Query 022377
Match_columns 298
No_of_seqs 187 out of 2569
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:03:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02951 Molybderin biosynthes 100.0 7E-50 1.5E-54 361.7 34.7 298 1-298 76-373 (373)
2 COG2896 MoaA Molybdenum cofact 100.0 4.2E-50 9.2E-55 347.8 31.1 293 1-298 29-322 (322)
3 PRK13361 molybdenum cofactor b 100.0 1.1E-49 2.4E-54 356.7 34.2 292 6-298 36-329 (329)
4 TIGR02666 moaA molybdenum cofa 100.0 1.1E-46 2.3E-51 338.9 34.0 292 6-298 34-334 (334)
5 PRK00164 moaA molybdenum cofac 100.0 4.2E-46 9.2E-51 334.7 34.3 290 7-298 41-331 (331)
6 KOG2876 Molybdenum cofactor bi 100.0 6.6E-44 1.4E-48 293.3 14.0 295 1-298 29-323 (323)
7 TIGR02668 moaA_archaeal probab 100.0 1.6E-40 3.4E-45 295.0 31.9 262 12-279 37-301 (302)
8 TIGR02109 PQQ_syn_pqqE coenzym 100.0 1.7E-34 3.8E-39 262.2 23.3 270 10-298 32-310 (358)
9 PRK05301 pyrroloquinoline quin 100.0 3.3E-34 7.2E-39 262.0 22.4 270 10-298 41-319 (378)
10 TIGR03470 HpnH hopanoid biosyn 100.0 5E-31 1.1E-35 234.7 18.2 253 12-297 56-310 (318)
11 PRK13758 anaerobic sulfatase-m 100.0 9E-30 2E-34 232.3 19.5 273 13-298 37-328 (370)
12 PRK13745 anaerobic sulfatase-m 100.0 2.3E-29 4.9E-34 232.0 20.9 271 12-298 45-350 (412)
13 COG0535 Predicted Fe-S oxidore 99.9 1.9E-25 4E-30 202.0 24.7 269 12-298 45-321 (347)
14 COG0641 AslB Arylsulfatase reg 99.9 1.4E-25 3E-30 202.0 19.0 264 14-298 36-325 (378)
15 TIGR02493 PFLA pyruvate format 99.9 2.5E-20 5.4E-25 159.7 17.5 153 12-169 43-205 (235)
16 PRK13762 tRNA-modifying enzyme 99.9 1.2E-19 2.7E-24 161.2 21.5 170 11-185 89-285 (322)
17 PF06463 Mob_synth_C: Molybden 99.8 6.3E-21 1.4E-25 146.8 10.5 126 154-280 1-127 (128)
18 TIGR01290 nifB nitrogenase cof 99.8 1.2E-19 2.5E-24 167.7 20.7 151 12-164 57-228 (442)
19 TIGR02494 PFLE_PFLC glycyl-rad 99.8 6.1E-20 1.3E-24 162.5 15.6 153 12-169 103-264 (295)
20 PRK10076 pyruvate formate lyas 99.8 2.8E-19 6.2E-24 149.6 17.8 153 11-168 15-174 (213)
21 PRK11145 pflA pyruvate formate 99.8 3.2E-19 6.9E-24 153.9 16.6 154 11-169 47-210 (246)
22 TIGR02495 NrdG2 anaerobic ribo 99.8 1.9E-18 4E-23 143.5 17.5 138 10-153 42-183 (191)
23 PRK14456 ribosomal RNA large s 99.8 8.2E-18 1.8E-22 151.4 20.3 157 12-171 146-325 (368)
24 COG2100 Predicted Fe-S oxidore 99.8 1.7E-17 3.6E-22 141.5 19.4 172 13-186 139-323 (414)
25 COG1964 Predicted Fe-S oxidore 99.7 4.4E-17 9.5E-22 144.9 14.3 223 13-245 89-328 (475)
26 PF04055 Radical_SAM: Radical 99.7 1.5E-16 3.3E-21 127.9 14.8 139 9-149 22-166 (166)
27 TIGR03278 methan_mark_10 putat 99.7 9.7E-16 2.1E-20 139.4 21.2 151 11-165 50-209 (404)
28 COG1180 PflA Pyruvate-formate 99.7 8.3E-16 1.8E-20 132.8 18.0 136 31-171 83-223 (260)
29 PRK14469 ribosomal RNA large s 99.7 1.3E-15 2.7E-20 137.2 19.5 151 13-166 127-293 (343)
30 TIGR00048 radical SAM enzyme, 99.7 1.9E-15 4.1E-20 136.0 19.7 156 12-170 130-304 (355)
31 PRK14468 ribosomal RNA large s 99.7 1.6E-15 3.4E-20 135.9 18.7 154 11-167 117-289 (343)
32 PRK14455 ribosomal RNA large s 99.7 2.8E-15 6.2E-20 134.9 20.1 159 10-171 132-309 (356)
33 PRK14460 ribosomal RNA large s 99.7 2E-15 4.3E-20 135.8 18.8 155 12-169 127-302 (354)
34 smart00729 Elp3 Elongator prot 99.7 2.2E-15 4.7E-20 126.3 17.0 157 12-170 27-198 (216)
35 TIGR03822 AblA_like_2 lysine-2 99.7 6.4E-15 1.4E-19 131.4 18.1 168 12-189 116-295 (321)
36 PRK14459 ribosomal RNA large s 99.6 1.3E-14 2.8E-19 130.3 18.7 172 12-186 146-346 (373)
37 PRK14470 ribosomal RNA large s 99.6 2.1E-14 4.5E-19 128.1 19.6 149 14-166 124-288 (336)
38 COG0731 Fe-S oxidoreductases [ 99.6 2.7E-14 5.9E-19 123.1 19.4 139 11-155 53-205 (296)
39 PRK14453 chloramphenicol/florf 99.6 2.2E-14 4.8E-19 128.4 18.4 155 10-167 123-296 (347)
40 PRK14463 ribosomal RNA large s 99.6 4.2E-14 9E-19 127.0 20.2 154 12-167 128-293 (349)
41 PRK14466 ribosomal RNA large s 99.6 3.8E-14 8.3E-19 125.9 19.1 157 12-170 128-296 (345)
42 PRK14457 ribosomal RNA large s 99.6 4.2E-14 9.1E-19 126.5 19.5 156 12-170 126-301 (345)
43 PRK07094 biotin synthase; Prov 99.6 8.2E-14 1.8E-18 125.0 21.0 171 13-186 68-242 (323)
44 TIGR03821 AblA_like_1 lysine-2 99.6 6E-14 1.3E-18 125.0 17.9 160 12-185 122-294 (321)
45 TIGR03820 lys_2_3_AblA lysine- 99.6 1E-13 2.2E-18 125.8 18.1 169 12-191 135-315 (417)
46 PRK14462 ribosomal RNA large s 99.6 1.3E-13 2.8E-18 123.4 18.2 156 12-170 135-309 (356)
47 cd01335 Radical_SAM Radical SA 99.6 1.6E-13 3.4E-18 113.6 17.4 151 18-170 31-187 (204)
48 PRK14467 ribosomal RNA large s 99.6 1.9E-13 4.1E-18 122.4 17.9 153 13-169 125-299 (348)
49 TIGR03365 Bsubt_queE 7-cyano-7 99.6 8.5E-14 1.8E-18 119.1 14.2 107 14-135 55-161 (238)
50 PRK05660 HemN family oxidoredu 99.6 8.1E-13 1.7E-17 120.7 21.3 158 12-170 31-205 (378)
51 PRK14454 ribosomal RNA large s 99.5 7E-13 1.5E-17 118.8 19.2 155 12-169 126-296 (342)
52 PRK14465 ribosomal RNA large s 99.5 1.5E-12 3.4E-17 115.9 19.1 149 13-164 131-295 (342)
53 PRK15108 biotin synthase; Prov 99.5 2.4E-12 5.2E-17 115.9 20.5 169 12-185 73-248 (345)
54 TIGR00238 KamA family protein. 99.5 1E-12 2.2E-17 117.7 17.5 157 17-186 144-312 (331)
55 TIGR00433 bioB biotin syntheta 99.5 6.3E-12 1.4E-16 111.4 22.0 170 12-186 59-234 (296)
56 PRK06256 biotin synthase; Vali 99.5 5.6E-12 1.2E-16 113.7 20.9 169 13-185 89-262 (336)
57 PRK09240 thiH thiamine biosynt 99.5 2.4E-12 5.3E-17 117.1 18.5 170 11-186 100-284 (371)
58 PLN02389 biotin synthase 99.5 4.1E-12 8.9E-17 115.3 19.8 168 13-185 114-290 (379)
59 TIGR00539 hemN_rel putative ox 99.5 3.2E-12 6.9E-17 116.3 17.7 138 32-170 52-198 (360)
60 PRK11194 ribosomal RNA large s 99.4 8.9E-12 1.9E-16 112.4 18.2 155 12-169 128-307 (372)
61 PRK08446 coproporphyrinogen II 99.4 9.9E-12 2.2E-16 112.5 18.1 157 12-169 25-195 (350)
62 COG5014 Predicted Fe-S oxidore 99.4 1.3E-11 2.8E-16 96.6 14.8 142 6-153 65-213 (228)
63 PRK09249 coproporphyrinogen II 99.4 1.5E-11 3.3E-16 115.0 17.5 149 13-162 76-241 (453)
64 TIGR00538 hemN oxygen-independ 99.4 3.1E-11 6.6E-16 113.1 19.4 147 14-161 77-240 (455)
65 PRK13347 coproporphyrinogen II 99.4 4.1E-11 8.8E-16 112.1 17.9 148 14-162 78-242 (453)
66 TIGR02351 thiH thiazole biosyn 99.3 4.7E-11 1E-15 108.6 16.6 171 11-186 99-283 (366)
67 PRK05799 coproporphyrinogen II 99.3 1.1E-10 2.4E-15 106.9 18.4 154 14-168 30-195 (374)
68 PRK08599 coproporphyrinogen II 99.3 6.4E-11 1.4E-15 108.4 16.5 137 31-167 51-195 (377)
69 PRK08208 coproporphyrinogen II 99.3 2.7E-10 5.8E-15 105.9 20.0 156 15-170 68-239 (430)
70 TIGR03699 mena_SCO4550 menaqui 99.3 2.1E-10 4.5E-15 103.7 17.3 171 13-185 70-260 (340)
71 TIGR03551 F420_cofH 7,8-dideme 99.3 2.1E-10 4.6E-15 103.6 17.3 171 13-185 68-262 (343)
72 PRK08508 biotin synthase; Prov 99.3 4.3E-10 9.4E-15 98.6 18.6 167 14-185 39-211 (279)
73 PRK05904 coproporphyrinogen II 99.3 6.4E-10 1.4E-14 100.6 20.0 138 31-169 56-200 (353)
74 PRK06267 hypothetical protein; 99.3 8.2E-10 1.8E-14 99.9 20.4 168 13-186 61-229 (350)
75 PRK14461 ribosomal RNA large s 99.3 5.7E-10 1.2E-14 99.6 18.9 158 12-171 132-324 (371)
76 PRK14464 ribosomal RNA large s 99.3 1.9E-10 4.2E-15 102.4 15.1 157 12-171 121-289 (344)
77 COG0502 BioB Biotin synthase a 99.2 5E-10 1.1E-14 98.5 16.6 173 10-186 79-256 (335)
78 PRK05628 coproporphyrinogen II 99.2 5.6E-10 1.2E-14 102.2 17.3 137 32-168 60-204 (375)
79 PRK08207 coproporphyrinogen II 99.2 1.1E-09 2.4E-14 102.8 19.3 156 14-169 192-366 (488)
80 PRK06294 coproporphyrinogen II 99.2 1.5E-09 3.2E-14 99.1 17.0 136 32-168 59-199 (370)
81 TIGR01212 radical SAM protein, 99.1 5.6E-09 1.2E-13 92.6 18.5 169 17-186 63-246 (302)
82 COG0820 Predicted Fe-S-cluster 99.1 3.7E-09 7.9E-14 93.2 16.7 172 11-185 125-316 (349)
