BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022374
(298 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225459534|ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
vinifera]
gi|302141830|emb|CBI19033.3| unnamed protein product [Vitis vinifera]
Length = 297
Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust.
Identities = 236/298 (79%), Positives = 263/298 (88%), Gaps = 3/298 (1%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
MA PSKLYSDDVSL+VVLLDTNPFFWS++SL FS+FL+HVLAFLN+IL +NQLNQVVVI
Sbjct: 1 MAPVPSKLYSDDVSLLVVLLDTNPFFWSTASLPFSKFLSHVLAFLNSILLINQLNQVVVI 60
Query: 61 ATGYNSCDYVYDSSST-GNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
ATG NSC++++DSSS N ++ NGRMP+LC+ LLQ LEEF+ DE+L K+ I S
Sbjct: 61 ATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSS 120
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
LLSGSLSMALCYIQRVFR+G LHPQPRILCLQGSPDGPEQYVA+MNAIFSAQRSMVPIDS
Sbjct: 121 LLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDS 180
Query: 180 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 239
C +GAQ+SAFLQQASYITGGV+ KPQQLDGLFQYL T+F TDLHSR FLQLPKP GVDFR
Sbjct: 181 CVIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFR 240
Query: 240 ASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRKTTD 297
ASCFCHKNTIDMGYICSVCLSI+CKH KKCSTCGSVFGQA QSD SAT+RKRKT +
Sbjct: 241 ASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQA--QSDGNSATDRKRKTPE 296
>gi|449470273|ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
sativus]
Length = 295
Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/297 (77%), Positives = 259/297 (87%), Gaps = 2/297 (0%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
MASAPSKLY+DDVSL+VVLLDTNPFFWS+S+L FS+FL+HVLAFLN+IL LNQLN+VVVI
Sbjct: 1 MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL 120
TGY SC Y+Y+SSS N + +GRMP+LC LL+NLEEF+ DEQ K++P+G SL
Sbjct: 61 GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
Query: 121 LSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
LSGSLSMALCYIQ+VFRSG LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
Query: 181 YLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRA 240
Y+G+ NSAFLQQASYITGGV+ KPQQ+DGLFQYL T+FGTDLHSR FLQLPK VGVDFRA
Sbjct: 181 YIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRA 240
Query: 241 SCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRKTTD 297
SCFCHK TIDMGY+CSVCLSI+CKH KKCSTCGSVFG+ + D S + KRKT +
Sbjct: 241 SCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELD--SVSKLKRKTPE 295
>gi|18394597|ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
thaliana]
gi|21537277|gb|AAM61618.1| unknown [Arabidopsis thaliana]
gi|92856638|gb|ABE77412.1| At1g18340 [Arabidopsis thaliana]
gi|332191584|gb|AEE29705.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
thaliana]
Length = 301
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/299 (75%), Positives = 259/299 (86%), Gaps = 7/299 (2%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M + SK YSDDVSL+V+LLDTNP FWS++S++FSQFL+HVLAFLNA+L LNQLNQVVVI
Sbjct: 1 MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGN----QSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE-PEGR 115
ATGY+SCDY+YDSS T N +S G G MP++ +LL+ LEEF+ KDE+L K+E E R
Sbjct: 61 ATGYSSCDYIYDSSLTSNHGNFESNGTG-MPAIFGSLLKKLEEFVTKDEELSKEEVSEDR 119
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
I LLSGSLSMALCYIQRVFRSG LHPQPRILCLQGSPDGPEQYVA+MN+IFSAQR MV
Sbjct: 120 IPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMV 179
Query: 176 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 235
PIDSCY+G QNSAFLQQASYITGGVHH P+QLDGLFQYL TIF TDLHSR F+QLPKP+G
Sbjct: 180 PIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIG 239
Query: 236 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRK 294
VDFRASCFCHK TIDMGYICSVCLSI+C+H KKCSTCGSVFGQ++ D SA+++KRK
Sbjct: 240 VDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLD-DASSASDKKRK 297
>gi|297850232|ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
lyrata]
gi|297338839|gb|EFH69256.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
lyrata]
Length = 301
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/299 (75%), Positives = 259/299 (86%), Gaps = 7/299 (2%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M S SK YSDDVSL+V+LLDTNP FWS++S++FSQFL+HVLAFLNA+L LNQLNQVVVI
Sbjct: 1 MPSVVSKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVLAFLNAVLGLNQLNQVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGN----QSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE-PEGR 115
ATGY+SCDY+YDSS T N +S G G MP+L +LL+ LE+F+ KDE+L ++E E R
Sbjct: 61 ATGYSSCDYIYDSSLTSNHGNLESNGTG-MPALFGSLLKKLEDFVTKDEELSREEVSEDR 119
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
I LLSGSLSMALCYIQRVFRSG LHPQPRILCLQGSPDGPEQYVA+MN+IFSAQR MV
Sbjct: 120 IPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMV 179
Query: 176 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 235
PIDSCY+G QNSAFLQQASYITGGVHH P+QLDGLFQYL TIF TDLHSR+F+QLPKP+G
Sbjct: 180 PIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRSFVQLPKPIG 239
Query: 236 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRK 294
VDFRASCFCHK TIDMGYICSVCLSI+C+H KKCSTCGSVFGQ++ D S +++KRK
Sbjct: 240 VDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLD-DASSVSDKKRK 297
>gi|224084866|ref|XP_002307429.1| predicted protein [Populus trichocarpa]
gi|222856878|gb|EEE94425.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 228/290 (78%), Positives = 254/290 (87%), Gaps = 4/290 (1%)
Query: 10 SDDVSLVVVLLDTNPFFWSS-SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
+DDVSLVVVLLDTNPFFW+ SSLSFSQFL+HVLAF+N+IL LNQLNQVVVIA+GYN+CD
Sbjct: 1 ADDVSLVVVLLDTNPFFWTPPSSLSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYNTCD 60
Query: 69 YVYDSSSTGNQ-SVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSM 127
Y+YDSSS +Q +GRMPSL + LLQ LEEFM KDE+LGK++ + I SLLSGSLSM
Sbjct: 61 YIYDSSSDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSM 120
Query: 128 ALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 187
ALCYIQRVFRSG LHPQPRILCLQGSPDGPEQYVA+MNAIFSAQRSMVPIDSCY+GA NS
Sbjct: 121 ALCYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGAHNS 180
Query: 188 AFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKN 247
AFLQQASYITGGV+ KPQ LDGLFQYL T+F TDLHSR+F+QLP+P GVDFRASCFCHK
Sbjct: 181 AFLQQASYITGGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRASCFCHKT 240
Query: 248 TIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRKTTD 297
TIDMGYICSVCLSI+C H KKCSTCGSVFGQA QSD S ++ KRK +
Sbjct: 241 TIDMGYICSVCLSIFCNHHKKCSTCGSVFGQA--QSDTSSTSDLKRKAPE 288
>gi|255584434|ref|XP_002532948.1| RNA polymerase II transcription factor B subunit, putative [Ricinus
communis]
gi|223527277|gb|EEF29432.1| RNA polymerase II transcription factor B subunit, putative [Ricinus
communis]
Length = 266
Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/257 (79%), Positives = 230/257 (89%), Gaps = 1/257 (0%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
MAS PSKLYSDDVSLV+VLLDTNPFFW++SSL FSQFL+HVLAFLN+IL LNQLNQVVVI
Sbjct: 1 MASVPSKLYSDDVSLVMVLLDTNPFFWTTSSLPFSQFLSHVLAFLNSILLLNQLNQVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK-QEPEGRIACS 119
A GYNSCDY+YDSS N S GR+P+L + LLQ LE+FM +DE+LGK +E + +IA S
Sbjct: 61 ANGYNSCDYIYDSSLVMNHSSDEGRIPALYSDLLQKLEDFMIRDEKLGKGEESKRKIASS 120
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
LLSGSLSMALCYIQR+FRSG LHPQPRILCLQGSPDGPEQYVA+MN+IFSAQRSMVPIDS
Sbjct: 121 LLSGSLSMALCYIQRIFRSGPLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDS 180
Query: 180 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 239
CY+G NSAFLQQASYITGGV+ KPQ LDGLFQYL+T+F TDLHSR+FLQLP+P GVDFR
Sbjct: 181 CYVGGHNSAFLQQASYITGGVYVKPQHLDGLFQYLVTVFATDLHSRSFLQLPRPAGVDFR 240
Query: 240 ASCFCHKNTIDMGYICS 256
ASCFCHK TIDMG+ICS
Sbjct: 241 ASCFCHKTTIDMGFICS 257
>gi|357461529|ref|XP_003601046.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355490094|gb|AES71297.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 340
Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/337 (62%), Positives = 243/337 (72%), Gaps = 47/337 (13%)
Query: 3 SAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
SAPSK Y+DDVSL+VV LDTNPFFWSS FS+FL+ VLAFLN+IL L QLNQVVVIAT
Sbjct: 4 SAPSKNYADDVSLLVVTLDTNPFFWSSFPFHFSEFLSQVLAFLNSILLLGQLNQVVVIAT 63
Query: 63 GYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK-QEPEGRIACSLL 121
G NSC YVYDS+S N + NG MP++ + LL NL+EF+ KD+QL G I SLL
Sbjct: 64 GCNSCSYVYDSASDKNHASTNGTMPAIYSNLLHNLDEFVAKDQQLTTPHHKPGTIPSSLL 123
Query: 122 SGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
SG+LSMALCYIQR FRSG +HPQPRILCLQGS DGPEQYVAIMNAIFSAQRS+VP+DSC+
Sbjct: 124 SGALSMALCYIQRAFRSGPMHPQPRILCLQGSTDGPEQYVAIMNAIFSAQRSVVPVDSCF 183
Query: 182 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 241
+G+ NSAFLQQASYITGG++++P Q++GLFQYL T+F TDLHSR FL+LPK +GVDFRAS
Sbjct: 184 IGSNNSAFLQQASYITGGIYYRPPQMEGLFQYLSTVFATDLHSREFLRLPKSLGVDFRAS 243
Query: 242 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTC----------------------------- 272
CFCHK TIDMGY+CSVCLSI+C+H KCSTC
Sbjct: 244 CFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCSFTIYDASNECKCSLFADCSNQFNLAEIF 303
Query: 273 ---------------GSVFGQAQTQSDEPSATNRKRK 294
SVFG QTQS+ S NRKRK
Sbjct: 304 PLSAVFFNFFYSFIISSVFG--QTQSEAASEENRKRK 338
>gi|356509424|ref|XP_003523449.1| PREDICTED: general transcription factor IIH subunit 3-like [Glycine
max]
Length = 294
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/296 (70%), Positives = 239/296 (80%), Gaps = 5/296 (1%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SAPSKLY+DDVSL+VV LDTNPFFWS+ F++FL+ VLAFLN IL L QLNQV+VI
Sbjct: 1 MPSAPSKLYADDVSLLVVTLDTNPFFWSTFPFPFAEFLSQVLAFLNTILLLGQLNQVIVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ--EPEGRIAC 118
ATG NSC YVYDS+S N G MP+L + LL NL+EF+ +D QL G +
Sbjct: 61 ATGCNSCGYVYDSTSDKNHGSTTGTMPALYSNLLHNLDEFLARDRQLDADASHAPGIVPS 120
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
SLLSGSLSMALCYIQR FRSG + PQPRILCLQG+ DGPEQYVAIMNAIFSAQ S VPID
Sbjct: 121 SLLSGSLSMALCYIQRAFRSGPMPPQPRILCLQGAADGPEQYVAIMNAIFSAQHSTVPID 180
Query: 179 SCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDF 238
SCY+G+ NSAFLQQASYITGG+++KP QLDGL+QYL T+F TDLHSR FL+LPK VGVDF
Sbjct: 181 SCYIGSNNSAFLQQASYITGGIYYKPPQLDGLYQYLSTVFATDLHSRAFLRLPKSVGVDF 240
Query: 239 RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRK 294
RASCFCHK TIDMGY+CSVCLSI+C+H KCSTCGSVFGQAQ + SA +R+RK
Sbjct: 241 RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQL---DASAADRQRK 293
>gi|363806998|ref|NP_001242062.1| uncharacterized protein LOC100776751 [Glycine max]
gi|255647869|gb|ACU24393.1| unknown [Glycine max]
Length = 294
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/296 (69%), Positives = 238/296 (80%), Gaps = 5/296 (1%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SA SKLY+DDVSL+VV LDTNPFFWS+ F++FL+ VLAFLN+IL L QLNQV+VI
Sbjct: 1 MPSASSKLYADDVSLLVVTLDTNPFFWSTFPFPFAEFLSQVLAFLNSILLLGQLNQVIVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPE--GRIAC 118
ATG NSC Y+YDS+S N G MP+L + LL NL+EF+ +D QL G +
Sbjct: 61 ATGCNSCGYIYDSTSDKNHGSTTGTMPALYSNLLHNLDEFLARDRQLDADAAHAPGTVPS 120
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
SLLSGSLSMALCYIQR FRSG + PQPRILCL+G DGPEQYVAIMNAIFSAQ S VPID
Sbjct: 121 SLLSGSLSMALCYIQRAFRSGPMPPQPRILCLRGVADGPEQYVAIMNAIFSAQHSTVPID 180
Query: 179 SCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDF 238
SCY+G+ NSAFLQQASYITGG+++KP QLDGL+QYL T+F TDL+SR FL+LPK VGVDF
Sbjct: 181 SCYIGSNNSAFLQQASYITGGIYYKPPQLDGLYQYLSTVFATDLYSRAFLRLPKSVGVDF 240
Query: 239 RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRK 294
RASCFCHK TIDMGY+CSVCLSI+C+H KCSTCGSVFGQAQ + SA +R+RK
Sbjct: 241 RASCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCGSVFGQAQL---DASAADRQRK 293
>gi|294464556|gb|ADE77788.1| unknown [Picea sitchensis]
Length = 306
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/305 (63%), Positives = 232/305 (76%), Gaps = 18/305 (5%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSS-------SSLSFSQFLTHVLAFLNAILTLNQ 53
MASA S DDVSLVVVLLDTNPFFW+S SSL+FSQFL HVLAF N++L L+Q
Sbjct: 6 MASAGSNPPQDDVSLVVVLLDTNPFFWASATSSGQASSLTFSQFLEHVLAFFNSLLLLHQ 65
Query: 54 LNQVVVIATGYNSCDYVYDSSSTGNQ------SVGNGRMPSLCATLLQNLEEFMNKDEQL 107
+NQ+VVI TG NSC+++YDSS+T ++ + + + ++Q LE+F+ +D+ L
Sbjct: 66 MNQLVVIGTGTNSCEFIYDSSTTNSEYKKSKDTKCSQEFLTPSTIIVQQLEDFVRRDQAL 125
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAI 167
+ SLLSGSLSMALCYIQR+ R G HPQPRILCLQGSPDGP+QYVAIMNAI
Sbjct: 126 NTNNNATKNIHSLLSGSLSMALCYIQRIIRGGPSHPQPRILCLQGSPDGPQQYVAIMNAI 185
Query: 168 FSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF 227
FSAQRSMVP+DSC +G+Q+SAFLQQAS+ITGG++ KPQQL+GLFQ+L +F TDLHSR F
Sbjct: 186 FSAQRSMVPVDSCIVGSQHSAFLQQASHITGGIYLKPQQLEGLFQFLAMVFATDLHSRRF 245
Query: 228 LQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPS 287
LQLP+P GVDFRASCFCHK TIDMGY+CSVCLSI+C+H KKCSTC S F Q PS
Sbjct: 246 LQLPRPTGVDFRASCFCHKKTIDMGYVCSVCLSIFCEHSKKCSTCESTFNQ-----KPPS 300
Query: 288 ATNRK 292
RK
Sbjct: 301 GQKRK 305
>gi|357146071|ref|XP_003573866.1| PREDICTED: general transcription factor IIH subunit 3-like
[Brachypodium distachyon]
Length = 290
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 187/283 (66%), Positives = 223/283 (78%), Gaps = 10/283 (3%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SA SKLYSDDVSLVVV++DTNPFFW+ ++L F+ F H++ F+N++L LN LNQVVVI
Sbjct: 1 MTSAHSKLYSDDVSLVVVIVDTNPFFWAGAALPFADFFGHLIHFVNSLLLLNHLNQVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQ---NLEEFMNKD--EQLGKQEPEGR 115
A G +SC YV+DS GN + P + AT + +EEF+ +D + G G
Sbjct: 61 AAGVSSCAYVFDS---GNAAASGS--PDVAATFAKASRKVEEFVKQDARDTAGNGTVAGG 115
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
A SL SG+LS+ALCYIQRVFRSG HPQPRILCLQGSPDGPEQYVA+MN+IFSAQRSMV
Sbjct: 116 GAASLFSGALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMV 175
Query: 176 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 235
PIDSC +G Q+SAFLQQASYITGGV+ KPQ+L GLFQYL +F +DLHSR FL+LPK +G
Sbjct: 176 PIDSCIVGTQDSAFLQQASYITGGVYLKPQELSGLFQYLAAVFASDLHSRAFLRLPKTLG 235
Query: 236 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQ 278
VDFRASCFCHK TIDMGY+CSVCLSI+CK+ KKCSTCGS F +
Sbjct: 236 VDFRASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFSR 278
>gi|326513394|dbj|BAK06937.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 292
Score = 342 bits (878), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 180/280 (64%), Positives = 221/280 (78%), Gaps = 4/280 (1%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SA SKLYSDDVSLVVV++DTNPFFW+ ++L F+ FL+H++ F+N++L L+ LN VV+I
Sbjct: 1 MTSAHSKLYSDDVSLVVVVVDTNPFFWAGAALPFADFLSHLIHFVNSLLLLSNLNHVVII 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKD--EQLGKQEPEGRIAC 118
A G +SC YV+DS + G + G + + LEE + +D E +G A
Sbjct: 61 AAGVSSCAYVFDSGNAG--ASGTADVAETLGKASRKLEELIKQDARETVGNGTVADGGAA 118
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
SL SG+LS+ALCYIQR+FRSG HPQPRILC+QGSPDGPEQYVA+MN+IFSAQRSMVPID
Sbjct: 119 SLFSGALSLALCYIQRIFRSGSRHPQPRILCVQGSPDGPEQYVAVMNSIFSAQRSMVPID 178
Query: 179 SCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDF 238
+C +G Q+SAFLQQASYITGGV+ KPQ+L GLFQYL +F TDLHSR FL+LPK +GVDF
Sbjct: 179 TCIVGTQDSAFLQQASYITGGVYMKPQELSGLFQYLAAVFATDLHSRTFLRLPKTLGVDF 238
Query: 239 RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQ 278
RASCFCHK TIDMGY+CSVCLSI+CK+ KKCSTCGS F +
Sbjct: 239 RASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFSR 278
>gi|212722318|ref|NP_001131186.1| uncharacterized protein LOC100192494 [Zea mays]
gi|194688300|gb|ACF78234.1| unknown [Zea mays]
gi|194690816|gb|ACF79492.1| unknown [Zea mays]
gi|224028537|gb|ACN33344.1| unknown [Zea mays]
gi|413926714|gb|AFW66646.1| hypothetical protein ZEAMMB73_940692 [Zea mays]
Length = 291
Score = 336 bits (862), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 181/281 (64%), Positives = 220/281 (78%), Gaps = 4/281 (1%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SA SKLYSDDVSLVVV++DTNPFFW++++L F+ F H++ F+N++L LN LN+VVVI
Sbjct: 1 MTSAHSKLYSDDVSLVVVVVDTNPFFWAAAALPFADFFAHLIHFVNSLLLLNHLNRVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL--GKQEPEGRIAC 118
A G +SC Y+ DSS G + + EEF+ +D + G A
Sbjct: 61 AAGVSSCAYILDSSDASPS--GGVAVSDTFDKASRKAEEFIAQDARATAGNGSVASANAA 118
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
SLLSG+LS++LCYIQR+FRSG HPQPRILCLQGSPDGPEQYVA+MN+IFSAQRSMVPID
Sbjct: 119 SLLSGALSISLCYIQRIFRSGSRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPID 178
Query: 179 SCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDF 238
SC +G Q+SAFLQQASYITGGV+ KPQ+L+GLFQYL +F TDLHSR FL+LPK +GVDF
Sbjct: 179 SCIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRAFLRLPKTLGVDF 238
Query: 239 RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQA 279
RASCFCHK TIDMGY+CS+CLSI+CK+ KKCSTCGS F +A
Sbjct: 239 RASCFCHKKTIDMGYVCSICLSIFCKNQKKCSTCGSEFSRA 279
>gi|223946567|gb|ACN27367.1| unknown [Zea mays]
gi|413926715|gb|AFW66647.1| hypothetical protein ZEAMMB73_940692 [Zea mays]
Length = 294
Score = 327 bits (837), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 180/284 (63%), Positives = 219/284 (77%), Gaps = 7/284 (2%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
M SA SKLYSDDVSLVVV++DTNPFFW++++L F+ F H++ F+N++L LN LN+VVVI
Sbjct: 1 MTSAHSKLYSDDVSLVVVVVDTNPFFWAAAALPFADFFAHLIHFVNSLLLLNHLNRVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL--GKQEPEGRIAC 118
A G +SC Y+ DSS G + + EEF+ +D + G A
Sbjct: 61 AAGVSSCAYILDSSDASPS--GGVAVSDTFDKASRKAEEFIAQDARATAGNGSVASANAA 118
Query: 119 SLLSGSLSMALCY---IQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
SLLSG+LS++LC IQR+FRSG HPQPRILCLQGSPDGPEQYVA+MN+IFSAQRSMV
Sbjct: 119 SLLSGALSISLCCYLDIQRIFRSGSRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMV 178
Query: 176 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 235
PIDSC +G Q+SAFLQQASYITGGV+ KPQ+L+GLFQYL +F TDLHSR FL+LPK +G
Sbjct: 179 PIDSCIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRAFLRLPKTLG 238
Query: 236 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQA 279
VDFRASCFCHK TIDMGY+CS+CLSI+CK+ KKCSTCGS F +A
Sbjct: 239 VDFRASCFCHKKTIDMGYVCSICLSIFCKNQKKCSTCGSEFSRA 282
>gi|115443937|ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group]
gi|41053068|dbj|BAD08012.1| putative TFIIH basal transcription factor complex p34 subunit
[Oryza sativa Japonica Group]
gi|113535279|dbj|BAF07662.1| Os02g0125800 [Oryza sativa Japonica Group]
gi|215768495|dbj|BAH00724.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 289
Score = 320 bits (819), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 177/279 (63%), Positives = 219/279 (78%), Gaps = 8/279 (2%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
A SKLYSDDVSL VV++DTNP FW++++L F+ F H++ ++N++L LN LN VVVIA G
Sbjct: 2 ASSKLYSDDVSLAVVVVDTNPLFWATAALPFADFFAHLIHYVNSLLLLNHLNHVVVIAAG 61
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA----CS 119
+SC Y++DSS + + + A + ++EF+ +D + G +A S
Sbjct: 62 LSSCTYIFDSSDASASGAAD--VAATFAKASRKMDEFIAEDAR--ATSSNGSVADGNAAS 117
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
LLSG+LS+ALCYIQRVFRSG HPQPRILCLQGSPDGPEQYVA+MN+IFSAQRSMVPIDS
Sbjct: 118 LLSGALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDS 177
Query: 180 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 239
C +G Q+SAFLQQASYITGGV+ KPQ+L+GLFQYL +F TDLHSR FL+LPK +GVDFR
Sbjct: 178 CIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRTFLRLPKTLGVDFR 237
Query: 240 ASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQ 278
ASCFCHK TIDMGY+CSVCLSI+CK+ KKCSTCGS F +
Sbjct: 238 ASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFNR 276
>gi|168000809|ref|XP_001753108.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695807|gb|EDQ82149.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 257
Score = 296 bits (758), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 144/258 (55%), Positives = 193/258 (74%), Gaps = 13/258 (5%)
Query: 44 FLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGN------QSVGNGRMP-SLCATLLQN 96
F+N IL LN N++V+IATG ++C ++YDS++T S N + S + ++
Sbjct: 2 FVNGILLLNHTNRIVIIATGSSTCAFLYDSTATDGINGSSVTSKANKKTQVSRTELITKS 61
Query: 97 LEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG 156
++EF++K+E+ K+ + I S +SGSLSMALCYIQRV R L HPQ RILCLQGSPD
Sbjct: 62 MQEFVSKEEEASKESSQ--IQYSNISGSLSMALCYIQRVLRGPLPHPQARILCLQGSPDA 119
Query: 157 PEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLT 216
P QY+++MN+IFSAQR+ V ID+C +G+Q+SAFLQQA++ITGG++ KP Q DGLF+YL+
Sbjct: 120 PYQYISVMNSIFSAQRNGVVIDACVVGSQHSAFLQQATHITGGIYMKPPQPDGLFEYLMM 179
Query: 217 IFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+F TDL SR FLQLP+PVGVDFRASCFCHK TIDMG++CSVCLSI+CKH + CSTCG+ F
Sbjct: 180 VFTTDLFSRQFLQLPRPVGVDFRASCFCHKKTIDMGFVCSVCLSIFCKHHQTCSTCGATF 239
Query: 277 GQAQTQSDEPSATNRKRK 294
++S+ + T KRK
Sbjct: 240 ----SRSNSTTVTGMKRK 253
>gi|449527735|ref|XP_004170865.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
sativus]
Length = 187
Score = 264 bits (674), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 136/177 (76%), Positives = 155/177 (87%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
MASAPSKLY+DDVSL+VVLLDTNPFFWS+S+L FS+FL+HVLAFLN+IL LNQLN+VVVI
Sbjct: 1 MASAPSKLYADDVSLLVVLLDTNPFFWSTSALPFSKFLSHVLAFLNSILVLNQLNEVVVI 60
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL 120
TGY SC Y+Y+SSS N + +GRMP+LC LL+NLEEF+ DEQ K++P+G SL
Sbjct: 61 GTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSL 120
Query: 121 LSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPI 177
LSGSLSMALCYIQ+VFRSG LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV I
Sbjct: 121 LSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVCI 177
>gi|6714290|gb|AAF25986.1|AC013354_5 F15H18.15 [Arabidopsis thaliana]
Length = 590
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 167/312 (53%), Positives = 207/312 (66%), Gaps = 53/312 (16%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHV--------LAFLNAILTLN 52
M + SK YSDDVSL+V+LLDTNP FWS++S++FSQFL+HV LAFLNA+L LN
Sbjct: 1 MPAIASKQYSDDVSLLVLLLDTNPLFWSTTSITFSQFLSHVSVSNESIVLAFLNAVLGLN 60
Query: 53 QLNQVVVIATGYNSCDYVYDSSSTGN----QSVGNGRMPSLCATLLQNLEEFMNKDEQLG 108
QLNQVVVIATGY+SCDY+YDSS T N +S G G MP++ +LL+ LEEF+ KDE+L
Sbjct: 61 QLNQVVVIATGYSSCDYIYDSSLTSNHGNFESNGTG-MPAIFGSLLKKLEEFVTKDEELS 119
Query: 109 KQE-PEGRI-ACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG---PEQYVAI 163
K+E E RI +C L G++ C+ F + + + CL G +YVA+
Sbjct: 120 KEEVSEDRIPSCLLWPGTV----CFFLHFFSTCKI-----LSCLSGLIKRFCHSFRYVAV 170
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL-LTIFGTDL 222
MN+IFSAQR M + Y A NS GLF + TIF TDL
Sbjct: 171 MNSIFSAQRLM---RTQYSMAANS---------------------GLFCFAQKTIFATDL 206
Query: 223 HSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQ 282
HSR F+QLPKP+GVDFRASCFCHK TIDMGYICSVCLSI+C+H KKCSTCGSVFGQ++
Sbjct: 207 HSRGFVQLPKPIGVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLD 266
Query: 283 SDEPSATNRKRK 294
D SA+++KRK
Sbjct: 267 -DASSASDKKRK 277
>gi|218189967|gb|EEC72394.1| hypothetical protein OsI_05675 [Oryza sativa Indica Group]
gi|222622090|gb|EEE56222.1| hypothetical protein OsJ_05207 [Oryza sativa Japonica Group]
Length = 261
Score = 250 bits (638), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 151/279 (54%), Positives = 191/279 (68%), Gaps = 36/279 (12%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
A SKLYSDDVSL VV++DTNP FW++++L F+ F H++ ++N++L LN LN VVVIA G
Sbjct: 2 ASSKLYSDDVSLAVVVVDTNPLFWATAALPFADFFAHLIHYVNSLLLLNHLNHVVVIAAG 61
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA----CS 119
+SC Y++DSS + + + A + ++EF+ +D + G +A S
Sbjct: 62 LSSCTYIFDSSDASASGAAD--VAATFAKASRKMDEFIAEDAR--ATSSNGSVADGNAAS 117
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
LLSG+LS+ALCYIQRVFRSG HPQPR VPIDS
Sbjct: 118 LLSGALSLALCYIQRVFRSGTRHPQPR----------------------------VPIDS 149
Query: 180 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 239
C +G Q+SAFLQQASYITGGV+ KPQ+L+GLFQYL +F TDLHSR FL+LPK +GVDFR
Sbjct: 150 CIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRTFLRLPKTLGVDFR 209
Query: 240 ASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQ 278
ASCFCHK TIDMGY+CSVCLSI+CK+ KKCSTCGS F +
Sbjct: 210 ASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFNR 248
>gi|384252816|gb|EIE26291.1| transcription factor Tfb4 [Coccomyxa subellipsoidea C-169]
Length = 305
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 138/307 (44%), Positives = 191/307 (62%), Gaps = 27/307 (8%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS----------SSLSFSQFLTHVLAFLNAILTLNQ 53
APS DD L+VV+L+T+ WS+ +LS + L VL FLN L LN+
Sbjct: 2 APSD-EDDDSCLLVVVLETHEDLWSALADESESPVIGNLSLTTLLQQVLVFLNTFLALNE 60
Query: 54 LNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE-- 111
N++VVIA + + +Y S S + G P A EE + K L +++
Sbjct: 61 ANELVVIAACGDQSEVLYTSPSVHRERQG----PKHGAVTGNASEEVLKKLHALLQEQAA 116
Query: 112 -PEGRIA-CSLLSGSLSMALCYIQRVFRSGL----LHPQPRILCLQGSPDGPEQYVAIMN 165
P G A ++L+G+LS ALC I + + QPR+LCL+GSPD EQY+++MN
Sbjct: 117 LPVGDHARPAVLAGALSRALCLINKAQLASAGGSRTRKQPRLLCLKGSPDATEQYISVMN 176
Query: 166 AIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSR 225
AIF+AQR V ID+C LGA +SAFLQQA+++T G++ +P+ D L QYLLTIF D SR
Sbjct: 177 AIFAAQRCEVVIDACMLGASDSAFLQQAAHLTNGIYLRPKHKDALLQYLLTIFCGDAFSR 236
Query: 226 NFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDE 285
+FLQLP+P+GVDFRA+CFCH+ ID+GY+CSVCLSI+C+ + +CSTCG+ F + +
Sbjct: 237 SFLQLPRPIGVDFRAACFCHRRAIDLGYVCSVCLSIFCESITECSTCGTTF---KVVART 293
Query: 286 PSATNRK 292
P AT RK
Sbjct: 294 P-ATKRK 299
>gi|330789994|ref|XP_003283083.1| hypothetical protein DICPUDRAFT_9126 [Dictyostelium purpureum]
gi|325086950|gb|EGC40332.1| hypothetical protein DICPUDRAFT_9126 [Dictyostelium purpureum]
Length = 282
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 119/286 (41%), Positives = 170/286 (59%), Gaps = 28/286 (9%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-----------LSFSQFLTHVLAFLNAILTLNQLNQVVV 59
DD SL+V++LD N + W +SS + FS+FL HV+ F+NA L LNQ NQ+ +
Sbjct: 3 DDTSLLVIVLDCNIYSWGTSSPPLINTSKNNYIGFSKFLEHVMVFINAYLMLNQENQIAL 62
Query: 60 IATGYNSCDYVYDSS-----STGNQSVGNGRMPSLCATLLQNLEEF---MNKDEQLGKQE 111
I++ +++ + Q+ N + +L + +L+ L++ +N D+Q
Sbjct: 63 ISSKIGQSSFIFPETVEQLEQEETQTENNIQNITLQSQILKRLQKINIEVNNDQQ----- 117
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ 171
I S S +LSMALCYI R+ R + +PRIL SPD QY+++MN IFSAQ
Sbjct: 118 ---DIINSSFSAALSMALCYINRI-RKESPNLKPRILVFNISPDVSSQYISVMNCIFSAQ 173
Query: 172 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLP 231
+ +P+DSC L +S FLQQAS++T G++ KP + + L QYLLT F D SR L P
Sbjct: 174 KQSIPVDSCILSQTDSTFLQQASHLTNGIYLKPHKQELLSQYLLTTFLLDTQSRKSLAYP 233
Query: 232 KPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFG 277
VD+RASCFCHK +D+G++CSVCLSI+C H CSTCG+ F
Sbjct: 234 NLKSVDYRASCFCHKKIVDIGFVCSVCLSIFCNHFSSCSTCGTKFS 279
>gi|145340718|ref|XP_001415467.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575690|gb|ABO93759.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 285
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 122/296 (41%), Positives = 165/296 (55%), Gaps = 36/296 (12%)
Query: 10 SDDVSLVVVLLDTNPFFWSSS---------SLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
+DD SL+VVL++TNP +W++S + S L FLN+ LNQ N+ VI
Sbjct: 9 ADDKSLLVVLVETNPRYWAASEGKGDGTAAANGLSSVLEATTVFLNSFFALNQQNRAAVI 68
Query: 61 ATGYNSCDYVYDSS---STGNQSV-GNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
A + C Y+Y S + G+ S G+ + AT P R
Sbjct: 69 AVHDDGCHYLYTSPLELNAGDASASATGKKRTKTAT-------------------PSSRA 109
Query: 117 A-CSLLSGSLSMALCYIQR---VFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
A S +G+LS+ALCY R + + L +PRILCLQ S D P Y+++MNAIFSAQR
Sbjct: 110 AMSSPFAGALSLALCYCNRAQTLETAAGLRVRPRILCLQASQDNPTDYISMMNAIFSAQR 169
Query: 173 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 232
+PID+ LG + FLQQA++IT G + KP GL QYLL+ D+ SR+ L+LP
Sbjct: 170 QSIPIDAFALGEHDLPFLQQAAHITRGAYVKPTHGAGLLQYLLSTAALDMRSRSHLKLPA 229
Query: 233 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSA 288
GVDFRASCFCHK + +G++CSVCLSI+C+ C TCG+ F + PSA
Sbjct: 230 ARGVDFRASCFCHKRPVSVGFVCSVCLSIFCERRSSCDTCGADFAADAQVTSVPSA 285
>gi|449524543|ref|XP_004169281.1| PREDICTED: general transcription factor IIH subunit 3-like, partial
[Cucumis sativus]
Length = 121
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 95/123 (77%), Positives = 106/123 (86%), Gaps = 2/123 (1%)
Query: 175 VPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPV 234
VPIDSCY+G+ NSAFLQQASYITGGV+ KPQQ+DGLFQYL T+FGTDLHSR FLQLPK V
Sbjct: 1 VPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSV 60
Query: 235 GVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRK 294
GVDFRASCFCHK TIDMGY+CSVCLSI+CKH KKCSTCGSVFG+ + D S + KRK
Sbjct: 61 GVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELD--SVSKLKRK 118
Query: 295 TTD 297
T +
Sbjct: 119 TPE 121
>gi|328874423|gb|EGG22788.1| general transcription factor IIH [Dictyostelium fasciculatum]
Length = 304
Score = 197 bits (500), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 110/283 (38%), Positives = 166/283 (58%), Gaps = 26/283 (9%)
Query: 11 DDVSLVVVLLDTNPFFWS---------------SSSLSFSQFLTHVLAFLNAILTLNQLN 55
DD SL+V+++D N + W S ++ S F H++ F+NA L LNQ N
Sbjct: 8 DDTSLLVIIVDLNAYSWGKQVELAEQNIDSTSGSRFITLSTFFEHLVIFINAYLLLNQEN 67
Query: 56 QVVVIATGYNSCDYVYDSS--STGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPE 113
Q+ VI++ ++Y S+ T ++S+ SL N+ + + ++ L +E
Sbjct: 68 QIAVISSNVGESSFIYPSNHVDTKDKSISFKISQSL-----NNISKHLIEEIHLTSEENS 122
Query: 114 GRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRS 173
+ S ++S+ALCYI R+ + + RIL SPD QY+ +MN IFSAQ+
Sbjct: 123 SSSS---FSAAMSLALCYINRIKKDNST-IRSRILVFNISPDVSTQYIPVMNCIFSAQKQ 178
Query: 174 MVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKP 233
+P+DSC L + +S FLQQAS++T G++ +P + D L QYLL+ F D +SR FL +P
Sbjct: 179 SIPVDSCILTSTDSTFLQQASHLTNGIYLRPHRQDHLGQYLLSSFLIDSYSRKFLNVPTL 238
Query: 234 VGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
VD+RASCFCHK +D+G++CSVCLSIYCK+ C+TCG+ F
Sbjct: 239 KTVDYRASCFCHKKIVDIGFVCSVCLSIYCKYSSSCTTCGTKF 281
>gi|348676264|gb|EGZ16082.1| hypothetical protein PHYSODRAFT_508027 [Phytophthora sojae]
Length = 298
Score = 194 bits (494), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 102/267 (38%), Positives = 154/267 (57%), Gaps = 17/267 (6%)
Query: 15 LVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
L+V+++DTNP W ++ Q ++ L F+N+ L L++ N++V+IA
Sbjct: 21 LLVLVIDTNPVHWFAQGGSAADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSA 80
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMA 128
+Y + + + + A ++Q L++ D L +P R A ++ SLS A
Sbjct: 81 MLYPDPEQDDTTGSAEQAARVNAGVMQRLQQL--SDAPLDPAKP-NRTA---IAASLSRA 134
Query: 129 LCYIQRVFRSGLLHP--QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 186
LC+I R P +PRIL +Q SPD E Y+AIMN IFSAQ+ V +D+C L ++
Sbjct: 135 LCFINRAINE---EPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILANEH 191
Query: 187 SAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHK 246
S+F+QQA+Y+TGG+++KP GL QYL++I+ D R L+LP VDFRA CFCH+
Sbjct: 192 SSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHR 251
Query: 247 NTIDMGYICSVCLSIYCKHLKKCSTCG 273
I Y+C VCLS++C+ CSTCG
Sbjct: 252 EVISTAYVCPVCLSLFCEFRPICSTCG 278
>gi|301122235|ref|XP_002908844.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
gi|262099606|gb|EEY57658.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
Length = 293
Score = 192 bits (489), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/267 (37%), Positives = 152/267 (56%), Gaps = 17/267 (6%)
Query: 15 LVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
L+V+++DTNP W ++ Q ++ L F+N+ L L++ N++V+IA
Sbjct: 16 LLVLVIDTNPVHWFTNGGSAADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSA 75
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMA 128
+Y + + + + A +LQ +++ D L P + ++ SLS +
Sbjct: 76 MLYPDPEQDDTTGSAEQAAKVNAGVLQRMQQL--SDAPLDPATPNQ----TAIAASLSRS 129
Query: 129 LCYIQRVFRSGLLHP--QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 186
LC+I R P +PRIL +Q SPD E Y+AIMN IFSAQ+ V +D+C L ++
Sbjct: 130 LCFINRAINE---EPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILATEH 186
Query: 187 SAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHK 246
S+F+QQA+Y+TGG+++KP GL QYL++I+ D R L+LP VDFRA CFCH+
Sbjct: 187 SSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHR 246
Query: 247 NTIDMGYICSVCLSIYCKHLKKCSTCG 273
I Y+C VCLS++C+ CSTCG
Sbjct: 247 EVISTAYVCPVCLSLFCEFRPICSTCG 273
>gi|290987006|ref|XP_002676214.1| predicted protein [Naegleria gruberi]
gi|284089815|gb|EFC43470.1| predicted protein [Naegleria gruberi]
Length = 346
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 168/322 (52%), Gaps = 57/322 (17%)
Query: 10 SDDVSLVVVLLDTNPFFW--------------SSSSLSFSQFLTHVLAFLNAILTLNQLN 55
+D++ L+V+LLD NP+ W + S +SFSQF+ +L F+N LT+ +
Sbjct: 11 TDELELLVILLDINPYTWGKRKLDNEQQQSSSAKSLISFSQFINQLLVFINTFLTIQRNK 70
Query: 56 QVVVIATGYNSCDYV-----YDSSSTGNQSVGNGRMPSLCATLLQNL---------EEFM 101
++ VIA+ N+ + + S G + ++ S +T + N+ E+F
Sbjct: 71 KIAVIASSENNKSHFLFPNRFRSKKDGKHNHNQIQVKSTDSTSMLNMMGVKSGDDIEDFF 130
Query: 102 NKD----------------------EQLGKQEPEGRIACSL-----LSGSLSMALCYIQR 134
D E E +G S LSG+LSMALC+I R
Sbjct: 131 LNDIGFESVQNAVLSGLNSEEVTPSEDTEYMEDDGNHTTSTAQGFSLSGALSMALCFINR 190
Query: 135 VFRSGLL--HPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+ + L RIL Q SPD QY+++MNAIFSA++ + +D+C L +S FLQQ
Sbjct: 191 LEKEKPLGMSLNSRILTFQVSPDISSQYISVMNAIFSAEKMSIMLDACVLSNDDSTFLQQ 250
Query: 193 ASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMG 252
A ++TGG + KPQ+ +GL QYLLTIF + R+++QLP VDFRASCF + ID G
Sbjct: 251 ACFLTGGNYLKPQRQEGLIQYLLTIFMLEKSLRSYIQLPVQNTVDFRASCFETRKPIDDG 310
Query: 253 YICSVCLSIYCKHLKKCSTCGS 274
Y+C VCLSI+ H CSTC S
Sbjct: 311 YVCPVCLSIFSSHKPVCSTCAS 332
>gi|308798981|ref|XP_003074271.1| basal transcription factor complex subunit-related (ISS)
[Ostreococcus tauri]
gi|116000442|emb|CAL50122.1| basal transcription factor complex subunit-related (ISS)
[Ostreococcus tauri]
Length = 319
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 116/305 (38%), Positives = 162/305 (53%), Gaps = 40/305 (13%)
Query: 10 SDDVSLVVVLLDTNPFFWSSS---------SLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
+DD SL++VL++TNP W +S S S L + FLNA LNQ N+ VV+
Sbjct: 10 TDDRSLLIVLVETNPRTWETSEGKGEGTPASRGLSSVLGATITFLNAFFALNQQNRAVVV 69
Query: 61 ATGYNSCDYVY------DSSSTGNQS--------VGNGRMP---SLCATLLQNLEEFMNK 103
A + C Y+Y ++ G+++ VG G P T+L+ L E +N
Sbjct: 70 AVHGDGCHYLYTSPLGVETDEDGDEAEDARWANKVG-GLDPLQSEAGPTILRRLGE-LNA 127
Query: 104 DE--------QLGKQEPEGRIACSLLSGSLSMALCYIQR---VFRSGLLHPQPRILCLQG 152
E + K + + A S +G+LS+ALCY R + + L +PRILCLQ
Sbjct: 128 AETGSSATGAKRDKADSDDGPATSPFAGALSLALCYCNRAQALENAAGLRSKPRILCLQA 187
Query: 153 SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQ 212
S D P Y+ +MNAIFSAQR +P+D+ LG +S F+QQA++IT G + KP DGL Q
Sbjct: 188 SQDNPTDYIPMMNAIFSAQRQSIPVDAFALGEHDSPFMQQAAHITRGAYVKPTLGDGLLQ 247
Query: 213 YLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDM-GYICSVCLSIYCKHLKKCST 271
YLL+ DL SR FL+LP+ FRAS ++CSVCLS++C C T
Sbjct: 248 YLLSTAVMDLRSRAFLKLPQAKASTFRASVLLPTTARQASAFVCSVCLSVFCDGRPACDT 307
Query: 272 CGSVF 276
CG+ F
Sbjct: 308 CGTTF 312
>gi|115609530|ref|XP_791329.2| PREDICTED: general transcription factor IIH subunit 3-like
[Strongylocentrotus purpuratus]
Length = 313
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 163/287 (56%), Gaps = 30/287 (10%)
Query: 14 SLVVVLLDTNPFFWSSSS--------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+LVV+++D NP +W S L+ SQ + V+ F+N+ L +++ N+V VIA+ N
Sbjct: 11 NLVVIVIDVNPVWWGKQSHHKQQKDGLALSQCMDAVVVFINSHLMMDRRNKVAVIASHTN 70
Query: 66 SCDYVY-----------DSSSTGNQSVGNGR---MPSLCATLLQNLEEFMNKDEQLGKQE 111
++Y D ++ +G+ S+ T+++ L+ +++ + G
Sbjct: 71 ESRFLYPKKTSDAFDDGDDQREQDEMSSDGKYEVFASINDTVMEELKNLVDESKSWGLSH 130
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFS 169
+ +LL+GSL+MALCYI RV + + + RIL L+ + D QY+ MN IF+
Sbjct: 131 TD-----TLLAGSLAMALCYIHRVXKECAVGEKIKSRILVLKAADDSASQYMNFMNVIFT 185
Query: 170 AQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQ 229
AQ+ +PID+C L ++S+ LQQA ITGG + K GL QYLL ++ R L
Sbjct: 186 AQKQNIPIDACILD-KDSSLLQQACDITGGKYLKLLSTTGLLQYLLWVYLPSPSQRESLV 244
Query: 230 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
LP + VD+RA+CFCH+ ID+GY+CSVCLSI+C + CSTC + F
Sbjct: 245 LPPAIHVDYRAACFCHRILIDVGYVCSVCLSIFCTYSPICSTCHTAF 291
>gi|115655410|ref|XP_001194121.1| PREDICTED: general transcription factor IIH subunit 3-like
[Strongylocentrotus purpuratus]
Length = 391
Score = 182 bits (463), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 105/284 (36%), Positives = 157/284 (55%), Gaps = 26/284 (9%)
Query: 14 SLVVVLLDTNPFFWSSSS--------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+LVV+++D NP +W S L+ SQ + V+ F+N+ L +++ N+V VIA+ N
Sbjct: 91 NLVVIVIDVNPVWWGKQSHHKQQKDGLALSQCMDAVVVFINSHLMMDRRNKVAVIASHTN 150
Query: 66 SCDYVY-----------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEG 114
++Y D ++ +G+ + +EE N L + P
Sbjct: 151 ESRFLYPKKTSDAFDDGDDQREQDEMSSDGKYEVFASINDTVMEELKN----LVDENPTV 206
Query: 115 RIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQR 172
+LL+GSL+MALCYI RV + + + RIL L+ + D QY+ MN IF+AQ+
Sbjct: 207 SHTDTLLAGSLAMALCYIHRVEKECAVGEKIKSRILVLKAADDSASQYMNFMNVIFTAQK 266
Query: 173 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 232
+PID+C L ++S+ LQQA ITGG + K GL QYLL ++ R L LP
Sbjct: 267 QNIPIDACILD-KDSSLLQQACDITGGKYLKLLSTTGLLQYLLWVYLPSPSQRESLVLPP 325
Query: 233 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+ VD+RA+CFCH+ ID+GY+CSVCLSI+C + CSTC + F
Sbjct: 326 AIHVDYRAACFCHRILIDVGYVCSVCLSIFCTYSPICSTCHTAF 369
>gi|417398730|gb|JAA46398.1| Putative rna polymer [Desmodus rotundus]
Length = 308
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/286 (37%), Positives = 166/286 (58%), Gaps = 20/286 (6%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKGSQFTLSKCMDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G+ P LC + LL E + + + + K +
Sbjct: 65 QESRFLYPGRNGRMGDFFGDPGKTPELCPSGSKDGKYELLTAANEVIVDEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSA 170
+G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN IF+A
Sbjct: 125 KGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVVKAAEDSALQYMNFMNVIFAA 184
Query: 171 QRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQL 230
Q+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R L L
Sbjct: 185 QKQSILIDACVLDS-DSGLLQQACDITGGMYLKVPQVPSLLQYLLWVFLPDQDQRPQLTL 243
Query: 231 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
P PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 244 PPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|334327155|ref|XP_001375408.2| PREDICTED: general transcription factor IIH subunit 3-like, partial
[Monodelphis domestica]
Length = 308
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 164/289 (56%), Gaps = 27/289 (9%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGYN 65
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 DELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVMGNSHLFMNRSNKLAVIASHIQ 64
Query: 66 SCDYVYDSSST---------GNQSV-------GNGRMPSLCATLLQNLEEFMNKDEQLGK 109
++Y + GN + +G+ L A EE + + K
Sbjct: 65 ESRFLYPGKNWKFGDIFGDPGNSATEYNPSGSKDGKYELLTAANEAITEEI---KDLMTK 121
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAI 167
+ EG+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN I
Sbjct: 122 SDMEGQHTETLLAGSLAKALCYIHRMSKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVI 181
Query: 168 FSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF 227
F+AQ+ + ID+C L A +S LQQA ITGG++ K Q+ L QYLL +F D R+
Sbjct: 182 FAAQKQNIVIDACVLDA-DSGLLQQACDITGGIYLKVPQMPSLLQYLLWVFLPDQDQRSQ 240
Query: 228 LQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 241 LNLPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|328852556|gb|EGG01701.1| hypothetical protein MELLADRAFT_110826 [Melampsora larici-populina
98AG31]
Length = 316
Score = 181 bits (459), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 162/290 (55%), Gaps = 30/290 (10%)
Query: 10 SDDVSLVVVLLDTNPFFWS------SSSLSF---SQFLTHVLAFLNAILTLNQLNQVVVI 60
+D L++++LD NP WS +SS F + FL VL F N L++ N + +
Sbjct: 5 TDPADLLIIILDLNPSSWSNFKHQSTSSEEFIELTSFLETVLVFSNTHLSIRHENSLAIY 64
Query: 61 ATGYNSCDYVYDSSSTG--NQSVGNGRMPSLCAT--LLQN-----LEEFMN-KDEQLGKQ 110
A+ + + +Y + G N SV R + T +L + +++ M D+ L
Sbjct: 65 ASMIGTSELLYSTLENGVKNDSVSGHRDSNTYQTFRVLDDCVSDCVKKLMKVNDQDLKSG 124
Query: 111 EPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ----PRILCLQGSPDGPEQYVAIMNA 166
+P G + +L+ ALC+I RV + P+ PRIL + SPD P QY+ +MN
Sbjct: 125 QPTGTV------NALAKALCHINRVTKEET-RPKDSLKPRILIISISPDSPGQYIPMMNC 177
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 226
IFSAQ+S +PID C + +++ FLQQASY+T G++++ ++ L QYL IF + R
Sbjct: 178 IFSAQKSCIPIDVCKITGEDAVFLQQASYLTNGIYYRLEKPKALIQYLTMIFLPGVSIRK 237
Query: 227 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
L LP+ VD RA+CFCH+ ID+GY+CSVCLSI+C + CSTC + F
Sbjct: 238 SLNLPQQEEVDLRAACFCHRKIIDLGYVCSVCLSIFCTPIPVCSTCRTKF 287
>gi|395513842|ref|XP_003761131.1| PREDICTED: general transcription factor IIH subunit 3 [Sarcophilus
harrisii]
Length = 316
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 165/295 (55%), Gaps = 33/295 (11%)
Query: 8 LYSDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIAT 62
L D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 9 LADDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVMGNSHLFMNRSNKLAVIAS 68
Query: 63 GYNSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNK 103
++Y D + +G++ + + + + +++ M K
Sbjct: 69 HIQESRFLYPGKNWKFGDFFGDPGCSSADYNPSGSKDGKYELLTAANEVITEEIKDLMTK 128
Query: 104 DEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYV 161
+ EG+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+
Sbjct: 129 SDM------EGQRTETLLAGSLAKALCYIHRMGKEVKDNQEMKSRILVIKAAEDSALQYM 182
Query: 162 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 221
MN IF+AQ+ + ID+C L +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 183 NFMNVIFAAQKQNIVIDACVLDT-DSGLLQQACDITGGIYLKVPQMLSLLQYLLWVFLPD 241
Query: 222 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 242 QDQRSQLNLPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 296
>gi|118601766|ref|NP_001073057.1| general transcription factor IIH subunit 3 [Bos taurus]
gi|426247186|ref|XP_004017367.1| PREDICTED: general transcription factor IIH subunit 3 [Ovis aries]
gi|122131719|sp|Q05B56.1|TF2H3_BOVIN RecName: Full=General transcription factor IIH subunit 3; AltName:
Full=General transcription factor IIH polypeptide 3
gi|115545470|gb|AAI22793.1| General transcription factor IIH, polypeptide 3, 34kDa [Bos taurus]
gi|296478493|tpg|DAA20608.1| TPA: general transcription factor IIH subunit 3 [Bos taurus]
Length = 309
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 164/290 (56%), Gaps = 27/290 (9%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCATLLQNLEEFMNKDEQLG 108
++Y + GN S +G+ L A EE + +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPSSEFTPSGSKDGKYELLTAANEVIAEEI---KDLMT 121
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNA 166
K + EG+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN
Sbjct: 122 KSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV 181
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 226
IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+
Sbjct: 182 IFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRS 240
Query: 227 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 241 QLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|66730451|ref|NP_001019407.1| general transcription factor IIH subunit 3 [Rattus norvegicus]
gi|81888006|sp|Q561R7.1|TF2H3_RAT RecName: Full=General transcription factor IIH subunit 3; AltName:
Full=General transcription factor IIH polypeptide 3
gi|62531219|gb|AAH93380.1| General transcription factor IIH, polypeptide 3 [Rattus norvegicus]
gi|149063248|gb|EDM13571.1| general transcription factor IIH, polypeptide 3 [Rattus norvegicus]
Length = 309
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 164/293 (55%), Gaps = 33/293 (11%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ NA L +N+ NQ+ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVMVLANAHLFMNRSNQLAVIASHI 64
Query: 65 NSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE 105
++Y D + +G++ + + + + +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNALPDCNPSGSKDGKYELLTAANEVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R ++ + + RIL ++ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRASKAVKDNQEMKSRILVIKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 179 MNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD 237
Query: 224 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
R+ L LP P+ VD+RA+CFCH++ I++GY+CSVCLSI+C C+TC + F
Sbjct: 238 QRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|440898315|gb|ELR49840.1| General transcription factor IIH subunit 3, partial [Bos grunniens
mutus]
Length = 305
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 164/290 (56%), Gaps = 27/290 (9%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 1 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 60
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCATLLQNLEEFMNKDEQLG 108
++Y + GN S +G+ L A EE + +
Sbjct: 61 QESRFLYPGKNGRLGDFFGDPGNPSSEFTPSGSKDGKYELLTAANEVIAEEI---KDLMT 117
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNA 166
K + EG+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN
Sbjct: 118 KSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV 177
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 226
IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+
Sbjct: 178 IFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRS 236
Query: 227 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 237 QLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 286
>gi|325190435|emb|CCA24938.1| general transcription factor IIH subunit putative [Albugo laibachii
Nc14]
Length = 288
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 99/270 (36%), Positives = 160/270 (59%), Gaps = 18/270 (6%)
Query: 14 SLVVVLLDTNPFFW----------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
+ +V++LDTNP W S SL F + + VL F+++ L LN+ N+++++A
Sbjct: 7 AFLVLILDTNPSHWWRNVDGMPTDQSDSL-FQRTVKSVLIFVSSYLLLNRSNRLILLAAH 65
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
S +Y + + ++S ++ + +L+NL + + + + + +SG
Sbjct: 66 AGSSVTLYPDALSESESESGDQIGLIRNIVLKNLLALSEQTHDVTSK------STTSISG 119
Query: 124 SLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 183
S+S LC + RV + PRI +Q SPD PE Y++IMN+IFSAQ+ V ID+C L
Sbjct: 120 SISRGLCCMNRVLKENA-QLCPRIFVIQRSPDVPEHYISIMNSIFSAQKKTVAIDACILS 178
Query: 184 AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCF 243
++S F+QQA+Y+TGG+++KP+ +DGL QYL+T++ D + R L+ P VDFRA CF
Sbjct: 179 EEHSPFMQQATYLTGGIYYKPRVIDGLLQYLITLYLPDPNMRKMLRFPSQESVDFRAMCF 238
Query: 244 CHKNTIDMGYICSVCLSIYCKHLKKCSTCG 273
CHK + ++C VCLS++C+ CSTCG
Sbjct: 239 CHKKAVSTAFVCPVCLSLFCQFQPICSTCG 268
>gi|348554273|ref|XP_003462950.1| PREDICTED: general transcription factor IIH subunit 3-like [Cavia
porcellus]
Length = 309
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 164/293 (55%), Gaps = 33/293 (11%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + VL N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVLVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGN-------QSVGNGRMPSLCA---TLLQNLEEFMNKDE 105
+ ++Y + GN +G+ L A +++ +++ M K +
Sbjct: 65 HESRFLYPGKNGRLGDFFGDAGNPPPEYNPSGSKDGKYELLTAANEVIVEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R+ + + + RIL L+ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVLKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
MN IF+AQ+ + ID+C L +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 179 MNVIFAAQKQNILIDACVLDT-DSGLLQQACDITGGLYLKVPQMTSLLQYLLWVFLPDQD 237
Query: 224 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
R L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 238 QRAQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|194042856|ref|XP_001927574.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Sus scrofa]
Length = 309
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 165/290 (56%), Gaps = 27/290 (9%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY---------------DSSSTGNQS-VGNGRMPSLCATLLQNLEEFMNKDEQLG 108
++Y + SS N S +G+ L A EE + +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPSSEFNPSGSKDGKYELLTAANDVIAEEI---KDLMT 121
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNA 166
K + EG+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN
Sbjct: 122 KSDIEGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNV 181
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 226
IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+
Sbjct: 182 IFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRS 240
Query: 227 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 241 QLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|149633387|ref|XP_001507590.1| PREDICTED: general transcription factor IIH subunit 3-like
[Ornithorhynchus anatinus]
Length = 311
Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 166/290 (57%), Gaps = 23/290 (7%)
Query: 8 LYSDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIAT 62
L ++++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 LSDEELNLLVIVVDTNPIWWGKQALRESQFTLSKCIDAVMVMGNSHLLMNRTNKLAVIAS 64
Query: 63 GYNSCDYVY------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKD--EQLG 108
++Y D+ S+ + +G LL E + ++ + +
Sbjct: 65 HIQESRFLYPGKNWKLGEFSGDACSSPTEYNPSGSKDGK-YELLTTANEVITEEIKDLMT 123
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNA 166
K + +G+ +LL+GSL+ ALCYI R+ + + RIL ++ S D QY+ MN
Sbjct: 124 KSDMKGQHTETLLAGSLAKALCYIHRMNKEVKDSQEMRSRILVIKASEDSALQYMNFMNV 183
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 226
IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+
Sbjct: 184 IFAAQKQNILIDACVLDS-DSGLLQQACDITGGIYLKVPQMPSLLQYLLWVFLPDQDQRS 242
Query: 227 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 243 QLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 292
>gi|358060458|dbj|GAA93863.1| hypothetical protein E5Q_00509 [Mixia osmundae IAM 14324]
Length = 331
Score = 177 bits (449), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 153/278 (55%), Gaps = 17/278 (6%)
Query: 15 LVVVLLDTNPFFWSSSS--------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
L+ +++DTN W S+ LS S+ L +L FLNA L L N+++V G
Sbjct: 10 LLCIIIDTNVLAWHESAQSSESGDRLSLSEALETLLVFLNAHLALRDQNELLVYGAGPGH 69
Query: 67 CDYVYDS------SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ-EPEGRIACS 119
+ +Y S SS + S N R S Q + Q+ ++ EP+ +
Sbjct: 70 SEMIYSSFDDQGESSADHASETNERYASTFPRFRQVDTQVSKAVGQMMRELEPDTDAPPA 129
Query: 120 LLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
++S +L+ LC+I R+ R H +PR+L L S D QY+ +MN IFSAQ++ VPID
Sbjct: 130 IVS-ALARTLCHINRISREETKHTIKPRVLLLSVSHDSSSQYIPLMNCIFSAQKANVPID 188
Query: 179 SCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDF 238
C + ++ FLQQA+Y++ G+++K ++ GL QYL+ F + SR L LP VD
Sbjct: 189 VCKIYGDDAVFLQQAAYLSSGIYYKLEKRAGLLQYLMMTFLPGVTSRKLLNLPSQDAVDL 248
Query: 239 RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
RA+CFCH+ +D+G++CSVCLSI+C C TC + F
Sbjct: 249 RAACFCHQRIVDIGFVCSVCLSIFCTPRPSCLTCRTKF 286
>gi|395846791|ref|XP_003796077.1| PREDICTED: general transcription factor IIH subunit 3 [Otolemur
garnettii]
Length = 309
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 166/293 (56%), Gaps = 33/293 (11%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVMGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE 105
+ ++Y + + TG++ + + +++ +++ M K +
Sbjct: 65 HESRFLYPGKNGRLGDFFGDPGNPPPEFNPTGSKDGKYELLTAANEVIVEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 179 MNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD 237
Query: 224 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 238 QRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|190358598|ref|NP_001121894.1| uncharacterized protein LOC100151595 [Danio rerio]
Length = 296
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 157/277 (56%), Gaps = 15/277 (5%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
DD++++V++LD NP +W + + S L ++ NA L +++ N++ VI + Y+
Sbjct: 5 DDINILVIVLDVNPVWWGQQAQREPKFTLSACLDSLMVLANAHLVMSRTNKLAVITSLYH 64
Query: 66 SCDYVYDSSS--TGNQSVGN--GRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLL 121
++Y S +G + N G+ L T EE N E + E G +LL
Sbjct: 65 ESHFLYPSKQWRSGEEISANPDGKYELLSVTNDLFAEEIRNLME---RAEVSGSQTETLL 121
Query: 122 SGSLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
+ SL+ ALCYI R+ + + RIL ++ + D QY+ MN IF+AQ+ + ID+
Sbjct: 122 AVSLARALCYINRISKDVQAGQEVKSRILVIKAAEDSTSQYMNFMNVIFAAQKKNILIDA 181
Query: 180 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 239
C L + +S LQQA ITGG++ + Q L QYLL +F D R+ L LP PV VD+R
Sbjct: 182 CVLDS-DSGLLQQACDITGGLYLRVPQKVALTQYLLWVFLPDAEQRSQLLLPPPVHVDYR 240
Query: 240 ASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
A+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 241 AACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 277
>gi|301754663|ref|XP_002913183.1| PREDICTED: general transcription factor IIH subunit 3-like
[Ailuropoda melanoleuca]
Length = 309
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 165/293 (56%), Gaps = 33/293 (11%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCAT---LLQNLEEFMNKDE 105
++Y + GN S +G+ A + + +++ M K E
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPSSEFSPSGSKDGKYELFTAANEIIAEEIKDLMTKSE 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ +
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNL 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 179 MNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD 237
Query: 224 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 238 QRSQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|114647703|ref|XP_001170519.1| PREDICTED: general transcription factor IIH subunit 3 isoform 3
[Pan troglodytes]
gi|397481834|ref|XP_003812142.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Pan paniscus]
gi|410221584|gb|JAA08011.1| general transcription factor IIH, polypeptide 3, 34kDa [Pan
troglodytes]
gi|410252228|gb|JAA14081.1| general transcription factor IIH, polypeptide 3, 34kDa [Pan
troglodytes]
gi|410294034|gb|JAA25617.1| general transcription factor IIH, polypeptide 3, 34kDa [Pan
troglodytes]
gi|410334639|gb|JAA36266.1| general transcription factor IIH, polypeptide 3, 34kDa [Pan
troglodytes]
Length = 308
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 165/286 (57%), Gaps = 20/286 (6%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G +P + LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNLPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSA 170
+G+ +LL+GSL+ ALCYI R+ + + RIL ++ + D QY+ MN IF+A
Sbjct: 125 KGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAA 184
Query: 171 QRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQL 230
Q+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L L
Sbjct: 185 QKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLIL 243
Query: 231 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
P PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 244 PPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|291414274|ref|XP_002723381.1| PREDICTED: general transcription factor IIH, polypeptide 3, 34kDa
[Oryctolagus cuniculus]
Length = 309
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 165/293 (56%), Gaps = 33/293 (11%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ V+A+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVVASHI 64
Query: 65 NSCDYVY---------------DSSSTGNQS-VGNGRMPSLCA---TLLQNLEEFMNKDE 105
++Y + SS N S +G+ L A +++ + + M K +
Sbjct: 65 QESRFLYPGKNGRVGDFFGDPGNPSSEFNPSGSKDGKYELLTAANEVIVEEIRDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
MN IF+AQ+ + ID+C L +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 179 MNVIFAAQKQNILIDACVLDT-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD 237
Query: 224 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 238 QRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCSFSPICTTCETAF 290
>gi|149720731|ref|XP_001498402.1| PREDICTED: general transcription factor IIH subunit 3-like [Equus
caballus]
Length = 309
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 167/293 (56%), Gaps = 33/293 (11%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRCNKLAVIASHI 64
Query: 65 NSCDYVY---------------DSSSTGNQS-VGNGRMPSLCA---TLLQNLEEFMNKDE 105
++Y ++ S N S +G+ L A +++ +++ M K +
Sbjct: 65 QESRFLYPGKHGRLGDFFGDPGNAPSEFNPSGSKDGKYELLTAANEVIVEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDTALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 179 MNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD 237
Query: 224 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 238 QRSQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|363739821|ref|XP_001235063.2| PREDICTED: general transcription factor IIH subunit 3 [Gallus
gallus]
Length = 307
Score = 176 bits (445), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 164/291 (56%), Gaps = 32/291 (10%)
Query: 11 DDVSLVVVLLDTNPFFWS-----SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+++SL+V+++DTNP +W + + S+ + + N+ L +++ N++ +IA+
Sbjct: 5 EELSLLVIVIDTNPIWWGKRAQGEAEFTLSKCMDAAMVLGNSHLFMSRTNRLALIASHTQ 64
Query: 66 SCDYVY--------DSSSTGNQSV-------GNGRMPSLCA---TLLQNLEEFMNKDEQL 107
++Y D G SV +G+ L A + + +++ M K + +
Sbjct: 65 ESRFLYPGKRWASADLLGDGGNSVESNCSGSKDGKYELLTAINDAIAEEIKDLMTKTDMM 124
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMN 165
G+Q +LL+GSL+ ALCYI ++ + + + RIL ++ + D QY+ MN
Sbjct: 125 GQQTE------TLLAGSLAKALCYINKISKEVKANQEMKSRILVIKAAEDSALQYMNFMN 178
Query: 166 AIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSR 225
IF+AQ+ + ID+C L + +S LQQA ITGG++ K L L QYLL +F D R
Sbjct: 179 VIFAAQKQSILIDACVLDS-DSGLLQQACDITGGIYLKVPHLPSLLQYLLWVFLPDQEQR 237
Query: 226 NFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C CSTC + F
Sbjct: 238 SQLVLPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICSTCETAF 288
>gi|31088894|ref|NP_852075.1| general transcription factor IIH subunit 3 [Mus musculus]
gi|22654149|sp|Q8VD76.1|TF2H3_MOUSE RecName: Full=General transcription factor IIH subunit 3; AltName:
Full=Basic transcription factor 2 34 kDa subunit;
Short=BTF2 p34; AltName: Full=General transcription
factor IIH polypeptide 3; AltName: Full=TFIIH basal
transcription factor complex p34 subunit
gi|17028402|gb|AAH17515.1| General transcription factor IIH, polypeptide 3 [Mus musculus]
gi|74228938|dbj|BAE21939.1| unnamed protein product [Mus musculus]
gi|148687628|gb|EDL19575.1| general transcription factor IIH, polypeptide 3 [Mus musculus]
Length = 309
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 163/293 (55%), Gaps = 33/293 (11%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ NQ+ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCMDAVMVLANSHLFMNRSNQLAVIASHI 64
Query: 65 NSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE 105
+Y D + +G++ + + + +++ M K +
Sbjct: 65 QESRLLYPGKNGGLGDFFGDPGNALPDCNPSGSKDGKYELLTVANEVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI RV ++ + + RIL ++ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRVNKAVKDNQEMKSRILVIKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 179 MNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD 237
Query: 224 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
R+ L LP P+ VD+RA+CFCH++ I++GY+CSVCLSI+C C+TC + F
Sbjct: 238 QRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|432873950|ref|XP_004072398.1| PREDICTED: general transcription factor IIH subunit 3-like [Oryzias
latipes]
Length = 300
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 106/282 (37%), Positives = 156/282 (55%), Gaps = 19/282 (6%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
D+V+L+V+++D NP +W + + S+ L V+ N+ + L + N++ VIA+
Sbjct: 4 EDEVNLLVIVVDVNPIWWGQQAQREPEFTLSKCLDGVMVMGNSHMALTRTNKLAVIASHC 63
Query: 65 NSCDYVYDSSSTG--------NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
++Y S S G S +G+ L EE N L K E G
Sbjct: 64 QDSHFLYPSKSLGGGGGAAEDTSSSRDGKYELLAVANSAIAEEIRNV---LSKTEVRGNS 120
Query: 117 ACSLLSGSLSMALCYIQRVFRSGLL--HPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSM 174
+LL+GSL+ ALCYI RV + + + RIL ++ + D QY+ MN IF+AQ+
Sbjct: 121 TDTLLAGSLAKALCYIYRVSKELDVGQEIKSRILVIKAAEDCALQYMNFMNVIFAAQKQN 180
Query: 175 VPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPV 234
+ ID+C L + +S LQQA ITGG++ K Q L QYLL +F D R+ L LP P
Sbjct: 181 ILIDACVLDS-DSGLLQQACDITGGLYLKIPQKLALTQYLLWVFLPDSEQRSQLVLPPPA 239
Query: 235 GVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 240 HVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 281
>gi|50540194|ref|NP_001002564.1| general transcription factor IIH, polypeptide 3 [Danio rerio]
gi|49900709|gb|AAH76236.1| General transcription factor IIH, polypeptide 3 [Danio rerio]
Length = 296
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 156/277 (56%), Gaps = 15/277 (5%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
DD++++V++LD NP +W + + S L ++ NA L +++ N++ VI + Y+
Sbjct: 5 DDINILVIVLDVNPVWWGQQAQREPKFTLSACLDSLMVLANAHLVMSRTNKLAVITSLYH 64
Query: 66 SCDYVYDSSS--TGNQSVGN--GRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLL 121
++Y S +G + N G+ L T EE N E + E G +LL
Sbjct: 65 ESHFLYPSKQWRSGEEISANPDGKYELLSVTNDLFAEEIRNLME---RAEVSGSQTETLL 121
Query: 122 SGSLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
+ SL+ ALCYI R+ + + RIL ++ + D QY+ MN IF+AQ+ + ID+
Sbjct: 122 AVSLARALCYINRISKDVQAGQEVKSRILVIKAAEDSTSQYMNFMNVIFAAQKKNILIDA 181
Query: 180 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 239
C L + +S LQQA ITGG++ + Q L QYLL F D R+ L LP PV VD+R
Sbjct: 182 CVLDS-DSGLLQQACDITGGLYLRVPQKVALTQYLLWAFLPDAEQRSQLLLPPPVHVDYR 240
Query: 240 ASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
A+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 241 AACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 277
>gi|1039318|emb|CAA82909.1| basic transcription factor 2, 35 kD subunit [Homo sapiens]
Length = 303
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 165/286 (57%), Gaps = 20/286 (6%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G P + LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSA 170
+G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN IF+A
Sbjct: 125 KGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAA 184
Query: 171 QRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQL 230
Q+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L L
Sbjct: 185 QKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLIL 243
Query: 231 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
P PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 244 PPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|344297280|ref|XP_003420327.1| PREDICTED: general transcription factor IIH subunit 3-like
[Loxodonta africana]
Length = 309
Score = 175 bits (443), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 166/293 (56%), Gaps = 33/293 (11%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY---------------DSSSTGNQS-VGNGRMPSLCA---TLLQNLEEFMNKDE 105
