BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022375
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 180/296 (60%), Positives = 217/296 (73%), Gaps = 28/296 (9%)
Query: 28 LSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSF 87
LS+NFY+ CP L+T+KSAV SAV+KE RMGASLLRLHFHDCFV GCD S+LLDDTS+F
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 88 TGEKTSGPNINSARGFEVVDDIKSK-------------------------LGGPSWNVKL 122
TGEKT+GPN NS RGFEV+D IKS+ LGG SWNV L
Sbjct: 62 TGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVLL 121
Query: 123 GRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFR 182
GRRDS TASL++ANS +P P LS LI+ F KG + K++V LSGAHTIGQA+C AFR
Sbjct: 122 GRRDSTTASLSSANSD-LPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFR 180
Query: 183 NRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHS 242
RIYNESNI+ ++AK+ + NCP GD NL+P D +PNKFDN YY +L N+KGLLHS
Sbjct: 181 TRIYNESNIDPTYAKSLQANCPSV--GGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHS 238
Query: 243 DQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIRKNCRRPN 298
DQ LFNG STDS V+ Y++N+ TFN+DF AMIKMG++SPLTG+ G+IR NCR+ N
Sbjct: 239 DQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 149/306 (48%), Positives = 192/306 (62%), Gaps = 37/306 (12%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FYS TCP V+S +Q A+ + R+GASL+RLHFHDCFVNGCD SILLDDT S
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVK 121
EK +GPN+NSARGF VVD+IK+ L GGPSW V
Sbjct: 62 IQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVL 121
Query: 122 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAF 181
LGRRDS TA+LA ANS IP P +LSN+ +F A GL+ D+VALSGAHT G+ARC F
Sbjct: 122 LGRRDSLTANLAGANSS-IPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVF 180
Query: 182 RNRIYN-------ESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL 234
NR++N + + S+ + CP+ GS + + LD +P+ FDN Y+ +L
Sbjct: 181 NNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQ-NGSA-STITNLDLSTPDAFDNNYFANLQ 238
Query: 235 NQKGLLHSDQILFN--GGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIRK 292
+ GLL SDQ LF+ G ST ++V+++ASN F FA +MI MG+ISPLTGS GEIR
Sbjct: 239 SNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRL 298
Query: 293 NCRRPN 298
+C++ N
Sbjct: 299 DCKKVN 304
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 256 bits (653), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 142/306 (46%), Positives = 187/306 (61%), Gaps = 39/306 (12%)
Query: 28 LSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSF 87
L+ FY+ TCP V++ VQ A + R+GASL+RLHFHDCFV GCD SILLD++ S
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 88 TGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVKL 122
EK +GPN NSARGF VVD+IK+ L GGPSW V L
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 123 GRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFR 182
GRRD+ TA+ A ANS IP PT LSN+ ++F A GL+ D+VALSGAHT G+A C F
Sbjct: 124 GRRDTLTANQAGANSS-IPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFS 182
Query: 183 NRIYN-------ESNIESSFAKNRRGNCP-RATGSGDNNLAPLDFQSPNKFDNQYYKHLL 234
NR++N + + ++ + CP + GSG N LD +P+ FDN Y+ +L
Sbjct: 183 NRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTN---LDLSTPDAFDNNYFTNLQ 239
Query: 235 NQKGLLHSDQILFN--GGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIRK 292
+ GLL SDQ LF+ G +T ++V+++ASN F FA +MI MG+ISPLTGS GEIR
Sbjct: 240 SNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRL 299
Query: 293 NCRRPN 298
+C++ N
Sbjct: 300 DCKKTN 305
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 242 bits (617), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/308 (44%), Positives = 178/308 (57%), Gaps = 45/308 (14%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QLS + Y+K+CP L+ V+ V A+ E RM ASL+RLHFHDCFVNGCD S+LLD S
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADS 60
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVK 121
EK + PNINSARGFEV+D IK+ + GGP W V
Sbjct: 61 ---EKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVA 117
Query: 122 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAF 181
LGR+D A+ +AN+ +P P L +I +F A L+ D+VALSGAHT GQA+C F
Sbjct: 118 LGRKDGLVANQNSANN--LPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVF 175
Query: 182 RNRIYN-------ESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL 234
NR++N ++ +E+S N + CP G N APLD + + FDN Y+K+LL
Sbjct: 176 SNRLFNFTGAGNPDATLETSLLSNLQTVCP--LGGNSNITAPLDRSTTDTFDNNYFKNLL 233
Query: 235 NQKGLLHSDQILFNG----GSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 290
KGLL SDQILF+ +T LV Y+ + F DF AMI+MG+IS G+ GE+
Sbjct: 234 EGKGLLSSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMGNIS--NGASGEV 291
Query: 291 RKNCRRPN 298
R NCR N
Sbjct: 292 RTNCRVIN 299
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 230 bits (587), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 129/305 (42%), Positives = 181/305 (59%), Gaps = 39/305 (12%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVK 121
F EK + N NSARGF V+D +K+ + GGPSW V
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 122 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 180
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C +
Sbjct: 122 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRS 180
Query: 181 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 233
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 234 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 290
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 291 RKNCR 295
R NCR
Sbjct: 299 RLNCR 303
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 230 bits (586), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 129/305 (42%), Positives = 181/305 (59%), Gaps = 39/305 (12%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVK 121
F EK + N NSARGF V+D +K+ + GGPSW V
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 122 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 180
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 122 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 181 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 233
+R+YN SN + +++ + RG CP + L +D ++P FDN+YY +L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDMDLRTPTIFDNKYYVNL 238
Query: 234 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 290
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 291 RKNCR 295
R NCR
Sbjct: 299 RLNCR 303
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 229 bits (585), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 130/308 (42%), Positives = 181/308 (58%), Gaps = 39/308 (12%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVK 121
F EK + N NSARGF V+D +K+ + GGPSW V
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 122 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 180
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 121 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 181 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 233
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 234 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 290
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 291 RKNCRRPN 298
R NCR N
Sbjct: 298 RLNCRVVN 305
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 229 bits (584), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/305 (42%), Positives = 180/305 (59%), Gaps = 39/305 (12%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVK 121
F EK + N NSARGF V+D +K+ + GGPSW V
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 122 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 180
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 121 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 181 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 233
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 234 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 290
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 291 RKNCR 295
R NCR
Sbjct: 298 RLNCR 302
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 229 bits (584), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/305 (42%), Positives = 180/305 (59%), Gaps = 39/305 (12%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVK 121
F EK + N NSARGF V+D +K+ + GGPSW V
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 122 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 180
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 121 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 181 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 233
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 234 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 290
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 291 RKNCR 295
R NCR
Sbjct: 298 RLNCR 302
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/305 (42%), Positives = 180/305 (59%), Gaps = 39/305 (12%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVK 121
F EK + N NSARGF V+D +K+ + GGPSW V
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 122 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 180
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 122 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 181 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 233
