Your job contains 1 sequence.
>022374
MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI
ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL
LSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC
YLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRA
SCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRKTTDA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 022374
(298 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2014124 - symbol:AT1G18340 species:3702 "Arabi... 1066 8.1e-108 1
DICTYBASE|DDB_G0275517 - symbol:gtf2h3 "general transcrip... 479 1.3e-45 1
ZFIN|ZDB-GENE-040718-302 - symbol:gtf2h3 "general transcr... 397 6.3e-37 1
FB|FBgn0031309 - symbol:Tfb4 "Tfb4" species:7227 "Drosoph... 390 3.5e-36 1
UNIPROTKB|Q13889 - symbol:GTF2H3 "General transcription f... 384 1.5e-35 1
UNIPROTKB|G3X6N2 - symbol:GTF2H3 "General transcription f... 383 1.9e-35 1
UNIPROTKB|Q05B56 - symbol:GTF2H3 "General transcription f... 383 1.9e-35 1
RGD|1305494 - symbol:Gtf2h3 "general transcription factor... 383 1.9e-35 1
UNIPROTKB|B4DNZ6 - symbol:GTF2H3 "cDNA FLJ53013, highly s... 382 2.4e-35 1
MGI|MGI:1277143 - symbol:Gtf2h3 "general transcription fa... 382 2.4e-35 1
UNIPROTKB|F1RFL7 - symbol:GTF2H3 "Uncharacterized protein... 380 4.0e-35 1
UNIPROTKB|F1NGC7 - symbol:GTF2H3 "Uncharacterized protein... 377 8.3e-35 1
ASPGD|ASPL0000052286 - symbol:AN0138 species:162425 "Emer... 307 3.8e-33 2
POMBASE|SPBC30B4.07c - symbol:tfb4 "transcription factor ... 350 6.0e-32 1
CGD|CAL0005890 - symbol:orf19.4194 species:5476 "Candida ... 257 6.8e-30 2
UNIPROTKB|Q59NH6 - symbol:TFB4 "Putative uncharacterized ... 257 6.8e-30 2
UNIPROTKB|F5GWD3 - symbol:GTF2H3 "General transcription f... 238 2.5e-26 2
SGD|S000006260 - symbol:TFB4 "Subunit of TFIIH complex" s... 249 3.0e-21 1
UNIPROTKB|H0YFF7 - symbol:GTF2H3 "General transcription f... 248 3.9e-21 1
WB|WBGene00014230 - symbol:ZK1128.4 species:6239 "Caenorh... 204 1.8e-16 1
UNIPROTKB|F5GX35 - symbol:GTF2H3 "General transcription f... 152 1.1e-10 1
UNIPROTKB|F5H4K7 - symbol:GTF2H3 "General transcription f... 133 4.8e-07 1
UNIPROTKB|F5GXG6 - symbol:GTF2H3 "General transcription f... 115 3.5e-05 1
>TAIR|locus:2014124 [details] [associations]
symbol:AT1G18340 species:3702 "Arabidopsis thaliana"
[GO:0000439 "core TFIIH complex" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=RCA] InterPro:IPR004600
Pfam:PF03850 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006355
GO:GO:0006281 GO:GO:0003743 GO:GO:0000439 eggNOG:COG5242
HOGENOM:HOG000175900 KO:K03143 PANTHER:PTHR12831 OMA:NAHLMQK
EMBL:AY085062 EMBL:BT025174 IPI:IPI00532419 RefSeq:NP_564050.1
UniGene:At.41799 ProteinModelPortal:Q8LF41 IntAct:Q8LF41
STRING:Q8LF41 EnsemblPlants:AT1G18340.1 GeneID:838415
KEGG:ath:AT1G18340 TAIR:At1g18340 InParanoid:Q8LF41
PhylomeDB:Q8LF41 ProtClustDB:CLSN2687852 Genevestigator:Q8LF41
Uniprot:Q8LF41
Length = 301
Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
Identities = 209/299 (69%), Positives = 235/299 (78%)
Query: 1 MASAPSKLYXXXXXXXXXXXXTNPXXXXXXXXXXXXXLTHVLAFLNAILTLNQLNQVVVI 60
M + SK Y TNP L+HVLAFLNA+L LNQLNQVVVI
Sbjct: 1 MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGN----QSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE-PEGR 115
ATGY+SCDY+YDSS T N +S G G MP++ +LL+ LEEF+ KDE+L K+E E R
Sbjct: 61 ATGYSSCDYIYDSSLTSNHGNFESNGTG-MPAIFGSLLKKLEEFVTKDEELSKEEVSEDR 119
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
I LLSGSLSMALCYIQRVFRSG LHPQPRILCLQGSPDGPEQYVA+MN+IFSAQR MV
Sbjct: 120 IPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMV 179
Query: 176 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 235
PIDSCY+G QNSAFLQQASYITGGVHH P+QLDGLFQYL TIF TDLHSR F+QLPKP+G
Sbjct: 180 PIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIG 239
Query: 236 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRK 294
VDFRASCFCHK TIDMGYICSVCLSI+C+H KKCSTCGSVFGQ++ D SA+++KRK
Sbjct: 240 VDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLD-DASSASDKKRK 297
>DICTYBASE|DDB_G0275517 [details] [associations]
symbol:gtf2h3 "general transcription factor IIH,
polypeptide 3" species:44689 "Dictyostelium discoideum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0000439
"core TFIIH complex" evidence=IEA] [GO:0007070 "negative regulation
of transcription from RNA polymerase II promoter during mitosis"
evidence=ISS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
dictyBase:DDB_G0275517 GO:GO:0046872 GO:GO:0006281
GenomeReviews:CM000151_GR EMBL:AAFI02000013 GO:GO:0006367
GO:GO:0005675 GO:GO:0007070 GO:GO:0000439 eggNOG:COG5242 KO:K03143
PANTHER:PTHR12831 RefSeq:XP_643618.1 STRING:Q86IB5
EnsemblProtists:DDB0230196 GeneID:8620205 KEGG:ddi:DDB_G0275517
OMA:NAHIANN ProtClustDB:CLSZ2846874 Uniprot:Q86IB5
Length = 372
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 106/252 (42%), Positives = 146/252 (57%)
Query: 38 LTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGN-----------QSVGNGRM 86
L H + F+NA L LNQ NQ+ +I + +V+ S+ Q NG +
Sbjct: 96 LEHFMVFINAYLMLNQENQLAIICSKIGESSFVFPQSNIDQYQQEQQELEQRQLNENGEL 155
Query: 87 -PSLCATLL-QNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ 144
