Query 022375
Match_columns 298
No_of_seqs 179 out of 1409
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 03:02:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022375.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022375hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 3.4E-96 7E-101 691.0 22.5 267 24-298 21-324 (324)
2 cd00693 secretory_peroxidase H 100.0 1.3E-89 2.8E-94 644.0 21.9 266 27-297 1-298 (298)
3 PLN02608 L-ascorbate peroxidas 100.0 3.1E-61 6.8E-66 448.0 18.0 211 41-294 14-256 (289)
4 PF00141 peroxidase: Peroxidas 100.0 1.8E-61 4E-66 439.3 8.5 201 44-262 1-230 (230)
5 cd00691 ascorbate_peroxidase A 100.0 6.8E-59 1.5E-63 427.3 16.6 209 39-283 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 5.9E-57 1.3E-61 413.3 16.2 212 30-283 3-248 (250)
7 cd00692 ligninase Ligninase an 100.0 1.9E-55 4.2E-60 415.8 17.7 214 40-298 16-287 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 2.9E-54 6.4E-59 395.1 16.4 201 40-283 16-248 (251)
9 cd00314 plant_peroxidase_like 100.0 7.8E-51 1.7E-55 374.2 14.3 201 43-279 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 6.7E-50 1.5E-54 384.2 18.5 240 41-288 44-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 8.1E-46 1.8E-50 376.0 18.5 236 42-285 55-405 (716)
12 PRK15061 catalase/hydroperoxid 100.0 3.3E-44 7.1E-49 362.7 18.5 236 41-285 56-411 (726)
13 cd08201 plant_peroxidase_like_ 100.0 3.8E-43 8.3E-48 321.8 10.0 197 51-279 34-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 4E-31 8.6E-36 245.5 13.7 197 46-281 17-296 (297)
15 COG0376 KatG Catalase (peroxid 99.9 2.5E-26 5.4E-31 224.1 16.2 232 42-281 70-416 (730)
16 TIGR00198 cat_per_HPI catalase 99.9 1.1E-26 2.4E-31 236.7 13.8 199 42-281 428-709 (716)
17 PRK15061 catalase/hydroperoxid 99.9 6E-26 1.3E-30 230.3 14.1 195 47-281 443-721 (726)
18 COG0376 KatG Catalase (peroxid 97.8 0.00016 3.4E-09 72.5 9.9 196 47-281 453-725 (730)
19 PTZ00411 transaldolase-like pr 86.8 6.4 0.00014 38.2 10.3 60 113-173 180-252 (333)
20 TIGR00874 talAB transaldolase. 77.9 25 0.00054 33.9 10.5 142 100-267 135-310 (317)
21 cd00957 Transaldolase_TalAB Tr 68.3 38 0.00083 32.5 9.3 72 100-173 135-240 (313)
22 PRK12309 transaldolase/EF-hand 66.9 1.1E+02 0.0024 30.3 12.4 59 113-173 174-246 (391)
23 PRK12346 transaldolase A; Prov 64.7 62 0.0013 31.2 9.9 72 100-173 136-241 (316)
24 PRK05269 transaldolase B; Prov 61.4 1E+02 0.0023 29.6 10.8 61 113-173 170-242 (318)
25 PF11895 DUF3415: Domain of un 54.9 11 0.00024 29.1 2.4 18 265-282 2-19 (80)
26 PLN02161 beta-amylase 36.0 52 0.0011 33.8 4.4 34 255-292 234-272 (531)
27 cd00439 Transaldolase Transald 32.7 77 0.0017 29.4 4.8 70 100-172 126-230 (252)
28 cd00956 Transaldolase_FSA Tran 31.5 94 0.002 27.9 5.0 62 101-173 89-182 (211)
29 KOG0427 Ubiquitin conjugating 29.1 44 0.00095 28.2 2.2 26 28-70 134-159 (161)
30 PF08782 c-SKI_SMAD_bind: c-SK 29.1 18 0.00039 28.9 -0.0 14 66-80 4-17 (96)
31 COG3763 Uncharacterized protei 27.7 1.2E+02 0.0025 22.9 4.0 28 43-70 24-51 (71)
32 PRK12656 fructose-6-phosphate 27.6 75 0.0016 29.0 3.7 52 100-162 92-163 (222)
33 PRK01362 putative translaldola 25.7 74 0.0016 28.8 3.3 51 100-161 88-158 (214)
34 PF06764 DUF1223: Protein of u 25.6 58 0.0013 29.3 2.6 25 35-68 11-35 (202)
35 PLN00197 beta-amylase; Provisi 24.0 1E+02 0.0023 32.0 4.3 34 255-292 244-282 (573)
36 PRK12655 fructose-6-phosphate 24.0 1.4E+02 0.003 27.2 4.8 53 99-162 89-161 (220)
37 TIGR00875 fsa_talC_mipB fructo 23.3 82 0.0018 28.5 3.1 53 99-162 87-159 (213)
38 PLN00017 photosystem I reactio 21.7 54 0.0012 25.6 1.3 21 258-278 37-57 (90)
39 PF04225 OapA: Opacity-associa 20.7 77 0.0017 24.3 2.1 26 147-172 10-35 (85)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=3.4e-96 Score=691.01 Aligned_cols=267 Identities=39% Similarity=0.717 Sum_probs=252.4
Q ss_pred CCCCcCcccccCCChhHHHHHHHHHHHHHHhCcccccchhheeeccccCcCCCccccccCCCCCCCcCCCCCCCCchhhH
Q 022375 24 SSAQLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSFTGEKTSGPNINSARGF 103 (298)
Q Consensus 24 ~~~~L~~~fY~~sCP~~e~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSiLl~~~~~~~~Ek~~~~N~~~l~gf 103 (298)
+.++|+++||++|||++|+||+++|++++.+||+++|++|||+||||||+||||||||+++ .+||++++|. +++||
T Consensus 21 ~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~-~l~Gf 96 (324)
T PLN03030 21 QGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNL-LLRGY 96 (324)
T ss_pred hhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCc-CcchH
Confidence 3467999999999999999999999999999999999999999999999999999999965 3699999998 99999
Q ss_pred HHHHHHHhh-------------------------cCCCceeecccccCCCcccccccCCCCCCCCCCCHHHHHHHHHHCC
Q 022375 104 EVVDDIKSK-------------------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKG 158 (298)
Q Consensus 104 ~~Id~iK~~-------------------------~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~p~~~~~~l~~~F~~~G 158 (298)
++||.||++ +|||.|+|++||||+++|.+.++. + ||+|+.++++|++.|++||
T Consensus 97 ~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~-LP~p~~~~~~l~~~F~~~G 174 (324)
T PLN03030 97 DVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-N-LPGFTDSIDVQKQKFAAKG 174 (324)
T ss_pred HHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-C-CcCCCCCHHHHHHHHHHcC
Confidence 999999987 899999999999999999887775 7 9999999999999999999
Q ss_pred CChhhhHhhhcCccccccccccccccccC--------CCCcCHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCccChHHH
Q 022375 159 LSAKDMVALSGAHTIGQARCVAFRNRIYN--------ESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYY 230 (298)
Q Consensus 159 l~~~dlVaLsGaHTiG~~hc~~f~~Rl~~--------dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~Tp~~FDn~Yy 230 (298)
|+.+|||+||||||||++||.+|.+|||| ||+|||.|+.+|++.||..++ ..+.+++|+.||.+|||+||
T Consensus 175 l~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~--~~~~~~lD~~Tp~~FDn~Yy 252 (324)
T PLN03030 175 LNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGD--GSRRIALDTGSSNRFDASFF 252 (324)
T ss_pred CCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCC--CCccccCCCCCCcccccHHH
Confidence 99999999999999999999999999995 899999999999999995322 23467899999999999999
Q ss_pred HHHHhcccccccccccccCcccHHHHHhhhcCh----hHHHHHHHHHHHHhhcCCCCCCCCCccccCCCCCC
Q 022375 231 KHLLNQKGLLHSDQILFNGGSTDSLVSTYASNS----KTFNSDFAAAMIKMGDISPLTGSIGEIRKNCRRPN 298 (298)
Q Consensus 231 ~~l~~~~gll~SD~~L~~d~~t~~~V~~~A~~~----~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C~~~N 298 (298)
+||++++|+|+|||+|+.|++|+++|++||.|+ +.|+++|++||+|||+|+|+||.+|||||+|+++|
T Consensus 253 ~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 253 SNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred HHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 999999999999999999999999999999875 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.3e-89 Score=644.05 Aligned_cols=266 Identities=53% Similarity=0.917 Sum_probs=254.3
Q ss_pred CcCcccccCCChhHHHHHHHHHHHHHHhCcccccchhheeeccccCcCCCccccccCCCCCCCcCCCCCCCCchhhHHHH
Q 022375 27 QLSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDDTSSFTGEKTSGPNINSARGFEVV 106 (298)
Q Consensus 27 ~L~~~fY~~sCP~~e~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSiLl~~~~~~~~Ek~~~~N~~~l~gf~~I 106 (298)
||+++||++|||++|+||+++|++.+.+|++++|++|||+||||||+||||||||+++.++.+|+++++|. +++||++|
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~-~l~g~~~i 79 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNL-SLRGFDVI 79 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCC-CcchhHHH
Confidence 59999999999999999999999999999999999999999999999999999999987778999999999 89999999
Q ss_pred HHHHhh-------------------------cCCCceeecccccCCCcccccccCCCCCCCCCCCHHHHHHHHHHCCCCh
Q 022375 107 DDIKSK-------------------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSA 161 (298)
Q Consensus 107 d~iK~~-------------------------~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~ 161 (298)
|.||++ +|||.|+|++||+|+++|.+..+ ++ ||+|+.+++++++.|+++||++
T Consensus 80 ~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~-lP~p~~~~~~l~~~F~~~G~~~ 157 (298)
T cd00693 80 DDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GN-LPSPFFSVSQLISLFASKGLTV 157 (298)
T ss_pred HHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cC-CCCcccCHHHHHHHHHHcCCCH
Confidence 999986 79999999999999998887766 66 9999999999999999999999
Q ss_pred hhhHhhhcCccccccccccccccccC-------CCCcCHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCccChHHHHHHH
Q 022375 162 KDMVALSGAHTIGQARCVAFRNRIYN-------ESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL 234 (298)
Q Consensus 162 ~dlVaLsGaHTiG~~hc~~f~~Rl~~-------dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~ 234 (298)
+|||+|+||||||++||.+|.+|||+ ||+||+.|+..|++.||...+ +.+.+++|+.||.+|||+||++|+
T Consensus 158 ~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~--~~~~~~lD~~Tp~~FDn~Yy~~l~ 235 (298)
T cd00693 158 TDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGD--DDTLVPLDPGTPNTFDNSYYKNLL 235 (298)
T ss_pred HHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCC--CCccccCCCCCCCccccHHHHHHH
Confidence 99999999999999999999999985 899999999999999996533 456789999999999999999999
Q ss_pred hcccccccccccccCcccHHHHHhhhcChhHHHHHHHHHHHHhhcCCCCCCCCCccccCCCCC
Q 022375 235 NQKGLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIRKNCRRP 297 (298)
Q Consensus 235 ~~~gll~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C~~~ 297 (298)
.++|+|+||++|+.|++|+++|++||.||+.|+++|++||+||+++||+||.+||||++|+++
T Consensus 236 ~~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 236 AGRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred hcccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999999999999999999999999999999999999999999999999999975
No 3
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=3.1e-61 Score=448.00 Aligned_cols=211 Identities=30% Similarity=0.505 Sum_probs=189.1
Q ss_pred HHHHHHHHHHHHHhCcccccchhheeecccc-------CcCCCccccccCCCCCCCcCCCCCCCCch-hhHHHHHHHHhh
Q 022375 41 LNTVKSAVQSAVSKERRMGASLLRLHFHDCF-------VNGCDGSILLDDTSSFTGEKTSGPNINSA-RGFEVVDDIKSK 112 (298)
Q Consensus 41 e~iV~~~v~~~~~~d~~~aa~llRL~FHDCf-------v~GCDaSiLl~~~~~~~~Ek~~~~N~~~l-~gf~~Id~iK~~ 112 (298)
-+.++++|++ +.+||+++|.+|||+||||| ++||||||+++ +|+++++|. ++ +||++||.||++
T Consensus 14 ~~~~~~~~~~-~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~-gL~~g~~vid~iK~~ 85 (289)
T PLN02608 14 IEKARRDLRA-LIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANN-GLKIAIDLCEPVKAK 85 (289)
T ss_pred HHHHHHHHHH-HHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCcccc-chHHHHHHHHHHHHH
Confidence 3566777755 66799999999999999999 99999999984 599999998 77 699999999986
Q ss_pred --------------------cCCCceeecccccCCCcccccccCCCCCCCCCCCHHHHHHHHHHCCCChhhhHhhhcCcc
Q 022375 113 --------------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHT 172 (298)
Q Consensus 113 --------------------~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHT 172 (298)
+|||.|+|++||+|++++.+ +++ ||+|+.+++++++.|+++||+++|||+|+||||
T Consensus 86 ~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~-LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHT 161 (289)
T PLN02608 86 HPKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPE---EGR-LPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHT 161 (289)
T ss_pred cCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCc---cCC-CcCCCCCHHHHHHHHHHcCCCHHHHhhhccccc
Confidence 89999999999999999864 356 999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCCcCHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCccChHHHHHHHhc--ccc--ccccccccc
Q 022375 173 IGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQ--KGL--LHSDQILFN 248 (298)
Q Consensus 173 iG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~--~gl--l~SD~~L~~ 248 (298)
||++||. |+ + | . + +++ .||.+|||+||++|+.+ +|+ |+||++|+.