83 PF13353 Fer4_12: 4Fe-4S singl 99.1 5E-11 1.1E-15 93.6 4.3 88 9-97 30-120 (139)
84 PRK14338 (dimethylallyl)adenos 99.1 1.2E-08 2.6E-13 95.6 20.5 157 11-168 180-351 (459)
85 cd03174 DRE_TIM_metallolyase D 99.1 1.5E-08 3.2E-13 88.3 19.8 173 2-189 5-189 (265)
86 TIGR00423 radical SAM domain p 99.1 1.3E-08 2.9E-13 90.6 19.2 171 13-185 34-227 (309)
87 PRK07379 coproporphyrinogen II 99.0 1.4E-08 3.1E-13 93.5 17.9 149 20-168 50-211 (400)
88 PRK06582 coproporphyrinogen II 99.0 1.6E-08 3.4E-13 92.8 17.3 136 31-167 62-205 (390)
89 PRK06245 cofG FO synthase subu 99.0 1.5E-08 3.2E-13 91.5 16.9 168 13-185 39-233 (336)
90 PF13394 Fer4_14: 4Fe-4S singl 99.0 2.3E-10 4.9E-15 87.4 4.1 83 10-94 24-118 (119)
91 PRK14334 (dimethylallyl)adenos 99.0 8.6E-08 1.9E-12 89.5 20.9 157 11-169 163-334 (440)
92 PLN02428 lipoic acid synthase 99.0 8.9E-08 1.9E-12 85.5 19.9 166 12-180 127-303 (349)
93 TIGR03700 mena_SCO4494 putativ 99.0 4.9E-08 1.1E-12 88.5 18.0 170 14-185 78-269 (351)
94 PRK09057 coproporphyrinogen II 99.0 3.3E-08 7.2E-13 90.6 17.1 136 31-167 55-198 (380)
95 PRK08898 coproporphyrinogen II 99.0 9.3E-08 2E-12 88.0 19.5 137 32-169 74-218 (394)
96 TIGR00510 lipA lipoate synthas 98.9 1.5E-07 3.3E-12 83.0 19.3 148 12-162 88-245 (302)
97 TIGR01125 MiaB-like tRNA modif 98.9 2E-07 4.3E-12 86.9 20.9 157 12-169 161-332 (430)
98 PRK14862 rimO ribosomal protei 98.9 9.3E-08 2E-12 89.2 18.4 163 11-179 164-354 (440)
99 TIGR02026 BchE magnesium-proto 98.9 1E-07 2.2E-12 90.4 18.7 153 13-167 220-381 (497)
100 COG2108 Uncharacterized conser 98.9 1.4E-08 3E-13 87.7 11.4 129 16-156 63-195 (353)
101 PRK07360 FO synthase subunit 2 98.9 1.2E-07 2.7E-12 86.5 18.2 149 13-163 89-254 (371)
102 TIGR03550 F420_cofG 7,8-dideme 98.9 7.8E-08 1.7E-12 86.2 16.4 169 13-185 33-229 (322)
103 PTZ00413 lipoate synthase; Pro 98.9 3.8E-07 8.2E-12 81.4 19.9 165 12-180 174-351 (398)
104 TIGR03471 HpnJ hopanoid biosyn 98.9 1.6E-07 3.4E-12 88.7 18.8 152 13-167 225-381 (472)
105 PRK12928 lipoyl synthase; Prov 98.9 3.3E-07 7.2E-12 80.6 18.7 166 12-180 84-260 (290)
106 PRK08444 hypothetical protein; 98.9 2.4E-07 5.3E-12 83.6 18.2 171 13-185 78-268 (353)
107 PRK09058 coproporphyrinogen II 98.9 2.4E-07 5.2E-12 86.7 18.3 136 32-168 115-259 (449)
108 TIGR02491 NrdG anaerobic ribon 98.8 1.8E-08 3.8E-13 80.5 8.8 93 11-106 42-145 (154)
109 PRK14331 (dimethylallyl)adenos 98.8 8.2E-07 1.8E-11 82.9 20.2 158 11-169 171-342 (437)
110 COG0635 HemN Coproporphyrinoge 98.8 5.1E-07 1.1E-11 83.4 18.2 131 32-163 88-228 (416)
111 PRK09613 thiH thiamine biosynt 98.8 8.3E-07 1.8E-11 82.7 19.4 172 12-185 112-302 (469)
112 TIGR01579 MiaB-like-C MiaB-lik 98.8 1.5E-06 3.3E-11 80.7 20.8 159 11-170 163-336 (414)
113 COG1625 Fe-S oxidoreductase, r 98.8 2E-07 4.4E-12 83.4 14.1 135 34-170 81-222 (414)
114 COG1313 PflX Uncharacterized F 98.8 8E-07 1.7E-11 75.8 16.7 173 6-184 140-321 (335)
115 TIGR00089 RNA modification enz 98.7 1.8E-06 4E-11 80.5 20.1 159 11-170 164-337 (429)
116 PRK05481 lipoyl synthase; Prov 98.7 1.4E-06 3.1E-11 76.7 17.7 148 13-163 78-235 (289)
117 PRK08445 hypothetical protein; 98.7 1.8E-06 3.9E-11 78.0 18.7 141 12-154 70-225 (348)
118 PRK14332 (dimethylallyl)adenos 98.7 4.4E-06 9.5E-11 78.2 21.4 159 10-169 178-348 (449)
119 TIGR01574 miaB-methiolase tRNA 98.7 4E-06 8.6E-11 78.4 20.7 159 11-170 170-345 (438)
120 PRK14339 (dimethylallyl)adenos 98.7 4.7E-06 1E-10 77.4 20.7 156 12-168 153-326 (420)
121 PRK14336 (dimethylallyl)adenos 98.7 5.2E-06 1.1E-10 77.1 20.6 158 11-169 149-321 (418)
122 PRK05927 hypothetical protein; 98.7 1.3E-06 2.8E-11 78.9 15.9 171 13-185 74-266 (350)
123 PRK14335 (dimethylallyl)adenos 98.7 7.7E-06 1.7E-10 76.8 21.7 158 12-170 178-356 (455)
124 PRK14328 (dimethylallyl)adenos 98.6 6.2E-06 1.4E-10 77.1 20.7 159 11-170 172-345 (439)
125 PRK14325 (dimethylallyl)adenos 98.6 5.6E-06 1.2E-10 77.6 20.4 157 13-170 174-347 (444)
126 TIGR01211 ELP3 histone acetylt 98.6 6.7E-06 1.4E-10 77.8 19.9 173 13-187 113-329 (522)
127 PRK14340 (dimethylallyl)adenos 98.6 9.8E-06 2.1E-10 75.8 20.8 157 11-169 174-345 (445)
128 COG1509 KamA Lysine 2,3-aminom 98.6 1.9E-06 4.2E-11 75.9 14.9 132 14-155 140-282 (369)
129 TIGR01578 MiaB-like-B MiaB-lik 98.6 1.4E-05 3E-10 74.4 20.7 165 11-176 158-337 (420)
130 PRK14327 (dimethylallyl)adenos 98.6 1.7E-05 3.6E-10 75.1 21.1 157 11-169 237-409 (509)
131 PRK08629 coproporphyrinogen II 98.5 1.3E-05 2.8E-10 74.7 19.6 145 20-166 85-241 (433)
132 PRK05926 hypothetical protein; 98.5 3.1E-06 6.8E-11 76.9 14.5 149 12-163 96-260 (370)
133 PRK14330 (dimethylallyl)adenos 98.5 2.3E-05 5E-10 73.2 20.6 158 12-170 166-338 (434)
134 PRK14333 (dimethylallyl)adenos 98.5 2E-05 4.4E-10 73.8 19.6 158 11-169 173-352 (448)
135 PRK14326 (dimethylallyl)adenos 98.5 4.1E-05 8.8E-10 72.7 21.0 159 11-170 182-355 (502)
136 PRK14337 (dimethylallyl)adenos 98.4 5.3E-05 1.1E-09 71.0 21.2 158 10-168 172-345 (446)
137 COG1060 ThiH Thiamine biosynth 98.4 1.7E-05 3.8E-10 71.8 17.2 173 11-185 86-280 (370)
138 PRK11121 nrdG anaerobic ribonu 98.4 5.5E-07 1.2E-11 71.8 6.7 81 12-95 44-130 (154)
139 PRK09234 fbiC FO synthase; Rev 98.4 1.3E-05 2.8E-10 79.9 16.6 171 11-185 98-298 (843)
140 PRK14329 (dimethylallyl)adenos 98.4 0.00011 2.3E-09 69.4 21.3 159 11-170 193-371 (467)
141 TIGR01210 conserved hypothetic 98.4 8.1E-05 1.8E-09 66.4 19.2 153 14-167 45-216 (313)
142 COG0621 MiaB 2-methylthioadeni 98.3 0.00011 2.5E-09 67.6 19.5 159 9-168 167-341 (437)
143 COG0602 NrdG Organic radical a 98.2 2.4E-06 5.1E-11 71.7 6.5 69 11-82 52-123 (212)
144 COG0320 LipA Lipoate synthase 98.2 0.00012 2.6E-09 62.3 16.5 169 10-181 92-270 (306)
145 TIGR03279 cyano_FeS_chp putati 98.2 4.2E-05 9.1E-10 70.0 13.7 97 73-170 127-228 (433)
146 TIGR02826 RNR_activ_nrdG3 anae 98.1 1.3E-05 2.8E-10 63.3 8.3 72 12-89 43-114 (147)
147 PRK09234 fbiC FO synthase; Rev 98.1 0.00019 4.1E-09 71.8 17.4 137 12-154 554-709 (843)
148 PRK11858 aksA trans-homoaconit 98.1 0.00032 6.9E-09 64.3 17.5 147 2-155 12-160 (378)
149 cd07939 DRE_TIM_NifV Streptomy 98.0 0.00087 1.9E-08 58.2 18.4 174 2-188 6-181 (259)
150 COG1856 Uncharacterized homolo 98.0 0.0021 4.6E-08 53.2 18.9 168 15-187 39-214 (275)
151 cd07948 DRE_TIM_HCS Saccharomy 98.0 0.00054 1.2E-08 59.5 16.5 173 2-188 8-183 (262)
152 KOG2900 Biotin synthase [Coenz 98.0 4.7E-05 1E-09 63.8 9.3 219 11-246 113-344 (380)
153 TIGR02090 LEU1_arch isopropylm 98.0 0.00073 1.6E-08 61.6 17.7 146 2-155 8-156 (363)
154 PF13186 SPASM: Iron-sulfur cl 97.9 1E-05 2.2E-10 54.1 2.6 46 225-276 1-48 (64)
155 COG1533 SplB DNA repair photol 97.7 0.0051 1.1E-07 54.3 17.3 145 15-162 62-221 (297)
156 cd07943 DRE_TIM_HOA 4-hydroxy- 97.7 0.0096 2.1E-07 51.8 18.9 165 2-189 8-184 (263)
157 cd07941 DRE_TIM_LeuA3 Desulfob 97.7 0.011 2.4E-07 51.8 19.1 175 2-189 6-194 (273)
158 PLN02746 hydroxymethylglutaryl 97.7 0.013 2.7E-07 52.9 19.6 173 2-189 54-240 (347)
159 cd07940 DRE_TIM_IPMS 2-isoprop 97.6 0.011 2.4E-07 51.6 18.7 173 2-189 6-186 (268)
160 cd07938 DRE_TIM_HMGL 3-hydroxy 97.6 0.014 3.1E-07 51.0 18.8 174 2-189 6-192 (274)
161 TIGR02660 nifV_homocitr homoci 97.6 0.0058 1.3E-07 55.8 16.7 147 2-155 9-157 (365)
162 COG2516 Biotin synthase-relate 97.5 0.0043 9.3E-08 54.2 13.7 150 32-182 87-244 (339)
163 PRK08195 4-hyroxy-2-oxovalerat 97.3 0.03 6.4E-07 50.6 18.0 137 2-155 11-159 (337)
164 COG1243 ELP3 Histone acetyltra 97.3 0.027 5.9E-07 51.7 17.1 172 15-188 113-322 (515)
165 TIGR03217 4OH_2_O_val_ald 4-hy 97.3 0.035 7.6E-07 50.0 18.0 138 2-155 10-158 (333)
166 PRK14041 oxaloacetate decarbox 97.2 0.035 7.7E-07 52.1 17.6 166 2-188 10-195 (467)
167 PRK09389 (R)-citramalate synth 97.2 0.036 7.8E-07 52.6 17.8 147 2-155 10-158 (488)
