVG 258 (298)
Q Consensus 234 ~~~~~l~~~l~~~LkpGG~Lvi~v~ 258 (298)
+-.....+++.+.+.+.|.-+..+.
T Consensus 55 PQv~~~~~~i~~~~~~~~ipv~~I~ 79 (99)
T cd05565 55 PQMASYYDELKKDTDRLGIKLVTTT 79 (99)
T ss_pred ChHHHHHHHHHHHhhhcCCCEEEeC
Confidence 9999999999999999888776655
No 441
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=77.20 E-value=29 Score=31.45 Aligned_cols=94 Identities=18% Similarity=0.224 Sum_probs=56.1
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~ 225 (298)
.+.++.+|+-.|+ | .|..+..+++..+ .+|+++.. +...+.+++ + +.. .+...+-.+... .... +
T Consensus 136 ~~~~g~~vlI~g~~g~ig~~~~~~a~~~g--~~v~~~~~-~~~~~~~~~-~---g~~-~~~~~~~~~~~~----~~~~-~ 202 (331)
T cd08273 136 KVLTGQRVLIHGASGGVGQALLELALLAG--AEVYGTAS-ERNHAALRE-L---GAT-PIDYRTKDWLPA----MLTP-G 202 (331)
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHcC--CEEEEEeC-HHHHHHHHH-c---CCe-EEcCCCcchhhh----hccC-C
Confidence 3778899999996 3 3677777888765 57888875 665555532 1 110 000000000000 0111 4
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.+|+++....-.. .....+.|+++|+++.
T Consensus 203 ~~d~vl~~~~~~~-~~~~~~~l~~~g~~v~ 231 (331)
T cd08273 203 GVDVVFDGVGGES-YEESYAALAPGGTLVC 231 (331)
T ss_pred CceEEEECCchHH-HHHHHHHhcCCCEEEE
Confidence 6899987655444 6778899999999876
No 442
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=77.17 E-value=27 Score=31.30 Aligned_cols=95 Identities=24% Similarity=0.260 Sum_probs=52.7
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~ 225 (298)
.+.++.+|+..|+ | .|..+..+++..| .++++++.+ +..+.++ +.+....+......+. .......
T Consensus 140 ~~~~g~~vli~g~~g~~g~~~~~la~~~g--~~v~~~~~~-~~~~~~~----~~g~~~~~~~~~~~~~-----~~~~~~~ 207 (319)
T cd08267 140 KVKPGQRVLINGASGGVGTFAVQIAKALG--AHVTGVCST-RNAELVR----SLGADEVIDYTTEDFV-----ALTAGGE 207 (319)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CEEEEEeCH-HHHHHHH----HcCCCEeecCCCCCcc-----hhccCCC
Confidence 3678899999997 3 4778888888765 478888743 4444442 2221100110110110 1112224
Q ss_pred CccEEEECCCCc--hhHHHHHhccccCcEEEE
Q 022372 226 PYDAIHVGAAAP--EIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 226 ~fD~Ii~~~~~~--~l~~~l~~~LkpGG~Lvi 255 (298)
.+|+++...... ..... ...|+++|+++.
T Consensus 208 ~~d~vi~~~~~~~~~~~~~-~~~l~~~g~~i~ 238 (319)
T cd08267 208 KYDVIFDAVGNSPFSLYRA-SLALKPGGRYVS 238 (319)
T ss_pred CCcEEEECCCchHHHHHHh-hhccCCCCEEEE
Confidence 689998765421 22222 234999999986
No 443
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=76.79 E-value=7.7 Score=36.08 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=41.8
Q ss_pred HHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022372 143 QLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 199 (298)
Q Consensus 143 ~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~ 199 (298)
+.++ +.+|.+|.-+|+|.-....++++. | .+|.++|+++..++..+-++...
T Consensus 57 eam~--~g~ghrivtigSGGcn~L~ylsr~--P-a~id~VDlN~ahiAln~lklaA~ 108 (414)
T COG5379 57 EAMQ--LGIGHRIVTIGSGGCNMLAYLSRA--P-ARIDVVDLNPAHIALNRLKLAAF 108 (414)
T ss_pred HHHh--cCCCcEEEEecCCcchHHHHhhcC--C-ceeEEEeCCHHHHHHHHHHHHHH
Confidence 3444 788899999999987788888874 4 69999999999998877666553
No 444
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=76.31 E-value=2.3 Score=36.07 Aligned_cols=88 Identities=20% Similarity=0.205 Sum_probs=53.7
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
.|.+|.-+|+|. |...+.+++.+| .+|++.|.+........ . ..+.. .+..+.+ ...|+
T Consensus 35 ~g~tvgIiG~G~IG~~vA~~l~~fG--~~V~~~d~~~~~~~~~~----~---------~~~~~--~~l~ell---~~aDi 94 (178)
T PF02826_consen 35 RGKTVGIIGYGRIGRAVARRLKAFG--MRVIGYDRSPKPEEGAD----E---------FGVEY--VSLDELL---AQADI 94 (178)
T ss_dssp TTSEEEEESTSHHHHHHHHHHHHTT---EEEEEESSCHHHHHHH----H---------TTEEE--SSHHHHH---HH-SE
T ss_pred CCCEEEEEEEcCCcCeEeeeeecCC--ceeEEecccCChhhhcc----c---------cccee--eehhhhc---chhhh
Confidence 478999999987 777777777665 69999999987655111 1 12222 1221111 24688
Q ss_pred EEECCCCc----h-hHHHHHhccccCcEEEEEECC
Q 022372 230 IHVGAAAP----E-IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 230 Ii~~~~~~----~-l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|++..++. + +-++.++.+|+|.++| .++.
T Consensus 95 v~~~~plt~~T~~li~~~~l~~mk~ga~lv-N~aR 128 (178)
T PF02826_consen 95 VSLHLPLTPETRGLINAEFLAKMKPGAVLV-NVAR 128 (178)
T ss_dssp EEE-SSSSTTTTTSBSHHHHHTSTTTEEEE-ESSS
T ss_pred hhhhhccccccceeeeeeeeeccccceEEE-eccc
Confidence 88777752 2 3378888999887655 3444
No 445
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.22 E-value=11 Score=30.04 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=57.3
Q ss_pred CEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccEE
Q 022372 153 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDAI 230 (298)
Q Consensus 153 ~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD~I 230 (298)
.+|.|+|-|. =+.+..|++. | ..|+++|+++. .|. ..++++..|..+.-.. -...|+|
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~-g--~dv~atDI~~~---~a~--------------~g~~~v~DDitnP~~~iY~~A~lI 74 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAER-G--FDVLATDINEK---TAP--------------EGLRFVVDDITNPNISIYEGADLI 74 (129)
T ss_pred CcEEEEccchHHHHHHHHHHc-C--CcEEEEecccc---cCc--------------ccceEEEccCCCccHHHhhCccce
Confidence 3899999887 3456666666 3 58999999876 111 3567888887764221 1357999
Q ss_pred EECCCCchhHHHHHhccc-cCcEEEE
Q 022372 231 HVGAAAPEIPQALIDQLK-PGGRMVI 255 (298)
Q Consensus 231 i~~~~~~~l~~~l~~~Lk-pGG~Lvi 255 (298)
++.-+.+++...+.++-+ -|..+++
T Consensus 75 YSiRpppEl~~~ildva~aVga~l~I 100 (129)
T COG1255 75 YSIRPPPELQSAILDVAKAVGAPLYI 100 (129)
T ss_pred eecCCCHHHHHHHHHHHHhhCCCEEE
Confidence 999999999888777654 3555554
No 446
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=76.17 E-value=17 Score=33.72 Aligned_cols=95 Identities=16% Similarity=0.146 Sum_probs=53.7
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCCCCCCCCCCc
Q 022372 150 KPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGRKGWPEFAPY 227 (298)
Q Consensus 150 ~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g-D~~~~~~~~~~f 227 (298)
.++.+|+-+|+|. |...+......+ ..+|+.++.+++..+...+.+ + . ..... +..+. ...+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~---g-------~--~~~~~~~~~~~---l~~a 239 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKEL---G-------G--NAVPLDELLEL---LNEA 239 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHc---C-------C--eEEeHHHHHHH---HhcC
Confidence 3688999999976 655444443322 257999999987653332222 1 1 12211 11111 1347
Q ss_pred cEEEECCCCchh---HHHHHhccccCcEEEEEECCC
Q 022372 228 DAIHVGAAAPEI---PQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 228 D~Ii~~~~~~~l---~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
|+|+...+.++. ...+.+..+.+|.+++-+..+
T Consensus 240 DvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 240 DVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred CEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCC
Confidence 999998887665 333333333367888866654
No 447
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=76.10 E-value=30 Score=32.88 Aligned_cols=102 Identities=21% Similarity=0.228 Sum_probs=59.8
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCC------EEEE-EcCC-
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGS------LSVH-VGDG- 217 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~------v~~~-~gD~- 217 (298)
.+.++.+||-.|+ |. |..+..+++..| .+++.++.+++..+.+++ + +....+.... +... ..+.
T Consensus 186 ~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G--~~vi~~~~~~~~~~~~~~-~---g~~~~v~~~~~~~~~~~~~~~~~~~~ 259 (398)
T TIGR01751 186 TVKPGDNVLIWGAAGGLGSYATQLARAGG--GNPVAVVSSPEKAEYCRE-L---GAEAVIDRNDFGHWGRLPDLNTQAPK 259 (398)
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHHH-c---CCCEEecCCCcchhhccccccccccc
Confidence 3678899999997 33 777788888765 567888888877666654 2 2110010000 0000 0000
Q ss_pred ---C---------CCCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 218 ---R---------KGWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 218 ---~---------~~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
. ........+|+++..... .......+.|+++|+++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~-~~~~~~~~~l~~~G~~v~~ 309 (398)
T TIGR01751 260 EWTKSFKRFGKRIRELTGGEDPDIVFEHPGR-ATFPTSVFVCRRGGMVVIC 309 (398)
T ss_pred hhhhcchhHHHHHHHHcCCCCceEEEECCcH-HHHHHHHHhhccCCEEEEE
Confidence 0 000112458988876553 4566788999999998873
No 448
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.06 E-value=15 Score=31.82 Aligned_cols=77 Identities=8% Similarity=0.016 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-------- 221 (298)
++.++|-.|++ |.++..+++.+ ..+.+|+.++.++..++.+.+.+...+ .++.++..|..+..