P+ T+ Q L + D ++ + + I S S S+S+ALCYI R+ R +
Sbjct: 156 LPTPNKTIQGQILAKLQKLDLEIKHDQTD--ILSSSFSASMSIALCYINRIKRETPTI-K 212
Query: 145 PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKP 204
PRIL SPD QY+++MN IFS+Q+ +P+DSC L +S FLQQAS++T G++ KP
Sbjct: 213 PRILVFNISPDVSSQYISVMNCIFSSQKQSIPVDSCILSQSDSTFLQQASHLTSGIYLKP 272
Query: 205 QQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK 264
Q+ + L QYLLT F D SR L P VD+RASCFCHK +D+GY+CSVCLSI+C
Sbjct: 273 QKQELLSQYLLTTFLLDTLSRKSLAYPTLKSVDYRASCFCHKRIVDIGYVCSVCLSIFCG 332
Query: 265 HLKKCSTCGSVF 276
H CSTCG+ F
Sbjct: 333 HSSSCSTCGTKF 344
>ZFIN|ZDB-GENE-040718-302 [details] [associations]
symbol:gtf2h3 "general transcription factor IIH,
polypeptide 3" species:7955 "Danio rerio" [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
ZFIN:ZDB-GENE-040718-302 GO:GO:0006355 GO:GO:0006281 GO:GO:0000439
CTD:2967 eggNOG:COG5242 HOVERGEN:HBG054271 KO:K03143
PANTHER:PTHR12831 TIGRFAMs:TIGR00627 EMBL:BC076236 IPI:IPI00861571
RefSeq:NP_001002564.1 UniGene:Dr.27486 STRING:Q6DGV3 GeneID:436837
KEGG:dre:436837 InParanoid:Q6DGV3 NextBio:20831269 Uniprot:Q6DGV3
Length = 296
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 98/265 (36%), Positives = 145/265 (54%)
Query: 38 LTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSS--TGNQSVGN--GRMPSLCATL 93
L ++ NA L +++ N++ VI + Y+ ++Y S +G + N G+ L T
Sbjct: 37 LDSLMVLANAHLVMSRTNKLAVITSLYHESHFLYPSKQWRSGEEISANPDGKYELLSVTN 96
Query: 94 LQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQ 151
EE N E + E G +LL+ SL+ ALCYI R+ + + RIL ++
Sbjct: 97 DLFAEEIRNLME---RAEVSGSQTETLLAVSLARALCYINRISKDVQAGQEVKSRILVIK 153
Query: 152 GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLF 211
+ D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ + Q L
Sbjct: 154 AAEDSTSQYMNFMNVIFAAQKKNILIDACVLDS-DSGLLQQACDITGGLYLRVPQKVALT 212
Query: 212 QYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCST 271
QYLL F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+T
Sbjct: 213 QYLLWAFLPDAEQRSQLLLPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTT 272
Query: 272 CGSVFGQAQTQSDEPSATNRKRKTT 296
C + F Q + T +K+ T
Sbjct: 273 CETAFKMPLPQM---AKTKKKKLKT 294
>FB|FBgn0031309 [details] [associations]
symbol:Tfb4 "Tfb4" species:7227 "Drosophila melanogaster"
[GO:0001111 "promoter clearance from RNA polymerase II promoter"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0000439 "core TFIIH complex" evidence=ISS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISS] [GO:0005675 "holo TFIIH complex" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0009411
"response to UV" evidence=ISS] [GO:0001113 "transcriptional open
complex formation at RNA polymerase II promoter" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004600 Pfam:PF03850 GO:GO:0009411
GO:GO:0006355 GO:GO:0006289 GO:GO:0005675 GO:GO:0000439
GO:GO:0001113 GO:GO:0001111 eggNOG:COG5242 PANTHER:PTHR12831
EMBL:AY071043 ProteinModelPortal:Q8SZ89 STRING:Q8SZ89 PaxDb:Q8SZ89
PRIDE:Q8SZ89 FlyBase:FBgn0031309 InParanoid:Q8SZ89
OrthoDB:EOG408KQV ArrayExpress:Q8SZ89 Bgee:Q8SZ89 Uniprot:Q8SZ89
Length = 299
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 102/266 (38%), Positives = 148/266 (55%)
Query: 38 LTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNL 97
L V+AF NA L N++ V++ +++ +++Y + V ++ NL
Sbjct: 42 LEAVIAFGNAHLMQKAQNKLAVVSCSHHATNFLYPLP---RRQVELRQVDGQYEAF--NL 96
Query: 98 EEFMNKDEQLGK---QEPEGRIAC-SLLSGSLSMALCYIQRVFRS---GL-LHPQPRILC 149
E K +QLG P C SLL+GS+SMALCYI R+ R+ G+ +H RIL
Sbjct: 97 VEKTVK-QQLGSILMNAPRLSAPCESLLAGSMSMALCYISRLQRNLAPGVKMHS--RILV 153
Query: 150 LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDG 209
+ GS + QY+ +N F+AQ+ + ID+C L + + LQQ IT G K QLDG
Sbjct: 154 VTGSNECASQYMTFLNVFFTAQKLGITIDTCALD-KTLSLLQQGCDITSGQFLKVTQLDG 212
Query: 210 LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKC 269
L QYLL +F R+ L LP P VD+RASCFCH+ ID+GY+CSVCLS++CK+ C
Sbjct: 213 LLQYLLWVFLPAPQIRHKLVLPPPPKVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPIC 272
Query: 270 STCGSVFGQAQTQSDEPSATNRKRKT 295
+TC ++F + P +K+KT
Sbjct: 273 TTCHTIF---KNPGPLPIKGKKKKKT 295
>UNIPROTKB|Q13889 [details] [associations]
symbol:GTF2H3 "General transcription factor IIH subunit 3"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0006289
"nucleotide-excision repair" evidence=NAS;TAS] [GO:0005675 "holo
TFIIH complex" evidence=IDA;NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=NAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA;TAS] [GO:0004672 "protein kinase activity"
evidence=IDA] [GO:0003684 "damaged DNA binding" evidence=NAS]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0008135 "translation factor activity, nucleic
acid binding" evidence=TAS] [GO:0000718 "nucleotide-excision
repair, DNA damage removal" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=TAS] [GO:0006361 "transcription initiation from RNA
polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=TAS]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0050434 "positive regulation of
viral transcription" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR004600
Pfam:PF03850 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0046872