+ ++Y + S N S +G+ L A + + +++ M K +
Sbjct: 65 HESRFLYPGKNGRLGDFFGEASNPPSEFNPSGSKDGKYELLTAANEVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+
Sbjct: 125 IKGQHME------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 179 MNVIFAAQKQSILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD 237
Query: 224 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 238 QRSQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|335775838|gb|AEH58705.1| general transcription factor IIH subunit-like protein [Equus
caballus]
Length = 302
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 165/288 (57%), Gaps = 30/288 (10%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
D+++L+V+++DTNP +W +L SQ VL N+ L +N+ N++ VIA+ +
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQDAVMVLG--NSHLFMNRCNKLAVIASHIQESRF 62
Query: 70 VY---------------DSSSTGNQS-VGNGRMPSLCA---TLLQNLEEFMNKDEQLGKQ 110
+Y ++ S N S +G+ L A +++ +++ M K + G+
Sbjct: 63 LYPGKHGRLGDFFGDPGNAPSEFNPSGSKDGKYELLTAANEVIVEEIKDLMTKSDIKGQH 122
Query: 111 EPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIF 168
+LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN IF
Sbjct: 123 TE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDTALQYMNFMNVIF 176
Query: 169 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFL 228
+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L
Sbjct: 177 AAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQL 235
Query: 229 QLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 236 ILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 283
>gi|19923732|ref|NP_001507.2| general transcription factor IIH subunit 3 isoform a [Homo sapiens]
gi|50403772|sp|Q13889.2|TF2H3_HUMAN RecName: Full=General transcription factor IIH subunit 3; AltName:
Full=Basic transcription factor 2 34 kDa subunit;
Short=BTF2 p34; AltName: Full=General transcription
factor IIH polypeptide 3; AltName: Full=TFIIH basal
transcription factor complex p34 subunit
gi|23955948|gb|AAN40702.1| general transcription factor IIH, polypeptide 3, 34kDa [Homo
sapiens]
gi|40850955|gb|AAH65250.1| General transcription factor IIH, polypeptide 3, 34kDa [Homo
sapiens]
gi|119618832|gb|EAW98426.1| general transcription factor IIH, polypeptide 3, 34kDa, isoform
CRA_a [Homo sapiens]
gi|189053764|dbj|BAG36016.1| unnamed protein product [Homo sapiens]
gi|208966364|dbj|BAG73196.1| general transcription factor IIH, polypeptide 3, 34kDa [synthetic
construct]
Length = 308
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 165/286 (57%), Gaps = 20/286 (6%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G P + LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSA 170
+G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN IF+A
Sbjct: 125 KGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAA 184
Query: 171 QRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQL 230
Q+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L L
Sbjct: 185 QKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLIL 243
Query: 231 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
P PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 244 PPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|57105536|ref|XP_534644.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Canis lupus familiaris]
Length = 308
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 106/289 (36%), Positives = 165/289 (57%), Gaps = 26/289 (8%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGNQS------VGNGRMPSLCATLLQNLEEFMNKDEQLGK 109
++Y + GN S +G+ A +EE KD + K
Sbjct: 65 QESRFLYPGKNGKLGDFFGDPGNPSEFSPSGSKDGKYELFTAANEVIVEEI--KDLMI-K 121
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAI 167
+ +G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN I
Sbjct: 122 SDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVI 181
Query: 168 FSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF 227
F+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+
Sbjct: 182 FAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQ 240
Query: 228 LQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 241 LILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|167773979|gb|ABZ92424.1| general transcription factor IIH, polypeptide 3, 34kDa [synthetic
construct]
Length = 308
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 165/286 (57%), Gaps = 20/286 (6%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALQESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G P + LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSA 170
+G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN IF+A
Sbjct: 125 KGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAA 184
Query: 171 QRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQL 230
Q+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L L
Sbjct: 185 QKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLIL 243
Query: 231 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
P PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 244 PPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|355564808|gb|EHH21308.1| hypothetical protein EGK_04329, partial [Macaca mulatta]
gi|355786640|gb|EHH66823.1| hypothetical protein EGM_03880, partial [Macaca fascicularis]
Length = 308
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 164/286 (57%), Gaps = 20/286 (6%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G P + LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSA 170
+G+ +LL+GSL+ ALCYI R+ + + RIL ++ + D QY+ MN IF+A
Sbjct: 125 KGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAA 184
Query: 171 QRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQL 230
Q+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L L
Sbjct: 185 QKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLIL 243
Query: 231 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
P PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 244 PPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|402888055|ref|XP_003907392.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Papio anubis]
gi|426374588|ref|XP_004054152.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Gorilla gorilla gorilla]
gi|380784389|gb|AFE64070.1| general transcription factor IIH subunit 3 [Macaca mulatta]
gi|383417813|gb|AFH32120.1| general transcription factor IIH subunit 3 [Macaca mulatta]
gi|384946662|gb|AFI36936.1| general transcription factor IIH subunit 3 [Macaca mulatta]
Length = 308
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 103/286 (36%), Positives = 164/286 (57%), Gaps = 20/286 (6%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G P + LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSA 170
+G+ +LL+GSL+ ALCYI R+ + + RIL ++ + D QY+ MN IF+A
Sbjct: 125 KGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAA 184
Query: 171 QRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQL 230
Q+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L L
Sbjct: 185 QKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLIL 243
Query: 231 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
P PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 244 PPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|66819921|ref|XP_643618.1| general transcription factor IIH, polypeptide 3 [Dictyostelium
discoideum AX4]
gi|74861043|sp|Q86IB5.1|TF2H3_DICDI RecName: Full=General transcription factor IIH subunit 3; AltName:
Full=TFIIH basal transcription factor complex subunit 3
gi|60471553|gb|EAL69509.1| general transcription factor IIH, polypeptide 3 [Dictyostelium
discoideum AX4]
Length = 372
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 107/259 (41%), Positives = 150/259 (57%), Gaps = 16/259 (6%)
Query: 32 LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVG--------- 82
+ F++FL H + F+NA L LNQ NQ+ +I + +V+ S+
Sbjct: 90 IGFNKFLEHFMVFINAYLMLNQENQLAIICSKIGESSFVFPQSNIDQYQQEQQELEQRQL 149
Query: 83 --NGRM-PSLCATLL-QNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS 138
NG + P+ T+ Q L + D ++ + + I S S S+S+ALCYI R+ R
Sbjct: 150 NENGELLPTPNKTIQGQILAKLQKLDLEIKHDQTD--ILSSSFSASMSIALCYINRIKRE 207
Query: 139 GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITG 198
+PRIL SPD QY+++MN IFS+Q+ +P+DSC L +S FLQQAS++T
Sbjct: 208 TPT-IKPRILVFNISPDVSSQYISVMNCIFSSQKQSIPVDSCILSQSDSTFLQQASHLTS 266
Query: 199 GVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVC 258
G++ KPQ+ + L QYLLT F D SR L P VD+RASCFCHK +D+GY+CSVC
Sbjct: 267 GIYLKPQKQELLSQYLLTTFLLDTLSRKSLAYPTLKSVDYRASCFCHKRIVDIGYVCSVC 326
Query: 259 LSIYCKHLKKCSTCGSVFG 277
LSI+C H CSTCG+ F
Sbjct: 327 LSIFCGHSSSCSTCGTKFS 345
>gi|34783458|gb|AAH39726.1| GTF2H3 protein, partial [Homo sapiens]
gi|34783739|gb|AAH47868.2| GTF2H3 protein, partial [Homo sapiens]
Length = 303
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 165/285 (57%), Gaps = 20/285 (7%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGYN 65
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 1 DELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQ 60
Query: 66 SCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEPE 113
++Y + G+ G P + LL + E + ++ + + K + +
Sbjct: 61 ESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIK 120
Query: 114 GRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQ 171
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN IF+AQ
Sbjct: 121 GQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQ 180
Query: 172 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLP 231
+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L LP
Sbjct: 181 KQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILP 239
Query: 232 KPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 240 PPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 284
>gi|449279312|gb|EMC86947.1| General transcription factor IIH subunit 3, partial [Columba livia]
Length = 306
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 163/295 (55%), Gaps = 38/295 (12%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGYN 65
D++SL+VV++DTNP +W +L ++F + V+ N+ L +N+ N++ VIA+
Sbjct: 2 DELSLLVVVIDTNPIWWGKKALGEAEFTLSKCIDAVMVLGNSHLLMNRNNKLAVIASHTQ 61
Query: 66 SCDYVY------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL 107
++Y +S+ +G++ + ++ + + +++ M K E
Sbjct: 62 ESRFLYPGKRWAVADLFGDGGSSMESNCSGSRDGKYELLTAINDAIAEEIKDLMTKTEMK 121
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP------QPRILCLQGSPDGPEQYV 161
G+Q + L+GSL+ ALC I + S P + RIL ++ + D QY+
Sbjct: 122 GQQTE------TQLAGSLAKALCCILLIVESS--KPLSNQEIKSRILVIKAAEDSALQYM 173
Query: 162 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 221
MN IF+AQ+ V ID+C L + +S LQQA ITGG++ K + L QYLL +F D
Sbjct: 174 NFMNVIFAAQKQSVLIDACVLES-DSGLLQQACDITGGIYLKVLHMPSLLQYLLWVFLPD 232
Query: 222 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C CSTC + F
Sbjct: 233 QEQRSQLVLPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICSTCETAF 287
>gi|332254335|ref|XP_003276282.1| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Nomascus leucogenys]
Length = 308
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 163/292 (55%), Gaps = 32/292 (10%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106
++Y + + +G++ + S +++ +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKGDI 124
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIM 164
G+ +LL+GSL+ ALCYI R+ + + RIL ++ + D QY+ M
Sbjct: 125 KGQHTE------TLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIKAAEDSALQYMNFM 178
Query: 165 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 224
N IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 179 NVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQ 237
Query: 225 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 238 RSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 289
>gi|354491444|ref|XP_003507865.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
2 [Cricetulus griseus]
gi|344248744|gb|EGW04848.1| General transcription factor IIH subunit 3 [Cricetulus griseus]
Length = 313
Score = 174 bits (440), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 166/295 (56%), Gaps = 33/295 (11%)
Query: 8 LYSDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIAT 62
L D+++L+V+++DTNP +W +L SQF + V+ N+ L +++ NQ+ VIA+
Sbjct: 7 LAEDELNLLVIIVDTNPIWWGKQALKGSQFTLSKCMDAVMVLANSHLFMHRSNQLAVIAS 66
Query: 63 GYNSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNK 103
++Y D + +G++ + + + + +++ M K
Sbjct: 67 HIQESRFLYPGKNGRLGDFFGDPGNPFPDCNPSGSKDGKYELLTAANDVIAEEIKDLMTK 126
Query: 104 DEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYV 161
+ G+ +LL+GSL+ ALCYI R+ ++ + + RIL ++ + D QY+
Sbjct: 127 SDIKGQHTE------TLLAGSLAKALCYIHRMNKAVKDNQEMKSRILVIKAAEDSALQYM 180
Query: 162 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 221
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 181 NFMNVIFAAQKQNILIDACILDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPD 239
Query: 222 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
R+ L LP P+ VD+RA+CFCH++ I++GY+CSVCLSI+C C+TC + F
Sbjct: 240 QDQRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 294
>gi|354491442|ref|XP_003507864.1| PREDICTED: general transcription factor IIH subunit 3-like isoform
1 [Cricetulus griseus]
Length = 309
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 165/293 (56%), Gaps = 33/293 (11%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +++ NQ+ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKGSQFTLSKCMDAVMVLANSHLFMHRSNQLAVIASHI 64
Query: 65 NSCDYVY-------------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE 105
++Y D + +G++ + + + + +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPFPDCNPSGSKDGKYELLTAANDVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R+ ++ + + RIL ++ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKAVKDNQEMKSRILVIKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 179 MNVIFAAQKQNILIDACILDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD 237
Query: 224 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
R+ L LP P+ VD+RA+CFCH++ I++GY+CSVCLSI+C C+TC + F
Sbjct: 238 QRSQLILPPPIHVDYRAACFCHRSLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|348528468|ref|XP_003451739.1| PREDICTED: general transcription factor IIH subunit 3-like
[Oreochromis niloticus]
Length = 300
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 102/282 (36%), Positives = 156/282 (55%), Gaps = 19/282 (6%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W + + S+ + V+ NA + + + N++ VIA+
Sbjct: 4 EDEINLLVIVVDVNPIWWGQQAQRDPQFTLSKCMDAVMVMGNAHMAMARTNKLAVIASHC 63
Query: 65 NSCDYVY--------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
++Y D S G+G+ L A EE N + K E G
Sbjct: 64 QGSHFLYPNKSWSGGDGGGNDASSSGDGKYELLSAANNLIAEEIRNI---MSKIEVTGNS 120
Query: 117 ACSLLSGSLSMALCYIQRVFRSGLL--HPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSM 174
+LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+ MN IF+AQ+
Sbjct: 121 TDTLLAGSLAKALCYIHRLTKELEVGQEIKSRILVVKAAEDCALQYMNFMNVIFAAQKQN 180
Query: 175 VPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPV 234
+ ID+C L + +S LQQA ITGG++ K Q L QYLL +F D R+ L LP P
Sbjct: 181 ILIDACVLDS-DSGLLQQACDITGGLYLKIPQKVALAQYLLWVFLPDSEQRSQLVLPPPA 239
Query: 235 GVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 240 HVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 281
>gi|296213239|ref|XP_002753188.1| PREDICTED: general transcription factor IIH subunit 3 [Callithrix
jacchus]
Length = 309
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 163/287 (56%), Gaps = 21/287 (7%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+ +L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDEWNLLVIVVDANPIWWGKQALKESQFTLSKCMDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCA---------TLLQNLEEFMNKD--EQLGKQE 111
++Y + G+ G PS LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPSEFNPSGSKDGKYELLTSANEVIAEEIKDLMTKSD 124
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFS 169
+G+ +LL+GSL+ ALCYI R+ + + RIL ++ + D QY+ MN IF+
Sbjct: 125 IKGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIKAAEDSALQYMNFMNVIFA 184
Query: 170 AQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQ 229
AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L
Sbjct: 185 AQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWMFLPDQDQRSQLI 243
Query: 230 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 244 LPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 290
>gi|355693898|gb|AER99489.1| proteinral transcription factor IIH, polypeptide 3, 34kDa [Mustela
putorius furo]
Length = 286
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 162/289 (56%), Gaps = 33/289 (11%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSS---------TGNQSV-------GNGRMPSLCA---TLLQNLEEFMNKDE 105
++Y + GN S +G+ A + + +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPSSEFSPSGSKDGKYELFTAANEVIAEEIKDLMTKSD 124
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAI 163
G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D QY+
Sbjct: 125 IKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNF 178
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 179 MNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQD 237
Query: 224 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTC 272
R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC
Sbjct: 238 QRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTC 286
>gi|410922922|ref|XP_003974931.1| PREDICTED: general transcription factor IIH subunit 3-like
[Takifugu rubripes]
Length = 298
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 156/281 (55%), Gaps = 19/281 (6%)
Query: 11 DDVSLVVVLLDTNPFFWS-----SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
D++SL+V+++D NP +W S + S+ L V+ N+ + + + N++ VIA+
Sbjct: 5 DEISLLVIVVDVNPIWWGQQAQRESEFTLSKCLDSVMVLGNSHMAMARTNKLAVIASHCQ 64
Query: 66 SCDYVYDSS-----STGNQSV---GNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
++Y S+ G ++ G+G+ L EE N + K E G
Sbjct: 65 DSHFLYPSNKLQGGENGEENTSCSGDGKYELLSIANNSIAEEMRNL---MLKTEVRGNSN 121
Query: 118 CSLLSGSLSMALCYIQRVFRSGLL--HPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
+LL+GSL+ ALCYI RV + + + RIL ++ + D QY+ MN IF+AQ+ +
Sbjct: 122 DTLLAGSLAKALCYINRVSKEMEVGQETKSRILVIKAAEDCALQYMNFMNVIFAAQKQNI 181
Query: 176 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 235
ID+C L +S LQQA ITGG++ K Q L QYLL +F D R+ L LP
Sbjct: 182 LIDACVLD-MDSGLLQQACDITGGLYLKIPQKAALAQYLLWVFLPDTEQRSQLLLPPRAH 240
Query: 236 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 241 VDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 281
>gi|403163144|ref|XP_003323260.2| hypothetical protein PGTG_04797 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163932|gb|EFP78841.2| hypothetical protein PGTG_04797 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 322
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 148/293 (50%), Gaps = 34/293 (11%)
Query: 10 SDDVSLVVVLLDTNPFFWS--------SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
+D L+ V+LD NP W+ + S + L F N+ L L N + V
Sbjct: 6 NDPADLLTVILDLNPLAWADLESGESQEETTSLVSVIESFLIFANSHLALRHENAIAVYG 65
Query: 62 TGYNSCDYVYDS------SSTGNQSVGNGRMPSL---------CATLLQNLEEFMNKDEQ 106
S + +Y S ++ +Q G+ + A+ ++ L
Sbjct: 66 ASLGSSELLYSSLQAKPITTKSSQPSGSRDANTYQSFRILNDSIASGVKQLATLTQSSSM 125
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ---PRILCLQGSPDGPEQYVAI 163
GKQ + +L+ ALC+I R+ R + RIL L S D P QY+ +
Sbjct: 126 TGKQPG--------IVKALAKALCHINRLARENENKKESLKARILILSVSSDAPGQYIPM 177
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
MN IFSAQ+S +PID C + +N+ FLQQA+++T G++++ ++ + QYL IF L
Sbjct: 178 MNCIFSAQKSTIPIDVCKISKENAVFLQQAAHLTEGIYYQIEKPKAILQYLTMIFLPGLA 237
Query: 224 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+R FL LPK VDFRA+CFCH+ ID+GY+CSVCLSI+C CSTC + F
Sbjct: 238 ARKFLNLPKHQEVDFRAACFCHREIIDVGYVCSVCLSIFCTPTPVCSTCRTKF 290
>gi|307105142|gb|EFN53393.1| hypothetical protein CHLNCDRAFT_13819, partial [Chlorella
variabilis]
Length = 135
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/134 (58%), Positives = 101/134 (75%), Gaps = 1/134 (0%)
Query: 144 QP-RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHH 202
QP R+LCL +PD P QY+++MNAIFSAQRS V ID+C LG ++S FLQQA+Y+TGGV+
Sbjct: 2 QPARVLCLTAAPDVPSQYISVMNAIFSAQRSGVLIDACQLGRRHSTFLQQAAYLTGGVYL 61
Query: 203 KPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIY 262
KP + L QYL ++F D +R FL++P VDFRASCFCHK ID+GY+CS CLSI+
Sbjct: 62 KPSKPVALVQYLNSVFAVDAATRQFLRMPGTAHVDFRASCFCHKRQIDLGYVCSACLSIF 121
Query: 263 CKHLKKCSTCGSVF 276
C+ L C+TCG+ F
Sbjct: 122 CEQLPACTTCGTEF 135
>gi|170093117|ref|XP_001877780.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647639|gb|EDR11883.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 360
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 160/290 (55%), Gaps = 31/290 (10%)
Query: 12 DVSLVVVLLDTNPFFWSSS-------SLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
D S + V+LD +P W S LS + FL+HVLAFLNA L N + V
Sbjct: 11 DASHLSVVLDLSPTQWHLSGLLSNKYPLSLNSFLSHVLAFLNAHLASQHENTLAVFGAFP 70
Query: 65 NSCDYVYDSS--STGNQSV-GNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
+Y S+ + QS+ N P + +T++ + + ++ +Q ++ P C+
Sbjct: 71 GKSLMLYSSTLHNPELQSIDSNSYAPFKLVDSTIINRISDELDAIDQSEEEAP-----CA 125
Query: 120 LLSGSLSMALCYIQRV-------------FRSGLLHPQPRILCLQGSPDGPEQYVAIMNA 166
L+ G+L+ ALCY+ R+ R + P PRIL L SPD Y+ IMN+
Sbjct: 126 LV-GALTKALCYVNRISLPPPSNSSTSPNTRDSTVLPDPRILILSVSPDLSTSYIPIMNS 184
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 226
IFSAQ+ V ID+C + ++ FLQQA+++TGG + ++ D L QYL+ F + R
Sbjct: 185 IFSAQKLKVTIDACQVYGPDAVFLQQAAHLTGGSYLFLERRDALLQYLIMSFLSAPSIRQ 244
Query: 227 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
L +P +DFRA+CFCHKN ID+G++CSVCLSI+C+ + CSTC + F
Sbjct: 245 VLAVPTQDRIDFRAACFCHKNIIDIGFVCSVCLSIFCQPVPVCSTCRTKF 294
>gi|345564048|gb|EGX47029.1| hypothetical protein AOL_s00097g75 [Arthrobotrys oligospora ATCC
24927]
Length = 374
Score = 171 bits (432), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 113/322 (35%), Positives = 161/322 (50%), Gaps = 64/322 (19%)
Query: 7 KLYSDDVSLVVVLLDTNPFFWS----SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
K +D +L V++LDTNP W+ SSSLSF L+ +L F NA L +Q N+ VIA
Sbjct: 13 KAPADLATLQVIILDTNPLAWATFEKSSSLSFPAALSQLLIFANAHLAFSQSNRCAVIAN 72
Query: 63 GYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ---------------- 106
+ ++ + + R P ++L+E N++
Sbjct: 73 HIDGVHFLSPADPGTDH-----RDPGEADLTPEDLKEIANQNASKYRVFRLLEDEVRASY 127
Query: 107 ---LGKQEPEGRIAC---SLLSGSLSMALCYIQRVFRSGL-------------------- 140
+ PE +AC S L+G+LS AL YI R+ G
Sbjct: 128 RRLIKNTTPEAVMACPNSSYLAGALSAALTYINRICFGGTGGRSSGVPGDEKSKVNSAGG 187
Query: 141 --------LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQ 192
+H +IL + +PD QY+ +MN+IF+AQR VPID C L ++ FLQQ
Sbjct: 188 KVDETGRTMHA--KILVVSVTPDPANQYIPVMNSIFAAQRLKVPIDVCKL-RDSTVFLQQ 244
Query: 193 ASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMG 252
A+ TGGV+ +P+ GL QYL+ F D +R L LP V VDFRA+CFCHK +D+G
Sbjct: 245 AADATGGVYMEPEHPQGLIQYLMMGFLPDHLARQSLILPTKVDVDFRAACFCHKKVLDIG 304
Query: 253 YICSVCLSIYCKHLKK--CSTC 272
++CSVCLSI+C+ + CSTC
Sbjct: 305 FVCSVCLSIFCEPPQGAVCSTC 326
>gi|432095027|gb|ELK26416.1| General transcription factor IIH subunit 3, partial [Myotis
davidii]
Length = 277
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 103/288 (35%), Positives = 162/288 (56%), Gaps = 41/288 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNRLAVIASHI 64
Query: 65 NSCDYVY---------------DSSSTGNQS-VGNGRMPSLCA---TLLQNLEEFMNKDE 105
++Y + +S N S +G+ L A +++ +++ M K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPASEYNPSGSKDGKYELLTAANEVIVEEIKDLMTKSD 124
Query: 106 QLGKQ-EPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIM 164
G+ EP LL+GSL+ ALCY Q + + RIL ++ + D QY+ M
Sbjct: 125 IKGQHTEP-------LLAGSLAKALCYNQEM--------KSRILVIKAAEDSALQYMNFM 169
Query: 165 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 224
N IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D
Sbjct: 170 NVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQ 228
Query: 225 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTC 272
R+ L LP P+ VD+RA+C CH+N I++GY+CSVCLSI+C C+TC
Sbjct: 229 RSQLTLPPPIHVDYRAACLCHRNLIEIGYVCSVCLSIFCNFSPICTTC 276
>gi|47226419|emb|CAG08435.1| unnamed protein product [Tetraodon nigroviridis]
Length = 299
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 158/286 (55%), Gaps = 26/286 (9%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
D++SL+V+++D NP +W + + S+ L ++ N+ + + + N++ VIA+
Sbjct: 4 EDEISLLVIVVDVNPIWWGQQAQRQPEFTLSKCLDAMMVLGNSHMAMARTNKLAVIASHC 63
Query: 65 NSCDYVYDSSS----TGN-----QSVGNGRMPSLCAT---LLQNLEEFMNKDEQLGKQEP 112
++Y S+ GN S G+G+ L +++ + M K E G
Sbjct: 64 QDSHFLYPSNKLQVGDGNGDENTSSSGDGKYELLSVANNLIVEEIRSVMLKTEVRGNSND 123
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRSGLL--HPQPRILCLQGSPDGPEQYVAIMNAIFSA 170
+LL+GSL+ ALCYI RV + + + RIL ++ + D QY+ MN IF+A
Sbjct: 124 ------TLLAGSLAKALCYINRVSKELEVGQETKSRILVIKAAEDSALQYMNFMNVIFAA 177
Query: 171 QRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQL 230
Q+ + ID+C L + +S LQQA ITGG++ K Q L QYLL +F D R+ L L
Sbjct: 178 QKQNILIDACVLDS-DSGLLQQACDITGGLYLKIPQKLALAQYLLWVFLPDTEQRSQLLL 236
Query: 231 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
P VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 237 PPRAHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 282
>gi|307214269|gb|EFN89365.1| General transcription factor IIH subunit 3 [Harpegnathos saltator]
Length = 292
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 153/277 (55%), Gaps = 23/277 (8%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL+V++LD NP + SQ L + F NA L + N++ V+A +S +
Sbjct: 6 NTSLLVIVLDVNPVQRIVKQETKILSQCLDSAIVFANAHLMQSSNNELAVMACHGHSAKF 65
Query: 70 VYDSSSTGNQSVGNG---RMPSLCATLLQNLEEFMNK---DEQLGKQEPEGRIACSLLSG 123
+Y + +G R + T+ L++ +N+ D L + SL+SG
Sbjct: 66 LYPCENAAEIRQIDGQYERFTMVERTVRLQLQKVINELSTDTPLNTE--------SLISG 117
Query: 124 SLSMALCYIQRVFRSGL----LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
+LSMALCYI R+ R + LHP RIL + S D QY+ MN F+AQ+ V +D
Sbjct: 118 ALSMALCYIARLERDKVAGQKLHP--RILVITASNDSATQYMNYMNIFFTAQKMNVILDV 175
Query: 180 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 239
C L Q LQQ ITGG + K QL GL QYLL +F D + R+ L LP PV VD+R
Sbjct: 176 CSLD-QELTLLQQGCDITGGNYLKVPQLAGLLQYLLWVFLPDPNVRSKLVLPPPVKVDYR 234
Query: 240 ASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
A+CFCH+ ID+GY+CS+CLS++CK C+TC +VF
Sbjct: 235 AACFCHQELIDIGYVCSICLSVFCKFSPICTTCHTVF 271
>gi|442749163|gb|JAA66741.1| Putative rna polymer [Ixodes ricinus]
Length = 293
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 152/276 (55%), Gaps = 18/276 (6%)
Query: 11 DDVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D+ SL+V ++DTNP S S+ L + F N+ L LN N++ +IA+ +
Sbjct: 5 DEGSLLVAIIDTNPCASLLESDQGIVSKLLDALTVFCNSHLMLNPCNKLAIIASHSHRST 64
Query: 69 YVY---DSSSTGNQSVGNGR---MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLS 122
++Y SS+ SV +G+ + + ++E + D+ E SLL+
Sbjct: 65 FIYPKPQESSSDTYSV-DGQYELFTEVTGAIKDGVKELVLSDDS------ESAAGESLLT 117
Query: 123 GSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
G LS+ALCYI R+ + + RIL L S + QY+ MN F+AQ+ V ID+C
Sbjct: 118 GGLSLALCYINRIEKESSSQNKIASRILVLSASGESASQYLNFMNVFFTAQKKNVIIDAC 177
Query: 181 YLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRA 240
L ++S LQQ ITGG + K GL QYLL +F D SRN++ P PV VD+RA
Sbjct: 178 VL-EKDSGLLQQGCDITGGKYMKVPNHAGLLQYLLWVFLPDKTSRNYMVFPPPVHVDYRA 236
Query: 241 SCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+CFCH+N I++GY+CSVCLSI+C CSTC + F
Sbjct: 237 ACFCHRNLIEIGYVCSVCLSIFCAFSPICSTCQTAF 272
>gi|158296528|ref|XP_316918.4| AGAP008522-PA [Anopheles gambiae str. PEST]
gi|157014753|gb|EAA12181.5| AGAP008522-PA [Anopheles gambiae str. PEST]
Length = 288
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 152/275 (55%), Gaps = 15/275 (5%)
Query: 10 SDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+ D SL+V++LDTNP + +Q L ++AF NA L N++ V+A +++
Sbjct: 4 NKDASLLVIVLDTNPSQRIIREKPHNLTQCLDSIVAFANAHLMQKAQNKLAVLACHHHAT 63
Query: 68 DYVYDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
++Y + Q G + +L T+ Q L +N L SLL+G
Sbjct: 64 QFLYPTPGKPLDIRQVDGQYEVFTLVEKTIKQKLAHMINTAPPLTTPTE------SLLAG 117
Query: 124 SLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
S+SMALCYI R+ R+ + R+L + GS + QY+ MN F+AQ+ V +D C
Sbjct: 118 SMSMALCYIARINRNKAPGSKINSRVLVVTGSNECASQYMTYMNVFFTAQKQGVVVDVCA 177
Query: 182 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 241
L S LQQ ITGG + + +QL+G QYLL +F D R L LP PV VD+RA+
Sbjct: 178 LDKALS-LLQQGCDITGGQYLRLEQLEGFLQYLLWVFLPDPQMRCKLVLPPPVKVDYRAA 236
Query: 242 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
CFCH+ ID+GY+CSVCLSI+CK C+TC +VF
Sbjct: 237 CFCHRELIDIGYVCSVCLSIFCKFSPICTTCHTVF 271
>gi|157132766|ref|XP_001662634.1| transcription factor TFIIH-subunit, putative [Aedes aegypti]
gi|108871079|gb|EAT35304.1| AAEL012523-PA [Aedes aegypti]
Length = 288
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 155/275 (56%), Gaps = 15/275 (5%)
Query: 10 SDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+ D SL+V+++DTNP + +Q L ++AF NA L N++ V+A +++
Sbjct: 4 NKDASLLVIVMDTNPSQRIIRENPHHLTQCLDSIVAFANAHLMQKAQNKLAVLACHHHAT 63
Query: 68 DYVYDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
+++Y + Q G +L T+ Q L + +++ +L SLL+G
Sbjct: 64 EFLYPTPGKPLDIRQVDGQYEAFTLVEKTIKQKLAKVISEAPRLTVPTE------SLLAG 117
Query: 124 SLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
S++MALCYI RV R+ + RIL + GS + QY+ MN F+AQ+ V +D C
Sbjct: 118 SMAMALCYIARVHRNKPAGVKINSRILVVTGSNECASQYMTYMNVFFTAQKQNVSLDVCA 177
Query: 182 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 241
L S LQQ ITGG + K QLDG QYLL +F + +R L LP PV VD+RA+
Sbjct: 178 LDKPLS-LLQQGCDITGGQYLKLPQLDGFLQYLLWVFLPEPLTRCKLVLPPPVKVDYRAA 236
Query: 242 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
CFCH+ ID+GY+CSVCLSI+CK C+TC +VF
Sbjct: 237 CFCHRELIDIGYVCSVCLSIFCKFSPICTTCHTVF 271
>gi|189189624|ref|XP_001931151.1| RNA polymerase II transcription factor B subunit 4 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187972757|gb|EDU40256.1| RNA polymerase II transcription factor B subunit 4 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 370
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 107/330 (32%), Positives = 166/330 (50%), Gaps = 60/330 (18%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SS+LS S L ++L F+NA L N+V VIA+ + ++Y
Sbjct: 20 SLLAIVLDTNPHAWAHLSSTLSLSAALANILVFINAHLASGNANEVAVIASHSHKTAFLY 79
Query: 72 DSSST-------GNQSVGNGRMPSLC-------------ATLLQNLEEFMNKDEQLGKQE 111
+ S+ G N ++ + + +L+N + +N+ ++ +
Sbjct: 80 PTPSSPQPQSRHGTNGATNDKVHDMAESANKYRPFAVVESAILRNFVKLLNETKESHLEA 139
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRSGLLHP---------------------------Q 144
+L+ G+LS+AL +I + +LH
Sbjct: 140 ----TPTTLIGGALSLALTHINK---QTILHAPTAASAESTALSALADSENAHVDRVPLT 192
Query: 145 PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKP 204
RIL + S D QY+ +MN+IF+AQR +PID L A ++ LQQAS TGGV+ KP
Sbjct: 193 SRILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKL-AGDTVLLQQASDATGGVYMKP 251
Query: 205 QQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK 264
+ +GL QYL+ F D+ +R L +P GVDFRA+CFCH+ +D+G++CSVCLSI+C
Sbjct: 252 DRPEGLLQYLMMAFLPDVTARTSLVVPSAGGVDFRAACFCHRKVVDIGFVCSVCLSIFCN 311
Query: 265 ---HLKKCSTCGSVFGQAQTQSDEPSATNR 291
C TCGS ++ P+ R
Sbjct: 312 PDLSDNLCMTCGSYLSLRSAVTNPPALIPR 341
>gi|194853925|ref|XP_001968252.1| GG24611 [Drosophila erecta]
gi|190660119|gb|EDV57311.1| GG24611 [Drosophila erecta]
Length = 299
Score = 167 bits (422), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 155/284 (54%), Gaps = 21/284 (7%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A SK + L+V++LDTNP + + +Q L V+AF NA L N++ V++
Sbjct: 6 AASKEAESCIDLLVIVLDTNPSQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVS 65
Query: 62 TGYNSCDYVY---DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGR 115
+++ +++Y Q G SL ++ +QLG P
Sbjct: 66 CSHHATNFLYPLPRRQVELRQVDGQYEAFSLVEKTVK---------QQLGSILMNAPRLS 116
Query: 116 IAC-SLLSGSLSMALCYIQRVFRSGL--LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
C SLL+GS+SMALCYI R+ R+ + RIL L GS + QY+ MN F+AQ+
Sbjct: 117 APCESLLAGSMSMALCYISRLQRNVAPGVKMHSRILVLTGSNECASQYMTFMNVFFTAQK 176
Query: 173 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 232
+ ID+C L + + LQQ IT G K QLDGL QYLL +F H R+ L LP
Sbjct: 177 LGITIDTCALN-KTLSLLQQGCDITSGQFLKVTQLDGLLQYLLWVFLPAPHIRHKLVLPP 235
Query: 233 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
P VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 236 PPKVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 279
>gi|389741855|gb|EIM83043.1| Tfb4-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 400
Score = 166 bits (421), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 102/296 (34%), Positives = 150/296 (50%), Gaps = 40/296 (13%)
Query: 11 DDVSLVVVLLDTNPFFW-------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D S + +++D +P W ++ L FL+HVL F+N+ + N + V
Sbjct: 2 DKASHLSLIIDLSPSQWLLSADPSNAHPLPLHVFLSHVLTFINSHIASKHENSLAVFGAL 61
Query: 64 -------YNSCDYVYDSSSTGNQSVGNGRMP------SLCATLLQNLE--EFMNKDEQLG 108
Y+S D + D T ++S N P ++ + + LE E NK E+
Sbjct: 62 PGKSVMLYSSSDSIPDQDQTADESSANSYRPFRLVDSAIVRRITEELELLEAQNKPEE-- 119
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRVF--------RSGLLHPQPRILCLQGSPDGPEQY 160
EP L G+L+ ALCYI R+ H PRIL L SPD Y
Sbjct: 120 --EPVA------LVGALTKALCYINRITHVPTANAPEDPAAHVDPRILILSVSPDLSTAY 171
Query: 161 VAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGT 220
+ +MN+IFSAQ+ V ID C + ++ FLQQ +++T G + ++ D L QYL+ F
Sbjct: 172 IPVMNSIFSAQKLKVTIDVCKVYGPDTVFLQQTAHLTAGSYIYLERRDALLQYLIMSFLP 231
Query: 221 DLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
R L +PK +DFRA+CFCHKN +D+G++CSVCLSI+C + CSTC + F
Sbjct: 232 PPALRQILAVPKQDKIDFRAACFCHKNIVDIGFVCSVCLSIFCAPVPVCSTCRTKF 287
>gi|195575703|ref|XP_002077716.1| GD22925 [Drosophila simulans]
gi|194189725|gb|EDX03301.1| GD22925 [Drosophila simulans]
Length = 299
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 112/281 (39%), Positives = 157/281 (55%), Gaps = 19/281 (6%)
Query: 6 SKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
SK + L+V++LDTNP F + + +Q L V+AF NA L N++ V++
Sbjct: 8 SKEAESCIDLLVIVLDTNPSQHFVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVSCS 67
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGRIAC-S 119
+++ +++Y + V +M NL E K +QLG P C S
Sbjct: 68 HHATNFLY---PLPRRQVELRQMDGQYEAF--NLVEKTVK-QQLGSILMNAPRLSAPCES 121
Query: 120 LLSGSLSMALCYIQRVFRSGLLHP----QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
LL+GS+SMALCYI R+ R+ L P RIL L GS + QY+ MN F+AQ+ +
Sbjct: 122 LLAGSMSMALCYISRLQRN--LAPGVKMHSRILVLTGSNECASQYMTFMNVFFTAQKLGI 179
Query: 176 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 235
ID+C L + + LQQ IT G K QLDGL QYLL +F R+ L LP P
Sbjct: 180 TIDTCALD-KTLSLLQQGCDITSGQFLKVTQLDGLLQYLLWVFLPAPQIRHKLVLPPPPK 238
Query: 236 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 239 VDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 279
>gi|24580793|ref|NP_608574.2| Tfb4 [Drosophila melanogaster]
gi|22945518|gb|AAF51411.2| Tfb4 [Drosophila melanogaster]
gi|94400646|gb|ABF17925.1| FI01003p [Drosophila melanogaster]
Length = 299
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 159/284 (55%), Gaps = 21/284 (7%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A SK + L+V++LDTNP F + + +Q L V+AF NA L N++ V++
Sbjct: 6 AASKEAESCIDLLVIVLDTNPSQHFVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVS 65
Query: 62 TGYNSCDYVYDSSSTGNQ-SVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGRIA 117
+++ +++Y + +G+ + NL E K +QLG P
Sbjct: 66 CSHHATNFLYPLPRRQVELRQVDGQYEAF------NLVEKTVK-QQLGSILMNAPRLSAP 118
Query: 118 C-SLLSGSLSMALCYIQRVFRSGLLHP----QPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
C SLL+GS+SMALCYI R+ R+ L P RIL + GS + QY+ MN F+AQ+
Sbjct: 119 CESLLAGSMSMALCYISRLQRN--LAPGVKMHSRILVVTGSNECASQYMTFMNVFFTAQK 176
Query: 173 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 232
+ ID+C L + + LQQ IT G K QLDGL QYLL +F R+ L LP
Sbjct: 177 LGITIDTCALD-KTLSLLQQGCDITSGQFLKVTQLDGLLQYLLWVFLPAPQIRHKLVLPP 235
Query: 233 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
P VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 236 PPKVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 279
>gi|451848115|gb|EMD61421.1| hypothetical protein COCSADRAFT_173760 [Cochliobolus sativus
ND90Pr]
Length = 377
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/337 (32%), Positives = 167/337 (49%), Gaps = 67/337 (19%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SS+LS S L ++L F+NA L N+V VIA+ + ++Y
Sbjct: 20 SLLAIVLDTNPHAWAHLSSTLSLSTALANILVFINAHLASGNTNEVAVIASHSHKTTFLY 79
Query: 72 DSS----STGNQSVGNGRM-----------------------PSLCATLLQNLEEFMNKD 104
S + + NG + + +T+LQN + +N+
Sbjct: 80 PSPVAPQAQSRNGIANGDVEMNGIGDDKGQHTAESANKYRPFAVVESTILQNFVKLLNET 139
Query: 105 EQLGKQEPEGRIACSLLSGSLSMALCYIQR---------------------------VFR 137
++ + +L+ G+LS+AL +I + V R
Sbjct: 140 KESHLEA----TPTTLIGGALSLALTHINKQTILHAPTAASAESASLAALADSENTHVDR 195
Query: 138 SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYIT 197
L RIL + S D QY+ +MN+IF+AQR +PID L A ++ LQQAS T
Sbjct: 196 VSLTS---RILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKL-AGDTVLLQQASDAT 251
Query: 198 GGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSV 257
GGV+ KP++ +GL QYL+ F D+ +R L +P GVDFRA+CFCH+ +D+G++CSV
Sbjct: 252 GGVYMKPERPEGLLQYLMMAFLPDVTARASLVVPSAGGVDFRAACFCHRKVVDIGFVCSV 311
Query: 258 CLSIYCK---HLKKCSTCGSVFGQAQTQSDEPSATNR 291
CLSI+C C TCGS ++ P+ R
Sbjct: 312 CLSIFCSPDLPDNLCLTCGSYLSLRSAMTNPPALIPR 348
>gi|350407575|ref|XP_003488130.1| PREDICTED: general transcription factor IIH subunit 3-like [Bombus
impatiens]
Length = 292
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 104/275 (37%), Positives = 151/275 (54%), Gaps = 19/275 (6%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL++V+LD NP + +Q L + F NA L + NQ+ VIA + +
Sbjct: 6 ETSLLIVVLDVNPVQRIIKQETRILTQCLDSTVVFANAHLMQSSNNQLAVIACHSHGAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNK---DEQLGKQEPEGRIACSLLSG 123
+Y +G+ T+ Q L++ +N+ D+ L + SL+SG
Sbjct: 66 LYPCEKPLEIRQIDGQYEKFTMIERTIRQQLQQVINEISMDKPLNGE--------SLISG 117
Query: 124 SLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
+L+MALCY+ R+ R + + RIL + S D QY+ MN F+AQ+ + +D C
Sbjct: 118 ALTMALCYVARLEREKVASEKIYSRILVITASNDSATQYMNYMNIFFTAQKMGIILDVCS 177
Query: 182 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 241
L Q LQQ ITGG + K QL+GL QYLL IF D + R+ L LP PV VD+RA+
Sbjct: 178 LD-QELTLLQQGCDITGGNYLKVPQLNGLLQYLLWIFLPDPNVRSKLVLPPPVKVDYRAA 236
Query: 242 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
CFCH+ ID+GY+CS+CLSI+CK C+TC +VF
Sbjct: 237 CFCHQELIDIGYVCSICLSIFCKFSPICTTCHTVF 271
>gi|451999247|gb|EMD91710.1| hypothetical protein COCHEDRAFT_1136566 [Cochliobolus
heterostrophus C5]
Length = 377
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/337 (33%), Positives = 168/337 (49%), Gaps = 67/337 (19%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SS+LS S L ++L F+NA L N+V VIA+ + ++Y
Sbjct: 20 SLLAIVLDTNPHAWAHLSSTLSLSTALANILVFINAHLASGNTNEVAVIASHSHKTTFLY 79
Query: 72 DS---------SSTGNQSV----------------GNGRMP--SLCATLLQNLEEFMNKD 104
S + T N V N P + +T+LQN + +N+
Sbjct: 80 PSPVAPQTQARNGTANGDVEMNGTGGDKGQHTAESANKYRPFAVVESTILQNFVKLLNET 139
Query: 105 EQLGKQEPEGRIACSLLSGSLSMALCYIQR---------------------------VFR 137
++ + +L+ G+LS+AL +I + V R
Sbjct: 140 KESHLEA----TPTTLIGGALSLALTHINKQTILHAPTAASAESASLAALADSENTHVDR 195
Query: 138 SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYIT 197
L RIL + S D QY+ +MN+IF+AQR +PID L A ++ LQQAS T
Sbjct: 196 VSLTS---RILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKL-AGDTVLLQQASDAT 251
Query: 198 GGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSV 257
GGV+ KP++ +GL QYL+ F D+ +R L +P GVDFRA+CFCH+ +D+G++CSV
Sbjct: 252 GGVYMKPERPEGLLQYLMMAFLPDVTARASLVVPSAGGVDFRAACFCHRKVVDIGFVCSV 311
Query: 258 CLSIYCK---HLKKCSTCGSVFGQAQTQSDEPSATNR 291
CLSI+C C TCGS ++ P+ R
Sbjct: 312 CLSIFCSPDLPGNLCLTCGSYLSLRSAMTNPPALIPR 348
>gi|307175391|gb|EFN65408.1| General transcription factor IIH subunit 3 [Camponotus floridanus]
Length = 292
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 150/272 (55%), Gaps = 13/272 (4%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
D SL+V++LD NP + SQ L + F NA L + N++ ++A +S +
Sbjct: 6 DTSLLVIVLDINPVQRIVKQETKILSQCLDSTVVFANAHLMQSSNNELAIMACHGHSAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+Y + +G+ T+ Q L++ +N+ E SL+SG+LS
Sbjct: 66 LYPCENMAEIRQIDGQYEKFTMVERTVRQQLQQVINEISMNTPLNTE-----SLISGALS 120
Query: 127 MALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 184
MALCYI R+ R + + R+L + S D QY+ MN F+AQR V +D C L
Sbjct: 121 MALCYIARLEREKFANQKLHSRMLVITASNDSAMQYMNYMNIFFTAQRMNVILDVCSLD- 179
Query: 185 QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFC 244
Q LQQ ITGG + + QL GL QYLL +F D R+ L LP PV V++RA+CFC
Sbjct: 180 QELTLLQQGCEITGGNYLQVPQLAGLLQYLLWVFLPDPSVRSKLVLPPPVKVNYRAACFC 239
Query: 245 HKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
H++ ID+GY+CS+CLSI+CK+ C+TC +VF
Sbjct: 240 HQDLIDIGYVCSICLSIFCKYSPICTTCHTVF 271
>gi|170028289|ref|XP_001842028.1| TFIIH basal transcription factor complex p34 subunit [Culex
quinquefasciatus]
gi|167874183|gb|EDS37566.1| TFIIH basal transcription factor complex p34 subunit [Culex
quinquefasciatus]
Length = 292
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/279 (38%), Positives = 155/279 (55%), Gaps = 19/279 (6%)
Query: 10 SDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
++D SL+V++LDTNP + +Q L ++ F NA L N++ V+A +++
Sbjct: 4 NNDTSLLVIVLDTNPSQRIIRENPHHLTQCLDSIVGFANAHLMQKAHNKLAVLACHHHAT 63
Query: 68 DYVYDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
+++Y + Q G +L T+ Q L +N+ +L SLL+G
Sbjct: 64 EFLYPNPGKPLDIRQVDGQYEQFTLVEKTIKQKLARMINEAPRLAAPTE------SLLAG 117
Query: 124 SLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
S++MALCYI R+ R+ + RIL + GS + QY+ MN F+AQ+ V +D C
Sbjct: 118 SMAMALCYIARINRNKPAGVKINSRILVVTGSNECASQYMTYMNVFFTAQKQNVTLDVCA 177
Query: 182 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD--LHS--RNFLQLPKPVGVD 237
L S LQQ ITGG + K QLDG QYLL +F D +H R L LP PV VD
Sbjct: 178 LDKPLS-LLQQGCDITGGQYLKLPQLDGFLQYLLWVFLPDPQMHPQMRCKLVLPPPVKVD 236
Query: 238 FRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+RA+CFCH+ ID+GY+CSVCLSI+CK C+TC +VF
Sbjct: 237 YRAACFCHRELIDIGYVCSVCLSIFCKFSPICTTCHTVF 275
>gi|195350283|ref|XP_002041670.1| GM16625 [Drosophila sechellia]
gi|194123443|gb|EDW45486.1| GM16625 [Drosophila sechellia]
Length = 299
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 155/274 (56%), Gaps = 19/274 (6%)
Query: 13 VSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
+ L+V++LDTNP F + + +Q L V+AF NA L N++ V++ +++ +++
Sbjct: 15 IDLLVIVLDTNPSQHFVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVSCSHHATNFL 74
Query: 71 YDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGRIAC-SLLSGSLS 126
Y + V +M NL E K +QLG P C SLL+GS+S
Sbjct: 75 Y---PLPRRQVELRQMDGQYEAF--NLVEKTVK-QQLGSILMNAPRLSAPCESLLAGSMS 128
Query: 127 MALCYIQRVFRSGLLHP----QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL 182
MALCYI R+ R+ L P RIL L GS + QY+ MN F+AQ+ + ID+C L
Sbjct: 129 MALCYISRLQRN--LAPGVKMHSRILVLTGSNECASQYMTFMNVFFTAQKLGITIDTCAL 186
Query: 183 GAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASC 242
+ + LQQ IT G K QLDGL QYLL +F R+ L LP P VD+RASC
Sbjct: 187 D-KTLSLLQQGCDITSGQFLKVTQLDGLLQYLLWVFLPAPQIRHKLVLPPPPKVDYRASC 245
Query: 243 FCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
FCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 246 FCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 279
>gi|322795304|gb|EFZ18109.1| hypothetical protein SINV_08150 [Solenopsis invicta]
Length = 322
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 152/284 (53%), Gaps = 18/284 (6%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL+V++ D NP + SQ L + F NA L + N++ ++A +S +
Sbjct: 4 ETSLLVIVFDVNPMQRIVKQETKILSQCLDSTIVFANAHLMQSSNNELAIMACHSHSARF 63
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+Y + +G+ T+ Q L++F+N+ E SL+SG+LS
Sbjct: 64 LYPCENAVEIRQMDGQYEKFTMVERTVRQQLQQFINEIPMDAPLNTE-----SLISGALS 118
Query: 127 MALCYIQRVFRSGL----LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL 182
MALCYI R+ R + LHP RIL + S D QY+ MN F+AQR V +D C L
Sbjct: 119 MALCYIARLEREKVAGQKLHP--RILVITASNDSATQYMNYMNIFFTAQRMNVILDVCSL 176
Query: 183 GAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASC 242
Q LQQ I+GG + K QL GL QYLL +F D R L LP PV VD+RA+C
Sbjct: 177 D-QELTLLQQGCDISGGNYLKVPQLAGLLQYLLWVFLPDPSVRLKLVLPPPVKVDYRAAC 235
Query: 243 FCHKNTIDMGYICSVCLSIYCKHLKKCSTCG-SVFGQAQTQSDE 285
FCH+ ID+GY+CS+CLSI+CK C+TC A+T +D+
Sbjct: 236 FCHQELIDIGYVCSICLSIFCKFSPICTTCQYHCIQNARTYADK 279
>gi|330933521|ref|XP_003304199.1| hypothetical protein PTT_16692 [Pyrenophora teres f. teres 0-1]
gi|311319344|gb|EFQ87711.1| hypothetical protein PTT_16692 [Pyrenophora teres f. teres 0-1]
Length = 376
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 108/336 (32%), Positives = 165/336 (49%), Gaps = 66/336 (19%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SS+LS S L ++L F+NA L N+V VIA+ + ++Y
Sbjct: 20 SLLAIVLDTNPHAWAHLSSTLSLSAALANILVFINAHLASGNANEVAVIASHSHKTTFLY 79
Query: 72 DS-------------SSTGNQSVGNGRMPSLC-------------ATLLQNLEEFMNKDE 105
+ STG N + ++ + +L+N + +N+ +
Sbjct: 80 PTPLSPQPQSRHGTNDSTGTNGATNDKEHAMAESANKYRPFAVVESAILRNFVKLLNETK 139
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP---------------------- 143
+ + +L+ G+LS+AL +I + +LH
Sbjct: 140 ESHLEA----TPTTLIGGALSLALTHINK---QTILHAPTAASAESTALSALADSENTHV 192
Query: 144 -----QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITG 198
RIL + S D QY+ +MN+IF+AQR +PID L A ++ LQQAS TG
Sbjct: 193 DRVPLTSRILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKL-AGDTVLLQQASDATG 251
Query: 199 GVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVC 258
GV+ KP + +GL QYL+ F D +R L +P GVDFRA+CFCH+ +D+G++CSVC
Sbjct: 252 GVYMKPDRPEGLLQYLMMAFLPDATARTSLVVPSAGGVDFRAACFCHRKVVDIGFVCSVC 311
Query: 259 LSIYCK---HLKKCSTCGSVFGQAQTQSDEPSATNR 291
LSI+C C TCGS ++ P+ R
Sbjct: 312 LSIFCNPDLSDNLCMTCGSYLSLRSAVTNPPALIPR 347
>gi|340717520|ref|XP_003397229.1| PREDICTED: general transcription factor IIH subunit 3-like [Bombus
terrestris]
Length = 292
Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 151/275 (54%), Gaps = 19/275 (6%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL++++LD NP + +Q L + F NA L + NQ+ VIA + +
Sbjct: 6 ETSLLIIVLDVNPVQRIIKQETRILTQCLDSTVVFANAHLMQSSNNQLAVIACHSHGAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNK---DEQLGKQEPEGRIACSLLSG 123
+Y +G+ T+ Q L++ +N+ D+ L + SL+SG
Sbjct: 66 LYPCEKPLEIRQIDGQYEKFTMIERTIRQQLQQVINEISMDKPLNGE--------SLISG 117
Query: 124 SLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
+L+MALCY+ R+ R + + RIL + S D QY+ MN F+AQ+ + +D C
Sbjct: 118 ALTMALCYVARLEREKVASEKIYSRILVITASNDSATQYMNYMNIFFTAQKMGIILDVCS 177
Query: 182 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 241
L Q LQQ ITGG + K QL+GL QYLL IF D + R+ L LP PV VD+RA+
Sbjct: 178 LD-QELTLLQQGCDITGGNYLKVPQLNGLLQYLLWIFLPDPNVRSKLVLPPPVKVDYRAA 236
Query: 242 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
CFCH+ ID+GY+CS+CLSI+CK C+TC +VF
Sbjct: 237 CFCHQELIDIGYVCSICLSIFCKFSPICTTCHTVF 271
>gi|213409415|ref|XP_002175478.1| RNA polymerase II transcription factor B subunit 4
[Schizosaccharomyces japonicus yFS275]
gi|212003525|gb|EEB09185.1| RNA polymerase II transcription factor B subunit 4
[Schizosaccharomyces japonicus yFS275]
Length = 295
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 98/271 (36%), Positives = 149/271 (54%), Gaps = 10/271 (3%)
Query: 11 DDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D SL+VV+LD NP W S S+ L ++ F+NA L + N+V VIA+ +S +
Sbjct: 21 DTPSLLVVILDANPVSWYSLAQKAPISEILADIIVFINAHLAFHHENRVAVIASHTDSVE 80
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQNLEEF--MNKDEQLGKQEPEGRIAC-SLLSGSL 125
++Y ++ ++ P A + E M + E I+ +++SG+L
Sbjct: 81 FLYPTTKDNRKTKQVD--PEKDANTYRKFREVDDMVLEGMARLVESTNSISTKTMMSGAL 138
Query: 126 SMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ 185
S AL YI R+ L + RIL S D QY++ MN IF AQ+ +PI+ C L ++
Sbjct: 139 SRALAYINRIQTESPL--RSRILIFSLSGDVALQYISTMNCIFCAQKKNIPINVCSL-SK 195
Query: 186 NSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCH 245
+ FL+QA TGG++ K ++ GL Q+L+ D + R + +P VDFRA+CFCH
Sbjct: 196 ETLFLEQAVDATGGIYIKVEEPKGLLQHLMMSLFPDQNLRKHINIPNQANVDFRATCFCH 255
Query: 246 KNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
K +D+GY+CSVCLSI+C +C+TC S F
Sbjct: 256 KKILDIGYVCSVCLSIFCSPRDQCTTCHSTF 286
>gi|332019667|gb|EGI60141.1| General transcription factor IIH subunit 3 [Acromyrmex echinatior]
Length = 292
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/277 (38%), Positives = 151/277 (54%), Gaps = 23/277 (8%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL+V++LD NP + SQ L + F NA L + N++ +++ + +
Sbjct: 6 ETSLLVIVLDVNPMQRIVKQETKILSQCLDSTIVFANAHLMQSSNNELAIMSCHGHGARF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNK---DEQLGKQEPEGRIACSLLSG 123
+Y + +G+ T+ Q L++ +N+ D L + SL+SG
Sbjct: 66 LYPCENAIEIRQMDGQYEKFTMVERTVRQQLQQVINEISMDVPLNME--------SLISG 117
Query: 124 SLSMALCYIQRVFRSGL----LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
+LSMALCYI R+ R + LHP R+L + S D QY+ MN F+AQR V +D
Sbjct: 118 ALSMALCYIARLEREKVAGQKLHP--RMLVITASNDSATQYMNYMNIFFTAQRMNVILDV 175
Query: 180 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 239
C L Q LQQ ITGG + K QL GL QYLL +F D R+ L LP PV VD+R
Sbjct: 176 CSLD-QELTLLQQGCDITGGNYLKVPQLAGLLQYLLWVFLPDPSVRSKLVLPPPVKVDYR 234
Query: 240 ASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
A+CFCH+ ID+GY+CS+CLSI+CK C+TC +VF
Sbjct: 235 AACFCHQELIDIGYVCSICLSIFCKFSPICTTCHTVF 271
>gi|198475301|ref|XP_001357006.2| GA18615 [Drosophila pseudoobscura pseudoobscura]
gi|198138760|gb|EAL34072.2| GA18615 [Drosophila pseudoobscura pseudoobscura]
Length = 298
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/273 (38%), Positives = 152/273 (55%), Gaps = 17/273 (6%)
Query: 13 VSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
+ L+V++LDTNP + + +Q L V+AF NA L N++ VI+ +++ +++
Sbjct: 15 IDLLVIVLDTNPSQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVISCAHHATNFL 74
Query: 71 YDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIAC-SLLSGSL 125
Y Q G SL T+ Q L + +LG C SLL+GS+
Sbjct: 75 YPQPRRQVELRQIDGQYEAFSLVEKTVKQQLGSILMNAPRLGS-------PCESLLAGSM 127
Query: 126 SMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 183
+MALCYI R+ R + + RIL L GS + QY+ MN F+AQ+ + ID+C L
Sbjct: 128 AMALCYISRLQRNVAAGVKMHSRILVLTGSNECSSQYMTFMNVFFTAQKLGITIDTCALD 187
Query: 184 AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCF 243
+ + LQQ IT G K QLDGL QYLL +F R+ L LP P VD+RASCF
Sbjct: 188 -KTLSLLQQGCDITTGQFLKVTQLDGLLQYLLWVFLPAPQMRHKLVLPPPPKVDYRASCF 246
Query: 244 CHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
CH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 247 CHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 279
>gi|17945214|gb|AAL48665.1| RE13149p [Drosophila melanogaster]
Length = 299
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 110/284 (38%), Positives = 159/284 (55%), Gaps = 21/284 (7%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A SK + L+V++LDTNP F + + +Q L V+AF NA L N++ V++
Sbjct: 6 AASKEAESCIDLLVIVLDTNPSQHFVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVS 65
Query: 62 TGYNSCDYVYDSSSTGNQ-SVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGRIA 117
+++ +++Y + +G+ + NL E K +QLG P
Sbjct: 66 CSHHATNFLYPLPRRQVELRQVDGQYEAF------NLVEKTVK-QQLGSILMNAPRLSAP 118
Query: 118 C-SLLSGSLSMALCYIQRVFRSGLLHP----QPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
C SLL+GS+SMALCYI R+ R+ L P RIL + GS + QY+ +N F+AQ+
Sbjct: 119 CESLLAGSMSMALCYISRLQRN--LAPGVKMHSRILVVTGSNECASQYMTFLNVFFTAQK 176
Query: 173 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 232
+ ID+C L + + LQQ IT G K QLDGL QYLL +F R+ L LP
Sbjct: 177 LGITIDTCALD-KTLSLLQQGCDITSGQFLKVTQLDGLLQYLLWVFLPAPQIRHKLVLPP 235
Query: 233 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
P VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 236 PPKVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 279
>gi|390602568|gb|EIN11961.1| transcription factor Tfb4 [Punctularia strigosozonata HHB-11173
SS5]
Length = 338
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 153/287 (53%), Gaps = 28/287 (9%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS---------LSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
D + + V++D +P W S+ LS FL+ +LAFLN+ + N + V+
Sbjct: 2 DRAAHLSVVVDLSPPQWLLSAQPGPSNPHPLSLRSFLSQLLAFLNSHIASKPENTLCVLG 61
Query: 62 TG-------YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEG 114
Y+S D+V SS G+ + +P ++ N+ + LG+ E +
Sbjct: 62 AFPGKSGILYSSTDHVSTSSEKGDP---DAYLP-FKVVDAAIIDHITNELDVLGEWEAQE 117
Query: 115 RIACSLLSGSLSMALCYIQRVFR-SGLLHP----QPRILCLQGSPDGPEQYVAIMNAIFS 169
A L G+L+ ALCYI R+ S P +PRIL L SPD Y+ IMN+IFS
Sbjct: 118 STA---LVGALTKALCYINRIMNVSADNEPRSPSEPRILILSVSPDQSTSYIPIMNSIFS 174
Query: 170 AQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQ 229
AQ+ V +D C L S FLQQAS++TGG + + D L QYL+ F R L
Sbjct: 175 AQKLKVTMDVCQLYGPESVFLQQASHLTGGSYIHLEHRDALLQYLIMSFLPPPSIRRTLS 234
Query: 230 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+P +DFRA+CFCHKN +D+G++CSVCLSI+C+ + CSTC + F
Sbjct: 235 VPTQDKIDFRAACFCHKNIVDVGFVCSVCLSIFCQPVPVCSTCRTKF 281
>gi|194759192|ref|XP_001961833.1| GF14734 [Drosophila ananassae]
gi|190615530|gb|EDV31054.1| GF14734 [Drosophila ananassae]
Length = 297
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 112/286 (39%), Positives = 157/286 (54%), Gaps = 21/286 (7%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVV 59
A SK + L+V++LDTNP + + +Q L V+AF NA L N++ V
Sbjct: 3 AETSSKEAESSIDLLVIVLDTNPSQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAV 62
Query: 60 IATGYNSCDYVY---DSSSTGNQSVGNGRMPSLC-ATLLQNLEE-FMNKDEQLGKQEPEG 114
++ +++ +++Y Q G SL T+ Q L MN G E
Sbjct: 63 LSCSHHATNFLYPLPRRQVELRQVDGQYEAFSLVEKTVKQQLGSILMNAPRLNGPSE--- 119
Query: 115 RIACSLLSGSLSMALCYIQRVFR---SGL-LHPQPRILCLQGSPDGPEQYVAIMNAIFSA 170
SLL+GS+SMALCYI R+ R SG+ +H RIL L GS + QY+ MN F+A
Sbjct: 120 ----SLLAGSMSMALCYISRLQRNVTSGVKMHS--RILVLTGSNECASQYMTFMNVFFTA 173
Query: 171 QRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQL 230
Q+ + ID+C L + + LQQ IT G K QL+GL QYLL +F R+ L L
Sbjct: 174 QKLGIVIDTCALD-KTLSLLQQGCDITSGQFLKVTQLEGLLQYLLWVFLPAPQMRHKLVL 232
Query: 231 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
P P VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 233 PPPPKVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 278
>gi|110757998|ref|XP_394705.3| PREDICTED: general transcription factor IIH subunit 3 [Apis
mellifera]
Length = 292
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 148/272 (54%), Gaps = 13/272 (4%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL++++LD NP + +Q L + F NA L + NQ+ VIA + +
Sbjct: 6 ETSLLIIILDVNPVQRIIKQETRILTQCLDSTIVFANAHLMQSSNNQLAVIACHSHGAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+Y +G+ T+ Q L++ +N E + G SL+SG+L+
Sbjct: 66 LYPCEDALEIRQIDGQYEKFTMIELTVRQQLQKVIN--EITSNKILNGE---SLISGALT 120
Query: 127 MALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 184
MALCYI R+ R + + RIL + S D QY+ MN F+AQ+ V +D C L
Sbjct: 121 MALCYIARLEREKIAGEKLYSRILVITASNDSATQYMNYMNIFFTAQKMGVILDVCSLD- 179
Query: 185 QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFC 244
Q LQQ ITGG + K QL+GL QYLL IF D + R+ L P PV VD+RA+CFC
Sbjct: 180 QELTLLQQGCDITGGNYLKVPQLNGLLQYLLWIFLPDPNVRSKLVFPPPVKVDYRAACFC 239
Query: 245 HKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
H+ ID+GY+CS+CLSI+CK C+TC +VF
Sbjct: 240 HQELIDIGYVCSICLSIFCKFSPICTTCHTVF 271
>gi|380030634|ref|XP_003698948.1| PREDICTED: general transcription factor IIH subunit 3-like [Apis
florea]
Length = 292
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 148/272 (54%), Gaps = 13/272 (4%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL++++LD NP + +Q L + F NA L + NQ+ VIA + +
Sbjct: 6 ETSLLIIILDVNPVQRIIKQETRILTQCLDSTIVFANAHLMQSSNNQLAVIACHSHGAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+Y +G+ T+ Q L++ +N E + G SL+SG+L+
Sbjct: 66 LYPCEDALEIRQIDGQYEKFTMIELTVRQQLQKVIN--EITSNKLLSGE---SLISGALT 120
Query: 127 MALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 184
MALCYI R+ R + + RIL + S D QY+ MN F+AQ+ V +D C L
Sbjct: 121 MALCYIARLEREKIAGEKLYSRILVITASNDSATQYMNYMNIFFTAQKMGVILDVCSLD- 179
Query: 185 QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFC 244
Q LQQ ITGG + K QL+GL QYLL IF D + R+ L P PV VD+RA+CFC
Sbjct: 180 QELTLLQQGCDITGGNYLKVPQLNGLLQYLLWIFLPDPNVRSKLVFPPPVKVDYRAACFC 239
Query: 245 HKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
H+ ID+GY+CS+CLSI+CK C+TC +VF
Sbjct: 240 HQELIDIGYVCSICLSIFCKFSPICTTCHTVF 271
>gi|195032196|ref|XP_001988455.1| GH10566 [Drosophila grimshawi]
gi|193904455|gb|EDW03322.1| GH10566 [Drosophila grimshawi]
Length = 300
Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 153/285 (53%), Gaps = 23/285 (8%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A +K + L+ ++LDTNP + + +Q L V+AF NA L N++ VI+
Sbjct: 7 AANKEAEASIDLLAIVLDTNPTQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVIS 66
Query: 62 TGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEF----MNKDEQLGK---QEPEG 114
+++ D++Y GR L + E F +QLG P
Sbjct: 67 CSHHATDFLYPLP---------GRQVEL-RPIDGQYEAFSLVEKTVKQQLGSILMNAPRL 116
Query: 115 RIAC-SLLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ 171
C SLL+GS+SMALCYI R+ R + + RIL L GS + QY+ MN F+AQ
Sbjct: 117 SSPCESLLAGSMSMALCYISRLQRNVAAGVKMHSRILVLTGSNECASQYMTYMNVFFTAQ 176
Query: 172 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLP 231
+ + ID+C L + + LQQ IT G K QLDGL QYLL +F R+ L LP
Sbjct: 177 KLSIVIDACALD-KTLSLLQQGCDITSGQFLKVTQLDGLLQYLLWVFMPSPQMRHKLVLP 235
Query: 232 KPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
P VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 236 PPPKVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 280
>gi|332375937|gb|AEE63109.1| unknown [Dendroctonus ponderosae]
Length = 300
Score = 164 bits (415), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 160/298 (53%), Gaps = 20/298 (6%)
Query: 5 PSKLYSDDVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
P +D++SL+VV+LDTNP + + V+AF N+ L N++ V+A
Sbjct: 12 PEITSADEISLLVVILDTNPTQKMLRDKQNQLTNIVDSVVAFSNSHLMQKAQNKLAVMAC 71
Query: 63 GYNSCDYVYDSSSTG-NQSVGNGRMPSLC---ATLLQNLEEFMNKDEQLGKQEPEGRIAC 118
+ ++Y + + +G+ + T+ QNL E + + E
Sbjct: 72 HSKTSQFIYPGAKKPLDVRQVDGQYEAFLLVEKTVKQNLAELLASESSTAVTE------- 124
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVP 176
SLL+G+++MALCYI R+ R+ + RIL + GS D QY+ MN F+AQ+ V
Sbjct: 125 SLLAGAIAMALCYIARLQRTKPPGSKLNSRILVVSGSGDSASQYMNYMNVFFTAQKLNVV 184
Query: 177 IDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGV 236
+D C L Q+ + LQQ ITGG++ K Q+ L Q+LL +F + R L LP PV V
Sbjct: 185 LDVCALD-QHLSLLQQCCDITGGMYLKVPQITALLQFLLWVFLPEPPIREKLVLPPPVKV 243
Query: 237 DFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRK 294
D+RA+CFCH+ ID+G++CSVCLSI+CK C+TC VF + +P +KRK
Sbjct: 244 DYRAACFCHRELIDIGFVCSVCLSIFCKFSPICTTCHMVFKIPGPLAVKP----KKRK 297
>gi|449683803|ref|XP_002159513.2| PREDICTED: general transcription factor IIH subunit 3-like [Hydra
magnipapillata]
Length = 291
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 98/277 (35%), Positives = 148/277 (53%), Gaps = 21/277 (7%)
Query: 14 SLVVVLLDTNPFFWSS----SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+L+V++LD N +W+S ++ F + + VL F N+ L LN N++ ++ +
Sbjct: 8 NLLVIILDINAAWWASQFQNNNDVFQKCIDSVLVFCNSYLMLNHTNKLALVVCNSEQACF 67
Query: 70 VYDSSSTGNQSVG------NGR---MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL 120
+Y +SS + +G+ + TL + + P SL
Sbjct: 68 LYPNSSKSTSGISIETSQKDGKYELFSEMNETLQCEFKRLFAESVSNMTNRP------SL 121
Query: 121 LSGSLSMALCYIQRVFRSGL-LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
L+G+L+ ALCYI R+ RIL ++GS D QY+ +MN IF+A + + ID
Sbjct: 122 LAGALTKALCYIHSHDRTANGRRTNARILIIKGSSDSSSQYMTVMNCIFAASKKNIVIDC 181
Query: 180 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 239
C L NS F+QQAS ITGGV+ G+ +YLL IF D R L LP +D+R
Sbjct: 182 CAL-QNNSGFMQQASDITGGVYFFIDDFSGMLEYLLWIFLPDPGLREKLNLPTSSQIDYR 240
Query: 240 ASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
A+CFCHK +D+G++CSVCLSIYC+ + KC+TC + F
Sbjct: 241 AACFCHKQLVDVGFVCSVCLSIYCQFMPKCATCQTRF 277
>gi|303274264|ref|XP_003056454.1| RNA polymerase II transcription factor B subunit 4 [Micromonas
pusilla CCMP1545]
gi|226462538|gb|EEH59830.1| RNA polymerase II transcription factor B subunit 4 [Micromonas
pusilla CCMP1545]
Length = 296
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 104/277 (37%), Positives = 150/277 (54%), Gaps = 19/277 (6%)
Query: 8 LYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
L SD S++V+L +TNP WS SF + L +L ++ L+L++ N+VV+IA
Sbjct: 22 LPSDGSSVLVILFETNPLLWSGLGGRLDGKESFDETLRQLLVYMIGFLSLHEQNRVVIIA 81
Query: 62 TGYN--SCDYVYDSSSTGNQSVGN-GRMPSLCATLLQNLEEF---MNKDEQLGKQEPEGR 115
N C Y + ++G + N G LCA ++ NL M D L +
Sbjct: 82 LHSNVEHCMYAIPTLASGENDLTNTGSKSDLCAQVISNLATLAMRMRSDFDLSTKSNMP- 140
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
L+ +SMALC + R R H PRILC+ GS D QY + MNAIFSA+ S V
Sbjct: 141 -----LTTVISMALCCVNRA-RVYKPHCSPRILCILGSQDSSGQYFSGMNAIFSAKNSGV 194
Query: 176 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVG 235
ID+C LG +S FLQQA+ ITGG + QQ + YLL+ R LQ P+
Sbjct: 195 RIDACLLGYTDSFFLQQAAQITGGSYCMLQQGEKALYYLLSDLPGSESIRAKLQSPRKFC 254
Query: 236 VDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTC 272
+++A+CFCH+ + +G++CSVCL+I+C+ +KC C
Sbjct: 255 SEYQATCFCHEVNLQVGFVCSVCLTIFCERCRKCLAC 291
>gi|396462438|ref|XP_003835830.1| similar to RNA polymerase II transcription factor B subunit 4
[Leptosphaeria maculans JN3]
gi|312212382|emb|CBX92465.1| similar to RNA polymerase II transcription factor B subunit 4
[Leptosphaeria maculans JN3]
Length = 375
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 111/336 (33%), Positives = 168/336 (50%), Gaps = 67/336 (19%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SS+LS S L ++L F+NA L N+V VIA+ + ++Y
Sbjct: 20 SLLAIVLDTNPHAWAHLSSTLSLSAALANILVFINAHLASGNANEVAVIASHSHKTTFLY 79
Query: 72 D--SSSTGNQSVGNGRM----------PSLCA-------------TLLQNLEEFMNK-DE 105
SSS + NG + P + +L+N + +++ +E
Sbjct: 80 PTPSSSPRPRKAANGDVEMNGAGGNSEPHMAENPNKYRPFAIVENAILRNFAKLLDETNE 139
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP---------------------- 143
+ P +L+ G+LS+AL +I + +LH
Sbjct: 140 RHLAATP-----TTLIGGALSLALTHINK---QTMLHAPTAASAESASLAALADAENTHV 191
Query: 144 -----QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITG 198
RIL + S D QY+ +MN+IF+AQR +PID L A ++ LQQAS TG
Sbjct: 192 DRIPLTSRILIVSVSGDLANQYIPVMNSIFAAQRKRIPIDILKL-AGDTVLLQQASDATG 250
Query: 199 GVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVC 258
GV+ KP++ +GL QYL+ F D+ +R L +P GVDFRA+CFCH+ +D+G++CSVC
Sbjct: 251 GVYMKPERPEGLLQYLMMAFLPDVTARASLVVPNAGGVDFRAACFCHRRVVDIGFVCSVC 310
Query: 259 LSIYCK---HLKKCSTCGSVFGQAQTQSDEPSATNR 291
LSI+C C TCGS ++ P+ R
Sbjct: 311 LSIFCSPDLPDNLCLTCGSYLSLRSAMTNTPALIPR 346
>gi|426197233|gb|EKV47160.1| hypothetical protein AGABI2DRAFT_204058 [Agaricus bisporus var.