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 234 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 290
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 291 RKNCR 295
R NCR
Sbjct: 299 RLNCR 303
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 229 bits (583), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 129/305 (42%), Positives = 180/305 (59%), Gaps = 39/305 (12%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVK 121
F EK + N NSARGF V+D +K+ + GGPSW V
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 122 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 180
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 122 LGRRDSLQAFLDLANAN-LPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 181 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 233
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 234 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 290
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 291 RKNCR 295
R NCR
Sbjct: 299 RLNCR 303
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 228 bits (581), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 129/305 (42%), Positives = 180/305 (59%), Gaps = 39/305 (12%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVK 121
F EK + N NSARGF V+D +K+ + GGPSW V
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 122 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 180
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 122 LGRRDSLQAFLDLANAN-LPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 181 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 233
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 234 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 290
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 291 RKNCR 295
R NCR
Sbjct: 299 RLNCR 303
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 228 bits (580), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 128/305 (41%), Positives = 180/305 (59%), Gaps = 39/305 (12%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVK 121
F EK + N NSARGF V+D +K+ + GGPSW V
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 122 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 180
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG H+ G+ +C
Sbjct: 121 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRF 179
Query: 181 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 233
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 234 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 290
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 291 RKNCR 295
R NCR
Sbjct: 298 RLNCR 302
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 227 bits (579), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 128/305 (41%), Positives = 179/305 (58%), Gaps = 39/305 (12%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHFHDCFVNGCD SILLD+T+S
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVK 121
F EK + N NSARGF V+D +K+ + GGPSW V
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 122 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 180
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VAL G HT G+ +C
Sbjct: 121 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRF 179
Query: 181 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 233
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 234 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 290
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 291 RKNCR 295
R NCR
Sbjct: 298 RLNCR 302
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 226 bits (577), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 179/303 (59%), Gaps = 39/303 (12%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +TCP L V + A + R+GASL+RLHFHDCFV GCDGS+LL++T +
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVK 121
E+ + PNINS RG +VV+DIK+ + GGP W V
Sbjct: 61 IESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVP 120
Query: 122 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAF 181
LGRRDS TA+ AN +P P L+ L F +GL+ D+V LSG HT G+ARC F
Sbjct: 121 LGRRDSLTANRTLANQN-LPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTF 179
Query: 182 RNRIYNESN-------IESSFAKNRRGNCPR-ATGSGDNNLAPLDFQSPNKFDNQYYKHL 233
NR+YN SN + +++ + R CP+ ATG +NL LD +P++FDN+YY +L
Sbjct: 180 INRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATG---DNLTNLDLSTPDQFDNRYYSNL 236
Query: 234 LNQKGLLHSDQILFN--GGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIR 291
L GLL SDQ LF+ G T +V++++SN TF S+F +MIKMG+I LTG GEIR
Sbjct: 237 LQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIR 296
Query: 292 KNC 294
C
Sbjct: 297 LQC 299
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 226 bits (576), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 128/305 (41%), Positives = 179/305 (58%), Gaps = 39/305 (12%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+LRLHF DCFVNGCD SILLD+T+S
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVK 121
F EK + N NSARGF V+D +K+ + GGPSW V
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 122 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 180
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 122 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 181 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 233
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 234 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 290
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
Query: 291 RKNCR 295
R NCR
Sbjct: 299 RLNCR 303
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 223 bits (569), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 127/305 (41%), Positives = 178/305 (58%), Gaps = 39/305 (12%)
Query: 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSS 86
QL+ FY +CP + N V+ + + + + R+ AS+L LHF DCFVNGCD SILLD+T+S
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 87 FTGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVK 121
F EK + N NSARGF V+D +K+ + GGPSW V
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 122 LGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS-AKDMVALSGAHTIGQARCVA 180
LGRRDS A L AN+ +P P TL L + F+ GL+ + D+VALSG HT G+ +C
Sbjct: 121 LGRRDSLQAFLDLANAN-LPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 181 FRNRIYNESN-------IESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 233
+R+YN SN + +++ + RG CP + L D ++P FDN+YY +L
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP--LNGNLSALVDFDLRTPTIFDNKYYVNL 237
Query: 234 LNQKGLLHSDQILF---NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEI 290
QKGL+ SDQ LF N T LV ++A++++TF + F AM +MG+I+PLTG+ G+I
Sbjct: 238 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 297
Query: 291 RKNCR 295
R NCR
Sbjct: 298 RLNCR 302
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 189 bits (481), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 159/296 (53%), Gaps = 32/296 (10%)
Query: 28 LSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSF 87
LS +FY +TCP+ + V+ VQ AV K+ + A LLRLHFHDCFV GCD S+LLD +++
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 88 TGEKTSGPNIN-SARGFEVVDDIKSKL--------------------------GGPSWNV 120
GE+ + PN+ F+ V+DI+ +L GGP + V
Sbjct: 69 PGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRV 128
Query: 121 KLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVA 180
LGRRDS++ + +P P+S + +L+ GL A D+V +SG HTIG A C +
Sbjct: 129 PLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCSS 188
Query: 181 FRNRIY--NESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG 238
F +R++ + I +F + CP G + LD ++PN FDN+YY L+N++G
Sbjct: 189 FEDRLFPRPDPTISPTFLSRLKRTCP---AKGTDRRTVLDVRTPNVFDNKYYIDLVNREG 245
Query: 239 LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIRKNC 294
L SDQ LF T +V +A + + F F ++ KMG + T GE+R+NC
Sbjct: 246 LFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNC 301
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 182 bits (463), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/303 (38%), Positives = 153/303 (50%), Gaps = 33/303 (10%)
Query: 28 LSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSF 87
L FY+ +CP + V+ AV +A + + L+R+HFHDCFV GCD S+LLD T++
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 88 TGEKTSGPNINSARGFEVVDDIKSKL-------------------------GGPSWNVKL 122
T EK + PN S RGFEV+ KS + G ++ V
Sbjct: 62 TAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPS 121
Query: 123 GRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFR 182
GRRD T SLA+ + IP P + LIN F K L+A +MV LSGAH+IG A C +F
Sbjct: 122 GRRDG-TVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSFT 180
Query: 183 NRIYN-------ESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLN 235
NR+YN + + S+A R CP + LD +P+ DN YY +
Sbjct: 181 NRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQL 240
Query: 236 QKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIRKNCR 295
GLL SDQ L + + V A N + S FA AM+KMG I LTG+ GEIR NC
Sbjct: 241 TLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCS 300
Query: 296 RPN 298
N
Sbjct: 301 VVN 303
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 79/173 (45%), Gaps = 22/173 (12%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPP--PTSTLSNLINRFQAKGLSAKDMVALSGAH 171
GGP +K GR D T G +P P S +L + F GL+ K++VALSGAH