T Consensus 4 ~~~~~lItG~~-g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~ 75 (253)
T PRK08217 4 KDKVIVITGGA-QGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG-------TEVRGYAANVTDEEDVEATFAQ 75 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CceEEEEcCCCCHHHHHHHHHH
Confidence 35789988864 44444444433 223589999999877766655554322 46777888876421
Q ss_pred --CCCCCccEEEECCC
Q 022372 222 --PEFAPYDAIHVGAA 235 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~ 235 (298)
...+++|.|+.++.
T Consensus 76 ~~~~~~~id~vi~~ag 91 (253)
T PRK08217 76 IAEDFGQLNGLINNAG 91 (253)
T ss_pred HHHHcCCCCEEEECCC
Confidence 01146799988765
No 449
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=75.86 E-value=3 Score=38.20 Aligned_cols=68 Identities=21% Similarity=0.116 Sum_probs=48.0
Q ss_pred EEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC-C-CccEEE
Q 022372 154 HALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF-A-PYDAIH 231 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~-~-~fD~Ii 231 (298)
+|+|+-||.|.++.-+.+.. - ..+.++|+++.+.+.-+.|. + ....+|..+..... . .+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag-~-~~~~a~e~~~~a~~~y~~N~-----------~--~~~~~Di~~~~~~~l~~~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG-F-EVVWAVEIDPDACETYKANF-----------P--EVICGDITEIDPSDLPKDVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT-E-EEEEEEESSHHHHHHHHHHH-----------T--EEEESHGGGCHHHHHHHT-SEEE
T ss_pred cEEEEccCccHHHHHHHhcC-c-EEEEEeecCHHHHHhhhhcc-----------c--ccccccccccccccccccceEEE
Confidence 78999999999999988873 2 47899999999888887775 3 66777877543110 1 489998
Q ss_pred ECCCC
Q 022372 232 VGAAA 236 (298)
Q Consensus 232 ~~~~~ 236 (298)
.+.++
T Consensus 67 ggpPC 71 (335)
T PF00145_consen 67 GGPPC 71 (335)
T ss_dssp EE---
T ss_pred eccCC
Confidence 88875
No 450
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=75.83 E-value=7.4 Score=35.89 Aligned_cols=89 Identities=18% Similarity=0.182 Sum_probs=52.6
Q ss_pred CCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC---CCCCCCCC
Q 022372 151 PGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG---RKGWPEFA 225 (298)
Q Consensus 151 ~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~---~~~~~~~~ 225 (298)
+|.+||-.|. |. |..+..+++..| .+|+++..+ +..+.++ +.+.. .++.... .......+
T Consensus 162 ~g~~vlI~g~~g~ig~~~~~~a~~~G--~~v~~~~~~-~~~~~~~----~~g~~--------~~~~~~~~~~~~~l~~~~ 226 (350)
T cd08248 162 AGKRVLILGGSGGVGTFAIQLLKAWG--AHVTTTCST-DAIPLVK----SLGAD--------DVIDYNNEDFEEELTERG 226 (350)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCC--CeEEEEeCc-chHHHHH----HhCCc--------eEEECCChhHHHHHHhcC
Confidence 4899999984 43 777777888766 467776643 3223222 22211 1111110 00011124
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.+|+++...... ..+...+.|+++|+++.
T Consensus 227 ~vd~vi~~~g~~-~~~~~~~~l~~~G~~v~ 255 (350)
T cd08248 227 KFDVILDTVGGD-TEKWALKLLKKGGTYVT 255 (350)
T ss_pred CCCEEEECCChH-HHHHHHHHhccCCEEEE
Confidence 689999766544 66788999999999986
No 451
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=75.70 E-value=27 Score=31.85 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=57.4
Q ss_pred CCEEEEEcC--CCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE-cC-CCCCC--CCC
Q 022372 152 GMHALDIGS--GTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV-GD-GRKGW--PEF 224 (298)
Q Consensus 152 g~~VLDiG~--GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~-gD-~~~~~--~~~ 224 (298)
+.+||-.|+ +.|..+..+|+.. | .+|+++..+++..+.+++ + +. +. ++. .+ ..... ...
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G--~~vi~~~~~~~~~~~l~~-~---g~------~~--~~~~~~~~~~~i~~~~~ 214 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTG--LTVIATASRPESQEWVLE-L---GA------HH--VIDHSKPLKAQLEKLGL 214 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCC--CEEEEEcCcHHHHHHHHH-c---CC------CE--EEECCCCHHHHHHHhcC
Confidence 889999985 3477777888865 4 589999888877666642 2 21 11 111 11 00000 112
Q ss_pred CCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 225 APYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
+.+|+|+....-........+.|+++|+++..
T Consensus 215 ~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~ 246 (336)
T TIGR02817 215 EAVSYVFSLTHTDQHFKEIVELLAPQGRFALI 246 (336)
T ss_pred CCCCEEEEcCCcHHHHHHHHHHhccCCEEEEE
Confidence 46999986443445677889999999999864
No 452
>PRK07340 ornithine cyclodeaminase; Validated
Probab=75.48 E-value=18 Score=33.57 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=57.8
Q ss_pred HHHHHHHccCCCCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCC
Q 022372 140 TCLQLLEENLKPGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR 218 (298)
Q Consensus 140 ~~l~~L~~~l~~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~ 218 (298)
...+.|. -....+++-+|||. |...+.......+..++...+.+++..+...+++...+ +.+...+..
T Consensus 115 la~~~La--~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~---------~~~~~~~~~ 183 (304)
T PRK07340 115 LAARTLA--PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALG---------PTAEPLDGE 183 (304)
T ss_pred HHHHHhC--CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcC---------CeeEECCHH
Confidence 3445554 34557999999987 54443333222333589999999888777666654321 222222221
Q ss_pred CCCCCCCCccEEEECCCCch-hHHHHHhccccCcEEEEEECC
Q 022372 219 KGWPEFAPYDAIHVGAAAPE-IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 219 ~~~~~~~~fD~Ii~~~~~~~-l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+. -...|+|+..-+..+ +... .+||| ..+..+|.
T Consensus 184 ~a---v~~aDiVitaT~s~~Pl~~~---~~~~g-~hi~~iGs 218 (304)
T PRK07340 184 AI---PEAVDLVVTATTSRTPVYPE---AARAG-RLVVAVGA 218 (304)
T ss_pred HH---hhcCCEEEEccCCCCceeCc---cCCCC-CEEEecCC
Confidence 11 136899877665543 2232 36766 45666774
No 453
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=75.17 E-value=13 Score=33.78 Aligned_cols=58 Identities=26% Similarity=0.363 Sum_probs=45.1
Q ss_pred HHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHh
Q 022372 139 ATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKS 199 (298)
Q Consensus 139 ~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~ 199 (298)
+.+...+...-.+++.|||.=+|+|.......+. + ..++|+|++++.++.+.+++...
T Consensus 210 ~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~-~--r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 210 ALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNL-G--RRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred HHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHc-C--CceEEEecCHHHHHHHHHHHHhh
Confidence 3333333334678999999999999877666655 3 58999999999999999998764
No 454
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=75.11 E-value=56 Score=29.64 Aligned_cols=92 Identities=17% Similarity=0.197 Sum_probs=59.5
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+.++.+||-.|+ | .|..+..+++..+ .+++.++.+++..+.+++ + +. .. ++..+...
T Consensus 136 ~~~~~~~vlI~ga~g~ig~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~------~~--v~~~~~~~~~~~~~ 201 (329)
T cd08250 136 EMKSGETVLVTAAAGGTGQFAVQLAKLAG--CHVIGTCSSDEKAEFLKS-L---GC------DR--PINYKTEDLGEVLK 201 (329)
T ss_pred CCCCCCEEEEEeCccHHHHHHHHHHHHcC--CeEEEEeCcHHHHHHHHH-c---CC------ce--EEeCCCccHHHHHH
Confidence 4778999999985 3 3778888888765 578998888877666633 1 11 11 11111110
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.... ..+|+++....- .......+.|+++|+++.
T Consensus 202 ~~~~-~~vd~v~~~~g~-~~~~~~~~~l~~~g~~v~ 235 (329)
T cd08250 202 KEYP-KGVDVVYESVGG-EMFDTCVDNLALKGRLIV 235 (329)
T ss_pred HhcC-CCCeEEEECCcH-HHHHHHHHHhccCCeEEE
Confidence 0112 358999876553 566788899999999885
No 455
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=75.02 E-value=6.5 Score=36.67 Aligned_cols=68 Identities=21% Similarity=0.170 Sum_probs=46.3
Q ss_pred EEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCC-CCCCccEEEEC
Q 022372 155 ALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWP-EFAPYDAIHVG 233 (298)
Q Consensus 155 VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~-~~~~fD~Ii~~ 233 (298)
|+|+-||.|.++.-+.+. |- ..+.++|+++.+++.-+.|... .+..+|..+... +...+|+++.+
T Consensus 1 vidLF~G~GG~~~Gl~~a-G~-~~~~a~e~~~~a~~ty~~N~~~------------~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-GF-KCVFASEIDKYAQKTYEANFGN------------KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHc-CC-eEEEEEeCCHHHHHHHHHhCCC------------CCCccChhhhhhhhCCCcCEEEec
Confidence 589999999999888765 32 3567899999998888777521 233455544321 12357888777
Q ss_pred CCC
Q 022372 234 AAA 236 (298)
Q Consensus 234 ~~~ 236 (298)
.++
T Consensus 67 ~PC 69 (315)
T TIGR00675 67 FPC 69 (315)
T ss_pred CCC
Confidence 664
No 456
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=74.59 E-value=8.6 Score=35.09 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=53.6
Q ss_pred cCCCCCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCC
Q 022372 148 NLKPGMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFA 225 (298)
Q Consensus 148 ~l~~g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~ 225 (298)
.++++.+||-.|+ |. |..+..+|+..| .+++++... +.+ .+.+....+..... ...... .. +
T Consensus 159 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~G--~~v~~~~~~----~~~----~~~g~~~~~~~~~~---~~~l~~-~~--~ 222 (325)
T cd08264 159 GLGPGETVVVFGASGNTGIFAVQLAKMMG--AEVIAVSRK----DWL----KEFGADEVVDYDEV---EEKVKE-IT--K 222 (325)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHcC--CeEEEEeHH----HHH----HHhCCCeeecchHH---HHHHHH-Hh--C
Confidence 4788999999997 44 788888888765 467777521 222 22221100000000 000001 11 4
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.+|+|+....- .......+.|+++|+++.