bisporus H97]
Length = 361
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 143/274 (52%), Gaps = 19/274 (6%)
Query: 18 VLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD 72
V+LD P W S+ L+ FL+HVL FLNA + N N + V + +Y
Sbjct: 6 VVLDLPPAQWHRSARHDPPLALPDFLSHVLVFLNAHIANNAENSLAVFGAFPGTSPLLYS 65
Query: 73 SSST--GNQSVGNGRMPSLCATLLQNLEEFMNKDEQLG-KQEPEGRIACSLLSGSLSMAL 129
S+ + + PS + LG + PE S L G+++ AL
Sbjct: 66 SADPVPARLPIDSNSYPSFVHLDHAVARRVTAVLDSLGTDRAPEP----SALVGAITKAL 121
Query: 130 CYIQRVFRSG-------LLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL 182
CY+ R+ S + P PR+L L SPD Y+ IMN++FSAQ+ V ID C +
Sbjct: 122 CYVNRLAISPSSAAPAEHVLPDPRLLILSVSPDLATSYIPIMNSVFSAQKLKVTIDVCQV 181
Query: 183 GAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASC 242
++ FLQQA+++TGG + ++ D L QYL+ F R L +P VDFRA+C
Sbjct: 182 FGPDTVFLQQAAHLTGGSYIHLERRDALLQYLIMAFLPPPPIRKVLAVPTQDKVDFRAAC 241
Query: 243 FCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
FCHKN +D+G++CSVCLSI+C+ + CSTC + F
Sbjct: 242 FCHKNIVDIGFVCSVCLSIFCQPVPVCSTCRTKF 275
>gi|409080333|gb|EKM80693.1| hypothetical protein AGABI1DRAFT_119282 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 361
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 99/274 (36%), Positives = 143/274 (52%), Gaps = 19/274 (6%)
Query: 18 VLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD 72
V+LD P W S+ L+ FL+HVL FLNA + N N + V + +Y
Sbjct: 6 VVLDLPPAQWHRSARHDPPLALPDFLSHVLVFLNAHIANNAENSLAVFGAFPGTSPLLYS 65
Query: 73 SSST--GNQSVGNGRMPSLCATLLQNLEEFMNKDEQLG-KQEPEGRIACSLLSGSLSMAL 129
S+ + + PS + LG + PE S L G+++ AL
Sbjct: 66 SADPVPARLPIDSNSYPSFVHLDHAVARRVTAVLDSLGTDRAPEP----SALVGAITKAL 121
Query: 130 CYIQRVFRSG-------LLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL 182
CY+ R+ S + P PR+L L SPD Y+ IMN++FSAQ+ V ID C +
Sbjct: 122 CYVNRLAISPSSAAPAEHVLPDPRLLILSVSPDLATSYIPIMNSVFSAQKLKVTIDVCQV 181
Query: 183 GAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASC 242
++ FLQQA+++TGG + ++ D L QYL+ F R L +P VDFRA+C
Sbjct: 182 FGPDTVFLQQAAHLTGGSYIHLERRDALLQYLIMAFLPPPPIRKVLAVPTQDKVDFRAAC 241
Query: 243 FCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
FCHKN +D+G++CSVCLSI+C+ + CSTC + F
Sbjct: 242 FCHKNIVDIGFVCSVCLSIFCQPVPVCSTCRTKF 275
>gi|383855904|ref|XP_003703450.1| PREDICTED: general transcription factor IIH subunit 3-like
[Megachile rotundata]
Length = 292
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 149/275 (54%), Gaps = 19/275 (6%)
Query: 12 DVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ SL++++LD NP + +Q L + F NA L + NQ+ +IA + +
Sbjct: 6 ETSLLIIVLDVNPVQRIVKQETRILTQCLDSTIVFANAHLMQSSNNQLAMIACHSHGAKF 65
Query: 70 VYDSSSTGNQSVGNGRMPSLCA---TLLQNLEEFMNK---DEQLGKQEPEGRIACSLLSG 123
+Y +G+ T+ Q L++ +N+ D+ L + SL+SG
Sbjct: 66 LYPCEKPVEIRQIDGQYEKFTMVERTVRQQLQQVINEISMDKPLNGE--------SLISG 117
Query: 124 SLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
+L+MALCYI R+ R + + RIL + S D QY+ MN F+AQ+ V +D C
Sbjct: 118 ALTMALCYIARLEREKVAGQKLYSRILTITASNDSATQYMNYMNIFFTAQKMGVILDVCS 177
Query: 182 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 241
L Q LQQ ITGG + K QL GL QYLL IF D R+ L LP PV VD+RA+
Sbjct: 178 LD-QELTLLQQGCDITGGNYLKVPQLSGLLQYLLWIFLPDPSIRSKLVLPPPVKVDYRAA 236
Query: 242 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
CFCH+ ID+GY+CSVCLSI+CK C+TC +VF
Sbjct: 237 CFCHQELIDIGYVCSVCLSIFCKFSPICTTCHTVF 271
>gi|430811432|emb|CCJ31073.1| unnamed protein product [Pneumocystis jirovecii]
gi|430812043|emb|CCJ30521.1| unnamed protein product [Pneumocystis jirovecii]
Length = 284
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 103/272 (37%), Positives = 146/272 (53%), Gaps = 27/272 (9%)
Query: 10 SDDVS-LVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
DDVS L+VV+LDTNPF W + S + F + L FLNA L+ NQ N + V+A+ N
Sbjct: 18 EDDVSNLLVVILDTNPFGWDALSEYIPFDVAIREFLVFLNAHLSSNQNNDLAVLASHTNF 77
Query: 67 CDYVYDS----SSTGNQSVGNGRMPS-------------LCATLLQNLEEFMNKDEQLGK 109
Y+Y S S ++V + + + NL++ ++K + +
Sbjct: 78 VQYLYPSVQVSSKDNEKAVEENKEDKDFQKSNIYRPFYLMNKQIQDNLKKLIDKANEQDE 137
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQGSPDGPEQYVAIMNAIF 168
P +++ GSL MAL Y+ R +S + RIL + S D QY+ IMN IF
Sbjct: 138 DTPS-----TMIGGSLCMALAYVNRAMQSASKNRLNARILIISVSSDITFQYIPIMNCIF 192
Query: 169 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFL 228
AQ+ +PID C +G ++ FLQQAS T G++ + L QYLL IF D R L
Sbjct: 193 GAQKKKIPIDVCKIGG-DTVFLQQASDATKGIYLHLDKPKSLLQYLLMIFLPDQKVRQHL 251
Query: 229 QLPKPVGVDFRASCFCHKNTIDMGYICSVCLS 260
LP + VDFRA+CFCHK +D+G++CSVCLS
Sbjct: 252 VLPFQLNVDFRAACFCHKKILDIGFVCSVCLS 283
>gi|195159598|ref|XP_002020665.1| GL15043 [Drosophila persimilis]
gi|194117615|gb|EDW39658.1| GL15043 [Drosophila persimilis]
Length = 298
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 153/282 (54%), Gaps = 17/282 (6%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S + L+V++LDTNP + + +Q L V+AF NA L N++ VI+
Sbjct: 6 AASTETESGIDLLVIVLDTNPSQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVIS 65
Query: 62 TGYNSCDYVYDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIA 117
+++ +++Y Q G SL T+ Q L + +LG
Sbjct: 66 CAHHATNFLYPQPRRQVELRQIDGQYEAFSLVEKTVKQQLGSILMNAPRLGS-------P 118
Query: 118 C-SLLSGSLSMALCYIQRV--FRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSM 174
C SLL+GS++MALCYI R+ + + RIL L GS + QY+ MN F+AQ+
Sbjct: 119 CESLLAGSMAMALCYISRLHGMLAAGVKMHSRILVLTGSNECSSQYMTFMNVFFTAQKLG 178
Query: 175 VPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPV 234
+ ID+C L + + LQQ IT G K QLDGL QYLL +F R+ L LP P
Sbjct: 179 ITIDTCALD-KTLSLLQQGCDITTGQFLKVTQLDGLLQYLLWVFLPAPQMRHKLVLPPPP 237
Query: 235 GVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 238 KVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 279
>gi|198432365|ref|XP_002120803.1| PREDICTED: similar to general transcription factor IIH, polypeptide
3, 34kDa [Ciona intestinalis]
Length = 309
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/297 (33%), Positives = 155/297 (52%), Gaps = 42/297 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLS----FSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
++ L+VV+ D NP +W SL ++ L +L F+N+ L L N++ +IA+
Sbjct: 4 EEERQLLVVIFDVNPVWWGIKSLQGQAQITKCLDCLLVFVNSYLMLRHDNKLAIIASHST 63
Query: 66 SCDYVY-----------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPE- 113
++Y +S +Q+ G+ R E F D+ + + E
Sbjct: 64 KSVFLYPAQESSHSPDPSKASISDQAGGDCR-----------YEHFAKVDDSVTDKFKEL 112
Query: 114 GRIAC--------SLLSGSLSMALCYIQR--VFRSGLLHPQPRILCLQGSPDGPEQYVAI 163
R C SL++GS+++ALCYI R + G RIL ++ + D QY++
Sbjct: 113 MRDGCEKNDIRRDSLIAGSMAIALCYIHRMQIESQGNTKLNARILVIKAADDAASQYMSF 172
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
MN IF+AQ+ V +D+C LG Q+S LQQA +T G++ K D QYLLT F T+
Sbjct: 173 MNVIFAAQKERVVVDACILG-QDSGLLQQACDMTSGMYLKVPHQDAFLQYLLTAFLTEAE 231
Query: 224 SRN----FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
R Q +P VD+RA+CFCH++ +D+G++CSVCLSI+C+ CSTC + F
Sbjct: 232 LRKESLVLAQSSRPREVDYRAACFCHRSLVDVGFVCSVCLSIFCQFSPICSTCETAF 288
>gi|195470427|ref|XP_002087508.1| GE15755 [Drosophila yakuba]
gi|194173609|gb|EDW87220.1| GE15755 [Drosophila yakuba]
Length = 299
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 107/284 (37%), Positives = 154/284 (54%), Gaps = 21/284 (7%)
Query: 4 APSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A SK + L+V++LDTNP + + +Q L V+AF NA L N++ V++
Sbjct: 6 AASKEAESCIDLLVIVLDTNPSQHIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVVS 65
Query: 62 TGYNSCDYVY---DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGR 115
+++ +++Y Q G SL ++ +QLG P
Sbjct: 66 CSHHATNFLYPLPRRQVELRQVDGQYEAFSLVEKTVK---------QQLGSILMNAPRLS 116
Query: 116 IAC-SLLSGSLSMALCYIQRVFRSGL--LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
C SLL+GS+SMALCYI R+ R+ + RIL + GS + QY+ MN F+AQ+
Sbjct: 117 APCESLLAGSMSMALCYISRLQRNVAPGVKMHSRILVITGSNECASQYMTFMNVFFTAQK 176
Query: 173 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 232
+ ID+C L + + LQQ IT G K QLDGL QYLL +F R+ L LP
Sbjct: 177 LGITIDTCALD-KTLSLLQQGCDITSGQFLKVTQLDGLLQYLLWVFLPAPQIRHKLVLPP 235
Query: 233 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
P VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 236 PPKVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 279
>gi|395332939|gb|EJF65317.1| transcription factor Tfb4 [Dichomitus squalens LYAD-421 SS1]
Length = 324
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 148/290 (51%), Gaps = 30/290 (10%)
Query: 11 DDVSLVVVLLDTNPFFWS-------SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D S + V++D +P W+ L FL+ +LAFLNA + N + V
Sbjct: 2 DKPSHLSVIVDLSPTQWALCAQSTAPPGLHLQTFLSQLLAFLNAHIACKDENTLAVFGAF 61
Query: 64 YNSCDYVYDSS-----STGNQSVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
+Y S+ +T + N P +L +T++ ++ E N + ++EP G +
Sbjct: 62 PGQSVMLYSSTGEIMTATTEATDPNTYRPFKTLDSTVMSSIAERFNSYDVTEEEEPIGLV 121
Query: 117 ACSLLSGSLSMALCYIQRVF----------RSGLLHPQPRILCLQGSPDGPEQYVAIMNA 166
C L+ ALCYI R + PRIL L SPD Y+ IMN+
Sbjct: 122 GC------LTKALCYINRTISVVSASAQGTEGATISIDPRILVLSVSPDQSSTYIPIMNS 175
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 226
IFSAQ+ V ID C + + FLQQA+++TGG + + ++ D L QY++ F R
Sbjct: 176 IFSAQKLKVTIDVCKVFGAENVFLQQAAHLTGGAYVQIERTDALLQYMMMSFLPPPAIRQ 235
Query: 227 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+ +P VDFRA+CFCHK +++G++CSVCLSI+C+ + CSTC + F
Sbjct: 236 LISVPTQDRVDFRAACFCHKRIVEIGFVCSVCLSIFCQPVPVCSTCRTKF 285
>gi|407926572|gb|EKG19539.1| Transcription factor Tfb4 [Macrophomina phaseolina MS6]
Length = 380
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 156/317 (49%), Gaps = 66/317 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W+ + +L S+ + ++L F+NA L +N NQV V+A+ + ++Y
Sbjct: 20 SLLTIIIDTNPHAWAFLADTLPLSKAIANLLVFINAHLAINSANQVAVLASHSHQATWLY 79
Query: 72 ----------------------------DSSSTGNQSVGNGRMP--SLCATLLQNLEEFM 101
D S T + N P ++ LL NL M
Sbjct: 80 PTPHPPKAKRRNAPNGNKEENGDADGDVDMSDTPSMDDANKYRPFRNVETELLANLRVLM 139
Query: 102 NKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRV------------------------FR 137
+ ++ + +L++G+L+ AL YI + R
Sbjct: 140 ARTSEMDLKAS----TTTLVAGALTTALAYIAKANIKSAPQVGDTQMADLATAADPPAAR 195
Query: 138 SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYIT 197
S L RIL L S D QY+ +MNAIF+AQR +PID L A ++ FLQQA T
Sbjct: 196 SSLTS---RILVLSVSGDLASQYIPVMNAIFAAQRQRIPIDILKL-AGDTVFLQQACDAT 251
Query: 198 GGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSV 257
GG++ KP +GL QYL+ F D +R L LP VDFRA+CFCH+ +D+GY+CSV
Sbjct: 252 GGIYLKPLAPEGLLQYLMMAFLPDETARKHLVLPSAGEVDFRAACFCHRRVVDIGYVCSV 311
Query: 258 CLSIYCKHL--KKCSTC 272
CLSI+C+ + C TC
Sbjct: 312 CLSIFCEPPADQTCPTC 328
>gi|392570135|gb|EIW63308.1| transcription factor Tfb4 [Trametes versicolor FP-101664 SS1]
Length = 329
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 151/290 (52%), Gaps = 30/290 (10%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D S + V+LD +P W+ S+ +S FL+ +LAFLNA + N + V
Sbjct: 2 DTPSHLSVILDLSPTQWALSAQSTNPPGISLETFLSQLLAFLNAHIACKDENTLAVFGAL 61
Query: 64 YNSCDYVYDSS-----STGNQSVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
+Y S+ S + N P +L AT++++L E + ++ P G +
Sbjct: 62 PGESVLLYSSTGEVTASDDGPTDSNTYRPFKTLDATVMKSLAERLESFGDAAEEAPIGIV 121
Query: 117 ACSLLSGSLSMALCYIQRVF-RSGLLHPQ---------PRILCLQGSPDGPEQYVAIMNA 166
C ++ ALCYI R+ + P PRIL L SPD Y+ IMN+
Sbjct: 122 GC------MTKALCYINRITSNTTAAGPNEDGPTASIDPRILVLSVSPDQSSTYIPIMNS 175
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 226
IFSAQ+ V ID C + ++ FLQQA+++TGG + + + D L QY++ F R
Sbjct: 176 IFSAQKLKVTIDVCKIFGADNVFLQQAAHLTGGAYVQVDRTDALLQYMMMSFLPPPAIRQ 235
Query: 227 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+ +P VDFRA+CFCHK +++G++CSVCLSI+C+ + CSTC + F
Sbjct: 236 LIAVPTQDRVDFRAACFCHKRIVEIGFVCSVCLSIFCQPVPVCSTCRTKF 285
>gi|393217355|gb|EJD02844.1| Tfb4-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 378
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 150/290 (51%), Gaps = 30/290 (10%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSL-------SFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D S + ++LD +P W SSL SF FL LAFLN+ L L N + V
Sbjct: 2 DRPSHLAIILDLSPTQWHLSSLPKNAYPLSFKSFLAQTLAFLNSHLALKHENTLAVYGAF 61
Query: 64 YNSCDYVYDSSSTGNQSVG------NGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGR 115
+Y S + V N +P + + + + E ++ ++ P
Sbjct: 62 PGKSVLLYSSMDHKPEGVDDSIADPNTYLPFKVVDTAVTKRISEELDAMSDFDEEAP--- 118
Query: 116 IACSLLSGSLSMALCYIQRVFRS---------GLLHPQPRILCLQGSPDGPEQYVAIMNA 166
C L+ G+L+ ALC+I R+ ++ P+PRI+ L SPD Y+ +MN+
Sbjct: 119 --CQLV-GALTKALCHINRLVNPTATSIDSDVPVVPPEPRIVILSVSPDLSTSYIPLMNS 175
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 226
IFSAQ+ V ID C + ++ FLQQA+++TGG + ++ D L Q+LL F R
Sbjct: 176 IFSAQKLKVAIDVCKIYGPDAVFLQQAAHLTGGSYIYLERRDALLQHLLMTFLPTPSIRQ 235
Query: 227 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+ +P +DFRA+CFCHK +D+G++CSVCLSI+C+ + CSTC + F
Sbjct: 236 LIAVPTQDKIDFRAACFCHKTIVDIGFVCSVCLSIFCQPVPVCSTCRTKF 285
>gi|296421687|ref|XP_002840396.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636611|emb|CAZ84587.1| unnamed protein product [Tuber melanosporum]
Length = 357
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 101/297 (34%), Positives = 159/297 (53%), Gaps = 44/297 (14%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+V++LDTNP+ WS S++L + L +L FLN + + N+V VIA+ S ++Y
Sbjct: 19 SLLVLILDTNPYAWSTLSATLPLERALASILIFLNVHMAFSHANRVAVIASHTRSARFLY 78
Query: 72 DSSSTGN-------------QSVGNGRMPSLCATLLQ-NLEEFMNK---DEQLGKQEPEG 114
++++ + R L +Q + E M + E + +E
Sbjct: 79 PTTTSTTTAAGGSGGSEDPFRDANKYRQFRLIEDQVQASFAELMRQTTASELVDAKE--- 135
Query: 115 RIACSLLSGSLSMALCYIQRVFR---SG------------LLHPQPRILCLQGSPDGPEQ 159
++++G+L +AL Y+ R+ R SG + RIL + S D EQ
Sbjct: 136 ----TMMAGALGLALGYVNRLVRVDDSGGVVGGKDGAVGEVTSMNARILVVSVSGDLAEQ 191
Query: 160 YVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFG 219
YV +MN+IF+AQR +PID C + + + FLQQAS T G++ + + + L QYL+ F
Sbjct: 192 YVPVMNSIFAAQRKKIPIDICKVAGE-TVFLQQASDTTRGIYMQLEHPESLLQYLMMCFI 250
Query: 220 TDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCGS 274
D +R L P V VDFRA+CFCHKN +D+G++CS+CLSI+C + C+TC +
Sbjct: 251 PDTATRRHLVPPTQVNVDFRAACFCHKNVVDIGFVCSICLSIFCTPPEGAICTTCNT 307
>gi|195388531|ref|XP_002052933.1| GJ17829 [Drosophila virilis]
gi|194149390|gb|EDW65088.1| GJ17829 [Drosophila virilis]
Length = 300
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 153/284 (53%), Gaps = 21/284 (7%)
Query: 4 APSKLYSDDVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A +K + L+ ++LDTNP + + +Q L V+AF NA L +++ VI+
Sbjct: 7 AANKEAEASIDLLAIVLDTNPSQQIVRQNPQNLTQILEAVIAFGNAHLMQKAQSKLAVIS 66
Query: 62 TGYNSCDYVY---DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGR 115
+++ D++Y Q G SL ++ +QLG P
Sbjct: 67 CSHHATDFLYPLPGRQVELRQIDGQYEAFSLVEKTVK---------QQLGSILMNAPRLS 117
Query: 116 IAC-SLLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
+C SLL+GS+SMALCYI R+ R + + RIL L GS + QY+ MN F+AQ+
Sbjct: 118 ASCESLLAGSMSMALCYISRLQRNVAAGVKMHSRILVLTGSNECASQYMTYMNVFFTAQK 177
Query: 173 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 232
+ ID+C L + + LQQ IT G K QLDGL QYLL +F R+ L LP
Sbjct: 178 LGIVIDTCALD-KTLSLLQQGCDITNGQFLKVTQLDGLLQYLLWVFLPSPQMRHKLVLPP 236
Query: 233 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
VD+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 237 TPKVDYRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 280
>gi|19112324|ref|NP_595532.1| transcription factor TFIIH complex subunit Tfb4
[Schizosaccharomyces pombe 972h-]
gi|62901129|sp|O74366.1|TFB4_SCHPO RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|3417433|emb|CAA20320.1| transcription factor TFIIH complex subunit Tfb4
[Schizosaccharomyces pombe]
Length = 297
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 149/279 (53%), Gaps = 24/279 (8%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+D SL+VV+LD NP W S S + S+ L + FLNA L + N+V V+A+ +
Sbjct: 20 NDTPSLLVVILDANPASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHSDKV 79
Query: 68 DYVYDSSSTGNQSVGN----------GRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
+Y+Y S + Q V + + +L ++ M+ +++ ++
Sbjct: 80 EYLYPSIAP-EQKVAEVDPTKEANTYRKFREVDDLVLSGMKRLMSSTDKVSRK------- 131
Query: 118 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPI 177
+++SG+LS AL YI +V L + RIL + D QY+ MN IF AQ+ +PI
Sbjct: 132 -TMISGALSRALAYINQVQNKNTL--RSRILIFSLTGDVALQYIPTMNCIFCAQKKNIPI 188
Query: 178 DSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVD 237
+ C + + FL+QA+ TGG++ K GL QYL+ D + R L P VD
Sbjct: 189 NVCNIEG-GTLFLEQAADATGGIYLKVDNPKGLLQYLMMSLFPDQNLRKHLNTPNQANVD 247
Query: 238 FRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
FRA+CFCHK +D+G++CSVCLSI+C+ CSTC + F
Sbjct: 248 FRATCFCHKKVLDIGFVCSVCLSIFCEPRVHCSTCHTKF 286
>gi|327276109|ref|XP_003222813.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 3-like [Anolis carolinensis]
Length = 360
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 158/288 (54%), Gaps = 29/288 (10%)
Query: 11 DDVSLVVVLLDTNPFFWSS-----SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
D+++L+V+++DTNP +W S L+ S+ L + N+ L +N+ N++ VIA+
Sbjct: 61 DELNLLVIVVDTNPIWWGKQALIGSKLTLSKCLDASMVLGNSHLFMNRNNKLAVIASHIQ 120
Query: 66 SCDYVY---------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ 110
++Y D++ G++ + ++ T+ + +++ M K + Q
Sbjct: 121 ESRFLYPGKRWEIIDIFGEAVDANMYGSKDGKYELLTTVNETIAEEIQDLMTK-SGIKWQ 179
Query: 111 EPEGRIACSLLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNAIF 168
+ E + L L+ AL YI RV + S + RIL ++ + D QY+ MN IF
Sbjct: 180 QTE-----TCLYXYLTKALWYIHRVSKTESASQEIKSRILVIKAAEDSALQYMNFMNVIF 234
Query: 169 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFL 228
+AQ+ + ID+C L + +S LQQA ITGG++ K L QYLL +F D R+ L
Sbjct: 235 AAQKQNILIDACVLES-DSGLLQQACDITGGIYLKVPHKPSLLQYLLWVFLPDHDQRSQL 293
Query: 229 QLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
LP V VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 294 ILPPRVHVDYRAACFCHRNLIEVGYVCSVCLSIFCNFSPICTTCETAF 341
>gi|393244851|gb|EJD52362.1| transcription factor Tfb4 [Auricularia delicata TFB-10046 SS5]
Length = 338
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 150/289 (51%), Gaps = 37/289 (12%)
Query: 14 SLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
S + ++LD +P W + L+ FLT LAF+NA L N +VV+
Sbjct: 5 SHLALILDLSPTQWHLCGTAAEHPLALRDFLTQTLAFVNAHLAARDENSLVVLGALPGKS 64
Query: 68 DYVY----DSSSTGNQSVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLL 121
+Y D S N + N P ++ T+++ + + ++ + ++EP L
Sbjct: 65 VLLYASNEDFSGMANVADANSYQPFKAVDTTVMKRVIDELSSLGDITEEEPTS------L 118
Query: 122 SGSLSMALCYIQRVFRSGLLHPQP--------------RILCLQGSPDGPEQYVAIMNAI 167
G+L+ ALC+I R+ HP P RIL L SPD Y+ +MN+I
Sbjct: 119 VGALTKALCHINRI-----THPPPPANPSESPPTPPEARILILSVSPDLSTSYIPLMNSI 173
Query: 168 FSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF 227
FSAQ+ ID C + ++ FLQQA+++TGG + + + L QYL+ F + R+
Sbjct: 174 FSAQKLKAIIDVCKVFGPDAVFLQQAAHLTGGSYVYLLEREALLQYLIMSFLSPPMVRSI 233
Query: 228 LQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
L +P +DFRA+CFCHKN ID+GY+CSVCLSI+C + CSTC + F
Sbjct: 234 LSVPTQEKIDFRAACFCHKNIIDVGYVCSVCLSIFCTPVAVCSTCRTKF 282
>gi|2257568|dbj|BAA21460.1| basic transcription factor 2.35KD subunit [Schizosaccharomyces
pombe]
Length = 298
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 97/279 (34%), Positives = 149/279 (53%), Gaps = 24/279 (8%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+D SL+VV+LD NP W S S + S+ L + FLNA L + N+V V+A+ +
Sbjct: 20 NDTPSLLVVILDANPASWYSLSKKVPVSKVLADITVFLNAHLAFHHDNRVAVLASHSDKV 79
Query: 68 DYVYDSSSTGNQSVGN----------GRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
+Y+Y S + Q V + + +L ++ M+ +++ ++
Sbjct: 80 EYLYPSIAP-EQKVAEVDPTKEANTYRKFREVDDLVLSGMKRLMSSTDKVSRK------- 131
Query: 118 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPI 177
+++SG+LS AL YI +V L + RIL + D QY+ MN IF AQ+ +PI
Sbjct: 132 -TMISGALSRALAYINQVQNKNTL--RSRILIFSLTGDVALQYIPTMNCIFCAQKKNIPI 188
Query: 178 DSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVD 237
+ C + + FL+QA+ TGG++ K GL QYL+ D + R L P VD
Sbjct: 189 NVCNIEG-GTLFLEQAADATGGIYLKVDNPKGLLQYLMMSLFPDQNLRKHLNTPNQANVD 247
Query: 238 FRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
FRA+CFCHK +D+G++CSVCLSI+C+ CSTC + F
Sbjct: 248 FRATCFCHKKVLDIGFVCSVCLSIFCEPRVHCSTCHTKF 286
>gi|427787947|gb|JAA59425.1| Putative transcription factor tfb4 [Rhipicephalus pulchellus]
Length = 293
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 157/275 (57%), Gaps = 16/275 (5%)
Query: 11 DDVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D+ SL+V ++DTNP + S+FL F N+ L LN N++ VIA +
Sbjct: 5 DEGSLLVTIIDTNPCASLLQNEEGIVSRFLDAATVFCNSHLMLNPCNRLAVIACHSHKSS 64
Query: 69 YVYDSS--STGNQSVGNGR---MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
+VY + ST + +G+ + + + + ++E ++ D+ E +++ +LL+G
Sbjct: 65 FVYPKALPSTQDTVSVDGQYELFSEVTSAIKEGVKELVSSDKG------ESQVSETLLTG 118
Query: 124 SLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
LS+ALCYI R+ + +G RIL L S + QY+ MN F+AQ+ V ID+C
Sbjct: 119 GLSLALCYINRIEKETAGQKKIASRILVLSASGESASQYLNFMNVFFTAQKKNVIIDACV 178
Query: 182 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 241
L ++S LQQ ITGG + K GL +YLL +F D +R++L P PV VD+RA+
Sbjct: 179 L-EKDSGLLQQGCDITGGKYMKVPNHTGLLEYLLWLFLPDKATRDYLVFPPPVHVDYRAA 237
Query: 242 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
CFCH+N I++GY+CSVCLSI+C CSTC + F
Sbjct: 238 CFCHRNLIEIGYVCSVCLSIFCAFSPICSTCQTAF 272
>gi|326929605|ref|XP_003210949.1| PREDICTED: general transcription factor IIH subunit 3-like
[Meleagris gallopavo]
Length = 290
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 148/268 (55%), Gaps = 27/268 (10%)
Query: 29 SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY--------DSSSTGNQS 80
S + S+ + + N+ L +++ N++ VIA+ ++Y D G S
Sbjct: 11 SLDFTLSKCIDAAMVLGNSHLFMSRTNKLAVIASHTQESRFLYPGKRWASADLLGDGGNS 70
Query: 81 V-------GNGRMPSLCA---TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALC 130
V +G+ L A + + +++ M K + +G+Q +LL+GSL+ ALC
Sbjct: 71 VESNCSGSKDGKYELLTAINDAIAEEIKDLMTKTDMMGQQTE------TLLAGSLAKALC 124
Query: 131 YIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSA 188
YI ++ + + + RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S
Sbjct: 125 YINKMSKEVKANQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQSILIDACVLDS-DSG 183
Query: 189 FLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNT 248
LQQA ITGG++ K L L QYLL +F D R+ L LP PV VD+RA+CFCH+N
Sbjct: 184 LLQQACDITGGIYLKVPHLPSLLQYLLWVFLPDQEQRSQLVLPPPVHVDYRAACFCHRNL 243
Query: 249 IDMGYICSVCLSIYCKHLKKCSTCGSVF 276
I++GY+CSVCLSI+C CSTC + F
Sbjct: 244 IEIGYVCSVCLSIFCNFSPICSTCETAF 271
>gi|345497965|ref|XP_001603853.2| PREDICTED: general transcription factor IIH subunit 3-like [Nasonia
vitripennis]
Length = 295
Score = 157 bits (398), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/276 (38%), Positives = 146/276 (52%), Gaps = 18/276 (6%)
Query: 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
D SL+V++LD NP + +Q L + F NA L N + ++A ++Y
Sbjct: 6 DRSLLVIILDINPMQKLVKQV-LTQCLDSTIVFSNAHLMQTAGNSLAIMACHSQGAQFLY 64
Query: 72 DSSSTGNQSVGNG---RMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMA 128
+ +G + L T+ Q + E + + K E SL+SG+LSMA
Sbjct: 65 PQEKMPDVRQFDGQYEKFTQLERTVRQQIHEMVGEMSMDRKGNEE-----SLISGALSMA 119
Query: 129 LCYIQRVFRSGLL--HPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 186
LCYI R+ R H PRIL + S D QY+ MN F+AQ+ V +D C L +
Sbjct: 120 LCYIARMEREKYAGEHLHPRILVITASHDSATQYMNYMNIFFTAQKMGVMLDVCSLDHEL 179
Query: 187 SAFLQQASYITGGVHHK-PQQ-----LDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRA 240
+ LQQ +TGG + K PQQ L GL QYLL +F D R+ L LP PV VD+RA
Sbjct: 180 T-LLQQGCDLTGGNYLKIPQQSGQPPLAGLLQYLLWVFLPDPAVRSKLVLPPPVKVDYRA 238
Query: 241 SCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+CFCH+ +D G++CSVCLSI+CK C+TC +VF
Sbjct: 239 ACFCHQELVDTGFVCSVCLSIFCKFSPICTTCHTVF 274
>gi|409045010|gb|EKM54491.1| hypothetical protein PHACADRAFT_258371 [Phanerochaete carnosa
HHB-10118-sp]
Length = 360
Score = 157 bits (397), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 154/290 (53%), Gaps = 30/290 (10%)
Query: 11 DDVSLVVVLLDTNPFFW-------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D+ S + V+LD +P W + ++ L+H+LAFLNA + N + +
Sbjct: 2 DNASHLGVVLDLSPKQWHLAAQPSNPHPITLVASLSHLLAFLNAHIACKDENSLALFGAL 61
Query: 64 YNSCDYVYDSSSTGNQ-----SVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
+Y S+ N+ + N P + +T+++++ +++ E LG+ E E I
Sbjct: 62 PGKSVMLYSSTMPVNEEEIQPADANTYRPFKVMDSTIMKHI---VSEVEALGEPEVEEPI 118
Query: 117 ACSLLSGSLSMALCYIQRVF--------RSGLLH--PQPRILCLQGSPDGPEQYVAIMNA 166
G+L+ A+CYI RV R+ L P PRIL + SPD Y+ +MN
Sbjct: 119 G---FVGALTKAMCYINRVTNGSTSSTSRNDDLATLPDPRILVISVSPDQSSSYIPVMNL 175
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 226
IFSAQ+ V ID C + S FLQQA+++TGG + + D + QYL+ F R
Sbjct: 176 IFSAQKLKVTIDVCKIFGGESVFLQQAAHLTGGSYIDIDRPDAILQYLMMSFLPPPGLRQ 235
Query: 227 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+ +P +DFRA+CFCHKN +D+G++CSVCLSI+C+ + CSTC + F
Sbjct: 236 LISVPTQDKIDFRAACFCHKNIVDIGFVCSVCLSIFCQPVPVCSTCRTKF 285
>gi|195437728|ref|XP_002066792.1| GK24367 [Drosophila willistoni]
gi|194162877|gb|EDW77778.1| GK24367 [Drosophila willistoni]
Length = 303
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 105/279 (37%), Positives = 152/279 (54%), Gaps = 15/279 (5%)
Query: 6 SKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
+K + L+V++LDTNP + + +Q L ++AF NA L N++ VI+
Sbjct: 14 AKESESSIDLLVIVLDTNPSQRIVRQNPQNLTQILEAMIAFGNAHLMQKAQNKLAVISCS 73
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK---QEPEGRIAC-S 119
+++ +++Y G Q R + +E+ + +QLG P C S
Sbjct: 74 HHASNFLYPLP--GRQV--EVRQIDGQYEVFSQVEKTIK--QQLGNILMNAPRLSAPCES 127
Query: 120 LLSGSLSMALCYIQRVFRSGL--LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPI 177
LL+GS+ ALCYI R+ R+ + R+L L GS + QY+ MN F+AQ+ + I
Sbjct: 128 LLAGSIGRALCYISRLQRNTPPGIKMHSRVLVLTGSNECSSQYMTFMNVFFTAQKLGIVI 187
Query: 178 DSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVD 237
D+C L S LQQ IT G K QLDGL QYLL +F R+ L LP P VD
Sbjct: 188 DTCSLENPVS-LLQQGCDITSGQFLKVTQLDGLLQYLLWVFLPSPQMRHKLVLPPPPKVD 246
Query: 238 FRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+RASCFCH+ ID+GY+CSVCLS++CK+ C+TC +VF
Sbjct: 247 YRASCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTVF 285
>gi|357624804|gb|EHJ75440.1| putative transcription factor TFIIH-subunit [Danaus plexippus]
Length = 291
Score = 157 bits (396), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 147/272 (54%), Gaps = 13/272 (4%)
Query: 12 DVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
D SL+V+++DTNP + + + L V+AF N+ L NQ+ VI ++ +Y
Sbjct: 9 DSSLLVIIVDTNPNQRYITEDPKVLTGCLDAVIAFANSHLMQKSRNQLAVIGCHFHKSEY 68
Query: 70 VYDSSSTG---NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+Y S Q G + +L ++ M + Q E R SLL+G+++
Sbjct: 69 LYPSPGKPLDVRQIDGQYELFTLVEKTIK-----MRLVNLIKSQPQEERPGESLLAGAMA 123
Query: 127 MALCYIQRVFRSGL--LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 184
M LC+I R+ R L R+L + GS D QY+ MN F+AQ+ V +D C L
Sbjct: 124 MGLCFIARMRREQPPGLRMVSRMLVVTGSSDTAAQYINYMNVFFTAQKQQVLLDVCSLD- 182
Query: 185 QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFC 244
++ + LQQ ITGG++ K L+GL QYLL +F + R L LP VD+RA+CFC
Sbjct: 183 KHLSLLQQGCDITGGLYLKVPSLEGLLQYLLWVFLPEASERRELVLPGRGRVDYRAACFC 242
Query: 245 HKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
H+ + +GY+CSVCLS++CK C+TC +VF
Sbjct: 243 HRELLTIGYVCSVCLSVFCKFSPICTTCHTVF 274
>gi|195995769|ref|XP_002107753.1| hypothetical protein TRIADDRAFT_51576 [Trichoplax adhaerens]
gi|190588529|gb|EDV28551.1| hypothetical protein TRIADDRAFT_51576 [Trichoplax adhaerens]
Length = 276
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 153/276 (55%), Gaps = 32/276 (11%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
+L+++++DTNP W ++ + F++++ +++ ++N+ L ++ N + VIA+ N Y+Y
Sbjct: 9 NLLILVIDTNPLAWLPFAAEMDFTRYIENIVVYINSHLMMDHRNSIAVIASHVNKSCYLY 68
Query: 72 -----------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL 120
+S+ST N + +GR L +N + +E +A +
Sbjct: 69 SPHMDNWIKNTNSNSTVNIA-KDGRHEEL---------SHINYIIETRVKELVQEMATAD 118
Query: 121 LSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
+ + Q + G + RIL ++ +PD QY+ IMN IF+AQ+ VPID+C
Sbjct: 119 IHNHVD------QDLRNKG--QAKSRILVIKCTPDTSFQYLPIMNCIFTAQKYNVPIDAC 170
Query: 181 YLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRA 240
+ ++S FLQQA ITGG++ K Q GL QYLLT F + R L LP VD+RA
Sbjct: 171 VI-EKDSGFLQQACDITGGIYLKLQSPSGLLQYLLTAFLPNQSMRETLILPPKAKVDYRA 229
Query: 241 SCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+CFCH+ I++GYICSVCLSI CK + C TC + F
Sbjct: 230 ACFCHRELIEIGYICSVCLSISCKFVPVCPTCQTHF 265
>gi|351698565|gb|EHB01484.1| General transcription factor IIH subunit 3, partial [Heterocephalus
glaber]
Length = 315
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 153/299 (51%), Gaps = 39/299 (13%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLN---------------------AI 48
D+++L+V+++DTNP +W SL SQ H + A+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQSLKESQCWDHKCVLPHPAVIGGSHRFCCGHSPTRGGGAL 64
Query: 49 LTLNQLNQVVVIATGYNS--CDYVYDSSSTGNQ----SVGNGRMPSLCA---TLLQNLEE 99
L L Q + G N D+ D S +G+ L A + + +++
Sbjct: 65 FFLVHLQQCRFLYPGKNGRLGDFFGDPGSPSPDYNPSGSKDGKYELLTAANDVIAEEIKD 124
Query: 100 FMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGP 157
M + G+ +LL+GSL+ ALCYI R+ + + + RIL ++ + D
Sbjct: 125 LMTTSDIKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSA 178
Query: 158 EQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 217
QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +
Sbjct: 179 LQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMASLLQYLLWV 237
Query: 218 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
F D R L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 238 FLPDQDQRAQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 296
>gi|449476600|ref|XP_002189370.2| PREDICTED: general transcription factor IIH subunit 3 isoform 1
[Taeniopygia guttata]
gi|449476604|ref|XP_004176463.1| PREDICTED: general transcription factor IIH subunit 3 isoform 2
[Taeniopygia guttata]
Length = 267
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/251 (35%), Positives = 143/251 (56%), Gaps = 27/251 (10%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVY------------------DSSSTGNQSVGNGRMP 87
N+ L +N+ N++ VIA+ ++Y +S+ +G++ +
Sbjct: 5 NSHLLMNRTNKLAVIASHTQESRFLYPGKRWAAADPFGEGGPSMESNCSGSKDGKYELLT 64
Query: 88 SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--P 145
++ + + +++ M K + G+Q +LL+GSL+ ALCYI ++ + ++ +
Sbjct: 65 AINDAIAEEIKDLMTKTDMKGQQTE------TLLAGSLAKALCYINKMGKDLKVNQEIKS 118
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 205
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K
Sbjct: 119 RILVIKAAEDSALQYMNFMNVIFAAQKQSILIDACVLDS-DSGLLQQACDITGGIYLKVP 177
Query: 206 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKH 265
+ L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C
Sbjct: 178 HMPSLLQYLLWVFLPDQEQRSQLVLPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNF 237
Query: 266 LKKCSTCGSVF 276
CSTC + F
Sbjct: 238 SPICSTCETAF 248
>gi|353240140|emb|CCA72023.1| related to TFIIH basal transcription factor complex p34 subunit
[Piriformospora indica DSM 11827]
Length = 355
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 95/284 (33%), Positives = 147/284 (51%), Gaps = 21/284 (7%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS--------LSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
++ S + V+LD +P W SS LS + FL + FLNA L N + V
Sbjct: 2 ENASHLSVILDLSPSQWYQSSQTSGDKHPLSLAHFLPQLFVFLNAHLASQHENTLTVFGA 61
Query: 63 GYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLS 122
+Y S+ T Q+ + T+ + + +N++ + ++ E IA L
Sbjct: 62 FPGKSSMLYSSNETYIQADADSNTFQPFKTMNSVIAQRLNEELESLPEDAEAPIA---LV 118
Query: 123 GSLSMALCYI-QRVFRSGLLH---------PQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
G+L+ +LC I +R S L+ P PR+L + SPD Y+ IMN+IF AQ+
Sbjct: 119 GALTKSLCTINRRSHPSDTLNATSPNPSKLPTPRLLVISVSPDLSASYIPIMNSIFCAQK 178
Query: 173 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 232
+ ID C + ++ FLQQA+++TGG + + D + QYL+T F + R + +P
Sbjct: 179 LKLSIDVCKIFGPDNVFLQQAAHLTGGSYISIDRRDSILQYLMTTFLSPPAVRRLMAVPT 238
Query: 233 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+D RA+CFCHK +D+G+ICS+CLSI+CK CSTC F
Sbjct: 239 EDRIDLRAACFCHKQIVDIGFICSICLSIFCKPTPVCSTCRVKF 282
>gi|195118052|ref|XP_002003554.1| GI21952 [Drosophila mojavensis]
gi|193914129|gb|EDW12996.1| GI21952 [Drosophila mojavensis]
Length = 299
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/276 (36%), Positives = 148/276 (53%), Gaps = 23/276 (8%)
Query: 13 VSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
+ L+ ++LDTNP + + +Q L V+AF NA L N++ V++ + + +++
Sbjct: 16 IDLLAIVLDTNPSQLIVRQNPQNLTQILEAVIAFGNAHLMQKAQNKLAVLSCSHYTTEFL 75
Query: 71 YDSSSTGNQSVGNGRMPSLCATLLQNLEEF----MNKDEQLGK---QEPEGRIAC-SLLS 122
+ GR L + E F +QLG P C SLL+
Sbjct: 76 FPLP---------GRQVEL-RQIDAQYEAFSLVEKTVKQQLGSILMNAPRLSAPCESLLA 125
Query: 123 GSLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
GS+SMALCYI R+ R+ + RIL + GS + QY+ MN F+AQ+ + +D+C
Sbjct: 126 GSMSMALCYISRLQRNVPAGVKMHSRILVITGSNECASQYMTFMNVFFTAQKLGIVVDTC 185
Query: 181 YLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRA 240
L + + LQQ IT G K QLDGL QYLL +F R+ L LP VD+RA
Sbjct: 186 ALD-KTLSLLQQGCDITNGQFLKVNQLDGLLQYLLWVFLPSPQMRHKLVLPPTPKVDYRA 244
Query: 241 SCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
SCFCH+ ID+GY+CSVCLS++CK+ C+TC ++F
Sbjct: 245 SCFCHRELIDIGYVCSVCLSVFCKYSPICTTCHTIF 280
>gi|452838611|gb|EME40551.1| hypothetical protein DOTSEDRAFT_136966 [Dothistroma septosporum
NZE10]
Length = 379
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 112/333 (33%), Positives = 162/333 (48%), Gaps = 77/333 (23%)
Query: 10 SDDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
S+ SL+ ++LDTNP W+ SL S+ + +L F+NA L ++ N+V VIA+
Sbjct: 16 SEPPSLLTIILDTNPHAWALHEGSLPLSKAVASLLVFINAHLAIHYGNKVAVIASHAERA 75
Query: 68 DYVY--------DSSSTGNQSVGNG---------RMPS----------LCATLLQNLEEF 100
+++Y SS+T + +GNG R P + L NL +
Sbjct: 76 EFLYPAPATAKPHSSATDDVDMGNGDALVNGGPVRPPDDANKYRPFAHIEHALTHNLRDM 135
Query: 101 MNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQ--------------------------- 133
M++ P ++L+G+L+MAL YI
Sbjct: 136 MDRTSPAALSTPS-----TMLAGALTMALTYISKQSAALPTANSSAQFNYSDPSAVAGGS 190
Query: 134 -------RVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 186
R GL + RIL L S D +QY++IMNAIF+ QR VPID L A +
Sbjct: 191 DLTADGSRKKHHGL---RSRILILSVSGDLADQYISIMNAIFACQRMSVPIDILKL-AGD 246
Query: 187 SAFLQQASYITGGVH--HKPQQLDGLFQYLLTIFGTDLHSRNFLQLP-KPVGVDFRASCF 243
+ FLQQA+ TGGV+ + G QYL+ + D +R L +P + GVDFRA+CF
Sbjct: 247 TVFLQQAADATGGVYVALDEKTRAGFLQYLMFAYLPDQTARAHLIMPGEGEGVDFRAACF 306
Query: 244 CHKNTIDMGYICSVCLSIYCK--HLKKCSTCGS 274
CH+ +D GY+CS+CLSI+C+ H C TCGS
Sbjct: 307 CHRKVVDTGYVCSICLSIFCEPLHDGTCLTCGS 339
>gi|297693367|ref|XP_002823992.1| PREDICTED: general transcription factor IIH subunit 3 [Pongo
abelii]
Length = 318
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/286 (32%), Positives = 153/286 (53%), Gaps = 26/286 (9%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQ--------FLTH---VLAFLNAILTLNQLNQVV 58
D+++L+V+++D NP +W +L SQ TH + + + ++ +
Sbjct: 21 EDELNLLVIVVDANPIWWGKQALKESQECMCTPLQHFTHNNPPPSVFPPLFRKHWNHRFL 80
Query: 59 VIATGYNSCDYVYDSSS------TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEP 112
D+ D + +G++ + S +++ +++ M K + G+
Sbjct: 81 YPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDIKGQHTE 140
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSA 170
+LL+GSL+ ALCYI R+ + + RIL ++ + D QY+ MN IF+A
Sbjct: 141 ------TLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAA 194
Query: 171 QRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQL 230
Q+ + ID+C L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L L
Sbjct: 195 QKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLTL 253
Query: 231 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
P PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 254 PPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 299
>gi|392593946|gb|EIW83271.1| transcription factor Tfb4 [Coniophora puteana RWD-64-598 SS2]
Length = 327
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 146/287 (50%), Gaps = 27/287 (9%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS-------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
+ S + V++D +P W S+ LS FL+ +LAFLN + N + V
Sbjct: 2 EKASHLSVIVDLSPTQWHLSAQPSNPYPLSIQSFLSQLLAFLNTHVAAKHENTLAVYGAL 61
Query: 64 YNSCDYVYDSSSTGNQ----SVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
+Y SS + S N P + AT++ + + + ++ P
Sbjct: 62 PGKSVLLYSSSDPAPENAPASDANAFTPFKLVDATVVDRIMQEFEAVSEAEEEAP----- 116
Query: 118 CSLLSGSLSMALCYIQRVFRSGLLH--------PQPRILCLQGSPDGPEQYVAIMNAIFS 169
CSL+S L+ ALCYI R+ P PRIL L SPD Y+ IMN IFS
Sbjct: 117 CSLVSA-LAKALCYINRITHPSTSAGPEDPNELPDPRILILSVSPDLSSSYIPIMNCIFS 175
Query: 170 AQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQ 229
AQ+ V ID C + + FLQQA+++T G + ++ D L QYL+ F R L
Sbjct: 176 AQKLKVTIDVCKVYGPETVFLQQAAHLTEGSYIHLERRDALLQYLVMSFLAPPSVRGVLA 235
Query: 230 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+P+ +DFRA+CFCHKN +D+G++CSVCLSI+C+ + CSTC + F
Sbjct: 236 VPRQERIDFRAACFCHKNIVDIGFVCSVCLSIFCQPVPVCSTCRTKF 282
>gi|169775241|ref|XP_001822088.1| transcription factor TFIIH complex subunit [Aspergillus oryzae
RIB40]
gi|83769951|dbj|BAE60086.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872974|gb|EIT82049.1| RNA polymerase II transcription initiation protein [Aspergillus
oryzae 3.042]
Length = 376
Score = 153 bits (387), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 104/322 (32%), Positives = 156/322 (48%), Gaps = 67/322 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
+L+ V+LDTNP W+ SL S+ + ++L FLNA L N N+V V+A+ ++Y
Sbjct: 20 ALLTVVLDTNPHAWALLEDSLPLSKAIANILVFLNAHLACNYANEVAVVASHSQKAAWLY 79
Query: 72 --------------------DSSSTGNQSVGNGRMPS------LCATLLQNLEEFMNKDE 105
SS+ N + G G++ + + NL E M
Sbjct: 80 PHENPATKISHDADGDVSMNGSSTNNNTTEGPGQVNKYRPFRIVEEQVTHNLRELM---- 135
Query: 106 QLGKQEPEGRIACS-LLSGSLSMALCYIQR-------------------------VFRSG 139
P+ + S +++G+L++AL +I R SG
Sbjct: 136 -ASTSGPDVKANNSTMMAGALTLALSHINRRSIAWAEAHGADTAAETSGGGPPSGGHASG 194
Query: 140 L-----LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQAS 194
L + I+ + G+ D QY+ IMN+IF+ QR +PID C L ++ FLQQAS
Sbjct: 195 TDTTEGLQSRILIVSVSGASDSAHQYIPIMNSIFACQRLHIPIDVCKLSG-DAVFLQQAS 253
Query: 195 YITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYI 254
T G++ + GL QYL+ F D SR L LP V VDFRA+CFCH+ +D+G++
Sbjct: 254 DATKGIYMSLTEPRGLLQYLMMAFLPDQRSRRHLVLPTRVDVDFRAACFCHRRVVDIGFV 313
Query: 255 CSVCLSIYCKHLKK--CSTCGS 274
CS+CLSI+C+ L C TCG+
Sbjct: 314 CSICLSIFCEPLDNGTCLTCGT 335
>gi|346472167|gb|AEO35928.1| hypothetical protein [Amblyomma maculatum]
Length = 293
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/275 (39%), Positives = 154/275 (56%), Gaps = 16/275 (5%)
Query: 11 DDVSLVVVLLDTNPF--FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D+ SL+V ++DTNP + S+FL F N+ L LN N++ VIA +
Sbjct: 5 DEGSLLVTIIDTNPCASLLQNEEGIVSRFLDAATVFCNSHLMLNPCNKLAVIACHSHKSM 64
Query: 69 YVY---DSSSTGNQSV-GNGRMPSLCATLL-QNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
++Y S+ N SV G + S + + ++E + DE E ++ +LL+G
Sbjct: 65 FLYPRAQPSAQENYSVDGQYELFSEVKNAVKEGVKELVLSDEN------ESLVSETLLTG 118
Query: 124 SLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
LS+ALC+I RV + +G RIL L S + QY+ MN F+AQ+ V ID+C
Sbjct: 119 GLSLALCHINRVEKETAGQKKIASRILVLSASGESASQYLNFMNVFFTAQKKNVIIDACV 178
Query: 182 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 241
L ++S LQQ ITGG + K GL QYLL +F D SR++L P PV VD+RA+
Sbjct: 179 L-EKDSGLLQQGCDITGGKYMKVPNHAGLLQYLLWLFLPDKASRDYLVFPPPVHVDYRAA 237
Query: 242 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
CFCH+N I++GY+CSVCLSI+C CSTC + F
Sbjct: 238 CFCHRNLIEIGYVCSVCLSIFCAFSPICSTCQTAF 272
>gi|281343811|gb|EFB19395.1| hypothetical protein PANDA_000941 [Ailuropoda melanoleuca]
Length = 278
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 147/266 (55%), Gaps = 28/266 (10%)
Query: 32 LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSS---------TGNQSV- 81
+ S+ + V+ N+ L +N+ N++ VIA+ ++Y + GN S
Sbjct: 2 FTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPSSE 61
Query: 82 ------GNGRMPSLCAT---LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYI 132
+G+ A + + +++ M K E G+ +LL+GSL+ ALCYI
Sbjct: 62 FSPSGSKDGKYELFTAANEIIAEEIKDLMTKSEIKGQHTE------TLLAGSLAKALCYI 115
Query: 133 QRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFL 190
R+ + + + RIL ++ + D QY+ +MN IF+AQ+ + ID+C L + +S L
Sbjct: 116 HRMNKEVKDNQEMKSRILVIKAAEDSALQYMNLMNVIFAAQKQNILIDACVLDS-DSGLL 174
Query: 191 QQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTID 250
QQA ITGG++ K Q+ L QYLL +F D R+ L LP P+ VD+RA+CFCH+N I+
Sbjct: 175 QQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPIHVDYRAACFCHRNLIE 234
Query: 251 MGYICSVCLSIYCKHLKKCSTCGSVF 276
+GY+CSVCLSI+C C+TC + F
Sbjct: 235 IGYVCSVCLSIFCNFSPICTTCETAF 260
>gi|238496129|ref|XP_002379300.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
flavus NRRL3357]
gi|220694180|gb|EED50524.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
flavus NRRL3357]
Length = 367
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 104/322 (32%), Positives = 156/322 (48%), Gaps = 67/322 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
+L+ V+LDTNP W+ SL S+ + ++L FLNA L N N+V V+A+ ++Y
Sbjct: 11 ALLTVVLDTNPHAWALLEDSLPLSKAIANILVFLNAHLACNYANEVAVVASHSQKAAWLY 70
Query: 72 --------------------DSSSTGNQSVGNGRMPS------LCATLLQNLEEFMNKDE 105
SS+ N + G G++ + + NL E M
Sbjct: 71 PHENPATKISHDADGDVSMNGSSTNNNTTEGPGQVNKYRPFRIVEEQVTHNLRELM---- 126
Query: 106 QLGKQEPEGRIACS-LLSGSLSMALCYIQR-------------------------VFRSG 139
P+ + S +++G+L++AL +I R SG
Sbjct: 127 -ASTSGPDVKANNSTMMAGALTLALSHINRRSIAWAEAHGADTAAETSGGGPPSGGHASG 185
Query: 140 L-----LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQAS 194
L + I+ + G+ D QY+ IMN+IF+ QR +PID C L ++ FLQQAS
Sbjct: 186 TDTTEGLQSRILIVSVSGASDSAHQYIPIMNSIFACQRLHIPIDVCKLSG-DAVFLQQAS 244
Query: 195 YITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYI 254
T G++ + GL QYL+ F D SR L LP V VDFRA+CFCH+ +D+G++
Sbjct: 245 DATKGIYMSLTEPRGLLQYLMMAFLPDQRSRRHLVLPTRVDVDFRAACFCHRRVVDIGFV 304
Query: 255 CSVCLSIYCKHLKK--CSTCGS 274
CS+CLSI+C+ L C TCG+
Sbjct: 305 CSICLSIFCEPLDNGTCLTCGT 326
>gi|429851889|gb|ELA27048.1| transcription factor tfiih subunit [Colletotrichum gloeosporioides
Nara gc5]
Length = 362
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 146/300 (48%), Gaps = 40/300 (13%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W++ L S+ + +L F+NA L + NQV +IA+ N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAALNDVLPLSKAIASILVFVNAHLAFSNANQVAIIASHSNRAVWLY 79
Query: 72 DSSSTGNQSVGNGR----------MPSLCATLLQNLEEFMNKDE-------QLGKQEPEG 114
+ + NG P+ + +F ++ ++ Q E
Sbjct: 80 PTKPEPKAASTNGASEDVDMADAFAPTPNKSNANKYPQFAQIEKAVLGAIREVINQTTEA 139
Query: 115 RIACSL--LSGSLSMALCYIQ----------------RVFRSGLLHPQPRILCLQGSPDG 156
++C+ LSG+L++AL YI R S L RI L S
Sbjct: 140 DLSCTTTQLSGALTLALSYINKASMALNETNKTPEATRATSSALTRLHARIFILSVSDSE 199
Query: 157 PEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLT 216
P QY+ MNA+F+A S +PID+ L ++ FLQQASYIT G + GL YL+
Sbjct: 200 PVQYIPTMNAVFAAAHSQIPIDTLALSG-DATFLQQASYITDGTFMQAASPRGLLSYLMF 258
Query: 217 IFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTCGS 274
+ D +R+ L P VDFRA+CFCH +D G++CS+CLSI+C +C TCG+
Sbjct: 259 AYSADAEARSSLIPPTHHTVDFRAACFCHGRVVDTGFVCSICLSIFCDVPENSECLTCGT 318
>gi|302759787|ref|XP_002963316.1| hypothetical protein SELMODRAFT_438480 [Selaginella moellendorffii]
gi|300168584|gb|EFJ35187.1| hypothetical protein SELMODRAFT_438480 [Selaginella moellendorffii]
Length = 916
Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats.
