Query 022376
Match_columns 298
No_of_seqs 170 out of 717
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 04:28:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022376.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/022376hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xhba2 c.68.1.17 (A:95-422) P 18.8 20 0.0015 29.3 1.7 22 6-28 224-245 (328)
2 d2axtm1 f.23.35.1 (M:1-36) Pho 11.4 1E+02 0.0075 17.2 2.8 16 92-107 8-23 (36)
3 d2r6gf1 e.70.1.1 (F:13-260) Ma 9.7 3.9E+02 0.029 21.0 9.1 25 269-293 47-71 (248)
4 d2cxaa1 d.108.1.6 (A:1-232) Le 7.9 80 0.0059 25.3 2.0 17 5-21 112-128 (232)
5 d3bula2 c.23.6.1 (A:741-896) M 7.1 93 0.0068 23.0 2.0 29 12-47 27-55 (156)
6 d2gnoa1 a.80.1.1 (A:209-306) g 6.8 64 0.0047 21.5 0.7 14 10-24 47-60 (98)
7 d1o6ba_ c.26.1.3 (A:) Phosphop 6.0 76 0.0055 22.4 0.8 17 34-50 142-158 (163)
8 d1a9xa4 c.30.1.1 (A:556-676) C 5.7 2.2E+02 0.016 20.1 3.4 18 15-32 33-50 (121)
9 d2fkia1 d.198.3.1 (A:1-118) Hy 5.6 23 0.0017 25.2 -2.5 22 8-30 66-87 (118)
10 d1a9xa3 c.30.1.1 (A:1-127) Car 5.2 2E+02 0.015 20.5 2.9 17 16-32 37-53 (127)
No 1
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.81 E-value=20 Score=29.34 Aligned_cols=22 Identities=14% Similarity=0.030 Sum_probs=19.9
Q ss_pred cchHHHhHHHHHHCCCeEEecCC
Q 022376 6 VEDYFTGFKQLHCKGWRSVYLNP 28 (298)
Q Consensus 6 TED~~Tg~~~Lh~~Gwrs~Y~~~ 28 (298)
.||..-++| ++.+||+..|++.
T Consensus 224 ~ED~Dl~~R-~~~~G~~i~~~p~ 245 (328)
T d1xhba2 224 GENLEISFR-IWQCGGTLEIVTC 245 (328)
T ss_dssp CCCSHHHHH-HHHTTCEEEEEEE
T ss_pred chHHHHHHH-HHHhCCeEEEeCC
Confidence 399999999 9999999999854
No 2
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.42 E-value=1e+02 Score=17.17 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 022376 92 CLPLWCFATVPQLCLL 107 (298)
Q Consensus 92 sl~~l~y~l~P~l~ll 107 (298)
-+....|+++|..+|+
T Consensus 8 ~iAt~LFilvPt~FLl 23 (36)
T d2axtm1 8 LIATALFVLVPSVFLI 23 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445566666666655
No 3
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=9.71 E-value=3.9e+02 Score=20.96 Aligned_cols=25 Identities=8% Similarity=0.018 Sum_probs=21.8
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHhh
Q 022376 269 DNGRIPPSVTLSSALLSGIFLPLVS 293 (298)
Q Consensus 269 ~~~~~P~~~~~~s~~~~~~~~~~~~ 293 (298)
+|+..|...++..+++-++|.+++.
