Query 022374
Match_columns 298
No_of_seqs 114 out of 354
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 04:26:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2x5n_A SPRPN10, 26S proteasome 99.5 1.6E-12 5.5E-17 112.9 18.2 171 14-215 3-182 (192)
2 4b4t_W RPN10, 26S proteasome r 99.4 3.7E-12 1.3E-16 116.1 17.1 171 16-216 6-187 (268)
3 3ibs_A Conserved hypothetical 99.2 4.1E-10 1.4E-14 97.6 17.1 173 9-216 7-207 (218)
4 1shu_X Anthrax toxin receptor 99.0 2.1E-08 7E-13 84.2 17.5 170 13-215 6-175 (182)
5 1q0p_A Complement factor B; VO 98.8 4.1E-08 1.4E-12 84.9 12.4 183 12-215 14-213 (223)
6 4fx5_A VON willebrand factor t 98.8 3.4E-07 1.2E-11 89.4 18.2 175 13-216 77-252 (464)
7 3n2n_F Anthrax toxin receptor 98.7 3.8E-07 1.3E-11 76.6 14.3 170 13-214 7-177 (185)
8 1atz_A VON willebrand factor; 98.7 1.3E-06 4.5E-11 74.0 17.2 169 13-213 5-176 (189)
9 2b2x_A Integrin alpha-1; compu 98.7 6.3E-07 2.1E-11 78.2 15.2 167 13-214 22-204 (223)
10 1ijb_A VON willebrand factor; 98.6 2.5E-06 8.7E-11 73.3 18.1 174 13-214 13-188 (202)
11 1n3y_A Integrin alpha-X; alpha 98.6 1.6E-07 5.3E-12 80.0 9.3 171 12-212 8-184 (198)
12 1rrk_A Complement factor B; BB 98.6 8.1E-07 2.8E-11 86.2 15.5 183 15-218 3-202 (497)
13 1v7p_C Integrin alpha-2; snake 98.5 4.2E-06 1.4E-10 71.5 16.8 171 13-214 6-188 (200)
14 2odp_A Complement C2; C3/C5 co 98.5 1.8E-06 6.3E-11 84.1 16.3 187 11-218 7-210 (509)
15 4hqf_A Thrombospondin-related 98.5 3.1E-06 1.1E-10 76.5 16.7 175 13-213 21-201 (281)
16 1pt6_A Integrin alpha-1; cell 98.5 1.4E-06 4.7E-11 75.4 13.5 165 13-213 7-188 (213)
17 1jey_B KU80; double-strand DNA 98.4 6.5E-06 2.2E-10 82.1 16.6 177 14-206 8-229 (565)
18 3hrz_D Complement factor B; se 98.4 4E-06 1.4E-10 85.3 14.6 183 13-216 243-442 (741)
19 4hqo_A Sporozoite surface prot 98.4 1.4E-05 5E-10 71.7 16.2 177 13-215 18-200 (266)
20 1mf7_A Integrin alpha M; cell 98.3 1.2E-06 4E-11 74.5 7.8 170 13-212 5-180 (194)
21 2x31_A Magnesium-chelatase 60 98.3 1.2E-08 4.1E-13 86.6 -5.0 161 12-206 4-173 (189)
22 3zqk_A VON willebrand factor; 98.0 0.00023 8E-09 60.7 15.9 168 11-216 19-188 (199)
23 2xgg_A Microneme protein 2; A/ 98.0 0.0002 6.7E-09 60.0 14.5 153 13-192 17-170 (178)
24 1jey_A KU70; double-strand DNA 97.7 0.00054 1.9E-08 68.9 15.1 150 14-185 36-208 (609)
25 1mjn_A Integrin alpha-L; rossm 97.6 3.7E-05 1.3E-09 64.7 4.6 156 15-210 4-168 (179)
26 3k6s_A Integrin alpha-X; cell 97.4 0.00013 4.5E-09 78.0 6.5 166 13-210 130-303 (1095)
27 3rag_A Uncharacterized protein 96.9 0.0038 1.3E-07 55.6 9.0 48 165-213 29-82 (242)
28 3rag_A Uncharacterized protein 95.9 0.019 6.4E-07 51.1 7.4 99 10-139 131-232 (242)
29 1yvr_A RO autoantigen, 60-kDa 95.1 0.71 2.4E-05 45.2 16.4 51 11-64 366-417 (538)
30 1pcx_A Protein transport prote 94.7 0.73 2.5E-05 47.7 15.8 82 117-206 304-412 (810)
31 3eh2_A Protein transport prote 94.3 5.4 0.00018 40.9 21.1 170 13-206 173-397 (766)
32 3efo_B SEC24 related gene fami 94.3 4.5 0.00015 41.5 20.5 170 13-206 177-401 (770)
33 2nut_A Protein transport prote 94.2 3.7 0.00013 42.1 19.8 99 117-219 264-395 (769)
34 2nvo_A RO sixty-related protei 93.9 0.54 1.9E-05 46.2 12.3 149 11-202 360-535 (535)
35 1m2v_B SEC24, protein transpor 93.5 1.1 3.7E-05 47.1 14.3 173 12-206 302-528 (926)
36 6rxn_A Rubredoxin; electron tr 92.5 0.062 2.1E-06 35.4 2.2 24 252-275 4-39 (46)
37 2lcq_A Putative toxin VAPC6; P 92.2 0.09 3.1E-06 43.6 3.3 34 247-280 127-162 (165)
38 3eh1_A Protein transport prote 92.1 12 0.0004 38.4 20.1 176 12-206 159-376 (751)
39 3pwf_A Rubrerythrin; non heme 92.1 0.082 2.8E-06 44.4 3.0 26 250-275 136-162 (170)
40 1lko_A Rubrerythrin all-iron(I 89.8 0.13 4.3E-06 44.0 2.0 24 252-275 155-180 (191)
41 2v3b_B Rubredoxin 2, rubredoxi 89.6 0.19 6.4E-06 34.3 2.3 24 252-275 3-45 (55)
42 2kn9_A Rubredoxin; metalloprot 89.0 0.2 7E-06 36.9 2.3 25 251-275 26-69 (81)
43 2ww8_A RRGA, cell WALL surface 88.4 2.3 7.7E-05 44.5 10.6 54 10-64 221-277 (893)
44 1yuz_A Nigerythrin; rubrythrin 87.6 0.27 9.2E-06 42.4 2.6 25 251-275 170-195 (202)
45 4rxn_A Rubredoxin; electron tr 87.5 0.29 9.9E-06 33.3 2.2 24 252-275 3-45 (54)
46 1yk4_A Rubredoxin, RD; electro 87.3 0.28 9.6E-06 33.0 2.0 24 252-275 2-44 (52)
47 1s24_A Rubredoxin 2; electron 86.0 0.37 1.3E-05 36.0 2.3 24 251-274 34-76 (87)
48 1dx8_A Rubredoxin; electron tr 86.0 0.4 1.4E-05 34.3 2.3 24 252-275 7-49 (70)
49 1e8j_A Rubredoxin; iron-sulfur 85.7 0.46 1.6E-05 32.0 2.4 24 252-275 3-45 (52)
50 3fcs_B Integrin beta-3; beta p 82.6 14 0.00049 37.3 12.9 56 162-218 291-348 (690)
51 3j21_g 50S ribosomal protein L 78.3 1.9 6.6E-05 28.8 3.2 29 251-280 13-41 (51)
52 1z60_A TFIIH basal transcripti 77.6 1 3.5E-05 31.1 1.8 33 241-273 17-59 (59)
53 2gmg_A Hypothetical protein PF 77.3 1.2 4.2E-05 34.3 2.3 32 249-280 64-98 (105)
54 3k6s_B Integrin beta-2; cell r 76.5 3.4 0.00012 41.9 6.0 43 163-206 282-324 (687)
55 3mjh_B Early endosome antigen 76.1 1.2 4E-05 27.3 1.6 10 252-261 5-14 (34)
56 2iue_A Pactolus I-domain; memb 73.6 43 0.0015 28.7 14.2 170 15-215 5-206 (212)
57 1vd4_A Transcription initiatio 72.5 2.5 8.7E-05 28.1 2.8 31 250-280 12-53 (62)
58 1twf_L ABC10-alpha, DNA-direct 72.3 3.3 0.00011 29.5 3.4 32 249-280 25-59 (70)
59 2lv2_A Insulinoma-associated p 70.2 2.1 7.2E-05 31.2 2.0 29 252-280 28-70 (85)
60 4ayb_P DNA-directed RNA polyme 69.9 2.3 8E-05 27.8 1.9 31 253-283 4-40 (48)
61 1m2o_A SEC23, protein transpor 67.3 1.1E+02 0.0039 31.0 24.8 99 117-219 258-389 (768)
62 4gzn_C ZFP-57, zinc finger pro 66.5 2.9 9.9E-05 28.3 2.0 29 252-280 4-46 (60)
63 1pft_A TFIIB, PFTFIIBN; N-term 66.4 1.6 5.4E-05 28.6 0.6 30 251-280 4-38 (50)
64 1x4s_A Protein FON, zinc finge 64.1 2.4 8.2E-05 29.2 1.1 27 240-266 12-40 (59)
65 2apo_B Ribosome biogenesis pro 63.5 4.6 0.00016 27.9 2.5 26 253-280 7-32 (60)
66 2eps_A POZ-, at HOOK-, and zin 63.2 7.3 0.00025 24.7 3.5 30 249-278 9-53 (54)
67 3uk3_C Zinc finger protein 217 62.6 2.7 9.3E-05 26.8 1.2 29 252-280 4-46 (57)
68 2yqq_A Zinc finger HIT domain- 59.3 3.6 0.00012 28.0 1.4 22 241-265 14-36 (56)
69 1bbo_A Human enhancer-binding 57.9 3.7 0.00013 26.1 1.2 28 253-280 2-43 (57)
70 1x6e_A Zinc finger protein 24; 57.1 5.4 0.00018 26.9 2.0 31 250-280 12-56 (72)
71 1x5w_A Zinc finger protein 64, 56.3 5.4 0.00019 26.7 1.9 30 251-280 8-51 (70)
72 2d9g_A YY1-associated factor 2 53.9 14 0.00049 24.5 3.7 34 250-283 9-42 (53)
73 1wff_A Riken cDNA 2810002D23 p 53.5 9.8 0.00034 28.1 3.0 42 238-280 24-69 (85)
74 2adr_A ADR1; transcription reg 53.4 4.6 0.00016 26.0 1.1 28 253-280 3-44 (60)
75 2ko5_A Ring finger protein Z; 53.1 3.1 0.00011 31.4 0.2 38 252-289 47-84 (99)
76 1wfp_A Zinc finger (AN1-like) 53.1 10 0.00035 27.2 2.9 42 238-280 24-68 (74)
77 1wg2_A Zinc finger (AN1-like) 53.0 6.5 0.00022 27.5 1.8 41 239-280 15-58 (64)
78 2gqj_A Zinc finger protein KIA 52.8 2.2 7.6E-05 31.1 -0.6 31 250-280 22-68 (98)
79 2ctd_A Zinc finger protein 512 52.5 8.6 0.00029 28.1 2.6 30 251-280 33-76 (96)
80 3b08_B Ranbp-type and C3HC4-ty 51.0 14 0.00048 25.7 3.3 30 251-280 7-36 (64)
81 2epq_A POZ-, at HOOK-, and zin 50.9 7.9 0.00027 23.3 1.9 12 252-263 10-21 (45)
82 2kdx_A HYPA, hydrogenase/ureas 50.7 10 0.00036 29.2 3.0 29 249-277 70-101 (119)
83 1nj3_A NPL4; NZF domain, rubre 50.1 14 0.00048 21.4 2.8 26 251-276 5-30 (31)
84 1wfh_A Zinc finger (AN1-like) 49.9 7.7 0.00026 27.1 1.8 40 240-280 16-58 (64)
85 3irb_A Uncharacterized protein 49.3 7.2 0.00025 31.4 1.9 26 250-275 45-70 (145)
86 3h0g_L DNA-directed RNA polyme 49.2 11 0.00038 26.1 2.6 33 250-282 19-54 (63)
87 2ctu_A Zinc finger protein 483 48.3 6.1 0.00021 26.2 1.1 31 250-280 16-53 (73)
88 2jny_A Uncharacterized BCR; st 47.8 4.3 0.00015 28.6 0.2 28 253-280 11-42 (67)
89 2d9h_A Zinc finger protein 692 47.3 9.2 0.00031 26.0 2.0 31 250-280 5-52 (78)
90 1vq8_Z 50S ribosomal protein L 47.3 5.1 0.00018 29.4 0.6 36 251-286 26-65 (83)
91 2lce_A B-cell lymphoma 6 prote 47.3 6.3 0.00021 26.7 1.1 30 251-280 16-59 (74)
92 2j9u_B VPS36, vacuolar protein 47.1 12 0.0004 27.0 2.5 30 248-277 13-51 (76)
93 3f2b_A DNA-directed DNA polyme 47.0 8.2 0.00028 40.9 2.3 40 239-278 485-539 (1041)
94 2js4_A UPF0434 protein BB2007; 46.6 4.9 0.00017 28.5 0.4 28 253-280 9-40 (70)
95 2egp_A Tripartite motif-contai 46.1 15 0.00052 25.3 3.0 15 266-280 53-67 (79)
96 2drp_A Protein (tramtrack DNA- 45.9 10 0.00035 24.7 2.0 30 251-280 9-54 (66)
97 3a9j_C Mitogen-activated prote 44.6 18 0.00061 21.5 2.7 25 251-275 7-31 (34)
98 2aus_D NOP10, ribosome biogene 44.4 13 0.00045 25.5 2.3 26 253-280 6-31 (60)
99 2wbt_A B-129; zinc finger; 2.7 44.0 14 0.00049 27.7 2.8 30 251-280 73-114 (129)
100 1llm_C Chimera of ZIF23-GCN4; 43.9 11 0.00038 26.3 2.0 27 253-279 4-44 (88)
101 2amj_A Modulator of drug activ 43.4 38 0.0013 28.2 5.7 64 141-204 9-78 (204)
102 2kmk_A Zinc finger protein GFI 43.1 12 0.0004 25.4 2.0 29 252-280 29-71 (82)
103 2ct1_A Transcriptional repress 43.1 12 0.00041 25.3 2.1 30 251-280 14-59 (77)
104 2yt9_A Zinc finger-containing 42.6 16 0.00056 25.5 2.8 29 252-280 35-79 (95)
105 1a1h_A QGSR zinc finger peptid 42.3 12 0.00042 25.9 2.0 29 252-280 34-76 (90)
106 1wii_A Hypothetical UPF0222 pr 42.1 5.6 0.00019 29.4 0.1 32 249-280 20-61 (85)
107 2ecv_A Tripartite motif-contai 41.7 17 0.0006 25.1 2.8 17 266-282 59-75 (85)
108 2jrp_A Putative cytoplasmic pr 41.4 10 0.00035 27.7 1.4 24 252-276 18-41 (81)
109 2cot_A Zinc finger protein 435 41.2 8.7 0.0003 26.1 1.0 31 250-280 16-60 (77)
110 2zjr_Z 50S ribosomal protein L 41.1 13 0.00043 25.5 1.8 21 253-275 31-52 (60)
111 2lt7_A Transcriptional regulat 40.9 12 0.0004 29.2 1.9 12 267-278 79-90 (133)
112 3mkr_B Coatomer subunit alpha; 40.8 11 0.00039 34.5 2.0 37 241-277 264-305 (320)
113 2ect_A Ring finger protein 126 40.6 17 0.00058 25.1 2.5 31 253-283 39-69 (78)
114 2dmd_A Zinc finger protein 64, 40.3 14 0.00047 26.0 2.0 30 251-280 35-78 (96)
115 1gh9_A 8.3 kDa protein (gene M 40.1 6 0.0002 28.2 -0.0 26 252-279 4-33 (71)
116 2lk0_A RNA-binding protein 5; 39.7 23 0.00077 20.9 2.6 25 251-275 4-28 (32)
117 2crc_A Ubiquitin conjugating e 39.6 20 0.00068 23.8 2.5 31 250-280 8-38 (52)
118 3jyw_9 60S ribosomal protein L 39.2 13 0.00045 26.5 1.7 33 251-283 25-61 (72)
119 2dlq_A GLI-kruppel family memb 39.2 18 0.00062 26.5 2.7 31 250-280 64-108 (124)
120 3nw0_A Non-structural maintena 39.1 24 0.00083 30.7 3.8 41 240-280 181-231 (238)
121 1wfl_A Zinc finger protein 216 38.8 13 0.00045 26.6 1.6 41 239-280 25-68 (74)
122 1qxf_A GR2, 30S ribosomal prot 38.6 9.3 0.00032 26.8 0.8 27 254-280 9-40 (66)
123 3mv2_A Coatomer subunit alpha; 38.0 13 0.00045 34.1 1.9 26 252-277 287-314 (325)
124 1f2i_G Fusion of N-terminal 17 38.0 15 0.00052 24.4 1.9 30 251-280 18-63 (73)
125 3cc2_Z 50S ribosomal protein L 37.7 10 0.00035 29.6 1.0 35 252-286 60-98 (116)
126 2gnr_A Conserved hypothetical 37.7 14 0.00048 29.8 1.9 26 250-275 45-70 (145)
127 2epr_A POZ-, at HOOK-, and zin 37.1 22 0.00077 21.5 2.5 13 251-263 11-23 (48)
128 2kre_A Ubiquitin conjugation f 36.5 14 0.00047 27.6 1.5 17 266-282 63-79 (100)
129 2hf1_A Tetraacyldisaccharide-1 35.8 10 0.00034 26.7 0.6 28 253-280 9-40 (68)
130 2pk7_A Uncharacterized protein 35.6 11 0.00039 26.5 0.8 28 253-280 9-40 (69)
131 2csh_A Zinc finger protein 297 35.1 18 0.00061 26.2 2.0 28 252-279 37-78 (110)
132 2jr6_A UPF0434 protein NMA0874 34.9 11 0.00036 26.6 0.6 28 253-280 9-40 (68)
133 2ee8_A Protein ODD-skipped-rel 34.7 18 0.00062 25.9 2.0 30 251-280 44-87 (106)
134 3axs_A Probable N(2),N(2)-dime 33.5 20 0.00068 33.6 2.4 31 250-280 240-277 (392)
135 2yu4_A E3 SUMO-protein ligase 33.4 9.5 0.00032 28.0 0.2 9 267-275 49-59 (94)
136 2c2l_A CHIP, carboxy terminus 33.3 15 0.00051 31.8 1.5 25 258-282 226-259 (281)
137 2ct0_A Non-SMC element 1 homol 33.2 51 0.0017 23.3 4.1 41 240-280 16-66 (74)
138 2dlk_A Novel protein; ZF-C2H2 33.1 30 0.001 23.2 2.8 26 251-276 37-78 (79)
139 1e4u_A Transcriptional repress 33.1 38 0.0013 23.9 3.4 15 266-280 50-64 (78)
140 2jvx_A NF-kappa-B essential mo 32.4 17 0.00057 21.1 1.1 9 253-261 4-12 (28)
141 3a43_A HYPD, hydrogenase nicke 31.6 22 0.00075 28.4 2.1 28 250-277 68-118 (139)
142 2k0a_A PRE-mRNA-splicing facto 31.4 15 0.00052 28.0 1.0 17 243-259 12-29 (109)
143 3iz6_X 40S ribosomal protein S 30.9 22 0.00074 26.2 1.7 27 254-280 38-69 (86)
144 3tem_A Ribosyldihydronicotinam 30.6 65 0.0022 27.4 5.2 39 145-183 2-41 (228)
145 2k1p_A Zinc finger RAN-binding 30.6 27 0.00092 20.7 1.9 25 251-275 5-29 (33)
146 3j20_W 30S ribosomal protein S 30.5 15 0.00051 25.5 0.8 27 254-280 17-48 (63)
147 2eq0_A Zinc finger protein 347 30.2 36 0.0012 20.1 2.5 13 251-263 11-23 (46)
148 2ytk_A Zinc finger protein 347 29.7 37 0.0013 20.0 2.6 13 251-263 11-23 (46)
149 2k4x_A 30S ribosomal protein S 29.5 22 0.00074 23.8 1.4 31 247-277 13-47 (55)
150 1x6h_A Transcriptional repress 29.3 26 0.00091 23.7 2.0 30 251-280 14-61 (86)
151 2kvh_A Zinc finger and BTB dom 29.2 23 0.00079 18.1 1.3 10 253-262 4-13 (27)
152 2ema_A Zinc finger protein 347 29.0 38 0.0013 20.0 2.5 13 251-263 11-23 (46)
153 2ysl_A Tripartite motif-contai 28.7 36 0.0012 22.9 2.6 13 267-279 58-70 (73)
154 1dl6_A Transcription factor II 28.2 19 0.00065 24.3 1.0 27 254-280 13-44 (58)
155 2el4_A Zinc finger protein 268 28.1 38 0.0013 19.9 2.4 12 252-263 12-23 (46)
156 3gj3_B Nuclear pore complex pr 28.1 49 0.0017 19.8 2.7 26 250-275 5-30 (33)
157 2emh_A Zinc finger protein 484 27.8 43 0.0015 19.7 2.6 13 251-263 11-23 (46)
158 4gi5_A Quinone reductase; prot 27.7 89 0.003 27.7 5.6 38 146-183 24-62 (280)
159 1ltl_A DNA replication initiat 27.6 24 0.00083 31.2 1.9 28 248-275 130-165 (279)
160 1ffk_W Ribosomal protein L37AE 27.6 16 0.00053 26.2 0.4 32 252-283 27-62 (73)
161 2ecw_A Tripartite motif-contai 27.4 21 0.00072 24.7 1.2 15 266-280 59-73 (85)
162 3k1y_A Oxidoreductase; structu 27.3 71 0.0024 26.4 4.7 40 144-183 11-57 (191)
163 2m0f_A Zinc finger and BTB dom 27.2 26 0.00091 17.9 1.4 10 253-262 3-12 (29)
164 2i5o_A DNA polymerase ETA; zin 27.2 28 0.00096 21.7 1.6 12 251-262 8-19 (39)
165 2ytj_A Zinc finger protein 484 27.2 43 0.0015 19.7 2.5 13 251-263 11-23 (46)
166 3u5c_b RP61, YS20, 40S ribosom 26.9 24 0.00084 25.7 1.4 27 254-280 36-67 (82)
167 4a17_Y RPL37A, 60S ribosomal p 26.5 15 0.0005 28.1 0.2 32 252-283 36-71 (103)
168 2m0e_A Zinc finger and BTB dom 26.4 26 0.00089 17.9 1.2 14 267-280 3-16 (29)
169 2epw_A Zinc finger protein 268 26.4 45 0.0015 19.6 2.5 12 252-263 12-23 (46)
170 2m0d_A Zinc finger and BTB dom 26.3 29 0.00099 17.8 1.4 11 252-262 3-13 (30)
171 1rik_A E6APC1 peptide; E6-bind 26.3 28 0.00095 17.9 1.3 10 253-262 3-12 (29)
172 1x4v_A Hypothetical protein LO 26.2 36 0.0012 23.5 2.1 25 240-264 13-39 (63)
173 1x4w_A Hypothetical protein FL 26.1 20 0.00067 25.2 0.8 40 240-280 16-61 (67)
174 2kvg_A Zinc finger and BTB dom 26.1 27 0.00093 18.0 1.2 10 253-262 4-13 (27)
175 2kvf_A Zinc finger and BTB dom 26.1 29 0.00099 17.8 1.4 10 253-262 4-13 (28)
176 2ep2_A Zinc finger protein 484 26.0 45 0.0015 19.7 2.4 13 251-263 11-23 (46)
177 2emf_A Zinc finger protein 484 26.0 47 0.0016 19.6 2.5 13 251-263 11-23 (46)
178 2ea6_A Ring finger protein 4; 25.9 20 0.00068 23.8 0.7 12 266-277 56-67 (69)
179 2eml_A Zinc finger protein 28 25.8 47 0.0016 19.6 2.5 13 251-263 11-23 (46)
180 2yu8_A Zinc finger protein 347 25.7 47 0.0016 19.5 2.5 13 251-263 11-23 (46)
181 2en8_A Zinc finger protein 224 25.4 48 0.0016 19.4 2.5 12 252-263 12-23 (46)
182 2emy_A Zinc finger protein 268 25.2 50 0.0017 19.4 2.5 13 251-263 11-23 (46)
183 2eod_A TNF receptor-associated 25.1 29 0.001 22.6 1.5 30 251-280 9-51 (66)
184 1bi6_H Bromelain inhibitor VI; 25.0 23 0.0008 21.5 0.8 21 260-280 9-29 (41)
185 1rmd_A RAG1; V(D)J recombinati 25.0 30 0.001 25.9 1.7 15 266-280 58-72 (116)
186 2em5_A ZFP-95, zinc finger pro 25.0 50 0.0017 19.5 2.5 13 251-263 11-23 (46)
187 1wys_A Riken cDNA 2310008M20 p 24.8 42 0.0015 24.0 2.3 26 240-265 15-42 (75)
188 2eme_A Zinc finger protein 473 24.8 51 0.0017 19.3 2.5 13 251-263 11-23 (46)
189 2em9_A Zinc finger protein 224 24.7 50 0.0017 19.4 2.5 13 251-263 11-23 (46)
190 3iz5_m 60S ribosomal protein L 24.5 14 0.00048 27.6 -0.3 32 252-283 36-71 (92)
191 1wgm_A Ubiquitin conjugation f 24.5 28 0.00094 25.8 1.4 17 266-282 57-73 (98)
192 3j21_i 50S ribosomal protein L 24.5 11 0.00038 27.6 -0.8 32 252-283 35-70 (83)
193 1wfe_A Riken cDNA 2310008M20 p 24.5 33 0.0011 25.1 1.8 25 240-264 26-52 (86)
194 2emp_A Zinc finger protein 347 24.2 53 0.0018 19.3 2.5 13 251-263 11-23 (46)
195 2eoo_A ZFP-95, zinc finger pro 24.2 51 0.0017 19.4 2.5 13 251-263 11-23 (46)
196 2ene_A Zinc finger protein 347 24.2 52 0.0018 19.3 2.5 12 252-263 12-23 (46)
197 2el6_A Zinc finger protein 268 24.2 52 0.0018 19.4 2.5 12 252-263 12-23 (46)
198 2els_A Zinc finger protein 406 24.2 32 0.0011 19.0 1.4 13 251-263 8-20 (36)
199 2elx_A Zinc finger protein 406 24.1 32 0.0011 18.7 1.4 13 251-263 6-18 (35)
200 3gj5_B Nuclear pore complex pr 24.0 65 0.0022 19.4 2.7 26 250-275 5-30 (34)
201 2xzm_6 RPS27E; ribosome, trans 24.0 21 0.00073 26.0 0.6 27 254-280 34-65 (81)
202 2ysp_A Zinc finger protein 224 24.0 49 0.0017 19.5 2.3 13 251-263 11-23 (46)
203 3lrq_A E3 ubiquitin-protein li 23.7 18 0.00061 26.7 0.2 30 251-280 34-72 (100)
204 2em7_A Zinc finger protein 224 23.7 54 0.0018 19.3 2.5 12 252-263 12-23 (46)
205 3j20_Y 30S ribosomal protein S 23.6 42 0.0015 21.9 2.0 29 247-275 14-46 (50)
206 1znf_A 31ST zinc finger from X 23.6 28 0.00096 17.6 1.0 13 268-280 3-15 (27)
207 2ytg_A ZFP-95, zinc finger pro 23.6 54 0.0019 19.2 2.5 12 252-263 12-23 (46)
208 1ard_A Yeast transcription fac 23.5 23 0.00077 18.2 0.6 10 269-278 5-14 (29)
209 2eoe_A Zinc finger protein 347 23.4 40 0.0014 19.9 1.8 12 252-263 12-23 (46)
210 1wjp_A Zinc finger protein 295 23.4 19 0.00066 26.0 0.3 28 252-279 42-82 (107)
211 2ep0_A Zinc finger protein 28 23.4 56 0.0019 19.2 2.5 13 251-263 11-23 (46)
212 2enc_A Zinc finger protein 224 23.4 57 0.0019 19.1 2.6 12 252-263 12-23 (46)
213 2emm_A ZFP-95, zinc finger pro 23.3 56 0.0019 19.1 2.5 13 251-263 11-23 (46)
214 1srk_A Zinc finger protein ZFP 23.3 34 0.0012 18.7 1.4 12 252-263 7-18 (35)
215 2ytn_A Zinc finger protein 347 23.2 38 0.0013 20.0 1.7 12 252-263 12-23 (46)
216 2ayj_A 50S ribosomal protein L 23.1 75 0.0026 21.4 3.1 25 251-275 18-42 (56)
217 3u7r_A NADPH-dependent FMN red 22.9 1.1E+02 0.0037 25.3 5.0 40 144-183 2-41 (190)
218 2con_A RUH-035 protein, NIN on 22.9 66 0.0023 23.2 3.1 29 247-275 10-39 (79)
219 2em8_A Zinc finger protein 224 22.8 57 0.002 19.2 2.5 13 251-263 11-23 (46)
220 2elt_A Zinc finger protein 406 22.8 34 0.0012 18.8 1.3 13 251-263 8-20 (36)
221 2ytd_A Zinc finger protein 473 22.7 57 0.002 19.1 2.5 13 251-263 11-23 (46)
222 2i13_A AART; DNA binding, zinc 22.6 38 0.0013 27.1 2.0 30 251-280 132-175 (190)
223 2e72_A POGO transposable eleme 22.5 22 0.00075 23.3 0.4 14 251-264 11-24 (49)
224 2en1_A Zinc finger protein 224 22.5 55 0.0019 19.2 2.4 13 251-263 11-23 (46)
225 3izc_m 60S ribosomal protein R 22.3 15 0.00051 27.5 -0.5 32 252-283 36-71 (92)
226 2elv_A Zinc finger protein 406 22.1 37 0.0013 18.7 1.4 13 251-263 8-20 (36)
227 1q1s_A Large T antigen; import 21.9 27 0.00093 19.7 0.6 9 289-297 17-25 (26)
228 2yso_A ZFP-95, zinc finger pro 21.8 62 0.0021 19.0 2.5 12 252-263 12-23 (46)
229 1paa_A Yeast transcription fac 21.8 36 0.0012 17.6 1.2 13 268-280 4-16 (30)
230 1klr_A Zinc finger Y-chromosom 21.7 37 0.0013 17.4 1.2 13 268-280 4-16 (30)
231 2en6_A Zinc finger protein 268 21.6 61 0.0021 19.0 2.4 13 251-263 11-23 (46)
232 2jne_A Hypothetical protein YF 21.5 31 0.001 26.1 1.0 33 244-277 38-72 (101)
233 2elq_A Zinc finger protein 406 21.4 38 0.0013 18.7 1.3 13 251-263 8-20 (36)
234 2lvu_A Zinc finger and BTB dom 26.5 20 0.0007 18.2 0.0 12 269-280 5-16 (26)
235 2elp_A Zinc finger protein 406 20.9 39 0.0013 18.8 1.3 13 251-263 8-20 (37)
236 2ghf_A ZHX1, zinc fingers and 20.9 49 0.0017 24.5 2.2 32 249-280 15-64 (102)
237 2eop_A Zinc finger protein 268 20.7 46 0.0016 19.5 1.7 12 252-263 12-23 (46)
238 3ga8_A HTH-type transcriptiona 20.6 37 0.0013 23.9 1.3 13 251-263 35-47 (78)
239 3v2d_5 50S ribosomal protein L 20.6 56 0.0019 22.2 2.2 22 253-275 31-52 (60)
240 2d9k_A FLN29 gene product; zin 20.4 33 0.0011 23.6 1.0 30 251-280 16-57 (75)
241 3q7r_A Transcriptional regulat 20.4 1.6E+02 0.0055 22.5 4.8 40 7-46 67-117 (121)
242 2emx_A Zinc finger protein 268 20.2 68 0.0023 18.5 2.4 12 252-263 10-21 (44)
243 2elo_A Zinc finger protein 406 20.1 33 0.0011 19.1 0.8 13 251-263 8-20 (37)
244 2emk_A Zinc finger protein 28 20.0 48 0.0016 19.6 1.7 12 252-263 12-23 (46)
No 1
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.49 E-value=1.6e-12 Score=112.91 Aligned_cols=171 Identities=16% Similarity=0.120 Sum_probs=125.6
Q ss_pred CeEEEEEeCCcccccc--CCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHH
Q 022374 14 SLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (298)
Q Consensus 14 s~L~iIlD~s~~~w~~--~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~ 91 (298)
..++++||+|..|... .|+|+....+.+..|+++|+.++|..++|+|+...+.++++.|.+.+. +
T Consensus 3 e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~~plT~d~-------------~ 69 (192)
T 2x5n_A 3 EATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDY-------------G 69 (192)
T ss_dssp EEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEEEEEESCH-------------H
T ss_pred eEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEecCCCCCH-------------H
Confidence 4689999999999877 799999999999999999999999999999999876789998887543 2
Q ss_pred HHHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhhhHHHHHHHHHH
Q 022374 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ 171 (298)
Q Consensus 92 ~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qyi~lmN~ifaAq 171 (298)
.+...|. .-. . .+.+.+..||.+|...+.+.. ......||+|+..++. ..+..++...+..++
T Consensus 70 ~i~~~L~----~l~---~------~g~t~l~~aL~~A~~~l~~~~---~~~~~~riiil~~~~~-~~~~~~~~~~a~~lk 132 (192)
T 2x5n_A 70 KFLSAMH----DLP---V------RGNAKFGDGIQIAQLALKHRE---NKIQRQRIVAFVGSPI-VEDEKNLIRLAKRMK 132 (192)
T ss_dssp HHHHHHT----TCC---C------CSCCCHHHHHHHHHHHHHTCS---CTTSEEEEEEEECSCC-SSCHHHHHHHHHHHH
T ss_pred HHHHHHH----cCC---C------CCCchHHHHHHHHHHHHHhcc---ccCCCceEEEEEECCC-CCCchhHHHHHHHHH
Confidence 2344443 211 1 246899999999988776531 1234557777765532 334456778999999
Q ss_pred cCCeeEEEEEcCCCC--hHHHHHHHhhcC----CeeeeeCCcch-HHHHHH
Q 022374 172 RSMVPIDSCYLGAQN--SAFLQQASYITG----GVHHKPQQLDG-LFQYLL 215 (298)
Q Consensus 172 k~~I~Idv~~L~~~e--~~~LqQa~~~T~----G~Y~~~~~~~~-L~q~Ll 215 (298)
+.+|+|+++++|..+ .. |+++++.+| +.|..+..... |.+.|+
T Consensus 133 ~~gi~v~~Ig~G~~~~~~~-l~~la~~~n~~~~s~~~~~~~~~~~l~d~~~ 182 (192)
T 2x5n_A 133 KNNVAIDIIHIGELQNESA-LQHFIDAANSSDSCHLVSIPPSPQLLSDLVN 182 (192)
T ss_dssp HTTEEEEEEEESCC---CH-HHHHHHHHCSTTCCEEEEECCCSSCHHHHHH
T ss_pred HCCCEEEEEEeCCCCccHH-HHHHHHhccCCCceEEEEecCcchhHHHHHh
Confidence 999999999998442 25 999999976 45665554443 334433
No 2
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.43 E-value=3.7e-12 Score=116.08 Aligned_cols=171 Identities=14% Similarity=0.129 Sum_probs=129.8
Q ss_pred EEEEEeCCcccccc--CCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHHH
Q 022374 16 VVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATL 93 (298)
Q Consensus 16 L~iIlD~s~~~w~~--~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~~i 93 (298)
.+|+||.|..|... .|+||....+++..|+++++.+||.++|+||+.....++++.|.+.+. ..+
T Consensus 6 tViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl~plT~D~-------------~~i 72 (268)
T 4b4t_W 6 TVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEF-------------GKI 72 (268)
T ss_dssp EEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEEEEEESCH-------------HHH
T ss_pred EEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceeccCCcchH-------------HHH
Confidence 68999999999876 799999999999999999999999999999999877777777765433 234
Q ss_pred HHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhhhHHHHHHHHHHcC
Q 022374 94 LQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRS 173 (298)
Q Consensus 94 ~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qyi~lmN~ifaAqk~ 173 (298)
+..|..+ .. .+.+.+..||.+|...+.+.. ....+.||+++.+|+.. .+...+...+..++|.