Identities = 85/175 (48%), Positives = 115/175 (65%), Gaps = 11/175 (6%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
MA AP DD SLVVVLLDT+ FW++ S S L VL+FLN++ +N +N +V+I
Sbjct: 706 MAGAPP---PDDSSLVVVLLDTSLHFWNAVVRS-SSGLQQVLSFLNSLALMNHMNHLVII 761
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSL 120
A+G NSC+++YDS + ++ N + S ++ L +F+++D Q P + SL
Sbjct: 762 ASGCNSCEFLYDSLDSDERAGANHQTAS--EKIVHKLNDFVSRD---ATQPP--KFQPSL 814
Query: 121 LSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
LS SLSMALCYIQR + + +PR+LCLQ SPD P QY+AIMNAIFSAQRSMV
Sbjct: 815 LSASLSMALCYIQRALKEKIGPSKPRMLCLQASPDAPHQYIAIMNAIFSAQRSMV 869
>gi|115387571|ref|XP_001211291.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195375|gb|EAU37075.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 380
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/323 (31%), Positives = 153/323 (47%), Gaps = 66/323 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+ SL S + ++L FLNA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTVILDTNPHAWAVLEPSLPLSTAIANILVFLNAHLACNYANEVAVVASHSQTATWLY 79
Query: 72 DSSSTGNQSVG-----------NGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS- 119
+ + ++ NG P A+ + F +EQ+ + E A S
Sbjct: 80 PRETRHDTTIASGTDRDGDIAMNGSAP---ASQVNKYRPFRIVEEQVTQHLRELMEATSG 136
Query: 120 ---------LLSGSLSMALCYIQR------------------------------------ 134
+++G+L++AL +I R
Sbjct: 137 ADVQATTSTMMAGALTLALSHINRRSLAWSEAHGADTAGDGAGASAGGGGGGGSGAGGAG 196
Query: 135 -VFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQA 193
+ L + I+ + GS D QY+ +MN IF+ QR +PID C L ++ FLQQA
Sbjct: 197 RAGGAEGLQSRILIVSVSGSSDSAHQYIPMMNGIFACQRLHIPIDVCKLSG-DAVFLQQA 255
Query: 194 SYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGY 253
S T GV + GL QYL+ F D SR L LP V VDFRA+CFCH+ +D+G+
Sbjct: 256 SDATKGVFMSLAEPRGLLQYLMMAFLPDQRSRKHLVLPTRVDVDFRAACFCHRRVVDVGF 315
Query: 254 ICSVCLSIYCKHLKK--CSTCGS 274
+CS+CLSI+C+ + C TCG+
Sbjct: 316 VCSICLSIFCEPPENGDCLTCGT 338
>gi|332840758|ref|XP_003314057.1| PREDICTED: general transcription factor IIH subunit 3 [Pan
troglodytes]
gi|397481836|ref|XP_003812143.1| PREDICTED: general transcription factor IIH subunit 3 isoform 2
[Pan paniscus]
Length = 267
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 142/245 (57%), Gaps = 15/245 (6%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQ 95
N+ L +N+ N++ VIA+ ++Y + G+ G +P + LL
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNLPEFNPSGSKDGKYELLT 64
Query: 96 NLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS--GLLHPQPRILCLQ 151
+ E + ++ + + K + +G+ +LL+GSL+ ALCYI R+ + + RIL ++
Sbjct: 65 SANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIK 124
Query: 152 GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLF 211
+ D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L
Sbjct: 125 AAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLL 183
Query: 212 QYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCST 271
QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+T
Sbjct: 184 QYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTT 243
Query: 272 CGSVF 276
C + F
Sbjct: 244 CETAF 248
>gi|431912136|gb|ELK14274.1| General transcription factor IIH subunit 3 [Pteropus alecto]
Length = 292
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 150/285 (52%), Gaps = 40/285 (14%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++DTNP +W +L SQF + V+ N+ L ++ N++ VIA+
Sbjct: 5 EDELNLLVIIVDTNPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMDHSNKLAVIASHI 64
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
++Y NGR+ L EF + GK E LL+ +
Sbjct: 65 QESRFLYPGK--------NGRLGDLFGDPSNPPSEFNPSGSKDGKYE--------LLTAA 108
Query: 125 LSMALCYIQRVFRSG---------LLH--------PQPRILCLQGSPDGPEQYVAIMNAI 167
+ + I+ + +G + H P P + ++ + D QY+ MN I
Sbjct: 109 NEVIVEEIKDLMTNGPNPVADFVPVCHSQGSSFSSPHPGQV-IKAAEDSALQYMNFMNVI 167
Query: 168 FSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF 227
F+AQ+ + ID+C LG+ +S LQQA ITGG++ K Q+ L QYLL +F D R+
Sbjct: 168 FAAQKQNILIDACVLGS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQ 226
Query: 228 LQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTC 272
L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC
Sbjct: 227 LILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTC 271
>gi|350630603|gb|EHA18975.1| hypothetical protein ASPNIDRAFT_42792 [Aspergillus niger ATCC 1015]
Length = 380
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/320 (32%), Positives = 157/320 (49%), Gaps = 60/320 (18%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ + SL S + ++L F+NA L N N+V V+++ + ++Y
Sbjct: 20 SLLTIILDTNPHAWALLNPSLPLSTAIANILVFINAHLACNYANEVAVVSSHTSQATWLY 79
Query: 72 -------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ--------LGKQ 110
+ S G+ S+ + + P T + F +EQ + +
Sbjct: 80 PVEKAATTTTAANNLDSDGDISMRSQQPPPSTHTNVNKYRPFRIVEEQVSTHLHNLMSQT 139
Query: 111 EPEG--RIACSLLSGSLSMALCYIQR------------VFRSGLLHP------------- 143
PE ++++G+L++AL +I R + + P
Sbjct: 140 TPETLQSTTSTMMAGALTLALSHINRRTLAWNEAHGGDIDTTNPNDPSSSSSSSHNTKGT 199
Query: 144 -----QPRILCLQ--GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYI 196
Q RIL L S QY+ IMNAIF+ QR +PID C + ++ FLQQAS
Sbjct: 200 AESTLQSRILILSVSSSTGSAHQYIPIMNAIFACQRLHIPIDVCKVSG-DAVFLQQASDA 258
Query: 197 TGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICS 256
T GV+ + GL QYL+ F D SR L LP V VDFRA+CFCH+ +D+G++CS
Sbjct: 259 TKGVYMALDEPKGLLQYLMMAFLPDQRSRRHLVLPTRVDVDFRAACFCHRRVVDVGFVCS 318
Query: 257 VCLSIYCKHLKK--CSTCGS 274
+CLSI+C+ L C TCGS
Sbjct: 319 ICLSIFCEPLGDGVCLTCGS 338
>gi|119618833|gb|EAW98427.1| general transcription factor IIH, polypeptide 3, 34kDa, isoform
CRA_b [Homo sapiens]
Length = 274
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/258 (34%), Positives = 145/258 (56%), Gaps = 27/258 (10%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVY------------------DSSSTGNQSVGNGRMP 87
N+ L +N+ N++ VIA+ ++Y + + +G++ +
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLT 64
Query: 88 SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--P 145
S +++ +++ M K + G+ +LL+GSL+ ALCYI R+ + + +
Sbjct: 65 SANEVIVEEIKDLMTKSDIKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKS 118
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 205
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K
Sbjct: 119 RILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVP 177
Query: 206 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKH 265
Q+ L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C
Sbjct: 178 QMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNF 237
Query: 266 LKKCSTCGSVFGQAQTQS 283
C+TC + + +T+S
Sbjct: 238 SPICTTCDAESQEKETES 255
>gi|145254849|ref|XP_001398778.1| transcription factor TFIIH complex subunit [Aspergillus niger CBS
513.88]
gi|134084362|emb|CAK48702.1| unnamed protein product [Aspergillus niger]
Length = 379
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 156/319 (48%), Gaps = 59/319 (18%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ + SL S + ++L F+NA L N N+V V+++ + ++Y
Sbjct: 20 SLLTIILDTNPHAWALLNPSLPLSTAIANILVFINAHLACNYANEVAVVSSHTSQATWLY 79
Query: 72 DSS------------STGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ--------LGKQE 111
S G+ S+ + + P T + F +EQ + +
Sbjct: 80 PVEKATTTTTANNLDSDGDISMRSQQPPPSTHTNINKYRPFRIVEEQVSTHLHNLMSQTT 139
Query: 112 PEG--RIACSLLSGSLSMALCYIQR------------VFRSGLLHP-------------- 143
PE ++++G+L++AL +I R + + P
Sbjct: 140 PETLQSTTSTMMAGALTLALSHINRRTLAWNEAHGGDIDTTNPNDPSSTSSSSHNTKGTA 199
Query: 144 ----QPRILCLQ--GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYIT 197
Q RIL L S QY+ IMNAIF+ QR +PID C + ++ FLQQAS T
Sbjct: 200 ESTLQSRILILSVSSSTGSAHQYIPIMNAIFACQRLHIPIDVCKVSG-DAVFLQQASDAT 258
Query: 198 GGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSV 257
GV+ + GL QYL+ F D SR L LP V VDFRA+CFCH+ +D+G++CS+
Sbjct: 259 KGVYMALDEPKGLLQYLMMAFLPDQRSRRHLVLPTRVDVDFRAACFCHRRVVDVGFVCSI 318
Query: 258 CLSIYCKHLKK--CSTCGS 274
CLSI+C+ L C TCGS
Sbjct: 319 CLSIFCEPLGDGVCLTCGS 337
>gi|406863689|gb|EKD16736.1| hypothetical protein MBM_05205 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 357
Score = 151 bits (381), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 157/303 (51%), Gaps = 48/303 (15%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
+L+VV++DTNP W+ S +L S+ + ++L F+NA L +N NQV ++A+ + ++Y
Sbjct: 20 ALLVVVIDTNPHAWALLSPTLPLSKAIANILVFINAHLAVNNANQVAIVASHCHRAAWLY 79
Query: 72 ---------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
D +++ N N P L++++ +N +L E +
Sbjct: 80 PHPASTSSSEDVEMSDDAASSNIDNPNKYRPF---ALVEDI--LLNSLRELIATTTESDV 134
Query: 117 ACSL---LSGSLSMALCYIQRVFR--SGL------------------LHPQPRILCLQGS 153
A + ++G+L++AL YI + + SG+ L Q RIL + S
Sbjct: 135 ATTTSTQMAGALTLALSYIHKATQQFSGIDTESKPATAPSTENADTILGLQSRILVVSVS 194
Query: 154 PDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQY 213
D QY+ IMN F+AQR +PID L A ++ FLQQAS T GV+ + + GL QY
Sbjct: 195 GDLAHQYIPIMNTTFAAQRLRIPIDILKL-AGDTVFLQQASDATKGVYMQLRNPQGLLQY 253
Query: 214 LLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--KHLKKCST 271
L+ F D +R L P VDFRA+CFCH+ +D+GY+CS+CLSI+C C T
Sbjct: 254 LMMAFLPDQVARKHLVPPTQEVVDFRAACFCHRKVVDIGYVCSICLSIFCVPPEGAVCLT 313
Query: 272 CGS 274
C +
Sbjct: 314 CSA 316
>gi|310794652|gb|EFQ30113.1| transcription factor tfb4 [Glomerella graminicola M1.001]
Length = 365
Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 148/307 (48%), Gaps = 52/307 (16%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W++ L S+ + ++L F+NA L + NQV + A+ N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAALNDVLPLSKAIANILVFVNAHLAFSNANQVAIFASHSNRAVWLY 79
Query: 72 DS------------------------SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL 107
S + T NQS N + P Q M+ +L
Sbjct: 80 PSKPEDAGANGAPYAEDVTMTDADFFAPTPNQSSAN-KFPQFA----QIEAAVMSSMRKL 134
Query: 108 GKQEPEGRIACSL--LSGSLSMALCYIQ----------------RVFRSGLLHPQPRILC 149
E +AC+ LSG+L++AL +I R S L + RI
Sbjct: 135 VDATTEADLACTTTQLSGALTLALAHINKTSLSLNETNKAPDVARSTSSALSRLRARIFV 194
Query: 150 LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDG 209
L S P QY++ MNA+F+A S +PID+ L ++ FLQQASYIT G + G
Sbjct: 195 LSVSDSEPVQYISTMNAVFAAAHSQIPIDTLALSG-DATFLQQASYITDGTFMQAASPRG 253
Query: 210 LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLK 267
L YL+ + D +R+ L P VDFRA+CFCH +D G++CS+CLSI+C
Sbjct: 254 LLSYLMFAYSADAEARSSLIPPTHHTVDFRAACFCHGRVVDTGFVCSICLSIFCDVPDGS 313
Query: 268 KCSTCGS 274
+C TCG+
Sbjct: 314 ECLTCGT 320
>gi|255953875|ref|XP_002567690.1| Pc21g06450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589401|emb|CAP95542.1| Pc21g06450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 374
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 105/320 (32%), Positives = 158/320 (49%), Gaps = 64/320 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W+ SL S+ + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLTIVIDTNPHAWAVLEDSLPLSKAIANILVFINAHLACNYANEVAVVASHSQKAAWLY 79
Query: 72 DSSST---------GNQSVGNGRMPSLCAT------------LLQNLEEFMNKDEQLGKQ 110
S S G+ ++ + T + +NL+E M D G
Sbjct: 80 PSHSEPQYRPADHDGDVTMNGTSDTTTPKTNKYRPFRIVEEQVTRNLKELM--DSTTG-D 136
Query: 111 EPEGRIACSLLSGSLSMALCYI-QRVFRSGLLHP-------------------------- 143
+ G ++ ++L+G+L++AL +I +R H
Sbjct: 137 DLRGNMS-TMLAGALTLALSHINRRTLAWAEEHGGANTEDAAADGNGGGTTSTNRYSASN 195
Query: 144 -----QPRILCLQ--GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYI 196
Q RIL + GS D QY+ +MN+IF+ QR +PID C L ++ FLQQAS
Sbjct: 196 EDERLQSRILVVSVSGSTDAAHQYIPVMNSIFACQRLSIPIDVCKLSG-DAVFLQQASDA 254
Query: 197 TGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICS 256
T GV+ + GL QYL+ F D SR L LP V VDFRA+CFCH+ +D+G++CS
Sbjct: 255 TKGVYMALAEPRGLLQYLMMAFLPDQRSRRHLVLPTRVDVDFRAACFCHRRVVDVGFVCS 314
Query: 257 VCLSIYCKHLK--KCSTCGS 274
+CLSI+C+ C TCGS
Sbjct: 315 ICLSIFCEPPPGGDCMTCGS 334
>gi|428673524|ref|NP_001258796.1| general transcription factor IIH subunit 3 isoform c [Homo sapiens]
gi|194389784|dbj|BAG60408.1| unnamed protein product [Homo sapiens]
Length = 267
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 142/245 (57%), Gaps = 15/245 (6%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQ 95
N+ L +N+ N++ VIA+ ++Y + G+ G P + LL
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLT 64
Query: 96 NLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQ 151
+ E + ++ + + K + +G+ +LL+GSL+ ALCYI R+ + + + RIL ++
Sbjct: 65 SANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIK 124
Query: 152 GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLF 211
+ D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L
Sbjct: 125 AAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLL 183
Query: 212 QYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCST 271
QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+T
Sbjct: 184 QYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTT 243
Query: 272 CGSVF 276
C + F
Sbjct: 244 CETAF 248
>gi|402888057|ref|XP_003907393.1| PREDICTED: general transcription factor IIH subunit 3 isoform 2
[Papio anubis]
gi|426374590|ref|XP_004054153.1| PREDICTED: general transcription factor IIH subunit 3 isoform 2
[Gorilla gorilla gorilla]
Length = 267
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 141/245 (57%), Gaps = 15/245 (6%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQ 95
N+ L +N+ N++ VIA+ ++Y + G+ G P + LL
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLT 64
Query: 96 NLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS--GLLHPQPRILCLQ 151
+ E + ++ + + K + +G+ +LL+GSL+ ALCYI R+ + + RIL ++
Sbjct: 65 SANEVIVEEIKDLMTKSDIKGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIK 124
Query: 152 GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLF 211
+ D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L
Sbjct: 125 AAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLL 183
Query: 212 QYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCST 271
QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+T
Sbjct: 184 QYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTT 243
Query: 272 CGSVF 276
C + F
Sbjct: 244 CETAF 248
>gi|70997489|ref|XP_753492.1| transcription factor TFIIH subunit Tfb4 [Aspergillus fumigatus
Af293]
gi|66851128|gb|EAL91454.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
fumigatus Af293]
gi|159126779|gb|EDP51895.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
fumigatus A1163]
Length = 387
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 153/325 (47%), Gaps = 65/325 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLTIVLDTNPHAWALLEDSLPLSTAIANILVFVNAHLACNYANEVAVVASHSQKATWLY 79
Query: 72 ----------DSSSTGNQSVGNGRMPSLCATL--------LQNLEEFMNKDEQLGKQEPE 113
+S TG G+ M A + F +EQ+ + E
Sbjct: 80 PCETKEDNGKSTSKTGRDEDGDVAMNGSGAGAGAGFAAAQVNKYRPFRIVEEQVTRNLRE 139
Query: 114 ----------GRIACSLLSGSLSMALCYIQR--------------------------VFR 137
++++G+L++AL +I R R
Sbjct: 140 LMDSTSGADVAATTSTMMAGALTLALSHINRRSIAWADAHGGTAAGPPGAVEAGSSGAGR 199
Query: 138 SGL------LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQ 191
+G L + I+ + GS D QY+ IMN IF+ QR +PID C L ++ FLQ
Sbjct: 200 AGADTGAEGLQSRILIISVSGSTDSAHQYIPIMNCIFACQRLHIPIDVCKLSG-DAVFLQ 258
Query: 192 QASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDM 251
QAS T GV+ + GL QYL+ F D SR L +P V VDFRA+CFCH+ +D+
Sbjct: 259 QASDATKGVYMSLSEPRGLLQYLMMAFLPDQRSRRHLVIPTRVDVDFRAACFCHRRVVDI 318
Query: 252 GYICSVCLSIYCKHLKK--CSTCGS 274
G++CS+CLSI+C+ + C TCG+
Sbjct: 319 GFVCSICLSIFCEPPENGDCLTCGT 343
>gi|119479015|ref|XP_001259536.1| transcription factor TFIIH subunit Tfb4, putative [Neosartorya
fischeri NRRL 181]
gi|119407690|gb|EAW17639.1| transcription factor TFIIH subunit Tfb4, putative [Neosartorya
fischeri NRRL 181]
Length = 385
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 153/325 (47%), Gaps = 65/325 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLTIVLDTNPHAWALLKDSLPLSTAIANILVFVNAHLACNYANEVAVVASHSQKATWLY 79
Query: 72 ----------DSSSTGNQSVGNGRMPSLCATL--------LQNLEEFMNKDEQLGKQEPE 113
+S TG G+ M A + F +EQ+ + E
Sbjct: 80 PRETKEDNGKSNSKTGRDEDGDVAMNGSGAGAGAGSAAAQVNKYRPFRIVEEQVTRNLRE 139
Query: 114 ----------GRIACSLLSGSLSMALCYIQR--------------------------VFR 137
++++G+L++AL +I R R
Sbjct: 140 LMDSTSGADVAATTSTMMAGALTLALSHINRRSIAWADAHGGTAAGPPGAVEAGSSGAGR 199
Query: 138 SGL------LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQ 191
+G L + I+ + GS D QY+ IMN IF+ QR +PID C L ++ FLQ
Sbjct: 200 AGTDTGAEGLQSRILIISVSGSTDSAHQYIPIMNCIFACQRLHIPIDVCKLSG-DAVFLQ 258
Query: 192 QASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDM 251
QAS T GV+ + GL QYL+ F D SR L +P V VDFRA+CFCH+ +D+
Sbjct: 259 QASDATKGVYMSLSEPRGLLQYLMMAFLPDQRSRRHLVIPTRVDVDFRAACFCHRRVVDI 318
Query: 252 GYICSVCLSIYCKHLKK--CSTCGS 274
G++CS+CLSI+C+ + C TCG+
Sbjct: 319 GFVCSICLSIFCEPPENGDCLTCGT 343
>gi|187608008|ref|NP_001120625.1| general transcription factor IIH, polypeptide 3, 34kDa [Xenopus
(Silurana) tropicalis]
gi|171846721|gb|AAI61775.1| gtf2h3 protein [Xenopus (Silurana) tropicalis]
Length = 200
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/183 (42%), Positives = 115/183 (62%), Gaps = 8/183 (4%)
Query: 96 NLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLL--HPQPRILCLQGS 153
++++ M K Q+ Q+ E ++L+GSL+ ALCYI ++ + + RIL ++ +
Sbjct: 5 DIKDLMTKTGQINGQQTE-----TVLAGSLAKALCYINKIAKDTKAGQEVKSRILVIKAA 59
Query: 154 PDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQY 213
D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q + L QY
Sbjct: 60 EDSALQYMNFMNVIFAAQKQSILIDACVLDS-DSGLLQQACDITGGIYLKLPQANSLLQY 118
Query: 214 LLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCG 273
LL +F D R+ L L PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC
Sbjct: 119 LLWVFLPDPDQRSHLNLLPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCE 178
Query: 274 SVF 276
+ F
Sbjct: 179 TAF 181
>gi|441630270|ref|XP_004089523.1| PREDICTED: general transcription factor IIH subunit 3 isoform 3
[Nomascus leucogenys]
Length = 267
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/245 (37%), Positives = 141/245 (57%), Gaps = 15/245 (6%)
Query: 46 NAILTLNQLNQVVVIATGYNSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQ 95
N+ L +N+ N++ VIA+ ++Y + G+ G P + LL
Sbjct: 5 NSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLT 64
Query: 96 NLEEFMNKD--EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS--GLLHPQPRILCLQ 151
+ E + ++ + + K + +G+ +LL+GSL+ ALCYI R+ + + RIL ++
Sbjct: 65 SANEVIVEEIKDLMTKGDIKGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIK 124
Query: 152 GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLF 211
+ D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+ L
Sbjct: 125 AAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPSLL 183
Query: 212 QYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCST 271
QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+T
Sbjct: 184 QYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTT 243
Query: 272 CGSVF 276
C + F
Sbjct: 244 CETAF 248
>gi|342873217|gb|EGU75428.1| hypothetical protein FOXB_14053 [Fusarium oxysporum Fo5176]
Length = 358
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 153/303 (50%), Gaps = 49/303 (16%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+S + L S+ + ++L F+NA L + NQV +IA + +++Y
Sbjct: 20 SLLTVVLDTNPRAWASLNNVLPLSRAIANILVFVNAHLAFSNANQVALIAAHVDRAEWLY 79
Query: 72 -----------------DSSSTGNQSVGNGRMPSLC---ATLLQNLEEFMNKDEQLGKQE 111
D+S T Q+ N + P A +L + + M++ +E
Sbjct: 80 PTPPKPSRDASGDVAMNDASQTQTQTSAN-KFPQFAQIEAAVLAAIRKLMDQ-----TKE 133
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRS-------------GLLHPQP-----RILCLQGS 153
+ + +SG+L++ALC+I + ++ G + P RIL + S
Sbjct: 134 EDLSATTTQISGALTLALCHINKAAQALCAPTANLEDSHKGSSNTAPPTVRGRILVISVS 193
Query: 154 PDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQY 213
P QY+ MNA+F+A + V ID+ L + + FLQQA Y TGG + GL Y
Sbjct: 194 DSEPSQYIPTMNAVFAAGHTQVAIDTLSLTGEPT-FLQQACYNTGGTYLAATHPQGLLNY 252
Query: 214 LLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK--KCST 271
L+ D +R L P VDFRA+CFCH +D G++CS+CLSI+C+ + +C T
Sbjct: 253 LMFGLIADTEAREALIAPTHDTVDFRAACFCHGRVVDTGFVCSICLSIFCETPENSECFT 312
Query: 272 CGS 274
CG+
Sbjct: 313 CGT 315
>gi|21410252|gb|AAH31030.1| Unknown (protein for IMAGE:4724313), partial [Homo sapiens]
Length = 235
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/187 (41%), Positives = 117/187 (62%), Gaps = 9/187 (4%)
Query: 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRILC 149
+++ +++ M K + G+ +LL+GSL+ ALCYI R+ + + + RIL
Sbjct: 37 VIVEEIKDLMTKSDIKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILV 90
Query: 150 LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDG 209
++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+
Sbjct: 91 IKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPS 149
Query: 210 LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKC 269
L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C C
Sbjct: 150 LLQYLLWVFLPDQDQRSRLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPIC 209
Query: 270 STCGSVF 276
+TC + F
Sbjct: 210 TTCETAF 216
>gi|384494657|gb|EIE85148.1| hypothetical protein RO3G_09858 [Rhizopus delemar RA 99-880]
Length = 268
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/286 (34%), Positives = 144/286 (50%), Gaps = 59/286 (20%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
DD +L+V+++DTNPF W+ S+ LS L +L ++NA L L N + VIA+
Sbjct: 8 EDDSNLLVIIIDTNPFAWNDSAKAELPLSLDDALNQILIYINAHLALKHNNNIAVIASHV 67
Query: 65 NSCDYVY---DSSSTGNQSVGNGRMPSL-------CATLLQNLEEFMNKDEQLGKQEPEG 114
++Y D+ + N + ++ ++ NL+ ++ + + G
Sbjct: 68 GHSQFLYPLPDNQEPAEGANFNKKDANVYPYFQFVTDQVVSNLQRLLSNTDTSFLTKDMG 127
Query: 115 RIACSLLSGSLSMALCYIQRVFR---SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ 171
S ++G+LSMALCYI R+ + G + +PRIL L SPD QY+ +MN IFSAQ
Sbjct: 128 PTT-STITGALSMALCYINRITKLDDEGYI--KPRILVLSVSPDSAFQYIPLMNCIFSAQ 184
Query: 172 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLP 231
++ CY Q+ AFL D +SRNFL LP
Sbjct: 185 KA------CY---QHMAFL-----------------------------PDRYSRNFLNLP 206
Query: 232 KPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFG 277
VDFRA+CFCHK +D+G++CSVCLSI+CK CSTC + F
Sbjct: 207 TQDQVDFRAACFCHKQIVDIGFVCSVCLSIFCKWSPVCSTCKTKFA 252
>gi|358389021|gb|EHK26614.1| hypothetical protein TRIVIDRAFT_69532 [Trichoderma virens Gv29-8]
Length = 363
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 101/307 (32%), Positives = 153/307 (49%), Gaps = 45/307 (14%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W++ SSLS +Q ++++L F+NA L + NQV VIA N ++Y
Sbjct: 20 SLLSIVLDTNPRAWAALDSSLSLAQAISNILVFVNAHLAFSNTNQVAVIAAHVNRAVWLY 79
Query: 72 ------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE-----------PEG 114
+++T + G+ +M + A + NK Q + E E
Sbjct: 80 PAPQNPSATTTTKDNSGDVQMQDVSAET-NSSSASANKYPQFAQIESSVFSSIQTLMAET 138
Query: 115 RI-----ACSLLSGSLSMALCYIQRVFRS--------------GLLHPQP---RILCLQG 152
+ + LSG+L++ALC I + +S P P RI+ +
Sbjct: 139 TVQDLDQVTTQLSGALTLALCRINKTAQSLSSSDTTISNAAPVNSTAPPPVKGRIVVISV 198
Query: 153 SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQ 212
S P QY+ MNA+F+A + V ID+ L A +S FLQQA + T G+ K GL
Sbjct: 199 SDSEPSQYIPTMNAVFAAAHNQVAIDTIAL-AGDSTFLQQACFNTNGIFLKASNPQGLLT 257
Query: 213 YLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK--KCS 270
YL+ D +R L P VDFR +CFCH +D G++CSVCLSI+C+ + +C
Sbjct: 258 YLMFGLIPDTEARGSLITPTHDTVDFRTACFCHGKVVDTGFVCSVCLSIFCEPPENAECL 317
Query: 271 TCGSVFG 277
TCG++
Sbjct: 318 TCGTILA 324
>gi|321470747|gb|EFX81722.1| hypothetical protein DAPPUDRAFT_224195 [Daphnia pulex]
Length = 301
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 93/279 (33%), Positives = 143/279 (51%), Gaps = 19/279 (6%)
Query: 12 DVSLVVVLLDTNPF-------FWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+ LV +++D P + S ++ ++ F NA L N++ VIA
Sbjct: 9 ETPLVAIVIDATPAKKFASQAIIDNGSTMMNRIFDALIGFGNAHLMQGSHNKLAVIACNS 68
Query: 65 NSCDYVY-----DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
S ++Y DS S N+ + + + L E + KD + + + S
Sbjct: 69 KSTKFLYPSENGDSKSYHNRPGQYDMFAKVDSDIRHGLSELILKDSI----DHDSTTSDS 124
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPI 177
LL G+++ ALC+I ++ R L Q PRIL + GS D QY+ MN F+AQ+ V I
Sbjct: 125 LLGGAMARALCHIHKIQRELSLSHQLKPRILVVSGSSDSALQYMTFMNVFFTAQKENVVI 184
Query: 178 DSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVD 237
D C + + +S LQQ ITGG + + + GL +YLL +F R+ + LP P VD
Sbjct: 185 DCCMMDS-DSGLLQQGCDITGGQYLRIPTVVGLLEYLLWVFLPGPSCRSKIVLPPPTKVD 243
Query: 238 FRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+RA+CFCH +D+G++CSVCLSI+CK C+TC + F
Sbjct: 244 YRAACFCHHKLVDIGWVCSVCLSIFCKFSIICTTCNTEF 282
>gi|320582712|gb|EFW96929.1| Subunit of TFIIH complex [Ogataea parapolymorpha DL-1]
Length = 341
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 156/294 (53%), Gaps = 22/294 (7%)
Query: 5 PSKLYSDDVSLVVVLLDTNPFFW----SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVV- 59
P KL + SL+ V++D NP W S+S Q ++ ++ LN+ L+LN N V +
Sbjct: 16 PHKLVDETPSLLAVVVDINPLEWRKLEKDRSVSLKQVVSSIIVMLNSHLSLNSSNHVALY 75
Query: 60 IATGYN---SCDYVYDSSSTGNQSVGNGRMPS----LCATLLQNLEEFMNK-----DEQL 107
+A Y+ Y SST + + M + +++ +E +N+ + +
Sbjct: 76 LANSYSHGAQLIYPLTESSTSTRFLHTPGMYRQFRFIDGSIVDKIEHLLNEQPDTLSQLI 135
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQGSPDGPEQYVAIMNA 166
G+++ + I +L +G++SMALC+I ++ +S L+ + R+L + S D YV++MN
Sbjct: 136 GREQGKQHIKGTL-AGAMSMALCHINKIQQSDELNALKSRLLVVSISDDSTLPYVSVMNT 194
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN 226
IF++Q+ + +D C LG +S FLQQA+ T GV+ Q +GL QYL T D R
Sbjct: 195 IFASQKMKISVDVCKLGP-SSTFLQQAADATNGVYIYITQPEGLIQYLTTALFIDPMLRP 253
Query: 227 FLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 278
+ LP +DFRASCF ID+GY+CSVCL I +KC TC S F
Sbjct: 254 IIVLPTDESIDFRASCFITNKVIDVGYVCSVCLCILSVIPEDEKCPTCHSKFDH 307
>gi|432090055|gb|ELK23655.1| General transcription factor IIH subunit 3 [Myotis davidii]
Length = 247
Score = 147 bits (370), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 78/188 (41%), Positives = 117/188 (62%), Gaps = 11/188 (5%)
Query: 92 TLLQNLEEFMNKDEQLGKQ-EPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ--PRIL 148
+++ +++ M K + G+ EP LL+GSL+ ALCYI R+ + + + RIL
Sbjct: 49 VIVEEIKDLMTKSDIKGQHTEP-------LLAGSLAKALCYIHRMHKEVKDNQEMKSRIL 101
Query: 149 CLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLD 208
++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+
Sbjct: 102 VIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMP 160
Query: 209 GLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK 268
L QYLL +F D R+ L LP P+ VD+RA+C CH+N I++GY+CSVCLSI+C
Sbjct: 161 SLLQYLLWVFLPDQDQRSQLTLPPPIHVDYRAACLCHRNLIEIGYVCSVCLSIFCNFSPI 220
Query: 269 CSTCGSVF 276
C+TC + F
Sbjct: 221 CTTCETAF 228
>gi|242764012|ref|XP_002340688.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218723884|gb|EED23301.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 380
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 109/321 (33%), Positives = 156/321 (48%), Gaps = 61/321 (19%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LD NP W+ L FS+ L ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLAIVLDVNPHAWALLEDQLPFSKALANLLVFINAHLAFNYTNEVAVVASHSQRAAWLY 79
Query: 72 DS------SSTGNQSV-GNGRMPSLCA-------TLLQN--------LEE--FMNKDEQL 107
+ +ST Q G+ M A T QN +EE N E L
Sbjct: 80 PTHSQQQKTSTNRQDADGDIEMNGQEAHNIHSSRTSTQNNMYRPFRVVEEQVLENVRELL 139
Query: 108 GKQEPEGRIACS-LLSGSLSMALCYIQRVFRSGL-------------------------- 140
+ A S +L+G+L++AL +I R +
Sbjct: 140 ASTDASDVSATSTMLAGALTLALSHINRRTMTWTETHGNSSVDTANAATGSSSAAAVSGG 199
Query: 141 ---LHPQPRILCLQ--GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASY 195
L Q RIL + S D QY+ IMN+IF+ QR +PID C L ++ FLQQAS
Sbjct: 200 NVSLGLQSRILIVSVSSSTDSAHQYIPIMNSIFACQRLHIPIDVCKLSG-DAVFLQQASD 258
Query: 196 ITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYIC 255
T GV+ + GL QYL+ F D SR L LP V VDFRA+CFCH+ +++G++C
Sbjct: 259 ATRGVYMSLTEPRGLLQYLMMAFLPDQRSRKHLVLPSRVDVDFRAACFCHRRVVNIGFVC 318
Query: 256 SVCLSIYCKHLKK--CSTCGS 274
S+CLSI+C+ + C TCG+
Sbjct: 319 SICLSIFCEPPENGDCLTCGT 339
>gi|402224045|gb|EJU04108.1| transcription factor Tfb4 [Dacryopinax sp. DJM-731 SS1]
Length = 305
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/275 (34%), Positives = 129/275 (46%), Gaps = 21/275 (7%)
Query: 18 VLLDTNPFFW-----SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD 72
++LD P W S+ L FL L F+NA L L N V V +Y
Sbjct: 9 LILDLTPVPWDALSHSTPPLRLKDFLAQALVFINAHLALRNENSVSVFGALPGRSMILYP 68
Query: 73 SSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK--QEPEGRIACSLLSGSLSMALC 130
+ + Q E FM EQ + QE E + +L+ G+L+ +LC
Sbjct: 69 PAGSTQVEADENTF----HVFGQVDEGFMRSVEQEVEDLQEVEEDVPPALV-GALTKSLC 123
Query: 131 YIQRVFRSGLLHP---------QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
YI R+ RIL SPD Y+ MN IFSAQ+ V ID C
Sbjct: 124 YINRLSNPPPPSNPSEAPPPPPHSRILLFSVSPDASVAYIPFMNCIFSAQKLKVAIDVCK 183
Query: 182 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 241
L FL QA ++TGG Q + L QYL F ++ +R L +P VDFRA+
Sbjct: 184 LDESEVIFLHQACHLTGGAFVPITQREALLQYLSMCFLSETETRKTLAVPTLDKVDFRAA 243
Query: 242 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
CFCHK +D+GY+CSVCLSI+C+ + +CSTC + F
Sbjct: 244 CFCHKEIVDIGYVCSVCLSIFCQPVLECSTCRTKF 278
>gi|154310839|ref|XP_001554750.1| hypothetical protein BC1G_06398 [Botryotinia fuckeliana B05.10]
Length = 356
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 153/301 (50%), Gaps = 46/301 (15%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
S +V++LDTNP W SS+L S+ + ++L F+NA L +N NQV +IA+ + ++Y
Sbjct: 20 SCLVIILDTNPHAWEILSSTLPLSKAIANLLVFVNAHLAVNNSNQVAIIASHCHRAVWLY 79
Query: 72 DSSSTGNQSVGNG----RMPSLCA------TLLQNLEEFMNKDEQLGKQEPEGRIACSL- 120
+ + ++ G P A L++N +N L + E ++ +
Sbjct: 80 PAPPSASEDTEMGGSTTHGPPDDANKYRQFALIEN--TLLNSVRSLIESTTEQEVSTTTT 137
Query: 121 --LSGSLSMALCYIQRVF-----------------------RSGLLHPQPRILCLQGSPD 155
++G+L++AL YI + +GL Q RIL L S D
Sbjct: 138 TQMAGALTLALSYINKQLTAYSDVSAADSKPTPSDITPSDSTTGL---QSRILVLSVSGD 194
Query: 156 GPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL 215
QY+ IMN F+AQR +PID L A ++ FLQQAS T G++ + GL QYL+
Sbjct: 195 LAHQYIPIMNTTFAAQRMRIPIDILKL-AGDTVFLQQASDTTRGIYMHLKNPQGLLQYLM 253
Query: 216 TIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCG 273
F D SR L P VDFRA+CFCH+ +D+G++CS+CLSI+C + C TC
Sbjct: 254 MAFLPDQTSRKDLIAPTQEVVDFRAACFCHRKVVDVGFVCSICLSIFCSPPEGAICLTCS 313
Query: 274 S 274
+
Sbjct: 314 T 314
>gi|347440963|emb|CCD33884.1| similar to RNA polymerase II transcription factor B subunit 4
[Botryotinia fuckeliana]
Length = 358
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/301 (33%), Positives = 153/301 (50%), Gaps = 46/301 (15%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
S +V++LDTNP W SS+L S+ + ++L F+NA L +N NQV +IA+ + ++Y
Sbjct: 22 SCLVIILDTNPHAWEILSSTLPLSKAIANLLVFVNAHLAVNNSNQVAIIASHCHRAVWLY 81
Query: 72 DSSSTGNQSVGNG----RMPSLCA------TLLQNLEEFMNKDEQLGKQEPEGRIACSL- 120
+ + ++ G P A L++N +N L + E ++ +
Sbjct: 82 PAPPSASEDTEMGGSTTHGPPDDANKYRQFALIEN--TLLNSVRSLIESTTEQEVSTTTT 139
Query: 121 --LSGSLSMALCYIQRVF-----------------------RSGLLHPQPRILCLQGSPD 155
++G+L++AL YI + +GL Q RIL L S D
Sbjct: 140 TQMAGALTLALSYINKQLTAYSDVSAADSKPTPSDITPSDSTTGL---QSRILVLSVSGD 196
Query: 156 GPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL 215
QY+ IMN F+AQR +PID L A ++ FLQQAS T G++ + GL QYL+
Sbjct: 197 LAHQYIPIMNTTFAAQRMRIPIDILKL-AGDTVFLQQASDTTRGIYMHLKNPQGLLQYLM 255
Query: 216 TIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCG 273
F D SR L P VDFRA+CFCH+ +D+G++CS+CLSI+C + C TC
Sbjct: 256 MAFLPDQTSRKDLIAPTQEVVDFRAACFCHRKVVDVGFVCSICLSIFCSPPEGAICLTCS 315
Query: 274 S 274
+
Sbjct: 316 T 316
>gi|449546921|gb|EMD37890.1| hypothetical protein CERSUDRAFT_136815 [Ceriporiopsis subvermispora
B]
Length = 331
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/289 (34%), Positives = 148/289 (51%), Gaps = 29/289 (10%)
Query: 11 DDVSLVVVLLDTNPFFW---SSSS----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D S + V++D +P W S SS L FL+ +LAF N+ + N + V
Sbjct: 2 DKASHLSVVIDLSPTQWHLCSQSSNPHPLPLQLFLSQLLAFFNSHIACKDENSLAVFGAF 61
Query: 64 YNSCDYVYDSSSTGNQ-----SVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
+Y S++ + + N P L +T++ ++ + + E L + P G
Sbjct: 62 PGKSILLYSSTTIAAEEHSVNADANTYRPFKILDSTIMDSIRDQLEALELLEAEAPIG-- 119
Query: 117 ACSLLSGSLSMALCYIQRVF-------RSG--LLHPQPRILCLQGSPDGPEQYVAIMNAI 167
L G+++ +LCYI R+ R+G + PRIL SPD Y+ IMN+I
Sbjct: 120 ----LVGAITKSLCYINRLTIPSSSTTRAGEQAVPLDPRILIFSVSPDQSSSYIPIMNSI 175
Query: 168 FSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF 227
FSAQ+ V ID C + +S FLQQA+++TGG + + D L QYL F R
Sbjct: 176 FSAQKLKVTIDVCKIYGSDSVFLQQAAHLTGGSYLHLDRPDALLQYLTMSFLPPPGIRQL 235
Query: 228 LQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
L +P +DFRA+CFCHK +D+G++CSVCLSI+C + CSTC + F
Sbjct: 236 LSVPTQDKIDFRAACFCHKRIVDIGFVCSVCLSIFCNPVPVCSTCRTKF 284
>gi|340515579|gb|EGR45832.1| hypothetical protein TRIREDRAFT_67476 [Trichoderma reesei QM6a]
Length = 362
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 155/315 (49%), Gaps = 62/315 (19%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W++ SSLS +Q ++++L F+NA L + NQV VIA N ++Y
Sbjct: 20 SLLSIVLDTNPRAWAALDSSLSLAQAISNILVFVNAHLAFSNANQVAVIAAHVNRAVWLY 79
Query: 72 D-----SSSTGNQSVGNGRM-----------PS---------LCATLLQNLEEFMNKD-- 104
SS+T + G+ +M PS + +++ +++ M +
Sbjct: 80 PALQHPSSTTVKDNSGDVQMHDASAETSLPPPSANKYPQFAQIESSVFSSIQTLMAETTV 139
Query: 105 ---EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS--------------GLLHPQP-- 145
+QL Q LSG+L++ALC I + ++ P P
Sbjct: 140 QDLDQLTTQ----------LSGALTLALCRINKAAQALSSSDTTLSNAAPVNATAPPPVK 189
Query: 146 -RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKP 204
RI+ + S P QY+ MNA+F+A + V ID+ L A +S FLQQA + T G+ K
Sbjct: 190 GRIVVVSVSDSDPSQYIPTMNAVFAAAHNQVAIDTISL-AGDSTFLQQACFNTNGIFLKA 248
Query: 205 QQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK 264
GL YL+ D +R L P VDFR +CFCH +D GY+CSVCLSI+C
Sbjct: 249 ANPRGLLTYLMFGLIPDTEARASLITPTHDTVDFRTACFCHGKVVDTGYVCSVCLSIFCT 308
Query: 265 HLK--KCSTCGSVFG 277
+C TCG+V
Sbjct: 309 PPDNAECLTCGTVLA 323
>gi|302899112|ref|XP_003047982.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256728914|gb|EEU42269.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 355
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 150/301 (49%), Gaps = 37/301 (12%)
Query: 9 YSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+ D SL+ ++LDTNP W++ ++L S+ + ++L F+NA L + NQV +IA +
Sbjct: 15 HEDTPSLLTIVLDTNPRAWAAIGNALPLSRAIANILVFVNAHLAFSNANQVALIAAHVDR 74
Query: 67 CDYVYDSSSTGNQSV-GNGRMPSLCATLLQNLEEF----------MNKDEQLGKQEPEGR 115
++Y + + G+ M + + +F ++ +L Q E
Sbjct: 75 AQWLYPTPPKPTRDASGDVSMKDAAPSQTSSANKFPQFAQIEAAVLDSVRKLMDQTTEAD 134
Query: 116 IACSL--LSGSLSMALCYIQRVFRSGLLHP------------------QPRILCLQGSPD 155
+A + LSG+L++ALC+I + ++ L P + RIL + S
Sbjct: 135 LATTTTQLSGALTLALCHINKAAQA-LCSPTANLEDNHKATTTAPPTVRGRILVISVSDS 193
Query: 156 GPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL 215
P QY+ MNA+F+A + V ID+ L + FLQQA + TGG + GL YL+
Sbjct: 194 EPSQYIPTMNAVFAAAHAQVAIDTLSLTG-DPTFLQQACFNTGGTYLAATHPQGLLTYLM 252
Query: 216 TIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTCG 273
D +R L P VDFRA+CFCH +D G++CS+CLSI+C+ +C TCG
Sbjct: 253 FGLIADTEAREALVAPTHDTVDFRAACFCHGRVVDTGFVCSICLSIFCELPENSECLTCG 312
Query: 274 S 274
+
Sbjct: 313 T 313
>gi|156034244|ref|XP_001585541.1| hypothetical protein SS1G_13425 [Sclerotinia sclerotiorum 1980]
gi|154698828|gb|EDN98566.1| hypothetical protein SS1G_13425 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 356
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 154/303 (50%), Gaps = 50/303 (16%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
S +V++LDTNP W+ SS+L S+ + ++L F+NA L +N NQV +IA+ + ++Y
Sbjct: 20 SCLVIILDTNPHAWALLSSTLPLSKAVANLLVFINAHLAVNNANQVAIIASHCHRAVWLY 79
Query: 72 DSSSTGNQSVGNG--------------RMPSLCA-TLLQNLEEFMNKDEQLGKQEPEGRI 116
+ + ++ + G R +L TLL +L ++ ++
Sbjct: 80 PAPPSASEDIEMGGSTTHGPPNDANKYRQFALIENTLLNSLRNLISST----TEQEVSTT 135
Query: 117 ACSLLSGSLSMALCYIQRVFRS-----------------------GLLHPQPRILCLQGS 153
+ ++G+L++AL YI + + GL Q RIL L S
Sbjct: 136 TTTQMAGALTLALSYINKQSLAYNDVSASDSKPTTSDVNTSDSSIGL---QSRILVLSVS 192
Query: 154 PDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQY 213
D QY+ IMN F+AQR +PID L A ++ FLQQAS T G++ + GL QY
Sbjct: 193 GDLAHQYIPIMNTTFAAQRMRIPIDILKL-AGDTVFLQQASDTTRGIYMHLKNPQGLLQY 251
Query: 214 LLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CST 271
L+ F D SR L P VDFRA+CFCH+ +D+G++CS+CLSI+C + C T
Sbjct: 252 LMIAFLPDQTSRKDLIAPTQEVVDFRAACFCHRKVVDVGFVCSICLSIFCSPPEGAICLT 311
Query: 272 CGS 274
C +
Sbjct: 312 CST 314
>gi|428174859|gb|EKX43752.1| hypothetical protein GUITHDRAFT_87651 [Guillardia theta CCMP2712]
Length = 343
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 159/316 (50%), Gaps = 36/316 (11%)
Query: 11 DDV-SLVVVLLDTNPFFWSSSSL----SFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
DD+ S ++V+LD N W+ S+ + + L +L FL A L+ N V +IA
Sbjct: 22 DDLPSSLIVILDLNQASWTESTAKGGPTVIEALESLLTFLRAFFMLHGGNTVTIIAAHPY 81
Query: 66 SCDYVYDS------SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE-PEGRIAC 118
+++Y S + G+Q G M + L + + + QE + + C
Sbjct: 82 GSEFLYQSPALQRSKAHGHQQSGALEMDEIDHRLHEKIVSLSKSLKSKSSQENSDSSMKC 141
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
SLLS + ++A C + R+ LL PR+L L S + P QY+ IMN IFS Q++ V ID
Sbjct: 142 SLLSSAFALAACTVNRISSHKLLRMLPRVLVLTASTELPSQYIPIMNCIFSMQKANVLID 201
Query: 179 SCYLGAQNSAFLQQASYITGGVHHKPQ------QLDGLFQYLLTIFGTDLHSR------- 225
+ + + +FLQQA+ IT GV+ +P+ L +++++F D H+R
Sbjct: 202 ALVVSDGDCSFLQQAADITNGVYLRPELSKVGSSPGALLSWMISVFLGDKHTRFLNADSQ 261
Query: 226 ---NFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK-HLKKCSTCGSVFGQAQT 281
L+LP+ VD+R+SCF +D+G++CSVCLSI+ K C TC S +
Sbjct: 262 SRSTLLRLPQAQDVDYRSSCFKTGQLVDVGFVCSVCLSIFAKCDFFICPTCDS-----KI 316
Query: 282 QSDEP--SATNRKRKT 295
D P +A N+KRK
Sbjct: 317 ALDRPAGAAVNKKRKV 332
>gi|391332492|ref|XP_003740668.1| PREDICTED: general transcription factor IIH subunit 3-like
[Metaseiulus occidentalis]
Length = 297
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 141/269 (52%), Gaps = 6/269 (2%)
Query: 10 SDDVS-LVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D+VS L+ V+LDT+ + Q L V+ F NA L + N + V+A ++
Sbjct: 10 EDEVSELLAVVLDTSFNSALIKEKNVGQLLDAVVIFSNAHLMNSSKNTLAVVACHPHTAK 69
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS-LLSGSLSM 127
+Y S+ N R P +L + + + + +G + LL+G +++
Sbjct: 70 MIY---PVKKDSIQNIRPPDAQMEILAHATQVIRDGIKEVVTSWQGVYSIEPLLTGGMAL 126
Query: 128 ALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 187
ALCYI + + + RIL L S + QY+ MN F+AQR + +DSC + +
Sbjct: 127 ALCYIAKRMANTVGKLNGRILVLSSSGESAHQYLNFMNVFFAAQRKAIVVDSCVI-QNDC 185
Query: 188 AFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKN 247
LQQ + ITGG + K + GL +YLL +F R L LPKP VD+R +CFCH+N
Sbjct: 186 GLLQQGADITGGNYLKAPSIAGLLEYLLWVFLPPKSLRAKLVLPKPDVVDYRTACFCHRN 245
Query: 248 TIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
I++GY+CSVCLSI+C+ CSTC + F
Sbjct: 246 LIEVGYVCSVCLSIFCQFAPICSTCQTHF 274
>gi|346324613|gb|EGX94210.1| transcription factor TFIIH subunit Tfb4 [Cordyceps militaris CM01]
Length = 366
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/311 (33%), Positives = 151/311 (48%), Gaps = 56/311 (18%)
Query: 14 SLVVVLLDTNPFFWS-----SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
SL+ V++DTNP W+ S LS + + ++L F+NA L + NQV VIA N
Sbjct: 20 SLLSVIIDTNPRAWAVLDDGSLPLSLTAAVANLLLFINAHLAFSGANQVAVIAAHVNRAV 79
Query: 69 YVYDSSSTG----NQSVGNG------------------RMPSLC---ATLLQNLEEFMNK 103
++Y SS + + + +G + P AT+L +L++ M +
Sbjct: 80 WLYPSSHSPKPIQDNTSADGDVAMADAPAAATTPSSANKYPQFAQIEATVLGSLKKLMAE 139
Query: 104 DEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR---------------SGLLHPQP--- 145
E + + LSG+L++ALC+ + R SG P P
Sbjct: 140 -----TTERDLDSTTTQLSGALTLALCHTNKASRALGASDTAIHEAAQTSGTTPPSPMKG 194
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 205
RIL L S QY+ MNA+F+A V ID+ L A ++ FLQQA + TGGV +
Sbjct: 195 RILVLSVSDSESSQYIPTMNAVFAAAHGRVAIDALAL-AGDATFLQQACFNTGGVFLRAA 253
Query: 206 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK- 264
GL YL+ D +R L P VDFRA+CFCH N +D G++CS+CLSI+C+
Sbjct: 254 NPQGLLAYLMFGLVADTEAREALVAPTHDTVDFRAACFCHGNVVDTGFVCSICLSIFCEL 313
Query: 265 -HLKKCSTCGS 274
+C TCG+
Sbjct: 314 PDNAECFTCGT 324
>gi|121713686|ref|XP_001274454.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
clavatus NRRL 1]
gi|119402607|gb|EAW13028.1| transcription factor TFIIH subunit Tfb4, putative [Aspergillus
clavatus NRRL 1]
Length = 386
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 101/326 (30%), Positives = 157/326 (48%), Gaps = 66/326 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTIVLDTNPHAWALLEPSLPLSTAIANILVFINAHLACNYANEVAVVASHTHKATWLY 79
Query: 72 ----------------DSSSTGNQSVGNGRMPSLCATLLQN-------LEEFMNKDEQ-- 106
+ + G+ ++ + S A N +EE ++++ +
Sbjct: 80 PCETQHPRTTTASAPASADNDGDVAMDDSSGSSGAADAHVNKYRPFRIVEEQVSRNLRRL 139
Query: 107 LGKQEPEGRIA--CSLLSGSLSMALCYIQR------------------------------ 134
LG A ++++G+L++AL +I R
Sbjct: 140 LGATTATDVQASTTTMMAGALTLALSHINRRSLAWAEAHGGAAATGSAGAAEGAPGGGGR 199
Query: 135 ----VFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFL 190
+ L + I+ + S D QY+ IMNAIF+ QR VPID C L ++ FL
Sbjct: 200 ADGEGGGAEGLQSRILIISVSSSTDSAHQYIPIMNAIFACQRLHVPIDVCKLSG-DAVFL 258
Query: 191 QQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTID 250
QQAS T GV+ + GL QYL+ F D SR L LP V VDFRA+CFCH+ +D
Sbjct: 259 QQASDATKGVYMSLAEPRGLLQYLMMAFLPDQRSRRHLVLPTRVDVDFRAACFCHRRVVD 318
Query: 251 MGYICSVCLSIYCKHLKK--CSTCGS 274
+G++CS+CLSI+C+ + C TCG+
Sbjct: 319 IGFVCSICLSIFCEPPENGGCLTCGT 344
>gi|452820306|gb|EME27350.1| transcription initiation factor TFIIH subunit H3 isoform 2
[Galdieria sulphuraria]
gi|452820307|gb|EME27351.1| transcription initiation factor TFIIH subunit H3 isoform 1
[Galdieria sulphuraria]
Length = 328
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 149/299 (49%), Gaps = 37/299 (12%)
Query: 10 SDDVSLVVVLLDTNP--------FFWSSSSLS--------FSQFLTHVLAFLNAILTLNQ 53
SD +L+ VLLD +P F S S+ S FL ++ FL+ L N
Sbjct: 33 SDKSNLLCVLLDLSPNLFDRLDKFVPSQSAKSVDLIEADALETFLLQLITFLHVFLLSNF 92
Query: 54 LNQVVVIATGYNSCDYVYDSSSTGNQSVGNG------------RMPSLCATLLQNLEEFM 101
N++V+I + VY+ S + R+ L + L+N+ F+
Sbjct: 93 ANRLVIIVYNEYNIHVVYEDKGLNTLSDPSNSASFLLTEERQERLTRLDSEFLKNVASFI 152
Query: 102 NKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYV 161
+ E G +LLS SLS ALCY+ R S + RILCL S D P+QY+
Sbjct: 153 -ESYPYNSCEENG----TLLSASLSFALCYLHRRILSE--RYEARILCLHASSDVPKQYI 205
Query: 162 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDG--LFQYLLTIFG 219
+MN+IF AQR + ID C L + S+ LQQA+++TGG++ KP+Q + L YL +++
Sbjct: 206 GVMNSIFCAQRWSILIDVCNLHEEESSLLQQAAHLTGGIYFKPKQSEAIPLSNYLCSLYF 265
Query: 220 TDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQ 278
+R +L++P VD A CF I MGYICSVCL+ + + C+ CG+ F +
Sbjct: 266 PSRDARKYLKIPVLNSVDCSALCFESGEKIHMGYICSVCLATFGRKRLSCNICGAEFAE 324
>gi|412993660|emb|CCO14171.1| predicted protein [Bathycoccus prasinos]
Length = 370
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 69/167 (41%), Positives = 105/167 (62%), Gaps = 11/167 (6%)
Query: 121 LSGSLSMALCYIQRVFRSGLLHP--QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
++G++S+AL Y R+ R L + R+L +Q S D EQYV +MNA+F+AQ S + ID
Sbjct: 203 IAGAISLALTYANRIERDPSLRGRVKSRVLVVQASEDDAEQYVPMMNAMFAAQSSNILID 262
Query: 179 SCYLGAQNSAFLQQASYITGGVHHKPQQ---------LDGLFQYLLTIFGTDLHSRNFLQ 229
L + S+FLQQA++++GG++ KP++ + L + L F D ++R FL+
Sbjct: 263 CLCLNEKESSFLQQAAFVSGGIYAKPEKSKKGGGEETREDLLERALCSFLPDRYTRRFLR 322
Query: 230 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
P+ +DFR+SCFCH N I G++CSVCLS++CK C TCG+ F
Sbjct: 323 PPRAGSIDFRSSCFCHGNRISKGFVCSVCLSVFCKKEGACQTCGAAF 369
>gi|400593294|gb|EJP61268.1| transcription factor tfb4 [Beauveria bassiana ARSEF 2860]
Length = 373
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 107/318 (33%), Positives = 151/318 (47%), Gaps = 63/318 (19%)
Query: 14 SLVVVLLDTNPFFWS-----SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
SL+ V++DTNP W+ LS + ++L F+NA L + NQV VIA N
Sbjct: 20 SLLSVIIDTNPRAWAVLDDGDLPLSLPTAVANLLLFINAHLAFSGANQVAVIAAHVNRAV 79
Query: 69 YVYD------------SSSTGNQSVGN----------GRMPS----------LCATLLQN 96
++Y +S N S G+ G PS + AT+L +
Sbjct: 80 WLYPSSQQQQQNLLSNTSPRPNPSDGDVDMADAPSATGTTPSSANKYPPFAHIEATVLAS 139
Query: 97 LEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR---------------SGLL 141
L++ M + E + + LSG+L++ALC+ + R SG
Sbjct: 140 LKQLMAE-----TTERDLDSTTTQLSGALTLALCHNNKAGRALSASDTALLDAAQASGAT 194
Query: 142 HPQP---RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITG 198
P P RIL L S QY+ IMNA+F+A S V ID+ L A ++ FLQQA + TG
Sbjct: 195 APPPMKGRILVLSVSDSESAQYIPIMNAVFAAAHSHVAIDTLAL-AGDATFLQQACFGTG 253
Query: 199 GVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVC 258
GV + GL YL+ D +R L P VDFRA+CFCH N +D G++CS+C
Sbjct: 254 GVFLRAANPQGLLAYLMFGMIADSEAREALVAPAHDTVDFRAACFCHGNVVDTGFVCSIC 313
Query: 259 LSIYCK--HLKKCSTCGS 274
LSI+C +C TCG+
Sbjct: 314 LSIFCDLPENAECLTCGT 331
>gi|295670289|ref|XP_002795692.1| RNA polymerase II transcription factor B subunit 4
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226284777|gb|EEH40343.1| RNA polymerase II transcription factor B subunit 4
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 422
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 108/353 (30%), Positives = 163/353 (46%), Gaps = 88/353 (24%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP+ W+ S+L S + ++L F+NA L N N+V V+A+ N ++Y
Sbjct: 33 SLLTVILDTNPYAWALLESTLPLSAAIANLLVFINAHLACNYANKVAVVASHCNHAAWLY 92
Query: 72 DSSSTGNQS-------------VGNGRMPSL---------CATLLQNLEEFMNKDEQLGK 109
+ ST + S NG+ PS + L F+ +EQL +
Sbjct: 93 PTPSTPSISRSKAIQLDADGDITMNGQ-PSTEPERENQQQSQSPLNKYRPFLLVEEQLTR 151
Query: 110 Q-------EPEGRIACS---LLSGSLSMALCYIQR-----VFRSGLLHPQPR-------- 146
P + + +L+G+L++AL +I R G +P P
Sbjct: 152 NLHCILSATPPSAVTSTTSTMLAGALTLALSHINRESIAYAEAHGAANPDPTSSTTGPAT 211
Query: 147 -----------------------------------ILCLQGSPDGPEQYVAIMNAIFSAQ 171
I+ L + + Y+ IMN+IF+ Q
Sbjct: 212 STASGLPPPPNSTTTDPASAVANHLNPTALQSRILIISLSNTTHSAQHYIPIMNSIFACQ 271
Query: 172 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ-QLDGLFQYLLTIFGTDLHSRNFLQL 230
R +PID L A ++AFLQQAS TGG++ G QYL+ F D +R L L
Sbjct: 272 RLHIPIDIIKL-AGDAAFLQQASDATGGIYIPINTHPAGFLQYLMLGFLPDQRARAHLIL 330
Query: 231 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK---KCSTCGSVFGQAQ 280
P V VDFRA+CFCH+ +D+G++CS+CLSI+C+ L +C TCG+ G A+
Sbjct: 331 PSRVDVDFRAACFCHRKVVDVGFVCSICLSIFCEPLGGEGECLTCGTRLGMAE 383
>gi|336371329|gb|EGN99668.1| hypothetical protein SERLA73DRAFT_53296 [Serpula lacrymans var.