T Consensus 223 ~~d~vl~~~g~-~~~~~~~~~l~~~g~~v~ 251 (325)
T cd08264 223 MADVVINSLGS-SFWDLSLSVLGRGGRLVT 251 (325)
T ss_pred CCCEEEECCCH-HHHHHHHHhhccCCEEEE
Confidence 58999875543 566788999999999986
No 457
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=74.54 E-value=8.8 Score=34.93 Aligned_cols=91 Identities=21% Similarity=0.161 Sum_probs=56.7
Q ss_pred CCCCC-EEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc-CCC---CCC
Q 022372 149 LKPGM-HALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG-DGR---KGW 221 (298)
Q Consensus 149 l~~g~-~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g-D~~---~~~ 221 (298)
+.++. +||-.|+ |. |..+..+++..| .+++.+..+++..+.+++ .+.. . ++.. +.. ...
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G--~~vi~~~~~~~~~~~~~~----~g~~------~--~~~~~~~~~~~~~~ 207 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLG--YEVVASTGKAEEEDYLKE----LGAS------E--VIDREDLSPPGKPL 207 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcC--CeEEEEeCCHHHHHHHHh----cCCc------E--EEccccHHHHHHHh
Confidence 66788 9999997 44 778888888875 467777767666555532 1211 1 1111 100 011
Q ss_pred CCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 222 PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 222 ~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.. +.+|.++-...- .......+.|+++|+++.
T Consensus 208 ~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~v~ 239 (323)
T TIGR02823 208 EK-ERWAGAVDTVGG-HTLANVLAQLKYGGAVAA 239 (323)
T ss_pred cC-CCceEEEECccH-HHHHHHHHHhCCCCEEEE
Confidence 11 248988776554 356778899999999986
No 458
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=74.15 E-value=24 Score=33.01 Aligned_cols=74 Identities=22% Similarity=0.189 Sum_probs=52.2
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCC--C-Ccc
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEF--A-PYD 228 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~--~-~fD 228 (298)
..+++|+-||.|.+..-+... |- .-+.++|+++.+++.-+.|... ..++..|........ . .+|
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-gf-~~~~a~Eid~~a~~ty~~n~~~-----------~~~~~~di~~~~~~~~~~~~~D 69 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-GF-EIVFANEIDPPAVATYKANFPH-----------GDIILGDIKELDGEALRKSDVD 69 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-CC-eEEEEEecCHHHHHHHHHhCCC-----------CceeechHhhcChhhccccCCC
Confidence 358999999999999888776 32 4788999999988887776531 344555555322211 1 689
Q ss_pred EEEECCCCch
Q 022372 229 AIHVGAAAPE 238 (298)
Q Consensus 229 ~Ii~~~~~~~ 238 (298)
+++.+.+++.
T Consensus 70 vligGpPCQ~ 79 (328)
T COG0270 70 VLIGGPPCQD 79 (328)
T ss_pred EEEeCCCCcc
Confidence 9999888643
No 459
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=74.06 E-value=8.6 Score=36.15 Aligned_cols=75 Identities=15% Similarity=0.089 Sum_probs=50.8
Q ss_pred EEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-------CCCCCcc
Q 022372 156 LDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------PEFAPYD 228 (298)
Q Consensus 156 LDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-------~~~~~fD 228 (298)
+|||+|.-.+-..+.... .+...+++|+++..+..|++|..++++. ..+.+++....... .....||
T Consensus 107 iDIgtgasci~~llg~rq-~n~~f~~teidd~s~~~a~snV~qn~ls-----s~ikvV~~~~~ktll~d~~~~~~e~~yd 180 (419)
T KOG2912|consen 107 IDIGTGASCIYPLLGARQ-NNWYFLATEIDDMSFNYAKSNVEQNNLS-----SLIKVVKVEPQKTLLMDALKEESEIIYD 180 (419)
T ss_pred eeccCchhhhHHhhhchh-ccceeeeeeccccccchhhccccccccc-----cceeeEEecchhhcchhhhccCccceee
Confidence 789888755444443332 2368899999999999999999988775 55666555322211 1124699
Q ss_pred EEEECCCC
Q 022372 229 AIHVGAAA 236 (298)
Q Consensus 229 ~Ii~~~~~ 236 (298)
.+.|+.++
T Consensus 181 FcMcNPPF 188 (419)
T KOG2912|consen 181 FCMCNPPF 188 (419)
T ss_pred EEecCCch
Confidence 99999875
No 460
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=73.94 E-value=16 Score=31.98 Aligned_cols=98 Identities=21% Similarity=0.182 Sum_probs=59.1
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCC
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~ 222 (298)
.+.++.+|+-.|. | .|..+..+++..+ .++++++.+++..+.+++ + +.. ...-+.....+... ...
T Consensus 101 ~~~~g~~vlv~g~~~~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~~---~~~~~~~~~~~~~~~~~~~~ 171 (288)
T smart00829 101 RLRPGESVLIHAAAGGVGQAAIQLAQHLG--AEVFATAGSPEKRDFLRE-L---GIP---DDHIFSSRDLSFADEILRAT 171 (288)
T ss_pred CCCCCCEEEEecCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH-c---CCC---hhheeeCCCccHHHHHHHHh
Confidence 3678899998884 3 3777777887765 579999999888777742 2 110 00001110001000 011
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
....+|.++.... ........+.|+++|+++.
T Consensus 172 ~~~~~d~vi~~~~-~~~~~~~~~~l~~~g~~v~ 203 (288)
T smart00829 172 GGRGVDVVLNSLA-GEFLDASLRCLAPGGRFVE 203 (288)
T ss_pred CCCCcEEEEeCCC-HHHHHHHHHhccCCcEEEE
Confidence 2235898886544 3556777899999999886
No 461
>PRK06194 hypothetical protein; Provisional
Probab=73.89 E-value=22 Score=31.78 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=47.5
Q ss_pred CCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---------
Q 022372 152 GMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--------- 221 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--------- 221 (298)
+.+||-.|++ |.++..+++.+ ..+.+|+.+|.+++.++...+.+...+ .++.++.+|..+..
T Consensus 6 ~k~vlVtGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~d~~~~~~~~~~~ 77 (287)
T PRK06194 6 GKVAVITGAA-SGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG-------AEVLGVRTDVSDAAQVEALADAA 77 (287)
T ss_pred CCEEEEeCCc-cHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC-------CeEEEEECCCCCHHHHHHHHHHH
Confidence 4688888765 44444444433 223589999998877666555443321 36777888887521
Q ss_pred -CCCCCccEEEECCCC
Q 022372 222 -PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 -~~~~~fD~Ii~~~~~ 236 (298)
...++.|+++.++..
T Consensus 78 ~~~~g~id~vi~~Ag~ 93 (287)
T PRK06194 78 LERFGAVHLLFNNAGV 93 (287)
T ss_pred HHHcCCCCEEEECCCC
Confidence 011357999888764
No 462
>PRK06701 short chain dehydrogenase; Provisional
Probab=73.86 E-value=33 Score=31.09 Aligned_cols=77 Identities=19% Similarity=0.093 Sum_probs=42.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHcC-CCcEEEEEeCCHH-HHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC-------
Q 022372 151 PGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPE-LVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~g-~~~~V~giD~s~~-~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------- 221 (298)
+++++|-.|+++ +++..+++.+. .+.+|+.++.++. ..+...+.+...+ .++.++..|..+..
T Consensus 45 ~~k~iLItGasg-gIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~~~~ 116 (290)
T PRK06701 45 KGKVALITGGDS-GIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG-------VKCLLIPGDVSDEAFCKDAVE 116 (290)
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC-------CeEEEEEccCCCHHHHHHHHH
Confidence 356899988655 44444444331 2357888877643 2333333333211 36778888876421
Q ss_pred ---CCCCCccEEEECCC
Q 022372 222 ---PEFAPYDAIHVGAA 235 (298)
Q Consensus 222 ---~~~~~fD~Ii~~~~ 235 (298)
...+..|+++.++.
T Consensus 117 ~i~~~~~~iD~lI~~Ag 133 (290)
T PRK06701 117 ETVRELGRLDILVNNAA 133 (290)
T ss_pred HHHHHcCCCCEEEECCc
Confidence 01135788876654
No 463
>PRK08265 short chain dehydrogenase; Provisional
Probab=73.68 E-value=33 Score=30.31 Aligned_cols=73 Identities=16% Similarity=0.096 Sum_probs=43.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---------
Q 022372 152 GMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--------- 221 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--------- 221 (298)
+.++|-.|+++ .++..+++.+ ..+.+|+.++.+++..+...+.+ + .++.++..|..+..
T Consensus 6 ~k~vlItGas~-gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~-------~~~~~~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 6 GKVAIVTGGAT-LIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G-------ERARFIATDITDDAAIERAVATV 74 (261)
T ss_pred CCEEEEECCCC-hHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C-------CeeEEEEecCCCHHHHHHHHHHH
Confidence 56888888654 4444444433 22358999999876554443322 1 35778888877521
Q ss_pred -CCCCCccEEEECCC
Q 022372 222 -PEFAPYDAIHVGAA 235 (298)
Q Consensus 222 -~~~~~fD~Ii~~~~ 235 (298)
...++.|.++.++.