T Consensus 73 l~aL~~l-------~~------~G~T~l~~gL~~A~~aLk~~~---~k~~~~rIIlf~ds~~~-~~~~~l~~lak~lkk~ 135 (268)
T 4b4t_W 73 LAGLHDT-------QI------EGKLHMATALQIAQLTLKHRQ---NKVQHQRIVAFVCSPIS-DSRDELIRLAKTLKKN 135 (268)
T ss_dssp HHHHTTC-------CC------CSCCCHHHHHHHHHHHHHTCS---CTTSEEEEEEEECSCCS-SCHHHHHHHHHHHHHH
T ss_pred HHHhhhc-------Cc------CCCCChHHHHHHHHHHHHhcc---cCCCceEEEEEECCCCC-CCHHHHHHHHHHHHHc
Confidence 4444322 11 367899999999998887652 34567788888888533 3455778899999999
Q ss_pred CeeEEEEEcCCC--ChHHHHHHHhhcCCe-----eeeeCCc--chHHHHHHH
Q 022374 174 MVPIDSCYLGAQ--NSAFLQQASYITGGV-----HHKPQQL--DGLFQYLLT 216 (298)
Q Consensus 174 ~I~Idv~~L~~~--e~~~LqQa~~~T~G~-----Y~~~~~~--~~L~q~Ll~ 216 (298)
||+||||.+|.. ....|++.++..||. |++..-+ .-|.+.|++
T Consensus 136 gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v~~g~~~lsd~l~~ 187 (268)
T 4b4t_W 136 NVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTPGPRLLYENIAS 187 (268)
T ss_dssp TEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEECCCSSCHHHHHHT
T ss_pred CCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEeCCCCccHHHHHhc
Confidence 999999999842 456999999999873 4443222 235565654
No 3
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=4.1e-10 Score=97.60 Aligned_cols=173 Identities=10% Similarity=0.047 Sum_probs=116.1
Q ss_pred CCCCCCeEEEEEeCCcccccc--CCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCc
Q 022374 9 YSDDVSLVVVLLDTNPFFWSS--SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRM 86 (298)
Q Consensus 9 ~~~~~s~L~iIlD~s~~~w~~--~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~ 86 (298)
....+-.+++|||.|..|... .|.++..+-+.+..|++. -+..+++||... +.++.++|...+.
T Consensus 7 ~~~~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~----~~~~~v~lv~F~-~~~~~~~~~~~~~--------- 72 (218)
T 3ibs_A 7 VKRKGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDE----LDNDKVGMIVFA-GDAFTQLPITSDY--------- 72 (218)
T ss_dssp ---CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHT----CSSCEEEEEEES-SSEEEEEEEESCH---------
T ss_pred cccCCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHh----CCCCeEEEEEEC-CCceEeCCCCCCH---------
Confidence 445567899999999999876 577888777666666654 457899999887 4588888865432
Q ss_pred hhHHHHHHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhhhHHHHH
Q 022374 87 PSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNA 166 (298)
Q Consensus 87 ~~~~~~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qyi~lmN~ 166 (298)
+.+.+.|..+ ... . . ..+.+.+..||..|+..+.+. ....+.|++|+-..+... .+...
T Consensus 73 ----~~~~~~l~~l-~~~--~-~-----~~g~T~l~~al~~a~~~l~~~-----~~~~~~ivllTDG~~~~~---~~~~~ 131 (218)
T 3ibs_A 73 ----ISAKMFLESI-SPS--L-I-----SKQGTAIGEAINLATRSFTPQ-----EGVGRAIIVITDGENHEG---GAVEA 131 (218)
T ss_dssp ----HHHHHHHHTC-CGG--G-C-----CSCSCCHHHHHHHHHTTSCSC-----SSCCEEEEEEECCTTCCS---CHHHH
T ss_pred ----HHHHHHHHhc-Ccc--c-C-----CCCCCcHHHHHHHHHHHHhhC-----CCCCcEEEEEcCCCCCCC---cHHHH
Confidence 1122333222 110 0 0 025678899998888766532 244556666662222222 35577
Q ss_pred HHHHHcCCeeEEEEEcCC--------------------------CChHHHHHHHhhcCCeeeeeCCcchHHHHHHH
Q 022374 167 IFSAQRSMVPIDSCYLGA--------------------------QNSAFLQQASYITGGVHHKPQQLDGLFQYLLT 216 (298)
Q Consensus 167 ifaAqk~~I~Idv~~L~~--------------------------~e~~~LqQa~~~T~G~Y~~~~~~~~L~q~Ll~ 216 (298)
+..+++.+|+|.++++|. .+...|+++|+.|||.|+.+.+....++-++.
T Consensus 132 ~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~~~~~~~~~~~ 207 (218)
T 3ibs_A 132 AKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDNSNSAQKAISQ 207 (218)
T ss_dssp HHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECSSSHHHHHHHH
T ss_pred HHHHHhcCCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCCChHHHHHHHH
Confidence 888999999999999974 24679999999999999999985555554443
No 4
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.01 E-value=2.1e-08 Score=84.23 Aligned_cols=170 Identities=10% Similarity=0.012 Sum_probs=113.9
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022374 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (298)
Q Consensus 13 ~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (298)
+--++++||.|..|.... ...++.+..++..++. +..+++||... +.++.++|...+. +.
T Consensus 6 ~~dvv~vlD~SgSM~~~~----~~~~~~~~~~~~~~~~--~~~~v~lv~f~-~~~~~~~~~~~~~-------------~~ 65 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANNW----IEIYNFVQQLAERFVS--PEMRLSFIVFS-SQATIILPLTGDR-------------GK 65 (182)
T ss_dssp CEEEEEEEECSGGGGGGH----HHHHHHHHHHHHHCCC--TTEEEEEEEES-SSEEEEEEEECCH-------------HH
T ss_pred ceeEEEEEECCCCcccCH----HHHHHHHHHHHHHhcC--CCceEEEEEeC-CCceEEECCCCCH-------------HH
Confidence 457899999999997642 2244555666666643 78999999876 5677788766322 12
Q ss_pred HHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhhhHHHHHHHHHHc
Q 022374 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172 (298)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qyi~lmN~ifaAqk 172 (298)
+.+.+..+-... . .+.+.+..||..|+..+.+.. .....+.|++|+-..+.....-.+...+..+++
T Consensus 66 ~~~~l~~l~~~~----~------~g~T~~~~al~~a~~~l~~~~---~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~ 132 (182)
T 1shu_X 66 ISKGLEDLKRVS----P------VGETYIHEGLKLANEQIQKAG---GLKTSSIIIALTDGKLDGLVPSYAEKEAKISRS 132 (182)
T ss_dssp HHHHHHHHHTCC----C------CSCCCHHHHHHHHHHHHHHHT---GGGSCEEEEEEECCCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCC----C------CCCchHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCcCCCCchhHHHHHHHHHh
Confidence 334443332111 1 246789999999999887642 123345555565222222222234567788899
Q ss_pred CCeeEEEEEcCCCChHHHHHHHhhcCCeeeeeCCcchHHHHHH
Q 022374 173 SMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLL 215 (298)
Q Consensus 173 ~~I~Idv~~L~~~e~~~LqQa~~~T~G~Y~~~~~~~~L~q~Ll 215 (298)
.+|+|.++++|..+...|+++|..|+|.|....+.+.|.+.+-
T Consensus 133 ~~i~i~~igvg~~~~~~L~~ia~~~~~~~~~~~~~~~L~~~~~ 175 (182)
T 1shu_X 133 LGASVYCVGVLDFEQAQLERIADSKEQVFPVKGGFQALKGIIN 175 (182)
T ss_dssp TTCEEEEEECSSCCHHHHHHHSSSGGGEEESSSTTHHHHHHHH
T ss_pred CCCEEEEEeCCcCCHHHHHHHhCCCCceEEccCCHHHHHHHHH
Confidence 9999999999877899999999999999998877777666543
No 5
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.81 E-value=4.1e-08 Score=84.92 Aligned_cols=183 Identities=8% Similarity=0.060 Sum_probs=109.2
Q ss_pred CCCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHH
Q 022374 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (298)
Q Consensus 12 ~~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~ 91 (298)
.+--+++|||.|..|... .+..+.+.+..|++.+-..++..+++||... +.++.+++...... .+ .+
T Consensus 14 ~~~div~vlD~SgSM~~~---~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~-~~~~~~~~~~~~~~--------~~-~~ 80 (223)
T 1q0p_A 14 GSMNIYLVLDGSDSIGAS---NFTGAKKSLVNLIEKVASYGVKPRYGLVTYA-TYPKIWVKVSEADS--------SN-AD 80 (223)
T ss_dssp -CEEEEEEEECSTTTCHH---HHHHHHHHHHHHHHHHHTTTCCCEEEEEEES-SSEEEEECTTSGGG--------GC-HH
T ss_pred CceeEEEEEeCCCCCchH---HHHHHHHHHHHHHHHHhcCCCCceEEEEEec-CccceeeccccCCC--------CC-HH
Confidence 456789999999999764 3777777778888877777777899999877 45677776543211 00 01
Q ss_pred HHHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCC--CCCcE-EEEEE-cCCCCChhhhHHHHHH
Q 022374 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLL--HPQPR-ILCLQ-GSPDGPEQYVAIMNAI 167 (298)
Q Consensus 92 ~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~--~~~~r-ILii~-~S~d~~~qyi~lmN~i 167 (298)
.+.+.|..+- .... ...+.+.+..||..|+..+.......+. ...++ |++|+ |-+..+.++......+
T Consensus 81 ~~~~~i~~l~----~~~~----~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~ 152 (223)
T 1q0p_A 81 WVTKQLNEIN----YEDH----KLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEI 152 (223)
T ss_dssp HHHHHHHTCC----TTSC----SCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSSCTHHHHHHH
T ss_pred HHHHHHHhcc----cccc----cCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCCChHHHHHHH
Confidence 2344443221 1000 0125678999999998877643110000 12344 44454 2222222344444544
Q ss_pred H----------HHHcCCeeEEEEEcCC-CChHHHHHHHhhcCC--eeeeeCCcchHHHHHH
Q 022374 168 F----------SAQRSMVPIDSCYLGA-QNSAFLQQASYITGG--VHHKPQQLDGLFQYLL 215 (298)
Q Consensus 168 f----------aAqk~~I~Idv~~L~~-~e~~~LqQa~~~T~G--~Y~~~~~~~~L~q~Ll 215 (298)
. .+++.+|+|.++++|. .+...|+++|..|+| .|+.+.+.+.|.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~i~i~~igvG~~~~~~~L~~iA~~~~G~~~~~~~~~~~~L~~~~~ 213 (223)
T 1q0p_A 153 RDLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFY 213 (223)
T ss_dssp HHHTTCSCBTTBCCGGGEEEEEEECSSCCCHHHHHHHSCCCTTCCCEEETTC---------
T ss_pred HHHHhhhhhhhhcccCCcEEEEEEecCcCCHHHHHHHhcCCCCCceEEEcCCHHHHHHHHH
Confidence 3 3467889999999974 367899999999999 8999888877766544
No 6
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.75 E-value=3.4e-07 Score=89.41 Aligned_cols=175 Identities=11% Similarity=0.025 Sum_probs=115.0
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022374 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (298)
Q Consensus 13 ~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (298)
+--+++|||.|..|+.. +.++..+-+.+..|++. +.+..+++||+.. +.++.++|....... +.. .
T Consensus 77 ~~dvv~VLD~SGSM~~~-~~rl~~ak~a~~~ll~~---L~~~drv~lV~Fs-~~a~~~~p~t~~l~~------~~~---~ 142 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYP-RTKMMAAKEATKVAIDT---LTDGAFFAVVAGT-EGARVVYPTGGQLLR------ADY---Q 142 (464)
T ss_dssp CEEEEEEEECCGGGGTT-THHHHHHHHHHHHHHHH---SCTTCEEEEEEES-SSEEEEESSSSSCEE------CSH---H
T ss_pred CceEEEEEEcCcccCCC-CchHHHHHHHHHHHHHh---CCCCCEEEEEEEc-CceEEEecCCccccc------CCH---H
Confidence 44699999999999732 45788877777777765 3477899998876 678889987532100 000 0
Q ss_pred HHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhhhHHHHHHHHHHc
Q 022374 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172 (298)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qyi~lmN~ifaAqk 172 (298)
-.+.+.+.+..-.. .+.+.+..||..|+..+.+. +...+.|++|+=..+....+..+.+.+ .+.+
T Consensus 143 ~~~~l~~~I~~L~~---------~GgT~l~~aL~~A~~~l~~~-----~~~~~~IILLTDG~~~~~~~~~l~~~~-~a~~ 207 (464)
T 4fx5_A 143 SRAAAKEAVGRLHA---------NGGTAMGRWLAQAGRIFDTA-----PSAIKHAILLTDGKDESETPADLARAI-QSSI 207 (464)
T ss_dssp HHHHHHHHHHTCCC---------CSCCCHHHHHHHHHHHHTTC-----TTSEEEEEEEESSCCTTSCHHHHHHHH-HHHT
T ss_pred HHHHHHHHHHcCCC---------CCCCcHHHHHHHHHHHHhcC-----CCCCCEEEEEcCCCCCCCChHHHHHHH-HHhc
Confidence 12223333322111 24678999999999887752 233456666663222223333444444 3567
Q ss_pred CCeeEEEEEcCC-CChHHHHHHHhhcCCeeeeeCCcchHHHHHHH
Q 022374 173 SMVPIDSCYLGA-QNSAFLQQASYITGGVHHKPQQLDGLFQYLLT 216 (298)
Q Consensus 173 ~~I~Idv~~L~~-~e~~~LqQa~~~T~G~Y~~~~~~~~L~q~Ll~ 216 (298)
.+|+|.++++|. .+..+|+++|+.|||.|+.+.+.+.|.+.+..
T Consensus 208 ~~i~i~tiGiG~~~d~~~L~~IA~~tgG~~~~v~d~~~L~~~f~~ 252 (464)
T 4fx5_A 208 GNFTADCRGIGEDWEPKELRKIADALLGTVGIIRDPATLAEDFRE 252 (464)
T ss_dssp TTCEEEEEEESSSSCHHHHHHHHHHTTCCEEEESSGGGHHHHHHH
T ss_pred CCCeEEEEEeCCccCHHHHHHHHHhCCCEEEEcCCHHHHHHHHHH
Confidence 899999999983 36789999999999999999998876655543
No 7
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.69 E-value=3.8e-07 Score=76.59 Aligned_cols=170 Identities=10% Similarity=0.013 Sum_probs=111.0
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022374 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (298)
Q Consensus 13 ~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (298)
+--+++|||.|..|... +....+.+..++..+ .++..+++||... +.++.++|...+. +.
T Consensus 7 ~~div~vlD~SgSM~~~----~~~~~~~~~~~~~~~--~~~~~~v~lv~f~-~~~~~~~~l~~~~-------------~~ 66 (185)
T 3n2n_F 7 GFDLYFILDKSGSVLHH----WNEIYYFVEQLAHKF--ISPQLRMSFIVFS-TRGTTLMKLTEDR-------------EQ 66 (185)
T ss_dssp EEEEEEEEECSGGGGGG----HHHHHHHHHHHHHHC--CCTTEEEEEEEES-SSEEEEEEEECCH-------------HH
T ss_pred CeeEEEEEeCCCChhhh----HHHHHHHHHHHHHHh--CCCCcEEEEEEEe-cCceEEeccCCCH-------------HH
Confidence 44689999999999763 566667777777777 4578899999876 5678888876532 23
Q ss_pred HHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhh-hHHHHHHHHHH
Q 022374 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQY-VAIMNAIFSAQ 171 (298)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qy-i~lmN~ifaAq 171 (298)
+.+.+..+-... . .+.+.+..||..|+..+....+.. .. .++++|+..-....... .........++
T Consensus 67 ~~~~i~~l~~~~----~------~g~T~~~~al~~a~~~l~~~~~~~-~~-~~~~iillTDG~~~~~~~~~~~~~~~~~~ 134 (185)
T 3n2n_F 67 IRQGLEELQKVL----P------GGDTYMHEGFERASEQIYYENRQG-YR-TASVIIALTDGELHEDLFFYSEREANRSR 134 (185)
T ss_dssp HHHHHHHHHTCC----C------CSCCCHHHHHHHHHHHHHHHHTTC-BC-EEEEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhc----C------CCCccHHHHHHHHHHHHhhccccC-CC-CCcEEEEEcCCCCCCCcccchHHHHHHHH
Confidence 455554442111 0 246788999999998775432111 12 34444444222222222 13356888999
Q ss_pred cCCeeEEEEEcCCCChHHHHHHHhhcCCeeeeeCCcchHHHHH
Q 022374 172 RSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYL 214 (298)
Q Consensus 172 k~~I~Idv~~L~~~e~~~LqQa~~~T~G~Y~~~~~~~~L~q~L 214 (298)
+.+|+|-++++|..+...|+++|...++.|....+.+.|.+.+
T Consensus 135 ~~gi~i~~igvg~~~~~~L~~iA~~~~~~~~~~~~~~~L~~~~ 177 (185)
T 3n2n_F 135 DLGAIVYAVGVKDFNETQLARIADSKDHVFPVNDGFQALQGII 177 (185)
T ss_dssp HTTEEEEEEECSSCCHHHHTTTSSSGGGEEEHHHHHHHHHHHH
T ss_pred HCCCEEEEEEeccCCHHHHHHHhCCCCCeEEeccHHHHHHHHH
Confidence 9999999999997789999999987766666432255554443
No 8
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.67 E-value=1.3e-06 Score=74.01 Aligned_cols=169 Identities=19% Similarity=0.175 Sum_probs=104.7
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022374 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (298)
Q Consensus 13 ~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (298)
+--++++||.|..|... ++..+.+.+..|++.+-......+++||... +.++.++|.....+ . +.
T Consensus 5 ~~div~vlD~SgSm~~~---~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~-~~~~~~~~l~~~~~----------~-~~ 69 (189)
T 1atz_A 5 PLDVILLLDGSSSFPAS---YFDEMKSFAKAFISKANIGPRLTQVSVLQYG-SITTIDVPWNVVPE----------K-AH 69 (189)
T ss_dssp CEEEEEEEECSSSSCHH---HHHHHHHHHHHHHHHSCBSTTSEEEEEEEES-SSEEEEECTTCCCC----------H-HH
T ss_pred ceeEEEEEeCCCCCChh---hHHHHHHHHHHHHHhcCcCCCCeEEEEEEEC-CcceEEEecCCCCC----------H-HH
Confidence 44689999999998753 5665555555555553212334589999885 56788888753321 0 12
Q ss_pred HHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcE-EEEEEcCCCCChhhhHHHHHHHHHH
Q 022374 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPR-ILCLQGSPDGPEQYVAIMNAIFSAQ 171 (298)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~r-ILii~~S~d~~~qyi~lmN~ifaAq 171 (298)
+.+.+..+ ... .+.+.+..||..|+..+.....+ .....++ ++||+... ... ++...+..++
T Consensus 70 ~~~~i~~l----~~~--------~g~T~~~~aL~~a~~~l~~~~~g-~r~~~~~~vivltdg~-~~~---~~~~~~~~~~ 132 (189)
T 1atz_A 70 LLSLVDVM----QRE--------GGPSQIGDALGFAVRYLTSEMHG-ARPGASKAVVILVTDV-SVD---SVDAAADAAR 132 (189)
T ss_dssp HHHHHHTC----CCC--------CCCCCHHHHHHHHHHHHHSCCTT-CCTTSEEEEEEEECSC-CSS---CCHHHHHHHH
T ss_pred HHHHHHhC----cCC--------CCcchHHHHHHHHHHHHhccccC-CCCCCCcEEEEEeCCC-CCc---hHHHHHHHHH
Confidence 33333221 110 24678899999998877642111 1122345 45554221 111 2356778889
Q ss_pred cCCeeEEEEEcCC-CChHHHHHHHhhcCCeee-eeCCcchHHHH
Q 022374 172 RSMVPIDSCYLGA-QNSAFLQQASYITGGVHH-KPQQLDGLFQY 213 (298)
Q Consensus 172 k~~I~Idv~~L~~-~e~~~LqQa~~~T~G~Y~-~~~~~~~L~q~ 213 (298)
+.+|+|.++++|. .+...|+++|..++|.|. .+.+.+.|-.+
T Consensus 133 ~~gi~v~~igvG~~~~~~~L~~iA~~~~~~~~~~~~~~~~~~~l 176 (189)
T 1atz_A 133 SNRVTVFPIGIGDRYDAAQLRILAGPAGDSNVVKLQRIEDLPTM 176 (189)
T ss_dssp HTTEEEEEEEESSSSCHHHHHHHTGGGGGGGCEEESSTTHHHHH
T ss_pred HCCCEEEEEEcCCcCCHHHHHHHHCCCcccCEEEecChhhHHHH
Confidence 9999999999985 467899999999988654 45555555444
No 9
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.65 E-value=6.3e-07 Score=78.18 Aligned_cols=167 Identities=13% Similarity=0.105 Sum_probs=103.6
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHc----CCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchh
Q 022374 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILT----LNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPS 88 (298)
Q Consensus 13 ~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~----~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~ 88 (298)
+--+++|||.|..|.. +. .+..|+..++. ..+..+++||... +.++.++|......
T Consensus 22 ~~div~vlD~SgSM~~-----~~----~~k~~~~~~~~~l~~~~~~~rv~lv~F~-~~~~~~~~l~~~~~---------- 81 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIYP-----WE----SVIAFLNDLLKRMDIGPKQTQVGIVQYG-ENVTHEFNLNKYSS---------- 81 (223)
T ss_dssp CEEEEEEEECSTTCCC-----HH----HHHHHHHHHHTTSCCSTTSCCEEEEEES-SSEEEEECTTTCCS----------
T ss_pred cceEEEEEECCCChhh-----HH----HHHHHHHHHHHhcccCCCCeEEEEEEeC-CCccEEEecCCCCC----------
Confidence 4569999999999872 44 44555555554 3578899999986 56788888743221
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCcccc-ccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhhhHHHHHH
Q 022374 89 LCATLLQNLEEFMNKDEQLGKQEPEGRIA-CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAI 167 (298)
Q Consensus 89 ~~~~i~~~L~~l~~~~~~~~~~~~~~~~~-~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qyi~lmN~i 167 (298)
. ..+.++|..+ ... .+ .+.+..||..|+..+...... .....++++|+..-...... ..+...+
T Consensus 82 ~-~~~~~~i~~l----~~~--------gG~~T~~~~aL~~a~~~l~~~~~~-~~~~~~~~iillTDG~~~~~-~~~~~~~ 146 (223)
T 2b2x_A 82 T-EEVLVAANKI----VQR--------GGRQTMTALGIDTARKEAFTEARG-ARRGVKKVMVIVTDGESHDN-YRLKQVI 146 (223)
T ss_dssp H-HHHHHHHTTC----CCC--------CCSSCCHHHHHHHHHHTTSSGGGT-CCTTSEEEEEEEESSCCTTG-GGHHHHH
T ss_pred H-HHHHHHHHhh----hcc--------CCCCccHHHHHHHHHHHhcCcccC-CCCCCCeEEEEEcCCCCCCC-ccHHHHH
Confidence 0 1233333221 000 12 367888898888754321111 11234455544422111111 2455678
Q ss_pred HHHHcCCeeEEEEEcCCC-C---------hHHHHHHHhh-cCCeeeeeCCcchHHHHH
Q 022374 168 FSAQRSMVPIDSCYLGAQ-N---------SAFLQQASYI-TGGVHHKPQQLDGLFQYL 214 (298)
Q Consensus 168 faAqk~~I~Idv~~L~~~-e---------~~~LqQa~~~-T~G~Y~~~~~~~~L~q~L 214 (298)
..+++.+|+|.++++|.. + ...|+++|.. |+|.|+.+.+.+.|-+.+
T Consensus 147 ~~~~~~gi~v~~igvG~~~~~~~~~~~~~~~~L~~iA~~p~~g~~~~~~~~~~L~~i~ 204 (223)
T 2b2x_A 147 QDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTIV 204 (223)
T ss_dssp HHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTTSCSSGGGTEEEESSTTGGGGGH
T ss_pred HHHHHCCCEEEEEEecCccccccccchhHHHHHHHHhCCCchhcEEEeCCHHHHHHHH
Confidence 888999999999999732 1 3799999999 999999998877665543
No 10
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.63 E-value=2.5e-06 Score=73.32 Aligned_cols=174 Identities=13% Similarity=0.077 Sum_probs=103.9
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022374 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (298)
Q Consensus 13 ~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (298)
+--+++|||.|..|-.. ++..+.+.+..|++.+-......+++||... +.++..+|.....+ . +.
T Consensus 13 ~~divfvlD~SgSm~~~---~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs-~~~~~~~~l~~~~~----------~-~~ 77 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEA---EFEVLKAFVVDMMERLRVSQKWVRVAVVEYH-DGSHAYIGLKDRKR----------P-SE 77 (202)
T ss_dssp CEEEEEEEECBTTSCHH---HHHHHHHHHHHHHHTBCBSTTSEEEEEEEES-SSEEEEECTTCCCC----------H-HH
T ss_pred cccEEEEEECCCCCCHH---HHHHHHHHHHHHHHhcccCCCceEEEEEEEC-CCceEEEecCCCCC----------H-HH
Confidence 45799999999988543 4555544444455433222345699999876 55788888764321 0 12
Q ss_pred HHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhhhHHHHHHHHHHc
Q 022374 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172 (298)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qyi~lmN~ifaAqk 172 (298)
+.+.+..+ ...+ .+.+.+..||..|+..+.+ +.......+.|++|+-..+.....-.+...+..+++
T Consensus 78 ~~~~i~~l----~~~g-------g~~T~~~~aL~~a~~~~~~--~~~r~~~~~~iillTDG~~~~~~~~~~~~~a~~l~~ 144 (202)
T 1ijb_A 78 LRRIASQV----KYAG-------SQVASTSEVLKYTLFQIFS--KIDRPEASRIALLLMASQEPQRMSRNFVRYVQGLKK 144 (202)
T ss_dssp HHHHHHTC----CCCC-------BSCCCHHHHHHHHHHHTSS--SCSCTTSEEEEEEEECCCCCGGGCTTHHHHHHHHHH
T ss_pred HHHHHHhC----cCCC-------CCcCcHHHHHHHHHHHHhc--cCCCCCCCeEEEEEccCCCCccchHHHHHHHHHHHH
Confidence 33333222 1100 1136778888877654321 111122333444445222111111245677888899
Q ss_pred CCeeEEEEEcCC-CChHHHHHHHhh-cCCeeeeeCCcchHHHHH
Q 022374 173 SMVPIDSCYLGA-QNSAFLQQASYI-TGGVHHKPQQLDGLFQYL 214 (298)
Q Consensus 173 ~~I~Idv~~L~~-~e~~~LqQa~~~-T~G~Y~~~~~~~~L~q~L 214 (298)
.+|+|-++++|. .+...|+++|.. ++|.++.+.+.+.|.+.+
T Consensus 145 ~gi~i~~igvG~~~~~~~L~~iA~~~~~~~~~~~~~~~~L~~~~ 188 (202)
T 1ijb_A 145 KKVIVIPVGIGPHANLKQIRLIEKQAPENKAFVLSSVDELEQQR 188 (202)
T ss_dssp TTEEEEEEEESTTSCHHHHHHHHHHCTTCCCEEESSGGGHHHHH
T ss_pred CCCEEEEEecCCcCCHHHHHHHhCCCCcccEEEeCCHHHHHHHH
Confidence 999999999984 477899999986 578888888887776654
No 11
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.59 E-value=1.6e-07 Score=79.96 Aligned_cols=171 Identities=11% Similarity=0.060 Sum_probs=103.8
Q ss_pred CCCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHH
Q 022374 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (298)
Q Consensus 12 ~~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~ 91 (298)
.+--+++|||.|..|... .+....+.+..|+..+. .+..+++||.... .++..+|....... +
T Consensus 8 ~~~div~vlD~SgSM~~~---~~~~~~~~~~~~~~~l~--~~~~~v~lv~f~~-~~~~~~~~~~~~~~-----------~ 70 (198)
T 1n3y_A 8 QEQDIVFLIDGSGSISSR---NFATMMNFVRAVISQFQ--RPSTQFSLMQFSN-KFQTHFTFEEFRRS-----------S 70 (198)
T ss_dssp CCEEEEEEEECCTTSCHH---HHHHHHHHHHHHHTTSC--TTTEEEEEEEESS-SEEEEECHHHHHHC-----------S
T ss_pred CCeeEEEEEECCCCCCHH---HHHHHHHHHHHHHHhcC--CCCcEEEEEEeCC-CccEEEecCccCCH-----------H
Confidence 345789999999999764 35555555566665544 7888999998874 46667765321000 0
Q ss_pred HHHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhhhHHHHHHHHHH
Q 022374 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ 171 (298)
Q Consensus 92 ~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qyi~lmN~ifaAq 171 (298)
.+.+.|..+ .. ..+.+.+..||..|+..+.+..........+.|++|+-.. ...+.......+..++
T Consensus 71 ~~~~~i~~l-------~~-----~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~-~~~~~~~~~~~~~~~~ 137 (198)
T 1n3y_A 71 NPLSLLASV-------HQ-----LQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGK-KEGDSLDYKDVIPMAD 137 (198)
T ss_dssp SGGGGGTTC-------CC-----CCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSC-CBSCSSCHHHHHHHHH
T ss_pred HHHHHHhcC-------cC-----CCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCC-CCCCcccHHHHHHHHH
Confidence 011112111 00 1246788999988885442221111122333444454221 1112233456778889
Q ss_pred cCCeeEEEEEcCCCC-----hHHHHHHHhhcCCee-eeeCCcchHHH
Q 022374 172 RSMVPIDSCYLGAQN-----SAFLQQASYITGGVH-HKPQQLDGLFQ 212 (298)
Q Consensus 172 k~~I~Idv~~L~~~e-----~~~LqQa~~~T~G~Y-~~~~~~~~L~q 212 (298)
+.+|+|.++++|... ...|+++|..|+|.| +.+.+.+.|.+
T Consensus 138 ~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~ 184 (198)
T 1n3y_A 138 AAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDALKD 184 (198)
T ss_dssp HTTCEEEEEEESGGGGSSTTHHHHHHHSCSSSGGGEEEESSGGGGGG
T ss_pred HCCCEEEEEEccccccccccHHHHHHHHcCCCcccEEEeCCHHHHHH
Confidence 999999999997432 589999999999998 77777665543
No 12
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.59 E-value=8.1e-07 Score=86.20 Aligned_cols=183 Identities=9% Similarity=0.088 Sum_probs=116.0
Q ss_pred eEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHHHH
Q 022374 15 LVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLL 94 (298)
Q Consensus 15 ~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~~i~ 94 (298)
-|++|||.|..|.. .++..+.+.+..|++.+-......+++||... +.++.+++...... .+ .+.+.
T Consensus 3 div~vlD~SgSM~~---~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~-~~~~~~~~~~~~~~--------~~-~~~~~ 69 (497)
T 1rrk_A 3 NIYLVLDGSDSIGA---SNFTGAKKVLVNLIEKVASYGVKPRYGLVTYA-TYPKIWVKVSEADS--------SN-ADWVT 69 (497)
T ss_dssp EEEEEEECSTTTCH---HHHHHHHHHHHHHHHHHHHTTCCCEEEEEEES-SSEEEEECTTSGGG--------GC-HHHHH
T ss_pred eEEEEEECCCCcch---hhHHHHHHHHHHHHHHhhccCCCceEEEEEec-CCceEeeccccccc--------cC-HHHHH
Confidence 48999999999976 36888888888889888777788899999987 56677775432210 00 12344
Q ss_pred HHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhh---cCCCCCCcEEEEEE-cCCCCChhhhHHHHHHHHH
Q 022374 95 QNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFR---SGLLHPQPRILCLQ-GSPDGPEQYVAIMNAIFSA 170 (298)
Q Consensus 95 ~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~---~~~~~~~~rILii~-~S~d~~~qyi~lmN~ifaA 170 (298)
+.|..+-..... ..+.+.+..||..|+..+..... .......+.|++|+ |-+..+.+.....+.+...
T Consensus 70 ~~l~~l~~~~~~--------~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~~~~~~ 141 (497)
T 1rrk_A 70 KQLNEINYEDHK--------LKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIRDL 141 (497)
T ss_dssp HHHHHCCGGGSC--------CTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSSCTHHHHHHHHHH
T ss_pred HHHHhCcCcccc--------ccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCCChhHHHHHHHHH
Confidence 555443211100 02467889999999887742211 00012333444455 2222222333333333222
Q ss_pred ----------HcCCeeEEEEEcCC-CChHHHHHHHhhcCC--eeeeeCCcchHHHHHHHhc
Q 022374 171 ----------QRSMVPIDSCYLGA-QNSAFLQQASYITGG--VHHKPQQLDGLFQYLLTIF 218 (298)
Q Consensus 171 ----------qk~~I~Idv~~L~~-~e~~~LqQa~~~T~G--~Y~~~~~~~~L~q~Ll~~~ 218 (298)
++.+|+|.++++|. .+...|+++|..|+| .|+.+.+.+.|.+.+...+
T Consensus 142 ~~~~~~~~~~~~~~i~v~~igvG~~~~~~~L~~iA~~~~g~~~~~~~~~~~~l~~~~~~~i 202 (497)
T 1rrk_A 142 LYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVCKVKDMECLEDVFYQMI 202 (497)
T ss_dssp TTCSSCC-CCCGGGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEEETTCHHHHHHHHHHHS
T ss_pred hhhhcccccchhcCeeEEEecCCCccCHHHHHHHhcCCCCcceEEEeCCHHHHhhhhhhcc
Confidence 33499999999974 477899999999999 9999998888877776433
No 13
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.54 E-value=4.2e-06 Score=71.54 Aligned_cols=171 Identities=11% Similarity=0.040 Sum_probs=102.5
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022374 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (298)
Q Consensus 13 ~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (298)
+--+++|||.|..|. .+..+.+.+..|++.+-.....-+++||... +.++.++|...... .+.