lacrymans S7.3]
Length = 297
Score = 143 bits (360), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 141/291 (48%), Gaps = 39/291 (13%)
Query: 18 VLLDTNPFFWSSSS-------LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
V+LD +P W S+ LS FL+ +LAFLNA + N + V +
Sbjct: 9 VILDLSPTQWHLSAQSSNQYPLSIHSFLSQLLAFLNAHIASKHENTLAVFGAFPGKSVML 68
Query: 71 YDSSSTGNQSVGNGRMPSLCATLLQN---LEEFMNKDEQLGKQEPEGRIACSLLSGSLSM 127
Y S+ V S + + + + MN+ + LG + E A L G+L+
Sbjct: 69 YSSTDPVADDVPPADANSYSSFKVVDFTIVRSIMNEFDALGNLDEEPPCA---LVGALTK 125
Query: 128 ALC--------YIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
ALC + + P PRIL L SPD Y+ IMN+IFSAQ+ V ID
Sbjct: 126 ALCCKSISAHFHSPNAVEDPAVLPDPRILILSVSPDLSTSYIPIMNSIFSAQKLKVTIDV 185
Query: 180 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFR 239
C + ++ FLQQA+++TGG + ++ D L QYL F + R L +PK +DFR
Sbjct: 186 CKVYGPDAVFLQQAAHLTGGSYIFLERRDALLQYLTMSFLSPPALRQVLAVPKQDKIDFR 245
Query: 240 ASCFCHKNTIDMGYICSVCLS------------------IYCKHLKKCSTC 272
A+CFCHKN +D+G++CSVCLS ++C+ + CSTC
Sbjct: 246 AACFCHKNIVDVGFVCSVCLSSNHILFYVVKLWFTYMCTVFCQPVPVCSTC 296
>gi|225717796|gb|ACO14744.1| General transcription factor IIH subunit 3 [Caligus clemensi]
Length = 302
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 152/298 (51%), Gaps = 24/298 (8%)
Query: 12 DVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+ L+++++D NP + L +L F NA L L+ N + I + + +
Sbjct: 14 EAQLLILVMDMNPNQRLLLEEPTRLTSVLDSLLCFSNAHLLLHPSNALAAIGSLSSGSYF 73
Query: 70 VY------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSG 123
+Y D+S Q G + +L T ++N K QL + E G S LSG
Sbjct: 74 LYPSSCIDDTSPELRQLDGQYELFTLVETSVRN------KFSQLLEAETSGS-EDSPLSG 126
Query: 124 SLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 183
SL+MAL YI R R + RIL L S D QY+ MN F+AQ+ V +D+C L
Sbjct: 127 SLAMALAYINRK-RKESPELRARILILTASGDTASQYMNYMNVFFTAQKLNVLLDACMLQ 185
Query: 184 AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCF 243
+ +S LQQ + ITGG++ L L Q+LL IF R L LP V VDFRA+CF
Sbjct: 186 S-DSPLLQQGADITGGLYFNVPDLAALLQFLLWIFLPSAEIRPQLGLPTGVKVDFRAACF 244
Query: 244 CHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF-------GQAQTQSDEPSATNRKRK 294
CH+ + +G++CSVCLSI+CK C+TC +VF G+ + + S++ KRK
Sbjct: 245 CHRQLVGVGFVCSVCLSIFCKFSPICTTCQTVFRVPAPLLGKKKKSIAQGSSSLLKRK 302
>gi|326437202|gb|EGD82772.1| hypothetical protein PTSG_03422 [Salpingoeca sp. ATCC 50818]
Length = 311
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/338 (32%), Positives = 155/338 (45%), Gaps = 92/338 (27%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL V+++D +P W S S + + + FLNA L+++ N + VI ++Y
Sbjct: 3 SLFVLIVDLHPARWKQLSEDASLDEAMNQICVFLNAQLSVHVSNTIAVIGAAPKKSMFLY 62
Query: 72 DSSSTGNQSVGNGRMPS----------LCATLLQNLEEFMNKDEQLGKQEPEGRIACSLL 121
S+ +MPS + AT+L N + N EQ G++ P S L
Sbjct: 63 PSAV---------KMPSPDDRQELFSEMNATILANATKLFN--EQSGERHP------SDL 105
Query: 122 SGSLSMALCYIQRVFRSGLLHPQ------------------------------------- 144
+G+LS ALC+I R R L PQ
Sbjct: 106 AGALSKALCFINRTVRGTSLQPQHTTASSSVTSRFIAGDKATPASSSSSSSSSAPKAAGR 165
Query: 145 ----------PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQAS 194
PRI + SPD +Y A MN IF+AQ++ VPID C +G + +A LQQA+
Sbjct: 166 DRVSSGARVTPRIGVVSVSPDSSVEYFAAMNCIFAAQKNDVPIDVCAMG-EEAAILQQAA 224
Query: 195 YITGG----VHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTID 250
++T G VHH Q L L +T +D H L P ++F ASCFCH T+D
Sbjct: 225 HLTNGTYVKVHHPSQLLQSLMMGFVT--SSDAH---VLVRPVQRRINFDASCFCHGRTVD 279
Query: 251 MGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSA 288
+GY+C+VCLS+YC+ L C CG+ F SD+P A
Sbjct: 280 IGYVCTVCLSVYCERLASCRICGAEF------SDKPGA 311
>gi|212529242|ref|XP_002144778.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
marneffei ATCC 18224]
gi|210074176|gb|EEA28263.1| transcription factor TFIIH subunit Tfb4, putative [Talaromyces
marneffei ATCC 18224]
Length = 380
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 149/321 (46%), Gaps = 61/321 (19%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LD NP W+ L FS+ L ++L F+NA L N N+V VIA+ ++Y
Sbjct: 20 SLLAIVLDINPHAWALLEDQLPFSKALANILVFINAHLACNYTNEVAVIASHSQRAAWLY 79
Query: 72 ----------------DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPE-- 113
D N + S +T F +EQ+ + E
Sbjct: 80 PAHNQQQKPSTNRLDADGDIDMNGEEAHNSRASRSSTQSNMYRPFRLVEEQVMENVRELL 139
Query: 114 -------GRIACSLLSGSLSMALCYIQRVFRSGL-------------------------- 140
++++G+L++AL +I R +
Sbjct: 140 ASTNASDVTATSTMMAGALTLALSHINRRTMTWTETHGNSNIETAGASASSSATAAVSGG 199
Query: 141 ---LHPQPRILCLQ--GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASY 195
L Q RIL + S D QY+ IMN+IF+ QR +PID C L ++ FLQQAS
Sbjct: 200 NLSLGLQSRILIVSVSSSTDSAHQYIPIMNSIFACQRLHIPIDVCKLSG-DAVFLQQASD 258
Query: 196 ITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYIC 255
T GV+ + GL QYL+ F D SR L +P V VDFRA+CFCH+ +++G++C
Sbjct: 259 ATRGVYMSLSEPRGLLQYLMMAFLPDQRSRKHLIVPSRVDVDFRAACFCHRRVVNIGFVC 318
Query: 256 SVCLSIYCKHLKK--CSTCGS 274
S+CLSI+C+ + C TCG+
Sbjct: 319 SICLSIFCEPPENGDCLTCGT 339
>gi|224156833|ref|XP_002337765.1| predicted protein [Populus trichocarpa]
gi|222869675|gb|EEF06806.1| predicted protein [Populus trichocarpa]
Length = 77
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/77 (84%), Positives = 71/77 (92%)
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
MNAIFSAQRSMVPIDSCY+GA NSAFLQQASYITGGV+ KPQ LDGLFQYL T+F TDLH
Sbjct: 1 MNAIFSAQRSMVPIDSCYVGAHNSAFLQQASYITGGVYVKPQHLDGLFQYLTTVFATDLH 60
Query: 224 SRNFLQLPKPVGVDFRA 240
SR+F+QLP+P GVDFRA
Sbjct: 61 SRSFIQLPRPAGVDFRA 77
>gi|259489666|tpe|CBF90125.1| TPA: transcription factor TFIIH complex subunit (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 392
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 154/334 (46%), Gaps = 74/334 (22%)
Query: 14 SLVVVLLDTNPFFWS------SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
SL+ V++DTNP W+ + L FS L ++L FLNA L N N+V V+A+ +
Sbjct: 20 SLLTVIIDTNPHAWALLEQNEKNQLPFSTALANILVFLNAHLACNYANEVAVVASHTHKA 79
Query: 68 DYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEP----EGRI------- 116
++Y S ++ S + ++ + K Q+ K P E ++
Sbjct: 80 AWLYPSPNSPTTSADSDGDVTMSNNNHMSTGGGSGKPSQVNKYRPFRIVEEQVTSNLRHL 139
Query: 117 ------------ACSLLSGSLSMALCYIQR----------------VFRSGL-------- 140
A ++++G+L++AL +I R RSG
Sbjct: 140 VDSTNRDDLDSGASTMMAGALTLALSHINRRTIAWAEAHGGGDASSFSRSGDPDTSTTSM 199
Query: 141 ------------------LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL 182
L + I+ + + QY+ IMN IF+ QR +PID C L
Sbjct: 200 IARRSTTTTATNDGAAEGLQSRILIISVSSATGSAHQYIPIMNGIFACQRLHIPIDVCKL 259
Query: 183 GAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASC 242
++ FLQQAS T G++ + GL QYL+ F D SR L LP V VDFRA+C
Sbjct: 260 SG-DAVFLQQASDATKGIYMSLSEPRGLLQYLMMAFLPDQRSRKHLILPTRVDVDFRAAC 318
Query: 243 FCHKNTIDMGYICSVCLSIYCKHLKK--CSTCGS 274
FCH+ +D+G++CS+CLSI+C+ + C TCG+
Sbjct: 319 FCHRRVVDIGFVCSICLSIFCEPPENGDCLTCGT 352
>gi|440633398|gb|ELR03317.1| hypothetical protein GMDG_06064 [Geomyces destructans 20631-21]
Length = 363
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 150/308 (48%), Gaps = 52/308 (16%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ +L S+ + +++ F+NA L N NQV V+A+ + ++Y
Sbjct: 20 SLLTIVLDTNPHAWALLHDTLPLSKAVANLMVFINAHLAFNNANQVAVVASHSHRAAWLY 79
Query: 72 ----DSSSTGNQSV---GNGRMPS-------------LCATLLQNLEEFMNKDEQLGKQE 111
++ G +V G RM + LL +L E ++ E
Sbjct: 80 PRPPNARGAGEDTVMTDGYDRMTKAPNDANKYRPFSLIEHDLLTSLRELIDST----TTE 135
Query: 112 PEGRIACSLLSGSLSMALCYIQR---------VFRSGLLHPQP--------------RIL 148
+ ++G+L++AL Y + V SG HP RIL
Sbjct: 136 DVSSTTTTQMAGALTLALSYSNKATVTYNESGVSSSGKSHPDGGENPTDDVPRGLLCRIL 195
Query: 149 CLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLD 208
+ S D QY+ IMN F+AQR +PID L ++ FLQQAS T G + + +
Sbjct: 196 VISVSGDLAHQYIPIMNTTFAAQRLRIPIDILKLSG-DTVFLQQASDATNGTYMQLRNPQ 254
Query: 209 GLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK 268
GL Q L+ F D +R L P VDFRA+CFCH+N +D+G++CS+CLSI+C +
Sbjct: 255 GLLQSLMLGFLPDQSARTHLISPTQEVVDFRAACFCHRNVVDVGFVCSICLSIFCSPPEG 314
Query: 269 --CSTCGS 274
C TCG+
Sbjct: 315 AICLTCGT 322
>gi|452978955|gb|EME78718.1| hypothetical protein MYCFIDRAFT_124295, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 339
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 155/334 (46%), Gaps = 80/334 (23%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
+L+ V+LDTNP W+ SLS SQ + ++L F+NA + +N N+V V+A+ +++Y
Sbjct: 4 ALLTVILDTNPHAWALLEHSLSLSQLVVNLLVFVNAHIAINPANRVAVVASHSECAEWLY 63
Query: 72 DSSSTGNQSVGNGR-------------------------------MPSLCATLLQNLEEF 100
+ + NG + + NL
Sbjct: 64 PTPARAQSHAANGNGNGTHVEMADGDPAPRGGPVQAPDDANKYRPFAHIEHAITTNLRRL 123
Query: 101 MNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQR---VFRSG------------------ 139
M+ Q ++++G+L+ AL YI + SG
Sbjct: 124 MSSTSAEALQS----TPATMMAGALTRALAYISKQSQTLPSGAASSQQFNYSDPNSVAGG 179
Query: 140 ------------LLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 187
+L RIL L S D +QY+ IMN+IF+ QR +PID L A ++
Sbjct: 180 NEASSGTSQGNNMLGLTSRILILSVSGDLADQYIPIMNSIFACQRLSIPIDILKL-AGDT 238
Query: 188 AFLQQASYITGGVH----HKPQQLDGLFQYLLTIFGTDLHSRNFLQLP-KPVGVDFRASC 242
FLQQA+ TGG++ H+ + G QYL+ + D +R L +P + GVDFRA+C
Sbjct: 239 VFLQQAADATGGIYMALDHRTRA--GFLQYLMFAYLPDEAARKHLIVPGEGEGVDFRAAC 296
Query: 243 FCHKNTIDMGYICSVCLSIYCK--HLKKCSTCGS 274
FCH+ +D+G++CS+CLSI+C+ H C TCGS
Sbjct: 297 FCHRRVVDIGFVCSICLSIFCEPLHDSTCLTCGS 330
>gi|254567625|ref|XP_002490923.1| Subunit of TFIIH complex, involved in transcription initiation,
similar to 34 kDa subunit of human T [Komagataella
pastoris GS115]
gi|238030720|emb|CAY68643.1| Subunit of TFIIH complex, involved in transcription initiation,
similar to 34 kDa subunit of human T [Komagataella
pastoris GS115]
Length = 328
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 149/289 (51%), Gaps = 33/289 (11%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVI-ATGYNS---- 66
SL+ V++DTNP W+ + + VL LNA L+LN N+V V+ ++ NS
Sbjct: 23 SLLAVVIDTNPLEWTKLKGVICLKELCKSVLVLLNAHLSLNSGNRVAVLTSSSLNSGPKF 82
Query: 67 -----CDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLG--KQEPEGRIACS 119
D Y+ + S + + + ++Q L+ ++ +E L QE +G IA
Sbjct: 83 LYPDPNDKTYEKRESLLSSDIHRQFKFVDQKIIQELQILLD-NEPLNPENQELKGSIA-- 139
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQ-------PRILCLQGSPDGPEQYVAIMNAIFSAQR 172
G++SMAL YI R+ + P+ ++L + S D +QYV MN IFSAQ+
Sbjct: 140 ---GAMSMALSYINRLTN---IEPESTGNTLRAKMLVISISDDSTQQYVPFMNCIFSAQK 193
Query: 173 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 232
V ID C +G +S+FLQQAS +T GV+ + + GL QYL T D R + LP
Sbjct: 194 MKVSIDVCKMGP-DSSFLQQASDVTNGVYMLIKNVHGLIQYLTTALFIDPSLRPIMVLPT 252
Query: 233 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCGSVFGQA 279
+DFRASCF ID+GY+CSVCL I+ + C TC S F A
Sbjct: 253 NSDLDFRASCFVTNKVIDIGYVCSVCLCIFSIIPRNNVCPTCQSKFDDA 301
>gi|449295631|gb|EMC91652.1| hypothetical protein BAUCODRAFT_300256 [Baudoinia compniacensis
UAMH 10762]
Length = 386
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 153/329 (46%), Gaps = 73/329 (22%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W+ +L ++ + +L F+NA L +N NQV VIA+ +++Y
Sbjct: 20 SLLTIIIDTNPHAWALLDDTLPLTKAVASLLVFINAHLAINYTNQVAVIASHSERAEWLY 79
Query: 72 DS-----SSTGNQSVGNGR-----------------------MPSLCATLLQNLEEFMNK 103
+ + N ++ NGR L TL+ NL + MN
Sbjct: 80 PTDVHPDNVQSNGALANGRDYEDLMDRGGPVQPPDDANKYRPFAQLEHTLMYNLRKMMNT 139
Query: 104 DEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS------------------------- 138
+ ++L+G+L+ AL YI + S
Sbjct: 140 T----TTDAINSSPATMLAGALTRALAYISKQTASLPTATSSTQFNYSDPSAMAGGNELT 195
Query: 139 -------GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQ 191
L RIL + S D ++Y+ IMN IF+ QR VPID L A + FLQ
Sbjct: 196 TDPTKSANALGLSSRILIVSVSGDLADRYIEIMNCIFACQRMSVPIDVLKL-AGDPVFLQ 254
Query: 192 QASYITGGVH---HKPQQLDGLFQYLLTIFGTDLHSRNFLQLP-KPVGVDFRASCFCHKN 247
QA+ TGG++ GL QYL+ + D +RN L P + GVDFRA+CFCHK
Sbjct: 255 QAADTTGGIYMSLSTSTARAGLLQYLMFAYLMDQTARNHLIAPGEGEGVDFRAACFCHKR 314
Query: 248 TIDMGYICSVCLSIYCKHLKK--CSTCGS 274
+D+G++CS+CLSI+C+ L C CGS
Sbjct: 315 VVDIGFVCSICLSIFCEPLPDGTCLLCGS 343
>gi|358366716|dbj|GAA83336.1| transcription factor TFIIH complex subunit [Aspergillus kawachii
IFO 4308]
Length = 386
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 102/326 (31%), Positives = 153/326 (46%), Gaps = 66/326 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ S +L S + ++L F+NA L N N+V V+++ + ++Y
Sbjct: 20 SLLTIILDTNPHAWALLSPTLPLSTAIANILVFINAHLASNYANEVAVVSSHTSQATWLY 79
Query: 72 ----DSSSTGNQSVGNGRMPSLCATL------------LQNLEEFMNKDEQLG------- 108
+S N +G +P + F +EQ+
Sbjct: 80 PVEKSPNSNSNNPDPDGDIPMPTQQPQPPSNTTTTTTNINKYRPFRIVEEQVSSHLHNLM 139
Query: 109 -KQEPEG--RIACSLLSGSLSMALCYIQR------------VFRSGLLHP---------- 143
+ P ++++G+L++AL +I R + S P
Sbjct: 140 TQTTPSTLQSTTSTMMAGALTLALSHINRRTLAWNEAHGGDIDTSNPNDPSSTTSTSTSS 199
Query: 144 -----------QPRILCLQ--GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFL 190
Q RIL L S QY+ IMNAIF+ QR +PID C + ++ FL
Sbjct: 200 SNTKGTAESTLQSRILILSVSSSTGSAHQYIPIMNAIFACQRLHIPIDVCKVSG-DAVFL 258
Query: 191 QQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTID 250
QQAS T GV+ + GL QYL+ F D SR L LP V VDFRA+CFCH+ +D
Sbjct: 259 QQASDATKGVYMALDEPKGLLQYLMMAFLPDQRSRRHLVLPTRVDVDFRAACFCHRRVVD 318
Query: 251 MGYICSVCLSIYCKHLKK--CSTCGS 274
+G++CS+CLSI+C+ L C TCG+
Sbjct: 319 VGFVCSICLSIFCEPLGDGVCLTCGT 344
>gi|425772016|gb|EKV10443.1| Transcription factor TFIIH subunit Tfb4, putative [Penicillium
digitatum Pd1]
gi|425777277|gb|EKV15458.1| Transcription factor TFIIH subunit Tfb4, putative [Penicillium
digitatum PHI26]
Length = 387
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 104/333 (31%), Positives = 153/333 (45%), Gaps = 77/333 (23%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA---------- 61
SL+ +++DTNP W+ SL S+ + ++L F+NA L N N+V V+A
Sbjct: 20 SLLTIVIDTNPHAWAILEHSLPLSKAIANILVFINAHLACNYANEVAVVASHCQKAAWLY 79
Query: 62 ---------TGYNSCDYVYDSSSTGNQSVGNGRMP--SLCATLLQNLEEFMNKDEQLGKQ 110
T + D + +S N P + + +NL+E M D G
Sbjct: 80 PSHNAPRNRTADHDSDVAMNGASDTQPPETNKYRPFRIVEEQVTRNLKELM--DSTTG-D 136
Query: 111 EPEGRIACSLLSGSLSMALCYI-QRVFRSGLLHP-------------------------- 143
+ G ++ ++L+G+L++AL + +R H
Sbjct: 137 DLRGNMS-TMLAGALTLALSHTNRRALAWAEEHGGTNNEDAAADGNGNGNGNGNGNGHGG 195
Query: 144 ------------------QPRILCLQ--GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 183
Q RIL + GS D QY+ IMN+IF+ QR +PID C L
Sbjct: 196 GTSASVNRYSASNEDERLQSRILVISVSGSTDAAHQYIPIMNSIFACQRLNIPIDVCKLS 255
Query: 184 AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCF 243
++ FLQQAS T GV+ + GL QYL+ F D SR L LP V VDFRA+CF
Sbjct: 256 G-DAVFLQQASDATKGVYMALAEPRGLLQYLMMAFLPDQRSRRHLVLPTRVDVDFRAACF 314
Query: 244 CHKNTIDMGYICSVCLSIYCKHL--KKCSTCGS 274
CH+ +D+G++CS+CLSI+C C TCG+
Sbjct: 315 CHRRVVDVGFVCSICLSIFCGPPPGSDCMTCGT 347
>gi|346972888|gb|EGY16340.1| RNA polymerase II transcription factor B subunit 4 [Verticillium
dahliae VdLs.17]
Length = 398
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 157/324 (48%), Gaps = 62/324 (19%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
+ SL V+LD NP WS+ S L S+ L++VL +LNA L + NQV VIA+ N
Sbjct: 17 ETASLSTVILDVNPRAWSALSDVLPISKALSNVLIYLNANLAFSNTNQVAVIASHTNRAV 76
Query: 69 YVYDS--------SSTGNQSVGNG-----RMPSLCA-TLLQNLEEFMNKD-EQLGKQEPE 113
++Y + S+ G+ ++ + ++PS T +E+ + + ++L + E
Sbjct: 77 WLYPTKPEPSNVPSTDGDVAMSDAPPKKSKVPSANKFTQFAQVEDAVLRSLKKLLDETTE 136
Query: 114 GRIACSL--LSGSLSMALCYIQRV-------FRSGLLHP--------QPRILCLQGSPDG 156
+ C+ LSG+L++AL +I +V S P IL + S
Sbjct: 137 ADLDCTTTQLSGALTLALAHINKVNLSYTASLSSDTAKPMTTAAPGLSSHILVVSVSDSD 196
Query: 157 PEQYVAIMNAIFSAQRSMVPIDSCYLG---------------------AQNSAFLQQASY 195
P QY++ MNA+F+A + +PID L A +S+FLQQAS+
Sbjct: 197 PSQYISTMNAVFAAAHASIPIDVLSLSPATAKQTTATQSTDPNDPHKPASSSSFLQQASH 256
Query: 196 ITGGVHHKPQQLDGLFQYLLTIFG---TDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMG 252
IT G +P GL YL FG D +R L P VDFRA+CFCH ID G
Sbjct: 257 ITNGTFLEPPSPLGLLAYL--TFGLAVADTRARAALVPPTHHTVDFRAACFCHGRVIDTG 314
Query: 253 YICSVCLSIYCK--HLKKCSTCGS 274
++CSVCLSI+C C TCG+
Sbjct: 315 FVCSVCLSIFCSVPEGADCLTCGT 338
>gi|322709828|gb|EFZ01403.1| transcription factor TFIIH subunit Tfb4, putative [Metarhizium
anisopliae ARSEF 23]
Length = 358
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 150/302 (49%), Gaps = 47/302 (15%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W++ + LS S+ + ++L F+NA L + +NQV ++A N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAALDNVLSISKAIANILVFVNAHLAFSNVNQVAIVAAHVNRAVWLY 79
Query: 72 ------------------DSSSTGNQSVGNG--RMPSLCATLLQNLEEFMNKDEQLGKQE 111
D SS ++ N + + +L ++++ M++ E
Sbjct: 80 PTPPQTSPKDTSDDVHMNDVSSESPRNSANKYPQFAQIETAVLGSMQKLMSE-----TTE 134
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFR------SGLLH-PQP----------RILCLQGSP 154
+ + LSG+L++ALC+I + + S L QP RIL + S
Sbjct: 135 QDLEATTTQLSGALTLALCHINKASQALSGASSSLAEVAQPSANAAPPMKGRILVVSVSD 194
Query: 155 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 214
P QY+ MNA+F+A + V ID+ L N FLQQA + T G+ GL YL
Sbjct: 195 SEPTQYIPTMNAVFAAAHAQVAIDTLSLSG-NPTFLQQACFNTNGIFLAAANPKGLLTYL 253
Query: 215 LTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTC 272
+ D +R L P VDFRA+CFCH +D G+ICS+CLSI+C+ +C TC
Sbjct: 254 MFGLIADTEARQSLITPTHDTVDFRAACFCHGKVVDRGFICSICLSIFCELPENAECLTC 313
Query: 273 GS 274
G+
Sbjct: 314 GT 315
>gi|226294041|gb|EEH49461.1| RNA polymerase II transcription factor B subunit 4
[Paracoccidioides brasiliensis Pb18]
Length = 408
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/353 (30%), Positives = 161/353 (45%), Gaps = 88/353 (24%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP+ W+ S+L S + ++L F+NA L N N+V V+A+ N ++Y
Sbjct: 19 SLLTVILDTNPYAWALLESTLPLSAAIANLLVFINAHLACNYANKVAVVASHCNHAAWLY 78
Query: 72 DSSSTGNQS-------------VGNGRMPSL---------CATLLQNLEEFMNKDEQLGK 109
+ ST + S NG+ PS + F+ +EQL +
Sbjct: 79 PTPSTPSISQSKAIQLDADGDITMNGQ-PSTEPEPENQQQSQSPFNKYRPFLLVEEQLTR 137
Query: 110 Q-------EPEGRIACS---LLSGSLSMALCYIQR-----VFRSGLLHPQPR-------- 146
P + + +L+G+L++AL +I R G +P P
Sbjct: 138 NLHCLLSATPPSAVTSTTSTMLAGALTLALSHINRESIAYAEAHGAANPDPTSSTTGPAT 197
Query: 147 -----------------------------------ILCLQGSPDGPEQYVAIMNAIFSAQ 171
I+ L + + Y+ IMN+IF+ Q
Sbjct: 198 STASGLPPPPNSTTADPTSAAANPLNPTALQSRILIISLSNNTHSAQHYIPIMNSIFACQ 257
Query: 172 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ-QLDGLFQYLLTIFGTDLHSRNFLQL 230
R +PID L A ++AFLQQAS TGG++ G QYL+ F D +R L L
Sbjct: 258 RLHIPIDIIKL-AGDAAFLQQASDATGGIYIPINAHPAGFLQYLMLGFLPDQRARAHLIL 316
Query: 231 PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL---KKCSTCGSVFGQAQ 280
P V VDFRA+CFCH+ +D+G++CS+CLSI+C+ L +C TCG+ G +
Sbjct: 317 PSRVDVDFRAACFCHRKVVDVGFVCSICLSIFCEPLGGEGECLTCGTRLGMVE 369
>gi|302413233|ref|XP_003004449.1| RNA polymerase II transcription factor B subunit 4 [Verticillium
albo-atrum VaMs.102]
gi|261357025|gb|EEY19453.1| RNA polymerase II transcription factor B subunit 4 [Verticillium
albo-atrum VaMs.102]
Length = 384
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 157/324 (48%), Gaps = 62/324 (19%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
+ SL V+LD NP WS+ S L S+ L++VL +LNA L + NQV VIA+ N
Sbjct: 17 ETASLCTVILDVNPRAWSALSDVLPISKALSNVLIYLNANLAFSNTNQVAVIASHTNRAV 76
Query: 69 YVYDS--------SSTGNQSVGNG-----RMPSLCA-TLLQNLEEFMNKD-EQLGKQEPE 113
++Y + S+ G+ ++ + ++PS T +E+ + + ++L + E
Sbjct: 77 WLYPTKSEPSNTPSTDGDVAMSDAPPKKAKVPSANKFTQFAQVEDAVLRSLKKLLDETTE 136
Query: 114 GRIACSL--LSGSLSMALCYIQRV-------FRSGLLHP--------QPRILCLQGSPDG 156
+ C+ LSG+L++AL +I +V S P IL + S
Sbjct: 137 ADLDCTTTQLSGALTLALAHINKVNLSYTASLSSDTAKPMTTAAPGLSSHILVVSVSDSD 196
Query: 157 PEQYVAIMNAIFSAQRSMVPIDSCYLG---------------------AQNSAFLQQASY 195
P QY++ MNA+F+A + +PID L A +S+FLQQAS+
Sbjct: 197 PSQYISTMNAVFAAAHASIPIDVLSLSPATAKQTAAAQTTDPNDPHKSASSSSFLQQASH 256
Query: 196 ITGGVHHKPQQLDGLFQYLLTIFG---TDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMG 252
IT G +P GL YL FG D +R L P VDFRA+CFCH ID G
Sbjct: 257 ITNGTFLEPPSPLGLLAYL--TFGLAVADTRARAALVPPTHHTVDFRAACFCHGRVIDTG 314
Query: 253 YICSVCLSIYCK--HLKKCSTCGS 274
++CSVCLSI+C C TCG+
Sbjct: 315 FVCSVCLSIFCSVPEGADCLTCGT 338
>gi|410976500|ref|XP_003994658.1| PREDICTED: general transcription factor IIH subunit 3 [Felis catus]
Length = 407
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/336 (30%), Positives = 160/336 (47%), Gaps = 74/336 (22%)
Query: 8 LYSDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIAT 62
L D+++L+V+++DTNP +W L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 60 LVEDELNLLVIIVDTNPIWWGKQGLKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIAS 119
Query: 63 GYNSCDYVYDSSS---------TGNQSV-------GNGRMPSLCA---TLLQNLEEFMNK 103
++Y + GN S +G+ A + + +++ M K
Sbjct: 120 HIQESRFLYPGKNGRLGDFFGDPGNPSSEFSPSGSKDGKYELFTAANEVIAEEIKDLMTK 179
Query: 104 DEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS-----------------------GL 140
+ G+ +LL+GSL+ ALCYI R+ + +
Sbjct: 180 SDIKGQHTE------TLLAGSLAKALCYIHRMNKEVKDNQEMKSRILFQAPNAPMSMPNI 233
Query: 141 LHPQPRILC-----------LQGSPDGPEQYVAIMNAIFSA------QRSM---VPIDSC 180
LH C L+G+ D Y ++ A RS+ + ID+C
Sbjct: 234 LHVGAAACCSERPWALGTGRLEGAGDSTAFYRLCDRSLAKAWVLQLQMRSIYLNILIDAC 293
Query: 181 YLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRA 240
L + +S LQQA ITGG++ K Q+ L QYLL +F D R+ L LP P+ VD+RA
Sbjct: 294 VLDS-DSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPIHVDYRA 352
Query: 241 SCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 353 ACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 388
>gi|67515713|ref|XP_657742.1| hypothetical protein AN0138.2 [Aspergillus nidulans FGSC A4]
gi|40746160|gb|EAA65316.1| hypothetical protein AN0138.2 [Aspergillus nidulans FGSC A4]
Length = 384
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 151/330 (45%), Gaps = 74/330 (22%)
Query: 18 VLLDTNPFFWS------SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
V++DTNP W+ + L FS L ++L FLNA L N N+V V+A+ + ++Y
Sbjct: 16 VIIDTNPHAWALLEQNEKNQLPFSTALANILVFLNAHLACNYANEVAVVASHTHKAAWLY 75
Query: 72 DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEP----EGRI----------- 116
S ++ S + ++ + K Q+ K P E ++
Sbjct: 76 PSPNSPTTSADSDGDVTMSNNNHMSTGGGSGKPSQVNKYRPFRIVEEQVTSNLRHLVDST 135
Query: 117 --------ACSLLSGSLSMALCYIQR----------------VFRSGL------------ 140
A ++++G+L++AL +I R RSG
Sbjct: 136 NRDDLDSGASTMMAGALTLALSHINRRTIAWAEAHGGGDASSFSRSGDPDTSTTSMIARR 195
Query: 141 --------------LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 186
L + I+ + + QY+ IMN IF+ QR +PID C L +
Sbjct: 196 STTTTATNDGAAEGLQSRILIISVSSATGSAHQYIPIMNGIFACQRLHIPIDVCKLSG-D 254
Query: 187 SAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHK 246
+ FLQQAS T G++ + GL QYL+ F D SR L LP V VDFRA+CFCH+
Sbjct: 255 AVFLQQASDATKGIYMSLSEPRGLLQYLMMAFLPDQRSRKHLILPTRVDVDFRAACFCHR 314
Query: 247 NTIDMGYICSVCLSIYCKHLKK--CSTCGS 274
+D+G++CS+CLSI+C+ + C TCG+
Sbjct: 315 RVVDIGFVCSICLSIFCEPPENGDCLTCGT 344
>gi|46138695|ref|XP_391038.1| hypothetical protein FG10862.1 [Gibberella zeae PH-1]
gi|408390605|gb|EKJ69997.1| hypothetical protein FPSE_09842 [Fusarium pseudograminearum CS3096]
Length = 355
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 150/298 (50%), Gaps = 35/298 (11%)
Query: 11 DDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D SL+ ++LDTNP W+S S L S+ + ++L F+NA L + N+V +IA + +
Sbjct: 17 DTPSLLSIVLDTNPRAWASLNSLLPLSRAIANILVFVNAHLAFSNANRVALIAAHVDRAE 76
Query: 69 YVYDSSSTGNQSV-GNGRM--PSLCATLLQNLEEFMNKD-------EQLGKQEPEGRIAC 118
++Y + ++ G+ M S T EF + +L Q E ++
Sbjct: 77 WLYPTPPKPSRDASGDVEMNDASQTQTSANKFPEFAQIETAVLSGIRKLMDQTKEADLSA 136
Query: 119 SL--LSGSLSMALCYIQRVFRS-------------GLLHPQP-----RILCLQGSPDGPE 158
+ +SG+L++ALC+I + ++ G P RIL + S P
Sbjct: 137 TTTQISGALTLALCHINKAAQALCSPTANLEDSHKGSSSTSPPTVRGRILVISVSDSEPS 196
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIF 218
QY+ MNA+F+A + V ID+ L + + FL+QA Y TGG + GL YL+
Sbjct: 197 QYIPTMNAVFAAAHTQVAIDTLSLTGEPT-FLEQACYNTGGTYLAATHPQGLLNYLMFGL 255
Query: 219 GTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK--KCSTCGS 274
+D +R L VDFRA+CFCH +D G++CS+CLSI+C+ + +C TCG+
Sbjct: 256 MSDTEAREALINSVHDTVDFRAACFCHGRVVDTGFVCSICLSIFCETPENSECFTCGT 313
>gi|258567552|ref|XP_002584520.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237905966|gb|EEP80367.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 398
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/329 (29%), Positives = 152/329 (46%), Gaps = 69/329 (20%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ +L S + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 20 SLLTIVLDTNPHAWALLEETLPLSTAVANLLVFINAHLACNYANKVAVVASHSQEARWLY 79
Query: 72 DSSSTGNQSVGNGRMPSLCATLLQN----------LEEFMNKDEQLGKQEPE-------- 113
+S+T + NG + T + + F +EQL + +
Sbjct: 80 PASTTSPSNSQNGSTDTDGDTNMSSSNPPPTQSNKYRPFRIVEEQLTRNLKDLLSTTSPA 139
Query: 114 --GRIACSLLSGSLSMALCYIQR-----------------------VFRSGLLHPQP--- 145
++++G+L++AL +I R + L P P
Sbjct: 140 SLSSTTSTMMAGALTLALSHINRETIVYAETHGASSAKLDADPSNPAPTASALPPPPGST 199
Query: 146 ----------------RILCLQ--GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 187
RIL + + QY+ IMN+IF+ QR +PID C L ++
Sbjct: 200 FDPSSNTNRNLSGLQSRILIISVSSATGSAHQYIPIMNSIFACQRLHIPIDICKLSG-DA 258
Query: 188 AFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKN 247
FLQQA T G++ G QYL+ F D SR+ L LP V VDFRA+CFCH+
Sbjct: 259 VFLQQACDATRGIYVPVDHPLGFLQYLMVAFLPDQRSRSHLILPTRVDVDFRAACFCHRK 318
Query: 248 TIDMGYICSVCLSIYCKHLK--KCSTCGS 274
+D+G++CS+CLSI+C+ + C TCG+
Sbjct: 319 VVDVGFVCSICLSIFCEPPEGADCLTCGT 347
>gi|443727474|gb|ELU14215.1| hypothetical protein CAPTEDRAFT_169977 [Capitella teleta]
Length = 299
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/285 (35%), Positives = 158/285 (55%), Gaps = 30/285 (10%)
Query: 14 SLVVVLLDTNPFFWSSSSLS------FSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
S +++++DT+P +W L S+ L ++ F +A L L+ NQ+VV+A N
Sbjct: 8 SCLILVIDTSPVWWGKKLLKQEYGRILSESLDALMVFCSAHLMLHHQNQLVVLAAHTNCS 67
Query: 68 DYVY------DSSSTGN-----QSVGNGRMPSLCATLLQN-LEEFMNKDEQLGKQEPEGR 115
++ D++ G+ QS G + + +++++ L + + D G E
Sbjct: 68 QVIFPSPNAHDAAMNGDAAFRGQSDGKYEVFAEVQSIIKDQLTDLILHD---GGGEVHSD 124
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHP---QPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
L+G+L+ ALCY+ ++ + GL + R+L +QGS D P QY+ +MN IF+AQ+
Sbjct: 125 CL---LAGALARALCYVNKINK-GLPDGDAMRSRVLVVQGSEDNPLQYMDLMNIIFTAQK 180
Query: 173 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH-SRNFLQLP 231
V ID+C + ++S LQQ ITGG + K Q L QYLL +F + +R L LP
Sbjct: 181 QNVIIDACIMD-EDSPILQQVCDITGGFYLKTPQPSALLQYLLWVFLLEPGGAREKLNLP 239
Query: 232 KPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
V VD+RA+CFCH+N I+ GY+CSVCLS++C CSTC + F
Sbjct: 240 AKVHVDYRAACFCHRNLINTGYVCSVCLSVFCSFSPICSTCQTTF 284
>gi|322698540|gb|EFY90309.1| transcription factor TFIIH subunit Tfb4, putative [Metarhizium
acridum CQMa 102]
Length = 358
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 148/302 (49%), Gaps = 47/302 (15%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W+ L S+ + ++L F+NA L + +NQV V+A N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAVLDDVLPISKAIANILVFVNAHLAFSNVNQVAVVAAHVNRAVWLY 79
Query: 72 ---------DSS-----------STGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQE 111
D+S S N + + + +L ++++ M++ E
Sbjct: 80 PTPPQTSPKDTSGDVHMIDVPGDSPRNSANKYPQFAQIETAVLASMQKLMSE-----TTE 134
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFR-----SGLLH--PQP----------RILCLQGSP 154
+ + LSG+L++ALC+I + + SG L QP RIL + S
Sbjct: 135 QDLEATTTQLSGALTLALCHINKASQALSGASGSLAEVAQPSANAALPMKGRILVVSVSD 194
Query: 155 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 214
P QY+ IMNA+F+A + V ID+ L N FLQQA + T G GL YL
Sbjct: 195 SEPSQYIPIMNAVFAAAHAQVAIDTLCLSG-NPTFLQQACFNTNGTFLAAANPKGLLAYL 253
Query: 215 LTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTC 272
+ D +R L P VDFRA+CFCH +D G++CS+CLSI+C+ +C TC
Sbjct: 254 MFGLIADTEARQSLITPTHDTVDFRAACFCHGKVVDRGFVCSICLSIFCELPENAECLTC 313
Query: 273 GS 274
G+
Sbjct: 314 GT 315
>gi|358396042|gb|EHK45429.1| hypothetical protein TRIATDRAFT_221909 [Trichoderma atroviride IMI
206040]
Length = 367
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 152/310 (49%), Gaps = 47/310 (15%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W++ S LS SQ ++++L F+NA L + NQV VIA N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAALESRLSLSQAISNILVFVNAHLAFSNTNQVAVIAAHVNRAVWLY 79
Query: 72 DSSSTGNQSV--------GNGRMPSLCA-TLLQNLEEFMNKDEQLGKQE----------- 111
+++ Q G+ +M + A T + NK Q + E
Sbjct: 80 PAAAAAAQKPLAAARDHSGDVQMQDVSAETNNSSSSPSANKYPQFAQIESSVFSSIQSLM 139
Query: 112 PEGRI-----ACSLLSGSLSMALCYIQRVFRS--------------GLLHPQP---RILC 149
E + + LSG+L++ALC I + ++ P P RI+
Sbjct: 140 AETTVQDLDQVTTQLSGALTLALCRINKASQALSASDTTLSNAAPVNSAAPPPVKSRIVV 199
Query: 150 LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDG 209
+ S P QY+ MNA+F+A + V ID+ L A +S FLQQA + T G+ K G
Sbjct: 200 ISVSDSEPSQYIPTMNAVFAAAHNQVAIDTIAL-AGDSTFLQQACFNTNGIFLKASNPQG 258
Query: 210 LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK-- 267
L YL+ D +R + P VDFR +CFCH +D G++CSVCLSI+C+ +
Sbjct: 259 LLTYLMFGLIPDTEARESIITPAHDTVDFRTACFCHGRVVDTGFVCSVCLSIFCEPPENA 318
Query: 268 KCSTCGSVFG 277
+C TCG+V
Sbjct: 319 ECLTCGTVLA 328
>gi|344300009|gb|EGW30349.1| hypothetical protein SPAPADRAFT_63205 [Spathaspora passalidarum
NRRL Y-27907]
Length = 367
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 160/354 (45%), Gaps = 65/354 (18%)
Query: 3 SAPSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
++ S+ SD+ SL+ ++LD +P W ++ + ++L FLNA L LN NQV I
Sbjct: 13 TSSSEAISDEPSLLTIILDISPLGWYKLRDLMTLEEMTKNLLVFLNAHLALNNSNQVAFI 72
Query: 61 ATGYNSCDYVY-------------DSSSTGNQSVGNG---RMPSLCATLLQNLEEFMNKD 104
A+ ++Y D +++ V G + + +L+ L EF+N
Sbjct: 73 ASSPKGSRFLYPNPAKSYQEVKVSDGATSARDFVNKGMYRQFRIVDKAVLEELNEFLN-- 130
Query: 105 EQLGKQEPEGRIA--CSLLSGSLSMALCYIQRVF-------------------------- 136
++ K + + +A S LSG+LSMAL Y R+
Sbjct: 131 -EINKDQDDTMLADPASKLSGALSMALTYTNRMLTLDQSITTTTASAIASTTSSSASAAS 189
Query: 137 -----------RSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG-A 184
S + RIL + + D +Y+ IMN IF+AQ+ + ID LG
Sbjct: 190 STATGAGGASSGSSSTSMKSRILVVSANDDNDVKYIPIMNTIFAAQKMKLSIDIIKLGDE 249
Query: 185 QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFC 244
+NS++LQQ S T G++ G+ Q L T + + R F+ LP V++RASCF
Sbjct: 250 ENSSYLQQPSDATNGIYLHLTDPRGIIQVLSTAYFIEPSLRPFIILPTNSNVNYRASCFI 309
Query: 245 HKNTIDMGYICSVCLSIY--CKHLKKCSTCGSVFGQAQTQ--SDEPSATNRKRK 294
+D+GY+CSVCL I KKC TC S F + + EP +KRK
Sbjct: 310 TGKAVDVGYVCSVCLCIMSIIPDSKKCPTCNSQFDERIIHQLTKEPEVVKKKRK 363
>gi|398392135|ref|XP_003849527.1| hypothetical protein MYCGRDRAFT_75897 [Zymoseptoria tritici IPO323]
gi|339469404|gb|EGP84503.1| hypothetical protein MYCGRDRAFT_75897 [Zymoseptoria tritici IPO323]
Length = 386
Score = 137 bits (344), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 102/331 (30%), Positives = 164/331 (49%), Gaps = 65/331 (19%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SLS S+ + ++L F+NA + +N N+V V+A+ +++Y
Sbjct: 20 SLLTIILDTNPHAWALLEDSLSLSKVVVNLLVFVNAHIAINHANRVAVLASHSERAEWLY 79
Query: 72 DSSSTGNQSVGNG---RMPSLCATL------------------LQNLEEFMNKDEQLGKQ 110
++ + + NG M AT+ Q N +L ++
Sbjct: 80 PTAPSSHSHRTNGDDVEMADSTATMNGGANHPPPDDPNKYRPFAQIEHALANNLRKLIER 139
Query: 111 EPEGRIACS---LLSGSLSMALCYIQRVFRS----------------------------- 138
++ + +++G+L+MAL YI + +
Sbjct: 140 TSTSSLSATPATMMAGALTMALSYISKQSAALPTTTSSAQFNYSDPNAGPAGGNDLAADN 199
Query: 139 ----GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQAS 194
LL RIL L S D +QY+ IMN+IF+ QR +PID L A ++ FLQQA+
Sbjct: 200 KGPNNLLGLTSRILILSVSGDLADQYIPIMNSIFACQRLSIPIDILKL-AGDTVFLQQAA 258
Query: 195 YITGGVHH--KPQQLDGLFQYLLTIFGTDLHSRNFLQLP-KPVGVDFRASCFCHKNTIDM 251
TGG++ Q G QYL+ + D +RN L +P + GVDFRA+CFCH+ +D+
Sbjct: 259 DATGGIYMALDEQSRAGFLQYLMFAYLPDQTARNHLIMPGESEGVDFRAACFCHRRVVDI 318
Query: 252 GYICSVCLSIYCKHLK--KCSTCGSVFGQAQ 280
G++CS+CLSI+C+ ++ +C TCGS A
Sbjct: 319 GFVCSICLSIFCEPMQDGQCLTCGSHLSMAN 349
>gi|255545470|ref|XP_002513795.1| hypothetical protein RCOM_1031970 [Ricinus communis]
gi|223546881|gb|EEF48378.1| hypothetical protein RCOM_1031970 [Ricinus communis]
Length = 159
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 83/201 (41%), Positives = 106/201 (52%), Gaps = 51/201 (25%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEF 100
VLAFLN+IL NQL+QV+VI +GYNSCDYVYDSS N+S +G++P+L + LLQ LE+F
Sbjct: 5 VLAFLNSILLFNQLSQVLVIGSGYNSCDYVYDSSLIANRSSEDGKIPTLYSELLQKLEDF 64
Query: 101 MNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQY 160
+ +DE+LGK E L +L + ++ LL P
Sbjct: 65 IIRDEKLGKGE-------EFLKETLPLHCSQDPCLWHFALLIP----------------- 100
Query: 161 VAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGT 220
+ + VPIDSCY+G NSAFLQQ T+ T
Sbjct: 101 ----DTMVRKNEGKVPIDSCYVGGHNSAFLQQ-----------------------TVLAT 133
Query: 221 DLHSRNFLQLPKPVGVDFRAS 241
DLHSRN LQLP+P VDFRAS
Sbjct: 134 DLHSRNCLQLPRPADVDFRAS 154
>gi|226468218|emb|CAX69786.1| putative general transcription factor IIH [Schistosoma japonicum]
Length = 317
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 152/314 (48%), Gaps = 50/314 (15%)
Query: 8 LYSDDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+ S+ SL++++LD P W +S + L F N+ L L+ N+V VI +
Sbjct: 1 MSSEVRSLLLLILDMTPASWGFCTSDFGLPNCIEAALGFANSHLMLSSFNEVAVIGVTPS 60
Query: 66 SCDYVYDS-SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
++Y S S T + +G+ +L + + N ++ D +I +L+G+
Sbjct: 61 QIKFIYPSHSETLVGASNDGQNDAL--SCMNNTVRQLSLDLVTSCSSTSTQI---VLAGA 115
Query: 125 LSMALCYIQR--------------------VFRSGLLHPQPRILCLQGSPDGPEQYVAIM 164
+ LCY R F G RIL ++ S D QY+++M
Sbjct: 116 IIKGLCYYLRRCRELQPSTRHLDDPSETTMEFSEGNDKISARILIIKASDDSTSQYLSLM 175
Query: 165 NAIFSAQRSMVPIDSCYL----------------GAQNSAFLQQASYITGGVHHKPQQLD 208
N++F+AQ+ VPID+C L +S+ LQQA+ +TGG++ + ++
Sbjct: 176 NSVFTAQKLHVPIDTCVLPLPRQLDNLNGRRSISSPGHSSLLQQAADLTGGIYLQIPRVS 235
Query: 209 GLFQYLLTIFGTDLHSRNFLQLPKP------VGVDFRASCFCHKNTIDMGYICSVCLSIY 262
GL QYLL++F R L LP GVDFRA+CFCHK ID+GY+CS+CLS++
Sbjct: 236 GLLQYLLSVFLPSSKMRTSLILPDSRSSGLSFGVDFRAACFCHKRLIDIGYVCSICLSVF 295
Query: 263 CKHLKKCSTCGSVF 276
C+ C TC + F
Sbjct: 296 CEFNPICPTCNTPF 309
>gi|303314233|ref|XP_003067125.1| Transcription factor Tfb4 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106793|gb|EER24980.1| Transcription factor Tfb4 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037386|gb|EFW19323.1| transcription factor TFIIH subunit Tfb4 [Coccidioides posadasii
str. Silveira]
Length = 395
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/335 (29%), Positives = 150/335 (44%), Gaps = 81/335 (24%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ +L S + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 17 SLLTIVLDTNPHAWALLEDTLPLSTAVANLLVFVNAHLACNYANKVAVVASHSQEARWLY 76
Query: 72 D-----------------------SSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ-- 106
SS+TG N P + +EE + ++ +
Sbjct: 77 PTPTTASSNTNQDEPADTDGDVAMSSTTGESPASNKYRP------FRIVEEQLTRNLKAL 130
Query: 107 LGKQEPEG--RIACSLLSGSLSMALCYIQRV------------FRSGLLHPQPRILCL-- 150
L P ++++G+L++AL +I R S +P P L
Sbjct: 131 LATTSPASVSSATSTMMAGALTLALSHINRETIAYAETHGTSRLDSDPSNPTPTATGLPP 190
Query: 151 -------------QGSPDG----------------PEQYVAIMNAIFSAQRSMVPIDSCY 181
+ SP G QY+ IMN+IF+ QR +PID C
Sbjct: 191 PPGSHPDPTSQSSRSSPTGLQSRILIISVSSATGSAHQYIPIMNSIFACQRLHIPIDICK 250
Query: 182 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 241
L ++ FLQQA T G++ G QYL+ F D SR L LP V VDFRA+
Sbjct: 251 LSG-DAVFLQQACDATRGIYVPVDHPRGFLQYLMVAFLPDQRSRRHLILPTRVDVDFRAA 309
Query: 242 CFCHKNTIDMGYICSVCLSIYCKHLK--KCSTCGS 274
CFCH+ +D+G++CS+CLSI+C+ + C TCG+
Sbjct: 310 CFCHRKVVDVGFVCSICLSIFCEPPEGADCLTCGT 344
>gi|226467818|emb|CAX69785.1| putative general transcription factor IIH [Schistosoma japonicum]
Length = 317
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 152/314 (48%), Gaps = 50/314 (15%)
Query: 8 LYSDDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+ S+ SL++++LD P W +S + L F N+ L L+ N+V VI +
Sbjct: 1 MSSEVRSLLLLILDMTPASWGFCTSDFGLPNCIEAALGFANSHLMLSSFNEVAVIGVTPS 60
Query: 66 SCDYVYDS-SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
++Y S S T + +G+ +L + + N ++ D +I +L+G+
Sbjct: 61 QIKFIYPSHSETLVGASNDGQNDAL--SCMNNTVRQLSLDLVTSCSSTSTQI---VLAGA 115
Query: 125 LSMALCYIQR--------------------VFRSGLLHPQPRILCLQGSPDGPEQYVAIM 164
+ LCY R F G RIL ++ S D QY+++M
Sbjct: 116 IIKGLCYYLRRCRELQPSTRHLDDPSETTMEFSEGNDKISARILIIKASDDSTSQYLSLM 175
Query: 165 NAIFSAQRSMVPIDSCYL----------------GAQNSAFLQQASYITGGVHHKPQQLD 208
N++F+AQ+ VPID+C L +S+ LQQA+ +TGG++ + ++
Sbjct: 176 NSVFTAQKLHVPIDTCVLPLPRQLDNLNGRRSISSPGHSSLLQQAADLTGGIYLQIPRVS 235
Query: 209 GLFQYLLTIFGTDLHSRNFLQLPKP------VGVDFRASCFCHKNTIDMGYICSVCLSIY 262
GL QYLL++F R L LP GVDFRA+CFCH+ ID+GY+CS+CLS++
Sbjct: 236 GLLQYLLSVFLPSSKMRTSLILPDSRSSGLSFGVDFRAACFCHRRLIDIGYVCSICLSVF 295
Query: 263 CKHLKKCSTCGSVF 276
C+ C TC + F
Sbjct: 296 CEFNPICPTCNTPF 309
>gi|225712364|gb|ACO12028.1| General transcription factor IIH subunit 3 [Lepeophtheirus
salmonis]
gi|290562788|gb|ADD38789.1| General transcription factor IIH subunit 3 [Lepeophtheirus
salmonis]
Length = 305
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/299 (33%), Positives = 152/299 (50%), Gaps = 29/299 (9%)
Query: 15 LVVVLLDTNP----FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
L+++++D NP F ++L+ L ++L F NA L L+ N + + + + ++
Sbjct: 17 LLIIVMDMNPNQKLFLHDPTALT--SVLDNLLCFANAHLMLHPSNALATLGSMASGSYFL 74
Query: 71 Y---DSSSTGN---QSVGNGRMPSLCATLLQN-LEEFMNKDEQLGKQEPEGRIACSLLSG 123
Y D + N Q G + +L T +++ E + + + Q S LSG
Sbjct: 75 YPPPDDPAADNEIRQLDGQYELFTLVETTVRSKFIELLQSEAGISSQTD------SPLSG 128
Query: 124 SLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 183
SL+MAL YI R R + RIL + S D QY+ MN F+AQ+ V +D+C L
Sbjct: 129 SLAMALSYINRR-RKENMDLSARILVITASGDTASQYMNYMNVFFTAQKLDVLLDTCMLQ 187
Query: 184 AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCF 243
+S LQQ + ITGG++ L Q+LL IF R L LP VDFRA+CF
Sbjct: 188 I-DSPLLQQGADITGGMYFNVPDNAALLQFLLWIFLPSAEMRPQLGLPSANKVDFRAACF 246
Query: 244 CHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF--------GQAQTQSDEPSATNRKRK 294
CH+ +D+G++CSVCLSI+CK C+TC ++F G+ + S++ KRK
Sbjct: 247 CHRQLVDIGFVCSVCLSIFCKFSPICTTCQTIFRVPPPLMGGKKKKSHAHGSSSVLKRK 305
>gi|320167472|gb|EFW44371.1| general transcription factor IIH [Capsaspora owczarzaki ATCC 30864]
Length = 381
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 100/171 (58%), Gaps = 6/171 (3%)
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP----QPRILCLQGSPDGPEQYVAIMN 165
+ P S L SLS+ALC+I + R+ L P + RIL + + D P YV +MN
Sbjct: 201 KPPMSSAMTSQLVSSLSVALCHINKTRRA--LPPGVVCRSRILVVHAAEDVPAHYVQLMN 258
Query: 166 AIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSR 225
IF+AQ+ V ID+ L +S FLQQA +T G + K Q D L Q L+ D +R
Sbjct: 259 TIFAAQKLGVIIDALILTPDDSGFLQQAVDLTKGAYIKLQSNDDLVQTLMMFGLADRAAR 318
Query: 226 NFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
L LP+P VD+R++CFCH+ +D+G++CSVCLSI+C C TCG+ F
Sbjct: 319 ELLILPQPTVVDYRSACFCHRRIVDVGFVCSVCLSIFCDQRGLCPTCGTRF 369
>gi|240274744|gb|EER38259.1| RNA polymerase II transcription factor B subunit 4 [Ajellomyces
capsulatus H143]
Length = 412
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 159/346 (45%), Gaps = 86/346 (24%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTIILDTNPHAWARLEPSLPLSAAIANLLVFINAHLACNYANKVAVVASHCHHAAWLY 79
Query: 72 DSSSTGNQSVGNGRMPSLCATLLQNL----------------EEFMNK-------DEQLG 108
+ ++ S PS A ++ EE +NK +EQL
Sbjct: 80 PTPASPKSSDSQTDAPSKDAPPDGDINMNGQQSSGQHQQAEQEEPLNKYRPFRLVEEQLT 139
Query: 109 KQ-------EPEGRIACS---LLSGSLSMALCYIQR-----------------------V 135
+ IA + L++G+L++AL +I R
Sbjct: 140 RNLHTLLSTTTAADIASTTSTLIAGALTLALSHINRETIAYAETHGTARPDGSTSGPANS 199
Query: 136 FRSGLLHP------------------QPRILC--LQGSPDGPEQYVAIMNAIFSAQRSMV 175
SGL P Q RIL L + Y+ IMN+IF+ QR +
Sbjct: 200 TASGLPPPPGTTASATTSHLPNPSALQSRILIISLSSTTHSAHHYIPIMNSIFACQRLHI 259
Query: 176 PIDSCYLGAQNSAFLQQASYITGGVH-HKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPV 234
PID L A ++AFLQQAS T G++ G QYL+ F D +R+ L LP V
Sbjct: 260 PIDILKL-AGDAAFLQQASDATRGIYIPATSHPAGFLQYLMLGFLPDQRARSHLVLPSRV 318
Query: 235 GVDFRASCFCHKNTIDMGYICSVCLSIYCKHL------KKCSTCGS 274
VDFRA+CFCH+ +D+G++CS+CLSI+C+ L +C TCGS
Sbjct: 319 DVDFRAACFCHRRVVDVGFVCSICLSIFCEPLAGVDGVAECLTCGS 364
>gi|154286010|ref|XP_001543800.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407441|gb|EDN02982.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 413
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 157/347 (45%), Gaps = 87/347 (25%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTIILDTNPHAWARLEPSLPLSAAIANLLVFINAHLACNYANKVAVVASHCHHAAWLY 79
Query: 72 DSSSTGNQSVGNGRMPSLCAT----LLQNLEEFMNKDEQLGKQEPEGR------------ 115
+ ++ S PS A + N ++ + +Q ++EP +
Sbjct: 80 PTPASPKSSDSQTDAPSKDAPPDGDISMNDQQSAGQHQQAEQEEPLNKYRPFRLVEEQLT 139
Query: 116 -----------------IACSLLSGSLSMALCYIQR------------------------ 134
+L++G+L++AL +I R
Sbjct: 140 RNLHTLLSTTTAADIASTTSTLIAGALTLALSHINRETIAYAETHGTARPDGSSTSGPAN 199
Query: 135 VFRSGLLHP------------------QPRILC--LQGSPDGPEQYVAIMNAIFSAQRSM 174
SGL P Q RIL L + Y+ IMN+IF+ QR
Sbjct: 200 STASGLPPPPGTTASATTSHLPNPSALQSRILIISLSSTTHSAHHYIPIMNSIFACQRLH 259
Query: 175 VPIDSCYLGAQNSAFLQQASYITGGVH-HKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKP 233
+PID L A ++AFLQQAS T G++ G QYL+ F D +R+ L LP
Sbjct: 260 IPIDILKL-AGDAAFLQQASDATRGIYIPATSHPAGFLQYLMLGFLPDQRARSHLVLPSR 318
Query: 234 VGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL------KKCSTCGS 274
V VDFRA+CFCH+ +D+G++CS+CLSI+C+ L +C TCGS
Sbjct: 319 VDVDFRAACFCHRRVVDVGFVCSICLSIFCEPLGGVDGVAECLTCGS 365
>gi|325094096|gb|EGC47406.1| RNA polymerase II transcription factor B subunit 4 [Ajellomyces
capsulatus H88]
Length = 412
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 159/346 (45%), Gaps = 86/346 (24%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTIILDTNPHAWARLEPSLPLSAAIANLLVFINAHLACNYANKVAVVASHCHHAAWLY 79
Query: 72 DSSSTGNQSVGNGRMPSLCATLLQNL----------------EEFMNK-------DEQLG 108
+ ++ S PS A ++ EE +NK +EQL
Sbjct: 80 PTPASPKSSDSQTDAPSKDAPPDGDINMNGQQSSGQHQQAEQEEPLNKYRPFRLVEEQLT 139
Query: 109 KQ-------EPEGRIACS---LLSGSLSMALCYIQR-----------------------V 135
+ IA + L++G+L++AL +I R
Sbjct: 140 RNLHTLLSTTTAADIASTTSTLIAGALTLALSHINRETIAYAETHGTARPDGSTSGPANS 199
Query: 136 FRSGLLHP------------------QPRILC--LQGSPDGPEQYVAIMNAIFSAQRSMV 175
SGL P Q RIL L + Y+ IMN+IF+ QR +
Sbjct: 200 TASGLPPPPGTTASATTSHLPNPSALQSRILIISLSSTTHSAHHYIPIMNSIFACQRLHI 259
Query: 176 PIDSCYLGAQNSAFLQQASYITGGVH-HKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPV 234
PID L A ++AFLQQAS T G++ G QYL+ F D +R+ L LP V
Sbjct: 260 PIDILKL-AGDAAFLQQASDATRGIYIPATPHPAGFLQYLMLGFLPDQRARSHLVLPSRV 318
Query: 235 GVDFRASCFCHKNTIDMGYICSVCLSIYCKHL------KKCSTCGS 274
VDFRA+CFCH+ +D+G++CS+CLSI+C+ L +C TCGS
Sbjct: 319 DVDFRAACFCHRRVVDVGFVCSICLSIFCEPLAGVDGVAECLTCGS 364
>gi|255070041|ref|XP_002507102.1| RNA polymerase II transcription factor B subunit 4 [Micromonas sp.
RCC299]
gi|226522377|gb|ACO68360.1| RNA polymerase II transcription factor B subunit 4 [Micromonas sp.
RCC299]
Length = 291
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 130/254 (51%), Gaps = 6/254 (2%)
Query: 28 SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMP 87
S L L ++ F++ L LN N +VV+A C Y+Y+S + + + P
Sbjct: 35 SDDGLGIMHTLRDLVLFISCYLALNLQNDLVVLALHNGDCHYLYESPKSKLRRGVRVQPP 94
Query: 88 --SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQP 145
+C ++ + + Q + + S L+ LSMALC+IQR+ +G
Sbjct: 95 VSDVCKEIITRIFRISSSPLQSPSGDASSSGSESPLAAGLSMALCHIQRL-GTGSFRGLR 153
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 205
RI CL SP QY+ +MN IF+AQ++ V IDS L +S L+QA+ +T G+H K Q
Sbjct: 154 RIFCLLRSPVSQRQYIPMMNVIFAAQQAFVTIDSYSLCDMHSDILEQAANMTNGLHRKLQ 213
Query: 206 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKH 265
+ L Q+LLT R+ L K GVDF+ CFCHK T+ G++CS CLSI C
Sbjct: 214 KDGELGQHLLTFSSWSQTCRHSLLPGKQCGVDFKTFCFCHKKTLQRGFVCSACLSISCVA 273
Query: 266 LK---KCSTCGSVF 276
LK C TC + F
Sbjct: 274 LKTGGDCMTCAANF 287
>gi|225558318|gb|EEH06602.1| RNA polymerase II transcription factor B subunit 4 [Ajellomyces
capsulatus G186AR]
Length = 412
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 159/346 (45%), Gaps = 86/346 (24%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ SL S + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 20 SLLTIILDTNPHAWARLEPSLPLSAAIANLLVFINAHLACNYANKVAVVASHCHHAAWLY 79
Query: 72 DSSSTGNQSVGNGRMPSLCATLLQNL----------------EEFMNK-------DEQLG 108
+ ++ S PS A ++ EE +NK +EQL
Sbjct: 80 PTPASPKSSDSQTDPPSKDAPPDGDINMNGQQSAGQYQQAEQEESLNKYRPFRLVEEQLT 139
Query: 109 KQ-------EPEGRIACS---LLSGSLSMALCYIQR-----------------------V 135
+ IA + L++G+L++AL +I R
Sbjct: 140 RNLHTLLSTTTAADIASTTSTLIAGALTLALSHINRETIAYAETHGTARPDGSTSGPANS 199
Query: 136 FRSGLLHP------------------QPRILC--LQGSPDGPEQYVAIMNAIFSAQRSMV 175
SGL P Q RIL L + Y+ IMN+IF+ QR +
Sbjct: 200 TASGLPPPPGTTASATTSHLPNPSALQSRILIISLSSTTHSAHHYIPIMNSIFACQRLHI 259
Query: 176 PIDSCYLGAQNSAFLQQASYITGGVH-HKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPV 234
PID L A ++AFLQQAS T G++ G QYL+ F D +R+ L LP V
Sbjct: 260 PIDILKL-AGDAAFLQQASDATRGIYIPATSHPAGFLQYLMLGFLPDQRARSHLVLPSRV 318
Query: 235 GVDFRASCFCHKNTIDMGYICSVCLSIYCKHL------KKCSTCGS 274
VDFRA+CFCH+ +D+G++CS+CLSI+C+ L +C TCGS
Sbjct: 319 DVDFRAACFCHRRVVDVGFVCSICLSIFCEPLAGVDGVAECLTCGS 364
>gi|119174356|ref|XP_001239539.1| hypothetical protein CIMG_09160 [Coccidioides immitis RS]
gi|392869735|gb|EAS28255.2| transcription factor tfb4 [Coccidioides immitis RS]
Length = 396
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 99/330 (30%), Positives = 151/330 (45%), Gaps = 70/330 (21%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W+ +L S + ++L F+NA L N N+V V+A+ ++Y
Sbjct: 17 SLLTIVLDTNPHAWALLEDTLPLSTAVANLLVFVNAHLACNYANKVAVVASHSQEARWLY 76
Query: 72 DSSSTG----NQ-------------SVGNGRMPSLCA-TLLQNLEEFMNKDEQ--LGKQE 111
+ +T NQ S G P+ + +EE + ++ + L
Sbjct: 77 PTPTTAPSNTNQDEPADTDGDVAMSSTTGGESPASNKYRPFRIVEEQLTRNLKALLATTS 136
Query: 112 PEG--RIACSLLSGSLSMALCYIQRV------------FRSGLLHPQPRILCL------- 150
P ++++G+L++AL +I R S +P P L
Sbjct: 137 PASVSSATSTMMAGALTLALSHINRETIAYAETHGTSRLDSDPSNPTPTATGLPPPPGSH 196
Query: 151 --------QGSPDG----------------PEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 186
SP G QY+ IMN+IF+ QR +PID C L +
Sbjct: 197 PDPTSQSSHSSPTGLQSRILIISVSSATGSAHQYIPIMNSIFACQRLHIPIDICKLSG-D 255
Query: 187 SAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHK 246
+ FLQQA T G++ G QYL+ F D SR L LP V VDFRA+CFCH+
Sbjct: 256 AVFLQQACDATRGIYVPVDHPRGFLQYLMVAFLPDQRSRRHLILPTRVDVDFRAACFCHR 315
Query: 247 NTIDMGYICSVCLSIYCKHLK--KCSTCGS 274
+D+G++CS+CLSI+C+ + C TCG+
Sbjct: 316 KVVDVGFVCSICLSIFCEPPEGADCLTCGT 345
>gi|388582433|gb|EIM22738.1| transcription factor Tfb4 [Wallemia sebi CBS 633.66]
Length = 272
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 106/183 (57%), Gaps = 18/183 (9%)
Query: 117 ACSLLSGSLSMALCYIQRVF----RSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
A S L+ +L+ +LC++ R +S RIL + S D P +YV++MN+IF+AQ+
Sbjct: 85 ASSTLASTLAQSLCHVNRKIVQESKSTF-----RILVVAASDDVPPEYVSLMNSIFAAQK 139
Query: 173 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 232
S + ID + N+ FLQQA+++TGG + + L QYL+ F R L P+
Sbjct: 140 SKIVIDVVQIYNCNTIFLQQAAHLTGGNFIQATDPESLVQYLIMAFLPSQPLRARLVQPR 199
Query: 233 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF---------GQAQTQS 283
VDFRA+CFCHK +D+ YICSVCLSI+C+ ++CSTC SVF G QT S
Sbjct: 200 SDKVDFRAACFCHKRIVDIAYICSVCLSIFCQPPQRCSTCNSVFPAKTLQKFTGSLQTHS 259
Query: 284 DEP 286
P
Sbjct: 260 HAP 262
>gi|119618834|gb|EAW98428.1| general transcription factor IIH, polypeptide 3, 34kDa, isoform
CRA_c [Homo sapiens]
Length = 169
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 92/138 (66%), Gaps = 1/138 (0%)
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 205
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K
Sbjct: 14 RILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVP 72
Query: 206 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKH 265
Q+ L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C
Sbjct: 73 QMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNF 132
Query: 266 LKKCSTCGSVFGQAQTQS 283
C+TC + + +T+S
Sbjct: 133 SPICTTCDAESQEKETES 150
>gi|428673526|ref|NP_001258797.1| general transcription factor IIH subunit 3 isoform d [Homo sapiens]
Length = 162
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 205
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K
Sbjct: 14 RILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVP 72
Query: 206 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKH 265
Q+ L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C
Sbjct: 73 QMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNF 132
Query: 266 LKKCSTCGSVF 276
C+TC + F
Sbjct: 133 SPICTTCETAF 143
>gi|393217350|gb|EJD02839.1| Tfb4-domain-containing protein [Fomitiporia mediterranea MF3/22]
Length = 432
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 146/317 (46%), Gaps = 61/317 (19%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSL-------SFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
D+ S + ++LD P W SSL SF FL LAFLN LTL N +VV
Sbjct: 29 DNPSHLAIILDLFPTQWHLSSLPKNAYPHSFKSFLAQTLAFLNFHLTLKHENALVVYGAF 88
Query: 64 YNSCDYVYDSSSTGNQ------SVGNGRMP------SLCATLLQNLEEFMNKDEQLGKQE 111
+Y S+ + +V N +P ++ + + L+ + DE+ +Q
Sbjct: 89 PGKSVLLYSSTDHKAEGADDSIAVPNTYLPFKVVDTAVTKRISEELDAMSDFDEEALRQ- 147
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRSG-------------------------------L 140
L G+L+ ALC F +
Sbjct: 148 ---------LVGALTKALCRTGLSFLKPCSNLDLLDERAVIDINWLVNPTATSIDSDVPV 198
Query: 141 LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR-SMVPIDSCYLGAQNSAFLQQASYITGG 199
+ P+PRI+ L SPD Y+ +MN+IFSAQ V ID C + A ++ FLQQA+++TGG
Sbjct: 199 VSPEPRIVILSVSPDLSTSYIPLMNSIFSAQNLCKVAIDVCKIYAPDAVFLQQAAHLTGG 258
Query: 200 VHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCL 259
+ ++ D L Q+LL F R + +P +DFR +CF HK +D+G++CSV L
Sbjct: 259 SYIYLERRDALLQHLLMTFLPTPSIRQPIAVPTQDKIDFRVACFFHKTIVDIGFVCSVRL 318
Query: 260 SIYCKHLKKCSTCGSVF 276
SI C+ + CSTC + F
Sbjct: 319 SILCQLVPVCSTCRTKF 335
>gi|441630273|ref|XP_004089524.1| PREDICTED: general transcription factor IIH subunit 3 isoform 4
[Nomascus leucogenys]
Length = 162
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 88/131 (67%), Gaps = 1/131 (0%)
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 205
RIL ++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K
Sbjct: 14 RILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVP 72
Query: 206 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKH 265
Q+ L QYLL +F D R+ L LP PV VD+RA+CFCH+N I++GY+CSVCLSI+C
Sbjct: 73 QMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNF 132
Query: 266 LKKCSTCGSVF 276
C+TC + F
Sbjct: 133 SPICTTCETAF 143
>gi|389644740|ref|XP_003720002.1| RNA polymerase II transcription factor B subunit 4 [Magnaporthe
oryzae 70-15]
gi|351639771|gb|EHA47635.1| RNA polymerase II transcription factor B subunit 4 [Magnaporthe
oryzae 70-15]
gi|440470636|gb|ELQ39698.1| RNA polymerase II transcription factor B subunit 4 [Magnaporthe
oryzae Y34]
gi|440480828|gb|ELQ61470.1| RNA polymerase II transcription factor B subunit 4 [Magnaporthe
oryzae P131]
Length = 380
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 155/329 (47%), Gaps = 71/329 (21%)
Query: 11 DDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D SL+VV++DTNP W+ L S+ + ++L F+NA L L+ + V VIA +
Sbjct: 17 DTPSLLVVVIDTNPRAWALLRDVLPISKAIANILVFVNAHLALSSSHSVAVIAAHTHRAV 76
Query: 69 YVY------------DSSSTGNQSVGNGRMPS------------LCATLLQNLEEFMNKD 104
++Y D T + + + P+ + +TLL +L + +
Sbjct: 77 WLYPSPPKPPVRDANDVEMTDADAGKDKKQPATSSANKLPQFAHIESTLLSSLHDLI--- 133
Query: 105 EQLGKQEPEGRIACSLLSGSLSMALCYIQR----VFRSGL--LHPQP------------- 145
Q + +L+SG LS+AL +I + +G+ +P
Sbjct: 134 -QSTTKAELASTTTTLISGGLSLALAHINKTKELAMATGIDATKAEPAAPGVSASTAGAG 192
Query: 146 ---------------RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL-GAQNSAF 189
RIL + S +QY+ MNA+F+A + VP+D L GA + F
Sbjct: 193 VNGGGGSAARTVLHSRILTVSVSDSSADQYIPTMNAVFAASSAGVPLDVLALRGA--APF 250
Query: 190 LQQASYITGGVHHKPQQLDGLFQYLLTIFGTD--LHSRNFLQLPKPVGVDFRASCFCHKN 247
LQQ ++ITGG + + G+ YL+T F + + S+ L P VDFRA+CFCH+
Sbjct: 251 LQQGAFITGGTYIAATEPRGILAYLMTGFASTSGVGSQGLLLSPGSESVDFRAACFCHRR 310
Query: 248 TIDMGYICSVCLSIYCK--HLKKCSTCGS 274
+D GY+CSVCLSI+C+ +C TCGS
Sbjct: 311 AVDTGYVCSVCLSIFCEVPSGAECLTCGS 339
>gi|189241296|ref|XP_975136.2| PREDICTED: similar to transcription factor TFIIH-subunit, putative
[Tribolium castaneum]
gi|270013170|gb|EFA09618.1| hypothetical protein TcasGA2_TC011739 [Tribolium castaneum]
Length = 232
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 89/210 (42%), Positives = 123/210 (58%), Gaps = 24/210 (11%)
Query: 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQP------ 145
T+ QNL + + ++ E SLL+G+++MALCYI R+ R+ +P
Sbjct: 37 TIKQNLAKLLATEKSTLVTE-------SLLAGAIAMALCYIARIQRT-----KPPGCVLN 84
Query: 146 -RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKP 204
RIL + GS D QY+ MN F+AQ+ + ID C L Q+ + LQQ ITGG++ K
Sbjct: 85 SRILVVTGSGDSASQYMNYMNVFFTAQKQGIVIDVCALD-QHLSLLQQGCDITGGLYLKV 143
Query: 205 QQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK 264
QL GL QYLL +F + R L LP PV VD+RA+CFCH+ ID+GY+CSVCLSI+CK
Sbjct: 144 PQLQGLLQYLLWVFLPEPPIRQKLVLPPPVKVDYRAACFCHRELIDIGYVCSVCLSIFCK 203
Query: 265 HLKKCSTCGSVFGQAQTQSDEPSATNRKRK 294
C+TC +VF + +P +KRK
Sbjct: 204 FSPICTTCHTVFKIPGPLAVKP----KKRK 229
>gi|146416891|ref|XP_001484415.1| hypothetical protein PGUG_03796 [Meyerozyma guilliermondii ATCC
6260]
Length = 378
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 98/336 (29%), Positives = 155/336 (46%), Gaps = 48/336 (14%)
Query: 7 KLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+ ++DD SL+ V+LD NP W + + + + ++ F+NA L+LN N+V +
Sbjct: 38 ETFTDDPSLLTVILDLNPLGWYNIRNRTTVKEVTKSLIVFMNAHLSLNNSNRVAFLTASP 97
Query: 65 NSCDYVY-----DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
+ ++Y D T N V G L E N+ + + + E S
Sbjct: 98 SGARFLYPNTMSDQKDTANTLVNRGMYRQFRIVDETVLLELNNEFQAVAQSELTDY--KS 155
Query: 120 LLSGSLSMALCYIQRVFR---------------------------------SGLLHPQPR 146
+SG+LS+AL Y R+ S L+ + R
Sbjct: 156 TVSGALSLALTYTHRMLTLDESISTTTASAISTSTNVASNSSAAGAGSTGASNLISMKSR 215
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQ 206
IL + + +Y+ IMN+IF+AQ+ V ID LG+++ ++LQQA+ T GV+ Q
Sbjct: 216 ILVVSPDDNDDIRYIPIMNSIFAAQKMKVSIDVVKLGSKDVSYLQQAADATNGVYLHVQN 275
Query: 207 LDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIY--CK 264
+GL Q L T + + R + LP V++RASCF +ID+G++CSVCL I
Sbjct: 276 PEGLIQVLSTAYFIEPSLRPLVVLPTNSNVNYRASCFVTGKSIDLGFVCSVCLCIMSIIP 335
Query: 265 HLKKCSTCGSVFGQ---AQTQSDEPSATNRKRKTTD 297
L KC TC S F +Q + P+ RK++ D
Sbjct: 336 DLGKCPTCQSEFDPNILSQLRR-SPAVLPRKKRKVD 370
>gi|367012173|ref|XP_003680587.1| hypothetical protein TDEL_0C04870 [Torulaspora delbrueckii]
gi|359748246|emb|CCE91376.1| hypothetical protein TDEL_0C04870 [Torulaspora delbrueckii]
Length = 325
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 140/303 (46%), Gaps = 27/303 (8%)
Query: 3 SAPSKLYSDDV-SLVVVLLDTNPFFWS------SSSLSFSQFLTHVLAFLNAILTLNQLN 55
+ P Y+++ SL+ +++DT P W+ S + + ++ FLNA L N N
Sbjct: 12 TKPKSQYAEETPSLLTLVIDTAPKLWAELDDEKSQNANIISVFESIIVFLNAHLAFNSSN 71
Query: 56 QVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQN--LEEFMNKDEQLGK---- 109
QV VIA Y+Y S+ GN + +++ N +F N DE L +
Sbjct: 72 QVAVIAAHSQGIKYLYPKSNVGNNKATSSSTSGKDLSIINNDMYRQFRNVDETLVEELYK 131
Query: 110 --QEPEGRI----ACSLLSGSLSMALCYIQRVFRS-GLLHPQPRILCLQ----GSPDGPE 158
QE + +I S L+G +S L YI R+ R + + R+L + G D
Sbjct: 132 LFQEEKNQIDKVTQKSTLAGGISAGLTYINRISRELATIALKSRLLVITCGSGGGRDEIF 191
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 217
QY+ IMN IFSA + PID +G + S FLQQ + T GV+ + GL QYL T
Sbjct: 192 QYIPIMNCIFSATKLKCPIDVVKIGGHRESTFLQQTTDATNGVYLHLESTQGLIQYLSTA 251
Query: 218 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--KHLKKCSTCGSV 275
D R + P VDFR SC+ + +GYICSVCL + KC C S
Sbjct: 252 MFIDPSLRPIIVKPNQGSVDFRTSCYLTGKVVAIGYICSVCLCVLSILPPGNKCPACDSE 311
Query: 276 FGQ 278
F +
Sbjct: 312 FDE 314
>gi|448098480|ref|XP_004198937.1| Piso0_002332 [Millerozyma farinosa CBS 7064]
gi|359380359|emb|CCE82600.1| Piso0_002332 [Millerozyma farinosa CBS 7064]
Length = 376
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 159/353 (45%), Gaps = 65/353 (18%)
Query: 5 PSKLYSDDVSLVVVLLDTNPFFW--SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
P++ DD SL+ V+LD P W ++ + +L FLNA L+LN NQV I
Sbjct: 14 PTQPTVDDPSLLTVILDLTPHGWFKIKHHITVQEVTKALLVFLNAHLSLNNSNQVAFIVC 73
Query: 63 GYNSCDYVY-----------DSSSTGNQSVGNGRMPSLCATLLQN---------LEEFMN 102
+ ++Y D+ S+ ++ P+L T + LEE
Sbjct: 74 SPDGAKFLYPNPGKNFDGIQDNGSSKGETGNKSSNPNLVNTEMYRQFRIVDEAVLEELNE 133
Query: 103 KDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR--------------------SGLLH 142
+ L K + S LSG+LS+AL Y R+ SG +
Sbjct: 134 VLKSLSKSNSVNKTR-STLSGALSLALTYTNRMLNLDQSISTTTASAFNATTKSTSGTSN 192
Query: 143 PQ-----------------PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ 185
RIL + + D +Y+ IMN++F+AQ+ +PID LG+
Sbjct: 193 VTSSGSSASAVSTNYTSMLSRILVISANDDDDVKYIPIMNSMFAAQKMRLPIDVAKLGSI 252
Query: 186 NSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCH 245
+S++LQQAS T G++ + ++ +GL Q L T F + R + LP V +RASCF
Sbjct: 253 SSSYLQQASDATNGIYLQVEKPEGLIQTLCTAFFIESSIRPLIILPSNSNVSYRASCFIT 312
Query: 246 KNTIDMGYICSVCLSIY--CKHLKKCSTCGSVFGQA---QTQSDEPSATNRKR 293
++D+GY+CSVCL I KC TC S F ++ Q Q+ +T R++
Sbjct: 313 GKSVDLGYVCSVCLCIMSIIPTDAKCPTCNSHFDKSILNQLQNSVVLSTKRRK 365
>gi|254580699|ref|XP_002496335.1| ZYRO0C16016p [Zygosaccharomyces rouxii]
gi|238939226|emb|CAR27402.1| ZYRO0C16016p [Zygosaccharomyces rouxii]
Length = 342
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/297 (32%), Positives = 138/297 (46%), Gaps = 26/297 (8%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQ------FLTHVLAFLNAILTLNQLNQVVV 59
S L + SL+ V++DT P W+ +Q L +L FLNA L N NQV V
Sbjct: 37 SHLAEETPSLLTVIVDTAPRLWAELDNERNQTGKIIDMLKSLLVFLNAHLAFNSSNQVAV 96
Query: 60 IATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL----------GK 109
IA Y+Y SS+ + G+ S+ + +F N DE L K
Sbjct: 97 IAAHSQGIKYLYPKSSSNQSNSLKGKDLSIINNDM--YRQFRNVDETLVEELYGLFQQEK 154
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVFRS-GLLHPQPRILCLQ----GSPDGPEQYVAIM 164
++ + S L+G++S L Y+ RV + + + R+L + G D QY+ IM
Sbjct: 155 EQADEVTQKSTLAGAMSAGLTYVNRVSKELETISFKSRLLVVTCGSGGGRDEIFQYIPIM 214
Query: 165 NAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
N IFSA + PID +G ++ S FLQQ + T GV+ + +GL QYL T D
Sbjct: 215 NCIFSATKLKCPIDVVKIGGSKESTFLQQTTDATQGVYLHAESTEGLIQYLATAMFIDPS 274
Query: 224 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL--KKCSTCGSVFGQ 278
R + P VDFR SC+ + +GYICSVCL + +C C S F +
Sbjct: 275 LRQIIVKPNQGSVDFRTSCYLTGKVVAIGYICSVCLCVLSVSPPGNRCPACDSEFDE 331
>gi|190347434|gb|EDK39698.2| hypothetical protein PGUG_03796 [Meyerozyma guilliermondii ATCC
6260]
Length = 378
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/336 (28%), Positives = 154/336 (45%), Gaps = 48/336 (14%)
Query: 7 KLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+ ++DD SL+ V+LD NP W + + + + ++ F+NA L+LN N+V +
Sbjct: 38 ETFTDDPSLLTVILDLNPLGWYNIRNRTTVKEVTKSLIVFMNAHLSLNNSNRVAFLTASP 97
Query: 65 NSCDYVY-----DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
+ ++Y D T N V G L E N+ + + + E S
Sbjct: 98 SGARFLYPNTMSDQKDTANTLVNRGMYRQFRIVDETVLSELNNEFQAVAQSELTDY--KS 155
Query: 120 LLSGSLSMALCYIQRVFR---------------------------------SGLLHPQPR 146
+SG+LS+AL Y R+ S L+ + R
Sbjct: 156 TVSGALSLALTYTHRMLTLDESISTTTASAISTSTNVASNSSAAGAGSTGASNLISMKSR 215
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQ 206
IL + + +Y+ IMN+IF+AQ+ V ID LG+++ ++LQQA+ T GV+ Q
Sbjct: 216 ILVVSPDDNDDIRYIPIMNSIFAAQKMKVSIDVVKLGSKDVSYLQQAADATNGVYLHVQN 275
Query: 207 LDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIY--CK 264
+GL Q L T + + R + LP V++RASCF +ID+G++CSVCL I
Sbjct: 276 PEGLIQVLSTAYFIEPSLRPLVVLPTNSNVNYRASCFVTGKSIDLGFVCSVCLCIMSIIP 335
Query: 265 HLKKCSTCGSVFGQ---AQTQSDEPSATNRKRKTTD 297
KC TC S F +Q + P+ RK++ D
Sbjct: 336 DSGKCPTCQSEFDPNILSQLRR-SPAVLPRKKRKVD 370
>gi|50286117|ref|XP_445487.1| hypothetical protein [Candida glabrata CBS 138]
gi|62901307|sp|Q6FWA7.1|TFB4_CANGA RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|49524792|emb|CAG58398.1| unnamed protein product [Candida glabrata]
Length = 335
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 141/295 (47%), Gaps = 28/295 (9%)
Query: 10 SDDV-SLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
++D+ SL+ V+LD +P W S S + L ++ FLN+ L N NQV VIA
Sbjct: 19 TEDIPSLLTVVLDISPRLWAEFDHRSGEKQSVTTVLKSLIVFLNSHLAFNSANQVAVIAA 78
Query: 63 GYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGK------QEPEGR 115
Y+Y SS T Q+ GN + S+ ++ + F N DE L + Q E
Sbjct: 79 FSQGIQYLYPRSSDTSEQNAGNSKDLSIISSHM--YRRFRNVDETLIEEFYKLYQREESL 136
Query: 116 I----ACSLLSGSLSMALCYIQRV---FRSGLLHPQPRILCLQGSPDGPE--QYVAIMNA 166
I S LSG+++ AL Y R+ F S L + ++ S + E QY+ IMN
Sbjct: 137 IDKPVQKSTLSGAMAAALTYTNRLTKEFESISLRSRLLVITCGSSREKDEIFQYIPIMNC 196
Query: 167 IFSAQRSMVPIDSCYLGA-QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSR 225
IFSA + PID +G + S FLQQ + T GV+ + +G+ QYL T D R
Sbjct: 197 IFSATKLKCPIDVIKIGGNKQSTFLQQTTDATNGVYIHLESTNGIIQYLSTAMSIDPSLR 256
Query: 226 NFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 278
+ P VDFR SC+ + +GYICSVCL + KC C S F +
Sbjct: 257 QIIVRPTQGSVDFRTSCYLTGKVVAIGYICSVCLCVLSIIPPGNKCPACDSQFDE 311
>gi|448102380|ref|XP_004199788.1| Piso0_002332 [Millerozyma farinosa CBS 7064]
gi|359381210|emb|CCE81669.1| Piso0_002332 [Millerozyma farinosa CBS 7064]
Length = 376
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/358 (29%), Positives = 159/358 (44%), Gaps = 65/358 (18%)
Query: 5 PSKLYSDDVSLVVVLLDTNPFFW--SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIAT 62
P++ DD SL+ V+LD P W ++ + +L FLNA L+LN NQV I
Sbjct: 14 PAQPTVDDPSLLTVILDLTPHGWFKIKDHITVQEVTKALLVFLNAHLSLNNTNQVAFIVC 73
Query: 63 GYNSCDYVYDSSST---GNQSVGNGR--------MPSLCATLLQN---------LEEFMN 102
+ ++Y + G Q GN + P+L T + LEE
Sbjct: 74 SPDGAKFLYPNPGKNFDGIQDNGNSKGEAGTKTPSPNLVNTEMYRQFRIVDEAVLEELNE 133
Query: 103 KDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR--------------------SGLLH 142
+ L + S LSG+LS+AL Y R+ SG +
Sbjct: 134 VIKSLSNSNSVNKTR-STLSGALSLALTYTNRMLNLDQSISTTTASAFNATTKSTSGTTN 192
Query: 143 PQ-----------------PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ 185
RIL + + D +Y+ IMN++F+AQ+ +PID LG+
Sbjct: 193 ATGSGSSASAVSTNYTSMLSRILVISANDDDDVKYIPIMNSMFAAQKMRLPIDVAKLGSV 252
Query: 186 NSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCH 245
+S++LQQAS T G++ + + +GL Q L T F + R + LP V +RASCF
Sbjct: 253 SSSYLQQASDATNGIYLQVENPEGLIQTLCTAFFIESSIRPLIILPSNSNVSYRASCFIT 312
Query: 246 KNTIDMGYICSVCLSIY--CKHLKKCSTCGSVFGQA---QTQSDEPSATNRKRKTTDA 298
++D+GY+CSVCL I KC TC S F ++ Q Q+ +T R++ T+
Sbjct: 313 GKSVDLGYVCSVCLCIMSIIPTDAKCPTCNSHFDKSILNQLQNSVVLSTKRRKIDTNG 370
>gi|405968700|gb|EKC33746.1| Poly [ADP-ribose] polymerase 4 [Crassostrea gigas]
Length = 3371
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 141/283 (49%), Gaps = 55/283 (19%)
Query: 14 SLVVVLLDTNPFFW---------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
S ++++LDTNP +W + ++ ++ L V+ F ++ L +N N++ +IA
Sbjct: 2844 SQLIIILDTNPVWWGHKPSSHTKAQQKMTLTECLNSVMVFAHSHLMMNHSNKLAIIAAHS 2903
Query: 65 NSCDYVYDS--------SSTGNQSVGNGRMPSLCATLLQNLEEFMNK--DEQL-GKQEPE 113
+ ++Y S + GN L + + ++E + D + G+ P+
Sbjct: 2904 DQSVFLYPKNDPTVHVISEADEVTEGNDGKYELFNQVDKQIKEGIKNLIDNCMNGQLYPD 2963
Query: 114 GRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRS 173
SL++G+L+MALC QR H + IL + R
Sbjct: 2964 -----SLVAGALAMALC--QRS------HEEAGIL---------------------SSRI 2989
Query: 174 MVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKP 233
+V ID+C L + S LQQA ITGG++ K Q+ GL QYL+ +F D R L LP
Sbjct: 2990 LVVIDACVLDNE-SGLLQQACDITGGIYLKIPQMKGLLQYLMWVFLPDPLERPKLTLPPK 3048
Query: 234 VGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
V VD+RA+CFCH+N ID+GY+CSVCLSI+C C TC + F
Sbjct: 3049 VQVDYRAACFCHRNLIDIGYVCSVCLSIFCAFSPICGTCQTTF 3091
>gi|281211236|gb|EFA85402.1| general transcription factor IIH [Polysphondylium pallidum PN500]
Length = 276
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 128/241 (53%), Gaps = 37/241 (15%)
Query: 11 DDVSLVVVLLDTNPFFWSSSS---------------LSFSQFLTHVLAFLNAILTLNQLN 55
DD SL+V++ D N + W + ++ F+ ++L F+NA L LNQ N
Sbjct: 12 DDNSLLVIVADFNIYSWGQRAQTVQSEGRDGRRFPLITLPTFIENLLVFINAYLMLNQEN 71
Query: 56 QVVVIATGYNSCDYVY----DSSSTGNQSVGN------GRMPSLCATLLQNLEEFMNKDE 105
Q+ +I++ +VY + T ++ + R+ ++C L+NL++
Sbjct: 72 QIALISSVIGESYFVYPPQPQQALTDHRCISEQIQSSLERINTIC---LENLDK------ 122
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMN 165
+E + + S S ++S+ALCYI R+ + + RIL SPD QY+ +MN
Sbjct: 123 --RSEEQQQQDCTSSFSAAMSLALCYINRI-KKEFPSLRARILVFNLSPDVSTQYIPVMN 179
Query: 166 AIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSR 225
IFSAQ+ +P+DSC L +S FLQQAS++T G++ KPQ+ + L QYLL+ F D SR
Sbjct: 180 CIFSAQKQSIPVDSCVLSTTDSTFLQQASHLTNGIYLKPQRQENLSQYLLSTFLVDSFSR 239
Query: 226 N 226
N
Sbjct: 240 N 240
>gi|448533948|ref|XP_003870733.1| TFIIH complex subunit [Candida orthopsilosis Co 90-125]
gi|380355088|emb|CCG24605.1| TFIIH complex subunit [Candida orthopsilosis]
Length = 408
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 158/342 (46%), Gaps = 56/342 (16%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+D+ SL+ ++LD +P W S S S +L FLN L++N NQV I + +
Sbjct: 64 NDEPSLLTIILDISPRGWYSIKDSTSLQDVAKSLLVFLNGHLSINNSNQVSFIVSSPQTS 123
Query: 68 DYVY-----DSSSTGNQSVGNG---RMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
++Y +ST + + G + ++ +L+ L F+ + ++ R S
Sbjct: 124 KFLYPHPSNQKTSTTDSKISPGMYRQFKNVNEVVLEELNRFIKETSEISVVSTARR--NS 181
Query: 120 LLSGSLSMALCYIQR------------------------------------VFRSGLLHP 143
++G++SMAL Y R + S
Sbjct: 182 SITGAISMALTYTYRMSILDQSIQTTTASAINTSSINAKQSDASSSSTTAGIVPSTSTSI 241
Query: 144 QPRILCLQGSPDGPE--QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVH 201
+ RIL + + DG + Y+ +MN IF+AQ+ V ID LG +NS++LQQAS T GV+
Sbjct: 242 KSRILIVSAN-DGDDSINYIPLMNCIFTAQKLKVSIDVAKLGFKNSSYLQQASDATNGVY 300
Query: 202 HKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI 261
+ G+ Q L T F + + R ++ LP V+++ASCF K +D+G++CSVCL I
Sbjct: 301 LHIEDPQGIIQVLTTAFFIEPNLRPYVILPTNTQVNYKASCFITKRPVDVGFVCSVCLCI 360
Query: 262 YCK--HLKKCSTCGSVFGQA---QTQSDEPSATNRKRKTTDA 298
K +KC C S F + + D T +KRK D+
Sbjct: 361 MSKIPEDEKCPACSSEFDKRSIYELTKDPQVVTRKKRKLDDS 402
>gi|402084346|gb|EJT79364.1| RNA polymerase II transcription factor B subunit 4 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 382
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 155/325 (47%), Gaps = 58/325 (17%)
Query: 9 YSDDV-SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+ D++ SL+ V++DTNP W+ L S+ + ++L ++NA L L+ LNQV +IA +
Sbjct: 17 HVDEIPSLLAVVVDTNPSAWALLRDVLPISKAIANILIYVNAHLALSNLNQVAIIAAHAH 76
Query: 66 SCDYVYDSSSTG---NQSVGNGRMPSLCAT---------LLQNLEEFMNKD-------EQ 106
++Y S + G+ M AT + L +F + + +
Sbjct: 77 RARWLYPSPPNPRPRKDAAGDVEMADAAATSQNSRTRAAAAKKLPQFAHIESAVLDSLQA 136
Query: 107 LGKQEPEGRIA---CSLLSGSLSMALCYIQRVFRSGL---LHPQPRILCLQGSPDGPE-- 158
L ++ +A +L+SG+L++AL +I +V + L + GS P
Sbjct: 137 LIRETSPAEVASTTTTLVSGALTLALAHINKVREAALGAGFAERSAAAASPGSTAIPAGA 196
Query: 159 ------------------------QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQAS 194
QY+ MNA+F+A + VP+D L N++FLQQ S
Sbjct: 197 GNVGAAAAVRARILVVSVSDSSASQYIPTMNAVFAASHASVPVDVVALRG-NASFLQQGS 255
Query: 195 YITGGVHHKPQQLDGLFQYLLTIFGTDLHS-RNFLQLPKPVGVDFRASCFCHKNTIDMGY 253
YITGG ++ GL YL+T F + + L P VDFRA+CFCH+ +D G+
Sbjct: 256 YITGGNFIHAKEPRGLLTYLMTGFPVGGGAVSDMLIGPGTESVDFRAACFCHRKALDTGF 315
Query: 254 ICSVCLSIYCKHL--KKCSTCGSVF 276
+CSVCLSI+C+ +C TCGS
Sbjct: 316 VCSVCLSIFCEAPPENECLTCGSAL 340
>gi|255715715|ref|XP_002554139.1| KLTH0E15180p [Lachancea thermotolerans]
gi|238935521|emb|CAR23702.1| KLTH0E15180p [Lachancea thermotolerans CBS 6340]
Length = 337
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 139/311 (44%), Gaps = 31/311 (9%)
Query: 14 SLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
SL+ V++DT P W S + L ++ FLN+ LT N NQV VIA +
Sbjct: 24 SLLTVVVDTTPKAWAELDRESEHEGNLISALQSLIVFLNSHLTFNSANQVAVIAAHSSGI 83
Query: 68 DYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQL-----------GKQEPEGRI 116
Y+Y +ST +Q R L +F N DE + GK+E
Sbjct: 84 KYLYPVTST-SQDETAARSADLSIINSDMYRQFRNVDETVLEELYKLLQEEGKREQPSGF 142
Query: 117 ACSLLSGSLSMALCYIQRVFRS-GLLHPQPRILCL----QGSPDGPEQYVAIMNAIFSAQ 171
S LSG++S YI R+ + + R++ + G D QY+ IMN IFSA
Sbjct: 143 QKSTLSGAMSAGFTYINRIIKEQSSASLKARLMVVTCGSSGGKDEVFQYIPIMNCIFSAT 202
Query: 172 RSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQL 230
+ P+D +G +Q S FLQQA+ T GV+ +GL QYL T D R +
Sbjct: 203 KLKCPVDVVKIGGSQESTFLQQATDATNGVYLHVPSTEGLIQYLTTAMFIDPSLRPIIVK 262
Query: 231 PKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQAQTQSDE--- 285
P VDFR SC+ + +G++CSVCL + +C C S F + T +
Sbjct: 263 PNQGSVDFRTSCYLTGKVVAVGFVCSVCLCVLSVIPPGNRCPACDSEFDEHVTTKLKKKP 322
Query: 286 --PSATNRKRK 294
P +KRK
Sbjct: 323 VVPGMIQKKRK 333
>gi|302830812|ref|XP_002946972.1| hypothetical protein VOLCADRAFT_79384 [Volvox carteri f.