GO:GO:0003684 Reactome:REACT_1675 GO:GO:0006468 EMBL:CH471054
GO:GO:0003700 GO:GO:0008135 GO:GO:0006368 GO:GO:0006367
Reactome:REACT_1788 GO:GO:0005675 GO:GO:0006370 GO:GO:0000718
GO:GO:0050434 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
GO:GO:0006283 GO:GO:0000439 CTD:2967 eggNOG:COG5242
HOGENOM:HOG000175900 HOVERGEN:HBG054271 KO:K03143 OrthoDB:EOG47PX6J
PANTHER:PTHR12831 TIGRFAMs:TIGR00627 EMBL:AK313200 EMBL:Z30093
EMBL:AF548661 EMBL:BC039726 EMBL:BC047868 EMBL:BC065250
IPI:IPI00100791 PIR:S44455 RefSeq:NP_001507.2 UniGene:Hs.355348
ProteinModelPortal:Q13889 DIP:DIP-787N STRING:Q13889
PhosphoSite:Q13889 DMDM:50403772 PaxDb:Q13889 PRIDE:Q13889
DNASU:2967 Ensembl:ENST00000543341 GeneID:2967 KEGG:hsa:2967
UCSC:uc001ufo.1 GeneCards:GC12P124118 H-InvDB:HIX0026378
HGNC:HGNC:4657 MIM:601750 neXtProt:NX_Q13889 PharmGKB:PA29043
InParanoid:Q13889 OMA:NAHLMQK PhylomeDB:Q13889 GenomeRNAi:2967
NextBio:11760 ArrayExpress:Q13889 Bgee:Q13889 CleanEx:HS_GTF2H3
Genevestigator:Q13889 Uniprot:Q13889
Length = 308
Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
Identities = 92/250 (36%), Positives = 144/250 (57%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSS--TGNQSVGNGRMPSLCAT------ 92
V+ N+ L +N+ N++ VIA+ ++Y + G+ G P +
Sbjct: 41 VMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGK 100
Query: 93 --LLQNLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PR 146
LL + E + ++ + + K + +G+ +LL+GSL+ ALCYI R+ + + + R
Sbjct: 101 YELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSR 160
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQ 206
IL ++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q
Sbjct: 161 ILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQ 219
Query: 207 LDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL 266
+ L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C
Sbjct: 220 MPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFS 279
Query: 267 KKCSTCGSVF 276
C+TC + F
Sbjct: 280 PICTTCETAF 289
>UNIPROTKB|G3X6N2 [details] [associations]
symbol:GTF2H3 "General transcription factor IIH subunit 3"
species:9913 "Bos taurus" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=IEA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0000439 "core TFIIH
complex" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
GO:GO:0006355 GO:GO:0006281 GO:GO:0006366 GO:GO:0008353
GO:GO:0008094 GO:GO:0000439 PANTHER:PTHR12831 TIGRFAMs:TIGR00627
OMA:NAHLMQK GeneTree:ENSGT00390000013143 EMBL:DAAA02045235
Ensembl:ENSBTAT00000009561 Uniprot:G3X6N2
Length = 305
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 94/251 (37%), Positives = 143/251 (56%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTG-NQSVGNGRMPSLCAT------- 92
V+ N+ L +N+ N++ VIA+ ++Y + G+ PS T
Sbjct: 37 VMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPSSEFTPSGSKDG 96
Query: 93 ---LLQNLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--P 145
LL E + ++ + + K + EG+ +LL+GSL+ ALCYI R+ + + +
Sbjct: 97 KYELLTAANEVIAEEIKDLMTKSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKS 156
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 205
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K
Sbjct: 157 RILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVP 215
Query: 206 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKH 265
Q+ L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C
Sbjct: 216 QMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNF 275
Query: 266 LKKCSTCGSVF 276
C+TC + F
Sbjct: 276 SPICTTCETAF 286
>UNIPROTKB|Q05B56 [details] [associations]
symbol:GTF2H3 "General transcription factor IIH subunit 3"
species:9913 "Bos taurus" [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0005675 "holo TFIIH complex" evidence=ISS]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
InterPro:IPR004600 Pfam:PF03850 GO:GO:0006355 GO:GO:0046872
GO:GO:0006281 GO:GO:0006366 GO:GO:0008353 GO:GO:0005675
GO:GO:0008094 GO:GO:0000439 EMBL:BC122792 IPI:IPI00702395
RefSeq:NP_001073057.1 UniGene:Bt.103768 STRING:Q05B56 PRIDE:Q05B56
GeneID:511896 KEGG:bta:511896 CTD:2967 eggNOG:COG5242
HOGENOM:HOG000175900 HOVERGEN:HBG054271 InParanoid:Q05B56 KO:K03143
OrthoDB:EOG47PX6J NextBio:20870148 PANTHER:PTHR12831
TIGRFAMs:TIGR00627 Uniprot:Q05B56
Length = 309
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 94/251 (37%), Positives = 143/251 (56%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTG-NQSVGNGRMPSLCAT------- 92
V+ N+ L +N+ N++ VIA+ ++Y + G+ PS T
Sbjct: 41 VMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPSSEFTPSGSKDG 100
Query: 93 ---LLQNLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--P 145
LL E + ++ + + K + EG+ +LL+GSL+ ALCYI R+ + + +
Sbjct: 101 KYELLTAANEVIAEEIKDLMTKSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKS 160
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 205
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K
Sbjct: 161 RILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVP 219
Query: 206 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKH 265
Q+ L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C
Sbjct: 220 QMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNF 279