T Consensus 6 ~~div~vlD~SgSm~-----~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~-~~~~~~~~l~~~~~-----------~~~ 68 (200)
T 1v7p_C 6 LIDVVVVCDESNSIY-----PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYA-NNPRVVFNLNTYKT-----------KEE 68 (200)
T ss_dssp CEEEEEEEECCTTCC-----CHHHHHHHHHHHHHTSCBSTTSEEEEEEEES-SSEEEEECTTTCSS-----------HHH
T ss_pred cccEEEEEECCCCcc-----cHHHHHHHHHHHHHhcCCCCCceEEEEEEEC-CCceEEEeCCCcCC-----------HHH
Confidence 446899999999986 2444444444444433222357899999876 56788888873221 123
Q ss_pred HHHHHHHHHhhhhccCCCCCCcccc-ccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhhhHHHHHHHHHH
Q 022374 93 LLQNLEEFMNKDEQLGKQEPEGRIA-CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ 171 (298)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~-~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qyi~lmN~ifaAq 171 (298)
+.+.|..+. .. .+ .+.+..||..|+..+........+...+.|++|+-.. .. +...+...+..++
T Consensus 69 ~~~~i~~l~----~~--------~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~-~~-~~~~~~~~~~~~~ 134 (200)
T 1v7p_C 69 MIVATSQTS----QY--------GGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGE-SH-DGSMLKAVIDQCN 134 (200)
T ss_dssp HHHHHHHCC----CC--------CCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSC-CS-CGGGHHHHHHHHH
T ss_pred HHHHHHhhh----cc--------CCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCC-CC-CcccHHHHHHHHH
Confidence 444444321 00 12 4678888988887532211111122333344444221 11 2223456788899
Q ss_pred cCCeeEEEEEcCC------CC----hHHHHHHHhhcCCee-eeeCCcchHHHHH
Q 022374 172 RSMVPIDSCYLGA------QN----SAFLQQASYITGGVH-HKPQQLDGLFQYL 214 (298)
Q Consensus 172 k~~I~Idv~~L~~------~e----~~~LqQa~~~T~G~Y-~~~~~~~~L~q~L 214 (298)
+.+|+|.++.+|. .+ ...|+++|..|+|.| +.+.+.+.|.+.+
T Consensus 135 ~~gi~i~~igvg~~~~~~~~~~~~~~~~L~~iA~~~~g~~~~~~~~~~~l~~i~ 188 (200)
T 1v7p_C 135 HDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERYFFNVSDEAALLEKA 188 (200)
T ss_dssp HTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSSGGGHHHH
T ss_pred HCCCEEEEEEecccccccccchhhHHHHHHHHhCCccHhcEEEcCCHHHHHHHH
Confidence 9999999999941 12 456999999999987 5677777766654
No 14
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.54 E-value=1.8e-06 Score=84.11 Aligned_cols=187 Identities=13% Similarity=0.111 Sum_probs=119.7
Q ss_pred CCCCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHH
Q 022374 11 DDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLC 90 (298)
Q Consensus 11 ~~~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~ 90 (298)
..+--|++|||.|..|... .+..+-+.+..|++.+-...+..+++||+.. +.++.++|...... .+ .
T Consensus 7 ~~~~divfvlD~SgSM~~~---~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~-~~~~~~~~l~~~~~--------~~-~ 73 (509)
T 2odp_A 7 SGHLNLYLLLDASQSVSEN---DFLIFKESASLMVDRIFSFEINVSVAIITFA-SEPKVLMSVLNDNS--------RD-M 73 (509)
T ss_dssp SSEEEEEEEEECSTTSCHH---HHHHHHHHHHHHHHHHHTTCCCEEEEEEEES-SSEEEEECTTSGGG--------GC-H
T ss_pred CCCeeEEEEEeCCCccchh---hHHHHHHHHHHHHHHhhccCCCceEEEEEcc-CCCceeEeccCCCC--------CC-H
Confidence 4456799999999999754 5777777777777777666889999999986 67788888753210 00 0
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCC------CCCcEEEEEE-cCCCCChhhhHH
Q 022374 91 ATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLL------HPQPRILCLQ-GSPDGPEQYVAI 163 (298)
Q Consensus 91 ~~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~------~~~~rILii~-~S~d~~~qyi~l 163 (298)
+.+.+.|..+--.... ..+.+.+..||..|+..+......... ...+.|++|+ |-+....++...
T Consensus 74 ~~~~~~l~~l~~~~~~--------~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~ 145 (509)
T 2odp_A 74 TEVISSLENANYKDHE--------NGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGGSPKTA 145 (509)
T ss_dssp HHHHHHHHTCCGGGGT--------TCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSSCTHHH
T ss_pred HHHHHHHHhcccccCC--------CCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCCChhHH
Confidence 2244444333111100 014678999999999888543211110 1223444454 222222233333
Q ss_pred HHHHHH------HHcCCeeEEEEEcCC--CChHHHHHHHhhcCCe--eeeeCCcchHHHHHHHhc
Q 022374 164 MNAIFS------AQRSMVPIDSCYLGA--QNSAFLQQASYITGGV--HHKPQQLDGLFQYLLTIF 218 (298)
Q Consensus 164 mN~ifa------Aqk~~I~Idv~~L~~--~e~~~LqQa~~~T~G~--Y~~~~~~~~L~q~Ll~~~ 218 (298)
...+.. +++.+|+|.++++|. .+...|+++|..++|. |+.+.+.+.|.+++-..+
T Consensus 146 ~~~~~~~~~~~~~~~~~i~i~~iGvG~~~~~~~~L~~iA~~~~G~~~~~~~~~~~~l~~~~~~i~ 210 (509)
T 2odp_A 146 VDHIREILNINQKRNDYLDIYAIGVGKLDVDWRELNELGSKKDGERHAFILQDTKALHQVFEHML 210 (509)
T ss_dssp HHHHHHHTTCCSTTGGGEEEEEEEESSSCCCHHHHHHHSCCCTTCCCEEEESSHHHHHHHHHHHE
T ss_pred HHHHHHHhhccccccCceEEEEEEcCCCcccHHHHHhhccCCCCceeeEEecCHHHHHHHHHhhh
Confidence 333332 228899999999986 5789999999999998 888888888887775553
No 15
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.53 E-value=3.1e-06 Score=76.54 Aligned_cols=175 Identities=9% Similarity=0.047 Sum_probs=108.2
Q ss_pred CCeEEEEEeCCccccccCCccH-HHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHH
Q 022374 13 VSLVVVLLDTNPFFWSSSSLSF-SQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (298)
Q Consensus 13 ~s~L~iIlD~s~~~w~~~~~~l-~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~ 91 (298)
+--+++|||.|..|-.. .+ ..+.+.+..|++.+-......+++||... ..+..++|....... + .+
T Consensus 21 ~~div~vlD~SgSM~~~---~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs-~~~~~~~~l~~~~~~--------~-~~ 87 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRRH---NWVNHAVPLAMKLIQQLNLNDNAIHLYASVFS-NNAREIIRLHSDASK--------N-KE 87 (281)
T ss_dssp CEEEEEEEECCCCSSTH---HHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEE-TTEEEEEEECSSCSS--------C-HH
T ss_pred ceeEEEEEeCCCCcCHH---HHHHHHHHHHHHHHHHhccCCCCcEEEEEEcC-CCceEEEEccccCcc--------C-HH
Confidence 45699999999988653 23 33444444444433333336789999876 467777776654310 0 02
Q ss_pred HHHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhhhHHHHHHHHHH
Q 022374 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ 171 (298)
Q Consensus 92 ~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qyi~lmN~ifaAq 171 (298)
.+.+.|..+...... .+.+.+..||..|+..+... ... ...++++||.... .+.+...+...+..++
T Consensus 88 ~l~~~i~~l~~~~~~---------~G~T~~~~aL~~a~~~l~~~--~~r-~~~~~~iillTDG-~~~d~~~~~~~~~~l~ 154 (281)
T 4hqf_A 88 KALIIIKSLLSTNLP---------YGKTSLTDALLQVRKHLNDR--INR-ENANQLVVILTDG-IPDSIQDSLKESRKLS 154 (281)
T ss_dssp HHHHHHHHHHHTTGG---------GCSCCHHHHHHHHHHHHHTS--CCC-TTCEEEEEEEESS-CCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCC---------CCCccHHHHHHHHHHHHHhc--cCC-CCCCEEEEEEecC-CCCCcHHHHHHHHHHH
Confidence 355556555321100 24578899999997777642 111 1234555444221 1223346678899999
Q ss_pred cCCeeEEEEEcCCC-ChHHHHHHHhh--cCC--eeeeeCCcchHHHH
Q 022374 172 RSMVPIDSCYLGAQ-NSAFLQQASYI--TGG--VHHKPQQLDGLFQY 213 (298)
Q Consensus 172 k~~I~Idv~~L~~~-e~~~LqQa~~~--T~G--~Y~~~~~~~~L~q~ 213 (298)
+.+|+|-++++|.. +..+|+++|.. |+| .|+.+.+.+.|.++
T Consensus 155 ~~gv~i~~igiG~~~~~~~L~~iA~~~~~~g~~~~~~~~~~~~L~~~ 201 (281)
T 4hqf_A 155 DRGVKIAVFGIGQGINVAFNRFLVGCHPSDGKCNLYADSAWENVKNV 201 (281)
T ss_dssp HTTCEEEEEEESSSCCHHHHHHHTTSCSSSSCCTTEEEECGGGHHHH
T ss_pred HCCCEEEEEeCCCccCHHHHHhhhCCCCCCCCCceEEecchhhhhcc
Confidence 99999999999853 77899999987 676 77777777666543
No 16
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.52 E-value=1.4e-06 Score=75.39 Aligned_cols=165 Identities=13% Similarity=0.078 Sum_probs=101.7
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHc----CCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchh
Q 022374 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILT----LNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPS 88 (298)
Q Consensus 13 ~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~----~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~ 88 (298)
+--++++||.|..|.. +. .+..|+..++. ..+..+++||... +.++.++|......
T Consensus 7 ~~div~vlD~SgSm~~-----~~----~~k~~~~~~~~~l~~~~~~~~v~lv~F~-~~~~~~~~l~~~~~---------- 66 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIYP-----WD----SVTAFLNDLLKRMDIGPKQTQVGIVQYG-ENVTHEFNLNKYSS---------- 66 (213)
T ss_dssp CEEEEEEEECCTTCCC-----HH----HHHHHHHHHHTTSCBSTTSBEEEEEEES-SSEEEEECTTTCSS----------
T ss_pred CccEEEEEECCCChhh-----HH----HHHHHHHHHHHhcCCCCCCeEEEEEEeC-CCccEEEeccccCC----------
Confidence 4468999999999862 33 44555555554 3578899999886 56788888733221
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCcccc-ccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEE-cCCCCChhhhHHHHH
Q 022374 89 LCATLLQNLEEFMNKDEQLGKQEPEGRIA-CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQ-GSPDGPEQYVAIMNA 166 (298)
Q Consensus 89 ~~~~i~~~L~~l~~~~~~~~~~~~~~~~~-~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~-~S~d~~~qyi~lmN~ 166 (298)
. ..+.+++..+ ... .+ .+.+..||..|+..+............+.|++|+ |-+..+ ..+...
T Consensus 67 ~-~~~~~~i~~l----~~~--------~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~---~~~~~~ 130 (213)
T 1pt6_A 67 T-EEVLVAAKKI----VQR--------GGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN---HRLKKV 130 (213)
T ss_dssp H-HHHHHHHHTC----CCC--------CCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS---HHHHHH
T ss_pred H-HHHHHHHHhc----cCC--------CCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC---ccHHHH
Confidence 0 2233444322 100 12 3678888888877543211111123333444455 222222 234567
Q ss_pred HHHHHcCCeeEEEEEcCCC-C---------hHHHHHHHhh-cCCeeeeeCCcchHHHH
Q 022374 167 IFSAQRSMVPIDSCYLGAQ-N---------SAFLQQASYI-TGGVHHKPQQLDGLFQY 213 (298)
Q Consensus 167 ifaAqk~~I~Idv~~L~~~-e---------~~~LqQa~~~-T~G~Y~~~~~~~~L~q~ 213 (298)
+..+++.+|+|.++++|.. + ...|+++|.. |||.|+.+.+.+.|.+.
T Consensus 131 ~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~iA~~~~~g~~~~~~~~~~l~~i 188 (213)
T 1pt6_A 131 IQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDELALVTI 188 (213)
T ss_dssp HHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHHSCSSHHHHEEEESSGGGGGGG
T ss_pred HHHHHHCCCEEEEEEeccccccccccchhhHHHHHHHhCCCchhcEEEeCCHHHHHHH
Confidence 7888999999999999632 1 3689999999 89999999887655443
No 17
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=98.40 E-value=6.5e-06 Score=82.11 Aligned_cols=177 Identities=12% Similarity=0.050 Sum_probs=112.7
Q ss_pred CeEEEEEeCCcccccc---CCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCC---CCch
Q 022374 14 SLVVVLLDTNPFFWSS---SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGN---GRMP 87 (298)
Q Consensus 14 s~L~iIlD~s~~~w~~---~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~---~~~~ 87 (298)
.-++++||+|..|... .+.+|..+.+.+..|+..-+..++..++|||+...... -.|.+.... -... ....
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~--~~plt~d~~-y~~i~vl~~l~ 84 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGT--DNPLSGGDQ-YQNITVHRHLM 84 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSC--BSTTCTTTC-STTEEEEEEEE
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCC--CCccccccC-CCceEEeecCC
Confidence 5799999999999876 57899999999999999988899999999999875431 112211100 0000 0000
Q ss_pred hHHHHHHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhhhHHHHHH
Q 022374 88 SLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAI 167 (298)
Q Consensus 88 ~~~~~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qyi~lmN~i 167 (298)
.....+++.|.+.+. .+ .+.+.+..||..|.-.+.+... .....++||++++-..+. .....+...+
T Consensus 85 ~~~~~~l~~l~~~l~----~~-------~~~t~i~~al~~A~~~l~~~~~-~~k~~~krIiLlTDg~~~-~~~~~~~~~a 151 (565)
T 1jey_B 85 LPDFDLLEDIESKIQ----PG-------SQQADFLDALIVSMDVIQHETI-GKKFEKRHIEIFTDLSSR-FSKSQLDIII 151 (565)
T ss_dssp CCCHHHHHHHHTTCC----CC-------SSCCCHHHHHHHHHHHHHHHSS-SSCCSEEEEEEECCCCSC-CCCTTHHHHH
T ss_pred CCCHHHHHHHHhhcc----CC-------CccccHHHHHHHHHHHHHHHhh-cccccccEEEEEeCCCCC-CCHHHHHHHH
Confidence 000123444433111 01 1356789999988887765411 112345788888722222 1233566789
Q ss_pred HHHHcCCeeEE-EEEcCCCC---------------------------------hHHHHHHHhhcCC-----eeeeeCC
Q 022374 168 FSAQRSMVPID-SCYLGAQN---------------------------------SAFLQQASYITGG-----VHHKPQQ 206 (298)
Q Consensus 168 faAqk~~I~Id-v~~L~~~e---------------------------------~~~LqQa~~~T~G-----~Y~~~~~ 206 (298)
..|++.+|.|+ ++.+|... -.+|+++++.||| .|+.+.+
T Consensus 152 ~~l~~~gI~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~~ 229 (565)
T 1jey_B 152 HSLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSE 229 (565)
T ss_dssp HHHHHTTEEEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHHH
T ss_pred HHHHhcCcEEEEEeccCCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHHH
Confidence 99999999999 88775320 1259999999999 8887643
No 18
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.37 E-value=4e-06 Score=85.26 Aligned_cols=183 Identities=9% Similarity=0.073 Sum_probs=115.6
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022374 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (298)
Q Consensus 13 ~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (298)
+--+++|||.|..|... .+..+.+.+..|++.+-.....-+++||... +.++.++|....... +. +.
T Consensus 243 ~~div~vlD~SgSM~~~---~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~-~~~~~~~~l~~~~~~--------~~-~~ 309 (741)
T 3hrz_D 243 SMNIYLVLDGSGSIGAS---DFTGAKKCLVNLIEKVASYGVKPRYGLVTYA-TYPKIWVKVSEADSS--------NA-DW 309 (741)
T ss_dssp EEEEEEEEECSTTTCHH---HHHHHHHHHHHHHHHHHHTTCCCEEEEEEES-SSEEEEECTTSGGGG--------CH-HH
T ss_pred ceeEEEEeccCCccccc---chHHHHHHHHHHHHhhhccCCCceEEEEEec-cCCceeEeecccCCc--------CH-HH
Confidence 44699999999999654 4777777777788887766666789999876 567888887763210 00 22
Q ss_pred HHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcC---CCCCCcEEEEEE-cCCCCChhhhHHHHHHH
Q 022374 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSG---LLHPQPRILCLQ-GSPDGPEQYVAIMNAIF 168 (298)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~---~~~~~~rILii~-~S~d~~~qyi~lmN~if 168 (298)
+.++|..+--.... ..+.+.+..||..|+..+....... .....+.|++|+ |-++.+.+.......+.
T Consensus 310 ~~~~i~~l~~~~~~--------~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~p~~~~~~i~ 381 (741)
T 3hrz_D 310 VTKQLNEINYEDHK--------LKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGDPITVIDEIR 381 (741)
T ss_dssp HHHHHTTCCGGGGS--------SSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSCTHHHHHHHH
T ss_pred HHHHHHhccccccc--------CCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCCchHHHHHHH
Confidence 34444332110000 0246788999999998884211110 011223344555 32333334444444443
Q ss_pred ----------HHHcCCeeEEEEEcCC-CChHHHHHHHhhcCCe--eeeeCCcchHHHHHHH
Q 022374 169 ----------SAQRSMVPIDSCYLGA-QNSAFLQQASYITGGV--HHKPQQLDGLFQYLLT 216 (298)
Q Consensus 169 ----------aAqk~~I~Idv~~L~~-~e~~~LqQa~~~T~G~--Y~~~~~~~~L~q~Ll~ 216 (298)
.|++.+|+|.++++|. .+...|+++|..++|. |+.+.+.+.|.+.+-.
T Consensus 382 ~~~~~~~~a~~~~~~gi~i~~igvG~~~~~~~L~~ia~~~~g~~~~~~~~~~~~L~~~~~~ 442 (741)
T 3hrz_D 382 DLLYIGKDRKNPREDYLDVYVFGVGPLVNQVNINALASKKDNEQHVFKVKDMENLEDVFYQ 442 (741)
T ss_dssp HHTTCSSCTTCCCGGGEEEEEEECSSSCCHHHHHHHSCCCTTCCCEECBSSHHHHHHHHHH
T ss_pred HHhhcccccccccccCeeEEEEeCCCcCCHHHHHHHhcCCCCcceEEEeCCHHHHHHHHHH
Confidence 5678899999999974 4788999999999995 7778887766655433
No 19
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.35 E-value=1.4e-05 Score=71.73 Aligned_cols=177 Identities=8% Similarity=0.022 Sum_probs=110.0
Q ss_pred CCeEEEEEeCCccccccCCccH-HHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHH
Q 022374 13 VSLVVVLLDTNPFFWSSSSLSF-SQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (298)
Q Consensus 13 ~s~L~iIlD~s~~~w~~~~~~l-~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~ 91 (298)
+--+++|||.|..|-.. .+ ..+.+.+..|+..+-...+.-+++||... +.++.++|...... .+ .+
T Consensus 18 ~~DivfvlD~SgSM~~~---~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs-~~~~~~~~l~~~~~--------~~-~~ 84 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYP---NWITKVIPMLNGLINSLSLSRDTINLYMNLFG-SYTTELIRLGSGQS--------ID-KR 84 (266)
T ss_dssp CEEEEEEEECSTTTCHH---HHHHTHHHHHHHHHHTCCBCTTSEEEEEEEES-SSEEEEECTTSHHH--------HC-HH
T ss_pred ceeEEEEEECCCCcChh---HHHHHHHHHHHHHHHHcccCCCCcEEEEEEec-CCcceEEecCCCCc--------cC-HH
Confidence 34589999999988543 34 24555556666666544567889999876 45788888654310 00 12
Q ss_pred HHHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhhhHHHHHHHHHH
Q 022374 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQ 171 (298)
Q Consensus 92 ~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qyi~lmN~ifaAq 171 (298)
.+.+.|..+...... .+.+.+..||..|...+... . .....++++||.... .+.+...+...+..++
T Consensus 85 ~~~~~i~~l~~~~~~---------~G~T~~~~AL~~a~~~l~~~--~-~r~~~~~~iIllTDG-~~~d~~~~~~~a~~l~ 151 (266)
T 4hqo_A 85 QALSKVTELRKTYTP---------YGTTSMTAALDEVQKHLNDR--V-NREKAIQLVILMTDG-VPNSKYRALEVANKLK 151 (266)
T ss_dssp HHHHHHHHHHHHCCC---------CSCCCHHHHHHHHHHHHHTT--C-SCTTSEEEEEEEECS-CCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCC---------CCCCCHHHHHHHHHHHHhhc--c-ccCCCCeEEEEEccC-CCCCchHHHHHHHHHH
Confidence 355555554211000 24678888998886665542 1 112233444444221 1223446778899999
Q ss_pred cCCeeEEEEEcCCC-ChHHHHHHHhhc--CC--eeeeeCCcchHHHHHH
Q 022374 172 RSMVPIDSCYLGAQ-NSAFLQQASYIT--GG--VHHKPQQLDGLFQYLL 215 (298)
Q Consensus 172 k~~I~Idv~~L~~~-e~~~LqQa~~~T--~G--~Y~~~~~~~~L~q~Ll 215 (298)
+.+|+|-++++|.. +..+|++++... +| .|+.+.+.+.|.+.+-
T Consensus 152 ~~gi~i~~iGiG~~~~~~~L~~iA~~~~~~g~~~~~~~~d~~~L~~i~~ 200 (266)
T 4hqo_A 152 QRNVRLAVIGIGQGINHQFNRLIAGCRPREPNCKFYSYADWNEAVALIK 200 (266)
T ss_dssp HTTCEEEEEECSSSCCHHHHHHHHTCCTTCSSCTTEECSCHHHHHHHHH
T ss_pred HCCCEEEEEecCcccCHHHHHHhhCCCCCCCCCCeEEecCHHHHHHHHH
Confidence 99999999999853 677899999885 33 6677777766665443
No 20
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.32 E-value=1.2e-06 Score=74.54 Aligned_cols=170 Identities=8% Similarity=0.021 Sum_probs=102.9
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022374 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (298)
Q Consensus 13 ~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (298)
+--+++|||.|..|... ++..+.+.+..|+..+- .+.-+++||... +.++.++|.....+. +.
T Consensus 5 ~~div~vlD~SgSm~~~---~~~~~k~~~~~~~~~l~--~~~~~v~vv~f~-~~~~~~~~l~~~~~~-----------~~ 67 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIPH---DFRRMKEFVSTVMEQLK--KSKTLFSLMQYS-EEFRIHFTFKEFQNN-----------PN 67 (194)
T ss_dssp CEEEEEEEECCTTSCHH---HHHHHHHHHHHHHHHHC--CTTEEEEEEEES-SSEEEEECHHHHHHS-----------CC
T ss_pred CeeEEEEEeCCCCCCHH---HHHHHHHHHHHHHHhcC--CCCeEEEEEEec-CCceEEEecCCcCCH-----------HH
Confidence 44689999999998654 46666666667776654 456789999885 557778775431100 01
Q ss_pred HHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhhhHHHHHHHHHHc
Q 022374 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172 (298)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qyi~lmN~ifaAqk 172 (298)
+.+.+..+ .. ..+.+.+..||..|+..+........+...+.|++|+-.... .+...+...+..+++
T Consensus 68 ~~~~i~~l----~~--------~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~-~d~~~~~~~~~~~~~ 134 (194)
T 1mf7_A 68 PRSLVKPI----TQ--------LLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKF-GDPLGYEDVIPEADR 134 (194)
T ss_dssp HHHHHTTC----CC--------CCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCB-SCSSCGGGTHHHHHH
T ss_pred HHHHHHhC----cC--------CCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCC-CCchhhHHHHHHHHH
Confidence 23333221 10 024678888888888644322111111223334445522111 122223345778899
Q ss_pred CCeeEEEEEcCCCC-----hHHHHHHHhhc-CCeeeeeCCcchHHH
Q 022374 173 SMVPIDSCYLGAQN-----SAFLQQASYIT-GGVHHKPQQLDGLFQ 212 (298)
Q Consensus 173 ~~I~Idv~~L~~~e-----~~~LqQa~~~T-~G~Y~~~~~~~~L~q 212 (298)
.+|+|.++++|... ...|+++|..+ +|.|+.+.+.+.|.+
T Consensus 135 ~gi~v~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~l~~ 180 (194)
T 1mf7_A 135 EGVIRYVIGVGDAFRSEKSRQELNTIASKPPRDHVFQVNNFEALKT 180 (194)
T ss_dssp TTEEEEEEEESGGGCSHHHHHHHHHHSCSSHHHHEEEESSGGGGGG
T ss_pred CCCEEEEEEecccccccccHHHHHHHhCCCCcccEEEeCCHHHHHH
Confidence 99999999997432 58999999996 578888887666543
No 21
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.31 E-value=1.2e-08 Score=86.56 Aligned_cols=161 Identities=11% Similarity=0.023 Sum_probs=103.7
Q ss_pred CCCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHH
Q 022374 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCA 91 (298)
Q Consensus 12 ~~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~ 91 (298)
.+..+++|||.|..|.. .++..+-+.+..|+... ..+..+++||...+...++++|...+. .
T Consensus 4 ~~~~vv~vlD~SgSM~~---~~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~~~~~~~~~~~-------------~ 65 (189)
T 2x31_A 4 SDRVLIFAVDASGSAAV---ARLSEAKGAVELLLGRA--YAARDHVSLITFRGTAAQVLLQPSRSL-------------T 65 (189)
T ss_dssp SCCEEEEEEECCTTSCC-----CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCCCBCTTTCSCH-------------H
T ss_pred CCeEEEEEEECCCCCCc---hHHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCceEecCCCCCH-------------H
Confidence 46689999999999953 46777666666676543 478889999998865667777765422 1
Q ss_pred HHHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEE-cCCCCChhhh--------H
Q 022374 92 TLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQ-GSPDGPEQYV--------A 162 (298)
Q Consensus 92 ~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~-~S~d~~~qyi--------~ 162 (298)
.+.+.|..+ .. .+.+.+..||..|+..+.+.. .....+.|++|+ |.++.+.++- .
T Consensus 66 ~~~~~i~~l----~~---------~g~T~~~~al~~a~~~l~~~~---~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~ 129 (189)
T 2x31_A 66 QTKRQLQGL----PG---------GGGTPLASGMEMAMVTAKQAR---SRGMTPTIALLTDGRGNIALDGTANRELAGEQ 129 (189)
T ss_dssp HHHHHHHHC----CC---------CBCCCCHHHHHHHHHHHHTCT---TTCSSEEEEECCBSCCSSCCTHHHHHGGGTCC
T ss_pred HHHHHHhcC----CC---------CCCCCHHHHHHHHHHHHHhcc---CCCCceEEEEECCCCCCCCCCccccccchhHH
Confidence 233333322 11 246788999999998887531 112344555555 3332221110 0
Q ss_pred HHHHHHHHHcCCeeEEEEEcCCCChHHHHHHHhhcCCeeeeeCC
Q 022374 163 IMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQ 206 (298)
Q Consensus 163 lmN~ifaAqk~~I~Idv~~L~~~e~~~LqQa~~~T~G~Y~~~~~ 206 (298)
+.+.+..+++.+|+|.++.++..+..+|+++|+.|||.|+.+.+
T Consensus 130 ~~~~~~~~~~~gi~v~~ig~g~~~~~~L~~iA~~~~G~~~~~~~ 173 (189)
T 2x31_A 130 ATKVARAIRASGMPAVIIDTAMRPNPALVDLARTMDAHYIALPR 173 (189)
T ss_dssp CEEEEECTGGGGSCCTHHHHHHSSCSSSCSTTTEEEESSTTTHH
T ss_pred HHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHhcCCeEEECCC
Confidence 11234456788899999999755678999999999999998754
No 22
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=98.01 E-value=0.00023 Score=60.68 Aligned_cols=168 Identities=13% Similarity=0.043 Sum_probs=102.8
Q ss_pred CCCCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHH
Q 022374 11 DDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLC 90 (298)
Q Consensus 11 ~~~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~ 90 (298)
..+--++++||.|..|... ++..+.+.+..|++.+-...+.-+++||... +.++..+|.....+ .
T Consensus 19 ~~~~DivfvlD~S~Sm~~~---~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs-~~~~~~~~l~~~~~----------~- 83 (199)
T 3zqk_A 19 SMVLDVAFVLEGSDKIGEA---DFNRSKEFMEEVIQRMDVGQDSIHVTVLQYS-YMVTVEYPFSEAQS----------K- 83 (199)
T ss_dssp CCCCEEEEEEECCTTTCHH---HHHHHHHHHHHHHHHSCBSTTSBEEEEEEES-SSEEEEECTTSCCC----------H-
T ss_pred CCCcCEEEEEECCCCCCHH---HHHHHHHHHHHHHHhcCCCCCceEEEEEEEC-CcccEEEecCCcCC----------H-
Confidence 4456799999999988643 5777777777777776555678899999877 56788888764321 0
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCcccc-ccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhhhHHHHHHHH
Q 022374 91 ATLLQNLEEFMNKDEQLGKQEPEGRIA-CSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFS 169 (298)
Q Consensus 91 ~~i~~~L~~l~~~~~~~~~~~~~~~~~-~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qyi~lmN~ifa 169 (298)
+.+.+++..+- .. .+ .+.+..||..|+..+........+...+-|++|+-.. .. +.+. .
T Consensus 84 ~~~~~~i~~l~----~~--------gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~-~~-d~v~------~ 143 (199)
T 3zqk_A 84 GDILQRLREIR----YQ--------GGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNP-AS-DEIK------R 143 (199)
T ss_dssp HHHHHHHHHCC----CC--------CCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSC-CS-SCCC------C
T ss_pred HHHHHHHHhCc----CC--------CCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCC-Cc-hHHH------H
Confidence 23444444331 11 12 3678888888776543221111122333344444221 11 1111 1
Q ss_pred HHcCCeeEEEEEcC-CCChHHHHHHHhhcCCeeeeeCCcchHHHHHHH
Q 022374 170 AQRSMVPIDSCYLG-AQNSAFLQQASYITGGVHHKPQQLDGLFQYLLT 216 (298)
Q Consensus 170 Aqk~~I~Idv~~L~-~~e~~~LqQa~~~T~G~Y~~~~~~~~L~q~Ll~ 216 (298)
.+.+|+|-++++| ..+...|+++|. .++ ++.+.+.+.|-+.+..
T Consensus 144 -~~~~v~v~~iGiG~~~~~~~L~~iA~-~~~-~~~~~~~~~L~~~~~~ 188 (199)
T 3zqk_A 144 -LPGDIQVVPIGVGPNANVQELERIGW-PNA-PILIQDFETLPREAPD 188 (199)
T ss_dssp -CCTTEEEEEEEESTTCCHHHHHHHHT-TSC-CEEESCTTTHHHHHHH
T ss_pred -HhCCCEEEEEEcCCCCCHHHHHHHhC-CCc-eEEeCCHHHHHHHHHH
Confidence 1378999999997 568899999998 444 5577887777665543
No 23
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=97.98 E-value=0.0002 Score=60.00 Aligned_cols=153 Identities=10% Similarity=0.042 Sum_probs=85.8
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHH
Q 022374 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCAT 92 (298)
Q Consensus 13 ~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~~ 92 (298)
+--++++||.|..|-.. ++..+.+.+..|++.+-......+++||... +.+...+|....... + .+.
T Consensus 17 ~~divfvlD~SgSm~~~---~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~-~~~~~~~~l~~~~~~--------~-~~~ 83 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQ---NFRLVKQFLHTFLMVLPIGPEEVNNAVVTYS-TDVHLQWDLQSPNAV--------D-KQL 83 (178)
T ss_dssp CEEEEEEEECCTTTCHH---HHHHHHHHHHHHHHHSCBSTTSEEEEEEEES-SSEEEEECTTSGGGS--------C-HHH
T ss_pred CeeEEEEEECCCCCCHH---HHHHHHHHHHHHHHhcCCCCCCeEEEEEEeC-CceEEEEeCCCCCcc--------C-HHH
Confidence 56799999999988543 4666555566666553222345799999876 567788887542200 0 022
Q ss_pred HHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhhhHHHHHHHHHHc
Q 022374 93 LLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQR 172 (298)
Q Consensus 93 i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qyi~lmN~ifaAqk 172 (298)
+.+.|..+- .. .+.+.+..||..|+..+.....+..+...+.|++|+ -...... ..+...+..+++
T Consensus 84 ~~~~i~~l~----~~--------~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillT-DG~~~~~-~~~~~~~~~l~~ 149 (178)
T 2xgg_A 84 AAHAVLDMP----YK--------KGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMT-DGESDSD-FRTVRAAKEIRE 149 (178)
T ss_dssp HHHHHHHCC----CC--------CCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEE-SSCCCHH-HHHSHHHHHHHH
T ss_pred HHHHHHhCC----CC--------CCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEc-CCCCCCC-ccHHHHHHHHHH
Confidence 344443321 00 246788999999988765421111122333444444 2212222 235567888899
Q ss_pred CCeeEEEEEcCCC-ChHHHHH
Q 022374 173 SMVPIDSCYLGAQ-NSAFLQQ 192 (298)
Q Consensus 173 ~~I~Idv~~L~~~-e~~~LqQ 192 (298)
.+|+|.++++|.. +..+|+.
T Consensus 150 ~gi~v~~igvG~~~~~~~l~~ 170 (178)
T 2xgg_A 150 LGGIVTVLAVGHYVAAALVPR 170 (178)
T ss_dssp TTCEEEEEECC----------
T ss_pred CCCEEEEEEcCCcCCHHHHhc
Confidence 9999999999743 4445443
No 24
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=97.72 E-value=0.00054 Score=68.85 Aligned_cols=150 Identities=13% Similarity=0.140 Sum_probs=99.4
Q ss_pred CeEEEEEeCCcccccc----CCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCce---------EEEecCCCCCCCC
Q 022374 14 SLVVVLLDTNPFFWSS----SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSC---------DYVYDSSSTGNQS 80 (298)
Q Consensus 14 s~L~iIlD~s~~~w~~----~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a---------~~lyp~~~~~~~~ 80 (298)
.-++++||+|+.|-.. .+.+|..+++.+..|++.-...++...+|||+...... ..+.|...-.
T Consensus 36 e~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l~~d~i~v~~~L~~~~--- 112 (609)
T 1jey_A 36 DSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPG--- 112 (609)
T ss_dssp EEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCCTTEEEEEEEECCC---
T ss_pred eEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcCCCCCeEEEecCCCCC---
Confidence 4599999999999875 57899999999999999999999999999999886542 1222221111
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhh------hccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCC
Q 022374 81 VGNGRMPSLCATLLQNLEEFMNKD------EQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSP 154 (298)
Q Consensus 81 ~~~~~~~~~~~~i~~~L~~l~~~~------~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~ 154 (298)
...++.|.+++.++ ...+. ...+.+..||..|.-.+... .....++||++|+-..