nagariensis]
gi|300268016|gb|EFJ52198.1| hypothetical protein VOLCADRAFT_79384 [Volvox carteri f.
nagariensis]
Length = 141
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 84/118 (71%)
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIF 218
QY+ +MNAIFSAQR+ V +D+ L ++S+FLQQA+++TGG++ KP L LL F
Sbjct: 2 QYIPVMNAIFSAQRAEVLLDAVVLATEDSSFLQQAAHLTGGLYFKPAGAGALLGLLLNYF 61
Query: 219 GTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
D +R L + + +GVDFRASCFCHK I+ GY+CSVCLSI+C+ + CSTCG+ F
Sbjct: 62 VCDTSTRKQLDVAQELGVDFRASCFCHKYVIETGYVCSVCLSIFCQPSRACSTCGTAF 119
>gi|365982181|ref|XP_003667924.1| hypothetical protein NDAI_0A05260 [Naumovozyma dairenensis CBS 421]
gi|343766690|emb|CCD22681.1| hypothetical protein NDAI_0A05260 [Naumovozyma dairenensis CBS 421]
Length = 339
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 95/298 (31%), Positives = 135/298 (45%), Gaps = 25/298 (8%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVV 59
S L + SL+ V++D P W+ + S L ++ FLNA L N NQV V
Sbjct: 16 SSLSEETPSLLTVIIDITPKLWTELDQETEENGSLISVLKSLIVFLNAHLAFNSSNQVAV 75
Query: 60 IATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ------EPE 113
IA+ Y+Y ++ G+ + + L F N DE L ++ +
Sbjct: 76 IASHSQGIKYLYPQNTKGSDEESSSKTKDLSIINKDMYRRFRNVDETLVEELYTLFEKER 135
Query: 114 GRI----ACSLLSGSLSMALCYIQRVFRS-GLLHPQPRILCLQ-----GSPDGPEQYVAI 163
+I S LSG++S L YI R+ R + + R++ L S D QY+ I
Sbjct: 136 DQIDKFKQKSTLSGAMSAGLTYINRLSRELEAISLKSRLMVLTCGGKGESKDEIFQYIPI 195
Query: 164 MNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDL 222
MN IFSA + PID +G ++ S FLQQ + T GV+ + GL QYL T D
Sbjct: 196 MNCIFSANKIKCPIDVVKIGGSERSTFLQQTTDATNGVYLHVESSKGLIQYLSTAMFIDP 255
Query: 223 HSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 278
R + P VDFR SC+ + +GYICSVCL + KC C S F +
Sbjct: 256 SLRQIIVKPNHGSVDFRTSCYLTGKVVAIGYICSVCLCVLSIIPPGNKCPACDSEFDE 313
>gi|428673522|ref|NP_001258795.1| general transcription factor IIH subunit 3 isoform b [Homo sapiens]
Length = 265
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 137/284 (48%), Gaps = 59/284 (20%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G P + LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
+G+ +LL+GSL+ ALCYI R MN +
Sbjct: 125 KGQHTETLLAGSLAKALCYIHR-----------------------------MNKEVKDNQ 155
Query: 173 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 232
M S L A ITGG++ K Q+ L QYLL +F D R+ L LP
Sbjct: 156 EM-----------KSRIL--ACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPP 202
Query: 233 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 203 PVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 246
>gi|441630267|ref|XP_004089522.1| PREDICTED: general transcription factor IIH subunit 3 isoform 2
[Nomascus leucogenys]
Length = 265
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 137/284 (48%), Gaps = 59/284 (20%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVY--DSSSTGNQSVGNGRMPSLCAT--------LLQNLEEFMNKD--EQLGKQEP 112
++Y + G+ G P + LL + E + ++ + + K +
Sbjct: 65 QESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKGDI 124
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
+G+ +LL+GSL+ ALCYI R MN +
Sbjct: 125 KGQHTETLLAGSLAKALCYIHR-----------------------------MNKEIKDNQ 155
Query: 173 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 232
M S L A ITGG++ K Q+ L QYLL +F D R+ L LP
Sbjct: 156 EM-----------KSRIL--ACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPP 202
Query: 233 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
PV VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 203 PVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 246
>gi|171689210|ref|XP_001909545.1| hypothetical protein [Podospora anserina S mat+]
gi|170944567|emb|CAP70678.1| unnamed protein product [Podospora anserina S mat+]
Length = 396
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 151/341 (44%), Gaps = 74/341 (21%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
SKL D SL +++DTNP W++ L S+ + ++ F+NA L L+ NQ+ ++A
Sbjct: 16 SKL-EDVPSLTTIIIDTNPRAWAALGDVLPLSKAIANIQIFINAHLALSNTNQIAILAAH 74
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEF-----------MNKDEQLGKQ-E 111
N ++Y + R T L +F + E +G
Sbjct: 75 TNRAVWLYPTPPKPPSEDVEMRDAGKTDTFLNTANKFPQYAQIEHALVTSLRELIGSTIP 134
Query: 112 PEGRIACSLLSGSLSMALCYIQRV-----------------------FRSGLLHPQPRIL 148
P+ + +SG+L++AL ++ + +GL+ RIL
Sbjct: 135 PDLNETTTQMSGALTLALAHMNKTALAYSASQALSNSTAGTTAPGTTASTGLVGFHGRIL 194
Query: 149 CLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLD 208
+ S QY+ MNA+F+A S + ID+ L ++ FL+QAS+IT G +
Sbjct: 195 VISVSDSAASQYIPTMNAVFAASMSRIAIDTLALRG-SATFLEQASFITQGTFIQAADPQ 253
Query: 209 GLFQYLLTIFGTDLHS-----------------------RNFLQLPKPVG---------- 235
G+ QYL+ FG S R +L KPVG
Sbjct: 254 GILQYLMFGFGVGSASSGLSAAQNDGSGPLMGKSKTGKQREGDELRKPVGECLFTPAADS 313
Query: 236 VDFRASCFCHKNTIDMGYICSVCLSIYCKHL--KKCSTCGS 274
VDFRA+CFCH+N +D G++CS+CLSI+C+ +C TCG+
Sbjct: 314 VDFRAACFCHRNVVDTGFVCSICLSIFCEPPPGDECLTCGN 354
>gi|444315902|ref|XP_004178608.1| hypothetical protein TBLA_0B02470 [Tetrapisispora blattae CBS 6284]
gi|387511648|emb|CCH59089.1| hypothetical protein TBLA_0B02470 [Tetrapisispora blattae CBS 6284]
Length = 340
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 100/311 (32%), Positives = 139/311 (44%), Gaps = 40/311 (12%)
Query: 3 SAPSKLYSDDVSLVVVLLDTNPFFWS-----------SSSLSFSQFLTHVLAFLNAILTL 51
+A ++ + SL+ V++DT P W+ + + + ++ FLN+ L
Sbjct: 12 TARPQVVEETPSLLTVVIDTAPKLWTQFDKEDPDDNTNKEPQLLRVIRAIVVFLNSHLAF 71
Query: 52 NQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ- 110
N NQV VIA Y+Y N S +L +F N DE L +
Sbjct: 72 NTNNQVAVIAAHSQGIKYLYPKEDNNNVSESTKEKSNLSIINKDMYRQFRNVDESLVDEL 131
Query: 111 ----EPEGRIA-----CSLLSGSLSMALCYIQRV---------FRSGLLHPQPRILCLQG 152
+ E + S +SG++S AL Y+ R+ F+S LL I C G
Sbjct: 132 FSLFQEESKFIDKKSQKSTISGAMSCALTYVNRITKQFNDASIFKSRLL----VITCGSG 187
Query: 153 -SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQASYITGGVHHKPQQLDGL 210
S D QY+ IMN IFSA + PID +G + S FLQQ + T GV+ + GL
Sbjct: 188 RSKDEVFQYIPIMNCIFSATKMKCPIDVVKIGGHEKSTFLQQTTDATNGVYLYVENTKGL 247
Query: 211 FQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVC---LSIYCKHLK 267
QYL T D R+ + P VDFR SCF + +GYICSVC LSI K+
Sbjct: 248 IQYLSTAMFIDSSLRSIIVKPNHGVVDFRTSCFLTGRVVAVGYICSVCLCVLSIVPKN-N 306
Query: 268 KCSTCGSVFGQ 278
KC C S F +
Sbjct: 307 KCPACDSKFDE 317
>gi|68489766|ref|XP_711270.1| hypothetical protein CaO19.11671 [Candida albicans SC5314]
gi|68489813|ref|XP_711246.1| hypothetical protein CaO19.4194 [Candida albicans SC5314]
gi|46432534|gb|EAK92011.1| hypothetical protein CaO19.4194 [Candida albicans SC5314]
gi|46432559|gb|EAK92035.1| hypothetical protein CaO19.11671 [Candida albicans SC5314]
Length = 363
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 155/337 (45%), Gaps = 54/337 (16%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+DD SL+ ++LD + W + +S +L FLN L+LN NQV + +
Sbjct: 20 NDDPSLLTIILDLSMKGWYNIKEMISIQDITKSLLVFLNGHLSLNNSNQVAFLVSSTMGS 79
Query: 68 DYVY-DSSSTGNQSVG--NGRMPSLCAT-------LLQNLEEFMNKDEQLGKQEPEGRIA 117
++Y D + GN +V + P + + +LQ L E++ + + + +
Sbjct: 80 KFLYPDLTMVGNPNVSEHSEHFPDMYRSFKMVDQSVLQQLNEYIEEIIKFETRNEKKGFN 139
Query: 118 CSLLSGSLSMALCYIQRVF------------------------------------RSGLL 141
C L+G++SMAL Y R+ S
Sbjct: 140 C--LTGAISMALTYTNRMLTLDQSITTTTAAAMTASTLESTSNNNNTSGTSGSSSTSSST 197
Query: 142 HPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVH 201
+ R+L + + D +Y+ +MN IF+AQ+ V ID LG NS++LQQAS T GV+
Sbjct: 198 SMKSRVLIVSANDDDDLRYIPLMNCIFAAQKMKVSIDVAKLGHNNSSYLQQASDATKGVY 257
Query: 202 HKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI 261
+ G+ Q L T F + + R ++ LP V++RASCF ++D+GY+CSVCL I
Sbjct: 258 LHIEDPKGIIQVLSTAFFIEPNLRPYIILPTNSNVNYRASCFITGKSVDLGYVCSVCLCI 317
Query: 262 YCK--HLKKCSTCGSVFGQA--QTQSDEPSATNRKRK 294
+ KC C S F + Q + EP ++K++
Sbjct: 318 MSQLPQSGKCPACDSEFDKKIIQDLNREPQVISKKKR 354
>gi|241956274|ref|XP_002420857.1| RNA polymerase II transcription factor B subunit 4, putative; TFIIH
subunit TFB4, putative [Candida dubliniensis CD36]
gi|223644200|emb|CAX41010.1| RNA polymerase II transcription factor B subunit 4, putative
[Candida dubliniensis CD36]
Length = 363
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 95/339 (28%), Positives = 156/339 (46%), Gaps = 54/339 (15%)
Query: 11 DDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
DD SL+ ++LD + W + +S +L FLN L+LN NQV + +
Sbjct: 21 DDPSLLTIILDLSMKGWYNIKEMISIQDITKSLLVFLNGHLSLNNSNQVAFLVSSSMGSK 80
Query: 69 YVY-DSSSTGNQSVG--NGRMPSLCAT-------LLQNLEEFMNKDEQLGKQEPEGRIAC 118
++Y D ++ GN +V + P + + +L+ L E++ + + + + C
Sbjct: 81 FLYPDLTTIGNPNVNEHSEHFPGMYRSFKMADQSVLRQLNEYIKEIVKFETRNEKRGFNC 140
Query: 119 SLLSGSLSMALCYIQRVF------------------------------------RSGLLH 142
L+G++SMAL Y R+ S
Sbjct: 141 --LTGAISMALTYTNRMLTLDQSITTTTAAAMTTSTLESTSNNNSTSGTGGSSGTSSSTS 198
Query: 143 PQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHH 202
+ RIL + + D +Y+ +MN IF+AQ+ V ID LG NS++LQQAS T GV+
Sbjct: 199 MKSRILIVSANDDDDLRYIPLMNCIFAAQKMKVSIDVAKLGHNNSSYLQQASDATKGVYL 258
Query: 203 KPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIY 262
+ G+ Q L T F + + R ++ LP V++RASCF ++D+GY+CSVCL I
Sbjct: 259 HIEDPKGIIQVLSTAFFIEPNLRPYIILPTNSNVNYRASCFITGKSVDLGYVCSVCLCIM 318
Query: 263 CK--HLKKCSTCGSVFGQA--QTQSDEPSATNRKRKTTD 297
+ KC C S F + Q + EP ++K++ +
Sbjct: 319 SQLPQSGKCPACDSEFDKKIIQELNREPQVISKKKRKLE 357
>gi|302680643|ref|XP_003030003.1| hypothetical protein SCHCODRAFT_30664 [Schizophyllum commune H4-8]
gi|300103694|gb|EFI95100.1| hypothetical protein SCHCODRAFT_30664 [Schizophyllum commune H4-8]
Length = 257
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 128/264 (48%), Gaps = 34/264 (12%)
Query: 18 VLLDTNPFFW---SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS-CDYVYDS 73
V+LD N W S+ LS + L +L FL+A + N + V G + +DS
Sbjct: 3 VILDLNAHQWTQLSTEELSLANALPQLLVFLHAHIAAAAENTLAVYTAGSEGPTELAFDS 62
Query: 74 SST---------GNQSVGNGRMP-SLCATLLQNLEEFMNKDEQLGK-----QEPEGRIAC 118
S GN+ R+ SL + ++ + DE + + +P
Sbjct: 63 LSNDVELPGALDGNKYPPFRRLDVSLTDAIQAAMDRLADADEDMKRTVGTSSDPHA---- 118
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
+ + +L+ +LCYI R L P RIL L SPD + YV MNAIFSAQ+ VPID
Sbjct: 119 TSFTSALTRSLCYINR-----LQSPSSRILLLSVSPDRAQDYVPFMNAIFSAQKLKVPID 173
Query: 179 SCYLGAQNSAFLQQASYITGGVHHK------PQQLDGLFQYLLTIFGTDLHSRNFLQLPK 232
+ L A +S FLQQA+Y+TGG + + + GL QYL+ F R + +P
Sbjct: 174 TLQLAAHDSVFLQQATYLTGGAYVRLGDESGEGKRGGLLQYLMMCFLPPPALRQVMAVPT 233
Query: 233 PVGVDFRASCFCHKNTIDMGYICS 256
V+ RA+CFCHK ++G++CS
Sbjct: 234 MDQVNLRAACFCHKRMTEIGFVCS 257
>gi|294658697|ref|XP_461035.2| DEHA2F15510p [Debaryomyces hansenii CBS767]
gi|218511849|sp|Q6BL86.2|TFB4_DEBHA RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|202953319|emb|CAG89405.2| DEHA2F15510p [Debaryomyces hansenii CBS767]
Length = 387
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 103/353 (29%), Positives = 154/353 (43%), Gaps = 78/353 (22%)
Query: 15 LVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY- 71
L+ V+LD P W + ++ + +L FLNA L+LN NQV IA+ ++Y
Sbjct: 24 LLTVVLDVTPQSWYKIRNQITIQEVAKSLLVFLNAHLSLNNSNQVAFIASTPQGSKFLYP 83
Query: 72 ---------DSSSTGNQS-----------VGNG---RMPSLCATLLQNLEE-FMNKDEQL 107
S G S VG+G + + +L+ L E F + + +
Sbjct: 84 NPEKNYDEVSSKKNGEGSNLNKADSTSSLVGDGMYRQFRIVDEAVLEKLNEIFADISQNV 143
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFR------------------------------ 137
K + S LSG+LS+AL Y R+
Sbjct: 144 DKSR-----SNSTLSGALSLALTYTNRMLNLDSSISTTTASAINTTTNANSNKTSSSGTT 198
Query: 138 -----------SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQN 186
+ L + RIL + + D +Y+ IMN F+AQ+ VPID LG ++
Sbjct: 199 SNSMSTGGTNTTSLTSMRSRILIVSSNDDNDIKYIPIMNTTFAAQKMKVPIDVAKLGERD 258
Query: 187 SAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHK 246
S++LQQAS T GV+ +GL Q L T F + R+ + LP V++RASCF
Sbjct: 259 SSYLQQASDATNGVYLHIANPEGLIQTLSTAFFIEPSIRSLIILPTNSNVNYRASCFITG 318
Query: 247 NTIDMGYICSVCLSIYCKHLK--KCSTCGSVFGQ---AQTQSDEPSATNRKRK 294
++++G++CSVCL I K KC TCGS F + AQ + +KRK
Sbjct: 319 KSVNLGFVCSVCLCIMSIIPKEGKCPTCGSKFDEKILAQLRRGVVIPVKKKRK 371
>gi|71004806|ref|XP_757069.1| hypothetical protein UM00922.1 [Ustilago maydis 521]
gi|46096873|gb|EAK82106.1| hypothetical protein UM00922.1 [Ustilago maydis 521]
Length = 422
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/372 (26%), Positives = 152/372 (40%), Gaps = 101/372 (27%)
Query: 15 LVVVLLDTNPFFWS--------------SSSLSFSQFLTHVLAFLNAILTLNQLNQVVV- 59
+V++LD NP W+ SS ++ L ++ FLNA + + N + +
Sbjct: 36 FLVLVLDINPLAWTRRSESLDKGKYKQVSSDVALEDALAAIMIFLNAHMAMQHENGLAIY 95
Query: 60 IATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQN-----LEEFMNKDEQL------- 107
A G + +Y ++S ++ G G + S +T Q + F D+ L
Sbjct: 96 AAAGTGTAQLLYSTASFSAKATGTGVVNSAASTSAQKPDANTYQHFKLVDDHLEQGIRAT 155
Query: 108 -------GKQEPEG--------RIACSLLSGS--------LSMALCYIQRV--------- 135
K+ E + + LS S LS ALC++ R+
Sbjct: 156 CKSMFDRAKKAQEAVHASADSEAVKHATLSRSINVGIVSALSQALCHLNRLGLSDATDAA 215
Query: 136 -----------FRSGLLHP----------------QPRILCLQGSPDGPEQYVAIMNAIF 168
R+G + + RIL L + D QY+ +MN IF
Sbjct: 216 NTGNGIAATAQTRAGGANTAQGAGGSVGAGSIGSFKSRILILSVTQDASTQYIPMMNCIF 275
Query: 169 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK---------------PQQLDGLFQY 213
+AQ+ + ID C L +++ FLQQASY+T G + + L Q
Sbjct: 276 AAQKKGITIDVCKLFGKDTVFLQQASYLTSGTYFRLADDEDQSKSDTASATDMRSSLVQT 335
Query: 214 LLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCG 273
LLT + R + LP +DFRA+CFCH+ +D+GYICSVCLS++C C TC
Sbjct: 336 LLTTYLPSRSMRGVMNLPSLEKIDFRAACFCHRKIVDIGYICSVCLSLFCSPKPSCLTCR 395
Query: 274 SVFGQAQTQSDE 285
S F + Q E
Sbjct: 396 SKFPKETLQRYE 407
>gi|365762534|gb|EHN04068.1| Tfb4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 338
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 141/303 (46%), Gaps = 26/303 (8%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPE 158
+L K++ E S L+G++S L Y+ R+ + + + R+L L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 217
QY+ IMN IFSA + PID +G ++ S FLQQ + T GV+ + +GL QYL T
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATA 251
Query: 218 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSV 275
D R + P VDFR SC+ + +G+ICSVCL + KC C S
Sbjct: 252 MFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAIGFICSVCLCVLSIIPPGNKCPACDSQ 311
Query: 276 FGQ 278
F +
Sbjct: 312 FDE 314
>gi|151942841|gb|EDN61187.1| transcription initiation factor TFIIH subunit [Saccharomyces
cerevisiae YJM789]
gi|259150209|emb|CAY87012.1| Tfb4p [Saccharomyces cerevisiae EC1118]
gi|349581866|dbj|GAA27023.1| K7_Tfb4p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 338
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 141/303 (46%), Gaps = 26/303 (8%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPE 158
+L K++ E S L+G++S L Y+ R+ + + + R+L L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 217
QY+ IMN IFSA + PID +G ++ S FLQQ + T GV+ + +GL QYL T
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATA 251
Query: 218 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSV 275
D R + P VDFR SC+ + +G+ICSVCL + KC C S
Sbjct: 252 MFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAIGFICSVCLCVLSIIPPGNKCPACDSQ 311
Query: 276 FGQ 278
F +
Sbjct: 312 FDE 314
>gi|6325313|ref|NP_015381.1| Tfb4p [Saccharomyces cerevisiae S288c]
gi|62901135|sp|Q12004.1|TFB4_YEAST RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=General transcription and DNA repair
factor IIH subunit TFB4; Short=TFIIH subunit TFB4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|805037|emb|CAA89174.1| unknown [Saccharomyces cerevisiae]
gi|1314125|emb|CAA95001.1| unknown [Saccharomyces cerevisiae]
gi|190407994|gb|EDV11259.1| RNA polymerase II transcription factor B subunit 4 [Saccharomyces
cerevisiae RM11-1a]
gi|256268932|gb|EEU04279.1| Tfb4p [Saccharomyces cerevisiae JAY291]
gi|285815586|tpg|DAA11478.1| TPA: Tfb4p [Saccharomyces cerevisiae S288c]
gi|323350201|gb|EGA84348.1| Tfb4p [Saccharomyces cerevisiae VL3]
gi|392296067|gb|EIW07170.1| Tfb4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 338
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 141/303 (46%), Gaps = 26/303 (8%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPE 158
+L K++ E S L+G++S L Y+ R+ + + + R+L L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 217
QY+ IMN IFSA + PID +G ++ S FLQQ + T GV+ + +GL QYL T
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATA 251
Query: 218 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSV 275
D R + P VDFR SC+ + +G+ICSVCL + KC C S
Sbjct: 252 MFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAVGFICSVCLCVLSIIPPGNKCPACDSQ 311
Query: 276 FGQ 278
F +
Sbjct: 312 FDE 314
>gi|323331310|gb|EGA72728.1| Tfb4p [Saccharomyces cerevisiae AWRI796]
Length = 409
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 145/319 (45%), Gaps = 33/319 (10%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 83 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 142
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 143 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 202
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPE 158
+L K++ E S L+G++S L Y+ R+ + + + R+L L S D
Sbjct: 203 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 262
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 217
QY+ IMN IFSA + PID +G ++ S FLQQ + T GV+ + +GL QYL T
Sbjct: 263 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATA 322
Query: 218 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSV 275
D R + P VDFR SC+ + +G+ICSVCL + KC C S
Sbjct: 323 MFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAVGFICSVCLCVLSIIPPGNKCPACDSQ 382
Query: 276 FGQAQTQSDEPSATNRKRK 294
F DE KRK
Sbjct: 383 F-------DEHVIAKLKRK 394
>gi|323335143|gb|EGA76433.1| Tfb4p [Saccharomyces cerevisiae Vin13]
Length = 338
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 140/303 (46%), Gaps = 26/303 (8%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPE 158
+L K++ E S L+G++S L Y+ R+ + + + R+L L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 217
QY+ IMN IFSA + PID +G ++ S FLQQ + T GV+ + +GL QYL T
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATA 251
Query: 218 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSV 275
D R + P VDFR SC+ + G+ICSVCL + KC C S
Sbjct: 252 MFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAXGFICSVCLCVLSIIPPGNKCPACDSQ 311
Query: 276 FGQ 278
F +
Sbjct: 312 FDE 314
>gi|45187550|ref|NP_983773.1| ADL323Cp [Ashbya gossypii ATCC 10895]
gi|62901344|sp|Q75B93.1|TFB4_ASHGO RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|44982288|gb|AAS51597.1| ADL323Cp [Ashbya gossypii ATCC 10895]
gi|374106985|gb|AEY95893.1| FADL323Cp [Ashbya gossypii FDAG1]
Length = 341
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 131/299 (43%), Gaps = 27/299 (9%)
Query: 7 KLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
+L + SL+ +++DTNP W+ Q L + FLNA L+ N NQV VI
Sbjct: 17 QLVEETPSLLTLVIDTNPKLWAEFDREVGKKGQLMQVLKSTIVFLNAHLSFNNSNQVSVI 76
Query: 61 ATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE-----------QLGK 109
A Y+Y + S + F N DE Q K
Sbjct: 77 AACSRGIKYLYPQADDKEGSTKKKKSEDRSIINRNMYRGFRNVDEAVVEELYRVFQQESK 136
Query: 110 QEPEG--RIACSLLSGSLSMALCYIQRV-FRSGLLHPQPRILCL----QGSPDGPEQYVA 162
Q +G + S LSG++S L YI R+ + + + R+L + S D QY+
Sbjct: 137 QLEDGVPQPFRSTLSGAMSAGLTYINRITHETEGVSLKSRLLVITCGSSASKDEVFQYIP 196
Query: 163 IMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD 221
IMN IFSA + PID +G + S FLQQA+ T G + DGL QYL T D
Sbjct: 197 IMNCIFSATKMKCPIDVVKVGGVKESTFLQQATDATNGNYLHVANTDGLIQYLSTAMFID 256
Query: 222 LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 278
R ++ P VDFR SC+ + +G++CSVCL + KC C S F +
Sbjct: 257 PSLRQWVVKPNQSSVDFRTSCYLTGKVVAIGFVCSVCLCVLSIIPPGNKCPACDSEFDE 315
>gi|366988553|ref|XP_003674043.1| hypothetical protein NCAS_0A11040 [Naumovozyma castellii CBS 4309]
gi|342299906|emb|CCC67662.1| hypothetical protein NCAS_0A11040 [Naumovozyma castellii CBS 4309]
Length = 338
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 94/298 (31%), Positives = 133/298 (44%), Gaps = 26/298 (8%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQ------FLTHVLAFLNAILTLNQLNQVVV 59
S + + SL+ V++D P W+ ++ L +L FLNA L N NQV V
Sbjct: 16 SSITEETPSLLTVIVDITPKLWAELDEEINEKGNLINVLKSLLVFLNAHLAFNSSNQVAV 75
Query: 60 IATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ-----EPEG 114
IA Y++ +S + V +G+ L F N DE L + E E
Sbjct: 76 IAAHSQGIKYLFPKNSISVKGVNSGK-KDLSIINKDMYRRFRNVDETLVDELYALFEEEL 134
Query: 115 R-----IACSLLSGSLSMALCYIQRVFRS-GLLHPQPRILCLQ-----GSPDGPEQYVAI 163
+ S LSG++S L YI RV + + + R++ L S D QY+ I
Sbjct: 135 KQVNTVTQKSTLSGAMSAGLTYINRVTKELEAISLKSRLMVLTCGGKGESKDEIFQYIPI 194
Query: 164 MNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDL 222
MN IFSA + PID +G ++ S FLQQ + T G + + GL QYL T D
Sbjct: 195 MNCIFSATKIKCPIDVVKIGGSKESTFLQQTTDATNGAYLHVESTKGLIQYLATAMFIDP 254
Query: 223 HSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 278
R + P VDFR SC+ + +G+ICSVCL + KC C S F +
Sbjct: 255 SLRQIIVKPNHGSVDFRTSCYLTGKVVAVGFICSVCLCVLSIIPPGNKCPACDSEFDE 312
>gi|323346291|gb|EGA80581.1| Tfb4p [Saccharomyces cerevisiae Lalvin QA23]
Length = 313
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 139/301 (46%), Gaps = 26/301 (8%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPE 158
+L K++ E S L+G++S L Y+ R+ + + + R+L L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTI 217
QY+ IMN IFSA + PID +G ++ S FLQQ + T GV+ + +GL QYL T
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATA 251
Query: 218 FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSV 275
D R + P VDFR SC+ + G+ICSVCL + KC C S
Sbjct: 252 MFIDPSLRPIIVKPNHGSVDFRTSCYLTGRVVAXGFICSVCLCVLSIIPPGNKCPACDSQ 311
Query: 276 F 276
F
Sbjct: 312 F 312
>gi|401838123|gb|EJT41898.1| TFB4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 338
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 133/291 (45%), Gaps = 26/291 (8%)
Query: 14 SLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
SL+ V+++ P W++ S + L ++ FLNA L N N+V VIA
Sbjct: 24 SLLTVIVEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAHSQGI 83
Query: 68 DYVYDSSSTGNQSVGNGRMPSLCATLLQN--LEEFMNKDE----------QLGKQEPEGR 115
Y+Y S+T ++ + + ++ + F N DE ++ K + E
Sbjct: 84 KYLYPESTTTTEASKSEKKSRSDLKIINSDMYRRFRNVDEALVEEIYKLFEVEKNQIEQN 143
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPEQYVAIMNAIFSA 170
S L+G++S L Y+ R+ + + + R+L L S D QY+ IMN IFSA
Sbjct: 144 SQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSA 203
Query: 171 QRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQ 229
+ PID +G ++ S FLQQ + T GV+ GL QYL T D R +
Sbjct: 204 TKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVDSTQGLIQYLATAMFIDPSLRPIIV 263
Query: 230 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 278
P VDFR SC+ + +G+ICSVCL + KC C S F +
Sbjct: 264 KPNHGSVDFRTSCYLTGRVVAIGFICSVCLCVLSIIPPGNKCPACDSEFDE 314
>gi|341038752|gb|EGS23744.1| putative transcription factor [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 429
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 157/368 (42%), Gaps = 109/368 (29%)
Query: 10 SDDV-SLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ + L S+ + ++L F+NA L + NQV +IA+ N
Sbjct: 18 TDDIPSLRTIIIDTNPRAWAALADVLPLSKAIANILIFVNAHLAFSNSNQVAIIASHTNR 77
Query: 67 CDYVY---------DSSS---TGNQSVGNGRMPSLC---ATLLQNLEEFMNKDEQLGKQE 111
++Y SSS +S G+ P +LL ++ M+
Sbjct: 78 AVWLYPQPPEPLPSGSSSHDAAARKSATIGKYPQFAQIEKSLLSSIRALMDD-----TTP 132
Query: 112 PEGRIACSLLSGSLSMALCYIQRVFRS--------------------------------- 138
+ + +SG+L++AL +I + S
Sbjct: 133 SDLDTTTTQISGALTLALAHINKTALSLTASNTAAAAVATGHSLTAGSAASVAAKAASTS 192
Query: 139 ---GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASY 195
GL RIL + S QY+ MNA+F+A + + ID+ L ++ FL+QAS+
Sbjct: 193 TSAGLAGLHARILIISVSDSSAAQYIPTMNAVFAAAHARIAIDTLALRG-SATFLEQASF 251
Query: 196 ITGGVHHKPQQLDGLFQYLLTIFGTD-----------LHSRNFLQLPKPVG--------- 235
IT G + + GL QYL+ FG+ ++ + PKP G
Sbjct: 252 ITRGTFIRAAEPRGLLQYLMFGFGSGSAPSNPAAAAAAAEKSTIGGPKPSGAAAAQPAAG 311
Query: 236 ---------------------------VDFRASCFCHKNTIDMGYICSVCLSIYCKHLK- 267
VDFRA+CFCH+N +D G++CSVCLSI+C+
Sbjct: 312 TTKPGAAGKLPPGAAVTDLLMTPSAEAVDFRAACFCHRNVVDTGFVCSVCLSIFCEVPPG 371
Query: 268 -KCSTCGS 274
+C TCG+
Sbjct: 372 GECMTCGT 379
>gi|365757943|gb|EHM99813.1| Tfb4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 338
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/291 (30%), Positives = 133/291 (45%), Gaps = 26/291 (8%)
Query: 14 SLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
SL+ V+++ P W++ S + L ++ FLNA L N N+V VIA
Sbjct: 24 SLLTVIVEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAHSQGI 83
Query: 68 DYVYDSSSTGNQSVGNGRMPSLCATLLQN--LEEFMNKDE----------QLGKQEPEGR 115
Y+Y S+T ++ + + ++ + F N DE ++ K + E
Sbjct: 84 KYLYPESTTTTEASKSEKKSRSDLKIINSDMYRRFRNVDEALVEEIYKLFEVEKNQIEQN 143
Query: 116 IACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPEQYVAIMNAIFSA 170
S L+G++S L Y+ R+ + + + R+L L S D QY+ IMN IFSA
Sbjct: 144 SQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSA 203
Query: 171 QRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQ 229
+ PID +G ++ S FLQQ + T GV+ GL QYL T D R +
Sbjct: 204 TKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVDSTQGLIQYLATAMFIDPSLRPIIV 263
Query: 230 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFGQ 278
P VDFR SC+ + +G+ICSVCL + KC C S F +
Sbjct: 264 KPNHGSVDFRTSCYLTGRVVAIGFICSVCLCVLSIIPPGNKCPACDSEFDE 314
>gi|328352540|emb|CCA38939.1| RNA polymerase II transcription factor B subunit 4 [Komagataella
pastoris CBS 7435]
Length = 307
Score = 120 bits (300), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 133/260 (51%), Gaps = 31/260 (11%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVI-ATGYNS---- 66
SL+ V++DTNP W+ + + VL LNA L+LN N+V V+ ++ NS
Sbjct: 23 SLLAVVIDTNPLEWTKLKGVICLKELCKSVLVLLNAHLSLNSGNRVAVLTSSSLNSGPKF 82
Query: 67 -----CDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLG--KQEPEGRIACS 119
D Y+ + S + + + ++Q L+ ++ +E L QE +G IA
Sbjct: 83 LYPDPNDKTYEKRESLLSSDIHRQFKFVDQKIIQELQILLD-NEPLNPENQELKGSIA-- 139
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQ-------PRILCLQGSPDGPEQYVAIMNAIFSAQR 172
G++SMAL YI R+ + P+ ++L + S D +QYV MN IFSAQ+
Sbjct: 140 ---GAMSMALSYINRLTN---IEPESTGNTLRAKMLVISISDDSTQQYVPFMNCIFSAQK 193
Query: 173 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 232
V ID C +G +S+FLQQAS +T GV+ + + GL QYL T D R + LP
Sbjct: 194 MKVSIDVCKMGP-DSSFLQQASDVTNGVYMLIKNVHGLIQYLTTALFIDPSLRPIMVLPT 252
Query: 233 PVGVDFRASCFCHKNTIDMG 252
+DFRASCF ID+G
Sbjct: 253 NSDLDFRASCFVTNKVIDIG 272
>gi|315052780|ref|XP_003175764.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
gypseum CBS 118893]
gi|311341079|gb|EFR00282.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
gypseum CBS 118893]
Length = 413
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 86/139 (61%), Gaps = 3/139 (2%)
Query: 138 SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYIT 197
+G L + I+ + + D +QY+ IMN+IF+ QR +PID C L A ++ FLQQA T
Sbjct: 225 AGALQSRILIISVSSAADSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDAT 283
Query: 198 GGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSV 257
G++ G QYL+ F D +R L LP V VDFRA+CFCH+ +D+G++CS+
Sbjct: 284 RGIYMSLDSPRGFLQYLMLAFLPDQRARRNLILPTRVDVDFRAACFCHRKVVDVGFVCSI 343
Query: 258 CLSIYCKHLK--KCSTCGS 274
CLSI+C+ + C TCG+
Sbjct: 344 CLSIFCEPPEGANCLTCGT 362
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 11 DDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
+D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A+ +
Sbjct: 9 NDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYANKVAVVASHSHQAV 68
Query: 69 YVY 71
++Y
Sbjct: 69 WLY 71
>gi|403216997|emb|CCK71492.1| hypothetical protein KNAG_0H00770 [Kazachstania naganishii CBS
8797]
Length = 342
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 96/302 (31%), Positives = 138/302 (45%), Gaps = 46/302 (15%)
Query: 14 SLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
SL+ V++D P W + + + + L ++ FLNA L N NQV +IA+
Sbjct: 24 SLLTVVVDLTPKLWAEFDEETKEASNIIKMLRALIVFLNAHLAFNTSNQVAIIASHSQGI 83
Query: 68 DYVYDSSS----TGNQSVGN-----------GRMPSLCATLLQNLEEFMNKDEQLGKQEP 112
Y+Y SS T ++VG R ++ TL++ L +++G E
Sbjct: 84 KYLYPRSSNRSETEAETVGKKDQFIINPGMYSRFRNVDETLVEELYTLFK--QEMG--EV 139
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRSGLLHP------QPRILCLQ-GSPDGPEQ------ 159
E S L G++ AL Y R LLH + RI+ + G+ +G Q
Sbjct: 140 EKATQKSTLPGAMLAALAYTNR-----LLHDYETKSLKSRIMVMTCGNKNGTSQKEEIFQ 194
Query: 160 YVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIF 218
Y+ IMN IFSA + PID +G A+ S FLQQ + T G++ DGL QYL T
Sbjct: 195 YIPIMNCIFSAAKLKCPIDVVKIGGARKSTFLQQTTDATNGIYLHVDSTDGLVQYLSTAM 254
Query: 219 GTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVF 276
D R+ + P VDFR SCF + +GYICSVCL + +C C S F
Sbjct: 255 FIDPSLRSIIVKPNQGSVDFRTSCFLTGKVVAVGYICSVCLCVLSVLPPGNRCPACESEF 314
Query: 277 GQ 278
+
Sbjct: 315 DE 316
>gi|366998281|ref|XP_003683877.1| hypothetical protein TPHA_0A03670 [Tetrapisispora phaffii CBS 4417]
gi|357522172|emb|CCE61443.1| hypothetical protein TPHA_0A03670 [Tetrapisispora phaffii CBS 4417]
Length = 344
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 94/324 (29%), Positives = 151/324 (46%), Gaps = 47/324 (14%)
Query: 8 LYSDDV-SLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
L SD+ SL+ V++DT+P W+ S + L +L FLNA L N N+V VI
Sbjct: 17 LNSDETPSLLTVIIDTSPRLWAELDGDMKEDGSIIKVLRSMLVFLNAHLATNNANKVAVI 76
Query: 61 ATGYNSCDYVYD--------------SSSTGNQSVGNGRM----PSLCATLLQNLEEFMN 102
A Y+Y S+S + ++ N M ++ +L++ + +
Sbjct: 77 AAHSQGIKYLYPINTSHANKNKTNEISTSKKDLAIINPNMYRQFRNVDESLVEEIYKIFQ 136
Query: 103 KDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCL--------QGS 153
K++ ++P+ + S L+G++S L YI R+ ++ + + R++ +
Sbjct: 137 KEKAEYLEKPKQK---STLAGAMSAGLTYINRIVKNEENYTLKSRLVVITCGGNAYTDNK 193
Query: 154 PDGPEQYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQ 212
+ QY+ IMN IFSA + PID +G + S FLQQA+ T G++ + GL Q
Sbjct: 194 VEEVIQYIPIMNCIFSATKMKCPIDVVKIGGSSESTFLQQATDATSGIYLYVKDYHGLIQ 253
Query: 213 YLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--KHLKKCS 270
YLLT + R+ + P +DFR SC+ + +G+ICS+CL + KC
Sbjct: 254 YLLTAMFIEPSLRSTIVKPNSKSIDFRTSCYITGKVVAVGFICSICLCVMSILPPNNKCP 313
Query: 271 TCGSVFGQAQTQSDEPSATNRKRK 294
C SVF DE KRK
Sbjct: 314 ACDSVF-------DEKVIVKLKRK 330
>gi|150865476|ref|XP_001384710.2| hypothetical protein PICST_83789 [Scheffersomyces stipitis CBS
6054]
gi|149386732|gb|ABN66681.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 376
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 102/357 (28%), Positives = 158/357 (44%), Gaps = 74/357 (20%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+DD SL+ V+LD +P W S + +L F+NA L+LN NQV IA+
Sbjct: 19 NDDPSLLTVILDVSPAGWYRIRDQTSIDELAKSLLVFMNAHLSLNNSNQVAFIASTPQKS 78
Query: 68 DYV-------YDSSSTGNQSVG-----NGRMPSLCATLLQNLEEFMNKDEQL-------- 107
++ YD T + S G + + P+L + + +F DE +
Sbjct: 79 KFLFPNPEIDYDEIRTSSSSSGSASNQHQKTPTLVSKDM--YRQFRVVDEAVLEELNVVF 136
Query: 108 -----GKQEPEGRIACSLLSGSLSMALCYIQRVFR------------------------S 138
G Q+ S LSG+LSMAL Y R+ S
Sbjct: 137 DEIANGIQDINNN---STLSGALSMALTYTNRMLTLDQSISTTTASAINSTTSMGAGSGS 193
Query: 139 G--------------LLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 184
G + + RIL + + + +Y+ +MN+IF+AQ+ ID LG
Sbjct: 194 GNTATNSSTSNPSNSITSMKSRILIVTANDEDDVKYIPVMNSIFAAQKMRTSIDIAKLGF 253
Query: 185 QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFC 244
++S++LQQA+ T G++ G+ Q L + F + R F+ LP V++RASCF
Sbjct: 254 EDSSYLQQAADATNGIYFHVHDPRGIVQTLTSAFFIEPSIRPFIILPTNSNVNYRASCFV 313
Query: 245 HKNTIDMGYICSVCLSIYCK--HLKKCSTCGSVFGQAQTQ--SDEPSATNRKRKTTD 297
++D+G++CSVCL I K KC C SVF + S PS ++K++ D
Sbjct: 314 TGKSVDIGFVCSVCLCIMSKIPPSGKCPACESVFDEKIIAQLSKGPSVLSKKKRKID 370
>gi|367035398|ref|XP_003666981.1| hypothetical protein MYCTH_2312237 [Myceliophthora thermophila ATCC
42464]
gi|347014254|gb|AEO61736.1| hypothetical protein MYCTH_2312237 [Myceliophthora thermophila ATCC
42464]
Length = 433
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 101/374 (27%), Positives = 155/374 (41%), Gaps = 115/374 (30%)
Query: 10 SDDV-SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ L S+ + ++L F+N L + NQV +IA N
Sbjct: 18 TDDIPSLCTIIIDTNPRAWAALNEVLPVSKAIANILVFVNTHLAFSNSNQVALIAAHSNR 77
Query: 67 CDYVY---------------DSSSTGNQSVGNGRMPSLC---ATLLQNLEEFMNK--DEQ 106
++Y D+SS +++ + P +LL +L ++ D
Sbjct: 78 AVWLYPTPPKQAAPRDVDMQDASSNASKASSANKYPQFAQIEKSLLTSLRALIDDTTDAD 137
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRVFRS---------------------------- 138
L P+ +SG+L++AL +I + S
Sbjct: 138 LSTTTPQ-------ISGALTLALAHINKTALSFSASATAAAAHAAATTGTAVTAGATVGP 190
Query: 139 -----------GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS 187
GL RIL + S P QY+ MNA+F+A + V ID+ L ++
Sbjct: 191 APVASTSTSSGGLAGLHARILIISVSDSAPAQYIPTMNAVFAAAHARVAIDTLALRG-SA 249
Query: 188 AFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTD-------------------------- 221
FL+QAS+IT G + + GL QYL+ FG+
Sbjct: 250 TFLEQASFITRGTFVRAAEPRGLLQYLMFGFGSGSAPSHPSGGADPGKGPAAPKTTAASV 309
Query: 222 -----------------LHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK 264
+ L P VDFRA+CFCH+N ID GY+CSVCLSI+C+
Sbjct: 310 PGGGPGGRRKTGRLGLGASVADLLLTPSADAVDFRAACFCHRNVIDTGYVCSVCLSIFCE 369
Query: 265 --HLKKCSTCGSVF 276
+C TCG+V
Sbjct: 370 VPPGGECLTCGTVL 383
>gi|195111388|ref|XP_002000261.1| GI10128 [Drosophila mojavensis]
gi|193916855|gb|EDW15722.1| GI10128 [Drosophila mojavensis]
Length = 334
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 140/301 (46%), Gaps = 12/301 (3%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
S L ++ ++VV D N + F++ + + F NA L + N +V+ +
Sbjct: 21 SGLPEKNMLIIVVDYDANQSYVKRDLELFTKVVCSLTMFGNAYLLQSSENDLVIWSCSSY 80
Query: 66 SCDYVYDSSSTGNQSVGNGRMPSLCAT---LLQNLEEFMNKDEQLGK---QEPEGRIACS 119
+ + +Y + ++ L L +++D + K +E E + +
Sbjct: 81 AVNVIYPEKLIDPTKDSDSQLEELAVVESLTRMRLFNLISQDITVMKRQAKEEEEQTVTA 140
Query: 120 LLSGSLSMALCYIQRVFR--SGLLHPQPRILCLQGSPDGPEQYVAI-MNAIFSAQRSMVP 176
LL G+++M L Y+ R R + + H + RIL + GS + P + MNA A R V
Sbjct: 141 LLPGTVAMVLSYLSRCRREVAKVAHIRGRILIVSGSKEPPIPLATMQMNAFQVAARMGVV 200
Query: 177 IDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGV 236
ID C L ++S L+ A+ ITGG + D L LL +F H R L P
Sbjct: 201 IDVCALELESSYMLRHAADITGGFYFSTSNFDTLSGVLLGLFLASPHVRQHLNYPVQPQA 260
Query: 237 DFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFG---QAQTQSDEPSATNRKR 293
D RA CFCH ++MG++CS CL+++CK+ C C ++F + Q D +A R+R
Sbjct: 261 DLRAMCFCHSKLVEMGFVCSSCLTVFCKYTPICGKCETIFKPPQKLQMYIDNRAAQRRQR 320
Query: 294 K 294
+
Sbjct: 321 E 321
>gi|50547937|ref|XP_501438.1| YALI0C04367p [Yarrowia lipolytica]
gi|62901295|sp|Q6CD24.1|TFB4_YARLI RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|49647305|emb|CAG81737.1| YALI0C04367p [Yarrowia lipolytica CLIB122]
Length = 340
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 141/300 (47%), Gaps = 33/300 (11%)
Query: 11 DDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCD 68
D SL+ +++D + W S +S S+ + +L F+NA L L+ N V VI +
Sbjct: 21 DTPSLLSIIIDAHVPSWEEIKSQISISEAVASILVFINAHLALHNSNSVNVIGYNASGAR 80
Query: 69 YVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQ------------------ 110
+Y S G +S + ++ + KD + +Q
Sbjct: 81 ILYPPKS-GVESTRSKEREERSESVSDGEQAPSKKDHSMYRQFKTVDEVVQTELWNMLNH 139
Query: 111 ---EPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQ-GSPDGPEQYVAIMNA 166
E + S +SG+LS+AL +I + + RIL L G + QY+ MN
Sbjct: 140 TNYVEEEKQHNSAISGALSLALGFINKHVFVDESRMRARILLLTVGHKNETIQYIPTMNC 199
Query: 167 IFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLD-----GLFQYLLTIFGT 220
IF+AQ+ +P+D C LG + FLQQA T G++ + + GL QYLL+ F +
Sbjct: 200 IFAAQKLKIPVDVCKLGPGSDQVFLQQACDSTHGIYMDISEKNSKTPKGLVQYLLSGFIS 259
Query: 221 DLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTCGSVFGQ 278
D R + LP VDFRA+CF K +D+GY+CSVCL I + ++C TC + + +
Sbjct: 260 DPSLRPHIVLPTQSNVDFRAACFLTKQVVDIGYVCSVCLCIMSQIPSNRRCPTCDTTYSE 319
>gi|255727412|ref|XP_002548632.1| hypothetical protein CTRG_02929 [Candida tropicalis MYA-3404]
gi|240134556|gb|EER34111.1| hypothetical protein CTRG_02929 [Candida tropicalis MYA-3404]
Length = 369
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/340 (28%), Positives = 156/340 (45%), Gaps = 52/340 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+DD SL+ ++LD + W + +S +L FLN L+LN NQV I +
Sbjct: 20 NDDPSLLTIILDLSLKGWFNIKDLISIQDITKSLLVFLNGHLSLNNSNQVAFIVSSSKGS 79
Query: 68 DYVY-DSSSTGNQSVGN--GRMPSLCA-------TLLQNLEEFMNK---DEQLGKQEPEG 114
++Y D ++ GN + + G+ P + ++L L +F+ + + ++
Sbjct: 80 KFLYPDLTTNGNNTTEDFGGQFPGMYRQFKMVDQSVLHQLNKFIEEVMATPEEEEENGRR 139
Query: 115 RIACSLLSGSLSMALCYIQRVF---------------------------------RSGLL 141
R + L+G+LSMAL Y R+
Sbjct: 140 RRTTNTLTGALSMALTYTNRMLTLDQTITTTTASAMTTSTLESTSNNNTSSSGSASVSTT 199
Query: 142 HPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVH 201
+ R+L + + D +Y+ +MN IF+AQ+ V ID LG +NS++LQQAS T GV+
Sbjct: 200 GIKSRVLIVSANDDDDIKYIPLMNCIFAAQKMKVSIDVAKLGHKNSSYLQQASDATRGVY 259
Query: 202 HKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI 261
+ G+ Q L T F + + R ++ LP V++RASCF ++D+GY+CSVCL I
Sbjct: 260 LHIEDPKGIIQVLSTAFFIEPNLRPYIILPTNSNVNYRASCFLTGKSVDLGYVCSVCLCI 319
Query: 262 YCK--HLKKCSTCGSVFGQAQTQS--DEPSATNRKRKTTD 297
K KC C S F + EP ++K++ D
Sbjct: 320 MSKLPDNGKCPACDSAFDKKIINELIREPQVISKKKRKLD 359
>gi|363751126|ref|XP_003645780.1| hypothetical protein Ecym_3480 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889414|gb|AET38963.1| Hypothetical protein Ecym_3480 [Eremothecium cymbalariae
DBVPG#7215]
Length = 341
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 147/320 (45%), Gaps = 43/320 (13%)
Query: 7 KLYSDDVSLVVVLLDTNPFFWSSSSLSFSQ------FLTHVLAFLNAILTLNQLNQVVVI 60
+L D SL+ +++DTNP W+ Q L ++ FLNA L+ N NQV VI
Sbjct: 17 QLVEDTPSLLTLVIDTNPKLWADLDKEVGQEGQLLQALKSIIIFLNAHLSFNNSNQVSVI 76
Query: 61 ATGYNSCDYVY-------DSSSTG----NQSVGNGRM----PSLCATLLQNLEEFMNK-- 103
A Y+Y D S ++S+ N M ++ T+++ L + +
Sbjct: 77 AAYSRGIKYLYPPADELEDMSEKKTLHEDKSIINRDMYRGFRNVDETVVEELYKLFIQEI 136
Query: 104 -DEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGL-LHPQPRILCLQ-GSPDGPE-- 158
D++ K +P S LSG++S L YI R+ + + R+L + GS G +
Sbjct: 137 NDQENSKIQP----IKSTLSGAMSAGLTYINRIVKENESTSLKSRLLVITCGSNAGKDEI 192
Query: 159 -QYVAIMNAIFSAQRSMVPIDSCYLGA-QNSAFLQQASYITGGVHHKPQQLDGLFQYLLT 216
QY+ IMN IFSA + ID +G + S FLQQA+ T G + + +GL QYL T
Sbjct: 193 FQYIPIMNCIFSATKMRCSIDVVKIGGTEESTFLQQATDATNGNYLHVENTEGLIQYLST 252
Query: 217 IFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGS 274
D R ++ P VDFR SC+ + +G++CSVCL + KC C +
Sbjct: 253 AMFIDPSLRQWIVKPNQSAVDFRTSCYLTGTVVAIGFVCSVCLCVLSIIPPENKCPACDA 312
Query: 275 VFGQAQTQSDEPSATNRKRK 294
F DE KRK
Sbjct: 313 EF-------DEKVVAKLKRK 325
>gi|326480715|gb|EGE04725.1| TFIIH basal transcription factor complex p34 subunit [Trichophyton
equinum CBS 127.97]
Length = 415
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 82/130 (63%), Gaps = 3/130 (2%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQ 206
I+ + + D +QY+ IMN+IF+ QR +PID C L A ++ FLQQA T G++
Sbjct: 236 IISVSSAADSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATRGIYMSLDS 294
Query: 207 LDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL 266
G QYL+ F D +R L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+
Sbjct: 295 PRGFLQYLMLAFLPDQRARRNLILPTRVDVDFRAACFCHRKVVDVGFVCSICLSIFCEPP 354
Query: 267 K--KCSTCGS 274
+ C TCG+
Sbjct: 355 EGANCLTCGT 364
Score = 46.2 bits (108), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S ++D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A
Sbjct: 2 ADSGAAANDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYANKVAVVA 61
Query: 62 TGYNSCDYVY 71
+ + ++Y
Sbjct: 62 SHNHQAVWLY 71
>gi|326473589|gb|EGD97598.1| transcription factor TFIIH subunit Tfb4 [Trichophyton tonsurans CBS
112818]
Length = 415
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/130 (43%), Positives = 82/130 (63%), Gaps = 3/130 (2%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQ 206
I+ + + D +QY+ IMN+IF+ QR +PID C L A ++ FLQQA T G++
Sbjct: 236 IISVSSAADSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATRGIYMSLDS 294
Query: 207 LDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL 266
G QYL+ F D +R L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+
Sbjct: 295 PRGFLQYLMLAFLPDQRARRNLILPTRVDVDFRAACFCHRKVVDVGFVCSICLSIFCEPP 354
Query: 267 K--KCSTCGS 274
+ C TCG+
Sbjct: 355 EGANCLTCGT 364
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S ++D SL+ V+LDTNP W+ +L S +T++L F+NA L N N+V V+A
Sbjct: 2 ADSGAAANDPSLLTVILDTNPHAWAQLQETLPLSSAVTNLLVFINAHLACNYANKVAVVA 61
Query: 62 TGYNSCDYVY 71
+ + ++Y
Sbjct: 62 SHNHQAVWLY 71
>gi|388851454|emb|CCF54856.1| related to TFIIH basal transcription factor complex p34 subunit
[Ustilago hordei]
Length = 423
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 60/149 (40%), Positives = 85/149 (57%), Gaps = 16/149 (10%)
Query: 144 QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK 203
+ RIL L +PD QY+ +MN IF+AQ+ + ID C L ++ FLQQASY+T G + +
Sbjct: 250 KSRILILSVTPDASTQYIPMMNCIFAAQKKGITIDVCKLFGSDTVFLQQASYLTSGTYFR 309
Query: 204 ------PQQLDG----------LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKN 247
+++G L Q LLT + R + LP +DFRA+CFCH+
Sbjct: 310 LSDDSDALKVNGKEGITDMRSSLVQTLLTTYLPSRSMRGVMNLPTLEEIDFRAACFCHRK 369
Query: 248 TIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+D+GYICSVCLS++C+ C TC S F
Sbjct: 370 IVDIGYICSVCLSLFCQPRPFCLTCRSKF 398
>gi|296815720|ref|XP_002848197.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
otae CBS 113480]
gi|238841222|gb|EEQ30884.1| TFIIH basal transcription factor complex p34 subunit [Arthroderma
otae CBS 113480]
Length = 413
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 84/138 (60%), Gaps = 3/138 (2%)
Query: 139 GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITG 198
G L + I+ + + D +QY+ IMN+IF+ QR +PID C L A ++ FLQQA T
Sbjct: 226 GSLQSRILIVSVSSAADSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATR 284
Query: 199 GVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVC 258
G++ G QYL+ F D R L LP V VDFRA+CFCH+ +D+G++CS+C
Sbjct: 285 GIYMSVDSPRGFLQYLMLAFLPDQRVRRNLVLPTRVDVDFRAACFCHRKVVDVGFVCSIC 344
Query: 259 LSIYCKHLK--KCSTCGS 274
LSI+C+ + C TCG+
Sbjct: 345 LSIFCEPPEGANCLTCGT 362
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S S D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A
Sbjct: 2 AESTSASTDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYSNKVAVVA 61
Query: 62 TGYNSCDYVY 71
+ + ++Y
Sbjct: 62 SHSHQAVWLY 71
>gi|385301449|gb|EIF45638.1| subunit of TFIIH complex [Dekkera bruxellensis AWRI1499]
Length = 219
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/185 (42%), Positives = 99/185 (53%), Gaps = 15/185 (8%)
Query: 94 LQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP--QPRILCLQ 151
LQNL+ + K E K LSG+LS AL YI R F++ H + RI+C+
Sbjct: 3 LQNLKSLVGKGETHIK---------GTLSGALSQALSYINR-FQNSDEHSGMKARIVCIS 52
Query: 152 GSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLF 211
S D YV+IMN+IF+AQ+ V +D C LG NS FLQQAS T GV+ GL
Sbjct: 53 VSGDNTLPYVSIMNSIFAAQKQKVSVDVCKLGP-NSTFLQQASDSTNGVYIYIXHPLGLI 111
Query: 212 QYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKC 269
QYL T D R + LP +DFRASCF +D+GY+CSVCL I + C
Sbjct: 112 QYLSTALFIDPMLRPMVVLPTNTNIDFRASCFITNKVVDIGYVCSVCLCILSVIPEDEIC 171
Query: 270 STCGS 274
TC S
Sbjct: 172 PTCHS 176
>gi|320594208|gb|EFX06611.1| transcription factor tfiih subunit [Grosmannia clavigera kw1407]
Length = 429
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 146/350 (41%), Gaps = 106/350 (30%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP W++ + L S+ + ++L F+N+ L L+ N+V V+A+ N ++Y
Sbjct: 20 SLLTIVLDTNPRAWAALAAVLPLSKAVANILVFVNSHLALSSTNRVAVVASHCNRAVWLY 79
Query: 72 DSSS-----------------TGNQSVGNGRMPS--------------------LCATLL 94
+ + + + PS + TLL
Sbjct: 80 PTPAGSSLLPKKPPSDGLDVDMADAPASHPHRPSHPDPADQSGRSANKFPQFREIETTLL 139
Query: 95 QNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVF------------------ 136
Q++ + ++ E +LLSG+L++AL +I +
Sbjct: 140 QSVHDLVSSTAAADLDE-----TTTLLSGALTLALAHINKTALTIPAAAAAANDGGSGGK 194
Query: 137 -------------------------------RSGLLHP------QPRILCLQGSPDGPEQ 159
RSG P RIL + S P Q
Sbjct: 195 RSRPRPGGVLAGSATSGNAKKTGTSAGLADSRSGKTDPVDDVGLHARILVISVSDSSPAQ 254
Query: 160 YVAIMNAIFSAQRSMVPIDSCYL-GAQNSAFLQQASYITGG--VHHKPQQLDGLFQYLLT 216
Y+A MNA+F+A + V ID L GA + FLQQA+YIT G V Q GL YL+
Sbjct: 255 YIATMNAVFAAAHAGVAIDVLALRGA--ATFLQQAAYITRGTFVRVGADQKHGLLAYLML 312
Query: 217 IF--GTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK 264
F + L P VDFRA+CFCH+ +D G++CSVCLSI+C+
Sbjct: 313 AFNAASSHDVAQHLVAPSADAVDFRAACFCHRRVVDTGFVCSVCLSIFCE 362
>gi|302656245|ref|XP_003019878.1| hypothetical protein TRV_06076 [Trichophyton verrucosum HKI 0517]
gi|291183651|gb|EFE39254.1| hypothetical protein TRV_06076 [Trichophyton verrucosum HKI 0517]
Length = 517
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 3/130 (2%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQ 206
I+ + + + +QY+ IMN+IF+ QR +PID C L A ++ FLQQA T G++
Sbjct: 338 IISVSSAANSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATRGIYMSLDS 396
Query: 207 LDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL 266
G QYL+ F D +R L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+
Sbjct: 397 PRGFLQYLMLAFLPDQRARRNLILPTRVDVDFRAACFCHRKVVDVGFVCSICLSIFCEPP 456
Query: 267 K--KCSTCGS 274
+ C TCG+
Sbjct: 457 EGANCLTCGT 466
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
+ L S D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A+
Sbjct: 107 TDLISPDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYANKVAVVASH 166
Query: 64 YNSCDYVY 71
+ ++Y
Sbjct: 167 SHQAVWLY 174
>gi|327299656|ref|XP_003234521.1| transcription factor TFIIH subunit Tfb4 [Trichophyton rubrum CBS
118892]
gi|326463415|gb|EGD88868.1| transcription factor TFIIH subunit Tfb4 [Trichophyton rubrum CBS
118892]
Length = 413
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/130 (43%), Positives = 82/130 (63%), Gaps = 3/130 (2%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQ 206
I+ + + + +QY+ IMN+IF+ QR +PID C L A ++ FLQQA T G++
Sbjct: 234 IISVSSAANSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATRGIYMSLDS 292
Query: 207 LDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL 266
G QYL+ F D +R L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+
Sbjct: 293 PRGFLQYLMLAFLPDQRARRNLILPTRVDVDFRAACFCHRKVVDVGFVCSICLSIFCEPP 352
Query: 267 K--KCSTCGS 274
+ C TCG+
Sbjct: 353 EGANCLTCGT 362
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S ++D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A
Sbjct: 2 ADSGAAANDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYANKVAVVA 61
Query: 62 TGYNSCDYVY 71
+ + ++Y
Sbjct: 62 SHSHQAVWLY 71
>gi|444724893|gb|ELW65479.1| Tectonic-2 [Tupaia chinensis]
Length = 805
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 150 LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDG 209
++ + D QY+ MN IF+AQ+ + ID+C L + +S LQQA ITGG++ K Q+
Sbjct: 10 IKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDS-DSGLLQQACDITGGLYLKVPQMPS 68
Query: 210 LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIY 262
L QYLL +F D R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+
Sbjct: 69 LLQYLLWVFLPDQDQRSQLTLPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIF 121
>gi|354543147|emb|CCE39865.1| hypothetical protein CPAR2_602840 [Candida parapsilosis]
Length = 381
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 97/355 (27%), Positives = 157/355 (44%), Gaps = 74/355 (20%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+D+ SL+ ++LD +P W + +S+S +L FLN L++N NQV IA+ ++
Sbjct: 19 NDEPSLLTIILDISPKGWYNIRNSISLQDVAKSLLVFLNGHLSINNSNQVAFIASSPHTS 78
Query: 68 DYVYDSSSTGNQSVGNGR----------MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
++Y + N G + ++ +LQ L++F+ ++ +Q
Sbjct: 79 KFLYPHPTNANADSGITKSKISPGMYRQFKNVDEVVLQELDQFV---QETSQQLHNATAR 135
Query: 118 CSLLSGSLSMALCYIQRVFRSGLLHPQ--------------------------------- 144
S ++G++SMAL Y +R +L
Sbjct: 136 HSSITGAISMALTY---TYRMSILDQSIQTTTAAAINTSTMSSAKQSEVAAASSSTTAST 192
Query: 145 ---------------PRILCLQGSPDGPE--QYVAIMNAIFSAQRSMVPIDSCYLGAQNS 187
RIL + + DG + Y+ +MN IF+AQ+ V ID LG +NS
Sbjct: 193 TSATAAVSSSSTSLKSRILIVSAN-DGDDSINYIPLMNCIFTAQKLKVSIDVAKLGFKNS 251
Query: 188 AFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKN 247
++LQQAS T GV+ + G+ Q L T F + R ++ LP V+++ASCF K
Sbjct: 252 SYLQQASDATNGVYLHIEDPRGITQVLATAFFIEPSLRPYIILPTNTQVNYKASCFITKK 311
Query: 248 TIDMGYICSVCLSIYCK--HLKKCSTCGSVFGQAQTQ--SDEPS-ATNRKRKTTD 297
+D+G++CSVCL I KC C S F + + P T +KRK D
Sbjct: 312 PVDVGFVCSVCLCIMSSIPDDGKCPACSSDFDKRSINELTKIPQVVTKKKRKLED 366
>gi|410082137|ref|XP_003958647.1| hypothetical protein KAFR_0H01020 [Kazachstania africana CBS 2517]
gi|372465236|emb|CCF59512.1| hypothetical protein KAFR_0H01020 [Kazachstania africana CBS 2517]
Length = 328
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/318 (30%), Positives = 138/318 (43%), Gaps = 39/318 (12%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLNQVVV 59
S + + SL+ V++D P W+ + S L +L FLNA L N NQV V
Sbjct: 16 STVLEETPSLLAVIIDIAPKLWAEFDEEKDTEGSIINVLQALLVFLNAHLAFNTSNQVAV 75
Query: 60 IATGYNSCDYVYDSSSTGNQSVGNG-------------RMPSLCATLLQNLEEFMNKDEQ 106
IA Y+Y ++ V R ++ L++ L K+EQ
Sbjct: 76 IAAHSQGIKYLYPENNINKNDVLKSDKDLSIINKGMYRRFRNVDEVLVEELYSLF-KEEQ 134
Query: 107 LGKQEPEGRIACSLLSGSLSMALCYIQRVFRS-GLLHPQPRIL---CLQGSPDGPE--QY 160
E + S L G++S L Y+ R+ + L + R++ C G + E QY
Sbjct: 135 ---NELDKITQKSTLPGAISAGLTYVNRISKEMETLSLKSRLMVLTCGSGMANKEEIFQY 191
Query: 161 VAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFG 219
+ IMN IFSA + P+D +G ++ S FLQQ + T GV+ + GL QYL T
Sbjct: 192 IPIMNCIFSATKLKCPVDVVKIGGSKESTFLQQTTDATHGVYLHVETTKGLIQYLTTAMF 251
Query: 220 TDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVFG 277
D R + P VDFR SC+ + +G+ICSVCL + KC C S F
Sbjct: 252 IDPSLRQIIVKPNQGSVDFRTSCYLTGKVVAVGFICSVCLCVLSIIPPGNKCPACDSEF- 310
Query: 278 QAQTQSDEPSATNRKRKT 295
DE K+KT
Sbjct: 311 ------DERVINKLKKKT 322
>gi|443895518|dbj|GAC72864.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB4 [Pseudozyma antarctica
T-34]
Length = 425
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 15/148 (10%)
Query: 144 QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVH-- 201
+ RIL L + D QY+ +MN IF+AQ+ + ID C L ++ FLQQASY+T G +
Sbjct: 253 KSRILILSVTQDASTQYIPMMNCIFAAQKKGITIDVCKLLGNDTVFLQQASYLTSGTYFR 312
Query: 202 ----------HKPQQLD---GLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNT 248
+ +D L Q LLT + R+ + LP +DFRA+CFCH+
Sbjct: 313 LSDEQAGPSGQEASAIDLRSALVQTLLTTYLPSRSMRSSMNLPTLEEIDFRAACFCHRKI 372
Query: 249 IDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+D+GYICSVCLS++C+ C TC S F
Sbjct: 373 VDVGYICSVCLSLFCQPRPFCLTCRSKF 400
>gi|302496747|ref|XP_003010374.1| hypothetical protein ARB_03075 [Arthroderma benhamiae CBS 112371]
gi|291173917|gb|EFE29734.1| hypothetical protein ARB_03075 [Arthroderma benhamiae CBS 112371]
Length = 414
Score = 114 bits (284), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 82/130 (63%), Gaps = 3/130 (2%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQ 206
I+ + + + +QY+ IMN+IF+ QR +PID C L A ++ FLQQA T G++