T Consensus 162 iG~ahc~----r~-g-------~----------~-g-------~~~-~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~~ 210 (289)
T PLN02608 162 LGRAHPE----RS-G-------F----------D-G-------PWT-KEPLKFDNSYFVELLKGESEGLLKLPTDKALLE 210 (289)
T ss_pred ccccccc----CC-C-------C----------C-C-------CCC-CCCCccChHHHHHHHcCCcCCccccccCHhhhc
Confidence 9999994 43 0 0 0 1 233 69999999999999998 788 799999999
Q ss_pred CcccHHHHHhhhcChhHHHHHHHHHHHHhhcCCCCCCCCCccccCC
Q 022375 249 GGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIRKNC 294 (298)
Q Consensus 249 d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C 294 (298)
|++|+++|+.||.|+++|+++|++||+||++|||+||++||+.+.-
T Consensus 211 d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~ 256 (289)
T PLN02608 211 DPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKST 256 (289)
T ss_pred ChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccC
Confidence 9999999999999999999999999999999999999999998754
No 4
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.8e-61 Score=439.31 Aligned_cols=201 Identities=51% Similarity=0.876 Sum_probs=183.3
Q ss_pred HHHHHHHHHHhCcccccchhheeeccccC-cCCCccccccCCCCCCCcCCCCCCCCchh-hHHHHHHHHhh---------
Q 022375 44 VKSAVQSAVSKERRMGASLLRLHFHDCFV-NGCDGSILLDDTSSFTGEKTSGPNINSAR-GFEVVDDIKSK--------- 112 (298)
Q Consensus 44 V~~~v~~~~~~d~~~aa~llRL~FHDCfv-~GCDaSiLl~~~~~~~~Ek~~~~N~~~l~-gf~~Id~iK~~--------- 112 (298)
||++|++.+.++++++|+||||+|||||+ +|||||||+. .+|+++++|. +++ |+++|+.||++
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~-gl~~~~~~i~~ik~~~~~~cp~~V 74 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNR-GLRDGFDVIDPIKAKLEAACPGVV 74 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGT-THHHHHHHHHHHHHHHCHHSTTTS
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----cccccccccc-CcceeeechhhHHhhhcccccCCC
Confidence 89999999999999999999999999999 9999999983 4699999999 777 99999999987
Q ss_pred ----------------cCCCceeecccccCCCcccccccCCCCCCCCCCCHHHHHHHHHHCCCChhhhHhhhcCcccccc
Q 022375 113 ----------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIGQA 176 (298)
Q Consensus 113 ----------------~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG~~ 176 (298)
+|||.|+|++||+|+++|.+.++ .+ ||.|..++++|++.|+++|||++|||||+||||||++
T Consensus 75 S~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~-lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~ 152 (230)
T PF00141_consen 75 SCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SN-LPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRA 152 (230)
T ss_dssp -HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HH-SSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEE
T ss_pred CHHHHHHHHhhhccccccccccccccccccccccccccc-cc-ccccccccchhhhhhhccccchhhhcceecccccccc
Confidence 89999999999999999999887 67 9999999999999999999999999999999999999
Q ss_pred ccccccccccC--CCCcCHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCccChHHHHHHHhcccccccccccccCcccHH
Q 022375 177 RCVAFRNRIYN--ESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKGLLHSDQILFNGGSTDS 254 (298)
Q Consensus 177 hc~~f~~Rl~~--dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~gll~SD~~L~~d~~t~~ 254 (298)
||.+|. |||. ||+||+.|+.. .| ..+ +++.+++| ||.+|||+||++|++++|+|.||++|+.|++|++
T Consensus 153 ~c~~f~-rl~~~~dp~~d~~~~~~---~C-~~~---~~~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~ 222 (230)
T PF00141_consen 153 HCSSFS-RLYFPPDPTMDPGYAGQ---NC-NSG---GDNGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRP 222 (230)
T ss_dssp SGGCTG-GTSCSSGTTSTHHHHHH---SS-STS---GCTCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHH
T ss_pred eecccc-cccccccccccccccee---cc-CCC---cccccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHH
Confidence 999999 9995 89999999988 99 432 23367888 9999999999999999999999999999999999
Q ss_pred HHHhhhcC
Q 022375 255 LVSTYASN 262 (298)
Q Consensus 255 ~V~~~A~~ 262 (298)
+|++||+|
T Consensus 223 ~V~~yA~d 230 (230)
T PF00141_consen 223 IVERYAQD 230 (230)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhcC
Confidence 99999976
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=6.8e-59 Score=427.32 Aligned_cols=209 Identities=27% Similarity=0.466 Sum_probs=188.5
Q ss_pred hHHHHHHHHHHHHHHhCcccccchhheeeccccCcCCCccccccC---CCCCCCcCCCCCCCCch-hhHHHHHHHHhh--
Q 022375 39 KLLNTVKSAVQSAVSKERRMGASLLRLHFHDCFVNGCDGSILLDD---TSSFTGEKTSGPNINSA-RGFEVVDDIKSK-- 112 (298)
Q Consensus 39 ~~e~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSiLl~~---~~~~~~Ek~~~~N~~~l-~gf~~Id~iK~~-- 112 (298)
..++||+++|++.++ +++++|++|||+||||| +||+|+++++ +..+.+|+++++|. ++ +||++||.||++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~--~~d~s~~~~G~d~s~~~~~E~~~~~N~-~L~~~~~~i~~iK~~~~ 86 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSG--TYDKETKTGGSNGTIRFDPELNHGANA-GLDIARKLLEPIKKKYP 86 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHh--ccccccCCCCCCccccchhhcCCcccc-chHHHHHHHHHHHHHcC
Confidence 457899999999999 99999999999999999 5888888754 33345799999998 56 999999999996
Q ss_pred ------------------cCCCceeecccccCCCcccccccCCCCCCCCCCCHHHHHHHHHHCCCChhhhHhhhcCcccc
Q 022375 113 ------------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAHTIG 174 (298)
Q Consensus 113 ------------------~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHTiG 174 (298)
+|||.|+|++||+|+++|....++.+ ||.|+.++++|++.|+++||+++|||+|+||||||
T Consensus 87 ~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~-lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaHTiG 165 (253)
T cd00691 87 DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGR-LPDASKGADHLRDVFYRMGFNDQEIVALSGAHTLG 165 (253)
T ss_pred CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccC-CCCCCCCHHHHHHHHHhcCCCHHHHHHhcccceee
Confidence 89999999999999999987777777 99999999999999999999999999999999999
Q ss_pred ccccccccccccCCCCcCHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCccChHHHHHHHhccc--------cccccccc
Q 022375 175 QARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG--------LLHSDQIL 246 (298)
Q Consensus 175 ~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~g--------ll~SD~~L 246 (298)
++||.. + + | . + ++ ..||.+|||+||++|+.++| +|+||++|
T Consensus 166 ~a~c~~----~-~-------~----------~-g-------~~-~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~sD~~L 214 (253)
T cd00691 166 RCHKER----S-G-------Y----------D-G-------PW-TKNPLKFDNSYFKELLEEDWKLPTPGLLMLPTDKAL 214 (253)
T ss_pred cccccC----C-C-------C----------C-C-------CC-CCCCCcccHHHHHHHhcCCCccCcCcceechhhHHH
Confidence 999943 1 0 0 0 1 12 26999999999999999999 99999999
Q ss_pred ccCcccHHHHHhhhcChhHHHHHHHHHHHHhhcCCCC
Q 022375 247 FNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPL 283 (298)
Q Consensus 247 ~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~igv~ 283 (298)
+.|++|+++|+.||.|+++|+++|++||+||+++||.