168 PRK05692 hydroxymethylglutaryl 97.2 0.091 2E-06 46.3 19.2 173 2-189 12-198 (287)
169 PRK12331 oxaloacetate decarbox 97.2 0.048 1E-06 51.0 17.9 166 2-188 11-196 (448)
170 cd07945 DRE_TIM_CMS Leptospira 97.0 0.12 2.6E-06 45.4 18.2 172 2-189 5-190 (280)
171 COG1242 Predicted Fe-S oxidore 97.0 0.11 2.3E-06 44.9 17.0 169 19-188 68-253 (312)
172 TIGR01108 oadA oxaloacetate de 97.0 0.07 1.5E-06 51.7 17.9 166 2-188 6-191 (582)
173 PF00682 HMGL-like: HMGL-like 97.0 0.0064 1.4E-07 52.0 9.9 168 12-190 8-181 (237)
174 cd07944 DRE_TIM_HOA_like 4-hyd 97.0 0.2 4.4E-06 43.6 19.4 156 12-188 14-180 (266)
175 KOG1160 Fe-S oxidoreductase [E 97.0 0.0078 1.7E-07 54.7 10.3 112 34-151 356-471 (601)
176 PRK09282 pyruvate carboxylase 97.0 0.07 1.5E-06 51.8 17.6 166 2-188 11-196 (592)
177 PRK14040 oxaloacetate decarbox 96.8 0.12 2.7E-06 50.1 18.0 157 12-188 21-197 (593)
178 PRK00915 2-isopropylmalate syn 96.8 0.1 2.2E-06 49.9 17.0 148 2-155 12-164 (513)
179 cd07947 DRE_TIM_Re_CS Clostrid 96.7 0.11 2.4E-06 45.6 15.6 143 2-155 8-164 (279)
180 TIGR00977 LeuA_rel 2-isopropyl 96.7 0.2 4.2E-06 48.1 18.4 175 2-189 9-197 (526)
181 PRK00955 hypothetical protein; 96.7 0.19 4E-06 48.8 17.9 118 47-166 388-521 (620)
182 PRK01254 hypothetical protein; 96.7 0.14 3E-06 49.8 16.6 152 13-165 400-599 (707)
183 COG1032 Fe-S oxidoreductase [E 96.6 0.088 1.9E-06 49.7 14.8 94 76-170 302-402 (490)
184 PRK12344 putative alpha-isopro 96.5 0.21 4.6E-06 47.8 16.6 147 2-155 13-173 (524)
185 COG1244 Predicted Fe-S oxidore 96.4 0.64 1.4E-05 41.1 18.7 142 6-150 70-231 (358)
186 cd07942 DRE_TIM_LeuA Mycobacte 96.3 0.74 1.6E-05 40.5 18.1 178 2-189 9-205 (284)
187 PRK12330 oxaloacetate decarbox 96.2 0.54 1.2E-05 44.6 17.6 157 12-188 21-197 (499)
188 cd07937 DRE_TIM_PC_TC_5S Pyruv 96.2 0.46 9.9E-06 41.6 15.9 157 12-188 15-191 (275)
189 COG0119 LeuA Isopropylmalate/h 96.1 0.62 1.3E-05 43.2 17.2 176 2-189 10-189 (409)
190 PLN03228 methylthioalkylmalate 95.7 0.98 2.1E-05 43.0 16.8 175 2-189 92-282 (503)
191 TIGR03849 arch_ComA phosphosul 95.3 1.6 3.5E-05 37.2 17.3 136 13-164 7-158 (237)
192 PLN02321 2-isopropylmalate syn 95.2 1 2.2E-05 44.1 15.6 149 2-155 94-255 (632)
193 TIGR00973 leuA_bact 2-isopropy 95.0 1.8 3.8E-05 41.4 16.1 147 2-155 9-161 (494)
194 PF02679 ComA: (2R)-phospho-3- 94.9 0.41 8.9E-06 40.9 10.5 155 15-188 22-195 (244)
195 PF05853 DUF849: Prokaryotic p 94.6 0.39 8.4E-06 42.0 10.2 134 12-154 20-163 (272)
196 PRK12581 oxaloacetate decarbox 94.5 3.2 7E-05 39.1 16.3 130 12-155 29-178 (468)
197 KOG2672 Lipoate synthase [Coen 93.2 1.9 4.1E-05 37.3 11.2 149 13-167 140-299 (360)
198 PRK08091 ribulose-phosphate 3- 93.1 5 0.00011 34.1 14.8 115 16-149 23-141 (228)
199 PF11946 DUF3463: Domain of un 92.8 0.023 5E-07 43.6 -0.7 62 220-297 55-116 (138)
200 smart00876 BATS Biotin and Thi 92.5 0.93 2E-05 32.7 7.4 84 1-85 6-92 (94)
201 PRK03739 2-isopropylmalate syn 91.6 9.3 0.0002 37.0 15.2 145 2-151 38-196 (552)
202 PRK14042 pyruvate carboxylase 91.3 15 0.00033 35.9 16.4 157 12-188 20-196 (596)
203 PRK12999 pyruvate carboxylase; 90.8 22 0.00048 37.7 18.0 157 12-188 549-733 (1146)
204 PRK15452 putative protease; Pr 90.7 6 0.00013 37.2 12.7 112 28-149 20-156 (443)
205 PRK14847 hypothetical protein; 90.6 13 0.00027 33.6 14.6 140 12-154 48-202 (333)
206 TIGR00970 leuA_yeast 2-isoprop 90.6 12 0.00026 36.4 14.9 147 2-154 34-198 (564)
207 PF06968 BATS: Biotin and Thia 89.9 0.34 7.3E-06 35.0 2.9 78 1-85 6-91 (93)
208 cd00952 CHBPH_aldolase Trans-o 89.5 2.1 4.6E-05 38.1 8.3 108 12-130 23-141 (309)
209 COG0007 CysG Uroporphyrinogen- 89.4 1.6 3.5E-05 37.2 7.1 58 8-67 58-115 (244)
210 TIGR00126 deoC deoxyribose-pho 89.1 12 0.00027 31.3 16.5 134 7-157 7-149 (211)
211 COG2875 CobM Precorrin-4 methy 88.4 1 2.2E-05 38.0 5.0 154 13-187 57-217 (254)
212 COG0329 DapA Dihydrodipicolina 88.3 6.3 0.00014 35.0 10.4 107 12-129 19-135 (299)
213 cd07939 DRE_TIM_NifV Streptomy 88.2 16 0.00035 31.5 13.3 118 20-154 112-240 (259)
214 PRK03170 dihydrodipicolinate s 88.1 2.7 5.8E-05 37.1 8.0 109 11-130 15-133 (292)
215 COG1105 FruK Fructose-1-phosph 87.9 19 0.00041 32.0 13.0 110 7-127 103-218 (310)
216 cd07948 DRE_TIM_HCS Saccharomy 87.6 18 0.00039 31.4 12.7 114 20-150 114-237 (262)
217 PLN02417 dihydrodipicolinate s 87.1 3.5 7.5E-05 36.2 8.0 104 10-123 14-126 (280)
218 COG5016 Pyruvate/oxaloacetate 86.8 8.3 0.00018 35.4 10.1 80 14-94 152-234 (472)
219 PRK14057 epimerase; Provisiona 86.8 20 0.00043 31.0 14.6 115 15-148 29-154 (254)
220 PRK15447 putative protease; Pr 86.5 16 0.00035 32.4 12.0 124 16-149 13-153 (301)
221 cd00953 KDG_aldolase KDG (2-ke 86.2 5.1 0.00011 35.1 8.6 106 13-130 15-127 (279)
222 cd00408 DHDPS-like Dihydrodipi 85.9 7.7 0.00017 33.9 9.6 109 11-130 11-129 (281)
223 KOG2535 RNA polymerase II elon 85.7 12 0.00025 33.7 10.3 137 15-154 150-317 (554)
224 COG5016 Pyruvate/oxaloacetate 85.3 27 0.00059 32.2 12.5 157 14-189 24-199 (472)
225 PF10566 Glyco_hydro_97: Glyco 85.3 6.1 0.00013 34.5 8.4 56 13-70 27-95 (273)
226 cd01299 Met_dep_hydrolase_A Me 84.9 28 0.00061 31.1 13.2 69 15-88 117-197 (342)
227 PRK00507 deoxyribose-phosphate 84.7 23 0.0005 29.9 15.4 131 8-155 12-151 (221)
228 cd02071 MM_CoA_mut_B12_BD meth 84.4 6.1 0.00013 29.8 7.3 78 5-86 27-104 (122)
229 TIGR00674 dapA dihydrodipicoli 84.3 5.1 0.00011 35.2 7.7 109 11-130 12-130 (285)
230 COG0036 Rpe Pentose-5-phosphat 84.1 24 0.00052 29.7 14.7 113 16-149 14-132 (220)
231 PF00834 Ribul_P_3_epim: Ribul 84.0 7.3 0.00016 32.4 8.1 109 18-146 12-125 (201)
232 PF00701 DHDPS: Dihydrodipicol 84.0 10 0.00023 33.2 9.6 108 11-129 15-132 (289)
233 PRK11858 aksA trans-homoaconit 83.9 35 0.00076 31.4 13.4 25 50-75 149-174 (378)
234 TIGR02146 LysS_fung_arch homoc 83.9 32 0.00069 30.9 16.7 145 2-155 6-154 (344)
235 cd07944 DRE_TIM_HOA_like 4-hyd 83.8 17 0.00036 31.7 10.6 103 16-131 107-216 (266)
236 PRK13523 NADPH dehydrogenase N 83.7 11 0.00023 34.2 9.6 82 12-94 129-250 (337)
237 PRK04147 N-acetylneuraminate l 83.2 6.5 0.00014 34.7 7.9 110 10-130 16-136 (293)
238 TIGR02313 HpaI-NOT-DapA 2,4-di 83.1 6.5 0.00014 34.8 7.9 109 11-130 14-133 (294)
239 cd00959 DeoC 2-deoxyribose-5-p 83.1 25 0.00055 29.1 16.4 128 13-157 12-148 (203)
240 PRK15473 cbiF cobalt-precorrin 82.9 30 0.00065 29.8 12.1 56 14-71 63-118 (257)
241 cd00950 DHDPS Dihydrodipicolin 82.7 13 0.00028 32.6 9.6 109 11-130 14-132 (284)
242 TIGR00620 sporelyase spore pho 82.6 17 0.00038 30.1 9.6 79 48-131 12-91 (199)
243 cd04733 OYE_like_2_FMN Old yel 82.6 17 0.00036 32.8 10.5 81 12-93 136-258 (338)
244 PLN02645 phosphoglycolate phos 82.5 3.6 7.9E-05 36.6 6.1 73 10-86 11-87 (311)
245 TIGR03249 KdgD 5-dehydro-4-deo 82.2 16 0.00035 32.2 10.1 107 11-129 19-135 (296)
246 PRK08745 ribulose-phosphate 3- 82.1 30 0.00065 29.3 15.4 113 16-148 14-132 (223)
247 cd07943 DRE_TIM_HOA 4-hydroxy- 82.0 33 0.00072 29.7 13.2 121 18-154 112-242 (263)
248 PRK03620 5-dehydro-4-deoxygluc 81.7 18 0.00038 32.1 10.2 108 10-129 20-137 (303)
249 TIGR00683 nanA N-acetylneurami 81.4 9.1 0.0002 33.8 8.2 108 11-129 14-133 (290)
250 TIGR00646 MG010 DNA primase-re 80.5 23 0.00051 29.8 9.7 77 43-135 114-191 (218)
251 cd00954 NAL N-Acetylneuraminic 79.9 9.7 0.00021 33.5 7.8 108 11-129 14-133 (288)
252 cd00945 Aldolase_Class_I Class 79.8 30 0.00065 27.9 14.6 123 16-155 11-144 (201)
253 cd00951 KDGDH 5-dehydro-4-deox 79.5 12 0.00026 33.0 8.3 125 11-150 14-148 (289)
254 cd06543 GH18_PF-ChiA-like PF-C 79.3 45 0.00097 29.5 12.7 129 27-165 21-180 (294)
255 COG1809 (2R)-phospho-3-sulfola 79.3 27 0.00058 29.4 9.4 96 14-124 27-133 (258)
256 cd02932 OYE_YqiM_FMN Old yello 79.2 10 0.00022 34.1 8.0 75 14-91 237-320 (336)
