BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 022377
(298 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TV7|A Chain A, Structure Of The S-adenosylmethionine Dependent Enzyme
Moaa
pdb|1TV7|B Chain B, Structure Of The S-adenosylmethionine Dependent Enzyme
Moaa
pdb|1TV8|A Chain A, Structure Of Moaa In Complex With S-Adenosylmethionine
pdb|1TV8|B Chain B, Structure Of Moaa In Complex With S-Adenosylmethionine
pdb|2FB3|A Chain A, Structure Of Moaa In Complex With 5'-Gtp
pdb|2FB3|B Chain B, Structure Of Moaa In Complex With 5'-Gtp
Length = 340
Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 170/310 (54%), Gaps = 13/310 (4%)
Query: 1 MPPE--GVDLT--PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLS 56
MP E G D PK +LL+ +E+ R+A ++ GV KIR+TGGEP +R+D++ L+
Sbjct: 32 MPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLN 91
Query: 57 KLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRK-GHEKVMES 115
++ G++ + +TTNGL L + KL ++GL +N+SLD + F+ + R ++E
Sbjct: 92 QIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQ 151
Query: 116 INAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPF-DGNVWNVKKL 174
I+ A +G N VKVN V+ +G NDD+I +E +D+ I IRFIEFM + N W+ K+
Sbjct: 152 IDYATSIGLN-VKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKV 210
Query: 175 VPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLL 234
V EML + + F + E AK ++ + ITS+++ FC+ C R RL
Sbjct: 211 VTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLS 270
Query: 235 ADGNFKVCLFGPSE-VSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRP- 292
+DG F CLF + +++ +R +D+EL+E A + + ++ ANR
Sbjct: 271 SDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQR 330
Query: 293 ----MIHIGG 298
M +IGG
Sbjct: 331 KKINMNYIGG 340
>pdb|2FB2|A Chain A, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
pdb|2FB2|B Chain B, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
Length = 340
Score = 165 bits (417), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 168/310 (54%), Gaps = 13/310 (4%)
Query: 1 MPPE--GVDLT--PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLS 56
MP E G D PK +LL+ +E+ R+A ++ GV KIR+TGGEP +R+D++ L+
Sbjct: 32 MPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLN 91
Query: 57 KLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRK-GHEKVMES 115
++ G++ + +TTNGL L + KL ++GL +N+SLD + F+ + R ++E
Sbjct: 92 QIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQ 151
Query: 116 INAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPF-DGNVWNVKKL 174
I+ A +G N VKVN V+ +G NDD+I +E +D+ I IRFIEFM + N W+ K+
Sbjct: 152 IDYATSIGLN-VKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKV 210
Query: 175 VPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLL 234
V EML + + F + E AK ++ + ITS+++ FC+ C L
Sbjct: 211 VTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTAAALS 270
Query: 235 ADGNFKVCLFGPSE-VSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRP- 292
+DG F CLF + +++ +R +D+EL+E A + + ++ ANR
Sbjct: 271 SDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQR 330
Query: 293 ----MIHIGG 298
M +IGG
Sbjct: 331 KKINMNYIGG 340
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato
Length = 498
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 9/105 (8%)
Query: 64 LAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG 123
L + NG+ L PKLK SGLT + +S D L FE +K ++ ++A ++
Sbjct: 398 LKLRPNGVNL-NGPPKLKMSGLTYLRLSDDLLQTDNFELF------KKFVKKMHADLDPS 450
Query: 124 YNPVKVNCVVMRGFNDDEICDFVELTR-DRPINIRFIEFMPFDGN 167
N + V+ R + I + +E T+ RP + MP DG+
Sbjct: 451 PNAISP-AVLERSNSAITIDELMEATKGSRPFPWYDVTDMPVDGS 494
>pdb|1W6T|A Chain A, Crystal Structure Of Octameric Enolase From Streptococcus
Pneumoniae
pdb|1W6T|B Chain B, Crystal Structure Of Octameric Enolase From Streptococcus
Pneumoniae
Length = 444
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 92 LDTLVPAKFEFLTRRKGHEKVMESINAAIE-VGYNPVKVNCVVMRGFNDDEICDFVELTR 150
L+T V + F R +G E +E+I AAIE GY P K V GF D +F + R
Sbjct: 208 LETAVGDEGGFAPRFEGTEDGVETILAAIEAAGYVPGK---DVFLGF-DCASSEFYDKER 263
Query: 151 DRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189
+ ++ F+G V+ + L+ +V K+P
Sbjct: 264 ------KVYDYTKFEGEGAAVRTSAEQIDYLEELVNKYP 296
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 109 HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP 153
E V E+ N +VGYNP V V + G+N D + +E T + P
Sbjct: 166 QEIVKETSNFIKKVGYNPKTVPFVPISGWNGD---NMIEATTNAP 207
>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
pdb|2EIH|B Chain B, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase
Length = 343
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Query: 7 DLTPKPQLLSLNEILRLAYLFVTSG---VDKIRLTGGEPTV----RKDIEEACFHLSKLK 59
+L PKP+ LS E + F+T+ VDK+ + G+ + + A ++KL
Sbjct: 131 NLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLF 190
Query: 60 GLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINA 118
G + +A + KL + K G P + LT KG +KV++ A
Sbjct: 191 GARVIATAGS----EDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTGA 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,819,878
Number of Sequences: 62578
Number of extensions: 353333
Number of successful extensions: 734
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 728
Number of HSP's gapped (non-prelim): 9
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)