T Consensus 215 ~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 215 LEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred HcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999986
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=5.9e-57 Score=413.31 Aligned_cols=212 Identities=31% Similarity=0.541 Sum_probs=187.7
Q ss_pred cccccCC--ChhHHHHHHHHHHHHHHhCcccccchhheeec-----cccCc--CCCccccccCCCCCCCcCCCCCCCCch
Q 022375 30 TNFYSKT--CPKLLNTVKSAVQSAVSKERRMGASLLRLHFH-----DCFVN--GCDGSILLDDTSSFTGEKTSGPNINSA 100 (298)
Q Consensus 30 ~~fY~~s--CP~~e~iV~~~v~~~~~~d~~~aa~llRL~FH-----DCfv~--GCDaSiLl~~~~~~~~Ek~~~~N~~~l 100 (298)
.+||..+ ||.+++.++..+++.+ .|++++|.||||+|| ||+++ ||||||.. .+|+++++|.+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl~ 75 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGIH 75 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCHH
Confidence 4677644 8999999999999988 789999999999999 88887 99999943 4699999998434
Q ss_pred hhHHHHHHHHhh--------------------cCCCceeecccccCCCcccccccCCCCCCCCCCCHHHHHHHHHH-CCC
Q 022375 101 RGFEVVDDIKSK--------------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQA-KGL 159 (298)
Q Consensus 101 ~gf~~Id~iK~~--------------------~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~p~~~~~~l~~~F~~-~Gl 159 (298)
+||++|+.||++ +|||.|+|++||+|+++|.+ +++ ||.|+.++++|++.|++ +||
T Consensus 76 ~~~~~i~~ik~~~~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~-lP~p~~~~~~l~~~F~~~~Gl 151 (250)
T PLN02364 76 IALRLLDPIREQFPTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGR-LPDATKGCDHLRDVFAKQMGL 151 (250)
T ss_pred HHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCC-CCCCCcCHHHHHHHHHHhcCC
Confidence 899999999996 89999999999999999875 346 99999999999999997 599
Q ss_pred ChhhhHhhhcCccccccccccccccccCCCCcCHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCccChHHHHHHHhc--c
Q 022375 160 SAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQ--K 237 (298)
Q Consensus 160 ~~~dlVaLsGaHTiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~--~ 237 (298)
|++|||+|+||||||++|| .|+. | . + +++ .||.+|||+||++|+.+ +
T Consensus 152 ~~~d~VaLsGaHTiG~~hc----~r~~--------~----------~-g-------~~~-~tp~~fDn~Yy~~ll~~~~~ 200 (250)
T PLN02364 152 SDKDIVALSGAHTLGRCHK----DRSG--------F----------E-G-------AWT-SNPLIFDNSYFKELLSGEKE 200 (250)
T ss_pred CHHHheeeecceeeccccC----CCCC--------C----------C-C-------CCC-CCCCccchHHHHHHhcCCcC
Confidence 9999999999999999999 3430 0 0 1 233 69999999999999999 8
Q ss_pred cccc--cccccccCcccHHHHHhhhcChhHHHHHHHHHHHHhhcCCCC
Q 022375 238 GLLH--SDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPL 283 (298)
Q Consensus 238 gll~--SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~igv~ 283 (298)
|+|. ||++|+.|++|+.+|+.||.|++.|+++|++||+||++||+-
T Consensus 201 gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 201 GLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred CCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 9876 999999999999999999999999999999999999999973
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.9e-55 Score=415.85 Aligned_cols=214 Identities=27% Similarity=0.455 Sum_probs=187.8
Q ss_pred HHHHHHHHHHHHHHhC---cccccchhheeeccccC------------cCCCccccccCCCCCCCcCCCCCCCCchhhHH
Q 022375 40 LLNTVKSAVQSAVSKE---RRMGASLLRLHFHDCFV------------NGCDGSILLDDTSSFTGEKTSGPNINSARGFE 104 (298)
Q Consensus 40 ~e~iV~~~v~~~~~~d---~~~aa~llRL~FHDCfv------------~GCDaSiLl~~~~~~~~Ek~~~~N~~~l~gf~ 104 (298)
+|..|+++|++.+..+ ...|+.+|||+|||||+ +||||||||+++ .|+++++|. +++ +
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~-gL~--~ 88 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANI-GLD--E 88 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCC-CHH--H
Confidence 4789999999999854 45678899999999996 899999999854 599999998 777 8
Q ss_pred HHHHHHhh-----------------------cCCCceeecccccCCCcccccccCCCCCCCCCCCHHHHHHHHHHCCCCh
Q 022375 105 VVDDIKSK-----------------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSA 161 (298)
Q Consensus 105 ~Id~iK~~-----------------------~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~ 161 (298)
+|+.+|.. +|||.|+|++||+|++++.+. ++ ||.|+.++++|++.|++|||++
T Consensus 89 vvd~lk~~~e~~cVScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~---g~-LP~p~~sv~~l~~~F~~~Gf~~ 164 (328)
T cd00692 89 IVEALRPFHQKHNVSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPD---GL-VPEPFDSVDKILARFADAGFSP 164 (328)
T ss_pred HHHHHHHHHHhcCcCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcc---cC-CCCCCCCHHHHHHHHHHcCCCH
Confidence 88888875 599999999999999998754 45 9999999999999999999999
Q ss_pred hhhHhhhcCccccccccccccccccCCCCcCHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCccChHHHHHHH-hccc--
Q 022375 162 KDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLL-NQKG-- 238 (298)
Q Consensus 162 ~dlVaLsGaHTiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~-~~~g-- 238 (298)
+|||+|+||||||++|. + ||+++ + ++|| .||.+|||+||++++ ++++
T Consensus 165 ~E~VaLsGAHTiG~a~~------~--Dps~~---------------g------~p~D-~TP~~FDn~Yf~~ll~~~~~~~ 214 (328)
T cd00692 165 DELVALLAAHSVAAQDF------V--DPSIA---------------G------TPFD-STPGVFDTQFFIETLLKGTAFP 214 (328)
T ss_pred HHHhhhcccccccccCC------C--CCCCC---------------C------CCCC-CCcchhcHHHHHHHHHcCCCCC
Confidence 99999999999999982 1 56654 1 3688 599999999999988 4555
Q ss_pred -----------------ccccccccccCcccHHHHHhhhcChhHHHHHHHHHHHHhhcCCCCCCCCCccccCCCCCC
Q 022375 239 -----------------LLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPLTGSIGEIRKNCRRPN 298 (298)
Q Consensus 239 -----------------ll~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C~~~N 298 (298)
+|+||++|+.|++|+.+|++||.||++|+++|++||+||+++||. ...+..|+.|+
T Consensus 215 g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~~l~dcs~v~ 287 (328)
T cd00692 215 GSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NISLTDCSDVI 287 (328)
T ss_pred CccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cchhccCcccC
Confidence 499999999999999999999999999999999999999999987 33788999875
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=2.9e-54 Score=395.07 Aligned_cols=201 Identities=28% Similarity=0.455 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHHHHhCcccccchhheeecccc-------CcCCCccccccCCCCCCCcCCCCCCCCchh-hHHHHHHHHh
Q 022375 40 LLNTVKSAVQSAVSKERRMGASLLRLHFHDCF-------VNGCDGSILLDDTSSFTGEKTSGPNINSAR-GFEVVDDIKS 111 (298)
Q Consensus 40 ~e~iV~~~v~~~~~~d~~~aa~llRL~FHDCf-------v~GCDaSiLl~~~~~~~~Ek~~~~N~~~l~-gf~~Id~iK~ 111 (298)
..+-++..+++.+ .+...+|.+|||+||||. .+||||||.+. .|+++++|. +++ ++++||.||+
T Consensus 16 ~~~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~------~E~~~~~N~-gL~~~~~~i~~iK~ 87 (251)
T PLN02879 16 AVQRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP------QELAHDANN-GLDIAVRLLDPIKE 87 (251)
T ss_pred HHHHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh------hhccCCCcC-ChHHHHHHHHHHHH
Confidence 3345677777776 467899999999999996 48999999763 599999999 666 9999999998
Q ss_pred h--------------------cCCCceeecccccCCCcccccccCCCCCCCCCCCHHHHHHHHHHCCCChhhhHhhhcCc
Q 022375 112 K--------------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSGAH 171 (298)
Q Consensus 112 ~--------------------~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaH 171 (298)
+ +|||.|+|++||+|+.++.+ +++ ||+|+.++++|++.|++|||+++|||||+|||
T Consensus 88 ~~~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~---~~~-lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaH 163 (251)
T PLN02879 88 LFPILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP---EGR-LPQATKGVDHLRDVFGRMGLNDKDIVALSGGH 163 (251)
T ss_pred HcCCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc---ccC-CCCCCCCHHHHHHHHHHcCCCHHHHeeeeccc
Confidence 7 89999999999999998864 456 99999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCcCHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCccChHHHHHHHhc--ccc--cccccccc
Q 022375 172 TIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQ--KGL--LHSDQILF 247 (298)
Q Consensus 172 TiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~--~gl--l~SD~~L~ 247 (298)
|||++||. |. + .. .+|| .||.+|||+||++|+.+ +|+ |+||++|+
T Consensus 164 TiG~ah~~----r~----------------------g--~~--g~~d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL~ 212 (251)
T PLN02879 164 TLGRCHKE----RS----------------------G--FE--GAWT-PNPLIFDNSYFKEILSGEKEGLLQLPTDKALL 212 (251)
T ss_pred cccccccc----cc----------------------c--CC--CCCC-CCccceeHHHHHHHHcCCcCCCccchhhHHHh
Confidence 99999994 31 1 00 1255 69999999999999999 898 67999999
Q ss_pred cCcccHHHHHhhhcChhHHHHHHHHHHHHhhcCCCC
Q 022375 248 NGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDISPL 283 (298)
Q Consensus 248 ~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~igv~ 283 (298)
.||+|+++|++||.||++|+++|++||+||++|||.
T Consensus 213 ~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 213 DDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred cCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999985
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=7.8e-51 Score=374.20 Aligned_cols=201 Identities=35% Similarity=0.546 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHhCcccccchhheeeccccCc--------CCCccccccCCCCCCCcCCCCCCCCchhhHHHHHHHHhh--
Q 022375 43 TVKSAVQSAVSKERRMGASLLRLHFHDCFVN--------GCDGSILLDDTSSFTGEKTSGPNINSARGFEVVDDIKSK-- 112 (298)
Q Consensus 43 iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~--------GCDaSiLl~~~~~~~~Ek~~~~N~~~l~gf~~Id~iK~~-- 112 (298)
.|++.|++.+.+++.+++++|||+|||||+. ||||||++++ |+++++|.++.+++++||.||.+
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~------e~~~~~N~~l~~~~~~l~~ik~~~~ 75 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEP------ELDRPENGGLDKALRALEPIKSAYD 75 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccc------cccCcccccHHHHHHHHHHHHHHcC
Confidence 5888999999999999999999999999996 9999999974 99999998557999999999985
Q ss_pred ---------------------c--CCCceeecccccCCCccc--ccccCCCCCCCCCCCHHHHHHHHHHCCCChhhhHhh
Q 022375 113 ---------------------L--GGPSWNVKLGRRDSKTAS--LAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVAL 167 (298)
Q Consensus 113 ---------------------~--GGP~~~v~~GRrD~~~s~--~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaL 167 (298)
+ |||.|+|++||+|+.++. ...+..+ +|.|..+++++++.|.++||+++|||||
T Consensus 76 ~~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~-~p~~~~~~~~~~~~F~~~Gl~~~e~VAL 154 (255)
T cd00314 76 GGNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGL-LPNETSSATELRDKFKRMGLSPSELVAL 154 (255)
T ss_pred CCCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCC-CCCccchHHHHHHHHHHcCCCHHHHHhh
Confidence 5 999999999999999764 2233445 8888889999999999999999999999
Q ss_pred h-cCccc-cccccccccccccCCCCcCHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCccChHHHHHHHhcc--------
Q 022375 168 S-GAHTI-GQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQK-------- 237 (298)
Q Consensus 168 s-GaHTi-G~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~-------- 237 (298)
+ ||||| |++||..+..|+ | .+|+.||.+|||+||++|+.++
T Consensus 155 ~~GaHti~G~~~~~~~~~~~-----------------~------------~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~ 205 (255)
T cd00314 155 SAGAHTLGGKNHGDLLNYEG-----------------S------------GLWTSTPFTFDNAYFKNLLDMNWEWRVGSP 205 (255)
T ss_pred ccCCeeccCcccCCCCCccc-----------------C------------CCCCCCCCccchHHHHHHhcCCcccccCCc
Confidence 9 99999 999998876663 2 1345799999999999999988
Q ss_pred --------cccccccccccCcccHHHHHhhhcChhHHHHHHHHHHHHhhc
Q 022375 238 --------GLLHSDQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGD 279 (298)
Q Consensus 238 --------gll~SD~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~ 279 (298)
++|+||++|+.|++|+.+|+.||.|+++|+++|++||+||++
T Consensus 206 ~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 206 DPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred cCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999984
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=6.7e-50 Score=384.16 Aligned_cols=240 Identities=21% Similarity=0.346 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHhC--------cccccchhheeeccccC-------cCCC-ccccccCCCCCCCcCCCCCCCCchhhHH
Q 022375 41 LNTVKSAVQSAVSKE--------RRMGASLLRLHFHDCFV-------NGCD-GSILLDDTSSFTGEKTSGPNINSARGFE 104 (298)
Q Consensus 41 e~iV~~~v~~~~~~d--------~~~aa~llRL~FHDCfv-------~GCD-aSiLl~~~~~~~~Ek~~~~N~~~l~gf~ 104 (298)
.+.|++.|++.+... ...+|.||||+|||+.+ +|++ |+|.+. +|++++.|.++.++.+
T Consensus 44 ~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~------pe~~~~~N~gL~~a~~ 117 (409)
T cd00649 44 LEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA------PLNSWPDNVNLDKARR 117 (409)
T ss_pred HHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc------cccCcHhhhhHHHHHH
Confidence 378999999999864 37999999999999984 7886 788654 5999999997667999
Q ss_pred HHHHHHhh---------------------cCCCceeecccccCCCccccc------------------------------
Q 022375 105 VVDDIKSK---------------------LGGPSWNVKLGRRDSKTASLA------------------------------ 133 (298)
Q Consensus 105 ~Id~iK~~---------------------~GGP~~~v~~GRrD~~~s~~~------------------------------ 133 (298)
+++.||++ +|||.+++..||.|...+...