T Consensus 75 ~~~~g~id~lv~~ag 89 (261)
T PRK08265 75 VARFGRVDILVNLAC 89 (261)
T ss_pred HHHhCCCCEEEECCC
Confidence 11246798887765
No 464
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=73.31 E-value=18 Score=33.24 Aligned_cols=90 Identities=19% Similarity=0.254 Sum_probs=50.1
Q ss_pred CEEEEEcCCC-cH-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 153 MHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 153 ~~VLDiG~Gs-G~-~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
.+|.-||+|. |. ++..+.+. +...+|+++|.+++..+.+++ .+. ... ...+..+. ....|+|
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~~~~~~a~~----~g~-------~~~-~~~~~~~~---~~~aDvV 70 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSAETRARARE----LGL-------GDR-VTTSAAEA---VKGADLV 70 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCHHHHHHHHh----CCC-------Cce-ecCCHHHH---hcCCCEE
Confidence 5789999886 33 33333332 322379999999987766643 111 001 11111111 1357999
Q ss_pred EECCCCch---hHHHHHhccccCcEEEEEECC
Q 022372 231 HVGAAAPE---IPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 231 i~~~~~~~---l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
+...+... +.+.+...+++|..++ .++.
T Consensus 71 iiavp~~~~~~v~~~l~~~l~~~~iv~-dvgs 101 (307)
T PRK07502 71 ILCVPVGASGAVAAEIAPHLKPGAIVT-DVGS 101 (307)
T ss_pred EECCCHHHHHHHHHHHHhhCCCCCEEE-eCcc
Confidence 88877643 3455666778877554 3443
No 465
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=73.30 E-value=16 Score=32.17 Aligned_cols=99 Identities=13% Similarity=0.062 Sum_probs=51.1
Q ss_pred CCEEEEEcCCC-cHH-HHHHHHHcCCCcEEEEEeC-------------------CHHHHHHHHHHHHHhccCCccCCCCE
Q 022372 152 GMHALDIGSGT-GYL-TACFALMVGPQGRAVGVEH-------------------IPELVVSSIQNIEKSAAAPLLKEGSL 210 (298)
Q Consensus 152 g~~VLDiG~Gs-G~~-t~~La~~~g~~~~V~giD~-------------------s~~~l~~A~~~~~~~~~~~~l~~~~v 210 (298)
+.+|+-+|||. |.. +..|++. |- ++++.+|. -...++.+++++++.... -++
T Consensus 21 ~~~VlivG~GglGs~va~~La~~-Gv-g~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~-----~~i 93 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAA-GV-GKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPD-----VEI 93 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC-CEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCC-----CEE
Confidence 46899999996 544 3444444 44 57777743 334556666666653211 234
Q ss_pred EEEEcCCCCC-C-CCCCCccEEEECCCCchhHHHHHhccccCcEEEEEE
Q 022372 211 SVHVGDGRKG-W-PEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 211 ~~~~gD~~~~-~-~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v 257 (298)
+.+....... . .....+|+|+....-......+.+..+..|.-++..
T Consensus 94 ~~~~~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~ 142 (228)
T cd00757 94 EAYNERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSG 142 (228)
T ss_pred EEecceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4443332110 0 011358999988765443333333333334444433
No 466
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=73.27 E-value=16 Score=31.99 Aligned_cols=84 Identities=17% Similarity=0.007 Sum_probs=56.3
Q ss_pred CCCCCEEEEEcCC-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCc
Q 022372 149 LKPGMHALDIGSG-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPY 227 (298)
Q Consensus 149 l~~g~~VLDiG~G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~f 227 (298)
...+.+||-+|+- +|..++ +++....+|+.+|+.|.+-.... ++++|..+ ..+ ..+.+
T Consensus 42 ~~E~~~vli~G~YltG~~~a---~~Ls~~~~vtv~Di~p~~r~~lp--------------~~v~Fr~~--~~~--~~G~~ 100 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTA---QMLSKADKVTVVDIHPFMRGFLP--------------NNVKFRNL--LKF--IRGEV 100 (254)
T ss_pred ccCcceEEEEEeeehhHHHH---HHhcccceEEEecCCHHHHhcCC--------------CCccHhhh--cCC--CCCce
Confidence 4567899999985 355444 44433479999999987633321 56776654 222 23679
Q ss_pred cEEEECCCCchhHHHHHhccccCcEE
Q 022372 228 DAIHVGAAAPEIPQALIDQLKPGGRM 253 (298)
Q Consensus 228 D~Ii~~~~~~~l~~~l~~~LkpGG~L 253 (298)
|+|+-.-.+-.+-.+..+.+.|+-.+
T Consensus 101 DlivDlTGlGG~~Pe~L~~fnp~vfi 126 (254)
T COG4017 101 DLIVDLTGLGGIEPEFLAKFNPKVFI 126 (254)
T ss_pred eEEEeccccCCCCHHHHhccCCceEE
Confidence 99998888877777777778886433
No 467
>PRK05854 short chain dehydrogenase; Provisional
Probab=73.20 E-value=31 Score=31.72 Aligned_cols=78 Identities=15% Similarity=0.089 Sum_probs=48.4
Q ss_pred CCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---------
Q 022372 152 GMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--------- 221 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--------- 221 (298)
+.++|-.|+++|. +..+++.+ ..+.+|+.+..+++..+.+.+.+.... +..++.++..|..+..
T Consensus 14 gk~~lITGas~GI-G~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~-----~~~~v~~~~~Dl~d~~sv~~~~~~~ 87 (313)
T PRK05854 14 GKRAVVTGASDGL-GLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAV-----PDAKLSLRALDLSSLASVAALGEQL 87 (313)
T ss_pred CCEEEEeCCCChH-HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC-----CCCceEEEEecCCCHHHHHHHHHHH
Confidence 5788888887654 33333322 223689999999887777666554321 1136788888876521
Q ss_pred -CCCCCccEEEECCC
Q 022372 222 -PEFAPYDAIHVGAA 235 (298)
Q Consensus 222 -~~~~~fD~Ii~~~~ 235 (298)
...++.|+++.++.
T Consensus 88 ~~~~~~iD~li~nAG 102 (313)
T PRK05854 88 RAEGRPIHLLINNAG 102 (313)
T ss_pred HHhCCCccEEEECCc
Confidence 11246899888765
No 468
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=73.02 E-value=44 Score=30.41 Aligned_cols=91 Identities=20% Similarity=0.220 Sum_probs=58.9
Q ss_pred CCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEc--CCCC--CCCCCC
Q 022372 152 GMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVG--DGRK--GWPEFA 225 (298)
Q Consensus 152 g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~g--D~~~--~~~~~~ 225 (298)
+.+||-.|. | .|..+..+++..|. .+|++++.+++..+.+++ + +. .. ++.. +... .....+
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~-~~v~~~~~~~~~~~~~~~-~---g~------~~--~~~~~~~~~~~i~~~~~~ 216 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTG-LTVIATASRPESIAWVKE-L---GA------DH--VINHHQDLAEQLEALGIE 216 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCC-cEEEEEcCChhhHHHHHh-c---CC------cE--EEeCCccHHHHHHhhCCC
Confidence 889999985 3 37777888887642 479999988887777643 1 11 11 1111 1000 001124
Q ss_pred CccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 226 PYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 226 ~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.+|+++....-......+.+.|+++|+++.
T Consensus 217 ~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~ 246 (336)
T cd08252 217 PVDYIFCLTDTDQHWDAMAELIAPQGHICL 246 (336)
T ss_pred CCCEEEEccCcHHHHHHHHHHhcCCCEEEE
Confidence 689998765545677888999999999987
No 469
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=72.99 E-value=25 Score=32.20 Aligned_cols=93 Identities=22% Similarity=0.194 Sum_probs=54.1
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCH----HHHHHHHHHHHHhccCCccCCCCEEEEEcCCC---
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIP----ELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGR--- 218 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~----~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~--- 218 (298)
.++++.+||-.|+ | .|..+..+|+..+ .+++.+..++ +..+.++ +.+. . .++.....
T Consensus 143 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~----~~g~------~--~~~~~~~~~~~ 208 (341)
T cd08290 143 KLQPGDWVIQNGANSAVGQAVIQLAKLLG--IKTINVVRDRPDLEELKERLK----ALGA------D--HVLTEEELRSL 208 (341)
T ss_pred ccCCCCEEEEccchhHHHHHHHHHHHHcC--CeEEEEEcCCCcchhHHHHHH----hcCC------C--EEEeCcccccc
Confidence 3678899999986 3 3788888888875 4555554443 3334432 2221 1 11111110
Q ss_pred C------CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEEE
Q 022372 219 K------GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIP 256 (298)
Q Consensus 219 ~------~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~ 256 (298)
. ..... .+|+|+....-. ......+.|+++|+++..
T Consensus 209 ~~~~~i~~~~~~-~~d~vld~~g~~-~~~~~~~~l~~~G~~v~~ 250 (341)
T cd08290 209 LATELLKSAPGG-RPKLALNCVGGK-SATELARLLSPGGTMVTY 250 (341)
T ss_pred cHHHHHHHHcCC-CceEEEECcCcH-hHHHHHHHhCCCCEEEEE
Confidence 0 01121 589998765543 345678999999998863
No 470
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=72.75 E-value=42 Score=30.50 Aligned_cols=93 Identities=17% Similarity=0.157 Sum_probs=59.1
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC------
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK------ 219 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~------ 219 (298)
.+.++.+|+-.|. | .|..+..+++..| .++++++.+++..+.+++ .+. . .++..+...
T Consensus 137 ~~~~g~~vlI~g~~g~ig~~~~~lak~~G--~~v~~~~~~~~~~~~~~~----~g~------~--~~~~~~~~~~~~~~~ 202 (327)
T PRK10754 137 EIKPDEQFLFHAAAGGVGLIACQWAKALG--AKLIGTVGSAQKAQRAKK----AGA------W--QVINYREENIVERVK 202 (327)
T ss_pred CCCCCCEEEEEeCCcHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----CCC------C--EEEcCCCCcHHHHHH
Confidence 4678899998863 3 3778888888876 578999988887766632 121 1 112111111
Q ss_pred CCCCCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 220 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 220 ~~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
.......+|+++.... ........+.|+++|+++.