257 PF13344 Hydrolase_6: Haloacid 79.1 2.3 5.1E-05 31.0 3.1 49 34-86 7-57 (101)
258 cd02801 DUS_like_FMN Dihydrour 79.0 17 0.00038 30.5 8.9 75 16-91 65-158 (231)
259 TIGR01235 pyruv_carbox pyruvat 78.9 96 0.0021 33.1 16.3 157 12-188 547-731 (1143)
260 PRK06769 hypothetical protein; 78.8 16 0.00034 29.4 8.2 51 41-93 26-83 (173)
261 COG0826 Collagenase and relate 78.7 27 0.00059 31.7 10.4 47 43-91 46-99 (347)
262 PRK09722 allulose-6-phosphate 78.6 41 0.00088 28.6 14.8 112 17-149 14-131 (229)
263 TIGR02090 LEU1_arch isopropylm 78.5 54 0.0012 30.0 13.2 58 18-77 112-172 (363)
264 PRK05692 hydroxymethylglutaryl 78.2 48 0.001 29.2 13.1 120 20-154 122-262 (287)
265 TIGR01108 oadA oxaloacetate de 78.1 62 0.0014 31.7 13.2 98 15-124 146-249 (582)
266 cd03319 L-Ala-DL-Glu_epimerase 77.9 50 0.0011 29.3 13.6 135 16-157 134-283 (316)
267 TIGR00640 acid_CoA_mut_C methy 77.8 14 0.00031 28.4 7.3 78 5-86 30-107 (132)
268 PHA02031 putative DnaG-like pr 77.7 19 0.00042 31.2 8.6 82 39-135 159-243 (266)
269 PRK08883 ribulose-phosphate 3- 77.3 43 0.00093 28.2 15.3 113 16-148 10-128 (220)
270 PRK13523 NADPH dehydrogenase N 77.2 9 0.0002 34.6 6.9 75 14-91 223-305 (337)
271 PRK14042 pyruvate carboxylase 77.1 78 0.0017 31.1 13.8 117 14-151 150-272 (596)
272 cd02803 OYE_like_FMN_family Ol 76.7 20 0.00043 32.0 9.0 83 11-94 127-251 (327)
273 cd02930 DCR_FMN 2,4-dienoyl-Co 76.5 20 0.00043 32.6 9.0 82 12-93 124-246 (353)
274 TIGR02660 nifV_homocitr homoci 76.2 62 0.0014 29.5 13.3 89 21-124 116-211 (365)
275 PRK12331 oxaloacetate decarbox 76.0 72 0.0016 30.1 12.7 98 15-124 151-254 (448)
276 cd02932 OYE_YqiM_FMN Old yello 76.0 24 0.00052 31.8 9.4 82 13-95 142-265 (336)
277 TIGR03128 RuMP_HxlA 3-hexulose 74.8 46 0.001 27.4 11.5 99 14-130 8-108 (206)
278 cd07937 DRE_TIM_PC_TC_5S Pyruv 74.8 57 0.0012 28.5 12.7 145 16-188 116-272 (275)
279 PRK14040 oxaloacetate decarbox 73.9 94 0.002 30.5 13.6 116 15-151 152-273 (593)
280 cd04747 OYE_like_5_FMN Old yel 73.9 31 0.00068 31.5 9.5 81 12-93 131-257 (361)
281 TIGR01496 DHPS dihydropteroate 73.0 61 0.0013 28.0 14.8 135 7-163 12-171 (257)
282 cd03315 MLE_like Muconate lact 73.0 61 0.0013 27.9 13.4 134 16-156 85-234 (265)
283 cd07940 DRE_TIM_IPMS 2-isoprop 72.9 62 0.0014 28.0 13.1 120 18-153 114-245 (268)
284 PRK12330 oxaloacetate decarbox 72.5 93 0.002 29.8 13.5 116 14-150 151-274 (499)
285 TIGR00737 nifR3_yhdG putative 72.3 38 0.00083 30.2 9.7 75 16-91 73-167 (319)
286 PF05913 DUF871: Bacterial pro 72.2 15 0.00032 33.5 7.0 143 16-163 12-177 (357)
287 PLN02334 ribulose-phosphate 3- 72.0 59 0.0013 27.4 11.6 117 22-155 79-197 (229)
288 cd02810 DHOD_DHPD_FMN Dihydroo 71.7 38 0.00083 29.6 9.5 75 16-91 109-196 (289)
289 cd02933 OYE_like_FMN Old yello 71.1 80 0.0017 28.5 13.5 84 11-94 138-264 (338)
290 cd02803 OYE_like_FMN_family Ol 71.0 30 0.00066 30.8 8.8 74 15-91 225-311 (327)
291 TIGR00262 trpA tryptophan synt 71.0 51 0.0011 28.5 9.8 98 64-163 13-125 (256)
292 PRK14041 oxaloacetate decarbox 70.9 98 0.0021 29.4 13.7 117 14-151 149-271 (467)
293 COG0685 MetF 5,10-methylenetet 69.9 65 0.0014 28.4 10.4 45 13-57 87-138 (291)
294 cd02931 ER_like_FMN Enoate red 69.8 32 0.00069 31.7 8.7 81 12-93 137-274 (382)
295 cd02940 DHPD_FMN Dihydropyrimi 69.2 57 0.0012 28.8 10.0 107 16-122 111-248 (299)
296 cd04724 Tryptophan_synthase_al 68.8 74 0.0016 27.2 18.3 117 14-148 10-151 (242)
297 cd02930 DCR_FMN 2,4-dienoyl-Co 68.8 26 0.00057 31.8 7.9 75 14-91 220-306 (353)
298 cd04747 OYE_like_5_FMN Old yel 68.4 24 0.00052 32.2 7.5 47 15-61 232-281 (361)
299 PLN02746 hydroxymethylglutaryl 68.0 96 0.0021 28.2 13.6 125 15-154 155-304 (347)
300 cd07941 DRE_TIM_LeuA3 Desulfob 68.0 82 0.0018 27.4 12.7 117 17-150 118-248 (273)
301 KOG2367 Alpha-isopropylmalate 67.6 1.1E+02 0.0025 28.9 13.9 139 11-155 72-219 (560)
302 cd04734 OYE_like_3_FMN Old yel 67.5 43 0.00093 30.3 9.0 82 12-93 128-251 (343)
303 PLN02540 methylenetetrahydrofo 66.9 1.3E+02 0.0028 29.3 14.3 46 13-58 68-124 (565)
304 PRK09936 hypothetical protein; 66.9 91 0.002 27.5 14.5 146 7-156 27-205 (296)
305 PF01136 Peptidase_U32: Peptid 65.8 41 0.0009 28.3 8.1 68 18-94 2-70 (233)
306 cd02801 DUS_like_FMN Dihydrour 65.6 39 0.00085 28.3 8.0 71 18-91 138-213 (231)
307 cd02931 ER_like_FMN Enoate red 65.6 51 0.0011 30.4 9.2 75 14-91 248-335 (382)
308 PRK07998 gatY putative fructos 65.5 96 0.0021 27.3 14.2 137 13-159 24-172 (283)
309 TIGR02351 thiH thiazole biosyn 65.0 10 0.00022 34.7 4.5 49 1-51 260-310 (366)
310 PRK12737 gatY tagatose-bisphos 64.9 99 0.0021 27.2 14.9 163 13-188 24-201 (284)
311 PRK06806 fructose-bisphosphate 64.6 1E+02 0.0022 27.2 18.4 163 13-187 24-198 (281)
312 TIGR01303 IMP_DH_rel_1 IMP deh 64.4 1.1E+02 0.0024 29.2 11.3 101 18-124 224-329 (475)
313 PLN02540 methylenetetrahydrofo 63.1 1.5E+02 0.0033 28.8 13.4 103 74-189 18-126 (565)
314 TIGR01465 cobM_cbiF precorrin- 63.0 36 0.00078 28.5 7.2 58 14-73 54-111 (229)
315 cd04733 OYE_like_2_FMN Old yel 62.9 58 0.0013 29.3 8.9 75 14-91 232-322 (338)
316 PF00682 HMGL-like: HMGL-like 62.8 63 0.0014 27.2 8.7 99 18-130 108-213 (237)
317 PRK07168 bifunctional uroporph 60.9 26 0.00057 33.3 6.5 55 13-69 62-116 (474)
318 TIGR02803 ExbD_1 TonB system t 60.6 55 0.0012 24.6 7.2 55 14-69 66-121 (122)
319 KOG4355 Predicted Fe-S oxidore 60.6 1.4E+02 0.003 27.5 13.9 161 13-177 214-393 (547)
320 COG0269 SgbH 3-hexulose-6-phos 60.5 1E+02 0.0022 25.9 13.0 121 13-157 11-134 (217)
321 PRK09282 pyruvate carboxylase 60.4 1.8E+02 0.0038 28.7 13.7 116 15-151 151-272 (592)
322 PRK12581 oxaloacetate decarbox 60.0 1.6E+02 0.0035 28.0 13.6 77 16-96 161-243 (468)
323 cd06564 GH20_DspB_LnbB-like Gl 59.9 24 0.00053 31.6 5.9 33 11-43 10-44 (326)
324 cd04735 OYE_like_4_FMN Old yel 59.9 1.4E+02 0.003 27.2 12.6 82 12-94 131-258 (353)
325 PRK12999 pyruvate carboxylase; 59.7 2.2E+02 0.0048 30.5 13.5 117 13-150 686-808 (1146)
326 COG3589 Uncharacterized conser 59.6 57 0.0012 29.4 7.8 87 4-94 4-101 (360)
327 PRK12677 xylose isomerase; Pro 59.6 1.5E+02 0.0032 27.4 14.1 92 12-124 28-128 (384)
328 PRK13210 putative L-xylulose 5 59.6 84 0.0018 27.1 9.2 78 17-96 93-185 (284)
329 PRK07329 hypothetical protein; 59.5 81 0.0018 26.9 8.8 67 48-124 167-240 (246)
330 PF11019 DUF2608: Protein of u 59.4 84 0.0018 27.1 8.9 119 43-165 81-214 (252)
331 TIGR00542 hxl6Piso_put hexulos 59.4 74 0.0016 27.5 8.8 78 17-96 93-185 (279)
332 TIGR00676 fadh2 5,10-methylene 59.2 1.2E+02 0.0026 26.4 13.7 107 73-191 17-126 (272)
333 cd00537 MTHFR Methylenetetrahy 58.9 1.2E+02 0.0026 26.3 13.4 122 13-149 68-211 (274)
334 PF01261 AP_endonuc_2: Xylose 58.8 53 0.0011 26.5 7.5 96 17-122 70-185 (213)
335 PRK07328 histidinol-phosphatas 58.3 57 0.0012 28.3 7.8 67 47-124 178-252 (269)
336 cd04734 OYE_like_3_FMN Old yel 57.8 75 0.0016 28.7 8.7 74 15-91 225-315 (343)
337 PRK09195 gatY tagatose-bisphos 57.4 1.4E+02 0.003 26.4 14.8 164 13-188 24-201 (284)
338 PRK13209 L-xylulose 5-phosphat 57.2 65 0.0014 27.9 8.1 78 17-96 98-190 (283)
339 PF01212 Beta_elim_lyase: Beta 57.1 30 0.00065 30.5 5.9 76 13-93 104-194 (290)
340 PF06189 5-nucleotidase: 5'-nu 56.9 1.3E+02 0.0029 26.1 13.4 130 16-157 46-215 (264)
341 COG1453 Predicted oxidoreducta 56.6 96 0.0021 28.4 8.8 109 15-136 90-208 (391)
342 PRK00915 2-isopropylmalate syn 56.3 1.9E+02 0.0042 27.8 13.4 55 83-151 220-275 (513)
343 TIGR01235 pyruv_carbox pyruvat 55.9 2.9E+02 0.0062 29.7 14.2 80 12-95 683-768 (1143)
344 cd02742 GH20_hexosaminidase Be 55.4 29 0.00063 30.8 5.6 53 11-65 9-89 (303)
345 TIGR01685 MDP-1 magnesium-depe 55.2 1.1E+02 0.0024 24.7 8.8 34 35-70 37-70 (174)