Query: 266 LKKCSTCGSVF 276
C+TC + F
Sbjct: 280 SPICTTCETAF 290
>RGD|1305494 [details] [associations]
symbol:Gtf2h3 "general transcription factor IIH, polypeptide 3"
species:10116 "Rattus norvegicus" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=ISO;ISS] [GO:0005675 "holo TFIIH complex"
evidence=ISO;ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO;ISS] [GO:0008353 "RNA polymerase II
carboxy-terminal domain kinase activity" evidence=ISO;ISS]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA;ISO] InterPro:IPR004600
Pfam:PF03850 RGD:1305494 GO:GO:0006355 GO:GO:0046872 GO:GO:0006281
GO:GO:0006366 GO:GO:0008353 GO:GO:0005675 GO:GO:0008094
GO:GO:0000439 CTD:2967 eggNOG:COG5242 HOGENOM:HOG000175900
HOVERGEN:HBG054271 KO:K03143 OrthoDB:EOG47PX6J PANTHER:PTHR12831
TIGRFAMs:TIGR00627 GeneTree:ENSGT00390000013143 EMBL:BC093380
IPI:IPI00371092 RefSeq:NP_001019407.1 UniGene:Rn.203542
STRING:Q561R7 PRIDE:Q561R7 Ensembl:ENSRNOT00000001368 GeneID:288651
KEGG:rno:288651 UCSC:RGD:1305494 InParanoid:Q561R7 NextBio:628474
Genevestigator:Q561R7 Uniprot:Q561R7
Length = 309
Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
Identities = 93/252 (36%), Positives = 145/252 (57%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSS--TGN--QSVGNGRMPSLCAT---- 92
V+ NA L +N+ NQ+ VIA+ ++Y + G+ GN +P +
Sbjct: 41 VMVLANAHLFMNRSNQLAVIASHIQESRFLYPGKNGRLGDFFGDPGNA-LPDCNPSGSKD 99
Query: 93 ----LLQNLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ-- 144
LL E + ++ + + K + +G+ +LL+GSL+ ALCYI R ++ + +
Sbjct: 100 GKYELLTAANEVIAEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRASKAVKDNQEMK 159
Query: 145 PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKP 204
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K
Sbjct: 160 SRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKV 218
Query: 205 QQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK 264
Q+ L QYLL +F D R+ L LP P+ VD+RA+CFCH++ I++GY+CSVCLSI+C
Sbjct: 219 PQMPSLLQYLLWVFLPDQDQRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCN 278
Query: 265 HLKKCSTCGSVF 276
C+TC + F
Sbjct: 279 FSPICTTCETAF 290
>UNIPROTKB|B4DNZ6 [details] [associations]
symbol:GTF2H3 "cDNA FLJ53013, highly similar to TFIIH basal
transcription factor complex p34 subunit" species:9606 "Homo
sapiens" [GO:0000439 "core TFIIH complex" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] InterPro:IPR004600
Pfam:PF03850 GO:GO:0006355 GO:GO:0006281 EMBL:AC117503
GO:GO:0000439 HOVERGEN:HBG054271 PANTHER:PTHR12831
TIGRFAMs:TIGR00627 UniGene:Hs.355348 GeneID:2967 HGNC:HGNC:4657
EMBL:AK298128 IPI:IPI01010418 RefSeq:NP_001258796.1
ProteinModelPortal:B4DNZ6 STRING:B4DNZ6 Ensembl:ENST00000228955
ArrayExpress:B4DNZ6 Bgee:B4DNZ6 Uniprot:B4DNZ6
Length = 267
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 91/245 (37%), Positives = 142/245 (57%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVYDSSS--TGNQSVGNGRMPSLCAT--------LLQ 95
N+ L +N+ N++ VIA+ ++Y + G+ G P + LL
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLT 64
Query: 96 NLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQ 151
+ E + ++ + + K + +G+ +LL+GSL+ ALCYI R+ + + + RIL ++
Sbjct: 65 SANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIK 124
Query: 152 GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLF 211
+ D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L
Sbjct: 125 AAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLL 183
Query: 212 QYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCST 271
QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+T
Sbjct: 184 QYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTT 243
Query: 272 CGSVF 276
C + F
Sbjct: 244 CETAF 248
>MGI|MGI:1277143 [details] [associations]
symbol:Gtf2h3 "general transcription factor IIH, polypeptide
3" species:10090 "Mus musculus" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005675 "holo
TFIIH complex" evidence=ISO] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=ISO] InterPro:IPR004600 Pfam:PF03850
MGI:MGI:1277143 GO:GO:0006355 GO:GO:0046872 GO:GO:0006281
GO:GO:0006366 GO:GO:0008353 GO:GO:0005675 GO:GO:0008094
GO:GO:0000439 CTD:2967 eggNOG:COG5242 HOGENOM:HOG000175900
HOVERGEN:HBG054271 KO:K03143 OrthoDB:EOG47PX6J PANTHER:PTHR12831
TIGRFAMs:TIGR00627 OMA:NAHLMQK EMBL:BC017515 IPI:IPI00122664
RefSeq:NP_852075.1 UniGene:Mm.185467 ProteinModelPortal:Q8VD76
STRING:Q8VD76 PhosphoSite:Q8VD76 PaxDb:Q8VD76 PRIDE:Q8VD76
Ensembl:ENSMUST00000031333 GeneID:209357 KEGG:mmu:209357
GeneTree:ENSGT00390000013143 InParanoid:Q8VD76 NextBio:372643
Bgee:Q8VD76 CleanEx:MM_GTF2H3 Genevestigator:Q8VD76
GermOnline:ENSMUSG00000029387 Uniprot:Q8VD76
Length = 309
Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
Identities = 93/251 (37%), Positives = 145/251 (57%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTG-NQSVGN-GR-MPSLCAT----- 92
V+ N+ L +N+ NQ+ VIA+ +Y + G G+ G +P +
Sbjct: 41 VMVLANSHLFMNRSNQLAVIASHIQESRLLYPGKNGGLGDFFGDPGNALPDCNPSGSKDG 100
Query: 93 ---LLQNLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--P 145
LL E + ++ + + K + +G+ +LL+GSL+ ALCYI RV ++ + +