T Consensus 118 ~L~pik~k~~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~m 197 (409)
T cd00649 118 LLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQM 197 (409)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhc
Confidence 99999997 899999999999999754320
Q ss_pred -------ccCCCCCCCCCCCHHHHHHHHHHCCCChhhhHhh-hcCccccccccccccccccCCCCcCHHHHHHhh--ccC
Q 022375 134 -------AANSGVIPPPTSTLSNLINRFQAKGLSAKDMVAL-SGAHTIGQARCVAFRNRIYNESNIESSFAKNRR--GNC 203 (298)
Q Consensus 134 -------~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaL-sGaHTiG~~hc~~f~~Rl~~dp~~d~~~~~~L~--~~C 203 (298)
+.... ||+|..++.+|++.|++||||++||||| +||||||++||..|.+||+.||.+++.|++.|+ ..|
T Consensus 198 gliyv~Pegp~g-LPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg~dP~~~~~~~~gLgw~~~C 276 (409)
T cd00649 198 GLIYVNPEGPDG-NPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVGPEPEAAPIEQQGLGWKNSY 276 (409)
T ss_pred cccccCCCCCCC-CCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCCCCCCcCHHHHHhhcccccC
Confidence 11225 9999999999999999999999999999 599999999999999999889999999999996 899
Q ss_pred CCCCCCCCCCCCCCC---CCCCCccChHHHHHHHh------------------------------------ccccccccc
Q 022375 204 PRATGSGDNNLAPLD---FQSPNKFDNQYYKHLLN------------------------------------QKGLLHSDQ 244 (298)
Q Consensus 204 p~~~~~~~~~~~~lD---~~Tp~~FDn~Yy~~l~~------------------------------------~~gll~SD~ 244 (298)
|...+. +.....+| +.||.+|||+||++|+. +++||+||+
T Consensus 277 p~g~g~-~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~gmL~SD~ 355 (409)
T cd00649 277 GTGKGK-DTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPMMLTTDL 355 (409)
T ss_pred CCCCCC-CCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcccchhhH
Confidence 964331 22234577 57999999999999998 568999999
Q ss_pred ccccCcccHHHHHhhhcChhHHHHHHHHHHHHh--hcCCCCCCCCC
Q 022375 245 ILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKM--GDISPLTGSIG 288 (298)
Q Consensus 245 ~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km--~~igv~tg~~G 288 (298)
+|+.|++|+++|++||.|+++||++|++||+|| +.+|+++---|
T Consensus 356 aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 356 ALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred hhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 999999999999999999999999999999999 68999886544
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=8.1e-46 Score=376.02 Aligned_cols=236 Identities=21% Similarity=0.313 Sum_probs=203.6
Q ss_pred HHHHHHHHHHHHhC--------cccccchhheeeccccC-------cCC-CccccccCCCCCCCcCCCCCCCCchhhHHH
Q 022375 42 NTVKSAVQSAVSKE--------RRMGASLLRLHFHDCFV-------NGC-DGSILLDDTSSFTGEKTSGPNINSARGFEV 105 (298)
Q Consensus 42 ~iV~~~v~~~~~~d--------~~~aa~llRL~FHDCfv-------~GC-DaSiLl~~~~~~~~Ek~~~~N~~~l~gf~~ 105 (298)
+.|++.|++.+... ...+|-+|||+||++.+ +|| .|+|.+. +|++++.|.++.++..+
T Consensus 55 ~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~------P~~sw~~N~~Ldka~~l 128 (716)
T TIGR00198 55 AAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA------PLNSWPDNVNLDKARRL 128 (716)
T ss_pred HHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc------cccCchhhhhHHHHHHH
Confidence 57999999999864 36899999999999985 788 4777554 69999999977789999
Q ss_pred HHHHHhh---------------------cCCCceeecccccCCCccc---------------------------------
Q 022375 106 VDDIKSK---------------------LGGPSWNVKLGRRDSKTAS--------------------------------- 131 (298)
Q Consensus 106 Id~iK~~---------------------~GGP~~~v~~GRrD~~~s~--------------------------------- 131 (298)
++.||++ +|||.|+|.+||+|+..+.
T Consensus 129 L~pIk~kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~Gl 208 (716)
T TIGR00198 129 LWPIKKKYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMGL 208 (716)
T ss_pred HHHHHHHCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhccc
Confidence 9999998 8999999999999994221
Q ss_pred ----ccccCCCCCCCCCCCHHHHHHHHHHCCCChhhhHhhh-cCccccccccccccccccCCCCcCHHHHHHhhccCCCC
Q 022375 132 ----LAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALS-GAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRA 206 (298)
Q Consensus 132 ----~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~ 206 (298)
+.. ... ||+|..++++|++.|++||||++|||||+ ||||||++||.+|.+||..||+++|.|++.|++.||..
T Consensus 209 iyvnpeg-~~~-lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rlg~dP~~~~~~~~gLg~~c~~~ 286 (716)
T TIGR00198 209 IYVNPEG-PDG-HPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELIGPDPEGAPIEEQGLGWHNQYG 286 (716)
T ss_pred cccCccc-ccC-CCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccCCCCCCcCHHHHHHhcccCCCC
Confidence 122 225 99999999999999999999999999995 99999999999999999789999999999999999964
Q ss_pred CCCCCCC-CCCCC---CCCCCccChHHHHHHHhc----------------------------------cccccccccccc
Q 022375 207 TGSGDNN-LAPLD---FQSPNKFDNQYYKHLLNQ----------------------------------KGLLHSDQILFN 248 (298)
Q Consensus 207 ~~~~~~~-~~~lD---~~Tp~~FDn~Yy~~l~~~----------------------------------~gll~SD~~L~~ 248 (298)
.+.+.++ .+.+| +.||.+|||+||+||+.+ +++|+||++|..
T Consensus 287 ~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL~SDlaL~~ 366 (716)
T TIGR00198 287 KGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIMLDADLALRF 366 (716)
T ss_pred CCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCccchhHHhcc
Confidence 3211222 34566 579999999999999975 689999999999
Q ss_pred CcccHHHHHhhhcChhHHHHHHHHHHHHhh--cCCCCCC
Q 022375 249 GGSTDSLVSTYASNSKTFNSDFAAAMIKMG--DISPLTG 285 (298)
Q Consensus 249 d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~--~igv~tg 285 (298)
||+|+++|+.||.|+++|+++|++||+||+ .+|++.-
T Consensus 367 Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~ 405 (716)
T TIGR00198 367 DPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSR 405 (716)
T ss_pred CccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhh
Confidence 999999999999999999999999999999 4666543
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=3.3e-44 Score=362.65 Aligned_cols=236 Identities=19% Similarity=0.336 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHhC--------cccccchhheeeccccC-------cCCC-ccccccCCCCCCCcCCCCCCCCchhhHH
Q 022375 41 LNTVKSAVQSAVSKE--------RRMGASLLRLHFHDCFV-------NGCD-GSILLDDTSSFTGEKTSGPNINSARGFE 104 (298)
Q Consensus 41 e~iV~~~v~~~~~~d--------~~~aa~llRL~FHDCfv-------~GCD-aSiLl~~~~~~~~Ek~~~~N~~~l~gf~ 104 (298)
.+.|++.|++.+... ...+|-+|||+||++.+ +||+ |+|.+ .+|++++.|.++.++.+
T Consensus 56 ~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf------~pe~~w~~N~gL~ka~~ 129 (726)
T PRK15061 56 LEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRF------APLNSWPDNVNLDKARR 129 (726)
T ss_pred HHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccC------cccccchhhhhHHHHHH
Confidence 467999999999864 47999999999999984 7886 77755 46999999997778999
Q ss_pred HHHHHHhh---------------------cCCCceeecccccCCCcccc-------------------------------
Q 022375 105 VVDDIKSK---------------------LGGPSWNVKLGRRDSKTASL------------------------------- 132 (298)
Q Consensus 105 ~Id~iK~~---------------------~GGP~~~v~~GRrD~~~s~~------------------------------- 132 (298)
+++.||++ +|||.+++..||.|...+..
T Consensus 130 ~L~pik~ky~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~ 209 (726)
T PRK15061 130 LLWPIKQKYGNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQ 209 (726)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhhh
Confidence 99999997 89999999999999864322
Q ss_pred --------cccCCCCCCCCCCCHHHHHHHHHHCCCChhhhHhhh-cCccccccccccccccccCCCCcCHHHHHHhh--c
Q 022375 133 --------AAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALS-GAHTIGQARCVAFRNRIYNESNIESSFAKNRR--G 201 (298)
Q Consensus 133 --------~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~~hc~~f~~Rl~~dp~~d~~~~~~L~--~ 201 (298)
+.. .. +|+|..++.+|++.|++||||++|||||+ ||||||++||..|.+||..||.+++.+++.|+ .
T Consensus 210 mgliyvnpegp-~g-lPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rlgpdP~~a~~~~qgLgw~~ 287 (726)
T PRK15061 210 MGLIYVNPEGP-NG-NPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHVGPEPEAAPIEEQGLGWKN 287 (726)
T ss_pred ccceecCCCCC-CC-CCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcccccCCCCCcCHHHHHhccccc
Confidence 111 23 79999999999999999999999999995 99999999999999999889999999999985 8
Q ss_pred cCCCCCCCCCCCCCCCC---CCCCCccChHHHHHHHhc------------------------------------cccccc
Q 022375 202 NCPRATGSGDNNLAPLD---FQSPNKFDNQYYKHLLNQ------------------------------------KGLLHS 242 (298)
Q Consensus 202 ~Cp~~~~~~~~~~~~lD---~~Tp~~FDn~Yy~~l~~~------------------------------------~gll~S 242 (298)
.||.+.+. +.....+| +.||.+|||+||++|+.+ .+||+|
T Consensus 288 ~c~~g~g~-dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~~~~~MLtS 366 (726)
T PRK15061 288 SYGSGKGA-DTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKKHAPTMLTT 366 (726)
T ss_pred cCCCCCCC-CCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccccCcccccc
Confidence 99964331 22234466 579999999999999985 589999
Q ss_pred ccccccCcccHHHHHhhhcChhHHHHHHHHHHHHhhc--CCCCCC
Q 022375 243 DQILFNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGD--ISPLTG 285 (298)
Q Consensus 243 D~~L~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~--igv~tg 285 (298)
|++|..||+++++|++||.|+++|+++|++||+||.+ +|+++-
T Consensus 367 D~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~r 411 (726)
T PRK15061 367 DLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSR 411 (726)
T ss_pred cHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhh
Confidence 9999999999999999999999999999999999955 776654
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=3.8e-43 Score=321.85 Aligned_cols=197 Identities=27% Similarity=0.383 Sum_probs=162.8
Q ss_pred HHHhCcccccchhheeecccc-------CcCCCccccccCCCCCCCcCC-CCCCCCchhhHHHHHHHHhh----------
Q 022375 51 AVSKERRMGASLLRLHFHDCF-------VNGCDGSILLDDTSSFTGEKT-SGPNINSARGFEVVDDIKSK---------- 112 (298)
Q Consensus 51 ~~~~d~~~aa~llRL~FHDCf-------v~GCDaSiLl~~~~~~~~Ek~-~~~N~~~l~gf~~Id~iK~~---------- 112 (298)
+...+++++|+||||+||||| ++||||||+|+.. .+|+. ..+|. ++++|+.|+.+|-.