T Consensus 47 s~r~~p~kyi~PG~~~l~~Fvi~Pi 71 (248)
T d2r6gf1 47 NRKAYAWRYVYPGMAGMGLFVLFPL 71 (248)
T ss_dssp SSCCTTHHHHHHHHHHHHHHTHHHH
T ss_pred ccCccceehhhhHHHHHHHHHHHhh
Confidence 5678999999999999999988873
No 4
>d2cxaa1 d.108.1.6 (A:1-232) Leucyl/phenylalanyl-tRNA-protein transferase, LFTR (Aat) {Escherichia coli [TaxId: 562]}
Probab=7.86 E-value=80 Score=25.34 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=15.2
Q ss_pred ccchHHHhHHHHHHCCC
Q 022376 5 LVEDYFTGFKQLHCKGW 21 (298)
Q Consensus 5 iTED~~Tg~~~Lh~~Gw 21 (298)
|+||+..++.+||..||
T Consensus 112 I~~~ii~aY~~Lh~~G~ 128 (232)
T d2cxaa1 112 ITRGVVEAYHRLHELGH 128 (232)
T ss_dssp CCHHHHHHHHHHHHTTS
T ss_pred hhHHHHHHHHHHHhCCe
Confidence 78899999888999998
No 5
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.12 E-value=93 Score=22.98 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=19.8
Q ss_pred hHHHHHHCCCeEEecCCCCCccccccCCChhhhhhH
Q 022376 12 GFKQLHCKGWRSVYLNPERPQFLGTSTTNLNDSLVQ 47 (298)
Q Consensus 12 g~~~Lh~~Gwrs~Y~~~~l~af~GlaP~~l~~~l~Q 47 (298)
+.. |.++||+.+|+-. ...|+++.+..+|
T Consensus 27 ~~~-l~~~G~~Vi~LG~------~~p~e~~~~~~~~ 55 (156)
T d3bula2 27 GVV-LQCNNYEIVDLGV------MVPAEKILRTAKE 55 (156)
T ss_dssp HHH-HHTTTCEEEECCS------SBCHHHHHHHHHH
T ss_pred HHH-HHHCCCEEEECCC------CCCHHHHHHHHHh
Confidence 455 7889999999864 3456666655544
No 6
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=6.75 E-value=64 Score=21.50 Aligned_cols=14 Identities=43% Similarity=0.698 Sum_probs=10.2
Q ss_pred HHhHHHHHHCCCeEE
Q 022376 10 FTGFKQLHCKGWRSV 24 (298)
Q Consensus 10 ~Tg~~~Lh~~Gwrs~ 24 (298)
.|-+. ||..||.++
T Consensus 47 ~~rii-lhen~we~~ 60 (98)
T d2gnoa1 47 LTRII-LHENTWESV 60 (98)
T ss_dssp HHHHH-HHTSCCCSH
T ss_pred HHHHh-cccCcccch
Confidence 35567 888888774
No 7
>d1o6ba_ c.26.1.3 (A:) Phosphopantetheine adenylyltransferase {Bacillus subtilis [TaxId: 1423]}
Probab=6.01 E-value=76 Score=22.40 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=13.5
Q ss_pred ccccCCChhhhhhHhhh
Q 022376 34 LGTSTTNLNDSLVQGTR 50 (298)
Q Consensus 34 ~GlaP~~l~~~l~Qr~R 50 (298)
.++.|+.+.+|++|+.|
T Consensus 142 ~~lVP~~V~~yI~e~~~ 158 (163)
T d1o6ba_ 142 SEFVPPEVELALQQKFR 158 (163)
T ss_dssp TTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHh
Confidence 46679999999988765
No 8
>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}
Probab=5.73 E-value=2.2e+02 Score=20.09 Aligned_cols=18 Identities=17% Similarity=0.360 Sum_probs=15.7
Q ss_pred HHHHCCCeEEecCCCCCc
Q 022376 15 QLHCKGWRSVYLNPERPQ 32 (298)
Q Consensus 15 ~Lh~~Gwrs~Y~~~~l~a 32 (298)
.|+..|++++.+|..++.
T Consensus 33 aLk~~g~~~IliN~NPeT 50 (121)
T d1a9xa4 33 ALREDGYETIMVNCNPET 50 (121)
T ss_dssp HHHHTTCEEEEECCCTTS
T ss_pred HHHhcCCeEEEEecChhh
Confidence 388999999999988875
No 9
>d2fkia1 d.198.3.1 (A:1-118) Hypothetical protein YjbR {Escherichia coli [TaxId: 562]}
Probab=5.57 E-value=23 Score=25.25 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=15.7
Q ss_pred hHHHhHHHHHHCCCeEEecCCCC
Q 022376 8 DYFTGFKQLHCKGWRSVYLNPER 30 (298)
Q Consensus 8 D~~Tg~~~Lh~~Gwrs~Y~~~~l 30 (298)
++..|.. |..+||-|++++...
T Consensus 66 ~i~p~~h-m~k~hWvsv~l~~~v 87 (118)
T d2fkia1 66 DVRPSRH-LNKAHWSTVYLDGSL 87 (118)
T ss_dssp TTCCCCS-SCTTTEEEEECTTTS
T ss_pred cccccCc-cCCCceEEEECCCCC
Confidence 4455666 778999999986433
No 10
>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}
Probab=5.25 E-value=2e+02 Score=20.47 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=15.2
Q ss_pred HHHCCCeEEecCCCCCc
Q 022376 16 LHCKGWRSVYLNPERPQ 32 (298)
Q Consensus 16 Lh~~Gwrs~Y~~~~l~a 32 (298)
|+..|++++.+|+.++.
T Consensus 37 lke~g~~~iliN~NP~T 53 (127)
T d1a9xa3 37 LREEGYRVINVNSNPAT 53 (127)
T ss_dssp HHHHTCEEEEECSCTTC
T ss_pred HHHcCCeEEEecCchHh
Confidence 88999999999988765
Done!