Sbjct: 105 GGPKIPMKYGRVDV-TEPEQCPEEGRLPDAGPPSPAQHLRDVFYRMGLNDKEIVALSGAH 163
Query: 172 TIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYK 231
T+G++R +R E+ + K + P A G L KFDN Y+K
Sbjct: 164 TLGRSRP----DRS-GWGKPETKYTK----DGPGAPGGQSWTAQWL------KFDNSYFK 208
Query: 232 HLLNQKG----LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 280
+ ++ +L +D LF S YA++ + F D+A A K+ ++
Sbjct: 209 DIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAADPEAFFKDYAEAHAKLSNL 261
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 71/172 (41%), Gaps = 40/172 (23%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAHT 172
GGP GR D G +P T +L + F +A GLS +D+VALSG HT
Sbjct: 108 GGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHT 163
Query: 173 IGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKH 232
IG A + R S E + N P FDN Y+
Sbjct: 164 IGAAH----KER----SGFEGPWTSN-----------------------PLIFDNSYFTE 192
Query: 233 LL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 280
LL + GLL SD+ L LV YA++ F +D+A A +K+ ++
Sbjct: 193 LLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSEL 244
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 71/172 (41%), Gaps = 40/172 (23%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAHT 172
GGP GR D G +P T +L + F +A GL+ +D+VALSG HT
Sbjct: 120 GGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHT 175
Query: 173 IGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKH 232
IG A A S E + N P FDN Y+
Sbjct: 176 IGAAHKEA--------SGFEGPWTSN-----------------------PLIFDNSYFTE 204
Query: 233 LL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 280
LL ++GLL SD+ L + LV YA++ F +D+A A K+ ++
Sbjct: 205 LLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 40/172 (23%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAHT 172
GGP GR D G +P T +L + F +A GL+ +D+VALSG HT
Sbjct: 120 GGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHT 175
Query: 173 IGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKH 232
IG A + R S E + N P FDN Y+
Sbjct: 176 IGAAH----KER----SGFEGPWTSN-----------------------PLIFDNSYFTE 204
Query: 233 LL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 280
LL ++GLL SD+ L + LV YA++ F +D+A A K+ ++
Sbjct: 205 LLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 40/172 (23%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAHT 172
GGP GR D G +P T +L + F +A GL+ +D+VALSG HT
Sbjct: 120 GGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHT 175
Query: 173 IGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKH 232
IG A + R S E + N P FDN Y+
Sbjct: 176 IGAAH----KER----SGFEGPWTSN-----------------------PLIFDNSYFTE 204
Query: 233 LL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 280
LL ++GLL SD+ L + LV YA++ F +D+A A K+ ++
Sbjct: 205 LLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 40/172 (23%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAHT 172
GGP GR D G +P T +L + F +A GL+ +D+VALSG HT
Sbjct: 120 GGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHT 175
Query: 173 IGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKH 232
IG A + R S E + N P FDN Y+
Sbjct: 176 IGAAH----KER----SGFEGPWTSN-----------------------PLIFDNSYFTE 204
Query: 233 LL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 280
LL ++GLL SD+ L + LV YA++ F +D+A A K+ ++
Sbjct: 205 LLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 40/172 (23%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAHT 172
GGP GR D G +P T +L + F +A GL+ +D+VALSG HT
Sbjct: 108 GGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHT 163
Query: 173 IGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKH 232
IG A + R S E + N P FDN Y+
Sbjct: 164 IGAAH----KER----SGFEGPWTSN-----------------------PLIFDNSYFTE 192
Query: 233 LL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 280
LL ++GLL SD+ L + LV YA++ F +D+A A K+ ++
Sbjct: 193 LLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 40/172 (23%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAHT 172
GGP GR D G +P T +L + F +A GL+ +D+VALSG HT
Sbjct: 120 GGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHT 175
Query: 173 IGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKH 232
IG A + R S E + N P FDN Y+
Sbjct: 176 IGAAH----KER----SGFEGPWTSN-----------------------PLIFDNSYFTE 204
Query: 233 LL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 280
LL ++GLL SD+ L + LV YA++ F +D+A A K+ ++
Sbjct: 205 LLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 40/172 (23%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAHT 172
GGP GR D G +P T +L + F +A GL+ +D+VALSG HT
Sbjct: 120 GGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHT 175
Query: 173 IGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKH 232
IG A + R S E + N P FDN Y+
Sbjct: 176 IGAAH----KER----SGFEGPWTSN-----------------------PLIFDNSYFTE 204
Query: 233 LL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 280
LL ++GLL SD+ L + LV YA++ F +D+A A K+ ++
Sbjct: 205 LLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 114/291 (39%), Gaps = 78/291 (26%)
Query: 34 SKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFH-----DCFVNGCDGS-----ILLDD 83
S+ P + +++ ++ +S++ +G SL+RL +H DCF DGS +
Sbjct: 1 SEEPPFDIRALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKK--DGSPNSASMRFKP 58
Query: 84 TSSFTGEK-------------TSGPNINSARGFEVVDDIKSK-LGGPSWNVKLGRRDSKT 129
+ G K P I+ A + + + + +GGP+ GR D+K
Sbjct: 59 ECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKD 118
Query: 130 ASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNES 189
S+ + G +P + T S++ F+ G + ++ VAL GAHT G+ + F S
Sbjct: 119 GSVCGPD-GRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECH-IEF-------S 169
Query: 190 NIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLH-------- 241
+ ++ G FDN ++ LL++ +L+
Sbjct: 170 GYHGPWTHDKNG-----------------------FDNSFFTQLLDEDWVLNPKVEQMQL 206
Query: 242 ------------SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 280
SD L S V YA ++ FN DFA A K+ ++
Sbjct: 207 MDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 257
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 40/172 (23%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAHT 172
GGP GR D G +P T +L + F +A GL+ +D+VALSG HT
Sbjct: 120 GGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHT 175
Query: 173 IGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKH 232
IG A + R S E + N P FDN Y+
Sbjct: 176 IGAAH----KER----SGFEGPWTSN-----------------------PLIFDNSYFTE 204
Query: 233 LL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 280
LL ++GLL SD+ L + LV YA++ F +D+A A K+ ++
Sbjct: 205 LLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 256
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 40/172 (23%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAHT 172
GGP GR D G +P T +L + F +A GL+ +D+VALSG HT
Sbjct: 108 GGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHT 163
Query: 173 IGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKH 232
IG A + R S E + N P FDN Y+
Sbjct: 164 IGAAH----KER----SGFEGPWTSN-----------------------PLIFDNSYFTE 192
Query: 233 LL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 280
LL ++GLL SD+ L + LV YA++ F +D+A A K+ ++
Sbjct: 193 LLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 40/172 (23%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAHT 172
GGP GR D G +P T +L + F +A GL+ +D+VALSG HT
Sbjct: 108 GGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHT 163
Query: 173 IGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKH 232
IG A + R S E + N P FDN Y+
Sbjct: 164 IGAAH----KER----SGFEGPWTSN-----------------------PLIFDNSYFTE 192
Query: 233 LL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 280
LL ++GLL SD+ L + LV YA++ F +D+A A K+ ++
Sbjct: 193 LLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 72/172 (41%), Gaps = 40/172 (23%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRF-QAKGLSAKDMVALSGAHT 172
GGP GR D G +P T +L + F +A GL+ +D+VALSG HT
Sbjct: 108 GGPEVPFHPGREDKPEPP----PEGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHT 163
Query: 173 IGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKH 232
IG A + R S E + N P FDN Y+
Sbjct: 164 IGAAH----KER----SGFEGPWTSN-----------------------PLIFDNSYFTE 192
Query: 233 LL--NQKGLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 280
LL ++GLL SD+ L + LV YA++ F +D+A A K+ ++
Sbjct: 193 LLSGEKEGLLQLPSDKALLSDPVFRPLVDKYAADEDAFFADYAEAHQKLSEL 244
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 114/291 (39%), Gaps = 78/291 (26%)
Query: 34 SKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFH-----DCFVNGCDGS-----ILLDD 83
S+ P + +++ ++ +S++ +G SL+RL +H DCF DGS +
Sbjct: 2 SEEPPFDIRALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKK--DGSPNSASMRFKP 59
Query: 84 TSSFTGEK-------------TSGPNINSARGFEVVDDIKSK-LGGPSWNVKLGRRDSKT 129
+ G K P I+ A + + + + +GGP+ GR D+K
Sbjct: 60 ECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKD 119
Query: 130 ASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNES 189
S+ + G +P + T S++ F+ G + ++ VAL GAHT G+ + F S
Sbjct: 120 GSVCGPD-GRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECH-IEF-------S 170
Query: 190 NIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLH-------- 241
+ ++ G FDN ++ LL++ +L+