T Consensus 113 ----------~~~ik~l~~l~~~~~~~~~~~~~g~------~~~t~l~daL~~a~~~f~~~---~~k~~~k~IiL~TDg~ 173 (609)
T 1jey_A 113 ----------AKRILELDQFKGQQGQKRFQDMMGH------GSDYSLSEVLWVCANLFSDV---QFKMSHKRIMLFTNED 173 (609)
T ss_dssp ----------HHHHHHHHTTSHHHHHHHHHHHHCC------SCCCCHHHHHHHHHHHHHTC---SSCEEEEEEEEEESCS
T ss_pred ----------HHHHHHHHHHhhcccchhhhhhcCC------CCCCCHHHHHHHHHHHHHhh---chhhcCCEEEEEcCCC
Confidence 11344444443210 00110 13578899998888766542 1122477888888432
Q ss_pred CCChh----hhHHHHHHHHHHcCCeeEEEEEcCCC
Q 022374 155 DGPEQ----YVAIMNAIFSAQRSMVPIDSCYLGAQ 185 (298)
Q Consensus 155 d~~~q----yi~lmN~ifaAqk~~I~Idv~~L~~~ 185 (298)
++... .......+..|++.+|.|.++.+|..
T Consensus 174 ~p~~~~~~~~~~~~~~a~~l~~~gI~i~~igig~~ 208 (609)
T 1jey_A 174 NPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKP 208 (609)
T ss_dssp CTTTTCHHHHHHHHHHHHHHHHHTEEEEEEEBCCT
T ss_pred CCCCCchHHHHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 22111 23566788899999999999999743
No 25
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=97.65 E-value=3.7e-05 Score=64.67 Aligned_cols=156 Identities=10% Similarity=0.097 Sum_probs=90.3
Q ss_pred eEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCC-CCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHHH
Q 022374 15 LVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQL-NQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATL 93 (298)
Q Consensus 15 ~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~-N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~~i 93 (298)
-++++||.|..|-.. ++..+.+.+..+++.+ .+. -+++||... +.++..+|......
T Consensus 4 divfvlD~S~Sm~~~---~~~~~k~~~~~~~~~l---~~~~~rv~vv~fs-~~~~~~~~l~~~~~--------------- 61 (179)
T 1mjn_A 4 DLVFLFDGSMSLQPD---EFQKILDFMKDVMKKC---SNTSYQFAAVQFS-TSYKTEFDFSDYVK--------------- 61 (179)
T ss_dssp EEEEEEECBTTCCHH---HHHHHHHHHHHHHHHT---TTSSEEEEEEEES-SSEEEEECHHHHHH---------------
T ss_pred cEEEEEeCCCCCCHH---HHHHHHHHHHHHHHHh---CCCCeEEEEEEEC-CceeEEEcCcccCC---------------
Confidence 589999999988543 5666666677777764 344 489999876 56677777542110
Q ss_pred HHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEE-E-cCCCCChhhhHHHHHHHHHH
Q 022374 94 LQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCL-Q-GSPDGPEQYVAIMNAIFSAQ 171 (298)
Q Consensus 94 ~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii-~-~S~d~~~qyi~lmN~ifaAq 171 (298)
.+.+.+++..-... .+.+.+..||..|...+...... .....++++|+ + |-+.... . .++
T Consensus 62 ~~~~~~~~~~i~~~--------~g~T~~~~aL~~a~~~~~~~~~g-~r~~~~~~iillTDG~~~~~~---~------~~~ 123 (179)
T 1mjn_A 62 RKDPDALLKHVKHM--------LLLTNTFGAINYVATEVFREELG-ARPDATKVLIIITDGEATDSG---N------IDA 123 (179)
T ss_dssp HCCHHHHHTTCCCC--------CBCCCHHHHHHHHHHHTSSGGGT-CCTTSEEEEEEEESSCCSSCS---C------CGG
T ss_pred HHHHHHHHHhcccC--------CCCChHHHHHHHHHHHhcccccC-CCCCCCeEEEEEcCCCCCCCc---c------hHH
Confidence 01122222221110 24567788888877533221111 11223455554 4 2221111 1 136
Q ss_pred cCCeeEEEEEcCCCCh-----HHHHHHHhhcCCee-eeeCCcchH
Q 022374 172 RSMVPIDSCYLGAQNS-----AFLQQASYITGGVH-HKPQQLDGL 210 (298)
Q Consensus 172 k~~I~Idv~~L~~~e~-----~~LqQa~~~T~G~Y-~~~~~~~~L 210 (298)
+.+|+|-++++|.... ..|+++|..++|.| +.+.+.+.|
T Consensus 124 ~~~i~i~~igvG~~~~~~~~~~~L~~iA~~~~~~~~~~~~~~~~L 168 (179)
T 1mjn_A 124 AKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKL 168 (179)
T ss_dssp GTTSEEEEEEESGGGCSHHHHHTTGGGSCSCHHHHEEEESSGGGS
T ss_pred HCCCEEEEEEccccccccccHHHHHHHhCCccHhcEEEeCCHHHH
Confidence 7899999999974332 68999999998864 566665544
No 26
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.44 E-value=0.00013 Score=78.00 Aligned_cols=166 Identities=13% Similarity=0.083 Sum_probs=102.9
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCC--CCCCCCCCCCchhHH
Q 022374 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSS--TGNQSVGNGRMPSLC 90 (298)
Q Consensus 13 ~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~--~~~~~~~~~~~~~~~ 90 (298)
+--+++|||.|..|.. .++..+.+.+..|+..+- ...-+++||... ..++..+|... +.. +
T Consensus 130 ~~DIvfvlD~SgSm~~---~~f~~~k~fv~~lv~~~~--~~~~rVglV~Fs-~~~~~~~~lt~~~~~~---------~-- 192 (1095)
T 3k6s_A 130 EQDIVFLIDGSGSISS---RNFATMMNFVRAVISQFQ--RPSTQFSLMQFS-NKFQTHFTFEEFRRSS---------N-- 192 (1095)
T ss_dssp CEEEEEEEECCTTSCS---HHHHHHHHHHHHHHHSSC--SSSEEEEEEEES-SSEEEEECSHHHHSCS---------C--
T ss_pred CccEEEEEcCCCCCCh---hHHHHHHHHHHHHHHhcc--ccccEEEEEEEC-CeEEEEecCcccCCHH---------H--
Confidence 3468999999998854 356666666666665543 334589999876 56788888753 110 0
Q ss_pred HHHHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCCChhhhHHHHHHHHH
Q 022374 91 ATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIMNAIFSA 170 (298)
Q Consensus 91 ~~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~~~qyi~lmN~ifaA 170 (298)
+.+.+..+ .. ..+.+.+..||..|+..+.+...... ...++++|+........+...+...+..|
T Consensus 193 --l~~ai~~i----~~--------~gG~T~~g~AL~~a~~~lf~~~~g~R-~~~~kviIllTDG~~~~d~~~~~~~a~~~ 257 (1095)
T 3k6s_A 193 --PLSLLASV----HQ--------LQGFTYTATAIQNVVHRLFHASYGAR-RDAAKILIVITDGKKEGDSLDYKDVIPMA 257 (1095)
T ss_dssp --GGGGTTTC----CC--------CCSCBCHHHHHHHHHTTTTSTTTTCC-SSSEEEEEEEESSCCBSCSSCHHHHHHHH
T ss_pred --HHHHHhhh----hc--------ccCCChHHHHHHHHHHhhccccccCC-CCCCeEEEEEeCCCcCCCchhHHHHHHHH
Confidence 11222111 00 02467888889888876543211111 22345555542222212333456788899
Q ss_pred HcCCeeEEEEEcCCC-----ChHHHHHHHhhcCC-eeeeeCCcchH
Q 022374 171 QRSMVPIDSCYLGAQ-----NSAFLQQASYITGG-VHHKPQQLDGL 210 (298)
Q Consensus 171 qk~~I~Idv~~L~~~-----e~~~LqQa~~~T~G-~Y~~~~~~~~L 210 (298)
++.+|+|-+|++|.+ +...|+++|..++| .++.+.+.+.|
T Consensus 258 r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs~p~g~~vf~v~d~~~L 303 (1095)
T 3k6s_A 258 DAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQEHIFKVEDFDAL 303 (1095)
T ss_dssp HHHCEEECCEEBSSGGGSTTSSHHHHTTSCSSTTTSCCCBSCSGGG
T ss_pred HHCCCEEEEEecccccccccCHHHHHHHHcCCCCceEEEcCCHHHH
Confidence 999999999999864 67899999999988 55556665443
No 27
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=96.87 E-value=0.0038 Score=55.62 Aligned_cols=48 Identities=13% Similarity=0.032 Sum_probs=38.7
Q ss_pred HHHHHHHcCCeeEEEEEcCCC------ChHHHHHHHhhcCCeeeeeCCcchHHHH
Q 022374 165 NAIFSAQRSMVPIDSCYLGAQ------NSAFLQQASYITGGVHHKPQQLDGLFQY 213 (298)
Q Consensus 165 N~ifaAqk~~I~Idv~~L~~~------e~~~LqQa~~~T~G~Y~~~~~~~~L~q~ 213 (298)
.....|++.+|+|.+|+++.. +...|+++|+.|||.|+.+. .+.|.|.
T Consensus 29 ~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~~IA~~tGG~yf~a~-~~~l~~~ 82 (242)
T 3rag_A 29 EAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAHSIADAGGGMCRIVQ-PADISAT 82 (242)
T ss_dssp HHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHHHHHHHTTSCEEEEC-GGGHHHH
T ss_pred HHHHHHHHCCCEEEEEEecCCccccchhHHHHHHHHHhcCCeEEEee-HHHHHHH
Confidence 466788999999999999533 24789999999999999984 4665554
No 28
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=95.88 E-value=0.019 Score=51.12 Aligned_cols=99 Identities=16% Similarity=0.006 Sum_probs=70.0
Q ss_pred CCCCCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCc--eEEE-ecCCCCCCCCCCCCCc
Q 022374 10 SDDVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNS--CDYV-YDSSSTGNQSVGNGRM 86 (298)
Q Consensus 10 ~~~~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~--a~~l-yp~~~~~~~~~~~~~~ 86 (298)
++.+-.++++||.|..|.. ++..+-+.+..++.++-.....++++||...... +..+ -|.+.+..
T Consensus 131 e~~~~~vvfLVDtSgSM~~----kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~~~~ll~pfT~~~~-------- 198 (242)
T 3rag_A 131 DEVALHLVVCLDTSASMRD----KIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEEATRLVQPFSSEVN-------- 198 (242)
T ss_dssp HHSCEEEEEEEECSGGGTT----THHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTCSCEEEEEEESSCC--------
T ss_pred ccCCCCEEEEEECcccHHH----HHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCccceeecCCCCChHH--------
Confidence 3456789999999999973 5888888888888877666779999999988653 4433 36555431
Q ss_pred hhHHHHHHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcC
Q 022374 87 PSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSG 139 (298)
Q Consensus 87 ~~~~~~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~ 139 (298)
+...+..+ .. .|.+.|..||..|+.++.+..++.
T Consensus 199 ------~~~~l~~L-~a------------gG~Tplg~AL~~A~~~~~~~~~~~ 232 (242)
T 3rag_A 199 ------VAALEAEL-VA------------RGGTPTGPAIDHAADLLLSHARNV 232 (242)
T ss_dssp ------HHHHHHHC-CC------------CSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHhhC-CC------------CCCCcHHHHHHHHHHHHHHHhhcC
Confidence 22333333 11 256789999999999998776653
No 29
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=95.07 E-value=0.71 Score=45.23 Aligned_cols=51 Identities=8% Similarity=-0.033 Sum_probs=31.1
Q ss_pred CCCCeEEEEEeCCcccccc-CCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEec
Q 022374 11 DDVSLVVVLLDTNPFFWSS-SSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64 (298)
Q Consensus 11 ~~~s~L~iIlD~s~~~w~~-~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~ 64 (298)
+.+--++|+||+|.+|... ...++.. .+. ..+-+|....+..++++|+..+
T Consensus 366 ~~~~~v~lvvD~SgSM~~~~~~~~l~~-~~~--Aa~l~~~~~~~~d~vglv~Fs~ 417 (538)
T 1yvr_A 366 PTGKRFLLAIDVSASMNQRVLGSILNA-SVV--AAAMCMLVARTEKDSHMVAFSD 417 (538)
T ss_dssp CCCCCEEEEEECSGGGGSBSTTSSCBH-HHH--HHHHHHHHHHHCSSEEEEEESS
T ss_pred CCCceEEEEEECccccCCCCCCCcHHH-HHH--HHHHHHHHhccCCceEEEEECC
Confidence 4556788999999999865 1123332 222 1122334445677899999875
No 30
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=94.69 E-value=0.73 Score=47.68 Aligned_cols=82 Identities=17% Similarity=0.141 Sum_probs=57.8
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCC-CCCh----------------h---hh-----HHHHHHHHHH
Q 022374 117 ACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSP-DGPE----------------Q---YV-----AIMNAIFSAQ 171 (298)
Q Consensus 117 ~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~-d~~~----------------q---yi-----~lmN~ifaAq 171 (298)
....+..||+.|...+.. .-.||+++.+++ ..+. + +. -+-+....|.
T Consensus 304 ~~~a~G~AL~~A~~lL~~--------~GGrI~~F~sg~pt~GpG~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~ 375 (810)
T 1pcx_A 304 TNFALGPALKSAYHLIGG--------VGGKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCS 375 (810)
T ss_dssp CCCCHHHHHHHHHHHHTT--------TCEEEEEEESSCCCSSTTCCCC--------------------CCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHh--------cCCEEEEEecCCCCCCCCcccccccccccCcccchhhhcccchHHHHHHHHHHH
Confidence 467788899999888863 236999998763 1100 0 10 1224566788
Q ss_pred cCCeeEEEEEcCCC--ChHHHHHHHhhcCCeeeeeCC
Q 022374 172 RSMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQQ 206 (298)
Q Consensus 172 k~~I~Idv~~L~~~--e~~~LqQa~~~T~G~Y~~~~~ 206 (298)
+++|.||++..+.. +..-++.+++.|||.-+...+
T Consensus 376 ~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~ 412 (810)
T 1pcx_A 376 KVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPG 412 (810)
T ss_dssp HTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEET
T ss_pred HCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCC
Confidence 99999999998533 678899999999999776654
No 31
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=94.29 E-value=5.4 Score=40.92 Aligned_cols=170 Identities=12% Similarity=0.100 Sum_probs=98.0
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCC--------CCEEEEEEecCceEEEecCCCCCC------
Q 022374 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQL--------NQVVVIATGYNSCDYVYDSSSTGN------ 78 (298)
Q Consensus 13 ~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~--------N~l~VIa~~~~~a~~lyp~~~~~~------ 78 (298)
|-..+.|||++...-.. ..++.+..-|.+.|..=|. -+||+|+... .--+|....+..
T Consensus 173 pp~y~FvIDvs~~av~s------g~l~~~~~si~~~L~~lp~~~~~~~~~~~VG~ITfd~--~vh~y~l~~~~~~~q~~v 244 (766)
T 3eh2_A 173 PPAFIFMIDVSYNAIRT------GLVRLLCEELKSLLDFLPREGGAEESAIRVGFVTYNK--VLHFYNVKSSLAQPQMMV 244 (766)
T ss_dssp CCEEEEEEECSHHHHHT------THHHHHHHHHHHHGGGCCCCSSCSSCCCEEEEEEESS--SEEEEECCTTCSSCEEEE
T ss_pred CCEEEEEEECchhhccc------hHHHHHHHHHHHHHHhCCcccccCCccceEEEEEeCC--EEEEEECCCCCCCceEEE
Confidence 44667899998643222 1233444445555554443 4799998753 244566554321
Q ss_pred -----CCC---CC------CCchhHHHHHHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCC
Q 022374 79 -----QSV---GN------GRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ 144 (298)
Q Consensus 79 -----~~~---~~------~~~~~~~~~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~ 144 (298)
+.- .. .+-......+++.|.+...... ..++.++.||..|+..+... ..-
T Consensus 245 v~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~----------~~~t~~g~al~aa~~~l~~~------~~G 308 (766)
T 3eh2_A 245 VSDVADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTR----------ETETVFVPVIQAGMEALKAA------ECA 308 (766)
T ss_dssp ECCTTTCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCC----------CCCCCSHHHHHHHHHHHHHT------TCC
T ss_pred ecChhhhccccccceeEeHHHHHHHHHHHHHhhhhhccCCC----------CCcchHHHHHHHHHHHhccC------CCC
Confidence 000 00 0111122345555554432211 23456778887777776532 346
Q ss_pred cEEEEEEcC-CCC-Ch-----------------------hhhHHHHHHHHHHcCCeeEEEEEcCCC--ChHHHHHHHhhc
Q 022374 145 PRILCLQGS-PDG-PE-----------------------QYVAIMNAIFSAQRSMVPIDSCYLGAQ--NSAFLQQASYIT 197 (298)
Q Consensus 145 ~rILii~~S-~d~-~~-----------------------qyi~lmN~ifaAqk~~I~Idv~~L~~~--e~~~LqQa~~~T 197 (298)
.||+++.++ |.. +. +.--+-+....+.+++|.||++..+.. +..-++.++..|
T Consensus 309 GkI~~F~s~lP~t~GpG~l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~T 388 (766)
T 3eh2_A 309 GKLFLFHTSLPIAEAPGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLT 388 (766)
T ss_dssp EEEEEEECSCCCSSSTTCCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHT
T ss_pred cEEEEEecCCCCcCCCcccccccccccCCCcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhc
Confidence 799999876 431 10 001123467778899999999998532 678999999999
Q ss_pred CCeeeeeCC
Q 022374 198 GGVHHKPQQ 206 (298)
Q Consensus 198 ~G~Y~~~~~ 206 (298)
||.-+...+
T Consensus 389 GG~v~~y~~ 397 (766)
T 3eh2_A 389 GGSVYKYAS 397 (766)
T ss_dssp TCCEEECTT
T ss_pred CceEEEeCC
Confidence 998777654
No 32
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=94.26 E-value=4.5 Score=41.51 Aligned_cols=170 Identities=12% Similarity=0.098 Sum_probs=98.2
Q ss_pred CCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCC--------CEEEEEEecCceEEEecCCCCCCCC----
Q 022374 13 VSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLN--------QVVVIATGYNSCDYVYDSSSTGNQS---- 80 (298)
Q Consensus 13 ~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N--------~l~VIa~~~~~a~~lyp~~~~~~~~---- 80 (298)
|-..+.|||++...-.. ..++.+..-|.+.|..=|.+ +||+|+... .--+|.......+.
T Consensus 177 pp~y~FvIDvs~~av~s------g~l~~~~~sl~~~L~~lP~~~~~~~~~~~VG~ITfd~--~vh~y~l~~~~~q~q~~v 248 (770)
T 3efo_B 177 PPAFIFMIDVSYSNIKN------GLVKLICEELKTMLEKIPKEEQEETSAIRVGFITYNK--VLHFFNVKSNLAQPQMMV 248 (770)
T ss_dssp CCEEEEEEECSHHHHHT------THHHHHHHHHHHHGGGCCCCTTSSSCSCEEEEEEESS--SEEEEECCTTCSSCEEEE
T ss_pred CcEEEEEEEcchhhccc------hHHHHHHHHHHHHHHhCCccccccCccceEEEEEeCC--EEEEEeCCCcccCceEEE
Confidence 45677899998744322 13444444555555554543 799998753 24456554432100
Q ss_pred ----C----C--------CCCchhHHHHHHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCC
Q 022374 81 ----V----G--------NGRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ 144 (298)
Q Consensus 81 ----~----~--------~~~~~~~~~~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~ 144 (298)
. . ..+-.+..+.+++.|.+...... ..++.++.||..|+..+... ..-
T Consensus 249 v~d~~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~----------~~~t~~g~al~aa~~~l~~~------~~G 312 (770)
T 3efo_B 249 VTDVGEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSN----------ENETVFAPVIQAGMEALKAA------DCP 312 (770)
T ss_dssp ECCTTSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCC----------CCCCCCHHHHHHHHHHHHHH------TCC
T ss_pred ecccccccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCC----------CCcchHHHHHHHHHHHhccC------CCC
Confidence 0 0 00111122345555554432211 13456777887777776542 234
Q ss_pred cEEEEEEcC-CCC-Ch-----------------------hhhHHHHHHHHHHcCCeeEEEEEcCCC--ChHHHHHHHhhc
Q 022374 145 PRILCLQGS-PDG-PE-----------------------QYVAIMNAIFSAQRSMVPIDSCYLGAQ--NSAFLQQASYIT 197 (298)
Q Consensus 145 ~rILii~~S-~d~-~~-----------------------qyi~lmN~ifaAqk~~I~Idv~~L~~~--e~~~LqQa~~~T 197 (298)
.||+++.++ |.. +. +.--+-+....+.+++|.||++..+.. +..-++.++..|
T Consensus 313 GkI~~F~s~lP~t~GpG~l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~T 392 (770)
T 3efo_B 313 GKLFIFHSSLPTAEAPGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLT 392 (770)
T ss_dssp EEEEEEECSCCCSSSTTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHT
T ss_pred cEEEEEecCCCCcCCCccccccccccccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhc
Confidence 699999876 431 10 001122466778999999999998533 678899999999
Q ss_pred CCeeeeeCC
Q 022374 198 GGVHHKPQQ 206 (298)
Q Consensus 198 ~G~Y~~~~~ 206 (298)
||.-+...+
T Consensus 393 GG~v~~y~~ 401 (770)
T 3efo_B 393 GGTLYKYNN 401 (770)
T ss_dssp TCCEEECTT
T ss_pred CceEEEecC
Confidence 998776655
No 33
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=94.23 E-value=3.7 Score=42.12 Aligned_cols=99 Identities=18% Similarity=0.176 Sum_probs=67.8
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCC-C----------h-------------hhh----H-HHHHH
Q 022374 117 ACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG-P----------E-------------QYV----A-IMNAI 167 (298)
Q Consensus 117 ~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~-~----------~-------------qyi----~-lmN~i 167 (298)
....+..||..|+..+.... ...-.||+++.+++.. + . .|. . +-+..
T Consensus 264 ~~~a~G~Al~~A~~lL~~~~----~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la 339 (769)
T 2nut_A 264 PLRSSGVALSIAVGLLECTF----PNTGARIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALA 339 (769)
T ss_dssp CCCCHHHHHHHHHHHHHHHS----CSSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHhhcc----cCCCcEEEEEeCCCCCCCCCCCcCcccccccccccccccchhhhccchHHHHHHHH
Confidence 45678889999998887531 2445799999876310 0 0 010 1 22367
Q ss_pred HHHHcCCeeEEEEEcCCC--ChHHHHHHHhhcCCeeeeeCCc--chHHHHHHHhcC
Q 022374 168 FSAQRSMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQQL--DGLFQYLLTIFG 219 (298)
Q Consensus 168 faAqk~~I~Idv~~L~~~--e~~~LqQa~~~T~G~Y~~~~~~--~~L~q~Ll~~~~ 219 (298)
..|.+++|.||++..+.. +..-|+.+++.|||..+...+- ..+.+-|...|.
T Consensus 340 ~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~~ 395 (769)
T 2nut_A 340 NRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFT 395 (769)
T ss_dssp HHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTC
T ss_pred HHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhHHHHHHHHHh
Confidence 778889999999998633 5688999999999998887653 345565555553
No 34
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=93.85 E-value=0.54 Score=46.19 Aligned_cols=149 Identities=8% Similarity=-0.017 Sum_probs=76.7
Q ss_pred CCCCeEEEEEeCCccccc-c--C--CccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCC
Q 022374 11 DDVSLVVVLLDTNPFFWS-S--S--SLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGR 85 (298)
Q Consensus 11 ~~~s~L~iIlD~s~~~w~-~--~--~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~ 85 (298)
+..--++|+||+|.+|.. . . .....++. ..+.|+ ......+++||+..+ ... ..|.+...
T Consensus 360 ~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~A-a~la~~----~~r~~d~v~lv~Fs~-~~~-~~~~~~~~-------- 424 (535)
T 2nvo_A 360 PANTRHLLALDVSGSMTCGDVAGVPGLTPNMAA-AAMSLI----ALRTEPDALTMGFAE-QFR-PLGITPRD-------- 424 (535)
T ss_dssp CCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHH-HHHHHH----HHHHSSEEEEEEEBS-SEE-ECCCCTTC--------
T ss_pred CCCceEEEEEECCccccCCCCCCCCcccHHHHH-HHHHHH----HcCcCCceEEEEECC-cce-EcCCCcch--------
Confidence 344567777899999976 3 1 12222211 222333 333444788888765 222 22333221
Q ss_pred chhHHHHHHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcC-CCCChhhhHHH
Q 022374 86 MPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGS-PDGPEQYVAIM 164 (298)
Q Consensus 86 ~~~~~~~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S-~d~~~qyi~lm 164 (298)
. +.+.|+.+ .... .+.+.+..+|..| .+. .....+|++|+=. .+.+ .+..+
T Consensus 425 --~----l~~~l~~l-~~~~----------~ggTdi~~~l~~a----~~~-----~~~~~~vIliTD~~~~~g--~~~~~ 476 (535)
T 2nvo_A 425 --T----LESAMQKA-QSVS----------FGGTDCAQPILWA----AQE-----RLDVDTFVVYTDNETWAG--QVHPT 476 (535)
T ss_dssp --C----HHHHHHHT-CCSS----------BCCCCTTHHHHHH----HHT-----TCCCSEEEEEESSCCCCC--SSCHH
T ss_pred --h----HHHHHHHH-hhCC----------CCCccHHHHHHHH----HHh-----cCCCCEEEEEeCCCccCC--CCCHH
Confidence 1 33444433 2111 1345555555433 332 1234567777722 2111 12334
Q ss_pred HHHHHHHcC---CeeEEEEEcCCC------------------ChHHHHHHHhhcCCeee
Q 022374 165 NAIFSAQRS---MVPIDSCYLGAQ------------------NSAFLQQASYITGGVHH 202 (298)
Q Consensus 165 N~ifaAqk~---~I~Idv~~L~~~------------------e~~~LqQa~~~T~G~Y~ 202 (298)
..+..+++. ++++=++.++.. +-.+|+.+++.|+|.|+
T Consensus 477 ~al~~~r~~~~~~~klv~i~l~~~~~~~~~~~~~~~~~i~g~se~~l~~Ia~~~~G~~~ 535 (535)
T 2nvo_A 477 VALDQYAQKMGRAPKLIVVGLTATEFSIADPQRRDMLDVVGFDAAAPNVMTAFARGEVL 535 (535)
T ss_dssp HHHHHHHHHHSCCCEEEEEETTCSCCCCSCTTCSSEEEEEECCTTHHHHHHHHHTTCC-
T ss_pred HHHHHHHHhhCCCCeEEEEeccCCCcccCCCCCCCceeeeCCCHHHHHHHHHHhCCCcC
Confidence 566666654 788888888631 12579999999999885
No 35
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=93.46 E-value=1.1 Score=47.13 Aligned_cols=173 Identities=14% Similarity=0.135 Sum_probs=97.1
Q ss_pred CCCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCC-------------
Q 022374 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGN------------- 78 (298)
Q Consensus 12 ~~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~------------- 78 (298)
.+-..+.|||++...-+. .-+..+.++|+.-|...=...+.-+||+|+... . --+|..+....
T Consensus 302 ~ppvyvFvIDvS~~av~~--g~l~~l~~sI~~~L~~LP~~~~~~~VGlITFds-~-Vh~y~l~~~~~g~k~~~~q~qmlv 377 (926)
T 1m2v_B 302 PPATYCFLIDVSQSSIKS--GLLATTINTLLQNLDSIPNHDERTRISILCVDN-A-IHYFKIPLDSENNEESADQINMMD 377 (926)
T ss_dssp CCCBEEEEEECSHHHHHS--CHHHHHHHHHHHTTTTSCCTTSCCEECEEEESS-S-EEEEECCCC---------CCEEEE
T ss_pred CCcEEEEEEECCHHHHhh--hHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECC-E-EEEEecCCcccCCcccccchhhcc
Confidence 466889999998754332 124444444444332111112246799988753 2 34555443211
Q ss_pred --CCCC------C------CCchhHHHHHHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCC
Q 022374 79 --QSVG------N------GRMPSLCATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQ 144 (298)
Q Consensus 79 --~~~~------~------~~~~~~~~~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~ 144 (298)
+..+ . .+-.+....+++.|....... ...+..+..||+.|+..+.. .-
T Consensus 378 vsdl~d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~----------~~~~~~~G~AL~aA~~lL~~--------~G 439 (926)
T 1m2v_B 378 IADLEEPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSN----------LITNFALGPALKSAYHLIGG--------VG 439 (926)
T ss_dssp ECCCSSCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSC----------CCCCCCHHHHHHHHHHHHTT--------TC
T ss_pred ccccccccCCCcccccccHHHHHHHHHHHHHhhhhhhcCC----------CCCCccHHHHHHHHHHHHHh--------hC
Confidence 0000 0 000111223444444432221 13467788899999888763 24
Q ss_pred cEEEEEEcCC-CCC----------------hhhh--------HHHHHHHHHHcCCeeEEEEEcCCC--ChHHHHHHHhhc
Q 022374 145 PRILCLQGSP-DGP----------------EQYV--------AIMNAIFSAQRSMVPIDSCYLGAQ--NSAFLQQASYIT 197 (298)
Q Consensus 145 ~rILii~~S~-d~~----------------~qyi--------~lmN~ifaAqk~~I~Idv~~L~~~--e~~~LqQa~~~T 197 (298)
.||+++.+++ ..+ .+.. -+-+....|.+++|.||++..+.. +..-++.++..|
T Consensus 440 GrI~~F~sg~Pt~GpG~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~T 519 (926)
T 1m2v_B 440 GKIIVVSGTLPNLGIGKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFT 519 (926)
T ss_dssp EEEEEEESSCCCSSTTCCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTT
T ss_pred CEEEEEecCCCCCCCCcccccccccccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcC
Confidence 6999998763 100 0100 123466778889999999998533 678899999999
Q ss_pred CCeeeeeCC
Q 022374 198 GGVHHKPQQ 206 (298)
Q Consensus 198 ~G~Y~~~~~ 206 (298)
||.-+...+
T Consensus 520 GG~v~~y~~ 528 (926)
T 1m2v_B 520 AGQTHFYPG 528 (926)
T ss_dssp TCCEEEEES
T ss_pred CceEEEcCC
Confidence 999776643
No 36
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=92.54 E-value=0.062 Score=35.40 Aligned_cols=24 Identities=33% Similarity=0.773 Sum_probs=20.4
Q ss_pred eeEcCCCCeeec----------CCCC--CCcccccc
Q 022374 252 GYICSVCLSIYC----------KHLK--KCSTCGSV 275 (298)
Q Consensus 252 GyvCp~Clsi~C----------~~~~--~C~~C~~~ 275 (298)
-|+|++|+-+|= ++|. .||+||..
T Consensus 4 ~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 4 KYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp CEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 499999999997 5676 89999974
No 37
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=92.15 E-value=0.09 Score=43.58 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=27.4
Q ss_pred CcccceeEcCCCCeeecCCCC--CCccccccccccc
Q 022374 247 NTIDMGYICSVCLSIYCKHLK--KCSTCGSVFGQAQ 280 (298)
Q Consensus 247 ~~~~~GyvCp~Clsi~C~~~~--~C~~C~~~f~~~~ 280 (298)
+.....|.|..|+.+|=...+ .||.||..+...|
T Consensus 127 ~~~~~~y~C~~Cg~~~~~~~~~~~Cp~CG~~~~~~~ 162 (165)
T 2lcq_A 127 KVIKWRYVCIGCGRKFSTLPPGGVCPDCGSKVKLIP 162 (165)
T ss_dssp SCCCCCEEESSSCCEESSCCGGGBCTTTCCBEEECC
T ss_pred ccccEEEECCCCCCcccCCCCCCcCCCCCCcceeCC
Confidence 345567999999999987665 8999999876555
No 38
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=92.14 E-value=12 Score=38.36 Aligned_cols=176 Identities=14% Similarity=0.049 Sum_probs=96.5
Q ss_pred CCCeEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCC---CEEEEEEecCceEEEecCCCCCCCC-----CCC
Q 022374 12 DVSLVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLN---QVVVIATGYNSCDYVYDSSSTGNQS-----VGN 83 (298)
Q Consensus 12 ~~s~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N---~l~VIa~~~~~a~~lyp~~~~~~~~-----~~~ 83 (298)
.|-..+.|||++...-+. ..++.+..-|.+-|..-|.| +||+|+... .--+|.......+. .+.
T Consensus 159 ~pp~yvFvIDvs~~a~~~------g~l~~~~~sl~~~L~~lp~~~~~~VG~ITfd~--~vh~y~l~~~~~~~qmlvv~dl 230 (751)
T 3eh1_A 159 QPAVYLFVLDVSHNAVEA------GYLTILCQSLLENLDKLPGDSRTRIGFMTFDS--TIHFYNLQEGLSQPQMLIVSDI 230 (751)
T ss_dssp CCCEEEEEEECSHHHHHH------THHHHHHHHHHHHTTTSSCCTTCEEEEEEESS--SEEEEECCTTCSSCEEEEESCT
T ss_pred CCcEEEEEEEccHhhhhh------hHHHHHHHHHHHHHHhcCCCcCcEEEEEEeCC--EEEEEECCCCcccceeeccccc
Confidence 355778899998744332 13334444444555555555 699998763 24456655432100 000
Q ss_pred C----Cc-hhHH---HHHHHHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCC-
Q 022374 84 G----RM-PSLC---ATLLQNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSP- 154 (298)
Q Consensus 84 ~----~~-~~~~---~~i~~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~- 154 (298)
. .. +.++ .+..+.|.+++++-+..-.++ ......+..||+.|...+.. .-.||+++.+++
T Consensus 231 ~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~---~~~~~~~G~AL~aA~~ll~~--------~GGrI~~F~sg~p 299 (751)
T 3eh1_A 231 DDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTNT---RETHSALGPALQAAFKLMSP--------TGGRVSVFQTQLP 299 (751)
T ss_dssp TCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTTC---SCCCCCHHHHHHHHHHHHTT--------TCEEEEEEECSCC
T ss_pred cccCCCChhhhcccHHHHHHHHHHHHHhhhHhhcCC---CCCccchHHHHHHHHHHhhc--------CCCEEEEEecCCC
Confidence 0 00 1110 111222222222211111100 12356778889888887752 346999988662
Q ss_pred CCC----------h-------------hhhHHHHHHHHHHcCCeeEEEEEcCCC--ChHHHHHHHhhcCCeeeeeCC
Q 022374 155 DGP----------E-------------QYVAIMNAIFSAQRSMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQQ 206 (298)
Q Consensus 155 d~~----------~-------------qyi~lmN~ifaAqk~~I~Idv~~L~~~--e~~~LqQa~~~T~G~Y~~~~~ 206 (298)
..+ . +.--+-+....+.+++|.||++..+.. +..-++.++..|||.-+...+
T Consensus 300 t~GpG~l~~r~~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~ 376 (751)
T 3eh1_A 300 SLGAGLLQSREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPS 376 (751)
T ss_dssp CSSTTCCCCCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTT
T ss_pred CCCCCccccccccccCCCchhhhhhcchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCC
Confidence 110 0 000123466778899999999998532 788999999999998777654
No 39
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=92.13 E-value=0.082 Score=44.43 Aligned_cols=26 Identities=27% Similarity=0.652 Sum_probs=21.6
Q ss_pred cceeEcCCCCeeecC-CCCCCcccccc
Q 022374 250 DMGYICSVCLSIYCK-HLKKCSTCGSV 275 (298)
Q Consensus 250 ~~GyvCp~Clsi~C~-~~~~C~~C~~~ 275 (298)
...|+|++|+-++=. .|..||+||..