T Consensus 34 ~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~-~l~~~~~i~~~~VScADiialAa~ 109 (264)
T cd08201 34 APGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNT-TLNFFVNFYSPRSSMADLIAMGVV 109 (264)
T ss_pred CcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhh-ccccceeeccCccCHHHHHHHHHH
Confidence 334789999999999999999 8999999999843 46888 45565 88999988765422
Q ss_pred -----cCCCceeecccccCCCcccccccCCCCCCCCCCCHHHHHHHHHHCCCChhhhHhhhc-Ccccccccccccccccc
Q 022375 113 -----LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALSG-AHTIGQARCVAFRNRIY 186 (298)
Q Consensus 113 -----~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG-aHTiG~~hc~~f~~Rl~ 186 (298)
+|||.|+|++||+|++++.+. . ||.|+.++++|++.|++|||+++|||+|+| |||||++||..|.+++
T Consensus 110 ~AV~~~GGP~i~v~~GR~Da~~s~~~----g-lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~- 183 (264)
T cd08201 110 TSVASCGGPVVPFRAGRIDATEAGQA----G-VPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIV- 183 (264)
T ss_pred HHHHHcCCCeecccccCCCccccccc----c-CCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhc-
Confidence 999999999999999988764 4 999999999999999999999999999995 9999999999987765
Q ss_pred CCCCcCHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCccChHHHHHHHhccc----------ccccccccccCcccHHHH
Q 022375 187 NESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQKG----------LLHSDQILFNGGSTDSLV 256 (298)
Q Consensus 187 ~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~g----------ll~SD~~L~~d~~t~~~V 256 (298)
+|.. . .++..+|| .||.+|||+||.+++.+.. .+.||..++.....+ .+
T Consensus 184 -~~g~----------------~--~~~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~-t~ 242 (264)
T cd08201 184 -PPGS----------------V--PDTVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNV-TM 242 (264)
T ss_pred -CCcc----------------c--cCCCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCccH-HH
Confidence 1110 0 11234787 6999999999999998642 467999998876664 55
Q ss_pred HhhhcChhHHHHHHHHHHHHhhc
Q 022375 257 STYASNSKTFNSDFAAAMIKMGD 279 (298)
Q Consensus 257 ~~~A~~~~~F~~~Fa~Am~Km~~ 279 (298)
+.+| ++..|.+..+..|.||.+
T Consensus 243 ~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 243 NELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred HHhc-ChHHHHHHHHHHHHHHhC
Confidence 6677 789999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.97 E-value=4e-31 Score=245.46 Aligned_cols=197 Identities=19% Similarity=0.275 Sum_probs=155.8
Q ss_pred HHHHHHHHhCcccccchhheeeccccC-------cCCCcc-ccccCCCCCCCcCCCCCCCC--chhhHHHHHHHHhh---
Q 022375 46 SAVQSAVSKERRMGASLLRLHFHDCFV-------NGCDGS-ILLDDTSSFTGEKTSGPNIN--SARGFEVVDDIKSK--- 112 (298)
Q Consensus 46 ~~v~~~~~~d~~~aa~llRL~FHDCfv-------~GCDaS-iLl~~~~~~~~Ek~~~~N~~--~l~gf~~Id~iK~~--- 112 (298)
+.+++.+....-.++.||||+||++.+ +||+|+ |.| .+|++++.|.+ +-+.+.+++.||++
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl------~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~ 90 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRL------APQKDWEVNEPEELAKVLAVLEGIQKEFNE 90 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccC------ccccCcCccCcHHHHHHHHHHHHHHHHhcc
Confidence 356666777777889999999999984 799999 544 46999999996 55688899999875
Q ss_pred ------------------------cCC-----CceeecccccCCCccccccc-CCCCCCCCC------------CCHHHH
Q 022375 113 ------------------------LGG-----PSWNVKLGRRDSKTASLAAA-NSGVIPPPT------------STLSNL 150 (298)
Q Consensus 113 ------------------------~GG-----P~~~v~~GRrD~~~s~~~~~-~~~~LP~p~------------~~~~~l 150 (298)
+|| |.+++..||.|...+..... -..++|.+. ...+.|
T Consensus 91 ~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~L 170 (297)
T cd08200 91 SQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEML 170 (297)
T ss_pred cccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHH
Confidence 677 99999999999987532211 011245432 234789
Q ss_pred HHHHHHCCCChhhhHhhhcCc-cccccccccccccccCCCCcCHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCccChHH
Q 022375 151 INRFQAKGLSAKDMVALSGAH-TIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQY 229 (298)
Q Consensus 151 ~~~F~~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~Tp~~FDn~Y 229 (298)
++.|.++|||++|||||+||| ++|..|-.+ + ..+| +.+|.+|||.|
T Consensus 171 rd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s---------------------------~-----~G~w-T~~p~~f~N~f 217 (297)
T cd08200 171 VDKAQLLTLTAPEMTVLVGGLRVLGANYGGS---------------------------K-----HGVF-TDRPGVLTNDF 217 (297)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCCCC---------------------------C-----CCCC-cCCCCccccHH
Confidence 999999999999999999998 699877321 0 1245 36899999999
Q ss_pred HHHHHhcc--------------------c-----ccccccccccCcccHHHHHhhhcC--hhHHHHHHHHHHHHhhcCC
Q 022375 230 YKHLLNQK--------------------G-----LLHSDQILFNGGSTDSLVSTYASN--SKTFNSDFAAAMIKMGDIS 281 (298)
Q Consensus 230 y~~l~~~~--------------------g-----ll~SD~~L~~d~~t~~~V~~~A~~--~~~F~~~Fa~Am~Km~~ig 281 (298)
|++|+... | .+.+|.+|.+|++.|++|+.||.| +++||++|++||.||.++.
T Consensus 218 F~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~~Klmeld 296 (297)
T cd08200 218 FVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAWTKVMNLD 296 (297)
T ss_pred HHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhcC
Confidence 99999510 1 267899999999999999999998 9999999999999999864
No 15
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.94 E-value=2.5e-26 Score=224.14 Aligned_cols=232 Identities=19% Similarity=0.317 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHhC--------cccccchhheeeccccC-------cCCCccccccCCCCCCCcCCCCCCCCchhhHHHH
Q 022375 42 NTVKSAVQSAVSKE--------RRMGASLLRLHFHDCFV-------NGCDGSILLDDTSSFTGEKTSGPNINSARGFEVV 106 (298)
Q Consensus 42 ~iV~~~v~~~~~~d--------~~~aa~llRL~FHDCfv-------~GCDaSiLl~~~~~~~~Ek~~~~N~~~l~gf~~I 106 (298)
..|+..++..+... ...+|-+|||+||-..+ +|..+. .-++.++.++|.|.++.+++.++
T Consensus 70 ~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G-----~qRFaPlnSWPDN~nLDKarRLL 144 (730)
T COG0376 70 AAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGG-----QQRFAPLNSWPDNANLDKARRLL 144 (730)
T ss_pred HHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCC-----ceecccccCCCcccchHHHHHHh
Confidence 35666777777654 24889999999999874 343332 23567899999999888999999
Q ss_pred HHHHhh---------------------cCCCceeecccccCCCcccc---------------------------------
Q 022375 107 DDIKSK---------------------LGGPSWNVKLGRRDSKTASL--------------------------------- 132 (298)
Q Consensus 107 d~iK~~---------------------~GGP~~~v~~GRrD~~~s~~--------------------------------- 132 (298)
+.||.+ +|++.+.+..||.|--.+..
T Consensus 145 WPIKkKYG~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGL 224 (730)
T COG0376 145 WPIKKKYGRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGL 224 (730)
T ss_pred hhHhHhhcccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeee
Confidence 999998 89999999999999755433
Q ss_pred -----cccCCCCCCCCCCCHHHHHHHHHHCCCChhhhHhhh-cCccccccccccccccccCCCCcCHHHHHHhhccCCCC
Q 022375 133 -----AAANSGVIPPPTSTLSNLINRFQAKGLSAKDMVALS-GAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRA 206 (298)
Q Consensus 133 -----~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHTiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~ 206 (298)
++.+ . .|+|..+..+++..|++|+|+++|.|||+ ||||+|++|...-.+-+..+|.-.+--.+.|.+.-..+
T Consensus 225 IYVNPEGpn-g-~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~vg~ePe~a~ie~qGlGW~~~~g 302 (730)
T COG0376 225 IYVNPEGPN-G-NPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNVGPEPEAAPIEQQGLGWANTYG 302 (730)
T ss_pred EEeCCCCCC-C-CCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhcCCCccccchhhhccccccccC
Confidence 3333 4 89999999999999999999999999999 59999999987644555557776666666676544432
Q ss_pred CCCCCCC-----CCCCCCCCCCccChHHHHHHHhcc-----------------------------------ccccccccc
Q 022375 207 TGSGDNN-----LAPLDFQSPNKFDNQYYKHLLNQK-----------------------------------GLLHSDQIL 246 (298)
Q Consensus 207 ~~~~~~~-----~~~lD~~Tp~~FDn~Yy~~l~~~~-----------------------------------gll~SD~~L 246 (298)
.+++.++ .++| ..||++|||+||.+|+... .||++|.+|
T Consensus 303 ~G~G~dtitsGlE~~W-t~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaL 381 (730)
T COG0376 303 SGKGPDTITSGLEGAW-TTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLAL 381 (730)
T ss_pred CCcCcccccccccccC-CCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccchhh
Confidence 2221222 2456 4799999999999999732 389999999
Q ss_pred ccCcccHHHHHhhhcChhHHHHHHHHHHHHhhcCC
Q 022375 247 FNGGSTDSLVSTYASNSKTFNSDFAAAMIKMGDIS 281 (298)
Q Consensus 247 ~~d~~t~~~V~~~A~~~~~F~~~Fa~Am~Km~~ig 281 (298)
..||..+++.++|.+|++.|.+.|++||.||..-.
T Consensus 382 r~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 382 RFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred hcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999998743
No 16
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.94 E-value=1.1e-26 Score=236.66 Aligned_cols=199 Identities=20% Similarity=0.266 Sum_probs=153.9
Q ss_pred HHHHHHHHHH---HHhCcccccchhheeeccccC-------cCCCcc-ccccCCCCCCCcCCCCCC--CCchhhHHHHHH
Q 022375 42 NTVKSAVQSA---VSKERRMGASLLRLHFHDCFV-------NGCDGS-ILLDDTSSFTGEKTSGPN--INSARGFEVVDD 108 (298)
Q Consensus 42 ~iV~~~v~~~---~~~d~~~aa~llRL~FHDCfv-------~GCDaS-iLl~~~~~~~~Ek~~~~N--~~~l~gf~~Id~ 108 (298)
++|+++|.+. +....-..+.|||++||++.+ +|++|+ |.|. +|++++.| .++.+.+.+++.
T Consensus 428 ~~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~------pe~~w~~N~p~gL~~vl~~Le~ 501 (716)
T TIGR00198 428 TLSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE------PQKNWPVNEPTRLAKVLAVLEK 501 (716)
T ss_pred hhHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc------hhcCcccCCHHHHHHHHHHHHH
Confidence 3456666654 344556779999999999984 799998 6554 59999999 645678899999
Q ss_pred HHhh----------------------c---CCC--ceeecccccCCCcccccccCCCCCC---C------------CCCC
Q 022375 109 IKSK----------------------L---GGP--SWNVKLGRRDSKTASLAAANSGVIP---P------------PTST 146 (298)
Q Consensus 109 iK~~----------------------~---GGP--~~~v~~GRrD~~~s~~~~~~~~~LP---~------------p~~~ 146 (298)
||++ + ||| .+++..||.|...... +++.. +| . ....