Sbjct: 171 GYHGPWTHDKNG-----------------------FDNSFFTQLLDEDWVLNPKVEQMQL 207
Query: 242 ------------SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 280
SD L S V YA ++ FN DFA A K+ ++
Sbjct: 208 MDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 258
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 114/291 (39%), Gaps = 78/291 (26%)
Query: 34 SKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFH-----DCFVNGCDGS-----ILLDD 83
S+ P + +++ ++ +S++ +G SL+RL +H DCF DGS +
Sbjct: 2 SEEPPFDIRALRADIEDMISEKLELGPSLIRLAWHEAASYDCFKK--DGSPNSASMRFKP 59
Query: 84 TSSFTGEK-------------TSGPNINSARGFEVVDDIKSK-LGGPSWNVKLGRRDSKT 129
+ G K P I+ A + + + + +GGP+ GR D+K
Sbjct: 60 ECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKD 119
Query: 130 ASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNES 189
S+ + G +P + T S++ F+ G + ++ VAL GAHT G+ + F S
Sbjct: 120 GSVCGPD-GRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETH-IEF-------S 170
Query: 190 NIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLH-------- 241
+ ++ G FDN ++ LL++ +L+
Sbjct: 171 GYHGPWTHDKNG-----------------------FDNSFFTQLLDEDWVLNPKVEQMQL 207
Query: 242 ------------SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDI 280
SD L S V YA ++ FN DFA A K+ ++
Sbjct: 208 MDRATTKLMMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTEL 258
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 67/186 (36%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
HT+G+ S E + N PN FDN +Y
Sbjct: 175 HTLGKTHL--------KNSGYEGPWTAN-----------------------PNVFDNSFY 203
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 66/186 (35%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VALSGA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALSGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
HT+G+ S E + N N FDN +Y
Sbjct: 175 HTLGKTHL--------KNSGYEGPWTANN-----------------------NVFDNSFY 203
Query: 231 KHLLNQKGLLH-------------------SDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|1R1N|A Chain A, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1R1N|B Chain B, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1R1N|C Chain C, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1R1N|D Chain D, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1R1N|E Chain E, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1R1N|F Chain F, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1R1N|G Chain G, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1R1N|H Chain H, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1R1N|I Chain I, Tri-Nuclear Oxo-Iron Clusters In The Ferric Binding
Protein From N. Gonorrhoeae
pdb|1XC1|A Chain A, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|1XC1|B Chain B, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|1XC1|C Chain C, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|1XC1|D Chain D, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|1XC1|E Chain E, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|1XC1|F Chain F, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|1XC1|G Chain G, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|1XC1|H Chain H, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|1XC1|I Chain I, Oxo Zirconium(Iv) Cluster In The Ferric Binding Protein
(Fbp)
pdb|3TYH|A Chain A, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
pdb|3TYH|B Chain B, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
pdb|3TYH|C Chain C, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
pdb|3TYH|D Chain D, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
pdb|3TYH|E Chain E, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
pdb|3TYH|F Chain F, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
pdb|3TYH|G Chain G, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
pdb|3TYH|H Chain H, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
pdb|3TYH|I Chain I, Crystal Structure Of Oxo-Cupper Clusters Binding To Ferric
Binding Protein From Neisseria Gonorrhoeae
Length = 309
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 20/118 (16%)
Query: 97 INSARGFEVVDDIKSKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQA 156
+NSA+G ++ IK + +V + A+L+AAN + P P ST IN +
Sbjct: 30 LNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANL-LEPLPAST----INETRG 84
Query: 157 KGL---SAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSF-------AKNRRGNCP 204
KG+ + KD VALS G++R V + R +E ++E S KNR G P
Sbjct: 85 KGVPVAAKKDWVALS-----GRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVP 137
>pdb|1O7T|A Chain A, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae.
pdb|1O7T|B Chain B, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae.
pdb|1O7T|C Chain C, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae.
pdb|1O7T|D Chain D, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae.
pdb|1O7T|E Chain E, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae.
pdb|1O7T|F Chain F, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae.
pdb|1O7T|G Chain G, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae.
pdb|1O7T|H Chain H, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae.
pdb|1O7T|I Chain I, Metal Nanoclusters Bound To The Ferric Binding Protein
From Neisseria Gonorrhoeae
Length = 309
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 20/118 (16%)
Query: 97 INSARGFEVVDDIKSKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQA 156
+NSA+G ++ IK + +V + A+L+AAN + P P ST IN +
Sbjct: 30 LNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANL-LEPLPAST----INETRG 84
Query: 157 KGL---SAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSF-------AKNRRGNCP 204
KG+ + KD VALS G++R V + R +E ++E S KNR G P
Sbjct: 85 KGVPVAAKKDWVALS-----GRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVP 137
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 66/186 (35%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
HT+G+ S E + N N FDN +Y
Sbjct: 175 HTLGKTHL--------KNSGYEGPWTANN-----------------------NVFDNSFY 203
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 68/186 (36%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
HT+G+ +N Y P D + N FDN +Y
Sbjct: 175 HTLGKTHL---KNSGYE---------------------------GPWD-ATNNVFDNSFY 203
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
HT+G+ S E + N N FDN +Y
Sbjct: 175 HTLGKTHL--------KNSGYEGPWTANN-----------------------NVFDNSFY 203
Query: 231 KHLLNQKGLLH-------------------SDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNEDWKLEKNDANNEQWDSKSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 64/181 (35%), Gaps = 42/181 (23%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 114 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HTIGQARCV-------------AFRNRIY-NESNIESSFAKNRRGNCPRATGSGDNNLAP 216
H +G+ F N Y N N + KN N + SG
Sbjct: 172 HALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG------ 225
Query: 217 LDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIK 276
Y HL L+ + L S+V YA++ F DF+ A K
Sbjct: 226 -------------YMHLPTDYSLIQDPKYL-------SIVKEYANDQDKFFKDFSKAFEK 265
Query: 277 M 277
+
Sbjct: 266 L 266
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 35.0 bits (79), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 54/186 (29%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 120 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 177
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ +N Y G G NN+ F N++Y
Sbjct: 178 HALGKTHL---KNSGYE--------------------GGGANNV----------FTNEFY 204
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 205 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 264
Query: 272 AAMIKM 277
A K+
Sbjct: 265 KAFEKL 270
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 54/186 (29%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 115 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 172
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ +N Y G G NN+ F N++Y
Sbjct: 173 HALGKTHL---KNSGYE--------------------GGGANNV----------FTNEFY 199
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 200 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 259
Query: 272 AAMIKM 277
A K+
Sbjct: 260 KAFEKL 265
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 34.7 bits (78), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 68/186 (36%), Gaps = 54/186 (29%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 114 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ +N Y G G NN+ F N++Y
Sbjct: 172 HALGKTHL---KNSGYE--------------------GGGANNV----------FTNEFY 198
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 199 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 258
Query: 272 AAMIKM 277
A K+
Sbjct: 259 KAFEKL 264
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 114 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N+YY
Sbjct: 172 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEYY 200
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 201 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 272 AAMIKM 277
A K+
Sbjct: 261 KAFEKL 266
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 119 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P+ + N F N++Y
Sbjct: 177 HALGKTHL------------------KNSGYEGPQGAAN-------------NVFTNEFY 205