T Consensus 136 ~~~~~C~~CG~i~~~~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 136 KKVYICPICGYTAVDEAPEYCPVCGAP 162 (170)
T ss_dssp SCEEECTTTCCEEESCCCSBCTTTCCB
T ss_pred CCeeEeCCCCCeeCCCCCCCCCCCCCC
Confidence 457999999999874 56799999963
No 40
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=89.82 E-value=0.13 Score=44.00 Aligned_cols=24 Identities=17% Similarity=0.420 Sum_probs=21.0
Q ss_pred eeEcCCCCeeec--CCCCCCcccccc
Q 022374 252 GYICSVCLSIYC--KHLKKCSTCGSV 275 (298)
Q Consensus 252 GyvCp~Clsi~C--~~~~~C~~C~~~ 275 (298)
-|+|++|+-+|= +.|..||+||..
T Consensus 155 ~~~C~~CG~~~~g~~~p~~CP~C~~~ 180 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAPELCPACAHP 180 (191)
T ss_dssp EEEETTTCCEEEEEECCSBCTTTCCB
T ss_pred eEEECCCCCEeeCCCCCCCCCCCcCC
Confidence 699999999985 577899999984
No 41
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=89.56 E-value=0.19 Score=34.31 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=20.4
Q ss_pred eeEcCCCCeeecC-----------------CCC--CCcccccc
Q 022374 252 GYICSVCLSIYCK-----------------HLK--KCSTCGSV 275 (298)
Q Consensus 252 GyvCp~Clsi~C~-----------------~~~--~C~~C~~~ 275 (298)
.|+|++|+-+|=. +|. .||+||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 3 KWQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGVG 45 (55)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCCC
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 4999999999975 666 89999973
No 42
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=89.03 E-value=0.2 Score=36.91 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=20.8
Q ss_pred ceeEcCCCCeeecC-----------------CCC--CCcccccc
Q 022374 251 MGYICSVCLSIYCK-----------------HLK--KCSTCGSV 275 (298)
Q Consensus 251 ~GyvCp~Clsi~C~-----------------~~~--~C~~C~~~ 275 (298)
.-|+|++|.-+|=. +|. .||+||..
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred ceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCCC
Confidence 36999999999974 665 79999973
No 43
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=88.43 E-value=2.3 Score=44.53 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=41.6
Q ss_pred CCCCCeEEEEEeCCccccccC---CccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEec
Q 022374 10 SDDVSLVVVLLDTNPFFWSSS---SLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGY 64 (298)
Q Consensus 10 ~~~~s~L~iIlD~s~~~w~~~---~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~ 64 (298)
...+--+++|||.|..|...+ ..|+..+-+.+..|+. +|..++..+++||....
T Consensus 221 ~~~~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld-~L~~~~~drVgLV~Fs~ 277 (893)
T 2ww8_A 221 KSVPLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLID-KITSDSENRVALVTYAS 277 (893)
T ss_dssp TTCCEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHH-HHHTSTTCEEEEEEESS
T ss_pred cCCCccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHH-HhhcCCCcEEEEEEecC
Confidence 345667999999999998763 2378777777888884 45557899999999875
No 44
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=87.59 E-value=0.27 Score=42.36 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=20.4
Q ss_pred ceeEcCCCCeeecCC-CCCCcccccc
Q 022374 251 MGYICSVCLSIYCKH-LKKCSTCGSV 275 (298)
Q Consensus 251 ~GyvCp~Clsi~C~~-~~~C~~C~~~ 275 (298)
.-|+|++|+-+|=.. |-.||+||..
T Consensus 170 ~~~~C~~CG~i~~g~~p~~CP~C~~~ 195 (202)
T 1yuz_A 170 KFHLCPICGYIHKGEDFEKCPICFRP 195 (202)
T ss_dssp CEEECSSSCCEEESSCCSBCTTTCCB
T ss_pred cEEEECCCCCEEcCcCCCCCCCCCCC
Confidence 369999999998754 4599999974
No 45
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=87.53 E-value=0.29 Score=33.27 Aligned_cols=24 Identities=38% Similarity=0.755 Sum_probs=19.5
Q ss_pred eeEcCCCCeeecC-----------------CCC--CCcccccc
Q 022374 252 GYICSVCLSIYCK-----------------HLK--KCSTCGSV 275 (298)
Q Consensus 252 GyvCp~Clsi~C~-----------------~~~--~C~~C~~~ 275 (298)
-|+|++|+-+|=+ +|- .||+||..
T Consensus 3 ~y~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 3 KYTCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGVG 45 (54)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred ceECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCCc
Confidence 4999999999973 454 79999975
No 46
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=87.31 E-value=0.28 Score=33.04 Aligned_cols=24 Identities=29% Similarity=0.686 Sum_probs=19.7
Q ss_pred eeEcCCCCeeecC-----------------CCC--CCcccccc
Q 022374 252 GYICSVCLSIYCK-----------------HLK--KCSTCGSV 275 (298)
Q Consensus 252 GyvCp~Clsi~C~-----------------~~~--~C~~C~~~ 275 (298)
-|+|.+|.-+|=. +|. .||+||..
T Consensus 2 ~~~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 44 (52)
T 1yk4_A 2 KLSCKICGYIYDEDEGDPDNGISPGTKFEDLPDDWVCPLCGAP 44 (52)
T ss_dssp EEEESSSSCEEETTTCBGGGTBCTTCCGGGSCTTCBCTTTCCB
T ss_pred cEEeCCCCeEECCCcCCcccCcCCCCCHhHCCCCCcCCCCCCC
Confidence 4999999999973 565 79999973
No 47
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=86.04 E-value=0.37 Score=35.97 Aligned_cols=24 Identities=33% Similarity=0.830 Sum_probs=20.0
Q ss_pred ceeEcCCCCeeec-----------------CCCC--CCccccc
Q 022374 251 MGYICSVCLSIYC-----------------KHLK--KCSTCGS 274 (298)
Q Consensus 251 ~GyvCp~Clsi~C-----------------~~~~--~C~~C~~ 274 (298)
.-|+|.+|+-+|= ++|. .||+||.
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 4699999999997 4555 7999997
No 48
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=86.04 E-value=0.4 Score=34.31 Aligned_cols=24 Identities=33% Similarity=0.663 Sum_probs=20.2
Q ss_pred eeEcCCCCeeecC-----------------CCC--CCcccccc
Q 022374 252 GYICSVCLSIYCK-----------------HLK--KCSTCGSV 275 (298)
Q Consensus 252 GyvCp~Clsi~C~-----------------~~~--~C~~C~~~ 275 (298)
-|+|++|.-+|=. +|. .||+||..
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCCC
Confidence 5999999999973 565 79999983
No 49
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=85.74 E-value=0.46 Score=31.96 Aligned_cols=24 Identities=33% Similarity=0.768 Sum_probs=19.3
Q ss_pred eeEcCCCCeeecC-----------------CCC--CCcccccc
Q 022374 252 GYICSVCLSIYCK-----------------HLK--KCSTCGSV 275 (298)
Q Consensus 252 GyvCp~Clsi~C~-----------------~~~--~C~~C~~~ 275 (298)
-|+|++|.-+|=+ +|. .||+||..
T Consensus 3 ~y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp CEECSSSCCCCCTTTCCTTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred cEEeCCCCeEEcCCcCCcccCcCCCCchHHCCCCCcCCCCCCc
Confidence 4999999999963 455 79999973
No 50
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=82.56 E-value=14 Score=37.34 Aligned_cols=56 Identities=9% Similarity=0.068 Sum_probs=36.4
Q ss_pred HHHHHHHHHHcCCeeEEEEEcCCCChHHHHHHHhhcCCeeeeeCCcc--hHHHHHHHhc
Q 022374 162 AIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLD--GLFQYLLTIF 218 (298)
Q Consensus 162 ~lmN~ifaAqk~~I~Idv~~L~~~e~~~LqQa~~~T~G~Y~~~~~~~--~L~q~Ll~~~ 218 (298)
.+-.....+.+++|.+=+.+- .....+.+++++...|.+.-....+ ..++++...+
T Consensus 291 Si~ql~~~l~~~~i~~ifavt-~~~~~~y~~l~~~i~~s~v~~l~~dSsni~~li~~~y 348 (690)
T 3fcs_B 291 SLGLMTEKLSQKNINLIFAVT-ENVVNLYQNYSELIPGTTVGVLSMDSSNVLQLIVDAY 348 (690)
T ss_dssp CHHHHHHHHHHTTCEEEEEEE-GGGHHHHHHHHHHSTTCEEEEECTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCeEEEEEe-CCchhhHHHHHhhcCCceeeeeccccHHHHHHHHHHH
Confidence 355677788888997644444 4566788888877776665554333 3666665544
No 51
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=78.27 E-value=1.9 Score=28.79 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=21.6
Q ss_pred ceeEcCCCCeeecCCCCCCccccccccccc
Q 022374 251 MGYICSVCLSIYCKHLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp~Clsi~C~~~~~C~~C~~~f~~~~ 280 (298)
--++||.|.+..-.--..|..||.+ ..-|
T Consensus 13 ~k~iCpkC~a~~~~gaw~CrKCG~~-~lr~ 41 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKKCRKCGYK-RLRP 41 (51)
T ss_dssp SEEECTTTCCEECTTCSSCSSSSSC-CCEE
T ss_pred CCccCCCCCCcCCCCceecCCCCCc-cccc
Confidence 3589999999944444699999988 4444
No 52
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=77.59 E-value=1 Score=31.09 Aligned_cols=33 Identities=30% Similarity=0.901 Sum_probs=22.5
Q ss_pred eeeeccC-cccce-eEcCCCCeeecC--------CCCCCcccc
Q 022374 241 SCFCHKN-TIDMG-YICSVCLSIYCK--------HLKKCSTCG 273 (298)
Q Consensus 241 ~C~CH~~-~~~~G-yvCp~Clsi~C~--------~~~~C~~C~ 273 (298)
.||-..+ ..+.+ |.|+.|...||- .--.||.|.
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTTC
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCCC
Confidence 4665543 34555 999999999993 234677773
No 53
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=77.34 E-value=1.2 Score=34.28 Aligned_cols=32 Identities=16% Similarity=0.351 Sum_probs=26.7
Q ss_pred ccceeEcCCCCeeec---CCCCCCccccccccccc
Q 022374 249 IDMGYICSVCLSIYC---KHLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 249 ~~~GyvCp~Clsi~C---~~~~~C~~C~~~f~~~~ 280 (298)
.-.-|.|-.|+-.|+ ..|..||.|+...+..|
T Consensus 64 ~v~p~~C~~CG~~F~~~~~kPsrCP~CkSe~Ie~P 98 (105)
T 2gmg_A 64 LIKPAQCRKCGFVFKAEINIPSRCPKCKSEWIEEP 98 (105)
T ss_dssp EECCCBBTTTCCBCCCCSSCCSSCSSSCCCCBCCC
T ss_pred EEECcChhhCcCeecccCCCCCCCcCCCCCccCCc
Confidence 334589999999997 45789999999998877
No 54
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=76.49 E-value=3.4 Score=41.90 Aligned_cols=43 Identities=2% Similarity=-0.157 Sum_probs=29.3
Q ss_pred HHHHHHHHHcCCeeEEEEEcCCCChHHHHHHHhhcCCeeeeeCC
Q 022374 163 IMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQ 206 (298)
Q Consensus 163 lmN~ifaAqk~~I~Idv~~L~~~e~~~LqQa~~~T~G~Y~~~~~ 206 (298)
+-.....+.+++|.+=+.+- .......+++++.-.|.+.....
T Consensus 282 ~~ql~~~l~~~~I~~ifavt-~~~~~~y~~l~~~i~~s~v~~L~ 324 (687)
T 3k6s_B 282 VGQLAHKLAENNIQPIFAVT-SRMVKTYEKLTEIIPKSAVGELS 324 (687)
T ss_dssp GGGHHHHHHHTTCBCCEEEC-GGGHHHHHHHHHHSSSCCEEECC
T ss_pred HHHHHHHHHHcCCeEEEEEe-ccchhhHHHHHhhcCCceeeeec
Confidence 44566777888887655444 45667888888877776666554
No 55
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=76.15 E-value=1.2 Score=27.30 Aligned_cols=10 Identities=40% Similarity=1.288 Sum_probs=8.1
Q ss_pred eeEcCCCCee
Q 022374 252 GYICSVCLSI 261 (298)
Q Consensus 252 GyvCp~Clsi 261 (298)
||+||.|..-
T Consensus 5 GFiCP~C~~~ 14 (34)
T 3mjh_B 5 GFICPQCMKS 14 (34)
T ss_dssp EEECTTTCCE
T ss_pred ccCCcHHHHH
Confidence 8999998754
No 56
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=73.58 E-value=43 Score=28.68 Aligned_cols=170 Identities=8% Similarity=0.009 Sum_probs=87.9
Q ss_pred eEEEEEeCCccccccCCccHHHHHHHHHHHHHHHHcCCCCCCEEEEEEecCceEEEecCCCCCCCCCCCCCchhHHHHHH
Q 022374 15 LVVVLLDTNPFFWSSSSLSFSQFLTHVLAFLNAILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLL 94 (298)
Q Consensus 15 ~L~iIlD~s~~~w~~~~~~l~~~l~~l~~Fln~~l~~n~~N~l~VIa~~~~~a~~lyp~~~~~~~~~~~~~~~~~~~~i~ 94 (298)
=||.++|+|-.|-.. -.++......+..-+.. .+...++++.+..++.-+...|.+.+. ....
T Consensus 5 Dl~fl~D~S~SM~~d-i~~lk~~~~~l~~~l~~---~~~~~r~Gfg~f~Dk~~~~~l~lT~d~-------------~~F~ 67 (212)
T 2iue_A 5 DLYFLMGLSGSAQGH-LSNVQTLGSDLLKALNE---ISRSGRIGFGSIVNMTFQHILKLTADS-------------SQFQ 67 (212)
T ss_dssp EEEEEEECCGGGTTT-HHHHHHHHHHHHHHHHH---HCSCEEEEEEEESSSCEEEEEEEESCH-------------HHHH
T ss_pred EEEEEEeCCCcchhH-HHHHHHHHHHHHHHHHh---hCcCceEEEEEEEcCcceecCCcCCCH-------------HHHH
Confidence 389999999988766 12344444444444443 356789999887766333444444332 1223
Q ss_pred HHHHHHHhhhhccCCCCCCccccccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcC--C----CC------------
Q 022374 95 QNLEEFMNKDEQLGKQEPEGRIACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGS--P----DG------------ 156 (298)
Q Consensus 95 ~~L~~l~~~~~~~~~~~~~~~~~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S--~----d~------------ 156 (298)
+.+. .....+ + .+..+..+.+ |..|+..-+++. =.. .+|+||+..- + |.
T Consensus 68 ~~v~----~~~vsg-~---~D~PE~g~da-l~qa~~c~~~i~---Wr~-a~rllvl~TDa~~H~~gDg~l~gi~~pnd~~ 134 (212)
T 2iue_A 68 RELR----KQLVSG-K---LATPKGQLDA-VVQVAICLGEIG---WRN-GTRFLVLVTDNDFHLAKDKTLGTRQNTSDGR 134 (212)
T ss_dssp HHHH----TCCCCC-C---SSSSBCHHHH-HHHHHHCHHHHT---CCS-SEEEEEEECSSCBCCTTGGGGGTCCSCCCSS
T ss_pred HHHh----hccccC-C---CCCCchHHHH-HHHHHHhhhhcc---cCC-ccEEEEEECcCCccccCCccccccccCCccc
Confidence 3332 211111 0 0123455554 445554334331 123 7788888732 1 11
Q ss_pred ------------ChhhhHHHHHHHHHHcCCeeEEEEEcCCCChHHHHHHHhhcCCeeeeeCCc--chHHHHHH
Q 022374 157 ------------PEQYVAIMNAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQL--DGLFQYLL 215 (298)
Q Consensus 157 ------------~~qyi~lmN~ifaAqk~~I~Idv~~L~~~e~~~LqQa~~~T~G~Y~~~~~~--~~L~q~Ll 215 (298)
..+|=.+-.....+.++||.+-..+= +......+++++...|...-.... ...++++.
T Consensus 135 chl~~g~y~~s~~~Dyps~~q~~~~l~~~~i~~ifavt-~~~~~~Y~~l~~~i~~s~v~~L~~dSsni~~li~ 206 (212)
T 2iue_A 135 CHLDDGMYRSRGEPDYQSVVQLASKLAENNIQPIFVVP-SRMVKTYEKLTTFIPKLTIGELSDDSSNVAQLIR 206 (212)
T ss_dssp CCBSSSBBGGGGSSCCCCHHHHHHHHHHHTCEEEEEEE-HHHHHHHHHHHHHSTTCEEEEESSCCHHHHHHHH
T ss_pred cccCCCeeccCcccCCCCHHHHHHHHHhcCCcEEEEEc-cchhHHHHHHHHHcccceeeeecCCcHHHHHHHH
Confidence 01344444566666667777655444 345556777777766665544332 23445443
No 57
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=72.50 E-value=2.5 Score=28.12 Aligned_cols=31 Identities=19% Similarity=0.570 Sum_probs=24.6
Q ss_pred cceeEcCCCCeeec-----------CCCCCCccccccccccc
Q 022374 250 DMGYICSVCLSIYC-----------KHLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 250 ~~GyvCp~Clsi~C-----------~~~~~C~~C~~~f~~~~ 280 (298)
...|.|+.|...|- +-|-.|+.||..|....
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~~~ 53 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEEDE 53 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEECT
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCccccCc
Confidence 45799999998765 23458999999998766
No 58
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=72.32 E-value=3.3 Score=29.47 Aligned_cols=32 Identities=25% Similarity=0.546 Sum_probs=24.7
Q ss_pred ccceeEcCCCCeeecCC---CCCCccccccccccc
Q 022374 249 IDMGYICSVCLSIYCKH---LKKCSTCGSVFGQAQ 280 (298)
Q Consensus 249 ~~~GyvCp~Clsi~C~~---~~~C~~C~~~f~~~~ 280 (298)
..+-|+|+.|...|-.. ...|+-||.+..-..
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~irCp~CG~RILyK~ 59 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAVRCKDCGHRILLKA 59 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTTCCSSSCCCCCBCC
T ss_pred ceEEEECCCCCCcceeCCCCCccCCCCCceEeEec
Confidence 56789999999998754 468999999544333
No 59
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=70.22 E-value=2.1 Score=31.22 Aligned_cols=29 Identities=21% Similarity=0.564 Sum_probs=24.2
Q ss_pred eeEcCCCCeeecC--------------CCCCCccccccccccc
Q 022374 252 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 252 GyvCp~Clsi~C~--------------~~~~C~~C~~~f~~~~ 280 (298)
-|+|++|...|-. -|-.|..|+..|....
T Consensus 28 ~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~ 70 (85)
T 2lv2_A 28 CHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSP 70 (85)
T ss_dssp TEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHH
T ss_pred CEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHH
Confidence 5999999999984 3458999999998665
No 60
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=69.93 E-value=2.3 Score=27.83 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=24.6
Q ss_pred eEcCCCCeeecC-----CC-CCCccccccccccccCC
Q 022374 253 YICSVCLSIYCK-----HL-KKCSTCGSVFGQAQTQS 283 (298)
Q Consensus 253 yvCp~Clsi~C~-----~~-~~C~~C~~~f~~~~~~~ 283 (298)
|.|=+|+..|-. +| ..||.||-+.....+.|
T Consensus 4 Y~C~rCg~~fs~~el~~lP~IrCpyCGyrii~KvR~p 40 (48)
T 4ayb_P 4 YRCGKCWKTFTDEQLKVLPGVRCPYCGYKIIFMVRKP 40 (48)
T ss_dssp -CCCCTTTTCCCCCSCCCSSSCCTTTCCSCEECCCCC
T ss_pred EEeeccCCCccHHHHhhCCCcccCccCcEEEEEecCC
Confidence 889999999885 34 58999999988877554
No 61
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=67.25 E-value=1.1e+02 Score=31.03 Aligned_cols=99 Identities=16% Similarity=0.104 Sum_probs=66.3
Q ss_pred cccchHHHHHHHHHHHHHhhhcCCCCCCcEEEEEEcCCCC-----------C----h---------hhh-----HHHHHH
Q 022374 117 ACSLLSGSLSMALCYIQRVFRSGLLHPQPRILCLQGSPDG-----------P----E---------QYV-----AIMNAI 167 (298)
Q Consensus 117 ~~s~L~~aLs~ALc~inr~~~~~~~~~~~rILii~~S~d~-----------~----~---------qyi-----~lmN~i 167 (298)
....+..||+.|...+.... ...-.||+++.+++-. . . .|. -+-+..
T Consensus 258 ~~~~~G~Al~~A~~ll~~~~----~~~GGrI~~F~sg~pt~GpG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la 333 (768)
T 1m2o_A 258 PLRATGSALNIASLLLQGCY----KNIPARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIA 333 (768)
T ss_dssp CCCCHHHHHHHHHHHHHHHC----TTSCCEEEEEESSCCCSSSSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHhhcc----CCCCcEEEEEeCCCCCCCCccccccccccccccccccccchhhhcCchHHHHHHHH
Confidence 45678889999998887431 2345799999876310 0 0 010 112356
Q ss_pred HHHHcCCeeEEEEEcCCC--ChHHHHHHHhhcCCeeeeeCC--cchHHHHHHHhcC
Q 022374 168 FSAQRSMVPIDSCYLGAQ--NSAFLQQASYITGGVHHKPQQ--LDGLFQYLLTIFG 219 (298)
Q Consensus 168 faAqk~~I~Idv~~L~~~--e~~~LqQa~~~T~G~Y~~~~~--~~~L~q~Ll~~~~ 219 (298)
..|.+++|.||++..+.. +..-++.++..|||.-+...+ ...|.+-|...|.
T Consensus 334 ~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l~r~l~ 389 (768)
T 1m2o_A 334 QRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFA 389 (768)
T ss_dssp HHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHHHTTC
T ss_pred HHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHHHHHHHHHHh
Confidence 677889999999998633 678999999999998666554 3346666655553
No 62
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=66.53 E-value=2.9 Score=28.30 Aligned_cols=29 Identities=24% Similarity=0.778 Sum_probs=23.8
Q ss_pred eeEcCCCCeeecC--------------CCCCCccccccccccc
Q 022374 252 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 252 GyvCp~Clsi~C~--------------~~~~C~~C~~~f~~~~ 280 (298)
-|.|+.|.-.|-. -|=.|..||..|....
T Consensus 4 py~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~~~ 46 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQS 46 (60)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESSHH
T ss_pred CccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCCHH
Confidence 4999999999984 4568999999998654
No 63
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=66.44 E-value=1.6 Score=28.59 Aligned_cols=30 Identities=23% Similarity=0.473 Sum_probs=20.9
Q ss_pred ceeEcCCCCe-eec-CC---CCCCccccccccccc
Q 022374 251 MGYICSVCLS-IYC-KH---LKKCSTCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp~Cls-i~C-~~---~~~C~~C~~~f~~~~ 280 (298)
.-++||.|.+ -+- +. --+|..||+.+....
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e~~ 38 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEENI 38 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCCCC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcccccc
Confidence 4578999987 222 11 158999999987655
No 64
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=64.08 E-value=2.4 Score=29.21 Aligned_cols=27 Identities=30% Similarity=0.801 Sum_probs=19.5
Q ss_pred eee-eeccC-cccceeEcCCCCeeecCCC
Q 022374 240 ASC-FCHKN-TIDMGYICSVCLSIYCKHL 266 (298)
Q Consensus 240 a~C-~CH~~-~~~~GyvCp~Clsi~C~~~ 266 (298)
..| .|+.. .....|.||+|...||.+.
T Consensus 12 ~~C~vC~~~~~~~akY~CPrC~~rYCSl~ 40 (59)
T 1x4s_A 12 GPCGFCPAGEVQPARYTCPRCNAPYCSLR 40 (59)
T ss_dssp EEECSSCTTCCEEECEECTTTCCEESSHH
T ss_pred CcCcCCCCCcCCCccccCcCCCCCccChH
Confidence 456 45432 3567899999999999863
No 65
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=63.54 E-value=4.6 Score=27.86 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=21.0
Q ss_pred eEcCCCCeeecCCCCCCccccccccccc
Q 022374 253 YICSVCLSIYCKHLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 253 yvCp~Clsi~C~~~~~C~~C~~~f~~~~ 280 (298)
-+||.|....= ...|+.||....++-
T Consensus 7 r~C~~CgvYTL--k~~CP~CG~~T~~~h 32 (60)
T 2apo_B 7 KKCPKCGLYTL--KEICPKCGEKTVIPK 32 (60)
T ss_dssp EECTTTCCEES--SSBCSSSCSBCBCCC
T ss_pred eeCCCCCCEec--cccCcCCCCcCCCCC
Confidence 57999976654 678999999988775
No 66
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=63.24 E-value=7.3 Score=24.75 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=21.9
Q ss_pred ccceeEcCCCCeeecC---------------CCCCCccccccccc
Q 022374 249 IDMGYICSVCLSIYCK---------------HLKKCSTCGSVFGQ 278 (298)
Q Consensus 249 ~~~GyvCp~Clsi~C~---------------~~~~C~~C~~~f~~ 278 (298)
...-|.|+.|...|-. .|-.|..|+..|.+
T Consensus 9 ~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp SSCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 3446999999887752 24589999988864
No 67
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=62.60 E-value=2.7 Score=26.79 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=21.4
Q ss_pred eeEcCCCCeeecC--------------CCCCCccccccccccc
Q 022374 252 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 252 GyvCp~Clsi~C~--------------~~~~C~~C~~~f~~~~ 280 (298)
.|.|+.|...|-. .|-.|+.|+..|....
T Consensus 4 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 46 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKT 46 (57)
T ss_dssp -CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESSHH
T ss_pred CccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCCHH
Confidence 5889999888763 3457999998887543
No 68
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.34 E-value=3.6 Score=28.00 Aligned_cols=22 Identities=32% Similarity=0.892 Sum_probs=17.5
Q ss_pred eee-eccCcccceeEcCCCCeeecCC
Q 022374 241 SCF-CHKNTIDMGYICSVCLSIYCKH 265 (298)
Q Consensus 241 ~C~-CH~~~~~~GyvCp~Clsi~C~~ 265 (298)
.|. |+. ..-|.||+|+..||.+
T Consensus 14 ~C~vC~~---~~kY~CPrC~~~yCSl 36 (56)
T 2yqq_A 14 VCVICLE---KPKYRCPACRVPYCSV 36 (56)
T ss_dssp CCTTTCS---CCSEECTTTCCEESSH
T ss_pred ccCcCcC---CCeeeCCCCCCCeeCH
Confidence 455 543 7789999999999975
No 69
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=57.86 E-value=3.7 Score=26.11 Aligned_cols=28 Identities=29% Similarity=0.542 Sum_probs=19.7
Q ss_pred eEcCCCCeeecC--------------CCCCCccccccccccc
Q 022374 253 YICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 253 yvCp~Clsi~C~--------------~~~~C~~C~~~f~~~~ 280 (298)
|.|+.|...|-. .|-.|+.|+..|....
T Consensus 2 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 43 (57)
T 1bbo_A 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKG 43 (57)
T ss_dssp CBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEESSHH
T ss_pred CcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhcCHH
Confidence 678888777752 2347888888887654
No 70
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=57.14 E-value=5.4 Score=26.92 Aligned_cols=31 Identities=29% Similarity=0.676 Sum_probs=24.0
Q ss_pred cceeEcCCCCeeecC--------------CCCCCccccccccccc
Q 022374 250 DMGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 250 ~~GyvCp~Clsi~C~--------------~~~~C~~C~~~f~~~~ 280 (298)
...|.|+.|...|-. .|-.|+.|+..|....
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~~~~ 56 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNS 56 (72)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEESSHH
T ss_pred CCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccCCHH
Confidence 346999999988863 3458999999998654
No 71
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=56.30 E-value=5.4 Score=26.66 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=23.2
Q ss_pred ceeEcCCCCeeecC--------------CCCCCccccccccccc
Q 022374 251 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp~Clsi~C~--------------~~~~C~~C~~~f~~~~ 280 (298)
.-|.|+.|...|-. .+-.|..|+..|....
T Consensus 8 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~ 51 (70)
T 1x5w_A 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPS 51 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHH
T ss_pred CCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHH
Confidence 45999999988863 2458999999998654
No 72
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.94 E-value=14 Score=24.55 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=27.6
Q ss_pred cceeEcCCCCeeecCCCCCCccccccccccccCC
Q 022374 250 DMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQS 283 (298)
Q Consensus 250 ~~GyvCp~Clsi~C~~~~~C~~C~~~f~~~~~~~ 283 (298)
..++.|+.|..+--...+.|..|++.-..+..+|
T Consensus 9 ~~~W~C~~CT~~N~~~~~~C~~C~~pr~~s~~~p 42 (53)
T 2d9g_A 9 EGYWDCSVCTFRNSAEAFKCMMCDVRKGTSTRKP 42 (53)
T ss_dssp CCCEECSSSCCEECSSCSSCSSSCCCCCCCCCCS
T ss_pred CCCcCCCCCccCCCCCCCccCCCCCcCCccccCc
Confidence 3479999999998888899999999876655444
No 73
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=53.54 E-value=9.8 Score=28.06 Aligned_cols=42 Identities=17% Similarity=0.483 Sum_probs=25.8
Q ss_pred CceeeeeccCcccc--eeEcCCCCeeecCCC--CCCccccccccccc
Q 022374 238 FRASCFCHKNTIDM--GYICSVCLSIYCKHL--KKCSTCGSVFGQAQ 280 (298)
Q Consensus 238 ~~a~C~CH~~~~~~--GyvCp~Clsi~C~~~--~~C~~C~~~f~~~~ 280 (298)
+...|+-.++-+.. ||.| +|.-.||..- +.=.-|..-|+...
T Consensus 24 ~~~rC~~C~kkvgl~~~f~C-rCg~~FC~~HRy~e~H~C~fDyK~~g 69 (85)
T 1wff_A 24 IMKHCFLCGKKTGLATSFEC-RCGNNFCASHRYAEAHGCNYDYKSAG 69 (85)
T ss_dssp CCCBCSSSCCBCSSSSCEEC-TTCCEECTTTCSTGGGTCCSCCSSSC
T ss_pred cCccchhhCCeecccCCeEc-CCCCEecccCCCccCCCCcchhhHHH
Confidence 34567666555554 9999 5999999742 22233444555444
No 74
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=53.36 E-value=4.6 Score=25.99 Aligned_cols=28 Identities=21% Similarity=0.791 Sum_probs=19.9
Q ss_pred eEcCCCCeeecC--------------CCCCCccccccccccc
Q 022374 253 YICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 253 yvCp~Clsi~C~--------------~~~~C~~C~~~f~~~~ 280 (298)
|.|+.|...|-. .|-.|+.|+..|....
T Consensus 3 ~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 44 (60)
T 2adr_A 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRD 44 (60)
T ss_dssp BCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEESSHH
T ss_pred CcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHH
Confidence 778888877752 2346888988887654
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=53.10 E-value=3.1 Score=31.42 Aligned_cols=38 Identities=24% Similarity=0.564 Sum_probs=31.8
Q ss_pred eeEcCCCCeeecCCCCCCccccccccccccCCCCCccc
Q 022374 252 GYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSDEPSAT 289 (298)
Q Consensus 252 GyvCp~Clsi~C~~~~~C~~C~~~f~~~~~~~~~~~~~ 289 (298)
.|.|=.|+++.=.....|++|+-.|....+.+..|+++
T Consensus 47 HYLCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~~PSAP 84 (99)
T 2ko5_A 47 HYLCLNCLTLLLSVSNRCPICKMPLPTKLRPSAAPTAP 84 (99)
T ss_dssp CEEEHHHHHHTCSSSSEETTTTEECCCCSCTTTSCCCC
T ss_pred hhhHHHHHHHHHhhccCCcccCCcCCcceecCcCCCCC
Confidence 59999999999999999999999998777555555553
No 76
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=53.06 E-value=10 Score=27.22 Aligned_cols=42 Identities=19% Similarity=0.434 Sum_probs=26.9
Q ss_pred Cceeeeecc-CcccceeEcCCCCeeecCCC--CCCccccccccccc
Q 022374 238 FRASCFCHK-NTIDMGYICSVCLSIYCKHL--KKCSTCGSVFGQAQ 280 (298)
Q Consensus 238 ~~a~C~CH~-~~~~~GyvCp~Clsi~C~~~--~~C~~C~~~f~~~~ 280 (298)
....|+-.+ ++.-+||.| +|.-.||..- +.=..|...|+...
T Consensus 24 ~~~RC~~C~kkvgL~~f~C-rCg~~FCs~HRy~e~H~C~fDyk~~g 68 (74)
T 1wfp_A 24 TATRCLSCNKKVGVTGFKC-RCGSTFCGTHRYPESHECQFDFKGVA 68 (74)
T ss_dssp CCCBCSSSCCBCTTTCEEC-TTSCEECTTTCSTTTSCCCSCTTSCC
T ss_pred cCccchhhcCcccccceEe-ccCCEeccccCCCcCCCCcCchhHHh
Confidence 345665444 555569999 8999999642 33344666666544
No 77
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=52.96 E-value=6.5 Score=27.46 Aligned_cols=41 Identities=27% Similarity=0.569 Sum_probs=25.0
Q ss_pred ceeeeec-cCcccceeEcCCCCeeecCCC--CCCccccccccccc
Q 022374 239 RASCFCH-KNTIDMGYICSVCLSIYCKHL--KKCSTCGSVFGQAQ 280 (298)
Q Consensus 239 ~a~C~CH-~~~~~~GyvCp~Clsi~C~~~--~~C~~C~~~f~~~~ 280 (298)
...|.-. .++.-+||.| +|.-.||..- +.=..|..-|+...
T Consensus 15 ~~rC~~C~kkvgl~~f~C-rCg~~FC~~HR~~e~H~C~fDyk~~g 58 (64)
T 1wg2_A 15 NNRCFSCNKKVGVMGFKC-KCGSTFCGSHRYPEKHECSFDFKEVG 58 (64)
T ss_dssp SCSCTTTCCCCTTSCEEC-TTSCEECSSSCSSTTTTCCCCCSCSC
T ss_pred CCcChhhCCcccccCeEe-ecCCEecccCCCccccCCCcchhHHh
Confidence 3456544 4455569999 9999999742 23334555555443
No 78
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.79 E-value=2.2 Score=31.14 Aligned_cols=31 Identities=19% Similarity=0.458 Sum_probs=24.3
Q ss_pred cceeEcCCCCeeec----------------CCCCCCccccccccccc
Q 022374 250 DMGYICSVCLSIYC----------------KHLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 250 ~~GyvCp~Clsi~C----------------~~~~~C~~C~~~f~~~~ 280 (298)
..-|.|+.|...|- +.+-.|..|+..|....