T Consensus 203 ~~~~~~~~d~vl~~~~-~~~~~~~~~~l~~~g~~v~ 237 (327)
T PRK10754 203 EITGGKKVRVVYDSVG-KDTWEASLDCLQRRGLMVS 237 (327)
T ss_pred HHcCCCCeEEEEECCc-HHHHHHHHHHhccCCEEEE
Confidence 1112245898885433 3455678899999999986
No 471
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=72.68 E-value=2.8 Score=35.45 Aligned_cols=94 Identities=19% Similarity=0.169 Sum_probs=48.9
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHH-HHHHHHHhccCCccCCCCEEEEEcCCCCCC-CCCCCccE
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVS-SIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-PEFAPYDA 229 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~-A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-~~~~~fD~ 229 (298)
|++++.+|+..=..-....+. |. .+++.+|.++--++. .+.++. .+...|....+ ...++||.
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~-GA-~~iltveyn~L~i~~~~~dr~s-------------si~p~df~~~~~~y~~~fD~ 66 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQH-GA-AKILTVEYNKLEIQEEFRDRLS-------------SILPVDFAKNWQKYAGSFDF 66 (177)
T ss_pred CceEEEEecCCchhhHHHHHc-CC-ceEEEEeecccccCcccccccc-------------cccHHHHHHHHHHhhccchh
Confidence 568888888865544433333 33 578888876421100 010000 00111111111 11245666
Q ss_pred EEECCCCch-----------------hHHHHHhccccCcEEEEEECCC
Q 022372 230 IHVGAAAPE-----------------IPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 230 Ii~~~~~~~-----------------l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
+.+..++++ -...+.+.||+||.|++.++-+
T Consensus 67 ~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG 114 (177)
T PF03269_consen 67 AASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVG 114 (177)
T ss_pred hheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecC
Confidence 655554432 2357788999999999977654
No 472
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=72.61 E-value=8.1 Score=29.41 Aligned_cols=76 Identities=11% Similarity=0.041 Sum_probs=47.8
Q ss_pred EcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEECCCCc
Q 022372 158 IGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHVGAAAP 237 (298)
Q Consensus 158 iG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~~~~~~ 237 (298)
+-||+|..|..+++.+ ++.+++.+. ++++...+..+.......||+|++.+-+.
T Consensus 4 ~~Cg~G~sTS~~~~ki-------------------~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~Diil~~Pqv~ 57 (96)
T cd05564 4 LVCSAGMSTSILVKKM-------------------KKAAEKRGI-------DAEIEAVPESELEEYIDDADVVLLGPQVR 57 (96)
T ss_pred EEcCCCchHHHHHHHH-------------------HHHHHHCCC-------ceEEEEecHHHHHHhcCCCCEEEEChhHH
Confidence 4588888777666654 344444332 35666665544322235699999999888
Q ss_pred hhHHHHHhccccCcEEEEEECC
Q 022372 238 EIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 238 ~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
...+++.+...+.+.-+..++.
T Consensus 58 ~~~~~i~~~~~~~~~pv~~I~~ 79 (96)
T cd05564 58 YMLDEVKKKAAEYGIPVAVIDM 79 (96)
T ss_pred HHHHHHHHHhccCCCcEEEcCh
Confidence 8888888766666655554443
No 473
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=72.43 E-value=15 Score=29.61 Aligned_cols=100 Identities=15% Similarity=0.108 Sum_probs=55.3
Q ss_pred EEEEEcCCC-cH-HHHHHHHHcCCCcEEEEEeCCH-------------------HHHHHHHHHHHHhccCCccCCCCEEE
Q 022372 154 HALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIP-------------------ELVVSSIQNIEKSAAAPLLKEGSLSV 212 (298)
Q Consensus 154 ~VLDiG~Gs-G~-~t~~La~~~g~~~~V~giD~s~-------------------~~l~~A~~~~~~~~~~~~l~~~~v~~ 212 (298)
+|+-+|||. |. .+..|++. |- ++++.+|.+. ...+.+++++++... .-+++.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-Gv-~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p-----~v~i~~ 73 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-GV-GKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNP-----GVNVTA 73 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CC-CEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCC-----CcEEEE
Confidence 478899975 44 33444443 33 5788887651 233445555554321 123333
Q ss_pred EEcCCCCC--CCCCCCccEEEECCCCchhHHHHHhccccCcEEEEEECCC
Q 022372 213 HVGDGRKG--WPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI 260 (298)
Q Consensus 213 ~~gD~~~~--~~~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi~v~~~ 260 (298)
........ ......||+|+...........+.+..+..|.-++..+..
T Consensus 74 ~~~~~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~ 123 (143)
T cd01483 74 VPEGISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGL 123 (143)
T ss_pred EeeecChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 33332211 0112479999988877665566666667777777766653
No 474
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=72.14 E-value=30 Score=30.57 Aligned_cols=78 Identities=19% Similarity=0.038 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHH-HcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--------
Q 022372 151 PGMHALDIGSGTGYLTACFAL-MVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~-~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-------- 221 (298)
.+.++|-.|+++|. +..+++ +...+.+|+.++.+++.++...+.+...+ .++.++..|..+..
T Consensus 9 ~~k~~lItGa~~~i-G~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 9 KGKIALITGASYGI-GFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG-------IEAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCCEEEEeCCCchH-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-------CceEEEEcCCCCHHHHHHHHHH
Confidence 45789999887653 322222 22223689999999887776666654422 36778888876421
Q ss_pred --CCCCCccEEEECCCC
Q 022372 222 --PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~ 236 (298)
...++.|.++.++..
T Consensus 81 ~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 81 IEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHhCCCCCEEEECCCC
Confidence 112468999888764
No 475
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=71.93 E-value=22 Score=32.09 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=56.0
Q ss_pred CCEEEEEcC-CC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCC-----CCCCCCC
Q 022372 152 GMHALDIGS-GT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDG-----RKGWPEF 224 (298)
Q Consensus 152 g~~VLDiG~-Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~-----~~~~~~~ 224 (298)
+.+||-.|+ |. |..+..+++..| .+|+.++.+++..+.+++ + +. ..+ +.... ..... .
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~-~---g~------~~~--~~~~~~~~~~~~~~~-~ 211 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLG--YTVVALTGKEEQADYLKS-L---GA------SEV--LDREDLLDESKKPLL-K 211 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHh-c---CC------cEE--EcchhHHHHHHHHhc-C
Confidence 468998886 43 778888888765 469999999887776643 1 11 111 11100 00111 1
Q ss_pred CCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 225 APYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 225 ~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+.+|+|+....- .......+.|+++|+++.
T Consensus 212 ~~~d~vi~~~~~-~~~~~~~~~l~~~g~~v~ 241 (325)
T cd05280 212 ARWAGAIDTVGG-DVLANLLKQTKYGGVVAS 241 (325)
T ss_pred CCccEEEECCch-HHHHHHHHhhcCCCEEEE
Confidence 358988865443 466788999999999886
No 476
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=71.46 E-value=36 Score=30.95 Aligned_cols=108 Identities=22% Similarity=0.213 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEE
Q 022372 135 PHMHATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHV 214 (298)
Q Consensus 135 p~~~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~ 214 (298)
|......++.+. .++++.+ |..=+||-.++..+.+. .-++...|..++-....++++.. ..++++..
T Consensus 74 pa~l~~yl~~i~-~lN~~~~-l~~YpGSP~lA~~llR~---qDRl~l~ELHp~D~~~L~~~f~~--------d~~vrv~~ 140 (279)
T COG2961 74 PAELEPYLDAVR-QLNPGGG-LRYYPGSPLLARQLLRE---QDRLVLTELHPSDAPLLRNNFAG--------DRRVRVLR 140 (279)
T ss_pred hHHHHHHHHHHH-HhCCCCC-cccCCCCHHHHHHHcch---hceeeeeecCccHHHHHHHHhCC--------CcceEEEe
Confidence 344444455554 4566655 78889998887776654 35899999999999998888863 26899999
Q ss_pred cCCCC----CCCCCCCccEEEECCCCch------hHHHHHhccc--cCcEEEE
Q 022372 215 GDGRK----GWPEFAPYDAIHVGAAAPE------IPQALIDQLK--PGGRMVI 255 (298)
Q Consensus 215 gD~~~----~~~~~~~fD~Ii~~~~~~~------l~~~l~~~Lk--pGG~Lvi 255 (298)
+|+.. ..++.+.=-+|+++.+++. +.+.+.+.+| ++|...+
T Consensus 141 ~DG~~~l~a~LPP~erRglVLIDPPfE~~~eY~rvv~~l~~~~kRf~~g~yai 193 (279)
T COG2961 141 GDGFLALKAHLPPKERRGLVLIDPPFELKDEYQRVVEALAEAYKRFATGTYAI 193 (279)
T ss_pred cCcHHHHhhhCCCCCcceEEEeCCCcccccHHHHHHHHHHHHHHhhcCceEEE
Confidence 99885 2344455678999998852 3344444444 5677666
No 477
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=71.41 E-value=35 Score=30.69 Aligned_cols=83 Identities=14% Similarity=0.080 Sum_probs=55.8
Q ss_pred CCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEE
Q 022372 152 GMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIH 231 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii 231 (298)
..++|-+|+-- .+.++|+.+.....|+.+|+.|.+.+... ++++|... ..+. ...+|+|+
T Consensus 42 ~k~~lI~G~Yl--tG~~iA~~L~~~~eV~lvDI~p~lk~ll~--------------~~i~F~~~--~~~~--~~~~DlII 101 (252)
T PF06690_consen 42 FKQALIFGAYL--TGNFIASALSKKCEVTLVDIHPHLKELLN--------------ENIKFMEF--RNGL--EGNPDLII 101 (252)
T ss_pred cceEEEEEEEe--ehHHHHHHhccCceEEEEeCcHHHHHHhc--------------CCCceeec--cCCC--CCCCCEEE
Confidence 34899998632 22456666544459999999998877651 56777622 2221 24799999
Q ss_pred ECCCCchhHHHHHhccccCcEEEE
Q 022372 232 VGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 232 ~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
-.-++-.+-.+..+.+.|. .+++
T Consensus 102 D~TGlGGv~~~~Ls~~~p~-v~IV 124 (252)
T PF06690_consen 102 DTTGLGGVDPDFLSKFNPK-VFIV 124 (252)
T ss_pred ECCCCCCCCHHHHhccCCC-EEEE
Confidence 9888877777777778754 4444
No 478
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=71.21 E-value=20 Score=33.88 Aligned_cols=79 Identities=15% Similarity=0.097 Sum_probs=45.7
Q ss_pred CCEEEEEcCCC-cH-HHHHHHHHcCCCcEEEEEeCCH---------------------HHHHHHHHHHHHhccCCccCCC
Q 022372 152 GMHALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIP---------------------ELVVSSIQNIEKSAAAPLLKEG 208 (298)
Q Consensus 152 g~~VLDiG~Gs-G~-~t~~La~~~g~~~~V~giD~s~---------------------~~l~~A~~~~~~~~~~~~l~~~ 208 (298)
+.+||-+|||. |. .+..|++. |- ++++.+|.+. ..++.+++++.+.... -
T Consensus 24 ~~~VlIiG~GglGs~va~~La~a-Gv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~-----v 96 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRA-GI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSE-----V 96 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHc-CC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCC-----c
Confidence 46899999986 44 33444444 43 5888899874 2455566666653211 2
Q ss_pred CEEEEEcCCCCCC--CCCCCccEEEECCCCc
Q 022372 209 SLSVHVGDGRKGW--PEFAPYDAIHVGAAAP 237 (298)
Q Consensus 209 ~v~~~~gD~~~~~--~~~~~fD~Ii~~~~~~ 237 (298)
+++.+..+..... .....+|+|+....-.