T Consensus 502 Ik~~f~~~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~-~~l~p~adgfRn~~~~~~~~~~ 579 (716)
T TIGR00198 502 IQAEFAKGPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESF-TPLEPIADGFRNYLKRDYAVTP 579 (716)
T ss_pred HHHHcCCCcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-Ccccc-ccCCCCCcccchhccccccCCH
Confidence 9985 3 898 5788899999986542 22221 22 1 1223
Q ss_pred HHHHHHHHHHCCCChhhhHhhhcCc-cccccccccccccccCCCCcCHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCcc
Q 022375 147 LSNLINRFQAKGLSAKDMVALSGAH-TIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKF 225 (298)
Q Consensus 147 ~~~l~~~F~~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~Tp~~F 225 (298)
.+.|++.|.++|||++|||||+||| ++|+.|..++ ..+| +.+|.+|
T Consensus 580 ~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~--------------------------------~G~~-T~~p~~f 626 (716)
T TIGR00198 580 EELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSK--------------------------------HGVF-TDRVGVL 626 (716)
T ss_pred HHHHHHHHHhCCCChHHHHheecchhhccccCCCCC--------------------------------CCCC-cCCCCcc
Confidence 5668999999999999999999994 9999984210 1244 3689999
Q ss_pred ChHHHHHHHhcc--------------------c---cc--ccccccccCcccHHHHHhhhcCh--hHHHHHHHHHHHHhh
Q 022375 226 DNQYYKHLLNQK--------------------G---LL--HSDQILFNGGSTDSLVSTYASNS--KTFNSDFAAAMIKMG 278 (298)
Q Consensus 226 Dn~Yy~~l~~~~--------------------g---ll--~SD~~L~~d~~t~~~V~~~A~~~--~~F~~~Fa~Am~Km~ 278 (298)
||.||++|+... | ++ .+|.+|.+|++.|++|+.||.|+ ++|+++|++||.|+.
T Consensus 627 ~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm 706 (716)
T TIGR00198 627 SNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKDFVAAWTKVM 706 (716)
T ss_pred ccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 999999999721 1 22 67999999999999999999997 899999999999999
Q ss_pred cCC
Q 022375 279 DIS 281 (298)
Q Consensus 279 ~ig 281 (298)
+++
T Consensus 707 ~ld 709 (716)
T TIGR00198 707 NLD 709 (716)
T ss_pred hCC
Confidence 986
No 17
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.93 E-value=6e-26 Score=230.33 Aligned_cols=195 Identities=22% Similarity=0.308 Sum_probs=154.6
Q ss_pred HHHHHHHhCcccccchhheeeccccC-------cCCCcc-ccccCCCCCCCcCCCCCCC--CchhhHHHHHHHHhh----
Q 022375 47 AVQSAVSKERRMGASLLRLHFHDCFV-------NGCDGS-ILLDDTSSFTGEKTSGPNI--NSARGFEVVDDIKSK---- 112 (298)
Q Consensus 47 ~v~~~~~~d~~~aa~llRL~FHDCfv-------~GCDaS-iLl~~~~~~~~Ek~~~~N~--~~l~gf~~Id~iK~~---- 112 (298)
.+++.+....-..+.|||++||++.+ +|++|+ |.|. +|+++..|. ++.+.+++++.||++
T Consensus 443 ~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~------Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~ 516 (726)
T PRK15061 443 ALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNEPAQLAKVLAVLEGIQAEFNAA 516 (726)
T ss_pred HHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc------cccCccccCHHHHHHHHHHHHHHHHHHhhc
Confidence 56666666677789999999999974 799998 7664 599999998 455678899999875
Q ss_pred -----------------------c---CC--CceeecccccCCCcccccccCC--CCCCCCC------------CCHHHH
Q 022375 113 -----------------------L---GG--PSWNVKLGRRDSKTASLAAANS--GVIPPPT------------STLSNL 150 (298)
Q Consensus 113 -----------------------~---GG--P~~~v~~GRrD~~~s~~~~~~~--~~LP~p~------------~~~~~l 150 (298)
+ || |.+++..||.|...... +++. .++|... ...+.|
T Consensus 517 ~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~L 595 (726)
T PRK15061 517 QSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEELL 595 (726)
T ss_pred cCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHHH
Confidence 2 67 89999999999987532 2211 1266543 124789
Q ss_pred HHHHHHCCCChhhhHhhhcCc-cccccccccccccccCCCCcCHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCccChHH
Q 022375 151 INRFQAKGLSAKDMVALSGAH-TIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQY 229 (298)
Q Consensus 151 ~~~F~~~Gl~~~dlVaLsGaH-TiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~Tp~~FDn~Y 229 (298)
++.|.++|||+.|||||+||| ++|..|-.++ ..+| +.+|.+|||.|
T Consensus 596 ~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~--------------------------------~G~~-T~~p~~fsNdf 642 (726)
T PRK15061 596 VDKAQLLTLTAPEMTVLVGGLRVLGANYGGSK--------------------------------HGVF-TDRPGVLTNDF 642 (726)
T ss_pred HHHHHhCCCChHHHhheecchhhcccCCCCCC--------------------------------CCCC-cCCCCccccHH
Confidence 999999999999999999997 7888873210 1134 35899999999
Q ss_pred HHHHHhc----------c----------c---c--cccccccccCcccHHHHHhhhcC--hhHHHHHHHHHHHHhhcCC
Q 022375 230 YKHLLNQ----------K----------G---L--LHSDQILFNGGSTDSLVSTYASN--SKTFNSDFAAAMIKMGDIS 281 (298)
Q Consensus 230 y~~l~~~----------~----------g---l--l~SD~~L~~d~~t~~~V~~~A~~--~~~F~~~Fa~Am~Km~~ig 281 (298)
|+||+.. . | + +.+|.+|.+|++.|++|+.||.| +++|+++|++||.|+.+++
T Consensus 643 FvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw~Kvmeld 721 (726)
T PRK15061 643 FVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAWTKVMNLD 721 (726)
T ss_pred HHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCC
Confidence 9999951 1 1 1 46899999999999999999998 9999999999999999986
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=97.75 E-value=0.00016 Score=72.48 Aligned_cols=196 Identities=22% Similarity=0.310 Sum_probs=121.0
Q ss_pred HHHHHHHhCcccccchhheeeccccC-------cCCCcc-ccccCCCCCCCcCCCCCCCC--chhhHHHHHHHHhh----
Q 022375 47 AVQSAVSKERRMGASLLRLHFHDCFV-------NGCDGS-ILLDDTSSFTGEKTSGPNIN--SARGFEVVDDIKSK---- 112 (298)
Q Consensus 47 ~v~~~~~~d~~~aa~llRL~FHDCfv-------~GCDaS-iLl~~~~~~~~Ek~~~~N~~--~l~gf~~Id~iK~~---- 112 (298)
.+++.+....-....|+-.+|-.+-+ +|.+|. |.|. +.|++..|.. .-+-+.+++.|.+.
T Consensus 453 ~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa------PqkdWevN~P~~l~kvl~~le~iq~~fnkk 526 (730)
T COG0376 453 ALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA------PQKDWEVNQPAELAKVLAVLEKIQKEFNKK 526 (730)
T ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec------ccccCCCCCHHHHHHHHHHHHHHHHHhcCc
Confidence 34555555555556677777766643 455543 4454 4688888852 12345666666654
Q ss_pred --------------------cCCCce--eecccccCCCcccccccC-CCCCCC-----------CCCC-HHHHHHHHHHC
Q 022375 113 --------------------LGGPSW--NVKLGRRDSKTASLAAAN-SGVIPP-----------PTST-LSNLINRFQAK 157 (298)
Q Consensus 113 --------------------~GGP~~--~v~~GRrD~~~s~~~~~~-~~~LP~-----------p~~~-~~~l~~~F~~~ 157 (298)
..|-.+ ++..||.|.......... .-+-|- ...+ -+-|++.=+-.
T Consensus 527 vSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL 606 (730)
T COG0376 527 VSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQLL 606 (730)
T ss_pred cchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHHHHh
Confidence 344444 555999998754221100 000111 1112 33467777789
Q ss_pred CCChhhhHhhhcCcc-ccccccccccccccCCCCcCHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCccChHHHHHHHhc
Q 022375 158 GLSAKDMVALSGAHT-IGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSGDNNLAPLDFQSPNKFDNQYYKHLLNQ 236 (298)
Q Consensus 158 Gl~~~dlVaLsGaHT-iG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~ 236 (298)
+||.-||++|.|+-- +|.-+. + . ....+ +..|..+.|.||.||+.-
T Consensus 607 ~LtapemtVLiGGlRvLg~n~g-----------------------------~--s-~~GVf-T~~pg~LtndFFvnLlDM 653 (730)
T COG0376 607 TLTAPEMTVLIGGLRVLGANYG-----------------------------G--S-KHGVF-TDRPGVLTNDFFVNLLDM 653 (730)
T ss_pred ccCCccceEEEcceEeeccCCC-----------------------------C--C-cccee-ccCcccccchhhhhhhhc
Confidence 999999999998752 233221 1 0 01112 246788889999999862
Q ss_pred ----------c----------c-----ccccccccccCcccHHHHHhhhcC--hhHHHHHHHHHHHHhhcCC
Q 022375 237 ----------K----------G-----LLHSDQILFNGGSTDSLVSTYASN--SKTFNSDFAAAMIKMGDIS 281 (298)
Q Consensus 237 ----------~----------g-----ll~SD~~L~~d~~t~~~V~~~A~~--~~~F~~~Fa~Am~Km~~ig 281 (298)
+ | --..|..+-+++..|.+.+-||.+ ++.|.++|.+||.|..++.
T Consensus 654 ~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kVMn~D 725 (730)
T COG0376 654 GTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKVMNLD 725 (730)
T ss_pred cceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccc
Confidence 1 1 123566677888899999999975 7899999999999988764
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=86.76 E-value=6.4 Score=38.16 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=39.0
Q ss_pred cCCCceeecccccCCCcccccccCCCCCCC---CCCCHHHHHHHHHHCCC----------ChhhhHhhhcCccc
Q 022375 113 LGGPSWNVKLGRRDSKTASLAAANSGVIPP---PTSTLSNLINRFQAKGL----------SAKDMVALSGAHTI 173 (298)
Q Consensus 113 ~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~---p~~~~~~l~~~F~~~Gl----------~~~dlVaLsGaHTi 173 (298)
+|-..+..+.||.|...-.+...... .+. .-..+.++.+.|++.|+ |.+|+..|.|+|.+
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~-~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~l 252 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESY-VGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDKL 252 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccc-cccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCEE
Confidence 78888999999997643222111111 111 12357788889988886 46788888888755
No 20
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=77.88 E-value=25 Score=33.90 Aligned_cols=142 Identities=11% Similarity=0.233 Sum_probs=75.4
Q ss_pred hhhHHHHHHHHhh--------------------cCCCceeecccccCCCcccccccC---CCCCCCCCCCHHHHHHHHHH
Q 022375 100 ARGFEVVDDIKSK--------------------LGGPSWNVKLGRRDSKTASLAAAN---SGVIPPPTSTLSNLINRFQA 156 (298)
Q Consensus 100 l~gf~~Id~iK~~--------------------~GGP~~~v~~GRrD~~~s~~~~~~---~~~LP~p~~~~~~l~~~F~~ 156 (298)
..|+.++...++. +|-..+..+.||.|.-.-...... .. .-+.-..+.++.+.|++
T Consensus 135 ~eGi~A~~~L~~~GI~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~-~d~Gv~~v~~i~~~~k~ 213 (317)
T TIGR00874 135 WEGIRAAEELEKEGIHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGKKEYSIE-EDPGVASVKKIYNYYKK 213 (317)
T ss_pred HHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCccccccc-cCchHHHHHHHHHHHHH
Confidence 3577777666554 788899999999976321111000 00 11233467888889999
Q ss_pred CCC----------ChhhhHhhhcCccccccccccccccccCCCCcCHHHHHHhhccCCCCCCCC-CCCCCCCCCCCCCcc
Q 022375 157 KGL----------SAKDMVALSGAHTIGQARCVAFRNRIYNESNIESSFAKNRRGNCPRATGSG-DNNLAPLDFQSPNKF 225 (298)
Q Consensus 157 ~Gl----------~~~dlVaLsGaHTiG~~hc~~f~~Rl~~dp~~d~~~~~~L~~~Cp~~~~~~-~~~~~~lD~~Tp~~F 225 (298)
.|+ |.+|+..|.|+|.+ ++.|....+|...-..-...- .......+ ..|..+
T Consensus 214 ~g~~T~Im~ASfRn~~qv~~laG~d~~----------------Ti~p~ll~~L~~~~~~~~~~l~~~~~~~~~-~~~~~~ 276 (317)
T TIGR00874 214 HGYPTEVMGASFRNKEEILALAGCDRL----------------TISPALLDELKESTGPVERKLDPESAKKVD-KQPIIL 276 (317)
T ss_pred cCCCcEEEeeccCCHHHHHHHHCCCeE----------------eCCHHHHHHHHhCCCCcCccCCcccccccc-ccCCCC
Confidence 886 46777777787754 245556666644221110000 00000111 234567
Q ss_pred ChHHHHHHHhcccccccccccccCcccHHHHHhhhcChhHHH
Q 022375 226 DNQYYKHLLNQKGLLHSDQILFNGGSTDSLVSTYASNSKTFN 267 (298)
Q Consensus 226 Dn~Yy~~l~~~~gll~SD~~L~~d~~t~~~V~~~A~~~~~F~ 267 (298)
|...|+-.++..++ .. ....+-++.|+.|+....