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 206 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 272 AAMIKM 277
A K+
Sbjct: 266 KAFEKL 271
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 66/186 (35%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 114 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P+ + N F N++Y
Sbjct: 172 HALGKTHL------------------KNSGYEGPQGAAN-------------NVFTNEFY 200
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 201 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 272 AAMIKM 277
A K+
Sbjct: 261 KAFEKL 266
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 115 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 172
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ +N Y G NN+ F N++Y
Sbjct: 173 HALGKTHL---KNSGY------------------EGPGGAANNV----------FTNEFY 201
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 202 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 261
Query: 272 AAMIKM 277
A K+
Sbjct: 262 KAFEKL 267
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 119 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ +N Y G NN+ F N++Y
Sbjct: 177 HALGKTHL---KNSGY------------------EGPGGAANNV----------FTNEFY 205
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 206 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 272 AAMIKM 277
A K+
Sbjct: 266 KAFEKL 271
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ +N Y G NN+ F N++Y
Sbjct: 175 HALGKTHL---KNSGY------------------EGPGGAANNV----------FTNEFY 203
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 114 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ +N Y G NN+ F N++Y
Sbjct: 172 HALGKTHL---KNSGY------------------EGPGGAANNV----------FTNEFY 200
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 201 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 272 AAMIKM 277
A K+
Sbjct: 261 KAFEKL 266
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ +N Y G NN+ F N++Y
Sbjct: 175 HALGKTHL---KNSGY------------------EGPGGAANNV----------FTNEFY 203
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 114 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALKGA 171
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 172 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 200
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 201 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 272 AAMIKM 277
A K+
Sbjct: 261 KAFEKL 266
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 110 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 167
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ S E F + N F N++Y
Sbjct: 168 HALGKTHL--------KRSGYEGPFG-----------------------AANNVFTNEFY 196
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 197 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 256
Query: 272 AAMIKM 277
A K+
Sbjct: 257 KAFEKL 262
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 175 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 203
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 116 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 173
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 174 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 202
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 203 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 262
Query: 272 AAMIKM 277
A K+
Sbjct: 263 KAFEKL 268
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 175 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 203
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 175 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 203
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 119 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 177 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 205
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 206 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 272 AAMIKM 277
A K+
Sbjct: 266 KAFEKL 271
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 175 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 203
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 114 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 172 HALGKTEL------------------KNSGYEGPWGAAN-------------NVFTNEFY 200
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 201 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 272 AAMIKM 277
A K+
Sbjct: 261 KAFEKL 266
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 116 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 173
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ S E F + N F N++Y
Sbjct: 174 HALGKTHL--------KRSGYEGPFG-----------------------AANNVFTNEFY 202
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 203 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDRFFKDFS 262
Query: 272 AAMIKM 277
A K+
Sbjct: 263 KAFEKL 268
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 119 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 177 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 205
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 206 LNLLNEDWKLEKNDANNEQWDSKSGYIMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 272 AAMIKM 277
A K+
Sbjct: 266 KAFEKL 271
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 175 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 203
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 119 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 177 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 205
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 206 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 272 AAMIKM 277
A K+
Sbjct: 266 KAFEKL 271
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 119 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 177 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 205
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 206 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 272 AAMIKM 277
A K+
Sbjct: 266 KAFEKL 271
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 119 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 177 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 205
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 206 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 272 AAMIKM 277
A K+
Sbjct: 266 KAFEKL 271
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 175 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 203
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 119 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 177 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 205
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 206 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 272 AAMIKM 277
A K+
Sbjct: 266 KAFEKL 271
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 119 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 177 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 205
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 206 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 272 AAMIKM 277
A K+
Sbjct: 266 KAFEKL 271
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 114 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 172 HALGKTHL------------------KNSGYEGPYGAAN-------------NVFTNEFY 200
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 201 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 272 AAMIKM 277
A K+
Sbjct: 261 KAFEKL 266
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 120 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 177
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 178 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 206
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 207 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 266
Query: 272 AAMIKM 277
A K+
Sbjct: 267 KAFEKL 272
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 114 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 172 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 200
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 201 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 272 AAMIKM 277
A K+
Sbjct: 261 KAFEKL 266
>pdb|2VKA|A Chain A, Site-directed Mutagenesis Of The Catalytic Tryptophan
Environment In Pleurotus Eryngii Versatile Peroxidase
Length = 317
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 93/252 (36%), Gaps = 65/252 (25%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDT--SSFTGEKTSGPNINSARGFEVVDDIKSK- 112
LRL FHD G DGSI+ DT ++F +++ + F +I +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 113 -------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGL 159
GG LGR D+ +AA+ ++P P ++ +++ R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDSILARMGDAGF 157
Query: 160 SAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSFAKNRRGNCPR 205
S ++V L +H+I A V F ++ + E+ ++
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFP-------- 209
Query: 206 ATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKT 265
G+ DN + QSP L + L SD +L T ++ +N
Sbjct: 210 --GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACEWQSFVNNQPK 253
Query: 266 FNSDFAAAMIKM 277
+ FAA M KM
Sbjct: 254 IQNRFAATMSKM 265
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 175 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 203