Sbjct: 235 IISVSSAANSAQQYIPIMNSIFACQRLHIPIDICKL-AGDAVFLQQACDATRGIYMSLDS 293
Query: 207 LDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL 266
G QYL+ F D +R L LP V VDFRA+CFCH+ +++G++CS+CLSI+C+
Sbjct: 294 PRGFLQYLMLAFLPDQRARRNLILPTRVDVDFRAACFCHRKVVNVGFVCSICLSIFCEPP 353
Query: 267 K--KCSTCGS 274
+ C TCG+
Sbjct: 354 EGANCLTCGT 363
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 4 APSKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
A S ++D SL+ V+LDTNP W+ +L S + ++L F+NA L N N+V V+A
Sbjct: 2 ADSGAAANDPSLLTVILDTNPHAWAQLQETLPLSSAVANLLVFINAHLACNYANKVAVVA 61
Query: 62 TGYNSCDYVY 71
+ + ++Y
Sbjct: 62 SHSHQAVWLY 71
>gi|50303925|ref|XP_451910.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|62901298|sp|Q6CVX9.1|TFB4_KLULA RecName: Full=RNA polymerase II transcription factor B subunit 4;
AltName: Full=RNA polymerase II transcription factor B
34 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p34 subunit
gi|49641042|emb|CAH02303.1| KLLA0B08569p [Kluyveromyces lactis]
Length = 337
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 97/299 (32%), Positives = 136/299 (45%), Gaps = 42/299 (14%)
Query: 11 DDVSLVVVLLDTNPFFW--------------SSSSLSFSQFLTHVLAFLNAILTLNQLNQ 56
D SL+ V++DT+ W SS + L ++ FLNA L N NQ
Sbjct: 21 DTPSLLTVVVDTSIHSWVQLTKQQSGSGSEGSSGEKQLIEALKSIVVFLNAHLAFNSGNQ 80
Query: 57 VVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDE-------QLGK 109
V +IA Y+Y S+ + PS+ F N DE +L K
Sbjct: 81 VCLIAAHSEGMKYLYPSADSK---------PSMSMVSSDMYRGFRNVDEIVVEQWYRLFK 131
Query: 110 QEPEGRIAC----SLLSGSLSMALCYIQRVFRSGL-LHPQPRILCLQ-GSPDGPE---QY 160
+E EG+ + S LSG++S AL Y+ R+ + + R+L + G+ G + QY
Sbjct: 132 EELEGQESKVSMKSSLSGAMSSALTYVNRILKENENTSLRSRLLVITCGTSQGKDEIFQY 191
Query: 161 VAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFG 219
+ IMN IFSA + ID +G S FLQQA+ T GV+ + GL QYL T
Sbjct: 192 IPIMNCIFSATKMKCSIDVVKIGGGIESTFLQQATDATSGVYLHVENTRGLIQYLSTAMF 251
Query: 220 TDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVF 276
D RN + P VDFR SCF + +G++CSVCL + +KC C S F
Sbjct: 252 IDPSLRNVIIKPNQGSVDFRTSCFLTGKVVAVGFVCSVCLCVLSVIPPGQKCPACDSPF 310
>gi|343426778|emb|CBQ70306.1| related to TFIIH basal transcription factor complex p34 subunit
[Sporisorium reilianum SRZ2]
Length = 422
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/148 (39%), Positives = 83/148 (56%), Gaps = 15/148 (10%)
Query: 144 QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK 203
+ RIL L + D QY+ +MN IF+AQ+ + ID C L ++ FLQQASY+T G + +
Sbjct: 251 KSRILILSVTQDASTQYIPMMNCIFAAQKRGITIDVCKLFGSDTVFLQQASYLTSGTYFR 310
Query: 204 ----PQQLDG-----------LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNT 248
+Q +G L Q LLT + R + LP +DFR +CFCH+
Sbjct: 311 LADDHEQSNGDKAGAIDMRSSLVQTLLTTYLPSRSMRGVMNLPTLEEIDFRTACFCHRRI 370
Query: 249 IDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+D+GYICSVCLS++C+ C TC S F
Sbjct: 371 VDVGYICSVCLSLFCQPRPFCLTCRSKF 398
>gi|239611920|gb|EEQ88907.1| transcription factor TFIIH subunit Tfb4 [Ajellomyces dermatitidis
ER-3]
Length = 425
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 8/141 (5%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK-PQ 205
I+ L + + Y+ IMN+IF+ QR +PID L A ++AFLQQAS T G++
Sbjct: 245 IISLSSTTHAAQHYIPIMNSIFACQRLHIPIDILKL-AGDAAFLQQASDATRGIYIPVTS 303
Query: 206 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKH 265
G QYL+ F D +R L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+
Sbjct: 304 HPAGFLQYLMLGFLPDQRARAHLVLPSRVDVDFRAACFCHRRVVDVGFVCSICLSIFCEP 363
Query: 266 L------KKCSTCGSVFGQAQ 280
L +C TCGS G +
Sbjct: 364 LGGVDGVAECLTCGSQLGVGE 384
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+ SL FS + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 21 SLLTVILDTNPHAWARLEPSLPFSAAIANLLVFINAHLACNYANKVAVVASHCHHATWLY 80
>gi|327352824|gb|EGE81681.1| transcription factor TFIIH subunit Tfb4 [Ajellomyces dermatitidis
ATCC 18188]
Length = 426
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 8/141 (5%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK-PQ 205
I+ L + + Y+ IMN+IF+ QR +PID L A ++AFLQQAS T G++
Sbjct: 246 IISLSSTTHAAQHYIPIMNSIFACQRLHIPIDILKL-AGDAAFLQQASDATRGIYIPVTS 304
Query: 206 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKH 265
G QYL+ F D +R L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+
Sbjct: 305 HPAGFLQYLMLGFLPDQRARAHLVLPSRVDVDFRAACFCHRRVVDVGFVCSICLSIFCEP 364
Query: 266 L------KKCSTCGSVFGQAQ 280
L +C TCGS G +
Sbjct: 365 LGGVDGVAECLTCGSQLGVGE 385
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+ SL FS + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 21 SLLTVILDTNPHAWARLEPSLPFSAAIANLLVFINAHLACNYANKVAVVASHCHHATWLY 80
>gi|261201796|ref|XP_002628112.1| transcription factor TFIIH subunit Tfb4 [Ajellomyces dermatitidis
SLH14081]
gi|239590209|gb|EEQ72790.1| transcription factor TFIIH subunit Tfb4 [Ajellomyces dermatitidis
SLH14081]
Length = 425
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 8/141 (5%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK-PQ 205
I+ L + + Y+ IMN+IF+ QR +PID L A ++AFLQQAS T G++
Sbjct: 245 IISLSSTTHAAQHYIPIMNSIFACQRLHIPIDILKL-AGDAAFLQQASDATRGIYIPVTS 303
Query: 206 QLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKH 265
G QYL+ F D +R L LP V VDFRA+CFCH+ +D+G++CS+CLSI+C+
Sbjct: 304 HPAGFLQYLMLGFLPDQRARAHLVLPSRVDVDFRAACFCHRRVVDVGFVCSICLSIFCEP 363
Query: 266 L------KKCSTCGSVFGQAQ 280
L +C TCGS G +
Sbjct: 364 LGGVDGVAECLTCGSQLGVGE 384
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+ SL FS + ++L F+NA L N N+V V+A+ + ++Y
Sbjct: 21 SLLTVILDTNPHAWARLEPSLPFSAAIANLLVFINAHLACNYANKVAVVASHCHHATWLY 80
>gi|260939906|ref|XP_002614253.1| hypothetical protein CLUG_05739 [Clavispora lusitaniae ATCC 42720]
gi|238852147|gb|EEQ41611.1| hypothetical protein CLUG_05739 [Clavispora lusitaniae ATCC 42720]
Length = 332
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 145/312 (46%), Gaps = 27/312 (8%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
+D+ SL+ V+L+ P ++ S + ++ FLNA L+LN NQV + + + +
Sbjct: 18 ADNPSLLTVILELTPKSIAALDASLQDIVKALVVFLNAHLSLNNSNQVAFLVSSHVGARF 77
Query: 70 VYDSSS---TGNQSVGNGRMPSLCATLLQNLEEFMNKD-EQLGKQEPEGRIACSLLSGSL 125
++ S T + V G M + + + +NK+ E+L A S L+G+L
Sbjct: 78 LHPGVSDVETETRFVNPG-MYRQFRLVDEAVFGALNKELERLASAAKND--ARSTLAGAL 134
Query: 126 SMALCYIQRVF---RSG---------------LLHPQPRILCLQGSPDGPEQYVAIMNAI 167
SMA+ Y R+ +SG R+L + + Y+ IMNAI
Sbjct: 135 SMAMTYTNRMLHVDQSGSAVQVAAAGTAGAQTTAAMGARVLVVSANESDDNNYMGIMNAI 194
Query: 168 FSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF 227
F+AQ+ V ID LG +++ +L+QA+ T GV+ G+ Q L T F + R+
Sbjct: 195 FAAQKMKVAIDVAKLGRRSAPYLEQAADATQGVYLHVADPRGMVQTLATAFFVEPSLRSV 254
Query: 228 LQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--KHLKKCSTCGSVFGQAQTQSDE 285
+ LP VD++ASCF +D+GY+CSVCL I C C S F +
Sbjct: 255 VILPTHGNVDYKASCFLTGRAVDVGYVCSVCLCIMSMLPDSGACPMCHSQFDEHHIARLR 314
Query: 286 PSATNRKRKTTD 297
+ RKR+ +
Sbjct: 315 RGPSVRKRRKME 326
>gi|225684398|gb|EEH22682.1| RNA polymerase II transcription factor B subunit 4
[Paracoccidioides brasiliensis Pb03]
Length = 382
Score = 110 bits (276), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 142/322 (44%), Gaps = 85/322 (26%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP+ W+ S+L S + ++L F+NA L N N+V V+A+ N ++Y
Sbjct: 19 SLLTVILDTNPYAWALLESTLPLSAAIANLLVFINAHLACNYANKVAVVASHCNHAAWLY 78
Query: 72 DSSSTGNQS-------------VGNGRMPSL---------CATLLQNLEEFMNKDEQLGK 109
+ ST + S NG+ PS + F+ +EQL +
Sbjct: 79 PTPSTPSISQSKAIQLDADGDITMNGQ-PSTEPEPENQQQSQSPFNKYRPFLLVEEQLTR 137
Query: 110 Q-------EPEGRIACS---LLSGSLSMALCYIQR------------------------- 134
P + + +L+G+L++AL +I R
Sbjct: 138 NLHCLLSATPPSAVTSTTSTMLAGALTLALSHINRESIAYAEAHGAANPDPTSSTTGPAT 197
Query: 135 VFRSGLLHP---------------------QPRILC--LQGSPDGPEQYVAIMNAIFSAQ 171
SGL P Q RIL L + + Y+ IMN+IF+ Q
Sbjct: 198 STASGLPPPPNSTTADPTSAAANPLNPTALQSRILIISLSNNTHSAQHYIPIMNSIFACQ 257
Query: 172 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ-QLDGLFQYLLTIFGTDLHSRNFLQL 230
R +PID L A ++AFLQQAS TGG++ G QYL+ F D +R L L
Sbjct: 258 RLHIPIDIIKL-AGDAAFLQQASDATGGIYIPINAHPAGFLQYLMLGFLPDQRARAHLIL 316
Query: 231 PKPVGVDFRASCFCHKNTIDMG 252
P V VDFRA+CFCH+ +D+G
Sbjct: 317 PSRVDVDFRAACFCHRKVVDVG 338
>gi|453081361|gb|EMF09410.1| transcription factor Tfb4 [Mycosphaerella populorum SO2202]
Length = 287
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 6/134 (4%)
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHH--K 203
R+L L S D QY+ IMN+IF+ QR +PID L A ++ FLQQA+ TGG++
Sbjct: 114 RLLILSVSGDLANQYIPIMNSIFACQRLSIPIDILKL-AGDTVFLQQAADATGGIYMALD 172
Query: 204 PQQLDGLFQYLLTIFGTDLHSRNFLQLP-KPVGVDFRASCFCHKNTIDMGYICSVCLSIY 262
G QYL+ + D +R L P + GVDFRA+CFCH+ +D+G++CS+CLSI+
Sbjct: 173 SNTRGGFLQYLMFAYLPDETARKHLITPGEGEGVDFRAACFCHRRVVDIGFVCSICLSIF 232
Query: 263 CK--HLKKCSTCGS 274
C+ H C TCGS
Sbjct: 233 CEPLHDSLCLTCGS 246
>gi|443923251|gb|ELU42522.1| Tfb4 domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 872
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/297 (28%), Positives = 128/297 (43%), Gaps = 57/297 (19%)
Query: 16 VVVLLDTNPFFWSSSS---------LSFSQFLTHVLAFLNAILTLNQLNQVVVIAT--GY 64
++++LD +P W S+ + S FL+ VL F+N L Q N ++ G
Sbjct: 573 LILILDISPVQWQLSASSTANGGQGMDLSTFLSQVLVFVNCHLGCRQENSAAILGAFPGR 632
Query: 65 NSCDYVYDSSSTGNQSVG----------------------NGRMPSLCATLLQNL-EEFM 101
+ Y +S+ N +G + S+ + QNL + +
Sbjct: 633 SLTLYPAPASTQSNTGLGPESESNTYHGFRSVDDVLMERIQSELASMSESDTQNLIQAYR 692
Query: 102 NKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG--PEQ 159
N+ + R S++S + P P I+C+ D P
Sbjct: 693 NQQNIRAPTKTRKRKGGSIVSLHYRL---------------PHPDIVCVARCFDTIYPIH 737
Query: 160 YVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFG 219
+ ++ A +VPID C + ++ FLQQASY+T G + L Q L F
Sbjct: 738 ELHLLGA------KIVPIDVCRVFGPDTIFLQQASYLTRGCYLNLDSGSSLLQSLTMCFL 791
Query: 220 TDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
RN ++LP VDFRASCFCHK +DMGY+CSVCLSI+CK + C+TC F
Sbjct: 792 PSASLRNTIELPSQGKVDFRASCFCHKEVVDMGYVCSVCLSIFCKPVVVCATCKIKF 848
>gi|344229675|gb|EGV61560.1| transcription factor Tfb4 [Candida tenuis ATCC 10573]
Length = 381
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/336 (25%), Positives = 148/336 (44%), Gaps = 63/336 (18%)
Query: 6 SKLYSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
S + +DD SL+ ++L+ +P W + S + +L FLN L+LN NQV + +
Sbjct: 15 SDVSNDDPSLLTIVLEVSPEGWFNIKDQTSIMDVVKSLLVFLNGHLSLNNSNQVAFVLSS 74
Query: 64 YNSCDYVYDSSS----------TGNQSVGNGRMPSLCATLLQNL-EEFMNKDE------- 105
++Y +S T ++V N + + + + +F DE
Sbjct: 75 PAGSKFLYPDTSKTYEEIPLNVTSEETVENSNKSEELSFVTKGMYRQFRVVDETVLSGLS 134
Query: 106 ----QLGKQEPEGRIACSLLSGSLSMALCYIQRVFR------------------------ 137
+ + + S LSG+LS+AL Y R+ +
Sbjct: 135 QTMSDITHAQDDKVTGSSRLSGALSLALSYTNRMMKLDQSISTTTASAISSAANISNKES 194
Query: 138 -------------SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 184
G + RIL + + + +Y+++M AIF AQ+ V ID LG
Sbjct: 195 STAGASSGTNANSYGTSRMKSRILVVTPNDNEDIKYISLMKAIFGAQKMKVAIDIAKLGR 254
Query: 185 QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFC 244
++S++LQQA+ T GV+ ++ GL Q L T + + R + LP V+++ASCF
Sbjct: 255 KDSSYLQQAADATNGVYLHIEKPLGLIQVLCTAYFIEPSIRPLMILPTNSNVNYKASCFI 314
Query: 245 HKNTIDMGYICSVCLSIYCKHLKK--CSTCGSVFGQ 278
++++GY+CSVCL I + + C TC S F +
Sbjct: 315 TGKSVEIGYVCSVCLCIMSEIPDRMSCPTCNSHFDE 350
>gi|313239039|emb|CBY14022.1| unnamed protein product [Oikopleura dioica]
Length = 291
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 140/300 (46%), Gaps = 37/300 (12%)
Query: 14 SLVVVLLDTNPFFW----------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
SL+ V+LD NP W +S S SF + L L F+++ L + N+VVV+
Sbjct: 9 SLIAVVLDLNPLAWGFRAAQDAQRTSKSESFVKALDATLTFISSYLLMTHGNKVVVVGAH 68
Query: 64 -------YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRI 116
+ S Y +++S N+ + R+ LC +L L+E + + P R
Sbjct: 69 PLGAEILHPSDTYSGNTASMVNRQI-EARVNELCRGVL--LDETIAD----SRTSPASR- 120
Query: 117 ACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG-PEQYVAIMNAIFSAQRSMV 175
+ +LS ALC I R RS P R++ ++ D QY+ ++N ++A+ V
Sbjct: 121 ----FNNALSKALCCINR-MRSEKDLPA-RLMVMKCGGDFLSHQYLPLINCAYAAEHLKV 174
Query: 176 PIDSCYLGAQNSA-FLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPV 234
ID+ L A+ LQQ S +TGGV+ + + L Q LLT D +R L
Sbjct: 175 SIDTVVLEAETDVPVLQQMSDVTGGVYSRISEPAILLQTLLTYHLPDDDARKMLSKVPAT 234
Query: 235 GVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRK 294
VD RA CF + D+GY+CSVCLS+Y C TC SV P + RKR+
Sbjct: 235 PVDSRAVCFKTRAVTDIGYVCSVCLSVYKMLTPICVTCKSVLKLPGM----PPSRKRKRE 290
>gi|406602443|emb|CCH45984.1| RNA polymerase II transcription factor B subunit 4 [Wickerhamomyces
ciferrii]
Length = 361
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 131/294 (44%), Gaps = 53/294 (18%)
Query: 27 WSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY------------- 71
W S LS L ++ +NA L LN NQ+ +IA+ + ++Y
Sbjct: 21 WQSIEDKLSIKSMLESLVVAMNAHLALNNSNQIAIIASHTDGAKFLYPYNNQKESTSRPK 80
Query: 72 ---------------------DSSSTGNQSVG--NGRM----PSLCATLLQNLEEFMNKD 104
++S T N + N M + LL+NL N
Sbjct: 81 TRSDELQAEDQQGIESRSISPEASQTDNNTKHYINSSMYRQFKVVDEKLLENLYNLYN-- 138
Query: 105 EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIM 164
E + P+ LS SLS+ L YI ++ + L + +IL + S D +Y+ IM
Sbjct: 139 EPIPTTPPKNH-----LSSSLSLGLTYINKIQSNDSLM-KAKILIVNISQDEHLKYIPIM 192
Query: 165 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 224
N IF+AQ+ V ID C LG N+ FLQQAS T GV+ + +DGL QY T D
Sbjct: 193 NCIFAAQKMKVSIDVCQLGL-NATFLQQASDATNGVYLHIENMDGLIQYFTTALFIDPSI 251
Query: 225 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--YCKHLKKCSTCGSVF 276
+N L P +DFRASCF +D+G++CSVCL I KC C S F
Sbjct: 252 KNILTKPNKGDIDFRASCFLTGKIVDIGFVCSVCLCILSLIPEDNKCPACDSEF 305
>gi|159490694|ref|XP_001703308.1| TFIIH 34kDa subunit [Chlamydomonas reinhardtii]
gi|158280232|gb|EDP05990.1| TFIIH 34kDa subunit [Chlamydomonas reinhardtii]
Length = 169
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/102 (47%), Positives = 71/102 (69%)
Query: 170 AQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQ 229
AQR+ V +D+ + Q+S+F+QQA+++TGG++ +P + GL LL F D +R L
Sbjct: 39 AQRAQVVLDAVVVAPQDSSFMQQAAHLTGGLYFRPHRGRGLLGVLLNHFVCDTATRKQLD 98
Query: 230 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCST 271
+ +GVDFRASCFCHK I+ GY+CSVCLSI+C+ + C+T
Sbjct: 99 EAQALGVDFRASCFCHKYVIETGYVCSVCLSIFCQPSRSCTT 140
>gi|149236047|ref|XP_001523901.1| hypothetical protein LELG_04714 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452277|gb|EDK46533.1| hypothetical protein LELG_04714 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 444
Score = 100 bits (248), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 85/158 (53%), Gaps = 6/158 (3%)
Query: 146 RILCLQGSP-DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKP 204
RIL + S D Y+ +MN IF+AQ+ V ID LG +S++LQQAS T GV+ K
Sbjct: 259 RILIVTASDNDNHLNYIPLMNCIFTAQKLKVSIDVAKLGTTDSSYLQQASDATHGVYLKI 318
Query: 205 QQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSI--Y 262
+ G+ Q L T F + + R + +P VD++ASCF K +D+GY+CSVCL I +
Sbjct: 319 EDPRGMIQVLSTAFFIEPNLRPHVIMPTDYQVDYKASCFLTKKPVDLGYVCSVCLCIMSF 378
Query: 263 CKHLKKCSTCGSVFGQAQTQS---DEPSATNRKRKTTD 297
KC C S F Q Q D A +K++ D
Sbjct: 379 VPDDLKCPACSSEFDQGIVQELTRDPQVAVVKKKRKLD 416
Score = 40.4 bits (93), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 10 SDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC 67
+DD +L+ ++LD +P W + + S +L FLN L LN NQV IA+
Sbjct: 20 NDDPTLLTIVLDVSPLGWYNLRHTTSLENITKSLLVFLNGHLALNNSNQVAFIASSSTGS 79
Query: 68 DYVY 71
++Y
Sbjct: 80 KFLY 83
>gi|380484278|emb|CCF40099.1| RNA polymerase II transcription factor B subunit 4 [Colletotrichum
higginsianum]
Length = 157
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 3/113 (2%)
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
MNA+F+A S +PID+ L + ++ FLQQASYIT G + GL YL+ + D
Sbjct: 1 MNAVFAAAHSQIPIDTLAL-SGDATFLQQASYITDGTFMQAASPRGLLSYLMFAYAADAE 59
Query: 224 SRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTCGS 274
+R+ L P V FRA+CFCH +D G++CS+CLSI+C +C TCG+
Sbjct: 60 ARSSLIPPTHHTVXFRAACFCHGRVVDTGFVCSICLSIFCDVPEGSECLTCGT 112
>gi|357629722|gb|EHJ78327.1| putative transcription factor TFIIH-subunit [Danaus plexippus]
Length = 282
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/224 (33%), Positives = 112/224 (50%), Gaps = 18/224 (8%)
Query: 3 SAPSKLYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVI 60
APS D SL+V+++DTNP + + + L V+AF N+ L NQ+ VI
Sbjct: 5 EAPS-----DSSLLVIIVDTNPNQRYITEDPKVLTGCLDAVIAFANSHLMQKSRNQLAVI 59
Query: 61 ATGYNSCDYVYDSSSTG---NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIA 117
++ +Y+Y S Q G + +L ++ M + Q E R
Sbjct: 60 GCHFHKSEYLYPSPGKPLDVRQIDGQYELFTLVEKTIK-----MRLVNLIKSQPQEERPG 114
Query: 118 CSLLSGSLSMALCYIQRVFRSGL--LHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMV 175
SLL+G+++M LC+I R+ R L R+L + GS D QY+ MN F+AQ+ V
Sbjct: 115 ESLLAGAMAMGLCFIARMRREQPPGLRMVSRMLVVTGSSDTAAQYINYMNVFFTAQKQQV 174
Query: 176 PIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFG 219
+D C L ++ + LQQ ITGG++ K L+GL QYLL I+
Sbjct: 175 LLDVCSLD-KHLSLLQQGCDITGGLYLKVPSLEGLLQYLLVIYA 217
>gi|219113725|ref|XP_002186446.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583296|gb|ACI65916.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 358
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/137 (41%), Positives = 77/137 (56%), Gaps = 9/137 (6%)
Query: 145 PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ----NSAFLQQASYITGGV 200
PRI +Q S D Y A MN F+A + + +D C+L A+ +SAFL+QA +TGGV
Sbjct: 206 PRIFLIQASDDRSRDYNAFMNCAFAAVKQSIVVDGCFLSAKGNHSSSAFLEQACDLTGGV 265
Query: 201 HHKPQ---QLDG-LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICS 256
P Q+ G L + L ++F D+ SR L LP VDFRA CF +D+ Y+C+
Sbjct: 266 FLSPSGTAQVGGALTEVLHSVFLADVPSRCLLNLPAINKVDFRARCFETAELVDLAYVCN 325
Query: 257 VCLSIYCKHLKK-CSTC 272
CLSI+ K K C TC
Sbjct: 326 QCLSIFRKQPKNYCPTC 342
>gi|378726397|gb|EHY52856.1| transcription initiation factor TFIIH subunit H3 [Exophiala
dermatitidis NIH/UT8656]
Length = 455
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 104/392 (26%), Positives = 153/392 (39%), Gaps = 131/392 (33%)
Query: 14 SLVVVLLDTNPFFWSSSSLSFSQF--LTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ ++LDTNP WS S + S + ++L F+NA L N N+V VIA+ + ++Y
Sbjct: 20 SLLAIILDTNPAAWSLLSSTLSFSSAVANLLVFINAHLAANYTNKVAVIASHCDKATWLY 79
Query: 72 ------------------------DSSSTGNQSVGNG-RMPSLCATLLQNLEEFMNK--- 103
DS+ +V NG + + + EE NK
Sbjct: 80 PTPTEQEPPPPLSSSSHTNNNDLTDSTKRFKLNVNNGTKNNDSIPSSSSSAEETGNKYRP 139
Query: 104 ----DEQL--------GKQEPEG--RIACSLLSGSLSMALCYIQR---------VFRSGL 140
+E+L P+ R ++++G+L++AL YI R + SG
Sbjct: 140 FRLVEEELIHNLTTLLASTSPDAVSRSPTTMIAGALTLALSYINRESIAYAESVIGSSGA 199
Query: 141 LHP--------------------------QPRILCLQGSP--DGPEQYVAIMNAIFSAQR 172
Q RIL + SP D QY+ IMNAIF+ QR
Sbjct: 200 ADTTAAATTNTTTTTGDPNSSSSNNNTSLQSRILLVSVSPSTDLAHQYIPIMNAIFACQR 259
Query: 173 SMVPIDSCYL----------------------------------GAQNSAFLQQASYITG 198
+PID L + ++ FLQQA+ T
Sbjct: 260 LAIPIDILQLPLPLQTNNTTTQAQQTSTNNQTPAGDNNTTTAGNTSNSTVFLQQAADATH 319
Query: 199 GVHHKPQ-------------QLDGLFQYLLTIFGTDLHSRN-FLQLPKPVGVDFRASCFC 244
G+ Q YLLT +R L LP + VDFRA+CFC
Sbjct: 320 GIFIAAQLPKSQSQSQASAASSQAFLTYLLTSLLPSPSTRAAHLILPTRIDVDFRAACFC 379
Query: 245 HKNTIDMGYICSVCLSIYCK--HLKKCSTCGS 274
H+N + +G++CS+CLSI+C C TCG+
Sbjct: 380 HRNVVSVGFVCSICLSIFCSVPENADCLTCGT 411
>gi|37958350|gb|AAP41125.1| ZK1128.4 [Pristionchus pacificus]
Length = 278
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 125/260 (48%), Gaps = 31/260 (11%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYN-SCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEE 99
++ F N L+L Q NQ+++ A G S +YDS + N P + +++ +
Sbjct: 40 IVTFSNVHLSLAQSNQLLLYAYGNGMSKKLLYDSVRSDN--------PDSSSCIIKGIRG 91
Query: 100 FMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQP-------RILCLQG 152
+ ++ G C +L+ +L+ A+C I++ G + RI+ +
Sbjct: 92 ALRENSTSGDARK-----CGVLAATLATAICQIRKAATLGTNKSEETISGQKGRIVIISL 146
Query: 153 SPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQ 212
PD Q+ +MN FSA + + ID LG +SA LQQA+ IT GV +++ L +
Sbjct: 147 LPDFGSQHSLLMNLFFSAHKHDICIDVVSLGG-SSALLQQAADITAGVFQVIHKIEDLPR 205
Query: 213 YLLT--IFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCS 270
L+T + + S +F VD+RA+C CH+ + G+ CSVCL++ C + C
Sbjct: 206 ILMTRCLPVSIRDSTSF------TTVDYRAACVCHEKLVSNGWTCSVCLAVLCSFMAICP 259
Query: 271 TCGSVFGQAQTQSDEPSATN 290
+CG+ Q + S E T+
Sbjct: 260 SCGACV-QDHSSSKEEKETD 278
>gi|312385025|gb|EFR29618.1| hypothetical protein AND_01266 [Anopheles darlingi]
Length = 516
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 17/213 (7%)
Query: 12 DVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDY 69
D SL+V++LDTNP + +Q L ++AF NA L N++ V+A +++ ++
Sbjct: 284 DSSLLVIVLDTNPSQRIIREKPHNLTQCLDSIVAFGNAHLMQKAQNKLAVLACHHHATEF 343
Query: 70 VYDSSSTG---NQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIAC-SLLSGS 124
+Y + Q G + +L T+ Q L + K P + SLL+GS
Sbjct: 344 LYPTPGKPLDIRQVDGQYEVFTLVEKTIKQKLANLI-------KTAPHLTLPTESLLAGS 396
Query: 125 LSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL 182
+SMALCYI R+ R+ + R+L + GS + QY+ MN F+AQ+ V +D C L
Sbjct: 397 MSMALCYIARINRNKPPGSKINSRVLVVTGSNECASQYMTYMNVFFTAQKQGVVVDVCAL 456
Query: 183 GAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL 215
S LQQ ITGG + + +QLDG QYLL
Sbjct: 457 DKALS-LLQQGCDITGGQYLRLEQLDGFLQYLL 488
>gi|367054924|ref|XP_003657840.1| hypothetical protein THITE_2123949 [Thielavia terrestris NRRL 8126]
gi|347005106|gb|AEO71504.1| hypothetical protein THITE_2123949 [Thielavia terrestris NRRL 8126]
Length = 459
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/196 (30%), Positives = 85/196 (43%), Gaps = 61/196 (31%)
Query: 139 GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITG 198
GL RIL L S P QY+ MNA+F+A + + ID+ L ++ FL+QAS+IT
Sbjct: 207 GLAGMHARILILSVSDSSPAQYIPTMNAVFAAAHARIAIDTLSLRG-SATFLEQASFITR 265
Query: 199 GVHHKPQQLDGLFQYLLTIFGT----------------------------------DLHS 224
G + + GL QYL+ FG+ +
Sbjct: 266 GTFIRAAEPRGLLQYLMFGFGSGSAPSHPAAGGGGAGGTDAGKGPASKPKTSASTANGGG 325
Query: 225 RNFLQLPKPVG------------------------VDFRASCFCHKNTIDMGYICSVCLS 260
PKP G VDFRA+CFCH+N +D G++CS+CLS
Sbjct: 326 AAGRGRPKPGGASSSSRLGLGASVAELLVTPSADAVDFRAACFCHRNVVDTGFVCSICLS 385
Query: 261 IYCK--HLKKCSTCGS 274
I+C+ +C TCG+
Sbjct: 386 IFCEVPDGGECLTCGT 401
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 10 SDDV-SLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ + L S+ + ++L F+NA L + NQV +IA+ N
Sbjct: 18 TDDIPSLCTIIIDTNPRAWAALADVLPISKAIANILIFVNAHLAFSNSNQVALIASHTNR 77
Query: 67 CDYVY 71
++Y
Sbjct: 78 AVWLY 82
>gi|299751088|ref|XP_001830046.2| basic transcription factor 2.35KD subunit [Coprinopsis cinerea
okayama7#130]
gi|298409214|gb|EAU91711.2| basic transcription factor 2.35KD subunit [Coprinopsis cinerea
okayama7#130]
Length = 280
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 109/218 (50%), Gaps = 16/218 (7%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+D +L+ V+LD +P W ++ ++ + FL +LAFLNA + N + V
Sbjct: 2 NDHGTLLAVVLDLSPAQWHRAANDPQPITLNAFLAQLLAFLNAHIACMHENTLAVFGAFP 61
Query: 65 NSCDYVY---DSSSTGNQSVGNGRMPSLCATLLQN--LEEFMNKDEQLGKQEPEGRIACS 119
+Y D T + SV P LL N + + + L E + C+
Sbjct: 62 GKSVMLYASTDQHQTASISVDANSYPPF--KLLDNTVVTSIAAELDALDDSHDEEEVPCA 119
Query: 120 LLSGSLSMALCYIQRVFR-SGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVP 176
L+ G+L+ ALC + S + PQ PRIL L SPD Y+ IMNAIFSAQ+ V
Sbjct: 120 LV-GALTKALCSTTPLPNGSQGVPPQLDPRILILSVSPDLSTSYIPIMNAIFSAQKLKVT 178
Query: 177 IDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 214
ID+C + + FLQQA+++TGG + ++ D L QYL
Sbjct: 179 IDACQIYGGETVFLQQAAHLTGGSYLLLERRDALLQYL 216
>gi|195447228|ref|XP_002071121.1| GK25630 [Drosophila willistoni]
gi|194167206|gb|EDW82107.1| GK25630 [Drosophila willistoni]
Length = 310
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 85/174 (48%), Gaps = 10/174 (5%)
Query: 97 LEEFMNKDEQ-LGKQEPEGRIACSLLSGSLSMALCYIQRVFRS---GL-----LHPQPRI 147
+ E M D Q + + SLL+G + ALCYIQR R GL L + R+
Sbjct: 134 IAELMRSDAQKVNYNSNAQNTSTSLLAGGIGKALCYIQRRRREITRGLAKGVQLRIEARV 193
Query: 148 LCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQ 206
L + + G Q + M+ A+ S V +D C L A+ + +QA+ +TGG ++
Sbjct: 194 LIVTATDPGSNQVINYMHMFNGAKSSRVALDVCILDRAETLSIWRQATALTGGFYYSTND 253
Query: 207 LDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLS 260
L LL IF R P+ VD+R +C CHKN +D+G++CS CLS
Sbjct: 254 FTDLLTRLLGIFLMSPVERFQFNYPEQPQVDYRPNCVCHKNVLDIGFVCSACLS 307
>gi|298711517|emb|CBJ26605.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 223
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 106/218 (48%), Gaps = 33/218 (15%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSL-----------------SFSQFLTHVLAFLNAILTLNQ 53
++ SL++++LD + FW+ SF + L F+ + L +++
Sbjct: 8 EEPSLLLIILDASSAFWTKREAVRRRQKERPESGEVKLSSFQDTVEATLMFVESYLMMHR 67
Query: 54 LNQVVVIATGYNSCDYVYDSSSTGNQ--SVGNGRMPS------LCATLLQNLEEFMNKDE 105
N+V +A ++ + + + ++G G + + L L + +E DE
Sbjct: 68 RNEVCFVACTARESTIIFPTPAMEREQRTLGRGSVSTKEFQDCLWDGLGRVVERGHAADE 127
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMN 165
G E C+L +GSLS LCYI R R Q R L L GSPD PE Y ++MN
Sbjct: 128 AGGGDE-----GCAL-AGSLSKGLCYINRKMRESS-SIQARALVLSGSPDVPETYNSVMN 180
Query: 166 AIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK 203
AIFSAQ++ V +D LG ++S FLQQA+Y+TG K
Sbjct: 181 AIFSAQKAGVLVDCAVLG-ESSTFLQQAAYLTGKGARK 217
>gi|169607795|ref|XP_001797317.1| hypothetical protein SNOG_06960 [Phaeosphaeria nodorum SN15]
gi|160701493|gb|EAT85611.2| hypothetical protein SNOG_06960 [Phaeosphaeria nodorum SN15]
Length = 312
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 123/253 (48%), Gaps = 45/253 (17%)
Query: 14 SLVVVLLDTNPFFWS--SSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ V+LDTNP W+ SSS+S S L ++L F+NA L N+ G +
Sbjct: 20 SLLAVVLDTNPHAWAHLSSSISLSAALANILVFINAHLASGNANESRNGTNGDVEMNGAE 79
Query: 72 DSSSTGNQSVGNGRMPSLC-ATLLQNLEEFMNKDEQLGKQEPEGRIACS---LLSGSLSM 127
D+ ++ R +L + +L+N + + ++ E +A + L+ G++SM
Sbjct: 80 DNKPYIAENPNKYRAFALVESAILKNFAKLL-------EETNESHLAATPTTLIGGAISM 132
Query: 128 ALCYIQRVFRSGLLHP----------------------------QPRILCLQGSPDGPEQ 159
AL YI + S +LH RIL + S D Q
Sbjct: 133 ALSYINK---STILHAPTGASAEITSVAAMADTDNSTHLDRIALTSRILIVSVSGDLANQ 189
Query: 160 YVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFG 219
Y+ +MN+IF+AQR +PID L A ++ LQQAS TGGV+ KP++ +GL QYL+ +
Sbjct: 190 YIPVMNSIFAAQRKKIPIDILKL-AGDTVLLQQASDATGGVYMKPERPEGLLQYLMMAYL 248
Query: 220 TDLHSRNFLQLPK 232
D +R L +P+
Sbjct: 249 PDATARKSLIIPR 261
>gi|336468231|gb|EGO56394.1| hypothetical protein NEUTE1DRAFT_147077 [Neurospora tetrasperma
FGSC 2508]
gi|350289522|gb|EGZ70747.1| transcription factor Tfb4 [Neurospora tetrasperma FGSC 2509]
Length = 439
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 84/183 (45%), Gaps = 55/183 (30%)
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 205
RIL + S P QY+ MNA+F+A + + ID+ L ++ FLQQASYIT G + Q
Sbjct: 223 RILVVSVSDSSPSQYIPTMNAVFAAAHARIAIDTLALRG-SATFLQQASYITRGTFIRAQ 281
Query: 206 QLDGLFQYLLTIFGTDL---------HSR------------------------------- 225
+ GL QYL+ FG+ H R
Sbjct: 282 EPRGLLQYLMFGFGSGSAPQGLAAAGHQRSQQQHGGNKGKEDKASEKAVGAAAKGGAKHG 341
Query: 226 ------------NFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCST 271
+ L P VDFRA+CFCH+N ID G++CS+CLSI+C+ +C T
Sbjct: 342 GQKFLGSNASVADLLVTPSADSVDFRAACFCHRNVIDTGFVCSICLSIFCEVPEGGECLT 401
Query: 272 CGS 274
CG+
Sbjct: 402 CGT 404
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 10 SDDV-SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ L ++ L ++L F+N+ L N NQV +IA+ N
Sbjct: 18 TDDIPSLYTIIIDTNPRAWAALNDVLPLTKALANILIFVNSHLAFNNSNQVALIASHTNR 77
Query: 67 CDYVYDSSSTGNQSVGNGRMP 87
++Y ++ N GR P
Sbjct: 78 AVWLYPTAPDQNP----GRQP 94
>gi|116204609|ref|XP_001228115.1| hypothetical protein CHGG_10188 [Chaetomium globosum CBS 148.51]
gi|88176316|gb|EAQ83784.1| hypothetical protein CHGG_10188 [Chaetomium globosum CBS 148.51]
Length = 408
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 137/353 (38%), Gaps = 93/353 (26%)
Query: 10 SDDV-SLVVVLLDTNPFFWSSSS--LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ + L S+ + ++L F+NA L + NQV +IA N
Sbjct: 18 TDDIPSLCTIVIDTNPRAWAALTDVLPISKAIANILVFVNAHLAFSNSNQVSIIAAHTNR 77
Query: 67 CDYVYDSSSTGNQS-----------------VGNGRMPSLCATLLQNLEEFMNK--DEQL 107
++Y + +S + + +LL +L +N D L
Sbjct: 78 AVWLYPAPPRQGRSQDVDMQNAASDSKSSSANKYPQFAQIENSLLTSLRALINDTTDADL 137
Query: 108 GKQEPEGRIACSLLSGSLSMALCYIQRVFRS----------------------------- 138
+ +SG+L++AL +I + S
Sbjct: 138 ASTTTQ-------ISGALTLALAHINKTALSFTASSTAAHAATNTGTAMTAGTAVGPNPV 190
Query: 139 --------GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFL 190
GL RIL L S P QY+ MNA+F+A R+ + ID+ L A L
Sbjct: 191 SSTSMNGGGLAGLHARILILSVSDSAPAQYIPTMNAVFAAARARIAIDTLSLRAAEPRGL 250
Query: 191 QQASYITGGVHHKPQQLDG--------------LFQYLLTIFGTDLHSR----------- 225
Q G P G T H R
Sbjct: 251 LQYLMFGFGSGTAPSNPSGGADSGKGPASSKTATAGGQGTTAAGGRHPRTAKLGLGASVA 310
Query: 226 NFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCSTCGSVF 276
L P VDFRA+CFCH+N ID G++CSVCLSI+C+ +C TCG+
Sbjct: 311 ELLVTPSADAVDFRAACFCHRNVIDTGFVCSVCLSIFCEVPDGGECLTCGTAL 363
>gi|380477141|emb|CCF44315.1| RNA polymerase II transcription factor B subunit 4 [Colletotrichum
higginsianum]
Length = 255
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 106/230 (46%), Gaps = 50/230 (21%)
Query: 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY 71
SL+ +++DTNP W++ L S+ + +VL F+NA L + NQV + A+ N ++Y
Sbjct: 20 SLLSIVIDTNPRAWAALNDVLPLSKAIANVLVFVNAHLAFSNANQVAIFASHSNRAVWLY 79
Query: 72 ----------------DSSSTG--------NQSVGNGRMPSLCATLLQNLEEFMNKDEQL 107
D + TG NQS N + P Q M+ +L
Sbjct: 80 PAKPEPATANGAAASEDVAMTGVDAFAPTPNQSSAN-KFPQFA----QIESAVMSSMRKL 134
Query: 108 GKQEPEGRIACSL--LSGSLSMALCYIQ----------------RVFRSGLLHPQPRILC 149
E +AC+ LSG+L++AL +I R S L + RI
Sbjct: 135 VDATTEAXLACTTTQLSGALTLALAHINKTSLSLNETNKAPDVPRSTSSALSRLRARIFI 194
Query: 150 LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGG 199
L S P QY++ MNA+F+A S +PID+ L ++ FLQQASYIT G
Sbjct: 195 LSVSDSEPVQYISTMNAVFAAAHSQIPIDTLALSG-DATFLQQASYITDG 243
>gi|85078711|ref|XP_956217.1| hypothetical protein NCU01580 [Neurospora crassa OR74A]
gi|16416034|emb|CAB91384.2| related to basic transcription factor 2 (35 kd SU) [Neurospora
crassa]
gi|28917270|gb|EAA26981.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 439
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 83/183 (45%), Gaps = 55/183 (30%)
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 205
RIL + S P QY+ MNA+F+A + + ID+ L ++ FLQQASYIT G + Q
Sbjct: 223 RILVVSVSDSSPSQYIPTMNAVFAAAHARIAIDTLALRG-SATFLQQASYITRGTFIRAQ 281
Query: 206 QLDGLFQYLLTIF----------------------------------------------- 218
+ GL QYL+ F
Sbjct: 282 EPRGLLQYLMFGFGSGSAPQGLAAAGNQRSQQQHGGHKGKEDKASEKALGAAAKGGAKHG 341
Query: 219 -----GTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCK--HLKKCST 271
G++ + L P VDFRA+CFCH+N ID G++CS+CLSI+C+ +C T
Sbjct: 342 GQKFLGSNASVADLLVTPSADSVDFRAACFCHRNVIDTGFVCSICLSIFCEVPEGGECLT 401
Query: 272 CGS 274
CG+
Sbjct: 402 CGT 404
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 10 SDDV-SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ L ++ L ++L F+N+ L N NQV +IA+ N
Sbjct: 18 TDDIPSLYTIIIDTNPRAWAALNDVLPLTKALANILIFVNSHLAFNNSNQVALIASHTNR 77
Query: 67 CDYVYDSSSTGNQSVGNGRMP 87
++Y ++ N GR P
Sbjct: 78 AVWLYPTAPDQNP----GRHP 94
>gi|308501315|ref|XP_003112842.1| hypothetical protein CRE_25211 [Caenorhabditis remanei]
gi|308265143|gb|EFP09096.1| hypothetical protein CRE_25211 [Caenorhabditis remanei]
Length = 317
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/274 (27%), Positives = 117/274 (42%), Gaps = 38/274 (13%)
Query: 42 LAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFM 101
++F NA L + NQ++V A G N + SS+ + + + + LL N +
Sbjct: 56 VSFCNAHLGQSASNQLLVFAYGRNESKNMIYSSARSDDRNASFIVVNRLKDLLTN--DSG 113
Query: 102 NKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP------------------ 143
N D +G L +L+ A C++++ R P
Sbjct: 114 NSDATIGAP----------LGPALAHAFCHMKKDSRITTADPCDDSLGPAATSEQSESST 163
Query: 144 ---QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQASYITGG 199
R + + SP ++ ++MN FSA + + +D +G LQQA+ ITGG
Sbjct: 164 EKVTNRAVVISMSPIMGSEHGSLMNLFFSAAKQSICVDVVSMGDDFTGGILQQAADITGG 223
Query: 200 VHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCL 259
Q+ L + L+T TD R VD+RASC CH + G++CSVCL
Sbjct: 224 SFLHAQKPPALLKILMTNMLTDPSYRTAFSKLSHSSVDYRASCACHHKLVSSGWVCSVCL 283
Query: 260 SIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKR 293
S+ C++ C C + F T ++ P NRKR
Sbjct: 284 SVLCQYTPICKVCRAAF----TITNIPKKPNRKR 313
>gi|341877621|gb|EGT33556.1| hypothetical protein CAEBREN_10115 [Caenorhabditis brenneri]
Length = 311
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 124/278 (44%), Gaps = 41/278 (14%)
Query: 42 LAFLNAILTLNQLNQVVVIATGYN-SCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEF 100
++F NA L + NQ++V A G N +Y S+ + +++ + L L+ ++
Sbjct: 51 VSFCNAHLGQSSSNQLLVFAYGRNVEKKMIYSSARSEDRNASRIVVDRLRQLLI---DDS 107
Query: 101 MNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR----------------------S 138
N D +G + L +L+ A C++++ R +
Sbjct: 108 NNSDAIIG----------APLGPALAHAFCHMKKDSRVTTADPCDDSLGPASSNSEQSDA 157
Query: 139 GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQASYIT 197
P R + + + ++ ++MN FSA + ++ +D LG LQQA+ IT
Sbjct: 158 SAEKPTCRAVVISITQIMGSEHGSLMNLFFSAAKQLICVDVVSLGDDFTGGILQQAADIT 217
Query: 198 GGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSV 257
GG Q+ L + L+T TD R+ VD+RASC CH+ + G++CSV
Sbjct: 218 GGSFMHAQKPQALLKILMTNMLTDPTYRSAFSKLSHNSVDYRASCVCHQTLVSSGWVCSV 277
Query: 258 CLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKRKT 295
CLS+ C++ C C + F T + P NRKRK+
Sbjct: 278 CLSVLCQYTPICKVCKAAF----TIRNIPKKPNRKRKS 311
>gi|402595070|gb|EJW88996.1| hypothetical protein WUBG_00095 [Wuchereria bancrofti]
Length = 274
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 117/242 (48%), Gaps = 25/242 (10%)
Query: 41 VLAFLNAILTLNQLNQVVVIAT-GYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEE 99
+ ++ A ++L+ +N +VVI G S +Y +S++ + + + S+ L ++
Sbjct: 35 ITSYTTAHMSLSAMNGIVVIGVDGTLSEPTIYTTSASSDIDMSSAIKTSIQNALKKSASS 94
Query: 100 FMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQ 159
D +L + +++ A+C+I R F++ + RIL + D +
Sbjct: 95 TNTTDS-------------ALFAPAIATAICHIFR-FKNEVDKGDGRILVINIGSDLLGE 140
Query: 160 YVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL--TI 217
+ +MN F+A + + ID +G + S LQQAS ITGG + ++ L +Y + T+
Sbjct: 141 HNILMNIFFAAHKHSILIDVANIG-ETSPILQQASDITGGTYFNVKKPKQLLKYTMCFTL 199
Query: 218 FGTDLHSRNFLQLPKP---VGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGS 274
L S P P +D+RASC CH + +G++CSVCLS+ C C C +
Sbjct: 200 GRASLRS----AFPSPSSSTSIDYRASCHCHGAPVSVGWVCSVCLSVQCHFSPICPACNT 255
Query: 275 VF 276
VF
Sbjct: 256 VF 257
>gi|407044375|gb|EKE42557.1| hypothetical protein ENU1_017690 [Entamoeba nuttalli P19]
Length = 263
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 126/266 (47%), Gaps = 29/266 (10%)
Query: 18 VLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTG 77
+LLD F ++ L+ + +V + I L +++ I T VY S
Sbjct: 19 ILLDATFFVHNNRKLNVEEIREYVNIINSFIRVLKEIHDNSSIFT------IVYAGKSVF 72
Query: 78 NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR 137
+ G L ++ + ++E +N ++ EP LS ++S+AL I +
Sbjct: 73 VKESDRGE---LTTSIAEAIKEVLN--DKFLVNEPN-------LSSAMSLALTTINK--- 117
Query: 138 SGLLHP--QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS--AFLQQA 193
G L P Q +I+ + + +++ +MN +F+AQR ID+ L + F QQA
Sbjct: 118 DGKLQPDVQKKIIVVSTPFESSPKFIPLMNCVFAAQRIKTTIDTIVLSVIETRCTFCQQA 177
Query: 194 SYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLP--KPVGVDFRASCFCHKNTIDM 251
SY+T G+++ L LF LL+ +D + +++ + +D++ CF K +D
Sbjct: 178 SYLTNGIYNTAT-LQSLFPRLLSNNTSDCDTEKIIRVTGNQQPAIDWKLWCFHCKKPLDH 236
Query: 252 GYICSVCLSIYCKHLK-KCSTCGSVF 276
GY+CS C IYC+ K +C TCG+ F
Sbjct: 237 GYVCSSCFGIYCEKQKGRCPTCGAYF 262
>gi|167391336|ref|XP_001739730.1| RNA polymerase II transcription factor B subunit [Entamoeba dispar
SAW760]
gi|165896489|gb|EDR23894.1| RNA polymerase II transcription factor B subunit, putative
[Entamoeba dispar SAW760]
Length = 249
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 126/266 (47%), Gaps = 29/266 (10%)
Query: 18 VLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTG 77
+LLD F ++ L+ + +V + I L +++ + T VY S
Sbjct: 5 ILLDATFFVHNNRKLNVEEIREYVNIINSFIRVLKEIHDNSSVFT------IVYAGKSVF 58
Query: 78 NQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR 137
+ G L +++ ++E +N ++ EP LS ++S+AL I +
Sbjct: 59 VKESDRGE---LTTPIVEAIKEVLN--DKFLVNEPN-------LSSAMSLALTTINK--- 103
Query: 138 SGLLHP--QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSA--FLQQA 193
G L P Q +++ + + +++ +MN +F+AQR ID+ L + F QQA
Sbjct: 104 DGKLQPDIQKKVIVISTPFESSPKFIPLMNCVFAAQRIKTTIDTIVLSIIETGCTFCQQA 163
Query: 194 SYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLP--KPVGVDFRASCFCHKNTIDM 251
SY+T G+++ L LF LL+ +D + +++ + +D++ CF K +D
Sbjct: 164 SYLTNGIYNTAP-LQSLFPRLLSNNTSDCDTEKIIRVTGNQQSAIDWKLWCFHCKKPLDH 222
Query: 252 GYICSVCLSIYC-KHLKKCSTCGSVF 276
GY+CS C IYC K ++C TCG+ F
Sbjct: 223 GYVCSSCFGIYCEKQKERCPTCGAYF 248
>gi|124513782|ref|XP_001350247.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
gi|23615664|emb|CAD52656.1| conserved Plasmodium protein, unknown function [Plasmodium
falciparum 3D7]
Length = 326
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 74/306 (24%), Positives = 136/306 (44%), Gaps = 48/306 (15%)
Query: 16 VVVLLDTNPFFWSS-----------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+++++D N W +L +FL V F+ + ++ +I+T
Sbjct: 28 LILIIDVNLLIWCEGVQIKFENNVIRTLKLHEFLKSVFQFIRFYCIMCNSERICIISTCS 87
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
N+C +Y++ + + N C+ L +F+N++++ K E S LS +
Sbjct: 88 NNCKIIYENYISF--AKNNLTEKDFCSDTYDKLVDFINENKKEKKSE-------SALSSA 138
Query: 125 LSMALCYIQRVFRSGLLHPQPRILCLQGSPDG--PEQYVAIMNAIFSAQRSMVPIDSCYL 182
L++ALCY R+ R+ + R+ L S QY +MN ++A+R+ + ID L
Sbjct: 139 LTIALCYNNRI-RNLYENINTRLFLLDISKSHYYTNQYTQLMNIAYNAKRNNIIIDVFSL 197
Query: 183 GAQNSAFLQQASYITGGVHHKPQQL----------DGLFQYLLTIFGTDLHSRNFLQ--- 229
+ + L+Q IT G++ D L Q ++ F +++R +
Sbjct: 198 NYK-TQILEQICNITNGLYLDNTIFQSINPYGNIQDILTQTIIFWFLPSVNTRKYFSNTY 256
Query: 230 LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--KHLK------KCSTCGSVFGQAQT 281
L + + A C CH ID+ YICS CL+IYC K+L+ C+ C + F ++
Sbjct: 257 LNEDTNI---AVCTCHNKQIDIAYICSCCLAIYCSEKNLQTNKDRLSCAICKTRFTKSLL 313
Query: 282 QSDEPS 287
++ S
Sbjct: 314 RNKHVS 319
>gi|67468778|ref|XP_650390.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56467011|gb|EAL45004.1| hypothetical protein, conserved [Entamoeba histolytica HM-1:IMSS]
Length = 263
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 69/269 (25%), Positives = 129/269 (47%), Gaps = 35/269 (13%)
Query: 18 VLLDTNPFFWSSSSLS---FSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSS 74
+LLD F ++ L+ +++ + +F+ + ++ + + +I VY
Sbjct: 19 ILLDATFFVHNNRKLNVEEIREYVNIINSFIRVLKEIHDNSSIFII---------VYAGK 69
Query: 75 STGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQR 134
S + G L ++ + ++E +N ++ EP LS ++S+AL I +
Sbjct: 70 SVFVKESDRGE---LTISIAEAIKEVLN--DKFLVNEPN-------LSSAMSLALTTINK 117
Query: 135 VFRSGLLHP--QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNS--AFL 190
G L P Q +I+ + + +++ +MN +F+AQR ID+ L + F
Sbjct: 118 ---DGKLQPDIQKKIIIVSTPFESSPKFIPLMNCVFAAQRIKTTIDTIVLSVIETRCTFC 174
Query: 191 QQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLP--KPVGVDFRASCFCHKNT 248
QQASY+T G+++ L LF LL+ +D + +++ + +D++ CF K
Sbjct: 175 QQASYLTNGIYNTAT-LQSLFPRLLSNNTSDCDTEKIIRVTGNQQPAIDWKLWCFHCKKP 233
Query: 249 IDMGYICSVCLSIYCKHLK-KCSTCGSVF 276
+D GY+CS C IYC+ K +C TCG+ F
Sbjct: 234 LDHGYVCSSCFGIYCEKQKGRCPTCGAYF 262
>gi|123976711|ref|XP_001314576.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121897129|gb|EAY02259.1| hypothetical protein TVAG_030750 [Trichomonas vaginalis G3]
Length = 284
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 124/288 (43%), Gaps = 31/288 (10%)
Query: 14 SLVVVLLDTNPFFWSS-SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD 72
+ +L+D NP W + F F+ H+ +L ++ + + V+A + ++++
Sbjct: 7 EFLAILIDVNPLEWKEMKDIKFDGFMNHLFLYLKQMILSDCILPPCVLAYNQSHAEFIFP 66
Query: 73 SSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPE--GRIAC------SLLSGS 124
+ P+ N E+ N E + Q E GR A L +
Sbjct: 67 EPGRTKDVINQKFNPT-------NQEQIKNYFENIIIQIAEFNGRSASIPPTPHVRLDVA 119
Query: 125 LSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 184
LS +LC + + + + RIL SP+ QY N +F+A+R V ID +L +
Sbjct: 120 LSKSLCLMNNLPNKNI---KKRILAFSVSPETGSQYD---NLLFAAKRLDVVIDVLFLNS 173
Query: 185 QNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFC 244
FL QA+ +T G + L QYL ++ T + R+ + LP P +++ A
Sbjct: 174 NRLCFLSQAADLTHGFSKTIKMGAALAQYLFSLPPTTV--RDLMALPAPEPLEYSAPSAD 231
Query: 245 HKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFG-------QAQTQSDE 285
I GYIC VCLSI + + C C + +G Q + +S+E
Sbjct: 232 THKMISRGYICPVCLSILEEACRTCPICNTRYGSVNFYINQTEFKSEE 279
>gi|241605964|ref|XP_002405599.1| RNA polymerase II transcription initiation factor, putative [Ixodes
scapularis]
gi|215500649|gb|EEC10143.1| RNA polymerase II transcription initiation factor, putative [Ixodes
scapularis]
Length = 291
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 18/206 (8%)
Query: 8 LYSDDVSLVVVLLDTNP--FFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
L D+ SL+V ++DTNP S S+ L + F N+ L LN N++ +IA+ +
Sbjct: 1 LAEDEGSLLVAIIDTNPCASLLESDQGIVSKLLDALSVFCNSHLMLNPCNKLAIIASHSH 60
Query: 66 SCDYVY---DSSSTGNQSVGNGR---MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
++Y SS+ SV +G+ + + ++E + D+ E S
Sbjct: 61 KSTFIYPKPQESSSDTYSV-DGQYELFTEVTGAIKDGVKELVLSDDS------ESAAGES 113
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQ--PRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPI 177
LL+G LS+ALCYI R+ + + RIL L S + QY+ MN F+AQ+ V I
Sbjct: 114 LLTGGLSLALCYINRIEKESSSQNKIASRILVLSASGESASQYLNFMNVFFTAQKKNVII 173
Query: 178 DSCYLGAQNSAFLQQASYITGGVHHK 203
D+C L ++S LQQ ITGG + K
Sbjct: 174 DACVL-EKDSGLLQQGCDITGGKYMK 198
>gi|393909857|gb|EFO22116.2| basic transcription factor 2 [Loa loa]
Length = 274
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 88/163 (53%), Gaps = 11/163 (6%)
Query: 119 SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPID 178
++ + ++++A+C+I R +++ + + RIL + D ++ +MN F+A + + ID
Sbjct: 101 AVFAPAVAIAICHIFR-YKNEVDNGDGRILIINIGSDLRGEHSILMNIFFAAHKHNILID 159
Query: 179 SCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL--TIFGTDLHSRNFLQLPKP--- 233
+G + S LQQAS ITGG + ++ L +Y + T+ L S P P
Sbjct: 160 VANIG-EASTILQQASDITGGTYFSVKKPKQLLKYTMCFTLGKASLRS----AFPSPSSS 214
Query: 234 VGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
VD+RASC CH + +G++CSVCLS+ C C C +VF
Sbjct: 215 TSVDYRASCHCHGAPVSIGWVCSVCLSVQCHFNPICPACNTVF 257
>gi|392896378|ref|NP_499249.2| Protein ZK1128.4 [Caenorhabditis elegans]
gi|224490453|emb|CAA87423.2| Protein ZK1128.4 [Caenorhabditis elegans]
Length = 296
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 78/309 (25%), Positives = 135/309 (43%), Gaps = 45/309 (14%)
Query: 13 VSLVVVLLDTNPFFW-----SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN-S 66
+S + VL++T+ W + + L +++F NA L + NQ++V A G N
Sbjct: 1 MSTLSVLIETSSCSWGMLASAHGDRTIGIILRAIVSFCNAHLGQSANNQLLVFAYGRNVD 60
Query: 67 CDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+Y S+ +++ +++ L E ++ D L G + L +L+
Sbjct: 61 NKMIYSSTRCEDRNAS--------FLVVKRLRELLSSDA-LTNDATIG----APLGPALA 107
Query: 127 MALCYIQRVFR-------SGLLHPQP--------------RILCLQGSPDGPEQYVAIMN 165
A C++++ R L PQ R + + +P ++ ++MN
Sbjct: 108 HAFCHMKKDSRVVTADPCDDSLGPQTTSEQSETASEKATNRAVVISITPIMGSEHGSLMN 167
Query: 166 AIFSAQRSMVPIDSCYLGAQ-NSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 224
FSA + + +D +G LQQA+ ITGG ++ L + L+T TD
Sbjct: 168 LFFSAAKQSICVDVVSMGDDFTGGILQQAADITGGSFLHAKKPQTLLKILMTNMLTDPTH 227
Query: 225 RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSD 284
R VD+RASC CH + G++CS+CLS+ C++ C C + F T ++
Sbjct: 228 RAVFSKLSHNSVDYRASCACHHQLVSSGWVCSICLSVLCQYTPICKVCKAAF----TIAN 283
Query: 285 EPSATNRKR 293
P NRKR
Sbjct: 284 LPIKPNRKR 292
>gi|170591206|ref|XP_001900361.1| basic transcription factor 2, 35 kD subunit [Brugia malayi]
gi|158591973|gb|EDP30575.1| basic transcription factor 2, 35 kD subunit, putative [Brugia
malayi]
Length = 274
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 116/242 (47%), Gaps = 25/242 (10%)
Query: 41 VLAFLNAILTLNQLNQVVVIAT-GYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEE 99
+ ++ A ++L+ +N +VVI G S +Y +S++ + M S T +QN +
Sbjct: 35 ITSYTTAHMSLSAMNGIVVIGVDGTLSEPTIYTTSASSDID-----MSSAVKTSIQNALK 89
Query: 100 FMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQ 159
+L + +++ A+C+I R F++ + RIL + D +
Sbjct: 90 KSASSTSTTDS--------ALFAPAIATAICHIFR-FKNEVDKGDGRILIINIGSDLFGE 140
Query: 160 YVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL--TI 217
+ +MN F+A + + ID +G + S LQQAS ITGG + ++ L +Y + T+
Sbjct: 141 HNILMNIFFAAHKHNILIDVANIG-ETSPILQQASDITGGTYFNVKKPKQLLKYTMCFTL 199
Query: 218 FGTDLHSRNFLQLPKP---VGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGS 274
L S P P +D+RASC CH + +G++CSVCLS+ C C C +
Sbjct: 200 GRASLRS----AFPSPSSSTSIDYRASCHCHGAPVSVGWVCSVCLSVQCHFSPICPACNT 255
Query: 275 VF 276
VF
Sbjct: 256 VF 257
>gi|351713028|gb|EHB15947.1| General transcription factor IIH subunit 3 [Heterocephalus glaber]
Length = 89
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 49/70 (70%)
Query: 207 LDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHL 266
+ L QYLL +F +D R L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C
Sbjct: 1 MASLLQYLLWVFLSDQDQRAQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFS 60
Query: 267 KKCSTCGSVF 276
C+TC + F
Sbjct: 61 PICTTCETAF 70
>gi|268573188|ref|XP_002641571.1| Hypothetical protein CBG09872 [Caenorhabditis briggsae]
Length = 299
Score = 84.0 bits (206), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 128/284 (45%), Gaps = 47/284 (16%)
Query: 37 FLTHVLAFLNAILTLNQLNQVVVIATGYN-SCDYVYDSSSTGNQSVGNGRMPSLCATLLQ 95
L +++F NA L + NQ++V A G N +Y S+ + +++V + + L LLQ
Sbjct: 32 ILRAIVSFCNAHLGQSASNQLLVFAFGRNVEKKLIYSSARSEDRNVSSVVVDHL-RDLLQ 90
Query: 96 NLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR------------------ 137
+ + N D +G P G +L+ A C++++ +
Sbjct: 91 S--DSGNSDATMG--APIG--------PALAHAFCHMKKDSQLATADICDDSLGPAASNT 138
Query: 138 ----SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ-NSAFLQQ 192
S R + + +P ++ ++MN FSA + + +D + LQQ
Sbjct: 139 EKSDSSTEKVSTRAVVISMTPIIGSEHGSLMNLFFSAAKQSICVDVVSMSDDLTGGILQQ 198
Query: 193 ASYITGG--VH-HKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTI 249
A+ ITGG VH KPQ L + L+T TD RN VD+RASC CH +
Sbjct: 199 AADITGGSFVHAEKPQ---ALLKILMTNMLTDASYRNTFSKLSYCSVDYRASCACHHTLV 255
Query: 250 DMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSATNRKR 293
G++CS+CLS+ C++ C C + F T ++ P +RKR
Sbjct: 256 SSGWVCSICLSVLCQYTPICKVCKAAF----TITNLPKKPSRKR 295
>gi|224006638|ref|XP_002292279.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220971921|gb|EED90254.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 409
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 94/189 (49%), Gaps = 16/189 (8%)
Query: 100 FMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQ 159
N L +++ EG IA L+ GS S + LL PR L +Q S D
Sbjct: 208 LANSSSMLQRKDDEGVIA--LMGGSGSSNFKQQELQHSKSLL--SPRALIIQSSSDRTSD 263
Query: 160 YVAIMNAIFSAQRSMVPIDSCYL------GAQNSAFLQQASYITGGVH----HKPQQLDG 209
Y A+MN F+A + + ID C++ A++S +L+Q T GV+ Q+ G
Sbjct: 264 YNALMNCAFAANKQNIVIDGCFIPSGMKDDAKSSPYLEQIVDQTRGVYLSVPSGAAQVGG 323
Query: 210 -LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK 268
L + L+++F R + LPK VDFRA CF +ID+ IC+ CLSI+ + K+
Sbjct: 324 ALSEVLISVFLPPPLLRKEMNLPKLTKVDFRARCFETGESIDVAQICNQCLSIFKERPKE 383
Query: 269 -CSTCGSVF 276
C TCG+V
Sbjct: 384 FCLTCGAVV 392
>gi|156373212|ref|XP_001629427.1| predicted protein [Nematostella vectensis]
gi|156216427|gb|EDO37364.1| predicted protein [Nematostella vectensis]
Length = 190
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 101/210 (48%), Gaps = 35/210 (16%)
Query: 14 SLVVVLLDTNPFFW-------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
SL+VV+ D NP W + + +S ++ L ++ N+ L L N + +A N
Sbjct: 8 SLLVVIFDANPVAWGGIAVEGNETQISLTRCLESLMVLCNSYLLLKHNNLLAFVAASTNG 67
Query: 67 CDYVYDSSS-TGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSL 125
++Y +S G QS +PS + + EF D L + + A S + L
Sbjct: 68 SKFLYPKASCEGIQS-----LPSQDSKY-EKFSEF--NDTVLREIKKLVGAAQSTVGAKL 119
Query: 126 SMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ 185
QPRIL ++ SPD Y+ +MN+IF+AQ+S ID+C L +
Sbjct: 120 ------------------QPRILIIKASPDDASHYMPVMNSIFAAQKSNTCIDACVL-YE 160
Query: 186 NSAFLQQASYITGGVHHKPQQLDGLFQYLL 215
+S +LQQA+ ITGGV+ K + L QYL+
Sbjct: 161 HSGYLQQATDITGGVYLKIPETQALLQYLM 190
>gi|324508596|gb|ADY43627.1| General transcription factor IIH subunit 3 [Ascaris suum]
Length = 272
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/247 (28%), Positives = 109/247 (44%), Gaps = 22/247 (8%)
Query: 34 FSQFLTHVLAFLNAILTLNQLNQVVVI---ATGYNSCDYVYDSSSTGNQSVGNGRMPSLC 90
F L+ + +F +A L+L+ N V ++ AT N Y +D ++ P++
Sbjct: 28 FYSLLSAIASFASAHLSLSANNSVSILGVDATLNNPLLYAFD------LTIQIDMTPTIV 81
Query: 91 ATL-LQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILC 149
L + L+ N D + Q + + + A C+I R F+ RIL
Sbjct: 82 ERLRMALLKSAGNSDAKCTSQ----------FAPAFATAFCHINR-FKKENDGADGRILI 130
Query: 150 LQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDG 209
+ D + A+MN FSA + + +D +G + S LQQA IT G + ++
Sbjct: 131 INIGSDLAREQNALMNVFFSAHKQGIVVDVANIG-EPSPVLQQACDITMGAYINVEKPKR 189
Query: 210 LFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKC 269
L QYL+ SR+ VD+RASC CH + +CSVCLS+ CK C
Sbjct: 190 LLQYLMFFALGGPDSRSKFTSSVASSVDYRASCHCHGTPASIALVCSVCLSVQCKFNPIC 249
Query: 270 STCGSVF 276
C +VF
Sbjct: 250 PICNTVF 256
>gi|397617770|gb|EJK64598.1| hypothetical protein THAOC_14658 [Thalassiosira oceanica]
Length = 263
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 12/155 (7%)
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL------GAQNSAFLQQASYITGG 199
R L +Q SPD Y A+MN F++ +S V +D C++ ++ S L+Q +TGG
Sbjct: 107 RALVVQASPDRTSDYNALMNCAFASSKSSVVVDGCFIPSGLRDDSRTSPVLRQVVDLTGG 166
Query: 200 VH----HKPQQLDGLFQYLLTI-FGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYI 254
V+ Q+ G +LT F R + LP+ VDFRA CF +D+ ++
Sbjct: 167 VYLAVPSGAAQVGGALGEVLTAAFLPPPRLRGLMNLPESDDVDFRARCFATGRAVDVAWV 226
Query: 255 CSVCLSIYCKHLK-KCSTCGSVFGQAQTQSDEPSA 288
C+ CLSI+ + + C TCG+ + + D A
Sbjct: 227 CNQCLSIFAERPEGACPTCGAKVLVGEGRGDSKRA 261
>gi|406695514|gb|EKC98819.1| hypothetical protein A1Q2_06922 [Trichosporon asahii var. asahii
CBS 8904]
Length = 297
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 76/157 (48%), Gaps = 31/157 (19%)
Query: 146 RILCLQGSPDGPEQYVA--------------------IMNAIFSAQRSMVPIDSCYLGAQ 185
RIL L +P G E A +MN +F+ Q++ V ID L +
Sbjct: 87 RILILNATPGGAEDAEATDSKTAKASGGGGGQRGYVGLMNCVFAGQKAKVAIDVLTLPPE 146
Query: 186 NSA-----FLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF-LQLPKPVGVDFR 239
++ FLQQA+Y+T G++ + GL QYL +++ RN +P VDFR
Sbjct: 147 STMTAPPIFLQQAAYLTEGIYWRWNGRGGLLQYLHSMYLPPPSLRNKPFTVPPQDAVDFR 206
Query: 240 ASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
A CFCH + +D+G++C I+C+ CS C + F