T Consensus 277 ~e~~fr~~~~~d~m-------a~-ekl~~gir~F~~d~~~Le 310 (317)
T TIGR00874 277 DESEFRFLHNEDAM-------AT-EKLAEGIRKFAADQEKLE 310 (317)
T ss_pred CHHHHHHHhCCCcc-------hH-HHHHHHHHHHHHHHHHHH
Confidence 88888754443221 11 122455666766665443
No 21
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=68.28 E-value=38 Score=32.53 Aligned_cols=72 Identities=13% Similarity=0.213 Sum_probs=45.2
Q ss_pred hhhHHHHHHHHhh--------------------cCCCceeecccccCCCcccccccCCCCCCC----CCCCHHHHHHHHH
Q 022375 100 ARGFEVVDDIKSK--------------------LGGPSWNVKLGRRDSKTASLAAANSGVIPP----PTSTLSNLINRFQ 155 (298)
Q Consensus 100 l~gf~~Id~iK~~--------------------~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~----p~~~~~~l~~~F~ 155 (298)
..|+.++...++. +|-..+..+.||.|...-...... . .+. .-..+.++.+.|+
T Consensus 135 ~eGi~A~~~L~~~GI~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~-~-~~~~~d~Gv~~v~~i~~~~~ 212 (313)
T cd00957 135 WEGIQAAKQLEKEGIHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDK-A-YTAEEDPGVASVKKIYNYYK 212 (313)
T ss_pred HHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccc-c-CCccCCcHHHHHHHHHHHHH
Confidence 3577777666654 788889999999986422111100 0 111 2235788888999
Q ss_pred HCCCC----------hhhhHhhhcCccc
Q 022375 156 AKGLS----------AKDMVALSGAHTI 173 (298)
Q Consensus 156 ~~Gl~----------~~dlVaLsGaHTi 173 (298)
+.|+. ..|+..|.|+|.+
T Consensus 213 ~~~~~T~vmaASfRn~~~v~~laG~d~~ 240 (313)
T cd00957 213 KFGYKTKVMGASFRNIGQILALAGCDYL 240 (313)
T ss_pred HcCCCcEEEecccCCHHHHHHHhCCCeE
Confidence 98874 5677777777643
No 22
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=66.89 E-value=1.1e+02 Score=30.29 Aligned_cols=59 Identities=14% Similarity=0.240 Sum_probs=38.2
Q ss_pred cCCCceeecccccCCCcccccccCCCCCCCCC----CCHHHHHHHHHHCCC----------ChhhhHhhhcCccc
Q 022375 113 LGGPSWNVKLGRRDSKTASLAAANSGVIPPPT----STLSNLINRFQAKGL----------SAKDMVALSGAHTI 173 (298)
Q Consensus 113 ~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~p~----~~~~~l~~~F~~~Gl----------~~~dlVaLsGaHTi 173 (298)
+|-..+..+.||.|.-.-.....+ . +|... ..+.++.+.|++.|+ +.+++..|.|+|.+
T Consensus 174 AGa~~ISPfVgRi~dw~~~~~g~~-~-~~~~~dpGv~~v~~i~~~~~~~~~~T~Im~ASfRn~~~v~~laG~d~~ 246 (391)
T PRK12309 174 AGVTLISPFVGRILDWYKKETGRD-S-YPGAEDPGVQSVTQIYNYYKKFGYKTEVMGASFRNIGEIIELAGCDLL 246 (391)
T ss_pred cCCCEEEeecchhhhhhhhccCCC-c-cccccchHHHHHHHHHHHHHhcCCCcEEEecccCCHHHHHHHHCCCee
Confidence 788899999999987322111111 1 33222 247888889988876 45777778787754
No 23
>PRK12346 transaldolase A; Provisional
Probab=64.69 E-value=62 Score=31.19 Aligned_cols=72 Identities=11% Similarity=0.186 Sum_probs=47.6
Q ss_pred hhhHHHHHHHHhh--------------------cCCCceeecccccCCCcccccccCCCCCCC----CCCCHHHHHHHHH
Q 022375 100 ARGFEVVDDIKSK--------------------LGGPSWNVKLGRRDSKTASLAAANSGVIPP----PTSTLSNLINRFQ 155 (298)
Q Consensus 100 l~gf~~Id~iK~~--------------------~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~----p~~~~~~l~~~F~ 155 (298)
..|++++...++. +|-..+..+.||.|.-....... .. ++. .-..+.++.+.|+
T Consensus 136 ~eGi~A~~~L~~~GI~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~-~~-~~~~~~~Gv~~v~~i~~~~k 213 (316)
T PRK12346 136 WEGIRAAEELEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPM-DP-YVVEEDPGVKSVRNIYDYYK 213 (316)
T ss_pred HHHHHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhcccc-cc-ccccCCChHHHHHHHHHHHH
Confidence 4677777776654 78889999999998743221110 01 211 2235778888998
Q ss_pred HCCC----------ChhhhHhhhcCccc
Q 022375 156 AKGL----------SAKDMVALSGAHTI 173 (298)
Q Consensus 156 ~~Gl----------~~~dlVaLsGaHTi 173 (298)
+.|+ |.+|+.+|.|+|.+
T Consensus 214 ~~~~~T~Vm~ASfRn~~qi~alaG~d~l 241 (316)
T PRK12346 214 QHRYETIVMGASFRRTEQILALAGCDRL 241 (316)
T ss_pred HcCCCcEEEecccCCHHHHHHHhCCCEE
Confidence 8885 46788888888754
No 24
>PRK05269 transaldolase B; Provisional
Probab=61.44 E-value=1e+02 Score=29.63 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=37.5
Q ss_pred cCCCceeecccccCCCcccccccCCC--CCCCCCCCHHHHHHHHHHCCCC----------hhhhHhhhcCccc
Q 022375 113 LGGPSWNVKLGRRDSKTASLAAANSG--VIPPPTSTLSNLINRFQAKGLS----------AKDMVALSGAHTI 173 (298)
Q Consensus 113 ~GGP~~~v~~GRrD~~~s~~~~~~~~--~LP~p~~~~~~l~~~F~~~Gl~----------~~dlVaLsGaHTi 173 (298)
+|-..+..+.||.|...-........ ---+.-..+.++.+.|++.|+. ..++..|.|+|++
T Consensus 170 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~im~ASfrn~~~v~~laG~d~v 242 (318)
T PRK05269 170 AGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTVVMGASFRNTGQILELAGCDRL 242 (318)
T ss_pred cCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCceEEeeccCCHHHHHHHhCCCeE
Confidence 78888999999998642211110000 0111234688888899998874 5666667777654
No 25
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=54.85 E-value=11 Score=29.06 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 022375 265 TFNSDFAAAMIKMGDISP 282 (298)
Q Consensus 265 ~F~~~Fa~Am~Km~~igv 282 (298)
.....|..||.||+.+|-
T Consensus 2 ~m~~~F~~am~KlavLG~ 19 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGH 19 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 356789999999999885
No 26
>PLN02161 beta-amylase
Probab=35.98 E-value=52 Score=33.82 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=23.3
Q ss_pred HHHhhhcChhHHHHHHHHHHHHhh-----cCCCCCCCCCcccc
Q 022375 255 LVSTYASNSKTFNSDFAAAMIKMG-----DISPLTGSIGEIRK 292 (298)
Q Consensus 255 ~V~~~A~~~~~F~~~Fa~Am~Km~-----~igv~tg~~GeiR~ 292 (298)
-++.|. .|.+.|...|.-+- +|.|--|..||.|-
T Consensus 234 plq~Y~----Dfm~SFr~~F~~~~~~~I~eI~VGlGP~GELRY 272 (531)
T PLN02161 234 AVQCYE----DFMLSFSTKFEPYIGNVIEEISIGLGPSGELRY 272 (531)
T ss_pred HHHHHH----HHHHHHHHHHHHHhcCceEEEEeccccCccccC
Confidence 455564 36666666666653 67777789999995
No 27
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=32.67 E-value=77 Score=29.36 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHhh--------------------cCCCceeecccccCCCcccccccCCCCCCCCC--C---CHHHHHHHH
Q 022375 100 ARGFEVVDDIKSK--------------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPT--S---TLSNLINRF 154 (298)
Q Consensus 100 l~gf~~Id~iK~~--------------------~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~p~--~---~~~~l~~~F 154 (298)
-.|+++|...++. +|-.++.++.||.|...-...... -+++. . .+.++.+.|
T Consensus 126 ~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa~~aa~Aga~~ispfvgRid~~~~~~~~~~---~~d~~~~~gi~~~~~~~~~~ 202 (252)
T cd00439 126 AEGIPAIKDLIAAGISVNVTLIFSIAQYEAVADAGTSVASPFVSRIDTLMDKMLEQI---GLDLRGKAGVAQVTLAYKLY 202 (252)
T ss_pred HHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEEeccHHHHHhhhhcccc---ccccccCcHHHHHHHHHHHH
Confidence 3688888777765 788889999999998654222211 11111 2 345677777
Q ss_pred HHCCCC----------hhhhHhhhcCcc
Q 022375 155 QAKGLS----------AKDMVALSGAHT 172 (298)
Q Consensus 155 ~~~Gl~----------~~dlVaLsGaHT 172 (298)
...|.. .+++..|.|+|+
T Consensus 203 ~~~~~~tkiL~AS~r~~~~v~~l~G~d~ 230 (252)
T cd00439 203 KQKFKKQRVLWASFSDTLYVAPLIGCDT 230 (252)
T ss_pred HHhCCCCeEEEEeeCCHHHHHHhhCCCe
Confidence 777764 445555555554
No 28
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=31.50 E-value=94 Score=27.91 Aligned_cols=62 Identities=18% Similarity=0.362 Sum_probs=42.4
Q ss_pred hhHHHHHHHHhh--------------------cCCCceeecccccCCCcccccccCCCCCCCCCCCHHHHHHHHHHCCCC
Q 022375 101 RGFEVVDDIKSK--------------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGLS 160 (298)
Q Consensus 101 ~gf~~Id~iK~~--------------------~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~p~~~~~~l~~~F~~~Gl~ 160 (298)
.|+++|...++. +|-.++..++||.|...- ++..-+.++.+.+.+.|+.