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 119 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ +R G+ + N F N++Y
Sbjct: 177 HALGKTHL--------------------KRSGYEGPWGAAN-----------NVFTNEFY 205
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 206 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 272 AAMIKM 277
A K+
Sbjct: 266 KAFEKL 271
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 114 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 172 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 200
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 201 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 272 AAMIKM 277
A K+
Sbjct: 261 KAFEKL 266
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 114 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ +R G+ + N F N++Y
Sbjct: 172 HALGKTHL--------------------KRSGYEGPWGAAN-----------NVFTNEFY 200
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 201 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 272 AAMIKM 277
A K+
Sbjct: 261 KAFEKL 266
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 114 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 172 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 200
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 201 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 272 AAMIKM 277
A K+
Sbjct: 261 KAFEKL 266
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 119 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ +R G+ + N F N++Y
Sbjct: 177 HALGKTHL--------------------KRSGYEGPWGAAN-----------NVFTNEFY 205
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 206 LNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 272 AAMIKM 277
A K+
Sbjct: 266 KAFEKL 271
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 66/186 (35%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ +R G+ + N F N++Y
Sbjct: 175 HALGKTHL--------------------KRSGYEGPWGAAN-----------NVFTNEFY 203
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNENWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|1MN1|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant D179n
Length = 357
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQ-AKGLSAKDMVALSGAHT 172
G P GR + A++ G+IP P +++ ++ RF+ A G + ++V+L +H+
Sbjct: 119 GAPRLEFLAGRPNKTIAAV----DGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHS 174
Query: 173 IGQA 176
+ +A
Sbjct: 175 VARA 178
>pdb|1YYD|A Chain A, High Resolution Crystal Structure Of Manganese Peroxidase
pdb|1YYG|A Chain A, Manganese Peroxidase Complexed With Cd(Ii) Inhibitor
pdb|1YZP|A Chain A, Substrate-free Manganese Peroxidase
pdb|1YZR|A Chain A, Manganese Peroxidase-Sm(Iii) Complex
pdb|1MNP|A Chain A, Manganese Peroxidase
pdb|3M5Q|A Chain A, 0.93 A Structure Of Manganese-Bound Manganese Peroxidase
pdb|3M8M|A Chain A, 1.05 A Structure Of Manganese-Free Manganese Peroxidase
Length = 357
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQ-AKGLSAKDMVALSGAHT 172
G P GR + A++ G+IP P +++ ++ RF+ A G + ++V+L +H+
Sbjct: 119 GAPRLEFLAGRPNKTIAAV----DGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHS 174
Query: 173 IGQA 176
+ +A
Sbjct: 175 VARA 178
>pdb|1MN2|A Chain A, Manganese Peroxidase Substrate Binding Site Mutant E35q,
D179n
Length = 357
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQ-AKGLSAKDMVALSGAHT 172
G P GR + A++ G+IP P +++ ++ RF+ A G + ++V+L +H+
Sbjct: 119 GAPRLEFLAGRPNKTIAAV----DGLIPEPQDSVTKILQRFEDAGGFTPFEVVSLLASHS 174
Query: 173 IGQA 176
+ +A
Sbjct: 175 VARA 178
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRAGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 175 HALGKTHL------------------KNSGYEGPWGAAN-------------NCFTNEFY 203
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 119 QEMQGPKIPWRAGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 177 HALGKTHL------------------KNSGYEGPWGCAN-------------NVFTNEFY 205
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 206 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 272 AAMIKM 277
A K+
Sbjct: 266 KAFEKL 271
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 32.3 bits (72), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 119 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ S E F + N F N++Y
Sbjct: 177 HALGKTHL--------KNSGYEGPFG-----------------------AANNVFTNEFY 205
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 206 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 265
Query: 272 AAMIKM 277
A K+
Sbjct: 266 KAFEKL 271
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 65/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDMDKDAGYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N++Y
Sbjct: 175 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEFY 203
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 64/181 (35%), Gaps = 42/181 (23%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 120 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 177
Query: 171 HTIGQARCV-------------AFRNRIY-NESNIESSFAKNRRGNCPRATGSGDNNLAP 216
H +G+ F N Y N N + KN N + SG
Sbjct: 178 HALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG------ 231
Query: 217 LDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIK 276
Y L + L+ + L S+V YA++ F DF+ A K
Sbjct: 232 -------------YMMLPTEYSLIQDPKYL-------SIVKEYANDQDKFFKDFSKAFEK 271
Query: 277 M 277
+
Sbjct: 272 L 272
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/182 (21%), Positives = 63/182 (34%), Gaps = 52/182 (28%)
Query: 115 GPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIG 174
GP + GR D T ++G +P + FQ ++ +++VAL GAH +G
Sbjct: 123 GPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALG 180
Query: 175 QARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL 234
+ KN P + N F N++Y +LL
Sbjct: 181 KTHL------------------KNSGYEGPWGAAN-------------NVFTNEFYLNLL 209
Query: 235 NQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMI 275
N+ +L +D L S+V YA++ F DF+ A
Sbjct: 210 NEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFSKAFE 269
Query: 276 KM 277
K+
Sbjct: 270 KL 271
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 93/252 (36%), Gaps = 65/252 (25%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDT--SSFTGEKTSGPNINSARGFEVVDDIKSK- 112
LRL FHD G DGSI+ DT ++F +++ + F +I +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 113 -------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGL 159
GG LGR D+ +AA+ ++P P ++ +++ R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDSILARMGDAGF 157
Query: 160 SAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSFAKNRRGNCPR 205
S ++V+L +H+I A V F ++ + E+ ++
Sbjct: 158 SPVEVVSLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFP-------- 209
Query: 206 ATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKT 265
G+ DN + QSP L + L SD +L T + +N
Sbjct: 210 --GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACEWQSMVNNQPK 253
Query: 266 FNSDFAAAMIKM 277
+ FAA M KM
Sbjct: 254 IQNRFAATMSKM 265
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 50/159 (31%)
Query: 139 VIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKN 198
+IP P +T++ +++RF G S ++V L AH++ ++ + S+ ++
Sbjct: 151 LIPGPGNTVTAILDRFGDAGFSPDEVVDLLAAHSLA------------SQEGLNSAIFRS 198
Query: 199 RRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL----NQKGL--------------- 239
PLD +P FD Q+Y L Q G
Sbjct: 199 -----------------PLD-STPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGGF 240
Query: 240 -LHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 277
+ SD +L T + S+++ F AAM KM
Sbjct: 241 RIRSDALLARDSRTACRWQSMTSSNEVMGQRFRAAMAKM 279
>pdb|3FM6|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 92/252 (36%), Gaps = 65/252 (25%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDT--SSFTGEKTSGPNINSARGFEVVDDIKSK- 112
LRL FHD G DGSI+ DT ++F +++ + F +I +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 113 -------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGL 159
GG LGR D+ +AA+ ++P P ++ +++ R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPQDSVDSILARMGDAGF 157
Query: 160 SAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSFAKNRRGNCPR 205
S ++V L +H+I A V F ++ + E+ ++
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFP-------- 209
Query: 206 ATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKT 265
G+ DN + QSP L + L SD +L T + +N
Sbjct: 210 --GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACEWQSMVNNQPK 253
Query: 266 FNSDFAAAMIKM 277
+ FAA M KM
Sbjct: 254 IQNRFAATMSKM 265
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 63/181 (34%), Gaps = 42/181 (23%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCV-------------AFRNRIY-NESNIESSFAKNRRGNCPRATGSGDNNLAP 216
H +G+ F N Y N N + KN N + SG
Sbjct: 175 HALGKTHLKRSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG------ 228
Query: 217 LDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIK 276
Y L L+ + L S+V YA++ F DF+ A K
Sbjct: 229 -------------YMMLPTXYSLIQDPKYL-------SIVKEYANDQDKFFKDFSKAFEK 268
Query: 277 M 277
+
Sbjct: 269 L 269
>pdb|4FCS|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 92/252 (36%), Gaps = 65/252 (25%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDT--SSFTGEKTSGPNINSARGFEVVDDIKSK- 112