T Consensus 22 ~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~~~~ 68 (98)
T 2gqj_A 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKA 68 (98)
T ss_dssp TSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCSCHH
T ss_pred CCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccCCHH
Confidence 34699999999998 23458999999998654
No 79
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=52.50 E-value=8.6 Score=28.11 Aligned_cols=30 Identities=17% Similarity=0.470 Sum_probs=24.0
Q ss_pred ceeEcCCCCeee-c-------------CCCCCCccccccccccc
Q 022374 251 MGYICSVCLSIY-C-------------KHLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp~Clsi~-C-------------~~~~~C~~C~~~f~~~~ 280 (298)
.-|.|+.|...| - +-|-.|..||..|....
T Consensus 33 ~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~~~~ 76 (96)
T 2ctd_A 33 GSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLA 76 (96)
T ss_dssp SCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCSSHH
T ss_pred CCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeCCHH
Confidence 459999999999 4 34568999999998654
No 80
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=50.96 E-value=14 Score=25.74 Aligned_cols=30 Identities=20% Similarity=0.420 Sum_probs=26.0
Q ss_pred ceeEcCCCCeeecCCCCCCccccccccccc
Q 022374 251 MGYICSVCLSIYCKHLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp~Clsi~C~~~~~C~~C~~~f~~~~ 280 (298)
-++.||.|-.+--..-+.|-.|++...+..
T Consensus 7 ~~W~CP~CTf~N~p~~p~CEmC~~prp~~~ 36 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPGCEMCCRARPETY 36 (64)
T ss_dssp CSEECTTTCCEECTTCSBCTTTCCBCCSSC
T ss_pred CCCcCCCccccCCCCCCccCcCCCCCCccc
Confidence 479999999998888899999999977654
No 81
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=50.91 E-value=7.9 Score=23.29 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=8.4
Q ss_pred eeEcCCCCeeec
Q 022374 252 GYICSVCLSIYC 263 (298)
Q Consensus 252 GyvCp~Clsi~C 263 (298)
-|.|+.|...|-
T Consensus 10 ~~~C~~C~k~f~ 21 (45)
T 2epq_A 10 PYSCPVCGLRFK 21 (45)
T ss_dssp SSEETTTTEECS
T ss_pred CCcCCCCCcccC
Confidence 477777777665
No 82
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=50.65 E-value=10 Score=29.23 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=22.7
Q ss_pred ccceeEcCCCCeeec--CCCC-CCcccccccc
Q 022374 249 IDMGYICSVCLSIYC--KHLK-KCSTCGSVFG 277 (298)
Q Consensus 249 ~~~GyvCp~Clsi~C--~~~~-~C~~C~~~f~ 277 (298)
+..-|.|..|+..|= +.+. .||.||....
T Consensus 70 ~p~~~~C~~CG~~~e~~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNALDYGVCEKCHSKNV 101 (119)
T ss_dssp ECCEEECSSSSCEECSCCSTTCCCSSSSSCCC
T ss_pred ccceEEcCCCCCEEeCCCCCCCcCccccCCCc
Confidence 355799999999987 3456 8999998754
No 83
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=50.07 E-value=14 Score=21.44 Aligned_cols=26 Identities=15% Similarity=0.347 Sum_probs=21.6
Q ss_pred ceeEcCCCCeeecCCCCCCccccccc
Q 022374 251 MGYICSVCLSIYCKHLKKCSTCGSVF 276 (298)
Q Consensus 251 ~GyvCp~Clsi~C~~~~~C~~C~~~f 276 (298)
.++.||.|-.+--..-+.|..|++..
T Consensus 5 ~~W~C~~CTf~N~~~~~~Ce~C~~~r 30 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTGHCEMCSLPR 30 (31)
T ss_dssp CCEECSSSCCEECSSCSSCSSSCCCC
T ss_pred ccccCCcccccCCCCCCccCCcCCCC
Confidence 36899999988877778999999754
No 84
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=49.95 E-value=7.7 Score=27.08 Aligned_cols=40 Identities=23% Similarity=0.488 Sum_probs=24.7
Q ss_pred eeeeec-cCcccceeEcCCCCeeecCCC--CCCccccccccccc
Q 022374 240 ASCFCH-KNTIDMGYICSVCLSIYCKHL--KKCSTCGSVFGQAQ 280 (298)
Q Consensus 240 a~C~CH-~~~~~~GyvCp~Clsi~C~~~--~~C~~C~~~f~~~~ 280 (298)
..|+-. .++.-+||.| +|.-.||..- +.=..|..-|+...
T Consensus 16 ~rC~~C~kkvgl~~f~C-rCg~~FC~~HRy~e~H~C~fDyk~~g 58 (64)
T 1wfh_A 16 NRCTVCRKRVGLTGFMC-RCGTTFCGSHRYPEVHGCTFDFKSAG 58 (64)
T ss_dssp CCCTTTCCCCCTTCEEC-SSSCEECTTTCSTTTTTCCCCCSCCC
T ss_pred CcChhhCCccCccCEEe-ecCCEeccccCCcccCCCCchhhHHH
Confidence 456544 4555569999 8999999742 22334555555443
No 85
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=49.26 E-value=7.2 Score=31.45 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.3
Q ss_pred cceeEcCCCCeeecCCCCCCcccccc
Q 022374 250 DMGYICSVCLSIYCKHLKKCSTCGSV 275 (298)
Q Consensus 250 ~~GyvCp~Clsi~C~~~~~C~~C~~~ 275 (298)
-.|..|+.|..++-.....|+.|+..
T Consensus 45 L~~~rC~~CG~~~~PPr~~Cp~C~s~ 70 (145)
T 3irb_A 45 IIGSKCSKCGRIFVPARSYCEHCFVK 70 (145)
T ss_dssp CEEEECTTTCCEEESCCSEETTTTEE
T ss_pred EEEEEeCCCCcEEcCchhhCcCCCCC
Confidence 35889999999999999999999975
No 86
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=49.20 E-value=11 Score=26.14 Aligned_cols=33 Identities=21% Similarity=0.464 Sum_probs=25.6
Q ss_pred cceeEcCCCCeeecCC---CCCCccccccccccccC
Q 022374 250 DMGYICSVCLSIYCKH---LKKCSTCGSVFGQAQTQ 282 (298)
Q Consensus 250 ~~GyvCp~Clsi~C~~---~~~C~~C~~~f~~~~~~ 282 (298)
.+-|+|..|...+--- +..|+-||-+..-..+.
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~~~iRC~~CG~RILyK~Rt 54 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRT 54 (63)
T ss_dssp CCCCBCSSSCCBCCCCSSSCCCCSSSCCCCCBCCCC
T ss_pred CeEEECCCCCCeeecCCCCceECCCCCcEEEEEecC
Confidence 3569999999988633 47999999988766543
No 87
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.28 E-value=6.1 Score=26.21 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=24.9
Q ss_pred cceeEcCCCCeeecC-------CCCCCccccccccccc
Q 022374 250 DMGYICSVCLSIYCK-------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 250 ~~GyvCp~Clsi~C~-------~~~~C~~C~~~f~~~~ 280 (298)
...|.|+.|...|-. .+-.|..||..|....
T Consensus 16 ~~~~~C~~C~k~f~~~~~l~~~~~~~C~~C~~~f~~~~ 53 (73)
T 2ctu_A 16 DRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEA 53 (73)
T ss_dssp CSEEECSSSCCEEECCCCCCCSSSCCCHHHHHTCSCCC
T ss_pred CCCeeCCcccchhCCHHHhCcCCCCCCCCCChhhcCHH
Confidence 346999999988863 4568999999998765
No 88
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=47.84 E-value=4.3 Score=28.61 Aligned_cols=28 Identities=4% Similarity=-0.152 Sum_probs=19.6
Q ss_pred eEcCCCCeeecCCC----CCCccccccccccc
Q 022374 253 YICSVCLSIYCKHL----KKCSTCGSVFGQAQ 280 (298)
Q Consensus 253 yvCp~Clsi~C~~~----~~C~~C~~~f~~~~ 280 (298)
.+||+|++-.-... -.|+.||..|...-
T Consensus 11 L~CP~ck~~L~~~~~~g~LvC~~c~~~YPI~d 42 (67)
T 2jny_A 11 LACPKDKGPLRYLESEQLLVNERLNLAYRIDD 42 (67)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred hCCCCCCCcCeEeCCCCEEEcCCCCccccCCC
Confidence 58999998543222 27999999987553
No 89
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.35 E-value=9.2 Score=26.03 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=23.4
Q ss_pred cceeEcCCCCeeecC-----------------CCCCCccccccccccc
Q 022374 250 DMGYICSVCLSIYCK-----------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 250 ~~GyvCp~Clsi~C~-----------------~~~~C~~C~~~f~~~~ 280 (298)
..-|.|+.|...|-. .+-.|..|+..|....
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~~~~ 52 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPD 52 (78)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEESSHH
T ss_pred CcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhCCHH
Confidence 345999999988852 3458999999998543
No 90
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=47.33 E-value=5.1 Score=29.41 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=25.0
Q ss_pred ceeEcCCCCeeecCCC----CCCccccccccccccCCCCC
Q 022374 251 MGYICSVCLSIYCKHL----KKCSTCGSVFGQAQTQSDEP 286 (298)
Q Consensus 251 ~GyvCp~Clsi~C~~~----~~C~~C~~~f~~~~~~~~~~ 286 (298)
.-|.||.|..-.=.-+ -.|+-||..|.--.-.|.-|
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~aggay~~~t~ 65 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETP 65 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEECCSSSSSCH
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEecCCEecccch
Confidence 4699999998443333 36999999998765444333
No 91
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=47.31 E-value=6.3 Score=26.66 Aligned_cols=30 Identities=23% Similarity=0.668 Sum_probs=22.7
Q ss_pred ceeEcCCCCeeecC--------------CCCCCccccccccccc
Q 022374 251 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp~Clsi~C~--------------~~~~C~~C~~~f~~~~ 280 (298)
..|.|+.|...|-. .+-.|..|+..|....
T Consensus 16 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~ 59 (74)
T 2lce_A 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPA 59 (74)
T ss_dssp CSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHH
T ss_pred CCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHH
Confidence 45899999888763 3448999999987654
No 92
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=47.13 E-value=12 Score=26.98 Aligned_cols=30 Identities=20% Similarity=0.644 Sum_probs=19.7
Q ss_pred cccceeEcCCCC------eeecC---CCCCCcccccccc
Q 022374 248 TIDMGYICSVCL------SIYCK---HLKKCSTCGSVFG 277 (298)
Q Consensus 248 ~~~~GyvCp~Cl------si~C~---~~~~C~~C~~~f~ 277 (298)
.+..-||||+|. +-|+. .-|.|..||.+=.
T Consensus 13 ~~~~tWVCpICsfsN~v~s~fdp~~~~lPpC~aCGIkP~ 51 (76)
T 2j9u_B 13 DVVSTWVCPICMVSNETQGEFTKDTLPTPICINCGVPAD 51 (76)
T ss_dssp --CEEEECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCC
T ss_pred ccccceECccccccCcCccccCCCCCCCCcccccCccCC
Confidence 456789999998 33332 2367999997644
No 93
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=47.01 E-value=8.2 Score=40.94 Aligned_cols=40 Identities=20% Similarity=0.532 Sum_probs=26.8
Q ss_pred ceeeeecc----CcccceeEcCCCCe-ee---------cCCC-CCCccccccccc
Q 022374 239 RASCFCHK----NTIDMGYICSVCLS-IY---------CKHL-KKCSTCGSVFGQ 278 (298)
Q Consensus 239 ~a~C~CH~----~~~~~GyvCp~Cls-i~---------C~~~-~~C~~C~~~f~~ 278 (298)
...|+|-+ .++.-.|+||.|.- -| +++| ..||.||+.+..
T Consensus 485 SlVAy~LgITeVDPl~phy~c~~c~~~ef~~~~~~~~g~dlp~k~cp~cg~~~~~ 539 (1041)
T 3f2b_A 485 SFVATMTEITEVNPLPPHYVCPNCKHSEFFNDGSVGSGFDLPDKNCPRCGTKYKK 539 (1041)
T ss_dssp CHHHHHTTSCSCCCSCSEEECTTTCCEEECCSSCCSCGGGSCCCBCTTTCCBCEE
T ss_pred HHHHHHhcCCCcCCCcccccCccccccccccccccccccCCccccCccccccccc
Confidence 34577765 22345899999983 22 2455 599999997763
No 94
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=46.57 E-value=4.9 Score=28.53 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=20.3
Q ss_pred eEcCCCCeeecCCC----CCCccccccccccc
Q 022374 253 YICSVCLSIYCKHL----KKCSTCGSVFGQAQ 280 (298)
Q Consensus 253 yvCp~Clsi~C~~~----~~C~~C~~~f~~~~ 280 (298)
.+||+|+.-.--.. -+|+.||..|...-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRLAFPVRD 40 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCceecCCC
Confidence 58999998654322 27999999998553
No 95
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=46.14 E-value=15 Score=25.27 Aligned_cols=15 Identities=20% Similarity=0.654 Sum_probs=11.0
Q ss_pred CCCCccccccccccc
Q 022374 266 LKKCSTCGSVFGQAQ 280 (298)
Q Consensus 266 ~~~C~~C~~~f~~~~ 280 (298)
...||+|+..+....
T Consensus 53 ~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 53 KSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCCSSSCCCCCSSG
T ss_pred CCcCCCCCCcCCHhh
Confidence 457899988887544
No 96
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=45.91 E-value=10 Score=24.73 Aligned_cols=30 Identities=27% Similarity=0.667 Sum_probs=21.8
Q ss_pred ceeEcCCCCeeecC----------------CCCCCccccccccccc
Q 022374 251 MGYICSVCLSIYCK----------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp~Clsi~C~----------------~~~~C~~C~~~f~~~~ 280 (298)
.-|.|+.|...|-. .|-.|+.|+..|....
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~~~ 54 (66)
T 2drp_A 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKD 54 (66)
T ss_dssp TEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESCHH
T ss_pred cceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCCHH
Confidence 45899999887752 1237999999887643
No 97
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=44.60 E-value=18 Score=21.49 Aligned_cols=25 Identities=20% Similarity=0.569 Sum_probs=21.3
Q ss_pred ceeEcCCCCeeecCCCCCCcccccc
Q 022374 251 MGYICSVCLSIYCKHLKKCSTCGSV 275 (298)
Q Consensus 251 ~GyvCp~Clsi~C~~~~~C~~C~~~ 275 (298)
.++.|+.|-.+--..-+.|..|++.
T Consensus 7 ~~W~C~~CT~~N~~~~~~Ce~C~~~ 31 (34)
T 3a9j_C 7 AQWNCTACTFLNHPALIRCEQCEMP 31 (34)
T ss_dssp CCEECTTTCCEECTTCSBCTTTCCB
T ss_pred CcCCCCCCccccCCCCCeeCCCCCc
Confidence 4799999998887777899999875
No 98
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=44.39 E-value=13 Score=25.53 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=20.3
Q ss_pred eEcCCCCeeecCCCCCCccccccccccc
Q 022374 253 YICSVCLSIYCKHLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 253 yvCp~Clsi~C~~~~~C~~C~~~f~~~~ 280 (298)
-.|+.|....= ...|+.||....++-
T Consensus 6 r~C~~Cg~YTL--k~~CP~CG~~t~~ah 31 (60)
T 2aus_D 6 RKCPKCGRYTL--KETCPVCGEKTKVAH 31 (60)
T ss_dssp EECTTTCCEES--SSBCTTTCSBCEESS
T ss_pred eECCCCCCEEc--cccCcCCCCccCCCC
Confidence 47999976554 678999999888764
No 99
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=43.96 E-value=14 Score=27.70 Aligned_cols=30 Identities=27% Similarity=0.796 Sum_probs=23.9
Q ss_pred ceeEcCCCCeeec------------CCCCCCccccccccccc
Q 022374 251 MGYICSVCLSIYC------------KHLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp~Clsi~C------------~~~~~C~~C~~~f~~~~ 280 (298)
..|.|+.|...|- +.|-.|..||..|....
T Consensus 73 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f~~~~ 114 (129)
T 2wbt_A 73 SQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFTSTD 114 (129)
T ss_dssp CSEECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBCSSHH
T ss_pred CCeECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCcccCCHH
Confidence 3599999998886 34568999999998654
No 100
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=43.87 E-value=11 Score=26.31 Aligned_cols=27 Identities=22% Similarity=0.853 Sum_probs=15.8
Q ss_pred eEcCCCCeeecC--------------CCCCCcccccccccc
Q 022374 253 YICSVCLSIYCK--------------HLKKCSTCGSVFGQA 279 (298)
Q Consensus 253 yvCp~Clsi~C~--------------~~~~C~~C~~~f~~~ 279 (298)
|.|+.|...|-. .|-.|+.|+..|...
T Consensus 4 ~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~f~~~ 44 (88)
T 1llm_C 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARS 44 (88)
T ss_dssp EECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSH
T ss_pred CcCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCCccCCH
Confidence 666666666642 233566676666543
No 101
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=43.40 E-value=38 Score=28.22 Aligned_cols=64 Identities=9% Similarity=-0.063 Sum_probs=38.3
Q ss_pred CCCCcEEEEEEcCCCC----ChhhhHHHHH-HHHHHcCCeeEEEEEcCCC-ChHHHHHHHhhcCCeeeee
Q 022374 141 LHPQPRILCLQGSPDG----PEQYVAIMNA-IFSAQRSMVPIDSCYLGAQ-NSAFLQQASYITGGVHHKP 204 (298)
Q Consensus 141 ~~~~~rILii~~S~d~----~~qyi~lmN~-ifaAqk~~I~Idv~~L~~~-e~~~LqQa~~~T~G~Y~~~ 204 (298)
-|.+++||||.+||+. .+---.+.+. ...+++.+..|.++-|... ++.-+++.-..-.++-+..
T Consensus 9 ~~~~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~~ 78 (204)
T 2amj_A 9 HHGSSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQM 78 (204)
T ss_dssp ---CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEEE
T ss_pred ccCCcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEEC
Confidence 3689999999999872 2332334453 4445666899999999532 4555555555556665554
No 102
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=43.12 E-value=12 Score=25.37 Aligned_cols=29 Identities=31% Similarity=0.779 Sum_probs=21.8
Q ss_pred eeEcCCCCeeecC--------------CCCCCccccccccccc
Q 022374 252 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 252 GyvCp~Clsi~C~--------------~~~~C~~C~~~f~~~~ 280 (298)
.|.|+.|...|-. .+-.|+.|+..|....
T Consensus 29 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 71 (82)
T 2kmk_A 29 PYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSS 71 (82)
T ss_dssp CEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEESSHH
T ss_pred CeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhCChH
Confidence 4889999888753 3457999998887643
No 103
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=43.09 E-value=12 Score=25.35 Aligned_cols=30 Identities=20% Similarity=0.606 Sum_probs=23.1
Q ss_pred ceeEcCCCCeeecC----------------CCCCCccccccccccc
Q 022374 251 MGYICSVCLSIYCK----------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp~Clsi~C~----------------~~~~C~~C~~~f~~~~ 280 (298)
.-|.|+.|...|-. .+-.|+.|+..|....
T Consensus 14 k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~ 59 (77)
T 2ct1_A 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKS 59 (77)
T ss_dssp CSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHH
T ss_pred CCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHH
Confidence 45999999988762 2347999999998654
No 104
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=42.62 E-value=16 Score=25.49 Aligned_cols=29 Identities=28% Similarity=0.685 Sum_probs=22.0
Q ss_pred eeEcCCCCeeecC----------------CCCCCccccccccccc
Q 022374 252 GYICSVCLSIYCK----------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 252 GyvCp~Clsi~C~----------------~~~~C~~C~~~f~~~~ 280 (298)
-|.|+.|...|-. .+-.|+.|+..|....
T Consensus 35 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~ 79 (95)
T 2yt9_A 35 PYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPD 79 (95)
T ss_dssp SEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHH
T ss_pred CCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHH
Confidence 4899999888762 3457999999887654
No 105
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=42.33 E-value=12 Score=25.86 Aligned_cols=29 Identities=21% Similarity=0.786 Sum_probs=22.5
Q ss_pred eeEcCCCCeeecC--------------CCCCCccccccccccc
Q 022374 252 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 252 GyvCp~Clsi~C~--------------~~~~C~~C~~~f~~~~ 280 (298)
.|.|+.|...|-. .+-.|+.|+..|....
T Consensus 34 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 76 (90)
T 1a1h_A 34 PFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSD 76 (90)
T ss_dssp CEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHH
T ss_pred CccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhCCHH
Confidence 5899999988763 3457999999988654
No 106
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=42.10 E-value=5.6 Score=29.37 Aligned_cols=32 Identities=19% Similarity=0.498 Sum_probs=24.3
Q ss_pred ccceeEcCCCCee---ecCC-------CCCCccccccccccc
Q 022374 249 IDMGYICSVCLSI---YCKH-------LKKCSTCGSVFGQAQ 280 (298)
Q Consensus 249 ~~~GyvCp~Clsi---~C~~-------~~~C~~C~~~f~~~~ 280 (298)
.+.-|-||.|... -|++ ...|.+||..|....
T Consensus 20 L~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i 61 (85)
T 1wii_A 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPI 61 (85)
T ss_dssp CSSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEEC
T ss_pred CCCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEecc
Confidence 3556999999865 5554 258999999998755
No 107
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.68 E-value=17 Score=25.15 Aligned_cols=17 Identities=12% Similarity=0.442 Sum_probs=12.8
Q ss_pred CCCCccccccccccccC
Q 022374 266 LKKCSTCGSVFGQAQTQ 282 (298)
Q Consensus 266 ~~~C~~C~~~f~~~~~~ 282 (298)
...||.|+..+....+.
T Consensus 59 ~~~CP~Cr~~~~~~~~~ 75 (85)
T 2ecv_A 59 ESSCPVCRISYQPENIR 75 (85)
T ss_dssp CCCCTTTCCSSCSSSCC
T ss_pred CCcCCCCCCccCHHhcC
Confidence 57899999988865433
No 108
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=41.42 E-value=10 Score=27.72 Aligned_cols=24 Identities=17% Similarity=0.509 Sum_probs=13.1
Q ss_pred eeEcCCCCeeecCCCCCCccccccc
Q 022374 252 GYICSVCLSIYCKHLKKCSTCGSVF 276 (298)
Q Consensus 252 GyvCp~Clsi~C~~~~~C~~C~~~f 276 (298)
.|.|+.|.+-|=... .||.||..+
T Consensus 18 ~~~C~~C~~~~~~~a-fCPeCgq~L 41 (81)
T 2jrp_A 18 TAHCETCAKDFSLQA-LCPDCRQPL 41 (81)
T ss_dssp EEECTTTCCEEEEEE-ECSSSCSCC
T ss_pred ceECccccccCCCcc-cCcchhhHH
Confidence 344777766554443 555555544
No 109
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=41.19 E-value=8.7 Score=26.13 Aligned_cols=31 Identities=29% Similarity=0.628 Sum_probs=23.1
Q ss_pred cceeEcCCCCeeecC--------------CCCCCccccccccccc
Q 022374 250 DMGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 250 ~~GyvCp~Clsi~C~--------------~~~~C~~C~~~f~~~~ 280 (298)
...|.|+.|...|-. .+-.|+.|+..|....
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 60 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRS 60 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHH
T ss_pred CCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHH
Confidence 346899999888762 2347999999998654
No 110
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=41.07 E-value=13 Score=25.54 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=15.9
Q ss_pred eEcCCCCeeecCCC-CCCcccccc
Q 022374 253 YICSVCLSIYCKHL-KKCSTCGSV 275 (298)
Q Consensus 253 yvCp~Clsi~C~~~-~~C~~C~~~ 275 (298)
-.||.|+.. .+| ..|+.||..
T Consensus 31 ~~c~~cG~~--~~pH~vc~~CG~Y 52 (60)
T 2zjr_Z 31 TECPQCHGK--KLSHHICPNCGYY 52 (60)
T ss_dssp EECTTTCCE--ECTTBCCTTTCBS
T ss_pred eECCCCCCE--eCCceEcCCCCcC
Confidence 469999988 444 689999964
No 111
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=40.90 E-value=12 Score=29.22 Aligned_cols=12 Identities=33% Similarity=0.827 Sum_probs=6.2
Q ss_pred CCCccccccccc
Q 022374 267 KKCSTCGSVFGQ 278 (298)
Q Consensus 267 ~~C~~C~~~f~~ 278 (298)
-.|+.||..|..
T Consensus 79 ~~C~~C~k~F~~ 90 (133)
T 2lt7_A 79 YQCLACGKSFIN 90 (133)
T ss_dssp EEESSSCCEESS
T ss_pred ccCCCCCCCcCC
Confidence 355555555543
No 112
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=40.77 E-value=11 Score=34.47 Aligned_cols=37 Identities=14% Similarity=0.096 Sum_probs=25.9
Q ss_pred eeeeccCccc--c-eeEcCCCCeeecCC--CCCCcccccccc
Q 022374 241 SCFCHKNTID--M-GYICSVCLSIYCKH--LKKCSTCGSVFG 277 (298)
Q Consensus 241 ~C~CH~~~~~--~-GyvCp~Clsi~C~~--~~~C~~C~~~f~ 277 (298)
.|.=..+.+. . --.||.|++.|..- ...|++|+..-+
T Consensus 264 iCa~s~tPIY~g~~~v~Cp~cgA~y~~~~kG~lC~vC~l~~I 305 (320)
T 3mkr_B 264 ICAASYRPIYRGKPVEKCPLSGACYSPEFKGQICKVTTVTEI 305 (320)
T ss_dssp BBTTTCCBCCTTSCCEECTTTCCEECGGGTTSBCTTTSSBBS
T ss_pred eecCCCccccCCCCCccCCCCCCeechhhCCCCCCCCcCccc
Confidence 4554445443 2 34799999999964 578999987655
No 113
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=40.64 E-value=17 Score=25.12 Aligned_cols=31 Identities=13% Similarity=0.424 Sum_probs=21.4
Q ss_pred eEcCCCCeeecCCCCCCccccccccccccCC
Q 022374 253 YICSVCLSIYCKHLKKCSTCGSVFGQAQTQS 283 (298)
Q Consensus 253 yvCp~Clsi~C~~~~~C~~C~~~f~~~~~~~ 283 (298)
.+|..|+...-+....||+|...+......+
T Consensus 39 ~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (78)
T 2ect_A 39 LFHDSCIVPWLEQHDSCPVCRKSLTGQNTAT 69 (78)
T ss_dssp EEETTTTHHHHTTTCSCTTTCCCCCCSCSCC
T ss_pred eecHHHHHHHHHcCCcCcCcCCccCCcccCC
Confidence 3455555555555678999999998776443
No 114
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=40.33 E-value=14 Score=26.00 Aligned_cols=30 Identities=20% Similarity=0.373 Sum_probs=23.2
Q ss_pred ceeEcCCCCeeecC--------------CCCCCccccccccccc
Q 022374 251 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp~Clsi~C~--------------~~~~C~~C~~~f~~~~ 280 (298)
..|.|+.|...|-. .+-.|+.|+..|....
T Consensus 35 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 78 (96)
T 2dmd_A 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSS 78 (96)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESSHH
T ss_pred CCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCCHH
Confidence 35999999988863 3458999999998654
No 115
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=40.10 E-value=6 Score=28.21 Aligned_cols=26 Identities=23% Similarity=0.617 Sum_probs=18.3
Q ss_pred eeEcCCCCeeecCC----CCCCcccccccccc
Q 022374 252 GYICSVCLSIYCKH----LKKCSTCGSVFGQA 279 (298)
Q Consensus 252 GyvCp~Clsi~C~~----~~~C~~C~~~f~~~ 279 (298)
-+.|| |....=.- ...|+ ||.++...
T Consensus 4 vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 4 IFRCD-CGRALYSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEET-TSCCEEEETTCSEEEET-TTEEEECC
T ss_pred EEECC-CCCEEEEcCCCcEEECC-CCCeeeec
Confidence 47899 98764421 25898 99998754
No 116
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=39.66 E-value=23 Score=20.92 Aligned_cols=25 Identities=24% Similarity=0.608 Sum_probs=20.8
Q ss_pred ceeEcCCCCeeecCCCCCCcccccc
Q 022374 251 MGYICSVCLSIYCKHLKKCSTCGSV 275 (298)
Q Consensus 251 ~GyvCp~Clsi~C~~~~~C~~C~~~ 275 (298)
.-+.|+.|...-=.....|..|++.
T Consensus 4 gDW~C~~C~~~Nfa~r~~C~~C~~p 28 (32)
T 2lk0_A 4 EDWLCNKCCLNNFRKRLKCFRCGAD 28 (32)
T ss_dssp SEEECTTTCCEEETTCCBCTTTCCB
T ss_pred CCCCcCcCcCCcChhcceecCCCCc
Confidence 4589999998877788899999874
No 117
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=39.57 E-value=20 Score=23.84 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=25.5
Q ss_pred cceeEcCCCCeeecCCCCCCccccccccccc
Q 022374 250 DMGYICSVCLSIYCKHLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 250 ~~GyvCp~Clsi~C~~~~~C~~C~~~f~~~~ 280 (298)
+-++.||.|-.+--..-+.|..|++......
T Consensus 8 ~~~W~Cp~CTf~N~p~~~~CemC~~prp~~~ 38 (52)
T 2crc_A 8 PVGWQCPGCTFINKPTRPGCEMCCRARPEAY 38 (52)
T ss_dssp SSSBCCTTTCCCBCTTCSSCSSSCCCCCTTS
T ss_pred CCCccCCCcccccCCCCCeeCCCCCcCCccc
Confidence 3479999999888777789999999876654
No 118
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=39.20 E-value=13 Score=26.51 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=23.6
Q ss_pred ceeEcCCCCeeecCCC----CCCccccccccccccCC
Q 022374 251 MGYICSVCLSIYCKHL----KKCSTCGSVFGQAQTQS 283 (298)
Q Consensus 251 ~GyvCp~Clsi~C~~~----~~C~~C~~~f~~~~~~~ 283 (298)
.-|.||.|...-=+.. =.|.-|+.+|.--.-.|
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~ 61 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTV 61 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSCCCCCCSSSSS
T ss_pred cCccCCCCCCceeEecCCCeEECCCCCCEEeCCcccc
Confidence 3599999997754433 26999999988655444
No 119
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=39.19 E-value=18 Score=26.51 Aligned_cols=31 Identities=32% Similarity=0.706 Sum_probs=24.3
Q ss_pred cceeEcCCCCeeecC--------------CCCCCccccccccccc
Q 022374 250 DMGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 250 ~~GyvCp~Clsi~C~--------------~~~~C~~C~~~f~~~~ 280 (298)
...|.|+.|...|-. .|-.|+.|+..|....
T Consensus 64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 108 (124)
T 2dlq_A 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKK 108 (124)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEESSHH
T ss_pred CCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhCCHH
Confidence 446999999998873 3458999999998654
No 120
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=39.14 E-value=24 Score=30.71 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=31.2
Q ss_pred eeeeeccCcccceeEcCCCCeeecC----------CCCCCccccccccccc
Q 022374 240 ASCFCHKNTIDMGYICSVCLSIYCK----------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 240 a~C~CH~~~~~~GyvCp~Clsi~C~----------~~~~C~~C~~~f~~~~ 280 (298)
..|.=.+.++..|..|+.|...|-. -...||.|+..+.-..
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~ 231 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 231 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCC
Confidence 4576667888899999999887752 1358999999876554
No 121
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=38.77 E-value=13 Score=26.62 Aligned_cols=41 Identities=20% Similarity=0.504 Sum_probs=26.6
Q ss_pred ceeeeec-cCcccceeEcCCCCeeecCCC--CCCccccccccccc
Q 022374 239 RASCFCH-KNTIDMGYICSVCLSIYCKHL--KKCSTCGSVFGQAQ 280 (298)
Q Consensus 239 ~a~C~CH-~~~~~~GyvCp~Clsi~C~~~--~~C~~C~~~f~~~~ 280 (298)
...|+-. .++.-+||.|. |...||..- +.=..|..-|+...
T Consensus 25 ~nRC~~CrKkvgL~gf~Cr-Cg~~FCs~HRy~e~H~C~fDyk~~g 68 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTGFDCR-CGNLFCGLHRYSDKHNCPYDYKAEA 68 (74)
T ss_dssp TTBCSSSCCBCGGGCEECT-TSCEECSSSCSTTTTTCCCCGGGTS
T ss_pred CCcChhhCCcccccCeecC-CCCEechhcCCCccCCCcchhhhhc
Confidence 3457644 45566799999 999999743 33344555555544
No 122
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=38.58 E-value=9.3 Score=26.79 Aligned_cols=27 Identities=22% Similarity=0.525 Sum_probs=21.3
Q ss_pred EcCCCCeeecC-----CCCCCccccccccccc
Q 022374 254 ICSVCLSIYCK-----HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 254 vCp~Clsi~C~-----~~~~C~~C~~~f~~~~ 280 (298)
-||-|..+.-- ....|..||+.|..+.
T Consensus 9 KCp~C~niq~VFShA~tvV~C~~Cg~~L~~PT 40 (66)
T 1qxf_A 9 KCPDCEHEQVIFDHPSTIVKCIICGRTVAEPT 40 (66)
T ss_dssp ECTTTCCEEEEESSCSSCEECSSSCCEEEECC
T ss_pred ECCCCCCceEEEecCceEEEcccCCCEEeecC
Confidence 49999876653 3479999999998776
No 123
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=38.02 E-value=13 Score=34.11 Aligned_cols=26 Identities=12% Similarity=-0.297 Sum_probs=21.1
Q ss_pred eeEcCCCCeeecCC--CCCCcccccccc
Q 022374 252 GYICSVCLSIYCKH--LKKCSTCGSVFG 277 (298)
Q Consensus 252 GyvCp~Clsi~C~~--~~~C~~C~~~f~ 277 (298)
--.||.|++.|..- ...|++|+..-+
T Consensus 287 ~v~Cp~cgA~y~~~~kG~lC~vC~l~~I 314 (325)
T 3mv2_A 287 SVSDPLTGSKYVITEKDKIDRIAMISKI 314 (325)
T ss_dssp EEECTTTCCEEEGGGTTSBCSSSSCBBT
T ss_pred CccCCCCCCeechhhCCCCCCCCcCccc
Confidence 45699999999964 579999987654
No 124
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=37.96 E-value=15 Score=24.42 Aligned_cols=30 Identities=20% Similarity=0.568 Sum_probs=21.8
Q ss_pred ceeEcC--CCCeeecC--------------CCCCCccccccccccc
Q 022374 251 MGYICS--VCLSIYCK--------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp--~Clsi~C~--------------~~~~C~~C~~~f~~~~ 280 (298)
.-|.|+ .|...|-. .+-.|+.||..|....