346 COG0041 PurE Phosphoribosylcar 55.0 96 0.0021 24.6 7.5 52 103-156 8-60 (162)
347 TIGR03217 4OH_2_O_val_ald 4-hy 54.8 1.6E+02 0.0036 26.5 11.5 56 19-75 115-172 (333)
348 PRK07259 dihydroorotate dehydr 54.3 1.1E+02 0.0024 26.9 9.1 74 16-90 102-188 (301)
349 cd06570 GH20_chitobiase-like_1 53.8 36 0.00077 30.4 5.8 60 10-71 10-93 (311)
350 PRK02261 methylaspartate mutas 53.7 58 0.0013 25.1 6.4 75 10-88 36-116 (137)
351 TIGR03572 WbuZ glycosyl amidat 53.6 76 0.0017 26.7 7.7 70 20-91 155-227 (232)
352 PRK05990 precorrin-2 C(20)-met 53.6 42 0.00091 28.7 6.1 46 20-68 87-132 (241)
353 cd00947 TBP_aldolase_IIB Tagat 53.4 1.6E+02 0.0034 25.9 17.6 165 13-188 19-195 (276)
354 PRK06256 biotin synthase; Vali 53.4 55 0.0012 29.3 7.1 33 15-47 252-285 (336)
355 PF03932 CutC: CutC family; I 53.3 70 0.0015 26.6 7.1 70 20-91 129-199 (201)
356 cd05015 SIS_PGI_1 Phosphogluco 53.2 63 0.0014 25.5 6.7 81 17-99 4-89 (158)
357 PTZ00175 diphthine synthase; P 53.2 46 0.001 29.0 6.3 51 19-73 66-116 (270)
358 PRK08195 4-hyroxy-2-oxovalerat 53.1 1.8E+02 0.0038 26.3 12.0 74 18-94 115-196 (337)
359 cd00381 IMPDH IMPDH: The catal 53.0 1.7E+02 0.0037 26.2 11.2 101 19-127 94-200 (325)
360 PRK12738 kbaY tagatose-bisphos 52.6 1.7E+02 0.0036 25.9 15.3 163 13-188 24-201 (286)
361 TIGR01163 rpe ribulose-phospha 52.4 1.3E+02 0.0028 24.6 11.7 64 21-90 69-132 (210)
362 cd04740 DHOD_1B_like Dihydroor 52.2 1.6E+02 0.0035 25.7 11.8 86 60-155 89-181 (296)
363 PRK14988 GMP/IMP nucleotidase; 52.1 49 0.0011 27.8 6.2 29 42-72 92-120 (224)
364 PRK08284 precorrin 6A synthase 52.1 48 0.001 28.6 6.2 48 21-69 93-142 (253)
365 cd04735 OYE_like_4_FMN Old yel 52.1 37 0.0008 30.9 5.8 75 14-91 231-313 (353)
366 PTZ00445 p36-lilke protein; Pr 52.0 58 0.0013 27.4 6.3 55 14-70 24-100 (219)
367 COG2185 Sbm Methylmalonyl-CoA 51.9 1E+02 0.0022 24.2 7.2 15 75-89 82-96 (143)
368 PRK08255 salicylyl-CoA 5-hydro 51.4 1.2E+02 0.0026 30.8 9.8 80 12-92 538-659 (765)
369 COG0106 HisA Phosphoribosylfor 50.9 1.6E+02 0.0035 25.2 10.9 87 60-149 97-190 (241)
370 PRK06801 hypothetical protein; 50.8 1.8E+02 0.0038 25.7 15.0 163 13-187 24-201 (286)
371 PRK10605 N-ethylmaleimide redu 50.6 97 0.0021 28.3 8.2 74 15-91 245-321 (362)
372 cd02933 OYE_like_FMN Old yello 50.6 1.3E+02 0.0027 27.3 8.9 75 14-91 237-314 (338)
373 COG3246 Uncharacterized conser 50.5 79 0.0017 27.8 7.1 59 11-70 22-86 (298)
374 PF01729 QRPTase_C: Quinolinat 50.4 82 0.0018 25.4 6.9 59 28-91 97-155 (169)
375 COG1751 Uncharacterized conser 50.3 1.3E+02 0.0028 23.9 10.7 117 9-135 5-134 (186)
376 KOG1615 Phosphoserine phosphat 50.3 68 0.0015 26.6 6.3 121 12-140 55-186 (227)
377 KOG0564 5,10-methylenetetrahyd 50.2 1.1E+02 0.0023 29.2 8.2 59 13-72 87-156 (590)
378 COG2230 Cfa Cyclopropane fatty 49.9 1.4E+02 0.003 26.3 8.6 101 33-135 66-180 (283)
379 cd04740 DHOD_1B_like Dihydroor 49.2 1.8E+02 0.0039 25.4 9.6 75 16-91 100-186 (296)
380 PRK13753 dihydropteroate synth 49.1 1.9E+02 0.004 25.5 10.8 83 7-95 14-106 (279)
381 TIGR01769 GGGP geranylgeranylg 48.3 1.6E+02 0.0035 24.5 9.0 76 13-90 129-204 (205)
382 cd07938 DRE_TIM_HMGL 3-hydroxy 48.2 1.9E+02 0.0041 25.2 13.4 64 48-124 151-219 (274)
383 PLN02625 uroporphyrin-III C-me 48.1 1.1E+02 0.0025 26.3 8.0 57 15-73 76-132 (263)
384 cd03316 MR_like Mandelate race 48.1 2.1E+02 0.0045 25.8 10.8 100 12-131 197-298 (357)
385 TIGR01469 cobA_cysG_Cterm urop 48.1 1.3E+02 0.0029 25.2 8.4 57 15-73 61-117 (236)
386 KOG4549 Magnesium-dependent ph 48.0 25 0.00055 26.8 3.3 56 39-96 40-98 (144)
387 PLN02645 phosphoglycolate phos 47.9 51 0.0011 29.3 5.9 71 74-156 18-88 (311)
388 PRK09389 (R)-citramalate synth 47.9 2.6E+02 0.0056 26.8 13.2 15 82-96 209-223 (488)
389 cd07945 DRE_TIM_CMS Leptospira 47.8 1.9E+02 0.0042 25.3 13.3 121 18-155 115-250 (280)
390 PRK03692 putative UDP-N-acetyl 47.2 1.8E+02 0.004 24.9 9.1 79 16-99 90-172 (243)
391 COG1902 NemA NADH:flavin oxido 47.0 1.8E+02 0.0039 26.6 9.3 19 11-29 135-153 (363)
392 TIGR01457 HAD-SF-IIA-hyp2 HAD- 46.9 44 0.00095 28.6 5.2 51 32-86 8-60 (249)
393 PRK09856 fructoselysine 3-epim 46.9 1.9E+02 0.004 24.8 12.3 42 20-62 15-62 (275)
394 CHL00200 trpA tryptophan synth 46.9 1.6E+02 0.0034 25.7 8.6 95 64-163 18-129 (263)
395 TIGR02434 CobF precorrin-6A sy 46.8 61 0.0013 27.9 6.0 52 19-71 90-143 (249)
396 cd06565 GH20_GcnA-like Glycosy 46.7 65 0.0014 28.5 6.4 53 11-65 10-77 (301)
397 PRK15452 putative protease; Pr 46.5 1.5E+02 0.0033 27.9 9.0 77 75-155 14-91 (443)
398 PRK11572 copper homeostasis pr 46.2 1.2E+02 0.0025 26.3 7.4 67 22-91 132-198 (248)
399 COG2759 MIS1 Formyltetrahydrof 46.2 72 0.0016 30.0 6.5 52 108-160 354-405 (554)
400 PRK08185 hypothetical protein; 46.1 2.1E+02 0.0045 25.2 17.8 137 13-159 19-168 (283)
401 cd08205 RuBisCO_IV_RLP Ribulos 46.1 1.7E+02 0.0037 26.8 9.1 84 11-95 139-234 (367)
402 PRK10415 tRNA-dihydrouridine s 45.9 89 0.0019 28.0 7.2 71 18-91 149-224 (321)
403 COG0826 Collagenase and relate 45.8 1.3E+02 0.0028 27.4 8.2 75 75-155 17-94 (347)
404 PRK02261 methylaspartate mutas 45.7 1.4E+02 0.003 23.0 7.8 46 48-94 43-92 (137)
405 PRK08207 coproporphyrinogen II 45.7 1.9E+02 0.0041 27.7 9.6 108 13-132 230-358 (488)
406 PLN02591 tryptophan synthase 45.5 2E+02 0.0043 24.8 11.1 87 64-155 5-108 (250)
407 PF01261 AP_endonuc_2: Xylose 45.1 1E+02 0.0022 24.8 7.1 72 77-156 1-87 (213)
408 TIGR01459 HAD-SF-IIA-hyp4 HAD- 45.0 29 0.00063 29.5 3.8 48 35-86 18-66 (242)
409 cd02809 alpha_hydroxyacid_oxid 44.9 1.6E+02 0.0036 25.9 8.7 76 16-94 127-203 (299)
410 PRK13111 trpA tryptophan synth 44.9 2.1E+02 0.0045 24.8 13.3 92 64-159 15-123 (258)
411 PRK10444 UMP phosphatase; Prov 44.9 43 0.00094 28.7 4.8 50 33-86 9-60 (248)
412 KOG2882 p-Nitrophenyl phosphat 44.9 62 0.0013 28.6 5.7 66 18-87 13-82 (306)
413 COG1902 NemA NADH:flavin oxido 44.8 1.4E+02 0.0031 27.3 8.3 76 14-91 233-318 (363)
414 cd00477 FTHFS Formyltetrahydro 44.6 80 0.0017 30.2 6.7 50 109-159 342-391 (524)
415 COG0159 TrpA Tryptophan syntha 44.6 2.1E+02 0.0046 24.9 12.7 92 64-156 20-125 (265)
416 KOG3935 Predicted glycerate ki 44.4 32 0.00069 30.7 3.8 59 13-71 306-375 (446)
417 PLN02446 (5-phosphoribosyl)-5- 44.4 1E+02 0.0022 26.8 6.9 62 23-92 48-112 (262)
418 cd03321 mandelate_racemase Man 44.3 2.4E+02 0.0053 25.5 11.3 97 12-127 194-291 (355)
419 PRK10605 N-ethylmaleimide redu 44.2 1.7E+02 0.0037 26.7 8.8 81 12-92 146-270 (362)
420 COG4015 Predicted dinucleotide 44.2 34 0.00074 27.4 3.6 36 32-72 109-144 (217)
421 PLN02495 oxidoreductase, actin 44.1 1.4E+02 0.003 27.6 8.2 75 15-90 124-213 (385)
422 PRK05286 dihydroorotate dehydr 44.0 2.5E+02 0.0053 25.4 10.6 69 84-155 169-240 (344)
423 PF14488 DUF4434: Domain of un 43.9 98 0.0021 24.8 6.4 76 12-101 14-93 (166)
424 PRK13210 putative L-xylulose 5 43.8 2.1E+02 0.0045 24.6 13.0 110 13-132 14-154 (284)
425 PRK05718 keto-hydroxyglutarate 43.7 1.9E+02 0.0042 24.2 9.2 76 14-98 23-99 (212)
426 cd02911 arch_FMN Archeal FMN-b 43.4 1.3E+02 0.0027 25.6 7.4 66 20-91 154-220 (233)
427 cd01973 Nitrogenase_VFe_beta_l 43.2 1.3E+02 0.0028 28.5 8.0 114 36-159 66-194 (454)
428 TIGR01037 pyrD_sub1_fam dihydr 43.0 2.2E+02 0.0047 25.0 9.2 76 15-91 100-189 (300)
429 PF13344 Hydrolase_6: Haloacid 42.4 63 0.0014 23.4 4.7 57 89-156 2-58 (101)
430 PF00590 TP_methylase: Tetrapy 42.3 93 0.002 25.4 6.4 57 17-74 60-119 (210)
431 cd03174 DRE_TIM_metallolyase D 42.2 2.1E+02 0.0047 24.2 15.6 119 48-187 117-245 (265)
432 PRK08005 epimerase; Validated 42.2 2.1E+02 0.0045 24.0 16.9 113 16-149 11-129 (210)
433 COG0502 BioB Biotin synthase a 42.2 1.6E+02 0.0034 26.7 7.9 83 2-86 233-318 (335)
434 PRK12857 fructose-1,6-bisphosp 42.2 2.4E+02 0.0053 24.8 14.9 164 13-188 24-201 (284)