LRL FHD G DGSI+ DT ++F +++ + F +I +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 113 -------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGL 159
GG LGR D+ +AA+ ++P P ++ +++ R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDSILARMGDAGF 157
Query: 160 SAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSFAKNRRGNCPR 205
S ++V L +H+I A V F ++ + E+ ++
Sbjct: 158 SPVEVVWLLASHSIAAADGVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFP-------- 209
Query: 206 ATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKT 265
G+ DN + QSP L + L SD +L T + +N
Sbjct: 210 --GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACEWQSMVNNQPK 253
Query: 266 FNSDFAAAMIKM 277
+ FAA M KM
Sbjct: 254 IQNRFAATMSKM 265
>pdb|2W23|A Chain A, Structure Of Mutant W169y Of Pleurotus Eryngii Versatile
Peroxidase (Vp)
Length = 316
Score = 31.2 bits (69), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 92/252 (36%), Gaps = 65/252 (25%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDT--SSFTGEKTSGPNINSARGFEVVDDIKSK- 112
LRL FHD G DGSI+ DT ++F +++ + F +I +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 113 -------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGL 159
GG LGR D+ +AA+ ++P P ++ +++ R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDSILARMGDAGF 157
Query: 160 SAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSFAKNRRGNCPR 205
S ++V L +H+I A V F ++ + E+ ++
Sbjct: 158 SPVEVVYLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFP-------- 209
Query: 206 ATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKT 265
G+ DN + QSP L + L SD +L T + +N
Sbjct: 210 --GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACEWQSMVNNQPK 253
Query: 266 FNSDFAAAMIKM 277
+ FAA M KM
Sbjct: 254 IQNRFAATMSKM 265
>pdb|3FM1|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 92/252 (36%), Gaps = 65/252 (25%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDT--SSFTGEKTSGPNINSARGFEVVDDIKSK- 112
LRL FHD G DGSI+ DT ++F +++ + F +I +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 113 -------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGL 159
GG LGR D+ +AA+ ++P P ++ +++ R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDSILARMGDAGF 157
Query: 160 SAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSFAKNRRGNCPR 205
S ++V L +H+I A V F ++ + E+ ++
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPQVFDSQFFIETQLKGRLFP-------- 209
Query: 206 ATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKT 265
G+ DN + QSP L + L SD +L T + +N
Sbjct: 210 --GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACEWQSMVNNQPK 253
Query: 266 FNSDFAAAMIKM 277
+ FAA M KM
Sbjct: 254 IQNRFAATMSKM 265
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 63/181 (34%), Gaps = 42/181 (23%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCV-------------AFRNRIY-NESNIESSFAKNRRGNCPRATGSGDNNLAP 216
H +G+ F N Y N N + KN N + SG
Sbjct: 175 HALGKTHLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG------ 228
Query: 217 LDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIK 276
Y L L+ + L S+V YA++ F DF+ A K
Sbjct: 229 -------------YMMLPTNYSLIQDPKYL-------SIVKEYANDQDKFFKDFSKAFEK 268
Query: 277 M 277
+
Sbjct: 269 L 269
>pdb|2BOQ|A Chain A, Crystal Structure Of Versatile Peroxidase
Length = 331
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 92/252 (36%), Gaps = 65/252 (25%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDT--SSFTGEKTSGPNINSARGFEVVDDIKSK- 112
LRL FHD G DGSI+ DT ++F +++ + F +I +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 113 -------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGL 159
GG LGR D+ +AA+ ++P P ++ +++ R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDSILARMGDAGF 157
Query: 160 SAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSFAKNRRGNCPR 205
S ++V L +H+I A V F ++ + E+ ++
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFP-------- 209
Query: 206 ATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKT 265
G+ DN + QSP L + L SD +L T + +N
Sbjct: 210 --GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACEWQSMVNNQPK 253
Query: 266 FNSDFAAAMIKM 277
+ FAA M KM
Sbjct: 254 IQNRFAATMSKM 265
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 63/181 (34%), Gaps = 42/181 (23%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 119 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 176
Query: 171 HTIGQARCV-------------AFRNRIY-NESNIESSFAKNRRGNCPRATGSGDNNLAP 216
H +G+ F N Y N N + KN N + SG
Sbjct: 177 HALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG------ 230
Query: 217 LDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIK 276
Y L L+ + L S+V YA++ F DF+ A K
Sbjct: 231 -------------YMMLPTNYSLIQDPKYL-------SIVKEYANDQDKFFKDFSKAFEK 270
Query: 277 M 277
+
Sbjct: 271 L 271
>pdb|3FM4|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 92/252 (36%), Gaps = 65/252 (25%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDT--SSFTGEKTSGPNINSARGFEVVDDIKSK- 112
LRL FHD G DGSI+ DT ++F +++ + F +I +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 113 -------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGL 159
GG LGR D+ +AA+ ++P P ++ +++ R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDSILARMGDAGF 157
Query: 160 SAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSFAKNRRGNCPR 205
S ++V L +H+I A V F ++ + E+ ++
Sbjct: 158 SPVEVVWLLASHSIAAAAKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFP-------- 209
Query: 206 ATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKT 265
G+ DN + QSP L + L SD +L T + +N
Sbjct: 210 --GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACEWQSMVNNQPK 253
Query: 266 FNSDFAAAMIKM 277
+ FAA M KM
Sbjct: 254 IQNRFAATMSKM 265
>pdb|3FJW|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
pdb|3FJW|B Chain B, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 92/252 (36%), Gaps = 65/252 (25%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDT--SSFTGEKTSGPNINSARGFEVVDDIKSK- 112
LRL FHD G DGSI+ DT ++F +++ + F +I +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 113 -------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGL 159
GG LGR D+ +AA+ ++P P ++ +++ R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDSILARMGDAGF 157
Query: 160 SAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSFAKNRRGNCPR 205
S ++V L +H+I A V F ++ + E+ ++
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPGVFDSQFFIETQLKGRLFP-------- 209
Query: 206 ATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKT 265
G+ DN + QSP L + L SD +L T + +N
Sbjct: 210 --GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACEWQSMVNNQPK 253
Query: 266 FNSDFAAAMIKM 277
+ FAA M KM
Sbjct: 254 IQNRFAATMSKM 265
>pdb|3FKG|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 92/252 (36%), Gaps = 65/252 (25%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDT--SSFTGEKTSGPNINSARGFEVVDDIKSK- 112
LRL FHD G DGSI+ DT ++F +++ + F +I +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 113 -------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGL 159
GG LGR D+ +AA+ ++P P ++ +++ R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPEPFDSVDSILARMGDAGF 157
Query: 160 SAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSFAKNRRGNCPR 205
S ++V L +H+I A V F ++ + E+ ++
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFP-------- 209
Query: 206 ATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKT 265
G+ DN + QSP L + L SD +L T + +N
Sbjct: 210 --GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACEWQSMVNNQPK 253
Query: 266 FNSDFAAAMIKM 277
+ FAA M KM
Sbjct: 254 IQNRFAATMSKM 265
>pdb|1Q9J|A Chain A, Structure Of Polyketide Synthase Associated Protein 5 From
Mycobacterium Tuberculosis
pdb|1Q9J|B Chain B, Structure Of Polyketide Synthase Associated Protein 5 From
Mycobacterium Tuberculosis
Length = 422
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 57 RMGASLLRLHFHDCFVNGCDGSILLDDT-SSFTGEKTSG 94
R G + L L+ H C +G G++L+D+ S +T T+G
Sbjct: 112 REGGAELTLYLHHCMADGHHGAVLVDELFSRYTDAVTTG 150
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 63/181 (34%), Gaps = 42/181 (23%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 120 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 177
Query: 171 HTIGQARCV-------------AFRNRIY-NESNIESSFAKNRRGNCPRATGSGDNNLAP 216
H +G+ F N Y N N + KN N + SG
Sbjct: 178 HALGKTHLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDANNEQWDSKSG------ 231
Query: 217 LDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIK 276
Y L L+ + L S+V YA++ F DF+ A K
Sbjct: 232 -------------YMMLPTAYSLIQDPKYL-------SIVKEYANDQDKFFKDFSKAFEK 271
Query: 277 M 277
+
Sbjct: 272 L 272
>pdb|4FCN|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 319
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 92/252 (36%), Gaps = 65/252 (25%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDT--SSFTGEKTSGPNINSARGFEVVDDIKSK- 112
LRL FHD G DGSI+ DT ++F +++ + F +I +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 113 -------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGL 159
GG LGR D+ +AA+ ++P P ++ +++ R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPGPFDSVDSILARMGDAGF 157
Query: 160 SAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSFAKNRRGNCPR 205
S ++V L +H+I A V F ++ + E+ ++