T Consensus 89 ~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~~g~-----------dg~~~i~~i~~~~~~~~~~ 157 (211)
T cd00956 89 DGLKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDDLGG-----------DGMELIREIRTIFDNYGFD 157 (211)
T ss_pred hHHHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEEecChHhhcCC-----------CHHHHHHHHHHHHHHcCCC
Confidence 577777777665 677777888999887422 1223467888899888865
Q ss_pred ----------hhhhHh--hhcCccc
Q 022375 161 ----------AKDMVA--LSGAHTI 173 (298)
Q Consensus 161 ----------~~dlVa--LsGaHTi 173 (298)
.+|++. ++|+|.+
T Consensus 158 tkil~As~r~~~ei~~a~~~Gad~v 182 (211)
T cd00956 158 TKILAASIRNPQHVIEAALAGADAI 182 (211)
T ss_pred ceEEecccCCHHHHHHHHHcCCCEE
Confidence 566554 5677754
No 29
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=29.13 E-value=44 Score=28.24 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=18.7
Q ss_pred cCcccccCCChhHHHHHHHHHHHHHHhCcccccchhheeeccc
Q 022375 28 LSTNFYSKTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFHDC 70 (298)
Q Consensus 28 L~~~fY~~sCP~~e~iV~~~v~~~~~~d~~~aa~llRL~FHDC 70 (298)
...++|-++|-+. -.|.=.|-+|||=
T Consensus 134 ~Dn~~Yvk~C~~g-----------------rsPk~TrWwfHDD 159 (161)
T KOG0427|consen 134 TDNDRYVKNCKNG-----------------RSPKETRWWFHDD 159 (161)
T ss_pred CccchhhhhccCC-----------------CCcccceeeeccC
Confidence 5678999999754 2344568999983
No 30
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins []. This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
Probab=29.07 E-value=18 Score=28.87 Aligned_cols=14 Identities=50% Similarity=1.452 Sum_probs=9.5
Q ss_pred eeccccCcCCCcccc
Q 022375 66 HFHDCFVNGCDGSIL 80 (298)
Q Consensus 66 ~FHDCfv~GCDaSiL 80 (298)
.+|+|| +||.|+..
T Consensus 4 V~HeC~-g~c~G~f~ 17 (96)
T PF08782_consen 4 VYHECF-GGCRGSFI 17 (96)
T ss_dssp EEE-ST-T-EEEEE-
T ss_pred eEEeec-CccceEec
Confidence 589998 68999985
No 31
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.73 E-value=1.2e+02 Score=22.93 Aligned_cols=28 Identities=4% Similarity=0.267 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhCcccccchhheeeccc
Q 022375 43 TVKSAVQSAVSKERRMGASLLRLHFHDC 70 (298)
Q Consensus 43 iV~~~v~~~~~~d~~~aa~llRL~FHDC 70 (298)
|.|+.+++.++++|.+-...||+-+---
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~~qm 51 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMMAQM 51 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 8999999999999999999999987644
No 32
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=27.62 E-value=75 Score=29.02 Aligned_cols=52 Identities=12% Similarity=0.235 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHhh--------------------cCCCceeecccccCCCcccccccCCCCCCCCCCCHHHHHHHHHHCCC
Q 022375 100 ARGFEVVDDIKSK--------------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGL 159 (298)
Q Consensus 100 l~gf~~Id~iK~~--------------------~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~p~~~~~~l~~~F~~~Gl 159 (298)
..|+++|...++. +|--++..+.||.|...-++ ..-+.++...|.+.|+
T Consensus 92 ~~Gl~Ai~~L~~~Gi~vn~T~ifs~~Qa~~Aa~aGa~yvsPyvgRi~d~g~D~-----------~~~i~~i~~~~~~~~~ 160 (222)
T PRK12656 92 PAGLAAIKTLKAEGYHITATAIYTVFQGLLAIEAGADYLAPYYNRMENLNIDS-----------NAVIGQLAEAIDRENS 160 (222)
T ss_pred HHHHHHHHHHHHCCCceEEeeeCCHHHHHHHHHCCCCEEecccchhhhcCCCH-----------HHHHHHHHHHHHhcCC
Confidence 3578888777765 77778889999998642211 1246778888988887
Q ss_pred Chh
Q 022375 160 SAK 162 (298)
Q Consensus 160 ~~~ 162 (298)
+.+
T Consensus 161 ~tk 163 (222)
T PRK12656 161 DSK 163 (222)
T ss_pred CCE
Confidence 643
No 33
>PRK01362 putative translaldolase; Provisional
Probab=25.73 E-value=74 Score=28.81 Aligned_cols=51 Identities=14% Similarity=0.280 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHhh--------------------cCCCceeecccccCCCcccccccCCCCCCCCCCCHHHHHHHHHHCCC
Q 022375 100 ARGFEVVDDIKSK--------------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKGL 159 (298)
Q Consensus 100 l~gf~~Id~iK~~--------------------~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~p~~~~~~l~~~F~~~Gl 159 (298)
..|+++|...++. +|--++..+.||.|...- ++..-+.++.+.+.+.|+
T Consensus 88 ~~G~~a~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~-----------dg~~~i~~~~~~~~~~~~ 156 (214)
T PRK01362 88 PEGLKAVKALSKEGIKTNVTLIFSANQALLAAKAGATYVSPFVGRLDDIGT-----------DGMELIEDIREIYDNYGF 156 (214)
T ss_pred HHHHHHHHHHHHCCCceEEeeecCHHHHHHHHhcCCcEEEeecchHhhcCC-----------CHHHHHHHHHHHHHHcCC
Confidence 3688888777765 666678899999986421 223357788888988886
Q ss_pred Ch
Q 022375 160 SA 161 (298)
Q Consensus 160 ~~ 161 (298)
+.
T Consensus 157 ~t 158 (214)
T PRK01362 157 DT 158 (214)
T ss_pred Cc
Confidence 54
No 34
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=25.59 E-value=58 Score=29.29 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=18.9
Q ss_pred CCChhHHHHHHHHHHHHHHhCcccccchhheeec
Q 022375 35 KTCPKLLNTVKSAVQSAVSKERRMGASLLRLHFH 68 (298)
Q Consensus 35 ~sCP~~e~iV~~~v~~~~~~d~~~aa~llRL~FH 68 (298)
+|||.|+..+.+...+ +.+|=|.||
T Consensus 11 sSCPpAD~~L~~l~~~---------~~Vi~LafH 35 (202)
T PF06764_consen 11 SSCPPADRLLSELAAR---------PDVIALAFH 35 (202)
T ss_dssp TT-HHHHHHHHHHHHH---------TSSEEEEEE
T ss_pred CCCcHHHHHHHHhhcC---------CCEEEEEec
Confidence 5899999888766655 477779999
No 35
>PLN00197 beta-amylase; Provisional
Probab=23.99 E-value=1e+02 Score=31.97 Aligned_cols=34 Identities=29% Similarity=0.419 Sum_probs=23.0
Q ss_pred HHHhhhcChhHHHHHHHHHHHHh-----hcCCCCCCCCCcccc
Q 022375 255 LVSTYASNSKTFNSDFAAAMIKM-----GDISPLTGSIGEIRK 292 (298)
Q Consensus 255 ~V~~~A~~~~~F~~~Fa~Am~Km-----~~igv~tg~~GeiR~ 292 (298)
-|+.|. .|.+.|...|.-+ .+|.|--|..||.|-
T Consensus 244 piq~Y~----DFM~SFr~~F~~~l~~~I~eI~VGlGP~GELRY 282 (573)
T PLN00197 244 PVQCYA----DFMRAFRDNFKHLLGDTIVEIQVGMGPAGELRY 282 (573)
T ss_pred HHHHHH----HHHHHHHHHHHHHhcCceeEEEeccCcCccccC
Confidence 346664 3666676666664 456667789999995
No 36
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=23.96 E-value=1.4e+02 Score=27.17 Aligned_cols=53 Identities=13% Similarity=0.215 Sum_probs=37.4
Q ss_pred chhhHHHHHHHHhh--------------------cCCCceeecccccCCCcccccccCCCCCCCCCCCHHHHHHHHHHCC
Q 022375 99 SARGFEVVDDIKSK--------------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKG 158 (298)
Q Consensus 99 ~l~gf~~Id~iK~~--------------------~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~p~~~~~~l~~~F~~~G 158 (298)
+..|+++|...++. +|.-++..++||.|...- ++..-+.++.+.+...|
T Consensus 89 T~~Gl~Ai~~L~~~GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~~~g~-----------dg~~~i~~~~~~~~~~~ 157 (220)
T PRK12655 89 TAEGLAAIKKLKKEGIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQGG-----------DGIRMVQELQTLLEMHA 157 (220)
T ss_pred CHHHHHHHHHHHHCCCceeEeEecCHHHHHHHHHcCCeEEEeecchHhHcCC-----------CHHHHHHHHHHHHHhcC
Confidence 34678888777765 787788999999985321 12334678888888888
Q ss_pred CChh
Q 022375 159 LSAK 162 (298)
Q Consensus 159 l~~~ 162 (298)
+..+
T Consensus 158 ~~tk 161 (220)
T PRK12655 158 PESM 161 (220)
T ss_pred CCcE
Confidence 7654
No 37
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=23.31 E-value=82 Score=28.46 Aligned_cols=53 Identities=15% Similarity=0.241 Sum_probs=37.2
Q ss_pred chhhHHHHHHHHhh--------------------cCCCceeecccccCCCcccccccCCCCCCCCCCCHHHHHHHHHHCC
Q 022375 99 SARGFEVVDDIKSK--------------------LGGPSWNVKLGRRDSKTASLAAANSGVIPPPTSTLSNLINRFQAKG 158 (298)
Q Consensus 99 ~l~gf~~Id~iK~~--------------------~GGP~~~v~~GRrD~~~s~~~~~~~~~LP~p~~~~~~l~~~F~~~G 158 (298)
+..|+++|...++. +|--++..+.||.|...- ++..-+.++.+.+...|
T Consensus 87 T~~Gl~A~~~L~~~Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d~g~-----------dg~~~v~~~~~~~~~~~ 155 (213)
T TIGR00875 87 TSEGLKAVKILKKEGIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDDIGG-----------DGMKLIEEVKTIFENHA 155 (213)
T ss_pred CHHHHHHHHHHHHCCCceeEEEecCHHHHHHHHHcCCCEEEeecchHHHcCC-----------CHHHHHHHHHHHHHHcC
Confidence 34678888777765 676678889999987421 12334678888888888
Q ss_pred CChh
Q 022375 159 LSAK 162 (298)
Q Consensus 159 l~~~ 162 (298)
++.+
T Consensus 156 ~~tk 159 (213)
T TIGR00875 156 PDTE 159 (213)
T ss_pred CCCE
Confidence 7654
No 38
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=21.65 E-value=54 Score=25.60 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=16.6
Q ss_pred hhhcChhHHHHHHHHHHHHhh
Q 022375 258 TYASNSKTFNSDFAAAMIKMG 278 (298)
Q Consensus 258 ~~A~~~~~F~~~Fa~Am~Km~ 278 (298)
.|-..|++||+.|+..+.|=+
T Consensus 37 rY~~~QskFFe~~A~~~tkR~ 57 (90)
T PLN00017 37 RYNPLQSKFFETFAAPFTKRG 57 (90)
T ss_pred CCChHHHHHHHHHhhhhhHHH
Confidence 377789999999998776643
No 39
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=20.73 E-value=77 Score=24.33 Aligned_cols=26 Identities=35% Similarity=0.374 Sum_probs=18.9
Q ss_pred HHHHHHHHHHCCCChhhhHhhhcCcc
Q 022375 147 LSNLINRFQAKGLSAKDMVALSGAHT 172 (298)
Q Consensus 147 ~~~l~~~F~~~Gl~~~dlVaLsGaHT 172 (298)
-+.|-..|.+.||+..||-.|+-+.-
T Consensus 10 GDtLs~iF~~~gls~~dl~~v~~~~~ 35 (85)
T PF04225_consen 10 GDTLSTIFRRAGLSASDLYAVLEADG 35 (85)
T ss_dssp T--HHHHHHHTT--HHHHHHHHHHGG
T ss_pred CCcHHHHHHHcCCCHHHHHHHHhccC
Confidence 35688999999999999999997653
Done!