435 PRK07945 hypothetical protein; 42.1 97 0.0021 28.0 6.8 73 40-124 239-314 (335)
436 PRK11267 biopolymer transport 42.0 1.5E+02 0.0033 22.8 7.1 17 75-91 117-133 (141)
437 PTZ00124 adenosine deaminase; 41.9 2.8E+02 0.006 25.4 9.9 79 13-94 172-256 (362)
438 cd03329 MR_like_4 Mandelate ra 41.6 2.7E+02 0.0059 25.3 11.6 96 13-128 198-296 (368)
439 COG0848 ExbD Biopolymer transp 41.5 1.2E+02 0.0026 23.5 6.4 56 13-69 77-133 (137)
440 TIGR02804 ExbD_2 TonB system t 41.5 1.4E+02 0.0031 22.2 6.7 28 64-91 87-118 (121)
441 TIGR01463 mtaA_cmuA methyltran 41.3 2.6E+02 0.0057 25.0 14.0 68 22-94 184-263 (340)
442 TIGR00677 fadh2_euk methylenet 41.1 2.5E+02 0.0054 24.6 13.9 122 13-149 69-212 (281)
443 PRK06252 methylcobalamin:coenz 41.0 2.6E+02 0.0057 24.9 13.3 64 24-94 186-261 (339)
444 TIGR01037 pyrD_sub1_fam dihydr 40.9 1.6E+02 0.0034 25.9 8.0 21 18-38 169-189 (300)
445 smart00642 Aamy Alpha-amylase 40.9 1.3E+02 0.0028 24.0 6.7 51 106-156 15-86 (166)
446 PRK10415 tRNA-dihydrouridine s 40.8 2.2E+02 0.0048 25.5 8.9 76 15-91 74-169 (321)
447 TIGR01467 cobI_cbiL precorrin- 40.8 1.5E+02 0.0032 24.9 7.4 46 27-74 86-131 (230)
448 TIGR02247 HAD-1A3-hyp Epoxide 40.7 2E+02 0.0043 23.4 8.2 30 41-72 92-121 (211)
449 cd03310 CIMS_like CIMS - Cobal 40.6 2.6E+02 0.0056 24.7 13.5 111 22-153 155-285 (321)
450 cd03325 D-galactonate_dehydrat 40.5 2.8E+02 0.0061 25.1 11.0 99 13-129 185-283 (352)
451 TIGR02617 tnaA_trp_ase tryptop 40.4 1.2E+02 0.0026 28.8 7.1 82 10-93 162-265 (467)
452 cd00739 DHPS DHPS subgroup of 40.2 2.4E+02 0.0053 24.3 10.6 84 7-95 13-106 (257)
453 PRK12344 putative alpha-isopro 40.0 3.5E+02 0.0077 26.1 12.9 16 136-151 264-279 (524)
454 COG2221 DsrA Dissimilatory sul 40.0 85 0.0018 28.0 5.8 52 9-61 36-92 (317)
455 cd03319 L-Ala-DL-Glu_epimerase 39.7 2.7E+02 0.0058 24.6 12.0 100 12-131 185-286 (316)
456 cd02072 Glm_B12_BD B12 binding 39.4 1.7E+02 0.0038 22.3 7.8 9 78-86 102-110 (128)
457 TIGR00742 yjbN tRNA dihydrouri 39.1 2.6E+02 0.0056 25.0 9.0 76 15-91 64-161 (318)
458 cd00429 RPE Ribulose-5-phospha 38.9 2.1E+02 0.0045 23.3 8.0 63 22-90 71-133 (211)
459 PRK10550 tRNA-dihydrouridine s 38.6 2.9E+02 0.0062 24.7 9.4 75 16-91 73-168 (312)
460 cd04731 HisF The cyclase subun 38.6 1.6E+02 0.0034 24.9 7.4 73 16-91 147-223 (243)
461 COG1212 KdsB CMP-2-keto-3-deox 38.5 54 0.0012 27.8 4.2 39 34-76 95-134 (247)
462 PRK07709 fructose-bisphosphate 38.5 2.8E+02 0.006 24.5 15.7 164 13-188 24-202 (285)
463 TIGR03234 OH-pyruv-isom hydrox 38.5 2.4E+02 0.0053 23.8 8.8 77 17-95 83-179 (254)
464 PF03460 NIR_SIR_ferr: Nitrite 38.2 22 0.00048 23.5 1.6 49 9-57 15-68 (69)
465 PF12646 DUF3783: Domain of un 38.1 1.1E+02 0.0024 19.7 6.4 25 132-156 4-28 (58)
466 TIGR01501 MthylAspMutase methy 38.0 1.9E+02 0.0041 22.3 7.0 72 10-87 34-113 (134)
467 COG0560 SerB Phosphoserine pho 38.0 2E+02 0.0043 24.0 7.7 94 42-142 76-175 (212)
468 PRK05581 ribulose-phosphate 3- 37.9 2.1E+02 0.0046 23.6 7.9 64 21-90 74-137 (220)
469 COG2248 Predicted hydrolase (m 37.7 2.5E+02 0.0054 24.5 8.0 85 70-157 187-273 (304)
470 PRK10637 cysG siroheme synthas 37.7 1.1E+02 0.0023 29.0 6.7 54 15-70 277-330 (457)
471 cd00019 AP2Ec AP endonuclease 37.7 1.6E+02 0.0036 25.3 7.5 22 17-38 84-105 (279)
472 PRK13507 formate--tetrahydrofo 37.7 1.2E+02 0.0025 29.5 6.6 49 109-158 387-435 (587)
473 cd00308 enolase_like Enolase-s 37.4 2.4E+02 0.0053 23.5 11.6 102 11-131 101-203 (229)
474 cd03329 MR_like_4 Mandelate ra 37.3 3.2E+02 0.007 24.8 11.7 138 16-157 143-296 (368)
475 TIGR01656 Histidinol-ppas hist 37.2 1.1E+02 0.0025 23.5 5.8 26 44-71 28-53 (147)
476 PRK11815 tRNA-dihydrouridine s 37.1 2.9E+02 0.0062 24.9 9.0 76 15-91 74-171 (333)
477 PRK08123 histidinol-phosphatas 36.9 1.2E+02 0.0027 26.2 6.5 61 47-115 198-267 (270)
478 PF01268 FTHFS: Formate--tetra 36.7 67 0.0014 31.0 5.0 48 109-157 357-404 (557)
479 COG0710 AroD 3-dehydroquinate 36.6 2.7E+02 0.0058 23.7 13.4 53 88-151 119-171 (231)
480 PRK09989 hypothetical protein; 36.6 2.7E+02 0.0058 23.7 11.3 138 17-165 84-245 (258)
481 PRK06740 histidinol-phosphatas 36.2 2.4E+02 0.0052 25.4 8.4 68 46-124 239-315 (331)
482 PLN03228 methylthioalkylmalate 36.1 4E+02 0.0087 25.6 12.6 52 22-75 213-268 (503)
483 PRK07709 fructose-bisphosphate 36.1 2.4E+02 0.0053 24.8 8.1 73 14-94 155-236 (285)
484 COG3033 TnaA Tryptophanase [Am 36.0 1.1E+02 0.0024 28.1 5.9 61 11-73 165-236 (471)
485 PF14871 GHL6: Hypothetical gl 36.0 2E+02 0.0043 22.1 7.5 68 22-95 4-87 (132)
486 cd02072 Glm_B12_BD B12 binding 36.0 1.6E+02 0.0035 22.5 6.2 61 17-80 64-126 (128)
487 PRK05286 dihydroorotate dehydr 35.8 83 0.0018 28.5 5.4 98 15-121 222-341 (344)
488 PRK01060 endonuclease IV; Prov 35.8 2.8E+02 0.0062 23.8 12.2 125 20-150 14-169 (281)
489 PRK07259 dihydroorotate dehydr 35.6 2.3E+02 0.005 24.9 8.1 20 18-37 169-188 (301)
490 cd04731 HisF The cyclase subun 35.6 2E+02 0.0043 24.3 7.5 71 19-91 28-100 (243)
491 PF01207 Dus: Dihydrouridine s 35.4 1.1E+02 0.0023 27.3 5.9 73 16-91 136-213 (309)
492 PRK08609 hypothetical protein; 35.4 3.6E+02 0.0079 26.3 10.0 69 44-124 477-548 (570)
493 TIGR01858 tag_bisphos_ald clas 35.4 1.6E+02 0.0034 26.0 6.8 72 16-91 154-230 (282)
494 COG0358 DnaG DNA primase (bact 35.3 2.4E+02 0.0052 27.5 8.8 72 48-135 256-328 (568)
495 COG0813 DeoD Purine-nucleoside 35.3 2.8E+02 0.006 23.5 8.6 103 40-154 66-176 (236)
496 COG0854 PdxJ Pyridoxal phospha 35.3 2.8E+02 0.0061 23.5 8.5 49 39-91 102-152 (243)
497 cd04738 DHOD_2_like Dihydrooro 35.1 1.8E+02 0.0039 26.1 7.4 25 15-39 213-237 (327)
498 PRK07114 keto-hydroxyglutarate 35.1 2.8E+02 0.006 23.5 9.1 80 15-99 24-104 (222)
499 TIGR00423 radical SAM domain p 35.1 90 0.0019 27.7 5.4 68 77-155 45-119 (309)
500 cd02810 DHOD_DHPD_FMN Dihydroo 34.9 3E+02 0.0066 23.8 12.7 88 64-156 101-192 (289)
No 1
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=100.00 E-value=7e-50 Score=361.70 Aligned_cols=298 Identities=84% Similarity=1.345 Sum_probs=264.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHH
Q 022377 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKL 80 (298)
Q Consensus 1 ~~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l 80 (298)
||.++.+..++...|+.|++.++++.+.+.|+..|.|+|||||+++++.++++++++..++..+.|+|||+++++.+.+|
T Consensus 76 ~~~~~~~~~~~~~~ls~eei~~~i~~~~~~Gv~~I~~tGGEPllr~dl~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L 155 (373)
T PLN02951 76 MPEEGVELTPKSHLLSQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRL 155 (373)
T ss_pred CCCcCCCCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcchhhHHHHHHHHHhcCCCceEEEeeCcchHHHHHHHH
Confidence 45666665555677999999999999999999999999999999999999999999865775589999999998889999
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEe
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIE 160 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~ 160 (298)
+++|++.|+||||+.+++.|+.+++.+++++++++|+.+++.|+.++.+++|+++|.|++++.++++++.++|+.+++++
T Consensus 156 ~~aGld~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi~vr~ie 235 (373)
T PLN02951 156 KEAGLTSLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPINVRFIE 235 (373)
T ss_pred HhCCCCeEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCCeEEEEE
Confidence 99999999999999999999999988889999999999999997569999999999999999999999999999999999
Q ss_pred eecCCCCCCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCccccCCCCeEEEeccccee
Q 022377 161 FMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240 (298)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~I~~dG~v~ 240 (298)
++|+++..|.....++..++++.+.+.|+.+.........++.+|.++++.+.+++|.+.+.+||++|++++|++||.+.