Sbjct: 101 KYELLTVANEVIAEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRVNKAVKDNQEMKS 160
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 205
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K
Sbjct: 161 RILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVP 219
Query: 206 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKH 265
Q+ L QYLL +F D R+ L LP P+ VD+RA+CFCH++ I++GY+CSVCLSI+C
Sbjct: 220 QMPSLLQYLLWVFLPDQDQRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNF 279
Query: 266 LKKCSTCGSVF 276
C+TC + F
Sbjct: 280 SPICTTCETAF 290
>UNIPROTKB|F1RFL7 [details] [associations]
symbol:GTF2H3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0008353 "RNA polymerase II carboxy-terminal domain kinase
activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0000439 "core TFIIH complex"
evidence=IEA] InterPro:IPR004600 Pfam:PF03850 GO:GO:0006355
GO:GO:0006281 GO:GO:0006366 GO:GO:0008353 GO:GO:0008094
GO:GO:0000439 CTD:2967 KO:K03143 PANTHER:PTHR12831
TIGRFAMs:TIGR00627 OMA:NAHLMQK GeneTree:ENSGT00390000013143
EMBL:CU468658 RefSeq:XP_001927574.1 UniGene:Ssc.8825
Ensembl:ENSSSCT00000010711 GeneID:100152121 KEGG:ssc:100152121
Uniprot:F1RFL7
Length = 309
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 97/254 (38%), Positives = 144/254 (56%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSS---------TGNQSV-----GN--G 84
V+ N+ L +N+ N++ VIA+ ++Y + GN S G+ G
Sbjct: 41 VMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPSSEFNPSGSKDG 100
Query: 85 RMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ 144
+ L A EE KD + K + EG+ +LL+GSL+ ALCYI R+ + + +
Sbjct: 101 KYELLTAANDVIAEEI--KD-LMTKSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQE 157
Query: 145 --PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHH 202
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++
Sbjct: 158 MKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYL 216
Query: 203 KPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIY 262
K Q+ L QYLL +F D R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+
Sbjct: 217 KVPQMPSLLQYLLWVFLPDQDQRSQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIF 276
Query: 263 CKHLKKCSTCGSVF 276
C C+TC + F
Sbjct: 277 CNFSPICTTCETAF 290
>UNIPROTKB|F1NGC7 [details] [associations]
symbol:GTF2H3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000439 "core TFIIH complex" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=IEA] [GO:0047485 "protein
N-terminus binding" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
GO:GO:0006355 GO:GO:0006281 GO:GO:0006366 GO:GO:0008353
GO:GO:0008094 GO:GO:0000439 PANTHER:PTHR12831 TIGRFAMs:TIGR00627
OMA:NAHLMQK GeneTree:ENSGT00390000013143 EMBL:AADN02034880
EMBL:AADN02034881 IPI:IPI00813120 Ensembl:ENSGALT00000039540
Uniprot:F1NGC7
Length = 301
Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
Identities = 80/206 (38%), Positives = 125/206 (60%)
Query: 72 DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALC- 130
+S+ +G++ + ++ + + +++ M K + +G+Q +LL+GSL+ ALC
Sbjct: 86 ESNCSGSKDGKYELLTAINDAIAEEIKDLMTKTDMMGQQTE------TLLAGSLAKALCS 139
Query: 131 YIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFL 190
+ V ++ + RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S L
Sbjct: 140 LLMEVLKANQ-EMKSRILVIKAAEDSALQYMNFMNVIFAAQKQSILIDACVLDS-DSGLL 197
Query: 191 QQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTID 250
QQA ITGG++ K L L QYLL +F D R+ L LP PV VD+RA+CFCH+N I+
Sbjct: 198 QQACDITGGIYLKVPHLPSLLQYLLWVFLPDQEQRSQLVLPPPVHVDYRAACFCHRNLIE 257
Query: 251 MGYICSVCLSIYCKHLKKCSTCGSVF 276
+GY+CSVCLSI+C CSTC + F
Sbjct: 258 IGYVCSVCLSIFCNFSPICSTCETAF 283
>ASPGD|ASPL0000052286 [details] [associations]
symbol:AN0138 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR004600 Pfam:PF03850
GO:GO:0006355 EMBL:BN001308 GO:GO:0006281 GO:GO:0000439
HOGENOM:HOG000175900 PANTHER:PTHR12831
EnsemblFungi:CADANIAT00002608 OMA:ACFCHRR Uniprot:C8VQI5
Length = 392
Score = 307 (113.1 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
Identities = 67/155 (43%), Positives = 92/155 (59%)
Query: 144 QPRILCLQ-GSPDGP-EQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVH 201
Q RIL + S G QY+ IMN IF+ QR +PID C L ++ FLQQAS T G++
Sbjct: 219 QSRILIISVSSATGSAHQYIPIMNGIFACQRLHIPIDVCKLSG-DAVFLQQASDATKGIY 277
Query: 202 HKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI 261
+ GL QYL+ F D SR L LP V VDFRA+CFCH+ +D+G++CS+CLSI
Sbjct: 278 MSLSEPRGLLQYLMMAFLPDQRSRKHLILPTRVDVDFRAACFCHRRVVDIGFVCSICLSI 337
Query: 262 YCKHLKK--CSTCGSVFGQAQTQSDEPSATNRKRK 294
+C+ + C TCG+ + +P+ RK+K
Sbjct: 338 FCEPPENGDCLTCGTHLDTGDYGA-KPAVVVRKKK 371
Score = 70 (29.7 bits), Expect = 3.8e-33, Sum P(2) = 3.8e-33
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 38 LTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQS 80
L ++L FLNA L N N+V V+A+ + ++Y S ++ S
Sbjct: 50 LANILVFLNAHLACNYANEVAVVASHTHKAAWLYPSPNSPTTS 92
>POMBASE|SPBC30B4.07c [details] [associations]
symbol:tfb4 "transcription factor TFIIH complex subunit
Tfb4" species:4896 "Schizosaccharomyces pombe" [GO:0000439 "core
TFIIH complex" evidence=ISO] [GO:0000991 "core RNA polymerase II