T Consensus 97 ~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~ 127 (338)
T PRK12475 97 EIVPVVTDVTVEELEELVKEVDLIIDATDNF 127 (338)
T ss_pred EEEEEeccCCHHHHHHHhcCCCEEEEcCCCH
Confidence 3455555543110 0114689998887543
No 479
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=70.90 E-value=14 Score=34.19 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=49.8
Q ss_pred CCEEEEEcCCC--cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 152 GMHALDIGSGT--GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 152 g~~VLDiG~Gs--G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
.++|+-+|+|. |+++..|++. | ..|+.+..++. +. +...+..-.....+..+..............||+
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~-g--~~V~~~~r~~~--~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 75 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARA-G--FDVHFLLRSDY--EA----VRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDW 75 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHC-C--CeEEEEEeCCH--HH----HHhCCeEEEeCCCCeeecCceEEcchhhcCCCCE
Confidence 36899999997 4566666664 3 46776666542 22 2222211000001111110011111112357999
Q ss_pred EEECCCC---chhHHHHHhccccCcEEEEEECC
Q 022372 230 IHVGAAA---PEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 230 Ii~~~~~---~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
|++.-.. ....+.+...+++++.++. +.|
T Consensus 76 vilavK~~~~~~~~~~l~~~~~~~~~iv~-lqN 107 (313)
T PRK06249 76 VLVGLKTTANALLAPLIPQVAAPDAKVLL-LQN 107 (313)
T ss_pred EEEEecCCChHhHHHHHhhhcCCCCEEEE-ecC
Confidence 9877443 3455677778888887654 443
No 480
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=70.52 E-value=9.4 Score=29.09 Aligned_cols=80 Identities=11% Similarity=0.105 Sum_probs=50.5
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEEEE
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAIHV 232 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~Ii~ 232 (298)
.+|| +-||+|..|..++... ++.+++.+. ++++...+..+.......||+|++
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k~-------------------~~~~~~~gi-------~~~v~a~~~~~~~~~~~~~Dvill 56 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNKM-------------------NKAAEEYGV-------PVKIAAGSYGAAGEKLDDADVVLL 56 (95)
T ss_pred cEEE-EECCCchhHHHHHHHH-------------------HHHHHHCCC-------cEEEEEecHHHHHhhcCCCCEEEE
Confidence 4666 5599998777776654 233333332 355555554332222246899999
Q ss_pred CCCCchhHHHHHhccccCcEEEEEECC
Q 022372 233 GAAAPEIPQALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 233 ~~~~~~l~~~l~~~LkpGG~Lvi~v~~ 259 (298)
.+-.....+++.+...+-|.=+..++.
T Consensus 57 ~pqi~~~~~~i~~~~~~~~ipv~~I~~ 83 (95)
T TIGR00853 57 APQVAYMLPDLKKETDKKGIPVEVING 83 (95)
T ss_pred CchHHHHHHHHHHHhhhcCCCEEEeCh
Confidence 999988888888888776655555543
No 481
>PRK07478 short chain dehydrogenase; Provisional
Probab=70.35 E-value=35 Score=29.85 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=47.7
Q ss_pred CCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC---------
Q 022372 152 GMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW--------- 221 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~--------- 221 (298)
+.++|-.|++.| ++..+++.+ ..+.+|+.++.+++..+...+.+...+ .++.++..|..+..
T Consensus 6 ~k~~lItGas~g-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~ 77 (254)
T PRK07478 6 GKVAIITGASSG-IGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG-------GEAVALAGDVRDEAYAKALVALA 77 (254)
T ss_pred CCEEEEeCCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-------CcEEEEEcCCCCHHHHHHHHHHH
Confidence 568888887654 333333332 123589999999887776666554422 35777888876521
Q ss_pred -CCCCCccEEEECCCC
Q 022372 222 -PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 -~~~~~fD~Ii~~~~~ 236 (298)
...++.|.++.++..
T Consensus 78 ~~~~~~id~li~~ag~ 93 (254)
T PRK07478 78 VERFGGLDIAFNNAGT 93 (254)
T ss_pred HHhcCCCCEEEECCCC
Confidence 112468999887753
No 482
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=70.13 E-value=3.3 Score=38.03 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=31.1
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHHH
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPELV 189 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~l 189 (298)
...+++|||+|||+|-......... . ..++..|++.+.+
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~-~-~~~~fqD~na~vl 152 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKG-A-VSVHFQDFNAEVL 152 (282)
T ss_pred EecCceeEecCCcccccchhhhhhc-c-ceeeeEecchhhe
Confidence 3568899999999999888777663 2 5788888888776
No 483
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=69.05 E-value=20 Score=31.23 Aligned_cols=98 Identities=16% Similarity=0.012 Sum_probs=59.4
Q ss_pred cCCCCCEEEEEcC-C-CcHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCC---CCC
Q 022372 148 NLKPGMHALDIGS-G-TGYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRK---GWP 222 (298)
Q Consensus 148 ~l~~g~~VLDiG~-G-sG~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~---~~~ 222 (298)
.+++|.+|+-.|. | .|..+..+++..| .+++.++.+++..+.+++... ... ..+.....+... ...
T Consensus 105 ~~~~g~~vlv~g~~g~~g~~~~~~a~~~g--~~v~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~ 175 (293)
T cd05195 105 RLQKGESVLIHAAAGGVGQAAIQLAQHLG--AEVFATVGSEEKREFLRELGG--PVD-----HIFSSRDLSFADGILRAT 175 (293)
T ss_pred ccCCCCEEEEecCCCHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHhCC--Ccc-----eEeecCchhHHHHHHHHh
Confidence 4788999998874 3 3777788888765 578888888877766654310 000 001100000000 011
Q ss_pred CCCCccEEEECCCCchhHHHHHhccccCcEEEE
Q 022372 223 EFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 223 ~~~~fD~Ii~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
....+|+++....-. ......+.|+++|+++.
T Consensus 176 ~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~ 207 (293)
T cd05195 176 GGRGVDVVLNSLSGE-LLRASWRCLAPFGRFVE 207 (293)
T ss_pred CCCCceEEEeCCCch-HHHHHHHhcccCceEEE
Confidence 124689888655543 67788999999999886
No 484
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=68.96 E-value=14 Score=29.87 Aligned_cols=88 Identities=18% Similarity=0.254 Sum_probs=48.2
Q ss_pred CCEEEEEcCCCcH-HHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCC-CCCccE
Q 022372 152 GMHALDIGSGTGY-LTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPE-FAPYDA 229 (298)
Q Consensus 152 g~~VLDiG~GsG~-~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~-~~~fD~ 229 (298)
..+|+|+|-|.=. .+..|.+. | ..|+++|+.+. .+ . ..+.++.-|..+.-.+ -...|+
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~-G--~dV~~tDi~~~---~a----~----------~g~~~v~DDif~P~l~iY~~a~l 73 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER-G--FDVIATDINPR---KA----P----------EGVNFVVDDIFNPNLEIYEGADL 73 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH-S---EEEEE-SS-S---------------------STTEE---SSS--HHHHTTEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHc-C--CcEEEEECccc---cc----c----------cCcceeeecccCCCHHHhcCCcE
Confidence 3499999999844 55666666 3 68999999987 11 1 2456777777653221 136799
Q ss_pred EEECCCCchhHHHHHhccc-cCcEEEE-EECC
Q 022372 230 IHVGAAAPEIPQALIDQLK-PGGRMVI-PVGN 259 (298)
Q Consensus 230 Ii~~~~~~~l~~~l~~~Lk-pGG~Lvi-~v~~ 259 (298)
|++.-+-+++...+.++-| -|.-+++ |+++
T Consensus 74 IYSiRPP~El~~~il~lA~~v~adlii~pL~~ 105 (127)
T PF03686_consen 74 IYSIRPPPELQPPILELAKKVGADLIIRPLGG 105 (127)
T ss_dssp EEEES--TTSHHHHHHHHHHHT-EEEEE-BTT
T ss_pred EEEeCCChHHhHHHHHHHHHhCCCEEEECCCC
Confidence 9999998888877766554 3555554 5554
No 485
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=68.93 E-value=43 Score=30.61 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=22.1
Q ss_pred CCEEEEEcCCC-cHH-HHHHHHHcCCCcEEEEEeCC
Q 022372 152 GMHALDIGSGT-GYL-TACFALMVGPQGRAVGVEHI 185 (298)
Q Consensus 152 g~~VLDiG~Gs-G~~-t~~La~~~g~~~~V~giD~s 185 (298)
+.+|+-+|||. |.. +..|++. |- ++++.+|.+
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~-GV-g~itLiD~D 63 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALART-GI-GAITLIDMD 63 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc-CC-CEEEEEeCC
Confidence 57899999996 544 4445554 43 588888866
No 486
>PRK06125 short chain dehydrogenase; Provisional
Probab=68.69 E-value=37 Score=29.83 Aligned_cols=78 Identities=17% Similarity=0.098 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------CC
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------PE 223 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------~~ 223 (298)
.++++|-.|+++| ++..+++.+ ..+.+|+.++.+++..+.+.+.+.... ..++.++..|..+.. ..