T Consensus 236 ~mP~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~a~~y~~~~~~g~ig~I~~~s~~FC~~CnRlRltadG~l~ 315 (373)
T PLN02951 236 FMPFDGNVWNVKKLVPYAEMMDRIEQRFPSLKRLQDHPTDTAKNFRIDGHCGSVSFITSMTEHFCAGCNRLRLLADGNLK 315 (373)
T ss_pred cccCCCCccccccCCCHHHHHHHHHHhcCcccccCCCCCCCceEEEECCCCeEEEEEcCCcccccccCCeEEEccCCcEE
Confidence 99998877776677899999999999886444443333467889999988899999999999999999999999999999
Q ss_pred ecCCCCCCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCccccccccccccccccC
Q 022377 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 241 pC~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
||.+.+.+++|+..+++|.+++.+.+.|+.++++||+.|+..........|.|+.+||
T Consensus 316 ~CL~~~~~~dl~~~l~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~m~~iGG 373 (373)
T PLN02951 316 VCLFGPSEVSLRDALRSGADDDELREIIGAAVKRKKAAHAGMFDLAKTANRPMIHIGG 373 (373)
T ss_pred ecCCCCCCcChHHHHhcCCCHHHHHHHHHHHHHhccccccccccccCCCcccccccCC
Confidence 9999999999999999998899999999999999999997432222223599999998
No 2
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=100.00 E-value=4.2e-50 Score=347.78 Aligned_cols=293 Identities=44% Similarity=0.725 Sum_probs=268.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHH
Q 022377 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKL 80 (298)
Q Consensus 1 ~~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l 80 (298)
||+..+.+.++...||+||+.++++.+.+.|+..|.||||||||++|+.+|++.+++. ++..++++|||++|.+....|
T Consensus 29 m~eg~~~~~~~~~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~-~~~~islTTNG~~L~~~a~~L 107 (322)
T COG2896 29 MPEGPLAFLPKEELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARL-GIRDLSLTTNGVLLARRAADL 107 (322)
T ss_pred CCCCCcccCcccccCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhc-ccceEEEecchhhHHHHHHHH
Confidence 7888799999999999999999999999999999999999999999999999999986 777899999999999999999
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEe
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIE 160 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~ 160 (298)
+++|++.|+||||+.+++.|.++++.+.+++|+++|+.+.++|+.+|++|+|+++|.|++|+.++++|+.++|+.+++++
T Consensus 108 k~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~~~~~~lrfIE 187 (322)
T COG2896 108 KEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAKERGAQLRFIE 187 (322)
T ss_pred HHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHhhcCCceEEEE
Confidence 99999999999999999999999998889999999999999999779999999999999999999999999999999999
Q ss_pred eecCCC-CCCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCccccCCCCeEEEecccce
Q 022377 161 FMPFDG-NVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNF 239 (298)
Q Consensus 161 ~~p~~~-~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~I~~dG~v 239 (298)
+||.+. ..|.....++..++.+.+.+.+ .+.+.......+..+|..++.. .++++.+.++.||+.|+++++++||.+
T Consensus 188 ~m~~g~~~~~~~~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~a~~~~~~~~~-~ig~I~p~~~~FC~~CnR~Rlt~dGkl 265 (322)
T COG2896 188 LMPLGEGNSWRLDKYLSLDEILRKLEERA-TLLPVRKRLHGRAKYFIHPDGG-EIGFIAPVSNPFCATCNRLRLTADGKL 265 (322)
T ss_pred EeecCcccchhhhccccHHHHHHHHHhhc-cccccccccCCCceEEEeCCCc-EEEEEcCCCchhhhhcceeeeccCCeE
Confidence 999985 5576667899999999999966 4444443555677888887754 899999999999999999999999999
Q ss_pred eecCCCCCCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCccccccccccccccccC
Q 022377 240 KVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 240 ~pC~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
+||.+.+..+++++.++++...+.+.+.|+.++++|+++|.+...-.. -+.|+.+||
T Consensus 266 ~~CL~~~~~~dlr~~lr~~~~~~~l~~~~~~a~~~r~~~~~~~~~~~~--~~~m~~~gg 322 (322)
T COG2896 266 KPCLFREDGIDLRDLLRSGASDEELVEAIREALRRRPPYHKLHRGNTG--RREMSYIGG 322 (322)
T ss_pred EeccCCCcCcchhhhhcccccHHHHHHHHHHHHHhCCCCccccccccC--ceeeeecCC
Confidence 999999999999999998887789999999999999999998877333 899999998
No 3
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=100.00 E-value=1.1e-49 Score=356.73 Aligned_cols=292 Identities=37% Similarity=0.553 Sum_probs=258.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCC
Q 022377 6 VDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL 85 (298)
Q Consensus 6 ~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~ 85 (298)
..+.++...|+.|++.++++++.+.|+..|.|+|||||+++++.++++++++..++..+.|+|||+++++.++.|+++|+
T Consensus 36 ~~~~~~~~~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl 115 (329)
T PRK13361 36 PCFLPRDQVLSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGL 115 (329)
T ss_pred CCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCC
Confidence 44556677899999999999999999999999999999999999999999886455348999999999889999999999
Q ss_pred CeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeecCC
Q 022377 86 TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFD 165 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p~~ 165 (298)
+.|+||||+.+++.|+++++.++|++++++|+.++++|+.++.+++|++++.|.+++.++++++.++|+++++++++|.+
T Consensus 116 ~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~~~ie~mP~g 195 (329)
T PRK13361 116 KRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDIAFIEEMPLG 195 (329)
T ss_pred CeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeEEEEecccCC
Confidence 99999999999999999999888999999999999999867999999998899999999999999999999999999998
Q ss_pred CC-CCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCccccCCCCeEEEecccceeecCC
Q 022377 166 GN-VWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLF 244 (298)
Q Consensus 166 ~~-~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~I~~dG~v~pC~~ 244 (298)
.. .|.....++.+++.+.+.+.++ +.........++.+|.++++.+.+++|++.+.+||+.|++++|++||.++||.+
T Consensus 196 ~~~~~~~~~~~~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ig~I~~~s~~fC~~Cnr~rlt~~G~l~~Cl~ 274 (329)
T PRK13361 196 EIDERRRARHCSSDEVRAIIETRYP-LTPSNKRTGGPARYYTMADSPIHIGFISPHSHNFCHECNRVRVTAEGQLLLCLG 274 (329)
T ss_pred CccchhhccCcCHHHHHHHHHHhCC-cccCCCCCCCCCeEEEECCCCeEEEEEcCCCccccccCCeEEEccCCcEEecCC
Confidence 64 4656677899999999988874 332222234567889899888999999999999999999999999999999999
Q ss_pred CCCCCCcchHhhcCCCHH-HHHHHHHHHHHhhhhhccCccccccccccccccccC
Q 022377 245 GPSEVSLRDPLRQNASDD-ELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
...+++|+..+++|.+.+ .+.+.|+.++++||+.|++..+......|.|+.+||
T Consensus 275 ~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~m~~iGG 329 (329)
T PRK13361 275 NEHASDLRSILREGPGDIERLKAAILAAINLKPKGHHFDDNGQVQILRFMNATGG 329 (329)
T ss_pred CCCCcchHHHHhcCCCcHHHHHHHHHHHHHcCccccCcccccCCCCcccccccCC
Confidence 999999999999887774 799999999999999998764333334699999998
No 4
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=100.00 E-value=1.1e-46 Score=338.91 Aligned_cols=292 Identities=43% Similarity=0.722 Sum_probs=254.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCC
Q 022377 6 VDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL 85 (298)
Q Consensus 6 ~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~ 85 (298)
.++.++...|+.+++.++++.+.+.|+..|.|+|||||+++++.++++++++..++..+.|+|||+++++.++.|+++|+
T Consensus 34 ~~~~~~~~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl 113 (334)
T TIGR02666 34 LDFLPKEELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGL 113 (334)
T ss_pred CCcCCccCCCCHHHHHHHHHHHHHCCCCEEEEECccccccCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCC
Confidence 34455678899999999999999999999999999999999999999999885577349999999999889999999999
Q ss_pred CeEEEecCCCCHHhhhhhcC-CCcHHHHHHHHHHHHHcCCCC-EEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeec
Q 022377 86 TSVNISLDTLVPAKFEFLTR-RKGHEKVMESINAAIEVGYNP-VKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMP 163 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~-~~~~~~v~~~i~~l~~~g~~~-v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p 163 (298)
+.|+||+|+.+++.|+.+++ .++|++++++|+.++++|+ . +.+++|+++|.|++++.++++++.++|+.+++++++|
T Consensus 114 ~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~-~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~~~~ie~mp 192 (334)
T TIGR02666 114 KRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGL-EPVKLNTVVMRGVNDDEIVDLAEFAKERGVTLRFIELMP 192 (334)
T ss_pred CeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCC-CcEEEEEEEeCCCCHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 99999999999999999985 4579999999999999999 6 9999999988999999999999999999999999999
Q ss_pred CCCC-CCcccCCCCHHHHHHHHHHhCCCceecCC-CCCCCcceEE--eCCCCeeEEEEeCCCccccCCCCeEEEecccce
Q 022377 164 FDGN-VWNVKKLVPYAEMLDTVVKKFPGLRRMQD-HPTETAKNFK--IDGHHGNVSFITSMTEHFCAGCNRLRLLADGNF 239 (298)
Q Consensus 164 ~~~~-~~~~~~~~~~~e~~~~i~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~C~~~~~~~I~~dG~v 239 (298)
.+.. .|.....++.+++++.+.+.++.+..... ....+..+|. +++..+.++++++.+.++|+.|++++|+|||.+
T Consensus 193 ~~~~~~~~~~~~~~~~ei~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~i~~~s~~fC~~cnr~r~t~dG~l 272 (334)
T TIGR02666 193 LGEGNGWREKKFVSADEILERLEQAFGPLEPVPSPRGNGPAPAYRWRLPGGKGRIGFISPVSDPFCGTCNRLRLTADGKL 272 (334)
T ss_pred CCCCccchhhcccCHHHHHHHHHhhcccceecCcCCCCCCceeeeeecCCCCeEEEEEccCCcccccccCEEEEccCCCE
Confidence 8765 46666678899999999988754443211 2234566776 777778999999999999999999999999999
Q ss_pred eecCCCCCCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCcccccc---ccccccccccC
Q 022377 240 KVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAK---TANRPMIHIGG 298 (298)
Q Consensus 240 ~pC~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 298 (298)
+||.+.+.+++|++.+++|.+++.+.+.|+.++++||+.|++.-..+. ...|.|+.+||
T Consensus 273 ~~Cl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~m~~igg 334 (334)
T TIGR02666 273 RLCLFADDGVDLRPLLRGGASDALLEAIIQAILQKKPEGHSFLRFTSPANKRRKRAMSQIGG 334 (334)
T ss_pred EEccCCCCCCchHHHHhcCCCHHHHHHHHHHHHHcCCcccCcccccccccCCCcccccccCC
Confidence 999999999999999998888999999999999999999987521111 12589999998
No 5
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=100.00 E-value=4.2e-46 Score=334.71 Aligned_cols=290 Identities=43% Similarity=0.681 Sum_probs=255.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCC
Q 022377 7 DLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLT 86 (298)
Q Consensus 7 ~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~ 86 (298)
.+.++...|+.+++.++++.+.+.|+..|.|+|||||+++++.++++++++..+...+.++|||+++++.++.|.++|++
T Consensus 41 ~~~~~~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~ 120 (331)
T PRK00164 41 PFLPKEELLSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLD 120 (331)
T ss_pred CCCCccccCCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCC
Confidence 34566788999999999999999999999999999999999999999998853443599999999998889999999999
Q ss_pred eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeecCCC
Q 022377 87 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDG 166 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p~~~ 166 (298)
.|+||||+.+++.|+.+++..++++++++|+.+++.|+.++.+++|+++|.|.+++.++++++.++|+.+++++++|.+.