binding transcription factor activity" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005675 "holo TFIIH complex"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006289
"nucleotide-excision repair" evidence=ISO] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR004600 Pfam:PF03850 PomBase:SPBC30B4.07c GO:GO:0005829
GO:GO:0006355 GO:GO:0046872 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006367 GO:GO:0000991 GO:GO:0006289 GO:GO:0005675
EMBL:AB004539 GO:GO:0000439 eggNOG:COG5242 HOGENOM:HOG000175900
KO:K03143 PANTHER:PTHR12831 TIGRFAMs:TIGR00627 OMA:NAHLMQK
PIR:T40173 RefSeq:NP_595532.1 IntAct:O74366 STRING:O74366
EnsemblFungi:SPBC30B4.07c.1 GeneID:2540343 KEGG:spo:SPBC30B4.07c
OrthoDB:EOG45F0ZD NextBio:20801471 Uniprot:O74366
Length = 297
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 83/241 (34%), Positives = 125/241 (51%)
Query: 38 LTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATL--LQ 95
L + FLNA L + N+V V+A+ + +Y+Y S + Q V T +
Sbjct: 50 LADITVFLNAHLAFHHDNRVAVLASHSDKVEYLYPSIAP-EQKVAEVDPTKEANTYRKFR 108
Query: 96 NLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPD 155
+++ + + + +++SG+LS AL YI +V L + I L G D
Sbjct: 109 EVDDLVLSGMKRLMSSTDKVSRKTMISGALSRALAYINQVQNKNTLRSRILIFSLTG--D 166
Query: 156 GPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL 215
QY+ MN IF AQ+ +PI+ C + + FL+QA+ TGG++ K GL QYL+
Sbjct: 167 VALQYIPTMNCIFCAQKKNIPINVCNIEG-GTLFLEQAADATGGIYLKVDNPKGLLQYLM 225
Query: 216 TIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSV 275
D + R L P VDFRA+CFCHK +D+G++CSVCLSI+C+ CSTC +
Sbjct: 226 MSLFPDQNLRKHLNTPNQANVDFRATCFCHKKVLDIGFVCSVCLSIFCEPRVHCSTCHTK 285
Query: 276 F 276
F
Sbjct: 286 F 286
>CGD|CAL0005890 [details] [associations]
symbol:orf19.4194 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005675 "holo TFIIH complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0000112 "nucleotide-excision
repair factor 3 complex" evidence=IEA] [GO:0070816 "phosphorylation
of RNA polymerase II C-terminal domain" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR004600 Pfam:PF03850 CGD:CAL0005890 GO:GO:0006355
GO:GO:0006281 GO:GO:0000439 EMBL:AACQ01000206 EMBL:AACQ01000205
eggNOG:COG5242 KO:K03143 PANTHER:PTHR12831 RefSeq:XP_711246.1
RefSeq:XP_711270.1 STRING:Q59NH6 GeneID:3647118 GeneID:3647134
KEGG:cal:CaO19.11671 KEGG:cal:CaO19.4194 Uniprot:Q59NH6
Length = 363
Score = 257 (95.5 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 57/153 (37%), Positives = 87/153 (56%)
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 205
R+L + + D +Y+ +MN IF+AQ+ V ID LG NS++LQQAS T GV+ +
Sbjct: 202 RVLIVSANDDDDLRYIPLMNCIFAAQKMKVSIDVAKLGHNNSSYLQQASDATKGVYLHIE 261
Query: 206 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK- 264
G+ Q L T F + + R ++ LP V++RASCF ++D+GY+CSVCL I +
Sbjct: 262 DPKGIIQVLSTAFFIEPNLRPYIILPTNSNVNYRASCFITGKSVDLGYVCSVCLCIMSQL 321
Query: 265 -HLKKCSTCGSVFGQA--QTQSDEPSATNRKRK 294
KC C S F + Q + EP ++K++
Sbjct: 322 PQSGKCPACDSEFDKKIIQDLNREPQVISKKKR 354
Score = 89 (36.4 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 29/105 (27%), Positives = 51/105 (48%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYNSCDYVY-DSSSTGNQSVG--NGRMPSLCAT----- 92
+L FLN L+LN NQV + + ++Y D + GN +V + P + +
Sbjct: 53 LLVFLNGHLSLNNSNQVAFLVSSTMGSKFLYPDLTMVGNPNVSEHSEHFPDMYRSFKMVD 112
Query: 93 --LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRV 135
+LQ L E++ + + + + C L+G++SMAL Y R+
Sbjct: 113 QSVLQQLNEYIEEIIKFETRNEKKGFNC--LTGAISMALTYTNRM 155
>UNIPROTKB|Q59NH6 [details] [associations]
symbol:TFB4 "Putative uncharacterized protein TFB4"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR004600 Pfam:PF03850
CGD:CAL0005890 GO:GO:0006355 GO:GO:0006281 GO:GO:0000439
EMBL:AACQ01000206 EMBL:AACQ01000205 eggNOG:COG5242 KO:K03143
PANTHER:PTHR12831 RefSeq:XP_711246.1 RefSeq:XP_711270.1
STRING:Q59NH6 GeneID:3647118 GeneID:3647134 KEGG:cal:CaO19.11671
KEGG:cal:CaO19.4194 Uniprot:Q59NH6
Length = 363
Score = 257 (95.5 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 57/153 (37%), Positives = 87/153 (56%)
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 205
R+L + + D +Y+ +MN IF+AQ+ V ID LG NS++LQQAS T GV+ +
Sbjct: 202 RVLIVSANDDDDLRYIPLMNCIFAAQKMKVSIDVAKLGHNNSSYLQQASDATKGVYLHIE 261
Query: 206 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK- 264
G+ Q L T F + + R ++ LP V++RASCF ++D+GY+CSVCL I +
Sbjct: 262 DPKGIIQVLSTAFFIEPNLRPYIILPTNSNVNYRASCFITGKSVDLGYVCSVCLCIMSQL 321
Query: 265 -HLKKCSTCGSVFGQA--QTQSDEPSATNRKRK 294
KC C S F + Q + EP ++K++
Sbjct: 322 PQSGKCPACDSEFDKKIIQDLNREPQVISKKKR 354
Score = 89 (36.4 bits), Expect = 6.8e-30, Sum P(2) = 6.8e-30
Identities = 29/105 (27%), Positives = 51/105 (48%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYNSCDYVY-DSSSTGNQSVG--NGRMPSLCAT----- 92
+L FLN L+LN NQV + + ++Y D + GN +V + P + +
Sbjct: 53 LLVFLNGHLSLNNSNQVAFLVSSTMGSKFLYPDLTMVGNPNVSEHSEHFPDMYRSFKMVD 112
Query: 93 --LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRV 135
+LQ L E++ + + + + C L+G++SMAL Y R+
Sbjct: 113 QSVLQQLNEYIEEIIKFETRNEKKGFNC--LTGAISMALTYTNRM 155
>UNIPROTKB|F5GWD3 [details] [associations]
symbol:GTF2H3 "General transcription factor IIH subunit 3"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