T Consensus 18 ~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 63 (73)
T 1f2i_G 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSD 63 (73)
T ss_dssp CCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHH
T ss_pred CccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhCCHH
Confidence 359997 49888763 3457999999887643
No 125
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=37.74 E-value=10 Score=29.58 Aligned_cols=35 Identities=20% Similarity=0.420 Sum_probs=23.3
Q ss_pred eeEcCCCCeeecC----CCCCCccccccccccccCCCCC
Q 022374 252 GYICSVCLSIYCK----HLKKCSTCGSVFGQAQTQSDEP 286 (298)
Q Consensus 252 GyvCp~Clsi~C~----~~~~C~~C~~~f~~~~~~~~~~ 286 (298)
-|+||.|...-=. ---.|+-|+..|.--.-.|.-|
T Consensus 60 kytCPfCGk~~vKR~avGIW~C~~Cgk~fAGGAy~~~T~ 98 (116)
T 3cc2_Z 60 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETP 98 (116)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEECCSSSSSCH
T ss_pred CCcCCCCCCceeEecCceeEECCCCCCEEECCCcccccc
Confidence 6999999872211 1136999999998765444333
No 126
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=37.67 E-value=14 Score=29.78 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.7
Q ss_pred cceeEcCCCCeeecCCCCCCcccccc
Q 022374 250 DMGYICSVCLSIYCKHLKKCSTCGSV 275 (298)
Q Consensus 250 ~~GyvCp~Clsi~C~~~~~C~~C~~~ 275 (298)
-.|..|+.|..++-...+.|+.|+..
T Consensus 45 L~~~rC~~CG~~~fPPr~~Cp~C~s~ 70 (145)
T 2gnr_A 45 IIGSKCSKCGRIFVPARSYCEHCFVK 70 (145)
T ss_dssp CEEEECTTTCCEEESCCSEETTTTEE
T ss_pred EEEEEECCCCcEEeCCCCCCCCCCCC
Confidence 35889999999998888899999876
No 127
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=37.07 E-value=22 Score=21.53 Aligned_cols=13 Identities=23% Similarity=0.631 Sum_probs=9.6
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 11 k~~~C~~C~k~f~ 23 (48)
T 2epr_A 11 KQVACEICGKIFR 23 (48)
T ss_dssp CSEEETTTTEEES
T ss_pred cCeeCCCCCcccC
Confidence 3588888887775
No 128
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=36.47 E-value=14 Score=27.62 Aligned_cols=17 Identities=0% Similarity=-0.136 Sum_probs=12.6
Q ss_pred CCCCccccccccccccC
Q 022374 266 LKKCSTCGSVFGQAQTQ 282 (298)
Q Consensus 266 ~~~C~~C~~~f~~~~~~ 282 (298)
...||.|+..|...-+.
T Consensus 63 ~~~cP~~~~~l~~~~L~ 79 (100)
T 2kre_A 63 SPTDPFNRQTLTESMLE 79 (100)
T ss_dssp CSBCSSSCCBCCTTSSE
T ss_pred CCCCCCCCCCCChhhce
Confidence 46899999988765443
No 129
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=35.85 E-value=10 Score=26.71 Aligned_cols=28 Identities=14% Similarity=0.277 Sum_probs=19.7
Q ss_pred eEcCCCCeeecCCC----CCCccccccccccc
Q 022374 253 YICSVCLSIYCKHL----KKCSTCGSVFGQAQ 280 (298)
Q Consensus 253 yvCp~Clsi~C~~~----~~C~~C~~~f~~~~ 280 (298)
.+||+|..-.--.. -+|+.||..|...-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAFPIKD 40 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 58999997544222 27999999987553
No 130
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=35.59 E-value=11 Score=26.53 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=19.6
Q ss_pred eEcCCCCeeecCCC----CCCccccccccccc
Q 022374 253 YICSVCLSIYCKHL----KKCSTCGSVFGQAQ 280 (298)
Q Consensus 253 yvCp~Clsi~C~~~----~~C~~C~~~f~~~~ 280 (298)
.+||+|..-.---. -+|+.||..|...-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (69)
T 2pk7_A 9 LACPICKGPLKLSADKTELISKGAGLAYPIRD 40 (69)
T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEEEEET
T ss_pred eeCCCCCCcCeEeCCCCEEEcCCCCcEecCcC
Confidence 58999987654221 27999999987553
No 131
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=35.07 E-value=18 Score=26.19 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=21.0
Q ss_pred eeEcCCCCeeecC--------------CCCCCcccccccccc
Q 022374 252 GYICSVCLSIYCK--------------HLKKCSTCGSVFGQA 279 (298)
Q Consensus 252 GyvCp~Clsi~C~--------------~~~~C~~C~~~f~~~ 279 (298)
.|.|+.|...|-. .+-.|+.|+..|...
T Consensus 37 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~ 78 (110)
T 2csh_A 37 PYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWR 78 (110)
T ss_dssp SEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESCH
T ss_pred CccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcCH
Confidence 4899999888763 234799999988754
No 132
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=34.87 E-value=11 Score=26.61 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=19.6
Q ss_pred eEcCCCCeeecCCC----CCCccccccccccc
Q 022374 253 YICSVCLSIYCKHL----KKCSTCGSVFGQAQ 280 (298)
Q Consensus 253 yvCp~Clsi~C~~~----~~C~~C~~~f~~~~ 280 (298)
.+||+|..-.--.. -+|+.||..|...-
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~YPI~d 40 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKLAYPIKD 40 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTEEEEEET
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEecCCC
Confidence 58999987544222 27999999987553
No 133
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=34.69 E-value=18 Score=25.90 Aligned_cols=30 Identities=30% Similarity=0.761 Sum_probs=21.8
Q ss_pred ceeEcCCCCeeecC--------------CCCCCccccccccccc
Q 022374 251 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp~Clsi~C~--------------~~~~C~~C~~~f~~~~ 280 (298)
..|.|+.|...|-. .+-.|..|+..|....
T Consensus 44 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~ 87 (106)
T 2ee8_A 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSR 87 (106)
T ss_dssp CCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCSSHH
T ss_pred CCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCcccCHH
Confidence 35888888887752 3458999998887543
No 134
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=33.46 E-value=20 Score=33.62 Aligned_cols=31 Identities=39% Similarity=0.820 Sum_probs=23.6
Q ss_pred cceeE--cCCCCeeec-----CCCCCCccccccccccc
Q 022374 250 DMGYI--CSVCLSIYC-----KHLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 250 ~~Gyv--Cp~Clsi~C-----~~~~~C~~C~~~f~~~~ 280 (298)
..||+ |+.|++..- ..+..|+.||..+....
T Consensus 240 ~~g~v~~C~~C~~~~~~~~~~~~~~~C~~cg~~~~~~G 277 (392)
T 3axs_A 240 QFGYIQYCFNCMNREVVTDLYKFKEKCPHCGSKFHIGG 277 (392)
T ss_dssp TEEEEEECTTTCCEEEECCGGGCCSBCTTTCSBCEEEE
T ss_pred hcceEEECCCCCCeEeecCCCCCCCcCCCCCCccceec
Confidence 45777 999998754 34578999999887553
No 135
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.43 E-value=9.5 Score=27.99 Aligned_cols=9 Identities=22% Similarity=0.781 Sum_probs=5.7
Q ss_pred CCCcc--cccc
Q 022374 267 KKCST--CGSV 275 (298)
Q Consensus 267 ~~C~~--C~~~ 275 (298)
..||. |...
T Consensus 49 ~~CP~tgc~~~ 59 (94)
T 2yu4_A 49 AYCPQIGCSHT 59 (94)
T ss_dssp BCCCSTTCCCC
T ss_pred CCCCcCcCccc
Confidence 46777 6654
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=33.31 E-value=15 Score=31.76 Aligned_cols=25 Identities=16% Similarity=-0.068 Sum_probs=16.2
Q ss_pred CCeeecCC---------CCCCccccccccccccC
Q 022374 258 CLSIYCKH---------LKKCSTCGSVFGQAQTQ 282 (298)
Q Consensus 258 Clsi~C~~---------~~~C~~C~~~f~~~~~~ 282 (298)
|+-.||.- +..||+|+..|....+.
T Consensus 226 ~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~ 259 (281)
T 2c2l_A 226 SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI 259 (281)
T ss_dssp SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE
T ss_pred CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCc
Confidence 66666641 33499999988755433
No 137
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.24 E-value=51 Score=23.26 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=29.6
Q ss_pred eeeeeccCcccceeEcCCCCeeecC--------CC--CCCccccccccccc
Q 022374 240 ASCFCHKNTIDMGYICSVCLSIYCK--------HL--KKCSTCGSVFGQAQ 280 (298)
Q Consensus 240 a~C~CH~~~~~~GyvCp~Clsi~C~--------~~--~~C~~C~~~f~~~~ 280 (298)
..|.-.+.++..|..|+.|.-.|-. -. ..||.|+..+....
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 3455555666679999999887753 22 67999999887554
No 138
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=33.10 E-value=30 Score=23.16 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=18.9
Q ss_pred ceeEcCC--CCeeecC--------------CCCCCccccccc
Q 022374 251 MGYICSV--CLSIYCK--------------HLKKCSTCGSVF 276 (298)
Q Consensus 251 ~GyvCp~--Clsi~C~--------------~~~~C~~C~~~f 276 (298)
.-|.|+. |...|-. .|-.|..||..|
T Consensus 37 ~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~k~F 78 (79)
T 2dlk_A 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78 (79)
T ss_dssp CCEECSCTTTCCEESSHHHHHHHHHHHHTSCCCSCCSSSCCC
T ss_pred CCeECCCCCCcCccCCHHHHHHHHHHhCCCCCeeCCCCCCCC
Confidence 3588888 8887763 345788888776
No 139
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=33.09 E-value=38 Score=23.90 Aligned_cols=15 Identities=13% Similarity=0.441 Sum_probs=11.3
Q ss_pred CCCCccccccccccc
Q 022374 266 LKKCSTCGSVFGQAQ 280 (298)
Q Consensus 266 ~~~C~~C~~~f~~~~ 280 (298)
...||.|...+...+
T Consensus 50 ~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 50 NGLCPACRKPYPEDP 64 (78)
T ss_dssp CSBCTTTCCBCSSCS
T ss_pred CCCCCCCCCccCCCc
Confidence 357888888887665
No 140
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=32.43 E-value=17 Score=21.10 Aligned_cols=9 Identities=22% Similarity=0.752 Sum_probs=6.4
Q ss_pred eEcCCCCee
Q 022374 253 YICSVCLSI 261 (298)
Q Consensus 253 yvCp~Clsi 261 (298)
|.||+|.+.
T Consensus 4 ~~CpvCk~q 12 (28)
T 2jvx_A 4 FCCPKCQYQ 12 (28)
T ss_dssp EECTTSSCE
T ss_pred ccCcccccc
Confidence 677777764
No 141
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=31.57 E-value=22 Score=28.35 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=20.0
Q ss_pred cceeEcCCCCeeec--C-----------C----------CCCCcccccccc
Q 022374 250 DMGYICSVCLSIYC--K-----------H----------LKKCSTCGSVFG 277 (298)
Q Consensus 250 ~~GyvCp~Clsi~C--~-----------~----------~~~C~~C~~~f~ 277 (298)
..-+.|..|+..|- + . +..||.||..-.
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~ 118 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDF 118 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCE
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCcc
Confidence 44688888888875 2 3 567999987743
No 142
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=31.44 E-value=15 Score=28.00 Aligned_cols=17 Identities=29% Similarity=0.892 Sum_probs=11.7
Q ss_pred eeccCc-ccceeEcCCCC
Q 022374 243 FCHKNT-IDMGYICSVCL 259 (298)
Q Consensus 243 ~CH~~~-~~~GyvCp~Cl 259 (298)
+|.+.. +.+|++|..|-
T Consensus 12 mC~KqpG~~iG~lCekcd 29 (109)
T 2k0a_A 12 MCLKQPGVQTGLLCEKCD 29 (109)
T ss_dssp BCCCCEEEEECEECGGGT
T ss_pred hccCCCcchhhhhhhhcC
Confidence 566665 67899876663
No 143
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=30.89 E-value=22 Score=26.22 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=21.6
Q ss_pred EcCCCCeeecC-----CCCCCccccccccccc
Q 022374 254 ICSVCLSIYCK-----HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 254 vCp~Clsi~C~-----~~~~C~~C~~~f~~~~ 280 (298)
-||-|..+.-- ....|..||+.|..+.
T Consensus 38 kCp~C~~~~~VFShA~t~V~C~~CgtvL~~PT 69 (86)
T 3iz6_X 38 KCQGCFNITTVFSHSQTVVVCPGCQTVLCQPT 69 (86)
T ss_dssp ECTTTCCEEEEETTCSSCCCCSSSCCCCSCCC
T ss_pred ECCCCCCeeEEEecCCcEEEccCCCCEeecCC
Confidence 49999877653 3479999999999776
No 144
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=30.64 E-value=65 Score=27.37 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=29.1
Q ss_pred cEEEEEEcCCCCChhhhHHHH-HHHHHHcCCeeEEEEEcC
Q 022374 145 PRILCLQGSPDGPEQYVAIMN-AIFSAQRSMVPIDSCYLG 183 (298)
Q Consensus 145 ~rILii~~S~d~~~qyi~lmN-~ifaAqk~~I~Idv~~L~ 183 (298)
.+||||.+|++..+---.+.+ .+..+++.+..|.++-|.
T Consensus 2 mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~ 41 (228)
T 3tem_A 2 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLY 41 (228)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETT
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 489999999876543344555 466667779999999995
No 145
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=30.62 E-value=27 Score=20.73 Aligned_cols=25 Identities=16% Similarity=0.606 Sum_probs=20.2
Q ss_pred ceeEcCCCCeeecCCCCCCcccccc
Q 022374 251 MGYICSVCLSIYCKHLKKCSTCGSV 275 (298)
Q Consensus 251 ~GyvCp~Clsi~C~~~~~C~~C~~~ 275 (298)
.-++||.|..+-=.....|-.|++.
T Consensus 5 gDW~C~~C~~~Nfa~R~~C~~C~~p 29 (33)
T 2k1p_A 5 NDWQCKTCSNVNWARRSECNMCNTP 29 (33)
T ss_dssp SSCBCSSSCCBCCTTCSBCSSSCCB
T ss_pred CCcccCCCCCccccccccccccCCc
Confidence 3478999988877788899999864
No 146
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.52 E-value=15 Score=25.52 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=20.7
Q ss_pred EcCCCCeeecC-----CCCCCccccccccccc
Q 022374 254 ICSVCLSIYCK-----HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 254 vCp~Clsi~C~-----~~~~C~~C~~~f~~~~ 280 (298)
-||-|..+.-- ....|..||+.|..+.
T Consensus 17 kCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PT 48 (63)
T 3j20_W 17 KCIDCGNEQIVFSHPATKVRCLICGATLVEPT 48 (63)
T ss_dssp ECSSSCCEEEEESSCSSCEECSSSCCEEEECC
T ss_pred ECCCCCCeeEEEecCCeEEEccCcCCEEecCC
Confidence 49999876553 3468999999998766
No 147
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.21 E-value=36 Score=20.15 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=8.6
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 11 k~~~C~~C~k~F~ 23 (46)
T 2eq0_A 11 KPYKCHECGKVFR 23 (46)
T ss_dssp CCEECTTTCCEES
T ss_pred CCeECCCCCchhC
Confidence 3477777776665
No 148
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.66 E-value=37 Score=20.04 Aligned_cols=13 Identities=23% Similarity=0.720 Sum_probs=8.8
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 11 ~~~~C~~C~k~f~ 23 (46)
T 2ytk_A 11 KPYKCNECGKVFT 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred CCEeCCcCCCccC
Confidence 3577777776665
No 149
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=29.48 E-value=22 Score=23.85 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=21.2
Q ss_pred CcccceeEcCCCCeee--cCC--CCCCcccccccc
Q 022374 247 NTIDMGYICSVCLSIY--CKH--LKKCSTCGSVFG 277 (298)
Q Consensus 247 ~~~~~GyvCp~Clsi~--C~~--~~~C~~C~~~f~ 277 (298)
++...-..||.|++.. -.. .-.|..||.+..
T Consensus 13 ki~~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~~ 47 (55)
T 2k4x_A 13 KLVRKHRFCPRCGPGVFLAEHADRYSCGRCGYTEF 47 (55)
T ss_dssp CCCCSSCCCTTTTTTCCCEECSSEEECTTTCCCEE
T ss_pred EEEEccccCcCCCCceeEeccCCEEECCCCCCEEE
Confidence 4555678999999832 121 348999998863
No 150
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.26 E-value=26 Score=23.74 Aligned_cols=30 Identities=30% Similarity=0.662 Sum_probs=20.6
Q ss_pred ceeEcCCCCeeecC------------------CCCCCccccccccccc
Q 022374 251 MGYICSVCLSIYCK------------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp~Clsi~C~------------------~~~~C~~C~~~f~~~~ 280 (298)
.-|.|+.|...|-. .+-.|..|+..|....
T Consensus 14 k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~ 61 (86)
T 1x6h_A 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61 (86)
T ss_dssp CCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHH
T ss_pred CCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHH
Confidence 45888888877752 1246888888887543
No 151
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=29.24 E-value=23 Score=18.14 Aligned_cols=10 Identities=30% Similarity=0.796 Sum_probs=5.7
Q ss_pred eEcCCCCeee
Q 022374 253 YICSVCLSIY 262 (298)
Q Consensus 253 yvCp~Clsi~ 262 (298)
|.|+.|...|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvh_A 4 FSCSLCPQRS 13 (27)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCcChhh
Confidence 6666655444
No 152
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=28.95 E-value=38 Score=19.99 Aligned_cols=13 Identities=23% Similarity=0.751 Sum_probs=8.5
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2ema_A 11 KRYKCNECGKVFS 23 (46)
T ss_dssp CCEECSSSCCEES
T ss_pred cCcCCCCCcchhC
Confidence 3477777766665
No 153
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.70 E-value=36 Score=22.88 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=9.4
Q ss_pred CCCcccccccccc
Q 022374 267 KKCSTCGSVFGQA 279 (298)
Q Consensus 267 ~~C~~C~~~f~~~ 279 (298)
..||+|+..+...
T Consensus 58 ~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 58 FKCPLCKTSVRKN 70 (73)
T ss_dssp CCCSSSCCCCCCC
T ss_pred CCCCCCCCcCCcc
Confidence 4788888877643
No 154
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=28.22 E-value=19 Score=24.29 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=18.0
Q ss_pred EcCCCCe--eecCC---CCCCccccccccccc
Q 022374 254 ICSVCLS--IYCKH---LKKCSTCGSVFGQAQ 280 (298)
Q Consensus 254 vCp~Cls--i~C~~---~~~C~~C~~~f~~~~ 280 (298)
.||.|.+ +.-.. -.+|..||+.+....
T Consensus 13 ~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~ 44 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGDMICPECGLVVGDRV 44 (58)
T ss_dssp SBTTBSSSCCEECSSSCCEECTTTCCEECCSC
T ss_pred cCcCCCCCceeEeCCCCeEEeCCCCCEEeccc
Confidence 5888875 22222 258999998887554
No 155
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=28.15 E-value=38 Score=19.93 Aligned_cols=12 Identities=33% Similarity=0.802 Sum_probs=7.9
Q ss_pred eeEcCCCCeeec
Q 022374 252 GYICSVCLSIYC 263 (298)
Q Consensus 252 GyvCp~Clsi~C 263 (298)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2el4_A 12 PYGCSQCAKTFS 23 (46)
T ss_dssp SEECSSSSCEES
T ss_pred ceECCCCCchhC
Confidence 477777766655
No 156
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=28.07 E-value=49 Score=19.77 Aligned_cols=26 Identities=23% Similarity=0.491 Sum_probs=19.8
Q ss_pred cceeEcCCCCeeecCCCCCCcccccc
Q 022374 250 DMGYICSVCLSIYCKHLKKCSTCGSV 275 (298)
Q Consensus 250 ~~GyvCp~Clsi~C~~~~~C~~C~~~ 275 (298)
..-+.|++|.-+-=.-...|..|++.
T Consensus 5 ~g~W~C~~C~~~N~~~~~kC~aC~tp 30 (33)
T 3gj3_B 5 SGTWDCDTCLVQNKPEAVKCVACETP 30 (33)
T ss_dssp -CCEECTTTCCEECTTCSBCTTTCCB
T ss_pred CCceeCCcccCCCccccCEEcccCCC
Confidence 34689999987766667889999763
No 157
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.84 E-value=43 Score=19.74 Aligned_cols=13 Identities=38% Similarity=0.920 Sum_probs=8.8
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 11 k~~~C~~C~k~F~ 23 (46)
T 2emh_A 11 RPYICTVCGKAFT 23 (46)
T ss_dssp CSEECTTTCCEES
T ss_pred CCcCCCCCCchhC
Confidence 3477877776665
No 158
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=27.74 E-value=89 Score=27.69 Aligned_cols=38 Identities=21% Similarity=0.181 Sum_probs=29.6
Q ss_pred EEEEEEcCCCCChhhhHHHH-HHHHHHcCCeeEEEEEcC
Q 022374 146 RILCLQGSPDGPEQYVAIMN-AIFSAQRSMVPIDSCYLG 183 (298)
Q Consensus 146 rILii~~S~d~~~qyi~lmN-~ifaAqk~~I~Idv~~L~ 183 (298)
+||||.++|+..+---.+.+ .+..+++.+..|.++-|.
T Consensus 24 KiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~DLy 62 (280)
T 4gi5_A 24 KVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSDLY 62 (280)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETT
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 79999999975543344555 578889999999999884
No 159
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=27.56 E-value=24 Score=31.22 Aligned_cols=28 Identities=21% Similarity=0.547 Sum_probs=20.6
Q ss_pred cccceeEcCCCCeeec--------CCCCCCcccccc
Q 022374 248 TIDMGYICSVCLSIYC--------KHLKKCSTCGSV 275 (298)
Q Consensus 248 ~~~~GyvCp~Clsi~C--------~~~~~C~~C~~~ 275 (298)
+....|.|+.|+...- ..|..|+.|+..
T Consensus 130 ~~~~~f~C~~C~~~~~v~~~~~~~~~P~~Cp~C~~~ 165 (279)
T 1ltl_A 130 IVKAVFECRGCMRHHAVTQSTNMITEPSLCSECGGR 165 (279)
T ss_dssp EEEEEEEETTTCCEEEEECSSSSCCCCSCCTTTCCC
T ss_pred EEEEEEEcCCCCCEEEEEecCCcccCCCcCCCCCCC
Confidence 3445799999996632 246799999986
No 160
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=27.55 E-value=16 Score=26.18 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=21.7
Q ss_pred eeEcCCCCeeecCC----CCCCccccccccccccCC
Q 022374 252 GYICSVCLSIYCKH----LKKCSTCGSVFGQAQTQS 283 (298)
Q Consensus 252 GyvCp~Clsi~C~~----~~~C~~C~~~f~~~~~~~ 283 (298)
-|.||.|...-=+. --.|.-|+..|.--.-.|
T Consensus 27 ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~ 62 (73)
T 1ffk_W 27 KYKCPVCGFPKLKRASTSIWVCGHCGYKIAGGAYTP 62 (73)
T ss_pred CccCCCCCCceeEEEEeEEEECCCCCcEEECCCccc
Confidence 59999998632221 136999999988665444
No 161
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=27.37 E-value=21 Score=24.68 Aligned_cols=15 Identities=13% Similarity=0.430 Sum_probs=11.7
Q ss_pred CCCCccccccccccc
Q 022374 266 LKKCSTCGSVFGQAQ 280 (298)
Q Consensus 266 ~~~C~~C~~~f~~~~ 280 (298)
...||+|+..+....
T Consensus 59 ~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 59 KGNCPVCRVPYPFGN 73 (85)
T ss_dssp CBCCTTTCCCCCTTC
T ss_pred CCCCCCCCCcCCHHh
Confidence 568999999887544
No 162
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=27.35 E-value=71 Score=26.43 Aligned_cols=40 Identities=10% Similarity=0.161 Sum_probs=28.5
Q ss_pred CcEEEEEEcCCCCChhhhHHHHHHHH-----HHcC--CeeEEEEEcC
Q 022374 144 QPRILCLQGSPDGPEQYVAIMNAIFS-----AQRS--MVPIDSCYLG 183 (298)
Q Consensus 144 ~~rILii~~S~d~~~qyi~lmN~ifa-----Aqk~--~I~Idv~~L~ 183 (298)
-++||+|+||+...+.--.+.+.+.. +++. ++.+.++-|.
T Consensus 11 ~~~il~i~GS~r~~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~ 57 (191)
T 3k1y_A 11 MRTLAVISAGLSTPSSTRQIADSISEAVTAAVSARGEALSVSTIELS 57 (191)
T ss_dssp SEEEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred hceEEEEECCCCCCCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHH
Confidence 47999999998766555556664433 3334 8999999995
No 163
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=27.24 E-value=26 Score=17.88 Aligned_cols=10 Identities=20% Similarity=0.590 Sum_probs=5.2
Q ss_pred eEcCCCCeee
Q 022374 253 YICSVCLSIY 262 (298)
Q Consensus 253 yvCp~Clsi~ 262 (298)
|.|+.|...|
T Consensus 3 ~~C~~C~k~f 12 (29)
T 2m0f_A 3 LKCRECGKQF 12 (29)
T ss_dssp EECTTTSCEE
T ss_pred ccCCCCCCcc
Confidence 5565555444
No 164
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=27.22 E-value=28 Score=21.68 Aligned_cols=12 Identities=25% Similarity=0.371 Sum_probs=8.6
Q ss_pred ceeEcCCCCeee
Q 022374 251 MGYICSVCLSIY 262 (298)
Q Consensus 251 ~GyvCp~Clsi~ 262 (298)
..|.||+|...+
T Consensus 8 ~~~~C~~C~~~i 19 (39)
T 2i5o_A 8 DQVPCEKCGSLV 19 (39)
T ss_dssp CEEECTTTCCEE
T ss_pred CCcccccccCcC
Confidence 358888887654
No 165
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=27.21 E-value=43 Score=19.75 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=8.7
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2ytj_A 11 KPYICAECGKAFT 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred cCeECCCCChhhC
Confidence 3477777776665
No 166
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=26.89 E-value=24 Score=25.70 Aligned_cols=27 Identities=22% Similarity=0.614 Sum_probs=21.0
Q ss_pred EcCCCCeeecC-----CCCCCccccccccccc
Q 022374 254 ICSVCLSIYCK-----HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 254 vCp~Clsi~C~-----~~~~C~~C~~~f~~~~ 280 (298)
-||-|..+.-- ....|..||+.|..+.
T Consensus 36 kCp~C~~~q~VFSha~t~V~C~~Cg~~L~~PT 67 (82)
T 3u5c_b 36 KCPGCLNITTVFSHAQTAVTCESCSTILCTPT 67 (82)
T ss_dssp ECTTSCSCEEEESBCSSCCCCSSSCCCCEECC
T ss_pred ECCCCCCeeEEEecCCeEEEccccCCEEeccC
Confidence 49999876543 3479999999998776
No 167
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=26.53 E-value=15 Score=28.07 Aligned_cols=32 Identities=22% Similarity=0.488 Sum_probs=22.5
Q ss_pred eeEcCCCCeeecCCC----CCCccccccccccccCC
Q 022374 252 GYICSVCLSIYCKHL----KKCSTCGSVFGQAQTQS 283 (298)
Q Consensus 252 GyvCp~Clsi~C~~~----~~C~~C~~~f~~~~~~~ 283 (298)
-|.||.|...-=+.. =.|.-|+.+|.--.-.|
T Consensus 36 ky~CpfCgk~~vKR~a~GIW~C~kCg~~~AGGAy~~ 71 (103)
T 4a17_Y 36 KYGCPFCGKVAVKRAAVGIWKCKPCKKIIAGGAWEL 71 (103)
T ss_dssp CEECTTTCCEEEEEEETTEEEETTTTEEEECCSSCS
T ss_pred CCCCCCCCCceeeecCcceEEcCCCCCEEeCCcccC
Confidence 599999987643322 26999999988655433
No 168
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.43 E-value=26 Score=17.85 Aligned_cols=14 Identities=36% Similarity=0.824 Sum_probs=8.6
Q ss_pred CCCccccccccccc
Q 022374 267 KKCSTCGSVFGQAQ 280 (298)
Q Consensus 267 ~~C~~C~~~f~~~~ 280 (298)
-.|+.||..|....
T Consensus 3 ~~C~~C~~~f~~~~ 16 (29)
T 2m0e_A 3 HKCPHCDKKFNQVG 16 (29)
T ss_dssp CCCSSCCCCCCTTT
T ss_pred CcCCCCCcccCCHH
Confidence 35777777776443
No 169
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.40 E-value=45 Score=19.60 Aligned_cols=12 Identities=25% Similarity=0.830 Sum_probs=8.2
Q ss_pred eeEcCCCCeeec
Q 022374 252 GYICSVCLSIYC 263 (298)
Q Consensus 252 GyvCp~Clsi~C 263 (298)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2epw_A 12 PCKCTECGKAFC 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeeCCCCCCccC
Confidence 477777766665
No 170
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=26.29 E-value=29 Score=17.83 Aligned_cols=11 Identities=27% Similarity=0.769 Sum_probs=6.2
Q ss_pred eeEcCCCCeee
Q 022374 252 GYICSVCLSIY 262 (298)
Q Consensus 252 GyvCp~Clsi~ 262 (298)
.|.|+.|...|
T Consensus 3 ~~~C~~C~~~f 13 (30)
T 2m0d_A 3 PYQCDYCGRSF 13 (30)
T ss_dssp CEECTTTCCEE
T ss_pred CccCCCCCccc
Confidence 36666665544
No 171
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=26.27 E-value=28 Score=17.92 Aligned_cols=10 Identities=20% Similarity=0.876 Sum_probs=4.9
Q ss_pred eEcCCCCeee
Q 022374 253 YICSVCLSIY 262 (298)
Q Consensus 253 yvCp~Clsi~ 262 (298)
|.|+.|...|
T Consensus 3 ~~C~~C~k~f 12 (29)
T 1rik_A 3 FACPECPKRF 12 (29)
T ss_dssp EECSSSSCEE
T ss_pred ccCCCCCchh
Confidence 5555554443
No 172
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.18 E-value=36 Score=23.49 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=18.0
Q ss_pred eeeee--ccCcccceeEcCCCCeeecC
Q 022374 240 ASCFC--HKNTIDMGYICSVCLSIYCK 264 (298)
Q Consensus 240 a~C~C--H~~~~~~GyvCp~Clsi~C~ 264 (298)
..|.- .++...++|.|..|.-.||.
T Consensus 13 ~~Cs~~~Ck~~~ll~f~C~~C~~~FC~ 39 (63)
T 1x4v_A 13 NKCERAGCRQREMMKLTCERCSRNFCI 39 (63)
T ss_dssp CCCCSTTCCCCCSSCCBCSSSCCBCCH
T ss_pred CCCCccCCCCCCccceECCCCCcccCc
Confidence 44554 33445679999999999994
No 173
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.11 E-value=20 Score=25.21 Aligned_cols=40 Identities=15% Similarity=0.324 Sum_probs=24.1
Q ss_pred eeeeeccCccc-c---eeEcCCCCeeecCCC--CCCccccccccccc
Q 022374 240 ASCFCHKNTID-M---GYICSVCLSIYCKHL--KKCSTCGSVFGQAQ 280 (298)
Q Consensus 240 a~C~CH~~~~~-~---GyvCp~Clsi~C~~~--~~C~~C~~~f~~~~ 280 (298)
..|+-.++.+. . ||.| +|.-.||..- +.=..|.--|+...
T Consensus 16 ~rC~~C~kk~gL~~~egf~C-rCg~~FC~~HRy~e~H~C~fDyk~~g 61 (67)
T 1x4w_A 16 RRCFQCQTKLELVQQELGSC-RCGYVFCMLHRLPEQHDCTFDHMGRG 61 (67)
T ss_dssp TBCSSSCCBCCHHHHHHHCC-SSSCCCCTTTCSTGGGTCSSCSSCSS
T ss_pred CcchhhCCeecccccCceEe-cCCCEehhccCCccccCCcccccccc
Confidence 45655544444 3 4999 9999999743 22334555555444
No 174
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.09 E-value=27 Score=18.00 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=5.9
Q ss_pred eEcCCCCeee
Q 022374 253 YICSVCLSIY 262 (298)
Q Consensus 253 yvCp~Clsi~ 262 (298)
|.|+.|...|
T Consensus 4 ~~C~~C~k~f 13 (27)
T 2kvg_A 4 YRCPLCRAGC 13 (27)
T ss_dssp EEETTTTEEE
T ss_pred cCCCCCCccc
Confidence 6666665544
No 175
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=26.07 E-value=29 Score=17.77 Aligned_cols=10 Identities=50% Similarity=1.099 Sum_probs=5.5
Q ss_pred eEcCCCCeee
Q 022374 253 YICSVCLSIY 262 (298)
Q Consensus 253 yvCp~Clsi~ 262 (298)
|.|+.|...|
T Consensus 4 ~~C~~C~k~f 13 (28)
T 2kvf_A 4 YSCSVCGKRF 13 (28)
T ss_dssp EECSSSCCEE
T ss_pred ccCCCCCccc
Confidence 6666555444
No 176
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.99 E-value=45 Score=19.66 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=8.4
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2ep2_A 11 KPYECSICGKSFT 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred cCcCCCCCCcccC
Confidence 3477777766655
No 177
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.96 E-value=47 Score=19.61 Aligned_cols=13 Identities=15% Similarity=0.557 Sum_probs=8.1
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
..|.|+.|...|-
T Consensus 11 k~~~C~~C~k~F~ 23 (46)
T 2emf_A 11 KHFECTECGKAFT 23 (46)
T ss_dssp CCEECSSSCCEES
T ss_pred CCeECCCCCchhC
Confidence 3477777666554
No 178
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.94 E-value=20 Score=23.83 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=8.5
Q ss_pred CCCCcccccccc
Q 022374 266 LKKCSTCGSVFG 277 (298)
Q Consensus 266 ~~~C~~C~~~f~ 277 (298)
...||+|+..+.
T Consensus 56 ~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 56 ANTCPTCRKKIN 67 (69)
T ss_dssp CSSCTTTCCCCC
T ss_pred CCCCCCCCCccC
Confidence 457888887664
No 179
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.85 E-value=47 Score=19.55 Aligned_cols=13 Identities=38% Similarity=0.789 Sum_probs=8.2
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
..|.|+.|...|-
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2eml_A 11 KPYECSVCGKAFS 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred CCeeCCCcCCccC
Confidence 3477777766554
No 180
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.71 E-value=47 Score=19.54 Aligned_cols=13 Identities=23% Similarity=0.720 Sum_probs=8.5
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
..|.|+.|...|-
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2yu8_A 11 KPYKCNECGKVFT 23 (46)
T ss_dssp SSEECSSSCCEES
T ss_pred CCeECCcCCchhC
Confidence 3477777766655
No 181
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.38 E-value=48 Score=19.44 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=8.0
Q ss_pred eeEcCCCCeeec
Q 022374 252 GYICSVCLSIYC 263 (298)
Q Consensus 252 GyvCp~Clsi~C 263 (298)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2en8_A 12 SHTCDECGKNFC 23 (46)
T ss_dssp SEECTTTCCEES
T ss_pred CeECCCcCcccC
Confidence 477777766664
No 182
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.22 E-value=50 Score=19.44 Aligned_cols=13 Identities=23% Similarity=0.572 Sum_probs=8.4
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 11 k~~~C~~C~k~F~ 23 (46)
T 2emy_A 11 NPYECHECGKAFS 23 (46)
T ss_dssp CCEECSSSCCEES
T ss_pred cCcCCCCCCcccC
Confidence 3477777766655
No 183
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.10 E-value=29 Score=22.62 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=21.6
Q ss_pred ceeEcCCCCeee-----------c-CCCCCCc-cccccccccc
Q 022374 251 MGYICSVCLSIY-----------C-KHLKKCS-TCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp~Clsi~-----------C-~~~~~C~-~C~~~f~~~~ 280 (298)
.-|.|+.|...| + +.|-.|+ .||..|....