Sbjct: 207 AVCFCHHDVVDVGFVC-----IFCEVKPICSMCKTKF 238
>gi|82541502|ref|XP_724989.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23479826|gb|EAA16554.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 327
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 131/314 (41%), Gaps = 48/314 (15%)
Query: 13 VSLVVVLLDTNPFFWSS-----------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
+S +++++D N WS ++ SQFL V F ++ ++ +IA
Sbjct: 22 MSHLILVIDVNFLIWSQGLKIKFDKNNIKTVKLSQFLKSVFQFTRFYCFMSSSERICIIA 81
Query: 62 TGYNSCDYVYDS--SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
T + +Y++ S T N N C L F+ KD + E + S
Sbjct: 82 TCSGNSKIIYENYISYTKNNLTEND----YCTNAYDKLINFI-KDNNNNTKTYE--MVES 134
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG--PEQYVAIMNAIFSAQRSMVPI 177
LS +L++ALCY R+ + + RI L S QY +MN ++A+R+ + I
Sbjct: 135 TLSSALAIALCYNNRIC-NLYENINSRIFLLDISKSHFYTNQYTQLMNIAYNAKRNKIII 193
Query: 178 DSCYLGAQNSAFLQQASYITGGVHHKPQQL----------DGLFQYLLTIFGTDLHSRNF 227
D L + + L+Q IT G++ D L Q ++ F HSR +
Sbjct: 194 DVFSLNHK-TQILEQICNITNGLYIDNSIFLSINCGDNVEDILTQTIMFWFLPSTHSRKY 252
Query: 228 LQ---LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--------KHLKKCSTCGSVF 276
L + + A C CH ID+ YICS CL+IYC K CS C + F
Sbjct: 253 FSNTYLNEDTNI---AVCTCHNKQIDIAYICSCCLAIYCSEKDSQTNKERISCSVCKTRF 309
Query: 277 GQAQTQSDEPSATN 290
+A ++ S N
Sbjct: 310 TKALLRNKTVSDLN 323
>gi|68063783|ref|XP_673887.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56492063|emb|CAI02316.1| conserved hypothetical protein [Plasmodium berghei]
Length = 327
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 132/314 (42%), Gaps = 48/314 (15%)
Query: 13 VSLVVVLLDTNPFFWSS-----------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
+S +++++D N WS ++ SQFL V F ++ ++ +IA
Sbjct: 22 MSHLILVIDVNFLIWSQGLKIKFDKNNIKTVKLSQFLKSVFQFARFYCFMSSSERICIIA 81
Query: 62 TGYNSCDYVYDS--SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
T + +Y++ S T N N C + L F+ KD + E + S
Sbjct: 82 TCSGNSKIIYENYISYTKNNLTEND----YCTNAYEKLINFI-KDNNNNSKTYE--MVES 134
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG--PEQYVAIMNAIFSAQRSMVPI 177
LS +L++ALCY R+ + + RI L S QY +MN ++A+R+ + I
Sbjct: 135 TLSSALAIALCYNNRIC-NLYENINSRIFLLDISKSHFYTNQYTQLMNIAYNAKRNNIII 193
Query: 178 DSCYLGAQNSAFLQQASYITGGVHHKPQQL----------DGLFQYLLTIFGTDLHSRNF 227
D L + + L+Q IT G++ D L Q ++ F HSR +
Sbjct: 194 DVFSLNHK-TQILEQICNITNGLYIDNSIFLSINCADNVEDILTQTIMFWFLPSTHSRKY 252
Query: 228 LQ---LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--------KHLKKCSTCGSVF 276
L + + A C CH ID+ YICS CL+IYC K CS C + F
Sbjct: 253 FSNTYLNEDTNI---AVCTCHNKQIDIAYICSCCLAIYCSEKDAQTNKERISCSVCKTRF 309
Query: 277 GQAQTQSDEPSATN 290
++ ++ S N
Sbjct: 310 TKSLLRNKTVSDLN 323
>gi|392576127|gb|EIW69258.1| hypothetical protein TREMEDRAFT_62112 [Tremella mesenterica DSM
1558]
Length = 297
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/248 (27%), Positives = 109/248 (43%), Gaps = 50/248 (20%)
Query: 14 SLVVVLLDTNPFFWS-----------------------SSSLSFSQFLTHVLAFLNAILT 50
SL+++++D +P WS SSL+ +F+T +L FLNA L
Sbjct: 3 SLLILIVDLHPLSWSLLSIPPSPQPSDPTLSPIIAKSLPSSLTLEEFITQLLVFLNAHLA 62
Query: 51 LNQLNQVVVIATGYNSCDYVYDSSST----GNQSVGNGRMP--SLCATLLQNLEEFMNKD 104
N+VVV ++ + ST N GN P L + L Q L M+++
Sbjct: 63 SQWGNRVVVYGVSAGKSRLLFPAPSTTRDDTNTPSGNVYEPFRLLDSGLEQGLRGMMSEE 122
Query: 105 EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQ--- 159
G +E +G L +++ ALCY+ R+ S L R+L + +P
Sbjct: 123 ---GAREGKGLNEPPALVAAMTKALCYLNRLSPSTATLQTTDTRMLIINATPGSSFSESD 179
Query: 160 --------YVAIMNAIFSAQRSMVPID-----SCYLGAQNSAFLQQASYITGGVHHKPQQ 206
YV +MN +F+AQ+ +PID Y FLQQA+++TGG++ +
Sbjct: 180 SSGGLRGGYVGLMNCVFAAQKGKIPIDVLTLPPSYTQTSPPIFLQQAAHLTGGMYWRWNG 239
Query: 207 LDGLFQYL 214
G+ QYL
Sbjct: 240 RGGVLQYL 247
>gi|70953884|ref|XP_746016.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56526511|emb|CAH87927.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 327
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 82/314 (26%), Positives = 132/314 (42%), Gaps = 48/314 (15%)
Query: 13 VSLVVVLLDTNPFFWSS-----------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIA 61
+S +++++D N WS ++ SQFL V F ++ ++ +IA
Sbjct: 22 MSHLILVIDVNFLIWSQGLKIKFDKNNIKTVKLSQFLKSVFQFTRFYCFMSSSERICIIA 81
Query: 62 TGYNSCDYVYDS--SSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACS 119
T + +Y++ S T N N C L +F+ KD + E + S
Sbjct: 82 TCSGNSKIIYENYISYTKNNLTEND----YCTNAYDKLIKFI-KDNNNNSKTYE--MVES 134
Query: 120 LLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG--PEQYVAIMNAIFSAQRSMVPI 177
LS +L++ALCY R+ + + RI L S QY +MN ++A+R+ + I
Sbjct: 135 TLSSALAIALCYNNRIC-NLYENINSRIFLLDISKSHFYTNQYTQLMNIAYNAKRNNIII 193
Query: 178 DSCYLGAQNSAFLQQASYITGGVHHKPQQL----------DGLFQYLLTIFGTDLHSRNF 227
D L + + L+Q IT G++ D L Q ++ F +SR +
Sbjct: 194 DVFSLNHK-TQILEQICNITNGLYIDNSIFLSITCGDNVEDILTQTIMFWFLPSTNSRKY 252
Query: 228 LQ---LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--------KHLKKCSTCGSVF 276
L + + A C CH ID+ YICS CL+IYC K CS C + F
Sbjct: 253 FSNTYLNEDTNI---AVCTCHNKQIDIAYICSCCLAIYCSEKDAQTNKERISCSICKTRF 309
Query: 277 GQAQTQSDEPSATN 290
+A ++ S N
Sbjct: 310 TKALLRNKTVSDLN 323
>gi|401400847|ref|XP_003880871.1| hypothetical protein NCLIV_039130 [Neospora caninum Liverpool]
gi|325115283|emb|CBZ50838.1| hypothetical protein NCLIV_039130 [Neospora caninum Liverpool]
Length = 580
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 85/193 (44%), Gaps = 28/193 (14%)
Query: 114 GRIAC---SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG--PEQYVAIMNAIF 168
GR C S+L+G+LS+ALCY+ +V + P+ R+L L GS D QY+ +MN F
Sbjct: 372 GRSLCGEDSMLAGALSLALCYLNKVAKRSARPPERRVLLLDGSLDRSYSSQYMPLMNLAF 431
Query: 169 SAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHK-----PQQLDG----------LFQY 213
+A + + ID C L S +Q I+ GVH K P G L
Sbjct: 432 AAAKGNIVIDCCALCPNPSTISEQLCDISRGVHLKFSQAAPASTSGNSHLDGGLALLQLL 491
Query: 214 LLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--------KH 265
L IF + L G A CFCH +++ ICS CL+IYC K
Sbjct: 492 LFWIFPSVSLRPAIAALSVHRGRSNAAVCFCHHRPVEVCCICSCCLAIYCSEKDAQTGKE 551
Query: 266 LKKCSTCGSVFGQ 278
C C S F +
Sbjct: 552 RISCDVCKSRFSR 564
>gi|225707288|gb|ACO09490.1| TFIIH basal transcription factor complex p34 subunit [Osmerus
mordax]
Length = 208
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 91/194 (46%), Gaps = 25/194 (12%)
Query: 23 NPFFWSSSS-----LSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVY------ 71
NP +W + + S+ L V+ N+ L + + N++ +IA+ ++Y
Sbjct: 17 NPLWWGQQAQKDPEFTLSKCLDAVMVMGNSHLVMTRTNKLAIIASHCQESHFLYPSKHWK 76
Query: 72 --DSSSTGNQSVGNGRMPSLCAT---LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLS 126
+ S + G+G+ L + ++ M++ E G Q +LL+GSL+
Sbjct: 77 IGEGSGDVQSASGDGKYELLSVANDLIADEIKNLMSRTEVKGHQTD------TLLAGSLA 130
Query: 127 MALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGA 184
ALCYI RV + + RIL + + D QY+ MN IF+AQR + ID+C L +
Sbjct: 131 KALCYIHRVTKELEAGQELKSRILVFKAAEDCARQYMNFMNVIFAAQRQNILIDACVLDS 190
Query: 185 QNSAFLQQASYITG 198
+ S LQQ I G
Sbjct: 191 E-SGLLQQLISICG 203
>gi|207340364|gb|EDZ68737.1| YPR056Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 230
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 24/217 (11%)
Query: 2 ASAPSKLYSDDVSLVVVLLDTNPFFWSS------SSLSFSQFLTHVLAFLNAILTLNQLN 55
A + ++ + SL+ V+++ P W++ S + L ++ FLNA L N N
Sbjct: 12 ARSRKQVTEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSAN 71
Query: 56 QVVVIATGYNSCDYVY-DSSSTGNQSVGNGRMPSLCATLLQNL-EEFMNKDE-------- 105
+V VIA Y+Y +S+S S + S + ++ F N DE
Sbjct: 72 KVAVIAAYSQGIKYLYPESTSALKASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYK 131
Query: 106 --QLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHP-QPRILCLQ----GSPDGPE 158
+L K++ E S L+G++S L Y+ R+ + + + R+L L S D
Sbjct: 132 LFELEKKQIEQNSQRSTLAGAMSAGLTYVNRISKESVTTSLKSRLLVLTCGSGSSKDEIF 191
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYL-GAQNSAFLQQAS 194
QY+ IMN IFSA + PID + G++ S FLQQ +
Sbjct: 192 QYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTT 228
>gi|399218636|emb|CCF75523.1| unnamed protein product [Babesia microti strain RI]
Length = 278
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 122/284 (42%), Gaps = 49/284 (17%)
Query: 16 VVVLLDTNPFFWSS-----SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYV 70
+V+++D N WS+ + L+F QF++ + F+ A ++ + +IAT C +
Sbjct: 8 LVLVIDANKRSWSNDGVSDNKLTFIQFVSSLKRFIRAYHCMSSGRTLYIIATNTIYCKII 67
Query: 71 YDSSSTGN-----QSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSL 125
+ + + M S ++ ++L +F+++D L P+ ++ +L
Sbjct: 68 FHGLTDSTLIPTTTNSNTTSMDSTLDSMEESLLKFISED--LPDANPQPTLSSNL----- 120
Query: 126 SMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQ 185
R+ L + +L + +Q++ ++N FSA
Sbjct: 121 -------NRIGHKENLSREILLLDYSTNDMYLKQHIPLLNIGFSAL-------------- 159
Query: 186 NSAFLQQASYITGGVHHKPQQLDG---------LFQYLLTIFGTDLHSRNFLQLPKPVGV 236
N L+Q S IT G + + G LFQ LL F S+N L P +
Sbjct: 160 NMKLLEQLSDITKGTFLRLMDMYGNDSINIEYALFQTLLFWFLASNDSKNILSPPSLTQI 219
Query: 237 DFRASCFCHKNTIDMGYICSVCLSIYC--KHLKKCSTCGSVFGQ 278
A C+CH NTI++GY+CS CL++YC K L C C S F +
Sbjct: 220 SNSAVCYCHNNTIEIGYLCSSCLTVYCTDKSLIMCKICSSRFAK 263
>gi|156101255|ref|XP_001616321.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148805195|gb|EDL46594.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 323
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 125/301 (41%), Gaps = 53/301 (17%)
Query: 16 VVVLLDTNPFFW-----------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+++++D N W + +L +FL F+ ++ ++ +IAT
Sbjct: 24 LILVVDVNFMIWCEGLKIKFDKNNVKTLRLPEFLKSTFHFVRFYCLMSNAERICIIATSL 83
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFM--NKDEQLGKQEPEGRIACSLLS 122
SC +Y++ + + N C L EF+ NK E++ + S LS
Sbjct: 84 RSCKILYENYVS--YAKNNLTERDYCEEAYNKLIEFLSENKTEKMME---------SSLS 132
Query: 123 GSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG---PEQYVAIMNAIFSAQRSMVPIDS 179
+L++ALCY R+ + + + RI L S + QY +MN ++A+R+ + ID
Sbjct: 133 SALAVALCYNHRIV-NMYENMKGRIFLLDISNETYVYTNQYTQLMNIAYNAKRNNIIIDV 191
Query: 180 CYLGAQNSAFLQQASYITGGVHHKPQQL----------DGLFQYLLTIFGTDLHSRNFLQ 229
L + L+Q IT G++ D L Q ++ F ++R +
Sbjct: 192 FSLNCK-IQLLEQICNITNGLYIDSSIFFNVNCTDNIEDVLTQTMIFWFLPSNNTRKYFS 250
Query: 230 ---LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--------KHLKKCSTCGSVFGQ 278
L + A C CH +D+ YICS CL+IYC K C C + F +
Sbjct: 251 NTYLNDDTNI---AVCSCHNKQVDIAYICSCCLAIYCSEKDEKTNKERTSCFVCKTRFTK 307
Query: 279 A 279
A
Sbjct: 308 A 308
>gi|149579196|ref|XP_001517604.1| PREDICTED: general transcription factor IIH subunit 3-like, partial
[Ornithorhynchus anatinus]
Length = 80
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 217 IFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+F D R+ L LP P+ VD+RA+CFCH+N I++GY+CSVCLSI+C C+TC + F
Sbjct: 2 VFLPDQDQRSQLILPPPIHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAF 61
>gi|298711518|emb|CBJ26606.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 117
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 196 ITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYIC 255
+ GG++ + Q + GL QY+ F R +L+L VDFRA+CFCHK +D+ Y+C
Sbjct: 15 LPGGLYLEHQGV-GLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVC 73
Query: 256 SVCLSIYCKHLKKCSTCGS 274
SVCLS++C+ C+TCG+
Sbjct: 74 SVCLSVFCEFSPVCTTCGT 92
>gi|221502054|gb|EEE27800.1| conserved hypothetical protein [Toxoplasma gondii VEG]
Length = 404
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 84/196 (42%), Gaps = 29/196 (14%)
Query: 112 PEGRIAC---SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGP--EQYVAIMNA 166
P AC S+L+G+LS+ALC + +V + P+ R+L L GS D QY+ +MN
Sbjct: 193 PRPTTACGEDSMLAGALSLALCCLNKVSKRSARTPERRVLILDGSLDRSYSSQYMPLMNL 252
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQ----------------LDGL 210
F+A + + ID C L S +Q I+ GVH K Q L L
Sbjct: 253 AFAAAKGNIVIDCCALSTNPSTIPEQLCDISRGVHLKFAQAAPSASTSGSASLDGGLALL 312
Query: 211 FQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC------- 263
L IF + L G A CFCH +++ ICS CL+IYC
Sbjct: 313 QLLLFWIFPSMSLRPAIAALSVHRGRSNTAVCFCHHKPVEVCCICSCCLAIYCSEKDAQT 372
Query: 264 -KHLKKCSTCGSVFGQ 278
K C C S F +
Sbjct: 373 GKERISCDVCKSRFSR 388
>gi|221057700|ref|XP_002261358.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
gi|194247363|emb|CAQ40763.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
Length = 323
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 123/299 (41%), Gaps = 49/299 (16%)
Query: 16 VVVLLDTNPFFW-----------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+++++D N W + +L +FL F+ ++ ++ +IAT
Sbjct: 24 LILVVDVNFMIWCEGLKIKFDKNNVKTLGLPEFLKSTFHFVRFYCLMSSAERICIIATSL 83
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
SC +Y++ + + N C L EF+N+++ E S LS +
Sbjct: 84 RSCRILYENYVS--YAKNNLTERDYCEEAYNKLIEFINENKTEKMME-------SNLSSA 134
Query: 125 LSMALCYIQRVFRSGLLHPQPRILCLQGSPDG---PEQYVAIMNAIFSAQRSMVPIDSCY 181
L++ALCY R+ + + + RI L S QY +MN ++A+R+ + ID
Sbjct: 135 LAVALCYNHRIV-NMYENMKGRIFLLDISNQSYVYTNQYTQLMNIAYNAKRNNIIIDVFS 193
Query: 182 LGAQNSAFLQQASYITGGVHHKPQQL----------DGLFQYLLTIFGTDLHSRNFLQ-- 229
L + L+Q IT G++ D L Q ++ F ++R +
Sbjct: 194 LNYK-IQLLEQICNITNGLYIDTTIFFNVNCTDNIEDVLTQTMIFWFLPSNNTRKYFSNT 252
Query: 230 -LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--------KHLKKCSTCGSVFGQA 279
L + A C CH +D+ YICS CL+IYC K C C + F +A
Sbjct: 253 YLNDDTNI---AVCSCHNKQVDIAYICSCCLAIYCSEKDDKTNKDRISCFVCKTRFTKA 308
>gi|389584514|dbj|GAB67246.1| hypothetical protein PCYB_112670, partial [Plasmodium cynomolgi
strain B]
Length = 323
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 72/299 (24%), Positives = 122/299 (40%), Gaps = 49/299 (16%)
Query: 16 VVVLLDTNPFFW-----------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64
+++++D N W + +L +FL F+ ++ ++ +IAT
Sbjct: 24 LILVVDVNFMIWYEGVKIKFDKNNVKTLRLPEFLKSTFHFVRFYCLMSNSERICIIATSL 83
Query: 65 NSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGS 124
SC +Y++ + + N C L EF+N+++ E S LS +
Sbjct: 84 RSCKILYENYVS--YAKNNLTERDYCEEAYNKLIEFINENKTEKMME-------SSLSSA 134
Query: 125 LSMALCYIQRVFRSGLLHPQPRILCLQGSPD---GPEQYVAIMNAIFSAQRSMVPIDSCY 181
L++ALCY R+ + + + RI L S QY +MN ++A+R+ + ID
Sbjct: 135 LAVALCYNHRIV-NMYENMKGRIFLLDISNQIYVYTNQYTQLMNIAYNAKRNDIIIDVFS 193
Query: 182 LGAQNSAFLQQASYITGGVHHKPQQL----------DGLFQYLLTIFGTDLHSRNFLQ-- 229
L + L+Q IT G++ D L Q ++ F +R +
Sbjct: 194 LNYK-IKLLEQICNITNGLYIDSSIFFNVNCTDNIEDVLTQTMIFWFLPSNSTRKYFSNT 252
Query: 230 -LPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC--------KHLKKCSTCGSVFGQA 279
L + A C CH +D+ YICS CL+IYC K C C + F +A
Sbjct: 253 YLNDDTNI---AVCSCHNKQVDIAYICSCCLAIYCSEKDDKTNKDRTSCFVCKTRFTKA 308
>gi|237838949|ref|XP_002368772.1| hypothetical protein TGME49_066930 [Toxoplasma gondii ME49]
gi|211966436|gb|EEB01632.1| hypothetical protein TGME49_066930 [Toxoplasma gondii ME49]
Length = 547
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 83/196 (42%), Gaps = 29/196 (14%)
Query: 112 PEGRIAC---SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGP--EQYVAIMNA 166
P AC S+L+G+LS+ALC + +V + P+ R+L L GS D QY+ +MN
Sbjct: 336 PRPTTACGEDSMLAGALSLALCCLNKVSKRSARTPERRVLILDGSLDRSYSSQYMPLMNL 395
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQL----------------DGL 210
F+A + + ID C L S +Q I+ GVH K Q L
Sbjct: 396 AFAAAKGNIVIDCCALSTNPSTIPEQLCDISRGVHLKFAQAAPSASTSGSASLDGGLALL 455
Query: 211 FQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC------- 263
L IF + L G A CFCH +++ ICS CL+IYC
Sbjct: 456 QLLLFWIFPSMSLRPAIAALSVHRGRSNTAVCFCHHKPVEVCCICSCCLAIYCSEKDAQT 515
Query: 264 -KHLKKCSTCGSVFGQ 278
K C C S F +
Sbjct: 516 GKERISCDVCKSRFSR 531
>gi|403292309|ref|XP_003937192.1| PREDICTED: tectonic-2 [Saimiri boliviensis boliviensis]
Length = 940
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 96/188 (51%), Gaps = 26/188 (13%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCMDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSSTGNQSVGN-----GRMPSLCA---------TLLQNLEEFMNKD--EQLG 108
++Y N +G+ G PS LL + E + ++ + +
Sbjct: 65 QESRFLYPGK---NGRLGDFFGDPGNPPSEFNPSGSKDGKYELLTSANEVIAEEIKDLMT 121
Query: 109 KQEPEGRIACSLLSGSLSMALCYIQRVFRS--GLLHPQPRILCLQGSPDGPEQYVAIMNA 166
K + +G+ +LL+GSL+ ALCYI R+ + + RIL ++ + D QY+ MN
Sbjct: 122 KSDIKGQHTETLLAGSLAKALCYIHRMNKEIKDNQEMKSRILVIKAAEDSALQYMNFMNV 181
Query: 167 IFSAQRSM 174
IF+AQ+ +
Sbjct: 182 IFAAQKQL 189
>gi|221481332|gb|EEE19726.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 549
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 83/196 (42%), Gaps = 29/196 (14%)
Query: 112 PEGRIAC---SLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGP--EQYVAIMNA 166
P AC S+L+G+LS+ALC + +V + P+ R+L L GS D QY+ +MN
Sbjct: 338 PRPTTACGEDSMLAGALSLALCCLNKVSKRSARTPERRVLILDGSLDRSYSSQYMPLMNL 397
Query: 167 IFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQL----------------DGL 210
F+A + + ID C L S +Q I+ GVH K Q L
Sbjct: 398 AFAAAKGNIVIDCCALSTNPSTIPEQLCDISRGVHLKFAQAAPSASTSGSASLDGGLALL 457
Query: 211 FQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC------- 263
L IF + L G A CFCH +++ ICS CL+IYC
Sbjct: 458 QLLLFWIFPSMSLRPAIAALSVHRGRSNTAVCFCHHKPVEVCCICSCCLAIYCSEKDAQT 517
Query: 264 -KHLKKCSTCGSVFGQ 278
K C C S F +
Sbjct: 518 GKERISCDVCKSRFSR 533
>gi|224146905|ref|XP_002336364.1| predicted protein [Populus trichocarpa]
gi|222834814|gb|EEE73263.1| predicted protein [Populus trichocarpa]
Length = 80
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 42/66 (63%)
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
MNA FSA RS+VPIDSC +GA N AF QQASYITG V+ KPQQ+ + F ++
Sbjct: 1 MNATFSAPRSLVPIDSCRVGAHNPAFSQQASYITGSVYVKPQQVSLVNHRPFIFFAPEVA 60
Query: 224 SRNFLQ 229
N L
Sbjct: 61 VENLLH 66
>gi|224116574|ref|XP_002331930.1| predicted protein [Populus trichocarpa]
gi|222874602|gb|EEF11733.1| predicted protein [Populus trichocarpa]
Length = 79
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 42/66 (63%)
Query: 164 MNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLH 223
MNA FSA RS+VPIDSC +GA N AF QQASYITG V+ KPQQ+ + F ++
Sbjct: 1 MNATFSAPRSLVPIDSCRVGAHNPAFSQQASYITGSVYVKPQQVSLVNHRPFIFFAPEVA 60
Query: 224 SRNFLQ 229
N L
Sbjct: 61 VENLLH 66
>gi|294889292|ref|XP_002772747.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239877280|gb|EER04563.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 383
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 124/319 (38%), Gaps = 58/319 (18%)
Query: 15 LVVVLLDTNPFFWSSSSLS----------------FSQFLTHVLAFLNAILTLNQLNQVV 58
LV ++LD NP+ WSS SL+ + +T F +LT+ ++
Sbjct: 28 LVAIVLDLNPWVWSSYSLASFKVEAPPSEKAMQEKAAGAVTLEALFSALLLTVGAISAAS 87
Query: 59 VIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT-LLQNLEEFMNKDEQLGKQEPEGRIA 117
C + S T + + G P + T L + + F+ + + +
Sbjct: 88 TSGDSLGVC--IVGVSPTKAKILLKGSWPEMDRTALWEAMVGFIKASVKERSRPSTTTTS 145
Query: 118 CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCL------QGSPDGPEQYVAIMNAIFSAQ 171
SL++ LS+ALCY+ + L P C+ G + + V + N ++AQ
Sbjct: 146 SSLIAAGLSLALCYLNK----HLTIPGRARCCIVEAVSVYGEANYASEAVPLANCGWAAQ 201
Query: 172 RSMVPIDSCYLGAQNS-----------------------AFLQQASYITGGVHHKPQQ-- 206
VPID C + + L Q T GVH ++
Sbjct: 202 DLRVPIDLCTVCPGRTPQSSSPSNDRSSSSSSNASPTSATLLVQLCEATRGVHIPSKRCS 261
Query: 207 -LDGLFQYLLTIFGT-DLHSRNFLQL-PKPVGVDFRASCFCHKNTIDMGYICSVCLSIYC 263
+ GLFQ L+ F L R L+ P +D + C CH +D GY+CSVCL IYC
Sbjct: 262 TVGGLFQSLMFHFSVPSLGEREVLKTRPSARLLDMGSLCACHGLPVDRGYVCSVCLCIYC 321
Query: 264 KHLKK-CSTCGSVFGQAQT 281
C CG+ F + T
Sbjct: 322 NDSSGVCRKCGARFKRTAT 340
>gi|401888190|gb|EJT52153.1| hypothetical protein A1Q1_06259 [Trichosporon asahii var. asahii
CBS 2479]
Length = 323
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 111/300 (37%), Gaps = 103/300 (34%)
Query: 30 SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSL 89
S ++ F T ++ FLNA L N+VVV Y + + R P +
Sbjct: 15 SPITLEDFATVLMVFLNAHLASRWGNEVVV-----------YGALPGSAIDINRRRPPEV 63
Query: 90 CATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILC 149
AT L + ++ PE + RIL
Sbjct: 64 AATSL-----VAHDNDPSKNSNPEAE----------------------------ESRILI 90
Query: 150 LQGSPDGPEQYVA--------------------IMNAIFSAQRSM-------------VP 176
L +P G E A +MN +F+AQ+++ V
Sbjct: 91 LNATPGGAEDAEATDSKTAKASGGGGGQRGYVGLMNCVFAAQKAVSLTAVEDELTCQKVA 150
Query: 177 IDSCYLGAQNSA-----FLQQASYITGGVHHKPQQLDGLFQYL---------------LT 216
ID L +++ FLQQA+Y+T G++ + GL QYL +
Sbjct: 151 IDVLTLPPESTMTAPPIFLQQAAYLTEGIYWRWNGRGGLLQYLHVSLLVPSVSADPQSMY 210
Query: 217 IFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
+ L ++ F +P VDFRA CFCH + +D+G++C I+C+ CS C + F
Sbjct: 211 LPPPSLRNKPF-TVPPQDAVDFRAVCFCHHDVVDVGFVC-----IFCEVKPICSMCKTKF 264
>gi|294947738|ref|XP_002785469.1| hypothetical protein Pmar_PMAR005787 [Perkinsus marinus ATCC 50983]
gi|239899380|gb|EER17265.1| hypothetical protein Pmar_PMAR005787 [Perkinsus marinus ATCC 50983]
Length = 385
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 128/327 (39%), Gaps = 72/327 (22%)
Query: 15 LVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAI-------LTLNQLNQVVVIATGYNSC 67
LV ++LD NP+ WSS SL+ F A+ +TL L +++ G S
Sbjct: 28 LVAIVLDLNPWVWSSYSLA--SFKVEAPPSEKAMQEKAAGAVTLEALFSALLLTVGAIS- 84
Query: 68 DYVYDSSSTGNQSVGN---GRMPSLCATLLQNLEEFMNK---------------DEQLGK 109
++ST S+G G P+ LL+ M++ E+
Sbjct: 85 -----AASTSGDSLGVCIVGVSPTKAKILLKGSWPEMDRTALWEAMVGFIKASVKERSRP 139
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCL------QGSPDGPEQYVAI 163
+ SL++ LS+ALCY+ + L P C+ G + + V +
Sbjct: 140 SSTMTTTSSSLIAAGLSLALCYLNK----HLTIPGRARCCIVEAVSVYGEANYASEAVPL 195
Query: 164 MNAIFSAQRSMVPIDSCYL-----------------------GAQNSAFLQQASYITGGV 200
N ++AQ VPID C + ++ L Q T GV
Sbjct: 196 ANCGWAAQDLRVPIDLCTVCPGRTPQSSSPSNDRSSSSSSNASPTSATLLVQLCEATRGV 255
Query: 201 HHKPQQ---LDGLFQYLLTIFGT-DLHSRNFLQL-PKPVGVDFRASCFCHKNTIDMGYIC 255
H ++ + GLFQ L+ F L R L+ P +D + C CH +D GY+C
Sbjct: 256 HIPSKRCSTVGGLFQSLMFHFSVPSLGEREVLKTRPSARLLDMGSLCACHGLPVDRGYVC 315
Query: 256 SVCLSIYCKHLKK-CSTCGSVFGQAQT 281
SVCL IYC C CG+ F + T
Sbjct: 316 SVCLCIYCNDSSGVCRKCGARFKRTAT 342
>gi|413935398|gb|AFW69949.1| hypothetical protein ZEAMMB73_462205 [Zea mays]
Length = 73
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/41 (70%), Positives = 36/41 (87%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHV 41
MASA SKLYSDD+SLVVV+LDTNPFFW++++L F+ F HV
Sbjct: 1 MASAHSKLYSDDISLVVVVLDTNPFFWAAATLPFADFFAHV 41
>gi|19074510|ref|NP_586016.1| hypothetical protein ECU07_0880 [Encephalitozoon cuniculi GB-M1]
gi|19069152|emb|CAD25620.1| hypothetical protein [Encephalitozoon cuniculi GB-M1]
gi|449329589|gb|AGE95860.1| hypothetical protein ECU07_0880 [Encephalitozoon cuniculi]
Length = 213
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 25/163 (15%)
Query: 123 GSLSMALCYIQRVFRSGLLH--PQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSC 180
G L ALC LH + +I+ + ++Y+ + +F+AQR + + +
Sbjct: 74 GDLGYALC----------LHRDEESQIVIFTLGRERKDEYLRYLKCMFAAQRFGIRVSAF 123
Query: 181 YLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRA 240
L +N LQ + TGG + + DG ++LL++ GT PKP+G F A
Sbjct: 124 SL-FENKTILQCCAS-TGGDYSTSE--DGCLRFLLSLLGTRGE-------PKPLG--FPA 170
Query: 241 SCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQS 283
+C+CH + +G +C +CLS++C+ + C C S F + +S
Sbjct: 171 TCYCHNRQVLLGLVCPICLSVFCRFVPVCKKCKSKFSFTKYES 213
>gi|303389949|ref|XP_003073206.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB4 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302351|gb|ADM11846.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB4 [Encephalitozoon
intestinalis ATCC 50506]
Length = 213
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 21/161 (13%)
Query: 123 GSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL 182
G L ALC + R G + +I+ + ++Y+ + +F+AQR V I + L
Sbjct: 74 GDLGYALC----LHRLG----ESQIVIFTLEKERNDEYLRYLKCMFAAQRFGVRISAFSL 125
Query: 183 GAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASC 242
+N LQ + TGG + + DG ++LL++ GT S KP+G F A+C
Sbjct: 126 -FENKTILQCCA-ATGGGYSTSE--DGCLRFLLSLLGTKGDS-------KPLG--FPATC 172
Query: 243 FCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQS 283
+CH + +G +C +CLS++C+ + C C S F + +S
Sbjct: 173 YCHNKQVLLGLVCPICLSVFCRFVPVCKKCKSKFSFVKHES 213
>gi|76163131|gb|AAX30917.2| SJCHGC08726 protein [Schistosoma japonicum]
Length = 77
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 214 LLTIFGTDLHSRNFLQLPKP------VGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLK 267
LL++F R L LP GVDFRA+CFCHK ID+GY+CS+CLS++C+
Sbjct: 1 LLSVFLPSSKMRTSLILPDSRSSGLSFGVDFRAACFCHKRLIDIGYVCSICLSVFCEFNP 60
Query: 268 KCSTCGSVFGQAQTQS 283
C TC + F Q+
Sbjct: 61 ICPTCNTPFVLPTVQN 76
>gi|32399081|emb|CAD98321.1| transcription factor, possible [Cryptosporidium parvum]
Length = 311
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 126/308 (40%), Gaps = 46/308 (14%)
Query: 18 VLLDTNPFFW-----SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD 72
++LD+ F S S + S L LN+I Q ++ ++TG +Y
Sbjct: 7 IILDSRSLFRYEDTGESQSNAQSNLLVSGECVLNSIF---QFTRLYNLSTGQKKKLNIYL 63
Query: 73 SSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYI 132
S G + +G + L L E E++ ++ G + +S ++S LC I
Sbjct: 64 CDSKGENLLFDGFISGLTKEL--QFEIMPKMLEEISERISLGEMK---MSPTISKCLCKI 118
Query: 133 QRVFRSGLLH--PQPRILCLQGSPDGP--EQYVAIMNAIFSAQRSMVPIDSCYLGAQNSA 188
+ + + RI+ L S QYV+++N F++Q+ V ID + S
Sbjct: 119 NSTRKKFGYNRSEKDRIILLDASNKDEYISQYVSLLNCGFASQKLDVVIDVVSVTRNPSP 178
Query: 189 FLQQASYITGGVHHKPQQL-DGLFQYLLTIFGTDLHSRN--------FLQLP-------- 231
L I G++ K Q+ D L + + I D H + F LP
Sbjct: 179 LLNNLVDICNGLNLKYSQIVDSLAESNIEINKEDHHWLDQGLTPFLIFHLLPSIQAREEI 238
Query: 232 -------KPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCGSVFGQAQTQ 282
K G+ A CFCH I++GY+CS CLSI+C K CSTCG+ + Q
Sbjct: 239 FISINKTKQTGL---AVCFCHHQKIEIGYVCSSCLSIFCSRFKAPICSTCGARLKRIPIQ 295
Query: 283 SDEPSATN 290
S+ N
Sbjct: 296 QKTLSSLN 303
>gi|396081719|gb|AFN83334.1| RNA polymerase II transcription [Encephalitozoon romaleae SJ-2008]
Length = 213
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 23/162 (14%)
Query: 123 GSLSMALCYIQRVFRSGLLHPQP-RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCY 181
G L ALC L +P +I+ + ++Y+ + +F+AQR V I +
Sbjct: 74 GDLGYALC---------LHKDEPTQIVIFTLGRERKDEYLRYLKCMFAAQRLGVRISAFS 124
Query: 182 LGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRAS 241
L +N LQ TGG + + D ++LL++ GT KP+G F A+
Sbjct: 125 L-FENKTILQ-CCVSTGGDYSTSE--DRCLRFLLSLLGTGGSQ-------KPLG--FPAT 171
Query: 242 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQS 283
C+CH I +G +C +CLS++CK + C C S F A+ +S
Sbjct: 172 CYCHNRQILLGLVCPICLSVFCKFIPVCKKCKSKFSFAKYES 213
>gi|209882598|ref|XP_002142735.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209558341|gb|EEA08386.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 310
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 23/193 (11%)
Query: 121 LSGSLSMALCYIQ--RVFRSGLLHPQPRILCLQGSPDGP--EQYVAIMNAIFSAQRSMVP 176
L+ +S+ LC I R S + RIL S + QYV ++N+ ++A + V
Sbjct: 110 LASGISICLCKINSDRKLHSKNRTNKDRILLFDASNEKSYINQYVLLINSSYAALKLDVI 169
Query: 177 IDSCYLGAQNSAFLQQASYITGGVH---------------HKPQQLDGLFQYLL--TIFG 219
ID C + + S L I+ G++ K DGL +++ +
Sbjct: 170 IDVCSISSNPSRLLYNVVDISKGIYINYSSIIKNVSSKIDDKSHIQDGLLPFIIFHLLPS 229
Query: 220 TDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCGSVFG 277
+L + + + L + CFCH +++G+ICS CL+I+C + C+ CG+ F
Sbjct: 230 AELRANSLINLSTKSRHSGISVCFCHYKKVEVGFICSSCLAIFCSLFRAPICAACGARFK 289
Query: 278 QAQTQSDEPSATN 290
+ Q S N
Sbjct: 290 RVPIQQKPLSYLN 302
>gi|126650916|ref|XP_001388356.1| transcription factor [Cryptosporidium parvum Iowa II]
gi|126117450|gb|EAZ51550.1| transcription factor, putative [Cryptosporidium parvum Iowa II]
Length = 286
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 120/291 (41%), Gaps = 46/291 (15%)
Query: 18 VLLDTNPFFW-----SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYD 72
++LD+ F S S + S L LN+I Q ++ ++TG +Y
Sbjct: 7 IILDSRSLFRYEDTGESQSNAQSNLLVSGECVLNSIF---QFTRLYNLSTGQKKKLNIYL 63
Query: 73 SSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYI 132
S G + +G + L L E E++ ++ G + +S ++S LC I
Sbjct: 64 CDSKGENLLFDGFISGLTKEL--QFEIMPKMLEEISERISLGEMK---MSPTISKCLCKI 118
Query: 133 QRVFRSGLLH--PQPRILCLQGSPDGP--EQYVAIMNAIFSAQRSMVPIDSCYLGAQNSA 188
+ + + RI+ L S QYV+++N F++Q+ V ID + S
Sbjct: 119 NSTRKKFGYNRSEKDRIILLDASNKDEYISQYVSLLNCGFASQKLDVVIDVVSVTRNPSP 178
Query: 189 FLQQASYITGGVHHKPQQL-DGLFQYLLTIFGTDLHSRN--------FLQLP-------- 231
L I G++ K Q+ D L + + I D H + F LP
Sbjct: 179 LLNNLVDICNGLNLKYSQIVDSLAESNIEINKEDHHWLDQGLTPFLIFHLLPSIQAREEI 238
Query: 232 -------KPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK--CSTCG 273
K G+ A CFCH I++GY+CS CLSI+C K CSTCG
Sbjct: 239 FISINKTKQTGL---AVCFCHHQKIEIGYVCSSCLSIFCSRFKAPICSTCG 286
>gi|401827001|ref|XP_003887593.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB4 [Encephalitozoon hellem
ATCC 50504]
gi|392998599|gb|AFM98612.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB4 [Encephalitozoon hellem
ATCC 50504]
Length = 213
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 13/129 (10%)
Query: 155 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 214
+ ++Y+ + +F+AQR V I + L +N LQ + TGG + + D ++L
Sbjct: 98 EKKDEYLRYLKCMFAAQRLGVRISAFSL-FENKTILQCCAS-TGGDYSTSE--DKCLRFL 153
Query: 215 LTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGS 274
L++ GT + KP+G F A+C+CH + +G +C +CLS++CK + C C S
Sbjct: 154 LSLLGTGGNK-------KPLG--FPAACYCHNRQVILGLVCPICLSVFCKFIPVCRKCKS 204
Query: 275 VFGQAQTQS 283
F + ++
Sbjct: 205 KFSFVKYEN 213
>gi|71029634|ref|XP_764460.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351414|gb|EAN32177.1| hypothetical protein, conserved [Theileria parva]
Length = 348
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 125/313 (39%), Gaps = 67/313 (21%)
Query: 16 VVVLLDTNPFFWSS----------SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYN 65
+V++LD +P WSS + F T + FL ++ N+ ++I +
Sbjct: 29 LVLILDLSPGRWSSGVPLRPEEPEKRIHLHNFFTVLANFLKLFGYMSVRNKTLIITANNH 88
Query: 66 SCDYVY---------DSSSTGNQSVGNG-----------RMPSLCATLLQNLEEFMNKDE 105
S +Y DS N SV ++ + + +F+++
Sbjct: 89 STRILYEGFVYNDWTDSCFGVNSSVYTNSQHCDTDRTGEKVDKTLGVMWNKMIDFISE-- 146
Query: 106 QLGKQEPEGRIACSLLSGSLSMALCYIQRV-FRSGLLHPQPRILCLQGSPDGPEQYVAIM 164
G P+ A + L+ +++ Y+ R+ R+ + I + S + QY+ +M
Sbjct: 147 --GLTYPD---ADTQLTSAIATGFLYLNRIRMRNEGYGRKIIIFDVSTSENYKSQYIGLM 201
Query: 165 NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVH--------------HKPQQLDGL 210
N +SA + I++ LG Q S L+Q S IT G + H Q L L
Sbjct: 202 NIAYSALAQNITINTFALG-QPSRILEQLSSITRGKYLLVSKVLNFDLNFSHINQYLSQL 260
Query: 211 --FQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKK 268
F YL + ++L S N VG+ C+CH ++D+ Y+C C ++YC +
Sbjct: 261 ITFWYLPSEGMSELLSTNLSFDFGNVGI-----CYCHYKSVDVSYLCPCCFAVYCSEIDD 315
Query: 269 -------CSTCGS 274
C CGS
Sbjct: 316 KGKYRIICMVCGS 328
>gi|119618835|gb|EAW98429.1| general transcription factor IIH, polypeptide 3, 34kDa, isoform
CRA_d [Homo sapiens]
Length = 200
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 76/149 (51%), Gaps = 23/149 (15%)
Query: 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIATGY 64
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHI 64
Query: 65 NSCDYVYDSSSTGNQSVGN-----GRMPSLCAT--------LLQNLEEFMNKD--EQLGK 109
++Y N +G+ G P + LL + E + ++ + + K
Sbjct: 65 QESRFLYPGK---NGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTK 121
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVFRS 138
+ +G+ +LL+GSL+ ALCYI R+ +
Sbjct: 122 SDIKGQHTETLLAGSLAKALCYIHRMNKE 150
>gi|198471480|ref|XP_002133743.1| GA22626 [Drosophila pseudoobscura pseudoobscura]
gi|198145935|gb|EDY72370.1| GA22626 [Drosophila pseudoobscura pseudoobscura]
Length = 390
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 70/159 (44%), Gaps = 9/159 (5%)
Query: 119 SLLSGSLSMALCYIQRVFR-----SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRS 173
SLL+ SL +ALCYIQ+ R S Q RIL + GS + Y N I A +
Sbjct: 157 SLLAESLGLALCYIQKRRRQIPNTSHGRSVQGRILIVTGSVLHEDVYKNYDNVIQEALET 216
Query: 174 MVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKP 233
V I+ C + LQ+A+ T G++ L L+ F L+ ++ P+
Sbjct: 217 NVTINVCAVKVPKQLPLQRATDTTDGLYFCTNDTMSLSGDLVDHF---LYPTYLIKSPRS 273
Query: 234 VGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTC 272
+ A C CH +G++C C + CKH C C
Sbjct: 274 -HIAVPARCACHGFGNKIGFVCGKCKLVLCKHSPYCDDC 311
>gi|449019603|dbj|BAM83005.1| similar to TFIIH subunit TFB4 [Cyanidioschyzon merolae strain 10D]
Length = 399
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 29/167 (17%)
Query: 141 LHPQPRILCLQGSPDGP---EQYVAIMNAIFSAQRSMVPIDSCYLGA--------QNSAF 189
L P+ R++ + S GP + V + NA F AQ+ + +D + A Q A
Sbjct: 231 LSPRARLVVI--SAPGPFDVAESVPLWNAAFCAQQHQLLVDVVRIEATSEPGTKPQARAA 288
Query: 190 LQQASYITGGVHHKPQ-QLDGLFQYLLTIFGTDLHSRNFLQLPKPV-------------- 234
LQQ +Y T G++ + + LF +L T + R +L P
Sbjct: 289 LQQLAYATQGIYLECRCACAKLFTHLATYIVPNRLERRYLTRRIPELGSYASGTERCGVV 348
Query: 235 -GVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQ 280
VD RA+CF + MGY+CS CLS+Y C C + A+
Sbjct: 349 ESVDLRATCFQSGKLVHMGYVCSRCLSVYSTPQAACIVCDARLDAAE 395
>gi|403223596|dbj|BAM41726.1| uncharacterized protein TOT_040000918 [Theileria orientalis strain
Shintoku]
Length = 332
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 78/168 (46%), Gaps = 33/168 (19%)
Query: 121 LSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG-PEQYVAIMNAIFSAQRSMVPIDS 179
L+ ++SM Y+ R+ +S + I+ S + QY+ +MN F+A + + I++
Sbjct: 141 LTSAISMGCLYLNRITKSKAGFGRKIIIFDVSSRENYKSQYIGLMNIAFTALKQNITINT 200
Query: 180 CYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRN----------FLQ 229
LG Q S L+Q S IT + LD L IF +D+ + N F
Sbjct: 201 LALG-QPSRILEQLSTITNA-----KYLD-----LSKIFQSDVETSNIEQSLSQLISFWL 249
Query: 230 LP-KPVG------VDFR----ASCFCHKNTIDMGYICSVCLSIYCKHL 266
LP + VG + F A C+CH T+++ Y+C C ++YC +
Sbjct: 250 LPSEEVGEILSTKLSFEFGNTAICYCHYKTVEVSYLCPCCFAVYCSEV 297
>gi|328769012|gb|EGF79057.1| hypothetical protein BATDEDRAFT_90182 [Batrachochytrium
dendrobatidis JAM81]
Length = 153
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 67/155 (43%), Gaps = 29/155 (18%)
Query: 41 VLAFLNAILTLNQLNQVVVIATGYNSCDYVYD----SSSTGNQSVGNGRMPSLCATLLQN 96
++ +NA L ++ N + VI T S +Y +S + SVG +P + TL
Sbjct: 1 MMVLVNAHLAMHHHNSLAVIGTTSTSSRLLYPPPSLASVSDRDSVGAASLPGMTGTLSTA 60
Query: 97 LE-------------------EFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR 137
E +F + D + +Q L+ +S A +I ++
Sbjct: 61 AESALPVGSTTLSKKPANVYKQFFDVDTHIVEQ------LRRLVLADVSAAPKHINKMQS 114
Query: 138 SGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
S Q RIL L SPDG QY+ IMNAIF+AQ+
Sbjct: 115 STTPDRQSRILVLSVSPDGSAQYIPIMNAIFAAQK 149
>gi|312078926|ref|XP_003141952.1| basic transcription factor 2 [Loa loa]
Length = 253
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 23/145 (15%)
Query: 119 SLLSGSLSMALCYIQR-----------VFR--SGLLHPQPRILCLQGSPDGPEQYVAIMN 165
++ + ++++A+C+I+ +FR + + + RIL + D ++ +MN
Sbjct: 101 AVFAPAVAIAICHIKDDRAILNNISSDIFRYKNEVDNGDGRILIINIGSDLRGEHSILMN 160
Query: 166 AIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL--TIFGTDLH 223
F+A + + ID +G + S LQQAS ITGG + ++ L +Y + T+ L
Sbjct: 161 IFFAAHKHNILIDVANIG-EASTILQQASDITGGTYFSVKKPKQLLKYTMCFTLGKASLR 219
Query: 224 SRNFLQLPKP---VGVDFRASCFCH 245
S P P VD+RASC CH
Sbjct: 220 S----AFPSPSSSTSVDYRASCHCH 240
>gi|321265019|ref|XP_003197226.1| hypothetical protein CGB_M0140C [Cryptococcus gattii WM276]
gi|317463705|gb|ADV25439.1| Hypothetical protein CGB_M0140C [Cryptococcus gattii WM276]
Length = 323
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/224 (25%), Positives = 86/224 (38%), Gaps = 60/224 (26%)
Query: 1 MASAPSKLYSDDVSLVVVLLDTNPFFW---------------------SSSSLSFSQFLT 39
M S PS L +V+LDT+P W SS S QF+T
Sbjct: 1 MPSPPSTL--------IVILDTHPLSWHLLSHLPPAPPIPDNKVLDTAKSSPTSLHQFIT 52
Query: 40 HVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPS---------LC 90
++ FLNA L N+VVV +Y S+ + G G P+ L
Sbjct: 53 ILIVFLNAHLASKWGNEVVVYTASAGKATLIYPPSNDKLRQRGEGGKPNANVYRPFQVLD 112
Query: 91 ATLLQNLEEFMNKDEQLGKQEPEGRI-ACSLLSGSLSMALCYIQRVFRSGLLHPQPRILC 149
+ + L+E + +++Q E G I + +L+ ALC+I R S H P L
Sbjct: 113 ERIEEGLKEVVREEQQKLDTEGPGFINEPPAMVSALTKALCFINRRILSS-AHNDPTALP 171
Query: 150 LQGSPDG----------PEQ----------YVAIMNAIFSAQRS 173
P+ P + YV +MN +F+AQ++
Sbjct: 172 PSSDPNNNNGDTSGGLLPSKERRQQRMRGGYVGLMNCVFAAQKA 215
>gi|164662823|ref|XP_001732533.1| hypothetical protein MGL_0308 [Malassezia globosa CBS 7966]
gi|159106436|gb|EDP45319.1| hypothetical protein MGL_0308 [Malassezia globosa CBS 7966]
Length = 276
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 84/215 (39%), Gaps = 48/215 (22%)
Query: 15 LVVVLLDTNPFFWSSSS-----------------LSFSQF---LTHVLAFLNAILTLNQL 54
+VV+LD N + W S ++FS + VL FLNA +
Sbjct: 23 FLVVILDLNAYAWQHVSETAKESEPSSTPSQQADVAFSTLKDTILSVLVFLNAYTAMQHG 82
Query: 55 NQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMP-----SLCATLLQNLEEFMNKDEQLGK 109
N +VV + +Y SS + + R P S C Q + + L
Sbjct: 83 NGLVVYGAATGTARLLYSSSPHVHPDTHSRRTPQDTHVSACLPFKQMDDAVFHGMRALFD 142
Query: 110 QEPEGRIACSLLSGSLSMALCYIQRVF-----------RSGLLHPQPR----------IL 148
+G + +L++ALC++ R+ SG L + R IL
Sbjct: 143 DARDGARGPVGMVRALALALCHMHRLSTVLSESTTTDPHSGALGARTRRGRNTSFLQRIL 202
Query: 149 CLQGSPDGPEQYVAIMNAIFSAQRSMVPID--SCY 181
L +PD QYV +MN IFSAQ+ + +D SC+
Sbjct: 203 VLSATPDVSAQYVPMMNCIFSAQKQGIQVDARSCF 237
>gi|58261942|ref|XP_568381.1| hypothetical protein CNM00130 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57230554|gb|AAW46864.1| hypothetical protein CNM00130 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 340
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 84/211 (39%), Gaps = 52/211 (24%)
Query: 14 SLVVVLLDTNPFFW---------------------SSSSLSFSQFLTHVLAFLNAILTLN 52
S ++++LDT+P W +SS S QF+T + FLNA L
Sbjct: 6 STLILVLDTHPLSWHLLAHLPPAPPLPDNKILDNATSSPTSLDQFITILTVFLNAHLASK 65
Query: 53 QLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA-----TLLQNLEEFMNK--DE 105
N+VVV + +Y S+ + G G PS L Q +EE + + E
Sbjct: 66 WGNEVVVYTASAGKAELIYPPSNEKIRQRGEGAKPSANMYRPFQILDQGIEEGLKEVVRE 125
Query: 106 QLGKQEPEGR---IACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG------ 156
+ GK EG + +L+ ALC+I R S + P L L P+
Sbjct: 126 EEGKLNTEGAGFINQPPAMVSALTKALCFINRRI-SPSVPADPTALPLSSDPNSGTSDTS 184
Query: 157 ----PEQ----------YVAIMNAIFSAQRS 173
P + YV +MN +F+AQ++
Sbjct: 185 GGLLPSKERRQQRMRGGYVGLMNCVFAAQKA 215
>gi|402471701|gb|EJW05288.1| hypothetical protein EDEG_00646 [Edhazardia aedis USNM 41457]
Length = 222
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 25/167 (14%)
Query: 113 EGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172
E ++ S L+ ++ LC I + S + +L L + Q + + A A+
Sbjct: 68 EYKVCSSNLAQDIAYTLCLINKNRDSS--EARIFVLNLDYQDNNTIQLLKVSTA---AKN 122
Query: 173 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPK 232
+ IDS Y Q S L Q ITGG++ + + +FG F +L
Sbjct: 123 MKIRIDS-YSSVQ-SPVLSQVCNITGGIYRTSLDI------FVNLFG-------FYELGD 167
Query: 233 PVGVDF-----RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGS 274
G D C CH N I +G +C +CL+IYC+ + C C +
Sbjct: 168 ESGTDMSGCFGNVKCICHGNIITLGLVCPICLAIYCRTVPICRVCKT 214
>gi|224106784|ref|XP_002333630.1| predicted protein [Populus trichocarpa]
gi|222837853|gb|EEE76218.1| predicted protein [Populus trichocarpa]
Length = 125
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 155 DGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 214
DGPEQ+VA+MNA F S+VPIDSC QAS +TG V+ K QQ+ +
Sbjct: 33 DGPEQHVAVMNATFCTPCSLVPIDSC-----------QASCVTGCVYVKSQQVSLVNHRP 81
Query: 215 LTIFGTDLHSRNFL 228
F ++ N L
Sbjct: 82 FISFAPEVAVENLL 95
>gi|291239973|ref|XP_002739904.1| PREDICTED: general transcription factor IIH, polypeptide 3,
34kDa-like [Saccoglossus kowalevskii]
Length = 143
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 69/136 (50%), Gaps = 20/136 (14%)
Query: 10 SDDVSLVVVLLDTNPFFW------SSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATG 63
++ SL+VV++D NP +W + L F+Q + +L ++N+ L +++ N+V +IA+
Sbjct: 4 EEESSLLVVIVDVNPIWWGKMRIQDENDLKFTQCMESILVYVNSHLMMHRSNKVAIIASH 63
Query: 64 YNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIAC----- 118
NS ++Y +++ + + E F D+ + K+ + A
Sbjct: 64 TNSSCFLYPTATPTTEEEEDFLRDG-------KYEHFAKIDDTIFKEVKKLMTAHTAELH 116
Query: 119 --SLLSGSLSMALCYI 132
+LL+GSL+MALC I
Sbjct: 117 IDTLLTGSLAMALCCI 132
>gi|336271807|ref|XP_003350661.1| hypothetical protein SMAC_02333 [Sordaria macrospora k-hell]
gi|380094822|emb|CCC07324.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 409
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 10 SDDV-SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS 66
+DD+ SL +++DTNP W++ L ++ L ++L F+N+ L N NQV +IA+ N
Sbjct: 18 TDDIPSLYTIIIDTNPRAWAALNDVLPLTKALANILIFVNSHLAFNNSNQVALIASHTNR 77
Query: 67 CDYVYDSSSTGN 78
++Y ++ N
Sbjct: 78 AVWLYPTAPDQN 89
>gi|134118157|ref|XP_772246.1| hypothetical protein CNBM0140 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254857|gb|EAL17599.1| hypothetical protein CNBM0140 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 385
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 70/173 (40%), Gaps = 32/173 (18%)
Query: 14 SLVVVLLDTNPFFW---------------------SSSSLSFSQFLTHVLAFLNAILTLN 52
S ++++LDT+P W +SS S QF+T + FLNA L
Sbjct: 6 STLILVLDTHPLSWHLLAHLPPAPPLPDNKILDNATSSPTSLDQFITILTVFLNAHLASK 65
Query: 53 QLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLC-----ATLLQNLEEFMNK--DE 105
N+VVV + +Y S+ + G G PS L Q +EE + + E
Sbjct: 66 WGNEVVVYTASAGKAELIYPPSNEKIRQRGEGAKPSANMYRPFQILDQGIEEGLKEVVRE 125
Query: 106 QLGKQEPEGR---IACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPD 155
+ GK EG + +L+ ALC+I R S + P L L P+
Sbjct: 126 EEGKLNTEGAGFINQPPAMVSALTKALCFINRRI-SPSVPTDPTALPLSSDPN 177
>gi|160331405|ref|XP_001712410.1| hypothetical protein HAN_2g261 [Hemiselmis andersenii]
gi|159765858|gb|ABW98085.1| hypothetical protein HAN_2g261 [Hemiselmis andersenii]
Length = 293
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 22/139 (15%)
Query: 153 SPDGPEQYVAIMNAIFS-AQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLF 211
S ++++A N +F AQ++ D+ G ++ F S T G++ +P L LF
Sbjct: 162 SSKTRKEHIAFSNQLFFLAQKNKFSFDTLLFGRKDCFFFHFLSEKTKGIYCRP--LKNLF 219
Query: 212 QY---------LLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDM----GYICSVC 258
+ LL++F T SR F LP F KNT ++ + C +C
Sbjct: 220 ELAFTEEFITILLSLFLTSPFSREFYILP------FSTKILNKKNTTNLIAKKKFSCPIC 273
Query: 259 LSIYCKHLKKCSTCGSVFG 277
SI+ C CG VF
Sbjct: 274 FSIFNFLFTNCFVCGFVFS 292
>gi|387592672|gb|EIJ87696.1| hypothetical protein NEQG_02243 [Nematocida parisii ERTm3]
gi|387595301|gb|EIJ92926.1| hypothetical protein NEPG_02325 [Nematocida parisii ERTm1]
Length = 210
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 168 FSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF 227
F+A++ + +D C + N F+ Q S + + LF+YL+ + D F
Sbjct: 111 FTARKLNIHVD-CII--PNDGFVSQVSDVLKRPAFCISSGESLFEYLMGMLSID-----F 162
Query: 228 LQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
++ + + C CH I GY+C +CL +YCK + C C + F
Sbjct: 163 GRISRK---NVHRFCICHNKEIQTGYLCPICLGLYCKFVPLCKHCKTRF 208
>gi|378754778|gb|EHY64807.1| hypothetical protein NERG_02210 [Nematocida sp. 1 ERTm2]
Length = 210
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 168 FSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHSRNF 227
F+A++ + +D C + + F Q S + + LF+YL+ + D F
Sbjct: 111 FTAKKQNIHVD-CVI--PHDGFASQISDVLNRPAFSISSNESLFEYLMGMLSMD-----F 162
Query: 228 LQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
++ K + C CH I GY+C +CL +YCK + C C + F
Sbjct: 163 GRISKK---NLSRFCICHHKEIQTGYLCPICLGLYCKFVPLCKHCKTRF 208
>gi|440302599|gb|ELP94906.1| RNA polymerase II transcription factor B subunit, partial
[Entamoeba invadens IP1]
Length = 188
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 121 LSGSLSMALCYIQRVFRSG-LLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDS 179
LS ++S A+C I +S LH +I+ + + ++ +MN IF+AQ+ V ID+
Sbjct: 89 LSAAMSSAMCRINSYSKSNPTLHK--KIVAISTPLNAAPTFITVMNNIFAAQKIGVSIDT 146
Query: 180 CYLGAQNS--AFLQQASYITGGVHHKPQQLDGLFQYLL 215
+ QQASY+T G+++ LD L LL
Sbjct: 147 IVISDNEEPCTICQQASYLTNGIYNM-SSLDTLLPRLL 183
>gi|269860080|ref|XP_002649763.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB4 [Enterocytozoon
bieneusi H348]
gi|220066822|gb|EED44293.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB4 [Enterocytozoon
bieneusi H348]
Length = 202
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 233 PVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFG 277
P+ +F +C+C TI +G+ CS+CL+IYCK + C C F
Sbjct: 155 PILNNFGVNCYCCNKTIYLGFCCSICLTIYCKFIPICKKCKIKFN 199
>gi|429963037|gb|ELA42581.1| hypothetical protein VICG_00333 [Vittaforma corneae ATCC 50505]
Length = 215
Score = 44.3 bits (103), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 159 QYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIF 218
QY+ + +F AQ +PI + ++ +GG+ + +FQ L
Sbjct: 110 QYLEYLKCMFVAQHRKIPIHG--FSLHRNILVRMCCEGSGGIFLESCSFSDMFQLL---- 163
Query: 219 GTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVF 276
G ++ Q+ C C N + +G +C VCL +YCK + C C + F
Sbjct: 164 GNRTKKKDAYQI----------KCACCNNFVTLGLVCPVCLLVYCKFMPVCKKCKTKF 211
>gi|68065658|ref|XP_674813.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56493631|emb|CAH95047.1| hypothetical protein PB001049.00.0 [Plasmodium berghei]
Length = 89
Score = 42.0 bits (97), Expect = 0.32, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 240 ASCFCHKNTIDMGYICSVCLSIYC--------KHLKKCSTCGSVFGQAQTQSDEPSATN 290
A C CH ID+ YICS CL+IYC K CS C + F ++ ++ S N
Sbjct: 27 AVCTCHNKQIDIAYICSCCLAIYCSEKDAQTNKERISCSVCKTRFTKSLLRNKTVSDLN 85
>gi|403359548|gb|EJY79438.1| putative: similar to general transcription factor IIH, polypeptide
3, 34kDa [Oxytricha trifallax]
gi|403360227|gb|EJY79783.1| putative: similar to general transcription factor IIH, polypeptide
3, 34kDa [Oxytricha trifallax]
Length = 255
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 28/129 (21%)
Query: 118 CSLLSGSLSMALCYIQRVFRSGLLHPQP----RILCLQGSPDGPEQYVAIMNAIFSAQRS 173
CSL S ++ A+C+ ++ + RI+ ++ + P QY +++NAIF+AQ+
Sbjct: 114 CSL-STAMMKAVCFNKKWIEDVAVKRSESFSARIMIVKFQSEDPSQYSSLVNAIFAAQKL 172
Query: 174 MVPIDSCYL--------------------GAQNSAFLQQASYITGGVHHK--PQQLDG-L 210
+ +DS + + S+ LQQA+ +T G +K LD L
Sbjct: 173 KISVDSLIIQYAPPQAIQEPQDGKQQPASQEEESSLLQQAALLTNGTSYKLFSNNLDSEL 232
Query: 211 FQYLLTIFG 219
F LL +F
Sbjct: 233 FPTLLELFS 241
>gi|403376319|gb|EJY88136.1| putative: similar to general transcription factor IIH, polypeptide
3, 34kDa [Oxytricha trifallax]
Length = 230
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 23/97 (23%)
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYL--------------------GAQ 185
RI+ ++ + P QY +++NAIF+AQ+ + +DS + +
Sbjct: 120 RIMIVKFQSEDPSQYSSLVNAIFAAQKLKISVDSLIIQYAPPQAIQEPQDGKQQPASQEE 179
Query: 186 NSAFLQQASYITGGVHHK--PQQLDG-LFQYLLTIFG 219
S+ LQQA+ +T G +K LD LF LL +F
Sbjct: 180 ESSLLQQAALLTNGTSYKLFSNNLDSELFPTLLELFS 216
>gi|429965399|gb|ELA47396.1| hypothetical protein VCUG_01165 [Vavraia culicis 'floridensis']
Length = 215
Score = 40.8 bits (94), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 52/136 (38%), Gaps = 26/136 (19%)
Query: 146 RILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQ 205
RI+ + S + + Y+ + + F A+R Y N + L HHK
Sbjct: 99 RIIIISLSRENNKDYLKYLKSAFVAKR--------YSDRYNISVLS---------HHKNP 141
Query: 206 QLDGLFQYLLTIFGTDLHSRNFLQL---PKPVGVDF-RASCFCHKNTIDMGYICSVCLSI 261
L + F + FLQ+ KP + F C CH I G +C VCLSI
Sbjct: 142 ALSEI-----GCFYNNFALSTFLQILSGKKPQKIFFCSTKCSCHDREILYGLVCPVCLSI 196
Query: 262 YCKHLKKCSTCGSVFG 277
YC + C C F
Sbjct: 197 YCSLIPICKRCRIRFN 212
>gi|395755950|ref|XP_003780047.1| PREDICTED: general transcription factor IIH subunit 3-like,
partial [Pongo abelii]
Length = 61
Score = 40.8 bits (94), Expect = 0.76, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 11 DDVSLVVVLLDTNPFFWSSSSLSFSQF-----LTHVLAFLNAILTLNQLNQVVVIAT 62
D+++L+V+++D NP +W +L SQF + V+ N+ L +N+ N++ VIA+
Sbjct: 1 DELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIAS 57
>gi|195389498|ref|XP_002053413.1| GJ23349 [Drosophila virilis]
gi|194151499|gb|EDW66933.1| GJ23349 [Drosophila virilis]
Length = 490
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 199 GVHHKPQQLDGLFQYLLTIFGTDLHSRNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVC 258
G + +GL +L F L PK +D RA C+CH I++G CS C
Sbjct: 9 GFYFDTSAFEGLCMNVLCQFLASTQRVYHLNYPKQSPMDLRALCYCHNKRIEIGRACSNC 68
Query: 259 LS 260
LS
Sbjct: 69 LS 70
>gi|84997465|ref|XP_953454.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65304450|emb|CAI76829.1| hypothetical protein, conserved [Theileria annulata]
Length = 391
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 37/164 (22%)
Query: 147 ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGG------- 199
I + S + QY+ +MN +SA + I++ LG Q S L+Q S IT
Sbjct: 209 IFDISNSENYKSQYIGLMNIAYSALSQNITINTFALG-QPSRILEQLSAITNAKYLLVSK 267
Query: 200 -------VHHKPQQLDGLFQYLL--TIFGTDLHSRNFLQ-LPKPVGVDF--RASCFCHKN 247
+H Q L L L+ I L S + L + DF C+CH
Sbjct: 268 LLNFDLNFNHINQYLTQLITVLILFIILFWYLPSEGMSEMLSTNLSFDFGNVGICYCHYK 327
Query: 248 TIDMGYICSVCLS----------IYC-------KHLKKCSTCGS 274
++D+ Y+C C + +YC K+ C CGS
Sbjct: 328 SVDVTYLCPCCFAGNFYSLIRFIVYCSEIDDKGKYRIICMVCGS 371
>gi|291000862|ref|XP_002682998.1| RNA polymerase II transcription factor TFIIH subunit [Naegleria
gruberi]
gi|284096626|gb|EFC50254.1| RNA polymerase II transcription factor TFIIH subunit [Naegleria
gruberi]
Length = 349
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 18/32 (56%)
Query: 242 CFCHKNTIDMGYICSVCLSIYCKHLKKCSTCG 273
C CHK GYIC C S YC +CSTCG
Sbjct: 240 CLCHKKITPGGYICPRCKSKYCDLPVECSTCG 271
>gi|413935397|gb|AFW69948.1| hypothetical protein ZEAMMB73_462205, partial [Zea mays]
Length = 22
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 20/22 (90%)
Query: 251 MGYICSVCLSIYCKHLKKCSTC 272
MGY+CSVCLSI+C++ K CSTC
Sbjct: 1 MGYVCSVCLSIFCRNQKTCSTC 22
>gi|118401911|ref|XP_001033275.1| hypothetical protein TTHERM_00420200 [Tetrahymena thermophila]
gi|89287623|gb|EAR85612.1| hypothetical protein TTHERM_00420200 [Tetrahymena thermophila
SB210]
Length = 351
Score = 38.1 bits (87), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 12/69 (17%)
Query: 209 GLFQYL--LTIFGTDLHSRNFLQLPK-PV-------GVDFRASCFCHKNTID--MGYICS 256
LF Y+ L + D+ ++ QL K PV V FR +C CH +D + Y+CS
Sbjct: 270 DLFNYISILMLTSGDMLAKPEQQLTKNPVFRPAINEKVQFRVNCSCHNTPMDSDIAYVCS 329
Query: 257 VCLSIYCKH 265
CL +YCK
Sbjct: 330 DCLFLYCKQ 338
>gi|440492213|gb|ELQ74803.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB4 [Trachipleistophora
hominis]
Length = 247
Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 227 FLQL---PKPVGVDF-RASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFG 277
FLQ+ KP + F C CH I G +C VCLSIYC + C C F
Sbjct: 190 FLQILCGRKPQKIFFCSTKCNCHGREILYGLVCPVCLSIYCSLIPICKRCRIRFN 244
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,564,603,000
Number of Sequences: 23463169
Number of extensions: 185319872
Number of successful extensions: 373592
Number of sequences better than 100.0: 398
Number of HSP's better than 100.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 372179
Number of HSP's gapped (non-prelim): 535
length of query: 298
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 157
effective length of database: 9,050,888,538
effective search space: 1420989500466
effective search space used: 1420989500466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 76 (33.9 bits)