Sbjct: 158 SPVEVVWLLASHSIAAADGVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFP-------- 209
Query: 206 ATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKT 265
G+ DN + QSP L + L SD +L T + +N
Sbjct: 210 --GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACEWQSMVNNQPK 253
Query: 266 FNSDFAAAMIKM 277
+ FAA M KM
Sbjct: 254 IQNRFAATMSKM 265
>pdb|4FDQ|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 315
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 92/252 (36%), Gaps = 65/252 (25%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDT--SSFTGEKTSGPNINSARGFEVVDDIKSK- 112
LRL FHD G DGSI+ DT ++F +++ + F +I +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 113 -------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGL 159
GG LGR D+ +AA+ ++P P ++ +++ R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPGPFDSVDSILARMGDAGF 157
Query: 160 SAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSFAKNRRGNCPR 205
S ++V L +H+I A V F ++ + E+ ++
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFP-------- 209
Query: 206 ATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKT 265
G+ DN + QSP L + L SD +L T + +N
Sbjct: 210 --GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACEWQSMVNNQPK 253
Query: 266 FNSDFAAAMIKM 277
+ FAA M KM
Sbjct: 254 IQNRFAATMSKM 265
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 114 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 171
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N+ Y
Sbjct: 172 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEKY 200
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 201 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 260
Query: 272 AAMIKM 277
A K+
Sbjct: 261 KAFEKL 266
>pdb|4G05|A Chain A, The Crystal Structures Of Several Mutants Of Pleurotus
Eryngii Versatile Peroxidase
Length = 317
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 92/252 (36%), Gaps = 65/252 (25%)
Query: 63 LRLHFHDCFV-------NGCDGSILLDDT--SSFTGEKTSGPNINSARGFEVVDDIKSK- 112
LRL FHD G DGSI+ DT ++F +++ + F +I +
Sbjct: 42 LRLTFHDAIGFSPTLGGGGADGSIIAFDTIETNFPANAGIDEIVSAQKPFVAKHNISAGD 101
Query: 113 -------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGL 159
GG LGR D+ +AA+ ++P P ++ +++ R G
Sbjct: 102 FIQFAGAVGVSNCPGGVRIPFFLGRPDA----VAASPDHLVPGPFDSVDSILARMGDAGF 157
Query: 160 SAKDMVALSGAHTIGQARCV--------------AFRNRIYNESNIESSFAKNRRGNCPR 205
S ++V L +H+I A V F ++ + E+ ++
Sbjct: 158 SPVEVVWLLASHSIAAADKVDPSIPGTPFDSTPEVFDSQFFIETQLKGRLFP-------- 209
Query: 206 ATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKT 265
G+ DN + QSP L + L SD +L T + +N
Sbjct: 210 --GTADNK---GEAQSP-----------LQGEIRLQSDHLLARDPQTACEWQSMVNNQPK 253
Query: 266 FNSDFAAAMIKM 277
+ FAA M KM
Sbjct: 254 IQNRFAATMSKM 265
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 56/158 (35%), Gaps = 41/158 (25%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTI 173
GGP GR + S G++P PT + ++ R G S ++V L +H+I
Sbjct: 123 GGPRLQFLAGRSNISQPS----PDGLVPDPTDSADKILARMADIGFSPTEVVHLLASHSI 178
Query: 174 GQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHL 233
+ +++ A + P D +P+ FD Q++
Sbjct: 179 AA------------QYEVDTDVAGS-----------------PFD-STPSVFDTQFFV-- 206
Query: 234 LNQKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+ LLH Q F G V + SDFA
Sbjct: 207 ---ESLLHGTQ--FTGSGQGGEVMSPIPGEFRLQSDFA 239
>pdb|2R6G|G Chain G, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|3FH6|G Chain G, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|I Chain I, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|G Chain G, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|G Chain G, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|G Chain G, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|G Chain G, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|G Chain G, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|G Chain G, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|G Chain G, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 296
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 109 IKSKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALS 168
I ++ W + LG S+ A+ + PPP L L N + G+SA +VALS
Sbjct: 50 IPEQISWDHWKLALGF------SVEQADGRITPPPFPVLLWLWNSVKVAGISAIGIVALS 103
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 52/186 (27%)
Query: 111 SKLGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGA 170
++ GP + GR D T ++G +P + FQ ++ +++VAL GA
Sbjct: 117 QEMQGPKIPWRCGRVD--TPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGA 174
Query: 171 HTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230
H +G+ KN P + N F N+ Y
Sbjct: 175 HALGKTHL------------------KNSGYEGPWGAAN-------------NVFTNEGY 203
Query: 231 KHLLNQKG-------------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFA 271
+LLN+ +L +D L S+V YA++ F DF+
Sbjct: 204 LNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDFS 263
Query: 272 AAMIKM 277
A K+
Sbjct: 264 KAFEKL 269
>pdb|1B80|A Chain A, Rec. Lignin Peroxidase H8 Oxidatively Processed
pdb|1B80|B Chain B, Rec. Lignin Peroxidase H8 Oxidatively Processed
Length = 351
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKG-LSAKDMVALSGAHT 172
G P N GR + A G++P P T+ +INR G ++V + AH+
Sbjct: 129 GAPQMNFFTGR----APATQPAPDGLVPEPFHTVDQIINRVNDAGEFDELELVXMLSAHS 184
Query: 173 IG 174
+
Sbjct: 185 VA 186
>pdb|1LYK|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYK|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 50/159 (31%)
Query: 139 VIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKN 198
+IP P +T++ +++R G S ++V L AH++ ++ + S+ ++
Sbjct: 151 LIPGPGNTVTAILDRMGDAGFSPDEVVDLLAAHSLA------------SQEGLNSAIFRS 198
Query: 199 RRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL----NQKGL--------------- 239
PLD +P FD Q+Y L Q G
Sbjct: 199 -----------------PLD-STPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEF 240
Query: 240 -LHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 277
+ SD +L T + S+++ + AAM KM
Sbjct: 241 RMRSDALLARDSRTACRWQSMTSSNEVMGQRYRAAMAKM 279
>pdb|1LY9|A Chain A, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LY9|B Chain B, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 50/159 (31%)
Query: 139 VIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKN 198
+IP P +T++ +++R G S ++V L AH++ ++ + S+ ++
Sbjct: 151 LIPGPGNTVTAILDRMGDAGFSPDEVVDLLAAHSLA------------SQEGLNSAIFRS 198
Query: 199 RRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL----NQKGL--------------- 239
PLD +P FD Q+Y L Q G
Sbjct: 199 -----------------PLD-STPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEF 240
Query: 240 -LHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 277
+ SD +L T + S+++ + AAM KM
Sbjct: 241 RMRSDALLARDSRTACRWQSMTSSNEVMGQRYRAAMAKM 279
>pdb|1CK6|A Chain A, Binding Mode Of Salicylhydroxamic Acid To Arthromyces
Ramosus Peroxidase
pdb|1C8I|A Chain A, Binding Mode Of Hydroxylamine To Arthromyces Ramosus
Peroxidase
pdb|1ARP|A Chain A, Crystal Structure Of The Fungal Peroxidase From
Arthromyces Ramosus At 1.9 Angstroms Resolution:
Structural Comparisons With The Lignin And Cytochrome C
Peroxidases
pdb|1ARU|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARV|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARW|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARX|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARY|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1GZA|A Chain A, Peroxidase
pdb|1GZB|A Chain A, Peroxidase
pdb|1HSR|A Chain A, Binding Mode Of Benzhydroxamic Acid To Arthromyces Ramosus
Peroxidase
pdb|2E3B|A Chain A, Crystal Structure Of The Ha-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E3A|A Chain A, Crystal Structure Of The No-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E39|A Chain A, Crystal Structure Of The Cn-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
Length = 344
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/159 (20%), Positives = 59/159 (37%), Gaps = 50/159 (31%)
Query: 139 VIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKN 198
+IP P +T++ +++R G S ++V L AH++ ++ + S+ ++
Sbjct: 152 LIPGPGNTVTAILDRMGDAGFSPDEVVDLLAAHSLA------------SQEGLNSAIFRS 199
Query: 199 RRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL----NQKGL--------------- 239
PLD +P FD Q+Y L Q G
Sbjct: 200 -----------------PLD-STPQVFDTQFYIETLLKGTTQPGPSLGFAEELSPFPGEF 241
Query: 240 -LHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM 277
+ SD +L T + S+++ + AAM KM
Sbjct: 242 RMRSDALLARDSRTACRWQSMTSSNEVMGQRYRAAMAKM 280
>pdb|1B85|A Chain A, Lignin Peroxidase
pdb|1B85|B Chain B, Lignin Peroxidase
Length = 351
Score = 28.1 bits (61), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
Query: 114 GGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKG-LSAKDMVALSGAHT 172
G P N GR + A G++P P T+ +INR G ++V + AH+
Sbjct: 129 GAPQMNFFTGR----APATQPAPDGLVPEPFHTVDQIINRVNDAGEFDELELVFMLSAHS 184
Query: 173 IG 174
+
Sbjct: 185 VA 186
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,252,331
Number of Sequences: 62578
Number of extensions: 327966
Number of successful extensions: 973
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 86
Number of HSP's that attempted gapping in prelim test: 729
Number of HSP's gapped (non-prelim): 210
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)