T Consensus 9 ~~~~C~~C~k~f~~~~L~~H~~~~~~~p~~C~~~C~k~f~~~~ 51 (66)
T 2eod_A 9 RTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTVARE 51 (66)
T ss_dssp CEEECSSSCCEEEHHHHHHHHHHCSSSEEECTTCCSCCEEETT
T ss_pred CCeeccccCCccCHHHHHHHHHHcCCcCccCCcccCcccccHH
Confidence 358999998766 2 2345799 9999887653
No 184
>1bi6_H Bromelain inhibitor VI; cysteine protease inhibitor; NMR {Ananas comosus} SCOP: g.3.12.1 g.3.12.1 PDB: 2bi6_H
Probab=25.01 E-value=23 Score=21.48 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=15.6
Q ss_pred eeecCCCCCCccccccccccc
Q 022374 260 SIYCKHLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 260 si~C~~~~~C~~C~~~f~~~~ 280 (298)
-.|.+-|..|.+|+..|..-.
T Consensus 9 dtysdcpgfcktckaefgkyi 29 (41)
T 1bi6_H 9 DTYSDCPGFCKTCKAEFGKYI 29 (41)
T ss_dssp CCCSSCCTTCSSEEEETTEEE
T ss_pred ccccCCchHHHHHHHHhCceE
Confidence 345667889999999887543
No 185
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=25.01 E-value=30 Score=25.91 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=12.1
Q ss_pred CCCCccccccccccc
Q 022374 266 LKKCSTCGSVFGQAQ 280 (298)
Q Consensus 266 ~~~C~~C~~~f~~~~ 280 (298)
...||+|+..+....
T Consensus 58 ~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 58 GSYCPSCRYPCFPTD 72 (116)
T ss_dssp CSBCTTTCCBCCGGG
T ss_pred cCcCCCCCCCCCHhh
Confidence 568999999988654
No 186
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.98 E-value=50 Score=19.47 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=8.4
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
..|.|+.|...|-
T Consensus 11 ~~~~C~~C~k~f~ 23 (46)
T 2em5_A 11 KSHQCHECGRGFT 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred CCeECCcCCCccC
Confidence 3477777766664
No 187
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=24.81 E-value=42 Score=23.96 Aligned_cols=26 Identities=19% Similarity=0.627 Sum_probs=19.7
Q ss_pred eeeee--ccCcccceeEcCCCCeeecCC
Q 022374 240 ASCFC--HKNTIDMGYICSVCLSIYCKH 265 (298)
Q Consensus 240 a~C~C--H~~~~~~GyvCp~Clsi~C~~ 265 (298)
..|.- .++.--++|.|..|.-+||.-
T Consensus 15 ~~Cs~~~C~~~dflpf~C~~C~~~FC~~ 42 (75)
T 1wys_A 15 QHCQVQHCRQRDFLPFVCDGCSGIFCLE 42 (75)
T ss_dssp CCCSCTTTCCCSCCCEECTTTCCEECST
T ss_pred CCcCcccCCCccceeeECcccCcCcCcc
Confidence 45654 455566899999999999963
No 188
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.78 E-value=51 Score=19.32 Aligned_cols=13 Identities=23% Similarity=0.726 Sum_probs=8.5
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
..|.|+.|...|-
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2eme_A 11 KPYVCDYCGKAFG 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred CCeECCCCChhhC
Confidence 3477777766664
No 189
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=24.68 E-value=50 Score=19.38 Aligned_cols=13 Identities=23% Similarity=0.513 Sum_probs=8.1
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
..|.|+.|...|-
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2em9_A 11 KPYNCKECGKSFR 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred cCeECCccccccC
Confidence 3477777666654
No 190
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=24.55 E-value=14 Score=27.64 Aligned_cols=32 Identities=25% Similarity=0.511 Sum_probs=22.5
Q ss_pred eeEcCCCCeeecCCC----CCCccccccccccccCC
Q 022374 252 GYICSVCLSIYCKHL----KKCSTCGSVFGQAQTQS 283 (298)
Q Consensus 252 GyvCp~Clsi~C~~~----~~C~~C~~~f~~~~~~~ 283 (298)
-|.||.|...-=+.. =.|.-|+.+|.--.-.|
T Consensus 36 ky~CpfCgk~~vkR~a~GIW~C~~Cg~~~AGGAy~~ 71 (92)
T 3iz5_m 36 KYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTM 71 (92)
T ss_dssp CBCCTTTCSSCBEEEETTEEECSSSCCEEECCSSSS
T ss_pred cccCcccCCCeeEecCcceEEcCCCCCEEeCCcccC
Confidence 599999987743322 26999999988655444
No 191
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=24.51 E-value=28 Score=25.80 Aligned_cols=17 Identities=12% Similarity=-0.126 Sum_probs=11.9
Q ss_pred CCCCccccccccccccC
Q 022374 266 LKKCSTCGSVFGQAQTQ 282 (298)
Q Consensus 266 ~~~C~~C~~~f~~~~~~ 282 (298)
...||.|+..|...-+.
T Consensus 57 ~~~cP~~~~~l~~~~L~ 73 (98)
T 1wgm_A 57 DQTDPFNRSPLTMDQIR 73 (98)
T ss_dssp SCBCTTTCSBCCTTTSE
T ss_pred CCCCCCCCCCCChhhce
Confidence 45799999888755433
No 192
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.50 E-value=11 Score=27.62 Aligned_cols=32 Identities=25% Similarity=0.556 Sum_probs=22.4
Q ss_pred eeEcCCCCeeecCCC----CCCccccccccccccCC
Q 022374 252 GYICSVCLSIYCKHL----KKCSTCGSVFGQAQTQS 283 (298)
Q Consensus 252 GyvCp~Clsi~C~~~----~~C~~C~~~f~~~~~~~ 283 (298)
-|.||.|...-=+.. =.|.-|+.+|.--.-.|
T Consensus 35 ky~CpfCGk~~vkR~a~GIW~C~kCg~~~AGGAy~~ 70 (83)
T 3j21_i 35 KHTCPVCGRKAVKRISTGIWQCQKCGATFAGGAYLP 70 (83)
T ss_dssp CBCCSSSCSSCEEEEETTEEEETTTCCEEECCSSSS
T ss_pred ccCCCCCCCceeEecCcCeEEcCCCCCEEeCCcccc
Confidence 599999987732221 26999999988655444
No 193
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=24.48 E-value=33 Score=25.13 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=18.5
Q ss_pred eeeee--ccCcccceeEcCCCCeeecC
Q 022374 240 ASCFC--HKNTIDMGYICSVCLSIYCK 264 (298)
Q Consensus 240 a~C~C--H~~~~~~GyvCp~Clsi~C~ 264 (298)
..|.- .++..-++|.|..|.-.||.
T Consensus 26 ~~C~~~~Ck~~~~l~f~C~~C~~~FC~ 52 (86)
T 1wfe_A 26 YSCSFKGCTDVELVAVICPYCEKNFCL 52 (86)
T ss_dssp EECCSTTCCCEESSCEECTTTCCEECG
T ss_pred CCCCCcCCCCCCccceECCCCCccccc
Confidence 34654 33445589999999999995
No 194
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.22 E-value=53 Score=19.32 Aligned_cols=13 Identities=23% Similarity=0.754 Sum_probs=8.5
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
..|.|+.|...|-
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2emp_A 11 KPYMCNECGKAFS 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred cCeECCCCCchhC
Confidence 3477777766665
No 195
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.20 E-value=51 Score=19.44 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=8.6
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 11 k~~~C~~C~k~F~ 23 (46)
T 2eoo_A 11 RPYGCNECGKNFG 23 (46)
T ss_dssp CCEECSSSCCEES
T ss_pred CCEEccccCcccC
Confidence 3477777766665
No 196
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.19 E-value=52 Score=19.34 Aligned_cols=12 Identities=25% Similarity=0.772 Sum_probs=7.5
Q ss_pred eeEcCCCCeeec
Q 022374 252 GYICSVCLSIYC 263 (298)
Q Consensus 252 GyvCp~Clsi~C 263 (298)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ene_A 12 PYKCNECGKVFR 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CeECCCCCchhC
Confidence 477776666554
No 197
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=24.18 E-value=52 Score=19.40 Aligned_cols=12 Identities=33% Similarity=0.791 Sum_probs=8.0
Q ss_pred eeEcCCCCeeec
Q 022374 252 GYICSVCLSIYC 263 (298)
Q Consensus 252 GyvCp~Clsi~C 263 (298)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2el6_A 12 PYKCSQCEKSFS 23 (46)
T ss_dssp SEECSSSSCEES
T ss_pred CeECCCCCcccC
Confidence 477777766655
No 198
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.17 E-value=32 Score=19.00 Aligned_cols=13 Identities=15% Similarity=0.595 Sum_probs=9.0
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2els_A 8 KIFTCEYCNKVFK 20 (36)
T ss_dssp CCEECTTTCCEES
T ss_pred CCEECCCCCceeC
Confidence 3588887776664
No 199
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=24.08 E-value=32 Score=18.68 Aligned_cols=13 Identities=38% Similarity=1.257 Sum_probs=8.0
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
..|.|+.|...|-
T Consensus 6 k~~~C~~C~k~f~ 18 (35)
T 2elx_A 6 SGYVCALCLKKFV 18 (35)
T ss_dssp CSEECSSSCCEES
T ss_pred CCeECCCCcchhC
Confidence 3477777665553
No 200
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=23.97 E-value=65 Score=19.36 Aligned_cols=26 Identities=31% Similarity=0.586 Sum_probs=19.3
Q ss_pred cceeEcCCCCeeecCCCCCCcccccc
Q 022374 250 DMGYICSVCLSIYCKHLKKCSTCGSV 275 (298)
Q Consensus 250 ~~GyvCp~Clsi~C~~~~~C~~C~~~ 275 (298)
...|.|++|+-.-=.-...|..|++.
T Consensus 5 ~G~W~C~~C~v~N~~~~~kC~aCet~ 30 (34)
T 3gj5_B 5 SGSWDCEVCLVQNKADSTKCIACESA 30 (34)
T ss_dssp -CCEECTTTCCEECSSCSBCTTTCCB
T ss_pred CCceECCeeEeECccccCEEcccCCc
Confidence 45689999987665556789999864
No 201
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=23.96 E-value=21 Score=25.97 Aligned_cols=27 Identities=19% Similarity=0.533 Sum_probs=21.0
Q ss_pred EcCCCCeeecC-----CCCCCccccccccccc
Q 022374 254 ICSVCLSIYCK-----HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 254 vCp~Clsi~C~-----~~~~C~~C~~~f~~~~ 280 (298)
-||-|..+.-- ....|..||+.|..+.
T Consensus 34 kCp~C~n~q~VFShA~t~V~C~~Cg~~L~~PT 65 (81)
T 2xzm_6 34 KCAQCQNIQMIFSNAQSTIICEKCSAILCKPT 65 (81)
T ss_dssp ECSSSCCEEEEETTCSSCEECSSSCCEEEEEC
T ss_pred ECCCCCCeeEEEecCccEEEccCCCCEEeecC
Confidence 59999876553 3478999999998776
No 202
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.95 E-value=49 Score=19.47 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=8.7
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
..|.|+.|...|-
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2ysp_A 11 KPYKCEKCGKGYN 23 (46)
T ss_dssp CSEEETTTTEEES
T ss_pred CCeECCCCCCccC
Confidence 3477777776665
No 203
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=23.75 E-value=18 Score=26.67 Aligned_cols=30 Identities=17% Similarity=0.558 Sum_probs=21.3
Q ss_pred ceeEcCCCCeeecC--------CC-CCCccccccccccc
Q 022374 251 MGYICSVCLSIYCK--------HL-KKCSTCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp~Clsi~C~--------~~-~~C~~C~~~f~~~~ 280 (298)
....|..|+=.||. .. ..||.|...+....
T Consensus 34 ~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (100)
T 3lrq_A 34 DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRE 72 (100)
T ss_dssp SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHH
Confidence 35566778888884 23 68999999986544
No 204
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.73 E-value=54 Score=19.27 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=7.7
Q ss_pred eeEcCCCCeeec
Q 022374 252 GYICSVCLSIYC 263 (298)
Q Consensus 252 GyvCp~Clsi~C 263 (298)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2em7_A 12 PYKCEECGKGFI 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CccCCCccchhC
Confidence 477777666554
No 205
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.62 E-value=42 Score=21.89 Aligned_cols=29 Identities=24% Similarity=0.572 Sum_probs=17.1
Q ss_pred CcccceeEcCCCCe--eecCC--CCCCcccccc
Q 022374 247 NTIDMGYICSVCLS--IYCKH--LKKCSTCGSV 275 (298)
Q Consensus 247 ~~~~~GyvCp~Cls--i~C~~--~~~C~~C~~~ 275 (298)
++...-=.||.|++ ..=.. .-.|+.||.+
T Consensus 14 kv~~~~k~CP~CG~~~fm~~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 14 KVIRKNKFCPRCGPGVFMADHGDRWACGKCGYT 46 (50)
T ss_dssp CEECSSEECSSSCSSCEEEECSSEEECSSSCCE
T ss_pred EEEEecccCCCCCCceEEecCCCeEECCCCCCE
Confidence 44444566888887 32222 2478888864
No 206
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=23.62 E-value=28 Score=17.58 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=9.1
Q ss_pred CCccccccccccc
Q 022374 268 KCSTCGSVFGQAQ 280 (298)
Q Consensus 268 ~C~~C~~~f~~~~ 280 (298)
.|..||..|....
T Consensus 3 ~C~~C~k~f~~~~ 15 (27)
T 1znf_A 3 KCGLCERSFVEKS 15 (27)
T ss_dssp BCSSSCCBCSSHH
T ss_pred cCCCCCCcCCCHH
Confidence 5778888877543
No 207
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.59 E-value=54 Score=19.24 Aligned_cols=12 Identities=25% Similarity=0.634 Sum_probs=7.4
Q ss_pred eeEcCCCCeeec
Q 022374 252 GYICSVCLSIYC 263 (298)
Q Consensus 252 GyvCp~Clsi~C 263 (298)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2ytg_A 12 PFKCGECGKSYN 23 (46)
T ss_dssp SEECTTTCCEES
T ss_pred CeECCCCCcccC
Confidence 477776665554
No 208
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=23.49 E-value=23 Score=18.25 Aligned_cols=10 Identities=30% Similarity=1.032 Sum_probs=5.2
Q ss_pred Cccccccccc
Q 022374 269 CSTCGSVFGQ 278 (298)
Q Consensus 269 C~~C~~~f~~ 278 (298)
|..||..|..
T Consensus 5 C~~C~~~f~~ 14 (29)
T 1ard_A 5 CEVCTRAFAR 14 (29)
T ss_dssp CTTTCCBCSS
T ss_pred CCCCCcccCC
Confidence 4555555543
No 209
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.44 E-value=40 Score=19.86 Aligned_cols=12 Identities=25% Similarity=0.819 Sum_probs=7.5
Q ss_pred eeEcCCCCeeec
Q 022374 252 GYICSVCLSIYC 263 (298)
Q Consensus 252 GyvCp~Clsi~C 263 (298)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2eoe_A 12 PYKCNECGKVFT 23 (46)
T ss_dssp SSEETTTTEECS
T ss_pred CeECCCcChhhC
Confidence 467776666554
No 210
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=23.43 E-value=19 Score=25.98 Aligned_cols=28 Identities=18% Similarity=0.504 Sum_probs=17.6
Q ss_pred eeEcCCCCeeecC-------------CCCCCcccccccccc
Q 022374 252 GYICSVCLSIYCK-------------HLKKCSTCGSVFGQA 279 (298)
Q Consensus 252 GyvCp~Clsi~C~-------------~~~~C~~C~~~f~~~ 279 (298)
-|.|+.|...|-. .|-.|..|+..|...
T Consensus 42 ~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~~~ 82 (107)
T 1wjp_A 42 AAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFKSS 82 (107)
T ss_dssp SBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGGGTEECSSH
T ss_pred CccCCCCCCccCCHHHHHHHHHcCCCCCccCccccchhCCH
Confidence 3677777766642 234677777777654
No 211
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.42 E-value=56 Score=19.20 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=8.3
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 11 ~~~~C~~C~k~f~ 23 (46)
T 2ep0_A 11 KPYKCDVCHKSFR 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred CCeeCcccCcccC
Confidence 3477777766654
No 212
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.37 E-value=57 Score=19.14 Aligned_cols=12 Identities=17% Similarity=0.514 Sum_probs=8.1
Q ss_pred eeEcCCCCeeec
Q 022374 252 GYICSVCLSIYC 263 (298)
Q Consensus 252 GyvCp~Clsi~C 263 (298)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2enc_A 12 PFKCEECGKGFY 23 (46)
T ss_dssp SEECSSSCCEES
T ss_pred CcCCCCCCCcCC
Confidence 477777766664
No 213
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.30 E-value=56 Score=19.14 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=8.5
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
..|.|+.|...|-
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2emm_A 11 RPHKCNECGKSFI 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred CCeeCCCCChhhC
Confidence 3477777766665
No 214
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=23.28 E-value=34 Score=18.69 Aligned_cols=12 Identities=33% Similarity=1.179 Sum_probs=7.9
Q ss_pred eeEcCCCCeeec
Q 022374 252 GYICSVCLSIYC 263 (298)
Q Consensus 252 GyvCp~Clsi~C 263 (298)
-|.|+.|...|-
T Consensus 7 ~~~C~~C~k~f~ 18 (35)
T 1srk_A 7 PFVCRICLSAFT 18 (35)
T ss_dssp CEECSSSCCEES
T ss_pred CeeCCCCCcccC
Confidence 477877766554
No 215
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.24 E-value=38 Score=20.01 Aligned_cols=12 Identities=25% Similarity=0.819 Sum_probs=6.1
Q ss_pred eeEcCCCCeeec
Q 022374 252 GYICSVCLSIYC 263 (298)
Q Consensus 252 GyvCp~Clsi~C 263 (298)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2ytn_A 12 PYKCNECGKVFT 23 (46)
T ss_dssp SCBCTTTCCBCS
T ss_pred CeECCCCCCeeC
Confidence 355555554443
No 216
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=23.06 E-value=75 Score=21.41 Aligned_cols=25 Identities=24% Similarity=0.571 Sum_probs=21.2
Q ss_pred ceeEcCCCCeeecCCCCCCcccccc
Q 022374 251 MGYICSVCLSIYCKHLKKCSTCGSV 275 (298)
Q Consensus 251 ~GyvCp~Clsi~C~~~~~C~~C~~~ 275 (298)
.-.||=.|.+..-.--+.|..||..
T Consensus 18 ~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 18 LKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCC
T ss_pred chhhhccccCcCCcccccccCCCCC
Confidence 3589999999988888999999954
No 217
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=22.90 E-value=1.1e+02 Score=25.32 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=30.0
Q ss_pred CcEEEEEEcCCCCChhhhHHHHHHHHHHcCCeeEEEEEcC
Q 022374 144 QPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYLG 183 (298)
Q Consensus 144 ~~rILii~~S~d~~~qyi~lmN~ifaAqk~~I~Idv~~L~ 183 (298)
.++|+||.||....+.--.+.+.+....+.++.++++-|.
T Consensus 2 ~k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~ 41 (190)
T 3u7r_A 2 VKTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIG 41 (190)
T ss_dssp CEEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGG
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEecc
Confidence 4689999999765554456677766666788999888874
No 218
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=22.87 E-value=66 Score=23.18 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=23.2
Q ss_pred CcccceeEcCCCCeeecCCC-CCCcccccc
Q 022374 247 NTIDMGYICSVCLSIYCKHL-KKCSTCGSV 275 (298)
Q Consensus 247 ~~~~~GyvCp~Clsi~C~~~-~~C~~C~~~ 275 (298)
++....+-|--|..+.-+.+ .-||.||-.
T Consensus 10 ~~k~~iLrC~aCf~~t~~~~k~FCp~CGn~ 39 (79)
T 2con_A 10 EARSYILRCHGCFKTTSDMNRVFCGHCGNK 39 (79)
T ss_dssp CCCCEEEECSSSCCEESCSSCCSCSSSCCS
T ss_pred eeeeeeeEecccceECCCcccccccccCcc
Confidence 34456888999999998765 589999974
No 219
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.83 E-value=57 Score=19.19 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=8.5
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2em8_A 11 KPYKCVECGKGYK 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred CCeECcccCchhC
Confidence 3477777776665
No 220
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.81 E-value=34 Score=18.77 Aligned_cols=13 Identities=23% Similarity=0.472 Sum_probs=8.5
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
..|.|+.|...|-
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2elt_A 8 KPYKCPQCSYASA 20 (36)
T ss_dssp CSEECSSSSCEES
T ss_pred CCCCCCCCCcccC
Confidence 3588887766553
No 221
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.74 E-value=57 Score=19.14 Aligned_cols=13 Identities=31% Similarity=0.633 Sum_probs=8.5
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
..|.|+.|...|-
T Consensus 11 k~~~C~~C~k~f~ 23 (46)
T 2ytd_A 11 KPYKCSECGKAFH 23 (46)
T ss_dssp CSEECSSSCCEES
T ss_pred cCeECCCCCCeeC
Confidence 3477777766665
No 222
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=22.60 E-value=38 Score=27.09 Aligned_cols=30 Identities=27% Similarity=0.707 Sum_probs=22.9
Q ss_pred ceeEcCCCCeeecC--------------CCCCCccccccccccc
Q 022374 251 MGYICSVCLSIYCK--------------HLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp~Clsi~C~--------------~~~~C~~C~~~f~~~~ 280 (298)
..|.|+.|...|-. .|-.|+.|+..|....
T Consensus 132 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~ 175 (190)
T 2i13_A 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRD 175 (190)
T ss_dssp CCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEESSHH
T ss_pred CCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccCCHH
Confidence 35899999988863 3457999999988654
No 223
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.51 E-value=22 Score=23.30 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=10.9
Q ss_pred ceeEcCCCCeeecC
Q 022374 251 MGYICSVCLSIYCK 264 (298)
Q Consensus 251 ~GyvCp~Clsi~C~ 264 (298)
..|.||.|...|--
T Consensus 11 ~~~~CPrCn~~f~~ 24 (49)
T 2e72_A 11 GRKICPRCNAQFRV 24 (49)
T ss_dssp SCCCCTTTCCCCSS
T ss_pred CceeCCcccccccc
Confidence 46889988888764
No 224
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.51 E-value=55 Score=19.20 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=8.4
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 11 ~~~~C~~C~k~f~ 23 (46)
T 2en1_A 11 KPFKCEECGKRFT 23 (46)
T ss_dssp CSEEETTTTEEES
T ss_pred CCeeCCCCCcccC
Confidence 3477777766665
No 225
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=22.26 E-value=15 Score=27.47 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=21.9
Q ss_pred eeEcCCCCeeecCCC----CCCccccccccccccCC
Q 022374 252 GYICSVCLSIYCKHL----KKCSTCGSVFGQAQTQS 283 (298)
Q Consensus 252 GyvCp~Clsi~C~~~----~~C~~C~~~f~~~~~~~ 283 (298)
-|.||.|...-=+.. =.|.-|+.+|.--.-.|
T Consensus 36 ky~CpfCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~ 71 (92)
T 3izc_m 36 RYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTV 71 (92)
T ss_dssp CCCCSSSCSSCCEEEETTEEECTTTCCEEECCSSSS
T ss_pred CCcCCCCCCceeeecccceEEcCCCCCEEeCCcccC
Confidence 599999986532221 26999999988655444
No 226
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.14 E-value=37 Score=18.74 Aligned_cols=13 Identities=23% Similarity=0.654 Sum_probs=8.4
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2elv_A 8 LLYDCHICERKFK 20 (36)
T ss_dssp CCEECSSSCCEES
T ss_pred CCeECCCCCCccC
Confidence 3588887766554
No 227
>1q1s_A Large T antigen; importin alpha/karyopherin alpha, nuclear localisation sequence (NLS) recognition, phosphorylation; 2.30A {Synthetic} PDB: 1q1t_A
Probab=21.86 E-value=27 Score=19.72 Aligned_cols=9 Identities=33% Similarity=0.560 Sum_probs=5.5
Q ss_pred ccccccCCC
Q 022374 289 TNRKRKTTD 297 (298)
Q Consensus 289 ~~~~~~~~~ 297 (298)
+|||||+.|
T Consensus 17 PKkKrk~~d 25 (26)
T 1q1s_A 17 PKKKRKVEX 25 (26)
T ss_pred CccccccCC
Confidence 466666654
No 228
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.83 E-value=62 Score=18.96 Aligned_cols=12 Identities=25% Similarity=0.592 Sum_probs=8.2
Q ss_pred eeEcCCCCeeec
Q 022374 252 GYICSVCLSIYC 263 (298)
Q Consensus 252 GyvCp~Clsi~C 263 (298)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2yso_A 12 SHQCRECGEIFF 23 (46)
T ss_dssp CEECTTTCCEES
T ss_pred CEEccccChhhC
Confidence 477777776665
No 229
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.77 E-value=36 Score=17.62 Aligned_cols=13 Identities=23% Similarity=0.761 Sum_probs=8.8
Q ss_pred CCccccccccccc
Q 022374 268 KCSTCGSVFGQAQ 280 (298)
Q Consensus 268 ~C~~C~~~f~~~~ 280 (298)
.|..||..|....
T Consensus 4 ~C~~C~k~f~~~~ 16 (30)
T 1paa_A 4 ACGLCNRAFTRRD 16 (30)
T ss_dssp BCTTTCCBCSSSH
T ss_pred CCcccCcccCChH
Confidence 5777887776543
No 230
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=21.69 E-value=37 Score=17.37 Aligned_cols=13 Identities=15% Similarity=0.439 Sum_probs=8.8
Q ss_pred CCccccccccccc
Q 022374 268 KCSTCGSVFGQAQ 280 (298)
Q Consensus 268 ~C~~C~~~f~~~~ 280 (298)
.|..||..|....
T Consensus 4 ~C~~C~k~f~~~~ 16 (30)
T 1klr_A 4 QCQYCEFRSADSS 16 (30)
T ss_dssp CCSSSSCCCSCSH
T ss_pred cCCCCCCccCCHH
Confidence 5777777776543
No 231
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.57 E-value=61 Score=19.00 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=8.7
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 11 ~~~~C~~C~k~f~ 23 (46)
T 2en6_A 11 KPYGCNECGKTFS 23 (46)
T ss_dssp CCEEETTTTEEES
T ss_pred cCeECCCCCcccC
Confidence 3477777776665
No 232
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=21.48 E-value=31 Score=26.08 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=20.6
Q ss_pred eccCc--ccceeEcCCCCeeecCCCCCCcccccccc
Q 022374 244 CHKNT--IDMGYICSVCLSIYCKHLKKCSTCGSVFG 277 (298)
Q Consensus 244 CH~~~--~~~GyvCp~Clsi~C~~~~~C~~C~~~f~ 277 (298)
|+..+ ....|.|+.|..-|-.. +.||.|+..|-
T Consensus 38 Cq~eL~~~g~~~hC~~C~~~f~~~-a~CPdC~q~Le 72 (101)
T 2jne_A 38 CQHVLDQDNGHARCRSCGEFIEMK-ALCPDCHQPLQ 72 (101)
T ss_dssp SCSBEEEETTEEEETTTCCEEEEE-EECTTTCSBCE
T ss_pred CCCcceecCCEEECccccchhhcc-ccCcchhhHHH
Confidence 55555 23345599998865433 46888887654
No 233
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.36 E-value=38 Score=18.67 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=8.3
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 8 k~~~C~~C~k~f~ 20 (36)
T 2elq_A 8 KPFKCSLCEYATR 20 (36)
T ss_dssp CSEECSSSSCEES
T ss_pred CCccCCCCCchhC
Confidence 3478877766553
No 234
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=26.52 E-value=20 Score=18.17 Aligned_cols=12 Identities=42% Similarity=0.983 Sum_probs=6.9
Q ss_pred Cccccccccccc
Q 022374 269 CSTCGSVFGQAQ 280 (298)
Q Consensus 269 C~~C~~~f~~~~ 280 (298)
|..||..|....
T Consensus 5 C~~C~k~f~~~~ 16 (26)
T 2lvu_A 5 CERCGKRFVQSS 16 (26)
Confidence 556666666443
No 235
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.93 E-value=39 Score=18.76 Aligned_cols=13 Identities=15% Similarity=0.398 Sum_probs=8.3
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 8 k~~~C~~C~k~f~ 20 (37)
T 2elp_A 8 RAMKCPYCDFYFM 20 (37)
T ss_dssp CCEECSSSSCEEC
T ss_pred CCeECCCCChhhc
Confidence 3588887765553
No 236
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.89 E-value=49 Score=24.49 Aligned_cols=32 Identities=22% Similarity=0.457 Sum_probs=23.3
Q ss_pred ccceeEcCCCCeeecC-----------C-------CCCCccccccccccc
Q 022374 249 IDMGYICSVCLSIYCK-----------H-------LKKCSTCGSVFGQAQ 280 (298)
Q Consensus 249 ~~~GyvCp~Clsi~C~-----------~-------~~~C~~C~~~f~~~~ 280 (298)
....|.|+.|...|-. . |-.|..||..|....
T Consensus 15 gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~ 64 (102)
T 2ghf_A 15 VEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYD 64 (102)
T ss_dssp CCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTH
T ss_pred CCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHH
Confidence 4456999999887752 1 337999999998654
No 237
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.73 E-value=46 Score=19.52 Aligned_cols=12 Identities=17% Similarity=0.376 Sum_probs=6.0
Q ss_pred eeEcCCCCeeec
Q 022374 252 GYICSVCLSIYC 263 (298)
Q Consensus 252 GyvCp~Clsi~C 263 (298)
-|.|+.|...|-
T Consensus 12 ~~~C~~C~k~f~ 23 (46)
T 2eop_A 12 PHECRECGKSFS 23 (46)
T ss_dssp SCBCTTTCCBCS
T ss_pred CeeCCCCCchhC
Confidence 355555554443
No 238
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=20.63 E-value=37 Score=23.94 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=10.5
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
-||+|++|+..|=
T Consensus 35 p~~~C~~CGE~~~ 47 (78)
T 3ga8_A 35 HGLYCVHCEESIM 47 (78)
T ss_dssp EEEEETTTCCEEC
T ss_pred eeEECCCCCCEEE
Confidence 4999999987763
No 239
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=20.59 E-value=56 Score=22.24 Aligned_cols=22 Identities=27% Similarity=0.679 Sum_probs=14.0
Q ss_pred eEcCCCCeeecCCCCCCcccccc
Q 022374 253 YICSVCLSIYCKHLKKCSTCGSV 275 (298)
Q Consensus 253 yvCp~Clsi~C~~~~~C~~C~~~ 275 (298)
-+||.|+...=.. ..|+.||..
T Consensus 31 ~~c~~cGe~~~~H-~vc~~CG~Y 52 (60)
T 3v2d_5 31 VPCPECKAMKPPH-TVCPECGYY 52 (60)
T ss_dssp EECTTTCCEECTT-SCCTTTCEE
T ss_pred eECCCCCCeecce-EEcCCCCcC
Confidence 4588888753322 458888854
No 240
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.40 E-value=33 Score=23.63 Aligned_cols=30 Identities=17% Similarity=0.314 Sum_probs=22.4
Q ss_pred ceeEcCCCCeeec------------CCCCCCccccccccccc
Q 022374 251 MGYICSVCLSIYC------------KHLKKCSTCGSVFGQAQ 280 (298)
Q Consensus 251 ~GyvCp~Clsi~C------------~~~~~C~~C~~~f~~~~ 280 (298)
.-|.|+.|...|- +.|..|+.|+..|...-
T Consensus 16 r~~~C~~C~~~~~~~~L~~H~~~c~~~~~~C~~C~~~~~~~~ 57 (75)
T 2d9k_A 16 RLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKD 57 (75)
T ss_dssp CCEECSSSCCEECHHHHHHHHHHHHHCEEECSSSCCEEETTG
T ss_pred cccCCcccChHhhHHHHHHHHhHcCCCceEcccCCCcCcHHH
Confidence 4689999987764 35678999999876543
No 241
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=20.36 E-value=1.6e+02 Score=22.47 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=25.0
Q ss_pred CCCCCCCCeEEEEEeC----------Ccccccc-CCccHHHHHHHHHHHHH
Q 022374 7 KLYSDDVSLVVVLLDT----------NPFFWSS-SSLSFSQFLTHVLAFLN 46 (298)
Q Consensus 7 ~~~~~~~s~L~iIlD~----------s~~~w~~-~~~~l~~~l~~l~~Fln 46 (298)
+..--+.+.|+|++|. |..+|.. +|.....+=..+..|+.
T Consensus 67 S~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~yLlrPIT~kvldAvIraFLr 117 (121)
T 3q7r_A 67 SPKSLEGSFVLVLLDFFDEETSVDLLDRGFWYLIRPITPRILKSAISLFLS 117 (121)
T ss_dssp CCTTCCSCEEEEEESSCCHHHHHHHHHTTCEEEESCCCHHHHHHHHHHHHH
T ss_pred CCCCCCcccEEEEehhhchHHHHHHHhCCceeEeccCcHHHHHHHHHHHHh
Confidence 3444556789999997 5556755 88865543334444554
No 242
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.20 E-value=68 Score=18.54 Aligned_cols=12 Identities=25% Similarity=0.719 Sum_probs=7.3
Q ss_pred eeEcCCCCeeec
Q 022374 252 GYICSVCLSIYC 263 (298)
Q Consensus 252 GyvCp~Clsi~C 263 (298)
.|.|+.|...|-
T Consensus 10 ~~~C~~C~k~f~ 21 (44)
T 2emx_A 10 PFGCSCCEKAFS 21 (44)
T ss_dssp CEECSSSSCEES
T ss_pred CccCCCCCcccC
Confidence 477766665554
No 243
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.14 E-value=33 Score=19.06 Aligned_cols=13 Identities=31% Similarity=0.825 Sum_probs=8.6
Q ss_pred ceeEcCCCCeeec
Q 022374 251 MGYICSVCLSIYC 263 (298)
Q Consensus 251 ~GyvCp~Clsi~C 263 (298)
.-|.|+.|...|-
T Consensus 8 k~~~C~~C~k~f~ 20 (37)
T 2elo_A 8 RSYSCPVCEKSFS 20 (37)
T ss_dssp CCCEETTTTEECS
T ss_pred CCcCCCCCCCccC
Confidence 3588887766554
No 244
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=20.04 E-value=48 Score=19.56 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=6.4
Q ss_pred eeEcCCCCeeec
Q 022374 252 GYICSVCLSIYC 263 (298)
Q Consensus 252 GyvCp~Clsi~C 263 (298)
.|.|+.|...|-
T Consensus 12 ~~~C~~C~k~F~ 23 (46)
T 2emk_A 12 PYECKECGKAFS 23 (46)
T ss_dssp SCBCSSSCCBCS
T ss_pred ceECCCCCchhC
Confidence 366665555443
Done!