GO:GO:0006355 GO:GO:0006281 EMBL:AC117503 GO:GO:0000439
PANTHER:PTHR12831 HGNC:HGNC:4657 IPI:IPI01009488
Ensembl:ENST00000536375 ArrayExpress:F5GWD3 Bgee:F5GWD3
Uniprot:F5GWD3
Length = 258
Score = 238 (88.8 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 43/81 (53%), Positives = 57/81 (70%)
Query: 196 ITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYIC 255
ITGG++ K Q+ L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+C
Sbjct: 166 ITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVC 225
Query: 256 SVCLSIYCKHLKKCSTCGSVF 276
SVCLSI+C C+TC + F
Sbjct: 226 SVCLSIFCNFSPICTTCETAF 246
Score = 74 (31.1 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
Identities = 28/107 (26%), Positives = 53/107 (49%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSS--TGNQSVGNGRMPSLCAT------ 92
V+ N+ L +N+ N++ VIA+ ++Y + G+ G P +
Sbjct: 41 VMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGK 100
Query: 93 --LLQNLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRV 135
LL + E + ++ + + K + +G+ +LL+GSL+ ALCYI R+
Sbjct: 101 YELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRM 147
>SGD|S000006260 [details] [associations]
symbol:TFB4 "Subunit of TFIIH complex" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000439 "core TFIIH complex" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA;IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000990 "core RNA
polymerase binding transcription factor activity" evidence=IC]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IPI]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0070816 "phosphorylation of RNA polymerase II
C-terminal domain" evidence=IDA] [GO:0005675 "holo TFIIH complex"
evidence=IDA] InterPro:IPR004600 Pfam:PF03850 SGD:S000006260
GO:GO:0046872 GO:GO:0006366 EMBL:Z71255 EMBL:BK006949 EMBL:Z49219
GO:GO:0006289 GO:GO:0070816 GO:GO:0005675 GO:GO:0000439
GO:GO:0000112 eggNOG:COG5242 HOGENOM:HOG000175900 KO:K03143
PANTHER:PTHR12831 TIGRFAMs:TIGR00627 OMA:NAHLMQK
GeneTree:ENSGT00390000013143 OrthoDB:EOG45F0ZD PIR:S54078
RefSeq:NP_015381.1 ProteinModelPortal:Q12004 DIP:DIP-5634N
IntAct:Q12004 MINT:MINT-540583 STRING:Q12004 PaxDb:Q12004
PeptideAtlas:Q12004 EnsemblFungi:YPR056W GeneID:856169
KEGG:sce:YPR056W CYGD:YPR056w NextBio:981322 Genevestigator:Q12004
GermOnline:YPR056W Uniprot:Q12004
Length = 338
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 67/192 (34%), Positives = 97/192 (50%)
Query: 95 QNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRIL---CL 150
+ L E + K +L K++ E S L+G++S L Y+ R+ + + + R+L C
Sbjct: 123 ETLVEEIYKLFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCG 182
Query: 151 QGSP-DGPEQYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLD 208
GS D QY+ IMN IFSA + PID +G ++ S FLQQ + T GV+ + +
Sbjct: 183 SGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTE 242
Query: 209 GLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--KHL 266
GL QYL T D R + P VDFR SC+ + +G+ICSVCL +
Sbjct: 243 GLIQYLATAMFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAVGFICSVCLCVLSIIPPG 302
Query: 267 KKCSTCGSVFGQ 278
KC C S F +
Sbjct: 303 NKCPACDSQFDE 314
Score = 122 (48.0 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 33/100 (33%), Positives = 47/100 (47%)
Query: 183 GAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASC 242
G++ S FLQQ + T GV+ + +GL QYL T D R + P VDFR SC
Sbjct: 217 GSKESTFLQQTTDATNGVYLHVESTEGLIQYLATAMFIDPSLRPIIVKPNHGSVDFRTSC 276
Query: 243 FCHKNTIDMGYICSVCLSIY--------C--------KHL 266
+ + +G+ICSVCL + C +H+
Sbjct: 277 YLTGRVVAVGFICSVCLCVLSIIPPGNKCPACDSQFDEHV 316
Score = 92 (37.4 bits), Expect = 9.5e-11, Sum P(2) = 9.5e-11
Identities = 37/136 (27%), Positives = 61/136 (44%)
Query: 38 LTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQN 96
L ++ FLNA L N N+V VIA Y+Y +S+S S + S + +
Sbjct: 54 LEALIVFLNAHLAFNSANKVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSD 113
Query: 97 L-EEFMNKDE----------QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-Q 144
+ F N DE +L K++ E S L+G++S L Y+ R+ + + +
Sbjct: 114 MYRRFRNVDETLVEEIYKLFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLK 173
Query: 145 PRILCLQ-GSPDGPEQ 159
R+L L GS ++
Sbjct: 174 SRLLVLTCGSGSSKDE 189
>UNIPROTKB|H0YFF7 [details] [associations]
symbol:GTF2H3 "General transcription factor IIH subunit 3"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
GO:GO:0006355 GO:GO:0006281 EMBL:AC117503 GO:GO:0000439
PANTHER:PTHR12831 HGNC:HGNC:4657 Ensembl:ENST00000543154
Bgee:H0YFF7 Uniprot:H0YFF7
Length = 194
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 48/98 (48%), Positives = 64/98 (65%)
Query: 181 YLGAQNSAFL--QQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDF 238
Y+ N F +QA ITGG++ K Q+ L QYLL +F D R+ L LP PV VD+
Sbjct: 78 YMNFMNVIFAAQKQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDY 137
Query: 239 RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 138 RAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 175
Score = 108 (43.1 bits), Expect = 0.00047, P = 0.00047
Identities = 34/108 (31%), Positives = 57/108 (52%)
Query: 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCL 150
+++ +++ M K + G Q E +LL+GSL+ ALCYI R+ + + + RIL +