T Consensus 6 ~~k~vlItG~~~g-iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~D~~~~~~~~~~~~~ 78 (259)
T PRK06125 6 AGKRVLITGASKG-IGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH------GVDVAVHALDLSSPEAREQLAAE 78 (259)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc------CCceEEEEecCCCHHHHHHHHHH
Confidence 3578899997554 444443332 122589999999887776665554321 145777778876421 11
Q ss_pred CCCccEEEECCC
Q 022372 224 FAPYDAIHVGAA 235 (298)
Q Consensus 224 ~~~fD~Ii~~~~ 235 (298)
.++.|.++.+..
T Consensus 79 ~g~id~lv~~ag 90 (259)
T PRK06125 79 AGDIDILVNNAG 90 (259)
T ss_pred hCCCCEEEECCC
Confidence 246898888765
No 487
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=68.59 E-value=27 Score=32.14 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=48.2
Q ss_pred CEEEEEcCCC-c-HHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 153 MHALDIGSGT-G-YLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 153 ~~VLDiG~Gs-G-~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
.+|+-+|.|- | .++..+.+. |....+++.|.+....+.+.+. .+.....+... .......|+|
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~-g~~v~i~g~d~~~~~~~~a~~l-------------gv~d~~~~~~~-~~~~~~aD~V 68 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA-GLVVRIIGRDRSAATLKAALEL-------------GVIDELTVAGL-AEAAAEADLV 68 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc-CCeEEEEeecCcHHHHHHHhhc-------------Ccccccccchh-hhhcccCCEE
Confidence 5788999886 4 444555444 5556789999988777776421 11111101000 1112457999
Q ss_pred EECCCCchh---HHHHHhccccCcEE
Q 022372 231 HVGAAAPEI---PQALIDQLKPGGRM 253 (298)
Q Consensus 231 i~~~~~~~l---~~~l~~~LkpGG~L 253 (298)
++.-+.... .+++...||+|..+
T Consensus 69 ivavPi~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 69 IVAVPIEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred EEeccHHHHHHHHHHhcccCCCCCEE
Confidence 888776543 34555556665443
No 488
>PRK06172 short chain dehydrogenase; Provisional
Probab=68.48 E-value=34 Score=29.82 Aligned_cols=78 Identities=17% Similarity=0.145 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-------- 221 (298)
.+.++|-.|+++| ++..+++.+ ..+.+|+.++.+++.++...+.+...+ .++.++..|..+..
T Consensus 6 ~~k~ilItGas~~-iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~~D~~~~~~i~~~~~~ 77 (253)
T PRK06172 6 SGKVALVTGGAAG-IGRATALAFAREGAKVVVADRDAAGGEETVALIREAG-------GEALFVACDVTRDAEVKALVEQ 77 (253)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-------CceEEEEcCCCCHHHHHHHHHH
Confidence 3578999987554 444444333 223589999999887776666554422 46788888886521
Q ss_pred --CCCCCccEEEECCCC
Q 022372 222 --PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~ 236 (298)
...++.|.|+.++..
T Consensus 78 ~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 78 TIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 011467999887653
No 489
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=68.43 E-value=24 Score=30.78 Aligned_cols=80 Identities=15% Similarity=0.052 Sum_probs=48.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHHHcC-CCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC------
Q 022372 149 LKPGMHALDIGSGTGYLTACFALMVG-PQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW------ 221 (298)
Q Consensus 149 l~~g~~VLDiG~GsG~~t~~La~~~g-~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~------ 221 (298)
..++.+||-.|+ +|.++..+++.+. .+.+|++++.+++..+...+.+...+ ..++.++..|.....
T Consensus 9 ~~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~~d~~~~~~~~~~~ 81 (247)
T PRK08945 9 LLKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAG------GPQPAIIPLDLLTATPQNYQQ 81 (247)
T ss_pred ccCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcC------CCCceEEEecccCCCHHHHHH
Confidence 345778999995 5555555554432 22589999999877766555554422 135667777764211
Q ss_pred ------CCCCCccEEEECCC
Q 022372 222 ------PEFAPYDAIHVGAA 235 (298)
Q Consensus 222 ------~~~~~fD~Ii~~~~ 235 (298)
...++.|.++.++.
T Consensus 82 ~~~~~~~~~~~id~vi~~Ag 101 (247)
T PRK08945 82 LADTIEEQFGRLDGVLHNAG 101 (247)
T ss_pred HHHHHHHHhCCCCEEEECCc
Confidence 11246899988764
No 490
>PRK08703 short chain dehydrogenase; Provisional
Probab=68.35 E-value=37 Score=29.36 Aligned_cols=46 Identities=13% Similarity=0.025 Sum_probs=29.6
Q ss_pred CCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHH
Q 022372 152 GMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEK 198 (298)
Q Consensus 152 g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~ 198 (298)
+.+||-.|+++ .++..+++.+ ..+.+|+.++.+++..+...+.+..
T Consensus 6 ~k~vlItG~sg-giG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~ 52 (239)
T PRK08703 6 DKTILVTGASQ-GLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVE 52 (239)
T ss_pred CCEEEEECCCC-cHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHH
Confidence 56899999644 4444444433 2236899999998877666555543
No 491
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=68.01 E-value=9.9 Score=33.00 Aligned_cols=43 Identities=14% Similarity=0.072 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHH
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQN 195 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~ 195 (298)
.|++|+-+|.|. .+..+++.+ ..+.+|++.|.+++.++...+.
T Consensus 27 ~gk~v~I~G~G~--vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~ 70 (200)
T cd01075 27 EGKTVAVQGLGK--VGYKLAEHLLEEGAKLIVADINEEAVARAAEL 70 (200)
T ss_pred CCCEEEEECCCH--HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 568999999985 333333332 1226899999998877766543
No 492
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=68.01 E-value=19 Score=28.98 Aligned_cols=95 Identities=16% Similarity=0.174 Sum_probs=52.9
Q ss_pred CCCEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccE
Q 022372 151 PGMHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDA 229 (298)
Q Consensus 151 ~g~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~ 229 (298)
.+.+||-+|+|. |..........|. .+++.+..+.+..+...+.+.. .++.+..-+-.. .....+|+
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~---------~~~~~~~~~~~~--~~~~~~Di 78 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGG---------VNIEAIPLEDLE--EALQEADI 78 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTG---------CSEEEEEGGGHC--HHHHTESE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCc---------cccceeeHHHHH--HHHhhCCe
Confidence 478999999976 4333333332243 4799999998766655555411 456666544222 11246999
Q ss_pred EEECCCCch--hHHHHHhccccCcEEEEEE
Q 022372 230 IHVGAAAPE--IPQALIDQLKPGGRMVIPV 257 (298)
Q Consensus 230 Ii~~~~~~~--l~~~l~~~LkpGG~Lvi~v 257 (298)
|+...+... +.++......+.=.+++-+
T Consensus 79 vI~aT~~~~~~i~~~~~~~~~~~~~~v~Dl 108 (135)
T PF01488_consen 79 VINATPSGMPIITEEMLKKASKKLRLVIDL 108 (135)
T ss_dssp EEE-SSTTSTSSTHHHHTTTCHHCSEEEES
T ss_pred EEEecCCCCcccCHHHHHHHHhhhhceecc
Confidence 998877643 3344443333321255544
No 493
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=67.86 E-value=33 Score=30.24 Aligned_cols=73 Identities=16% Similarity=0.096 Sum_probs=45.5
Q ss_pred EEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----------C
Q 022372 154 HALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----------P 222 (298)
Q Consensus 154 ~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----------~ 222 (298)
+||-.|+++| ++..+++.+ ..+.+|+.++.+++.++.+.+.+... .++.++..|..+.. .
T Consensus 2 ~vlItGas~g-IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~--------~~~~~~~~Dv~d~~~~~~~~~~~~~ 72 (259)
T PRK08340 2 NVLVTASSRG-IGFNVARELLKKGARVVISSRNEENLEKALKELKEY--------GEVYAVKADLSDKDDLKNLVKEAWE 72 (259)
T ss_pred eEEEEcCCcH-HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--------CCceEEEcCCCCHHHHHHHHHHHHH
Confidence 6888887654 344444333 22368999999988777766655431 35677788876421 1
Q ss_pred CCCCccEEEECCC
Q 022372 223 EFAPYDAIHVGAA 235 (298)
Q Consensus 223 ~~~~fD~Ii~~~~ 235 (298)
..++.|+++.++.
T Consensus 73 ~~g~id~li~naG 85 (259)
T PRK08340 73 LLGGIDALVWNAG 85 (259)
T ss_pred hcCCCCEEEECCC
Confidence 1246899887765
No 494
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=67.78 E-value=16 Score=28.07 Aligned_cols=87 Identities=14% Similarity=0.116 Sum_probs=51.4
Q ss_pred EEEEEcCCCc-HHHH-HHHHHcCCCcEEEE-EeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCCCCCCCccEE
Q 022372 154 HALDIGSGTG-YLTA-CFALMVGPQGRAVG-VEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGWPEFAPYDAI 230 (298)
Q Consensus 154 ~VLDiG~GsG-~~t~-~La~~~g~~~~V~g-iD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~~~~~~fD~I 230 (298)
+|.-||+|.. ..-. .+.+. .+..++++ +|.+++..+.+.+.. .+. ...|..+.. .....|+|
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~-~~~~~v~~v~d~~~~~~~~~~~~~------------~~~-~~~~~~~ll-~~~~~D~V 66 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRS-SPDFEVVAVCDPDPERAEAFAEKY------------GIP-VYTDLEELL-ADEDVDAV 66 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-TTTEEEEEEECSSHHHHHHHHHHT------------TSE-EESSHHHHH-HHTTESEE
T ss_pred EEEEECCcHHHHHHHHHHHhc-CCCcEEEEEEeCCHHHHHHHHHHh------------ccc-chhHHHHHH-HhhcCCEE
Confidence 6788999773 3222 33333 35566664 699988777664432 222 344433222 22468999
Q ss_pred EECCCCchhHHHHHhccccCcEEEE
Q 022372 231 HVGAAAPEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 231 i~~~~~~~l~~~l~~~LkpGG~Lvi 255 (298)
+...+...-.+.+.+.|+-|--+++
T Consensus 67 ~I~tp~~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 67 IIATPPSSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp EEESSGGGHHHHHHHHHHTTSEEEE
T ss_pred EEecCCcchHHHHHHHHHcCCEEEE
Confidence 8887776555666667777766665
No 495
>PRK07109 short chain dehydrogenase; Provisional
Probab=67.77 E-value=36 Score=31.70 Aligned_cols=78 Identities=17% Similarity=0.099 Sum_probs=49.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-------- 221 (298)
.+.+||-.|+++| ++..+++.+ ..+.+|+.++.+++.++...+.+...+ .++.++..|..+..
T Consensus 7 ~~k~vlITGas~g-IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g-------~~~~~v~~Dv~d~~~v~~~~~~ 78 (334)
T PRK07109 7 GRQVVVITGASAG-VGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG-------GEALAVVADVADAEAVQAAADR 78 (334)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC-------CcEEEEEecCCCHHHHHHHHHH
Confidence 3568888886554 444443332 223589999999887777666665432 46778888876521
Q ss_pred --CCCCCccEEEECCCC
Q 022372 222 --PEFAPYDAIHVGAAA 236 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~~ 236 (298)
...++.|+++.++..
T Consensus 79 ~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 79 AEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHCCCCCEEEECCCc
Confidence 112468999887753
No 496
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=67.67 E-value=49 Score=33.97 Aligned_cols=92 Identities=14% Similarity=0.187 Sum_probs=57.1
Q ss_pred CEEEEEcCCC-cHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CCCCCc
Q 022372 153 MHALDIGSGT-GYLTACFALMVGPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAPY 227 (298)
Q Consensus 153 ~~VLDiG~Gs-G~~t~~La~~~g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----~~~~~f 227 (298)
.+|+-+|+|. |+......+. .+-.++.+|.+++.++.+++. ...++.||..+.. ..-+..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~--~g~~vvvID~d~~~v~~~~~~-------------g~~v~~GDat~~~~L~~agi~~A 465 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLS--SGVKMTVLDHDPDHIETLRKF-------------GMKVFYGDATRMDLLESAGAAKA 465 (621)
T ss_pred CcEEEEecChHHHHHHHHHHh--CCCCEEEEECCHHHHHHHHhc-------------CCeEEEEeCCCHHHHHhcCCCcC
Confidence 5788888887 6544433332 125799999999999988641 3467899988631 122467
Q ss_pred cEEEECCCCchhH---HHHHhccccCcEEEEEECC
Q 022372 228 DAIHVGAAAPEIP---QALIDQLKPGGRMVIPVGN 259 (298)
Q Consensus 228 D~Ii~~~~~~~l~---~~l~~~LkpGG~Lvi~v~~ 259 (298)
|.+++...-++.- -...+.+.|+-.++.-..+
T Consensus 466 ~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~d 500 (621)
T PRK03562 466 EVLINAIDDPQTSLQLVELVKEHFPHLQIIARARD 500 (621)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 8887665543322 2334455677666654433
No 497
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=67.50 E-value=46 Score=32.01 Aligned_cols=102 Identities=16% Similarity=0.201 Sum_probs=64.1
Q ss_pred HHHHHHHHHccCCCCCEEEEEcCCCcHHHHHHHHHcCCCcEEEEEeCCHHH--HHHHHHHHHHhccCCccCCCCEEEEEc
Q 022372 138 HATCLQLLEENLKPGMHALDIGSGTGYLTACFALMVGPQGRAVGVEHIPEL--VVSSIQNIEKSAAAPLLKEGSLSVHVG 215 (298)
Q Consensus 138 ~~~~l~~L~~~l~~g~~VLDiG~GsG~~t~~La~~~g~~~~V~giD~s~~~--l~~A~~~~~~~~~~~~l~~~~v~~~~g 215 (298)
-.++++.+...... .+||-++=..|.++..++.. ++ +.+ ++.. -...++|+..++.. ...++++
T Consensus 32 de~ll~~~~~~~~~-~~~~i~nd~fGal~~~l~~~-~~----~~~--~ds~~~~~~~~~n~~~n~~~----~~~~~~~-- 97 (378)
T PRK15001 32 DEYLLQQLDDTEIR-GPVLILNDAFGALSCALAEH-KP----YSI--GDSYISELATRENLRLNGID----ESSVKFL-- 97 (378)
T ss_pred HHHHHHHHhhcccC-CCEEEEcCchhHHHHHHHhC-CC----Cee--ehHHHHHHHHHHHHHHcCCC----cccceee--
Confidence 34566666532222 38999999999999999964 33 222 2322 23446677776542 2345554
Q ss_pred CCCCCCCCCCCccEEEECCCC-----chhHHHHHhccccCcEEEE
Q 022372 216 DGRKGWPEFAPYDAIHVGAAA-----PEIPQALIDQLKPGGRMVI 255 (298)
Q Consensus 216 D~~~~~~~~~~fD~Ii~~~~~-----~~l~~~l~~~LkpGG~Lvi 255 (298)
+....++ +.+|+|+.--+. ++....+...|+||+.+++
T Consensus 98 ~~~~~~~--~~~d~vl~~~PK~~~~l~~~l~~l~~~l~~~~~ii~ 140 (378)
T PRK15001 98 DSTADYP--QQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIA 140 (378)
T ss_pred ccccccc--CCCCEEEEEeCCCHHHHHHHHHHHHhhCCCCCEEEE
Confidence 3333333 458999888775 3455778889999999764
No 498
>PRK06139 short chain dehydrogenase; Provisional
Probab=67.49 E-value=34 Score=31.97 Aligned_cols=77 Identities=13% Similarity=-0.014 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHHHc-CCCcEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC--------
Q 022372 151 PGMHALDIGSGTGYLTACFALMV-GPQGRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW-------- 221 (298)
Q Consensus 151 ~g~~VLDiG~GsG~~t~~La~~~-g~~~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~-------- 221 (298)
.+++||-.|+++|. +..+++.+ ..+.+|+.++.+++.++...+.+...+ .++.++..|..+..
T Consensus 6 ~~k~vlITGAs~GI-G~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g-------~~~~~~~~Dv~d~~~v~~~~~~ 77 (330)
T PRK06139 6 HGAVVVITGASSGI-GQATAEAFARRGARLVLAARDEEALQAVAEECRALG-------AEVLVVPTDVTDADQVKALATQ 77 (330)
T ss_pred CCCEEEEcCCCCHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC-------CcEEEEEeeCCCHHHHHHHHHH
Confidence 35688888876543 33333322 122689999999988877766665432 35677777876421
Q ss_pred --CCCCCccEEEECCC
Q 022372 222 --PEFAPYDAIHVGAA 235 (298)
Q Consensus 222 --~~~~~fD~Ii~~~~ 235 (298)
...+++|+++.++.
T Consensus 78 ~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 78 AASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHhcCCCCEEEECCC
Confidence 01256899988875
No 499
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=67.45 E-value=36 Score=28.76 Aligned_cols=31 Identities=23% Similarity=0.187 Sum_probs=20.9
Q ss_pred EEEEEcCCC-cH-HHHHHHHHcCCCcEEEEEeCCH
Q 022372 154 HALDIGSGT-GY-LTACFALMVGPQGRAVGVEHIP 186 (298)
Q Consensus 154 ~VLDiG~Gs-G~-~t~~La~~~g~~~~V~giD~s~ 186 (298)
+|+-+|||. |. .+..|++. |- ++++.+|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~-Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-GV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CC-CeEEEEeCCE
Confidence 488999986 54 44555554 43 5788888775
No 500
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=66.60 E-value=34 Score=30.22 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=42.5
Q ss_pred CEEEEEcCCCcHHHHHHHHHcCCC-cEEEEEeCCHHHHHHHHHHHHHhccCCccCCCCEEEEEcCCCCCC----CCCCCc
Q 022372 153 MHALDIGSGTGYLTACFALMVGPQ-GRAVGVEHIPELVVSSIQNIEKSAAAPLLKEGSLSVHVGDGRKGW----PEFAPY 227 (298)
Q Consensus 153 ~~VLDiG~GsG~~t~~La~~~g~~-~~V~giD~s~~~l~~A~~~~~~~~~~~~l~~~~v~~~~gD~~~~~----~~~~~f 227 (298)
++++-+|+|. ++..+|+.+... ..|+.+|.+++.++.....- .....+++|+.+.. ..-..+
T Consensus 1 m~iiIiG~G~--vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~-----------~~~~~v~gd~t~~~~L~~agi~~a 67 (225)
T COG0569 1 MKIIIIGAGR--VGRSVARELSEEGHNVVLIDRDEERVEEFLADE-----------LDTHVVIGDATDEDVLEEAGIDDA 67 (225)
T ss_pred CEEEEECCcH--HHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh-----------cceEEEEecCCCHHHHHhcCCCcC
Confidence 3677888876 333333333221 58999999999887743210 24578888887521 112468
Q ss_pred cEEEECCC
Q 022372 228 DAIHVGAA 235 (298)
Q Consensus 228 D~Ii~~~~ 235 (298)
|++++.-.
T Consensus 68 D~vva~t~ 75 (225)
T COG0569 68 DAVVAATG 75 (225)
T ss_pred CEEEEeeC
Confidence 88866544
Done!