Sbjct: 15 IVEEIKDLMTKSDIKG-QHTE-----TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVI 68
Query: 151 QGSPDGPEQYVAIMNAIFSAQRSMVPIDS-CYLGA-QNSAFLQQASYI 196
+ + D QY+ MN IF+AQ+ I YL Q + LQ ++
Sbjct: 69 KAAEDSALQYMNFMNVIFAAQKQACDITGGLYLKVPQMPSLLQYLLWV 116
>WB|WBGene00014230 [details] [associations]
symbol:ZK1128.4 species:6239 "Caenorhabditis elegans"
[GO:0000439 "core TFIIH complex" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR004600 Pfam:PF03850 GO:GO:0009792
GO:GO:0040010 GO:GO:0006355 GO:GO:0006281 GO:GO:0000003
GO:GO:0000439 EMBL:Z47357 eggNOG:COG5242 PANTHER:PTHR12831
TIGRFAMs:TIGR00627 GeneTree:ENSGT00390000013143 RefSeq:NP_499249.2
ProteinModelPortal:Q09645 STRING:Q09645 PaxDb:Q09645
EnsemblMetazoa:ZK1128.4 GeneID:176425 KEGG:cel:CELE_ZK1128.4
UCSC:ZK1128.4 CTD:176425 WormBase:ZK1128.4 HOGENOM:HOG000019080
InParanoid:Q09645 OMA:QYTPICK Uniprot:Q09645
Length = 296
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 52/152 (34%), Positives = 79/152 (51%)
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQASYITGG--VHH 202
R + + +P ++ ++MN FSA + + +D +G LQQA+ ITGG +H
Sbjct: 148 RAVVISITPIMGSEHGSLMNLFFSAAKQSICVDVVSMGDDFTGGILQQAADITGGSFLHA 207
Query: 203 KPQQLDGLFQYLLTIFGTD-LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI 261
K Q L + L+T TD H F +L VD+RASC CH + G++CS+CLS+
Sbjct: 208 KKPQT--LLKILMTNMLTDPTHRAVFSKLSHN-SVDYRASCACHHQLVSSGWVCSICLSV 264
Query: 262 YCKHLKKCSTCGSVFGQAQTQSDEPSATNRKR 293
C++ C C + F T ++ P NRKR
Sbjct: 265 LCQYTPICKVCKAAF----TIANLPIKPNRKR 292
>UNIPROTKB|F5GX35 [details] [associations]
symbol:GTF2H3 "General transcription factor IIH subunit 3"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
GO:GO:0006355 GO:GO:0006281 EMBL:AC117503 GO:GO:0000439
PANTHER:PTHR12831 HGNC:HGNC:4657 IPI:IPI01010821
Ensembl:ENST00000543415 ArrayExpress:F5GX35 Bgee:F5GX35
Uniprot:F5GX35
Length = 200
Score = 152 (58.6 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 57/202 (28%), Positives = 100/202 (49%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVYDSSS--TGNQSVGNGRMPSLCAT--------LLQ 95
N+ L +N+ N++ VIA+ ++Y + G+ G P + LL
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLT 64
Query: 96 NLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQ 151
+ E + ++ + + K + +G+ +LL+GSL+ ALCYI R+ + + + RIL ++
Sbjct: 65 SANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIK 124
Query: 152 GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLF 211
+ D QY+ MN IF+AQ+ + ID+C L + +S LQQA G+ H + L
Sbjct: 125 AAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQAQ----GIAH-----ENLI 174
Query: 212 QYLLTIFGTDLHSRNFLQLPKP 233
L T+ G SR+ + + P
Sbjct: 175 P-LETLVGVSSRSRSEISVNPP 195
>UNIPROTKB|F5H4K7 [details] [associations]
symbol:GTF2H3 "General transcription factor IIH subunit 3"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
GO:GO:0006355 GO:GO:0006281 EMBL:AC117503 GO:GO:0000439
PANTHER:PTHR12831 HGNC:HGNC:4657 IPI:IPI01010954
Ensembl:ENST00000538845 ArrayExpress:F5H4K7 Bgee:F5H4K7
Uniprot:F5H4K7
Length = 210
Score = 133 (51.9 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 43/154 (27%), Positives = 79/154 (51%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSS--TGNQSVGNGRMPSLCAT------ 92
V+ N+ L +N+ N++ VIA+ ++Y + G+ G P +
Sbjct: 56 VMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGK 115
Query: 93 --LLQNLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PR 146
LL + E + ++ + + K + +G+ +LL+GSL+ ALCYI R+ + + + R
Sbjct: 116 YELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSR 175
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
IL ++ + D QY+ MN IF+AQ+ + ID+C
Sbjct: 176 ILVIKAAEDSALQYMNFMNVIFAAQKQNILIDAC 209
>UNIPROTKB|F5GXG6 [details] [associations]
symbol:GTF2H3 "General transcription factor IIH subunit 3"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR004600 Pfam:PF03850
GO:GO:0006355 GO:GO:0006281 EMBL:AC117503 GO:GO:0000439
PANTHER:PTHR12831 HGNC:HGNC:4657 IPI:IPI01011371
Ensembl:ENST00000539994 ArrayExpress:F5GXG6 Bgee:F5GXG6
Uniprot:F5GXG6
Length = 177
Score = 115 (45.5 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 40/146 (27%), Positives = 74/146 (50%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSS--TGNQSVGNGRMPSLCAT------ 92
V+ N+ L +N+ N++ VIA+ ++Y + G+ G P +
Sbjct: 31 VMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGK 90
Query: 93 --LLQNLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PR 146
LL + E + ++ + + K + +G+ +LL+GSL+ ALCYI R+ + + + R
Sbjct: 91 YELLTSANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSR 150
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQR 172
IL ++ + D QY+ MN IF+AQ+
Sbjct: 151 ILVIKAAEDSALQYMNFMNVIFAAQK 176
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.134 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 298 273 0.0010 114 3 11 22 0.45 33
32 0.40 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 23
No. of states in DFA: 587 (62 KB)
Total size of DFA: 195 KB (2111 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.57u 0.17s 23.74t Elapsed: 00:00:01
Total cpu time: 23.57u 0.17s 23.74t Elapsed: 00:00:01
Start: Thu May 9 19:12:07 2013 End: Thu May 9 19:12:08 2013