T Consensus 121 ~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv~v~~ie~~p~~~ 200 (331)
T PRK00164 121 RVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGIQLRFIELMPTGE 200 (331)
T ss_pred EEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCCeEEEEEeeECCC
Confidence 99999999999999999998889999999999999987579999999988999999999999999999999999999876
Q ss_pred C-CCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCccccCCCCeEEEecccceeecCCC
Q 022377 167 N-VWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFG 245 (298)
Q Consensus 167 ~-~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~I~~dG~v~pC~~~ 245 (298)
. .|......+.+++.+.+.+......... ....+..+|.+++..+.++++.+.+.++|+.|++++|++||.++||.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ig~i~~~s~~fC~~c~r~r~t~dG~l~~Cl~~ 279 (331)
T PRK00164 201 GNEWFRKHHLSGAEIRARLAERGWTLQPRA-RSGGPAQYFRHPDYGGEIGLIAPVTHDFCASCNRLRLTADGKLHLCLFA 279 (331)
T ss_pred CcchhhhcCCCHHHHHHHHHhccCcccccC-CCCCCCEEEEECCCCeEEEEEeCCCCcccccCCeEEEcCCCcEEEcCCC
Confidence 4 5766677889999999988721232222 2246788888888888999999999999989999999999999999999
Q ss_pred CCCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCccccccccccccccccC
Q 022377 246 PSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 246 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
+.+++|+..+++|..++.+.+.|+.++.+||+.|++.-. .....|.|+.+||
T Consensus 280 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~k~~~~~~~~~-~~~~~~~m~~igg 331 (331)
T PRK00164 280 EDGVDLRDLLRSGADDEELAAAIREALQNKPEGHGLHDG-NTGPTRHMSYIGG 331 (331)
T ss_pred CCCcCHHHHHhcCCCHHHHHHHHHHHHHcCccccCcccc-cCCCcccccccCC
Confidence 999999999998888999999999999999999987532 2334699999998
No 6
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.6e-44 Score=293.34 Aligned_cols=295 Identities=66% Similarity=1.035 Sum_probs=282.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHH
Q 022377 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKL 80 (298)
Q Consensus 1 ~~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l 80 (298)
||++|...+++++.++.+++.++.+.+...++..+.|+||||+.++|+.+++..+.+..+++.+.|+|||..+.+.+-++
T Consensus 29 Mpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr~di~~i~~g~~~l~gLks~~ITtng~vl~R~lp~l 108 (323)
T KOG2876|consen 29 MPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIRQDIVPIVAGLSSLPGLKSIGITTNGLVLARLLPQL 108 (323)
T ss_pred chhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCcccccccchhhhhhcccchhhhceeccchhhhhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999988998899999999888899999
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEe
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIE 160 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~ 160 (298)
.+++++.+++|+|...++.+..+.++.+|.+++..++...+.|..++.++++++++.|.+++-+++.+-....+++++++
T Consensus 109 hkaglssiNiSldtl~~aKfa~~~rr~g~v~V~~~iq~a~~lgy~pvkvn~v~~k~~n~~ev~Dfv~~tr~~p~DVrfIe 188 (323)
T KOG2876|consen 109 HKAGLSSINISLDTLVRAKFAKLTRRKGFVKVWASIQLAIELGYNPVKVNCVVMKGLNEDEVFDFVLLTRMRPLDVRFIE 188 (323)
T ss_pred HhhcccchhhhhhhhhHHHHHHHhhhccHHHHHHHHhHHhhhCCCCcceeeEEEeccCCCcccceeeecCCCCcceEEEE
Confidence 99999999999999999999999999999999999999999999889999999999999999999998888889999999
Q ss_pred eecCCCCCCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCccccCCCCeEEEeccccee
Q 022377 161 FMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFK 240 (298)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~I~~dG~v~ 240 (298)
|||+.+..|.....+++.+.++.+.+.++...++...+....+-|.+++..+.++++.....++|+.|+++.+++||++-
T Consensus 189 ~mpf~gn~~~t~~lIpy~e~l~l~~~~~d~~~~l~~e~s~T~Ka~~i~g~~gqvsfitsm~~hfC~tcnrlr~~aDgnlk 268 (323)
T KOG2876|consen 189 FMPFDGNKWNTKSLIPYKEMLDLIVKPWDFSVRLPDEPSDTAKAYKIDGFQGQVSFITSMSEHFCGTCNRLRITADGNLK 268 (323)
T ss_pred ecccCCCcccccccccHHHHHHHHhccCchhhcCCCCCCccccccccccccceEEeehhhHHHHHhhhhhheEeccCcEE
Confidence 99999999999999999999999999998888888888888899999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCccccccccccccccccC
Q 022377 241 VCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 241 pC~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
-|.+++.++++++.++.|.+++.|.+++..|+.+|...|. +....++|||+++||
T Consensus 269 vcl~G~Se~slRd~~r~~~s~e~l~~~i~~av~~kk~~ha---~~~~~~~~p~~~~~~ 323 (323)
T KOG2876|consen 269 VCLFGNSEVSLRDRLRCGASDEQLSEIIGAAVGRKKAQHA---PLSPLANRPMILIGG 323 (323)
T ss_pred EeecCCccchhhhhhhcCCCHHHHHHHHHHHhhhhhhhcc---cccCCCCCCeeccCC
Confidence 9999999999999999999999999999999999999999 778999999999997
No 7
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=100.00 E-value=1.6e-40 Score=295.02 Aligned_cols=262 Identities=37% Similarity=0.565 Sum_probs=228.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEe
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iS 91 (298)
...|+.|++.++++.+...|+..|.|+|||||+++++.++++++++. ++..++++|||+++++.+..+.++|++.|+||
T Consensus 37 ~~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~iv~~l~~~-g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~iS 115 (302)
T TIGR02668 37 GNELSPEEIERIVRVASEFGVRKVKITGGEPLLRKDLIEIIRRIKDY-GIKDVSMTTNGILLEKLAKKLKEAGLDRVNVS 115 (302)
T ss_pred cCcCCHHHHHHHHHHHHHcCCCEEEEECcccccccCHHHHHHHHHhC-CCceEEEEcCchHHHHHHHHHHHCCCCEEEEE
Confidence 46799999999999999999999999999999999999999999885 77459999999999888999999999999999
Q ss_pred cCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeecCCCC-CCc
Q 022377 92 LDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGN-VWN 170 (298)
Q Consensus 92 ldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p~~~~-~~~ 170 (298)
+|+.+++.|+.+++.+++++++++|+.++++|+.++.+++|+++|.|.+++.++++++.++|+.+++++++|.+.. .|.
T Consensus 116 ld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~~~~~~g~~~~~ie~~p~~~~~~~~ 195 (302)
T TIGR02668 116 LDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVEFAAEGGAILQLIELMPPGEGEKEF 195 (302)
T ss_pred ecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEEEeECCCCccch
Confidence 9999999999999988899999999999999983499999999999999999999999999999999999998754 344
Q ss_pred ccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCc-cccCCCCeEEEecccceeecCCCCC-C
Q 022377 171 VKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTE-HFCAGCNRLRLLADGNFKVCLFGPS-E 248 (298)
Q Consensus 171 ~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~C~~~~~~~I~~dG~v~pC~~~~~-~ 248 (298)
.....+..++.+.+.+.+...... .... ..+|.+++. +.++++.+.+. .+|++|++++|++||.++||.+.+. +
T Consensus 196 ~~~~~~~~~i~~~l~~~~~~~~~~--~~~~-~~~~~~~~~-~~~g~i~~~~~~~fC~~c~r~r~t~dG~l~~Cl~~~~~~ 271 (302)
T TIGR02668 196 KKYHEDIDPIEEELEKMADRVRTR--RMHN-RPKYFIPGG-VEVEVVKPMDNPVFCAHCTRLRLTSDGKLKTCLLRDDNL 271 (302)
T ss_pred hhceecHHHHHHHHHHhccccccc--CCCC-CcEEEeCCC-eEEEEECccCCCCccccCCeEEEcCCCCEEECCCCCCCC
Confidence 445577888888888765322211 1112 455667764 78999999998 5999999999999999999999984 7
Q ss_pred CCcchHhhcCCCHHHHHHHHHHHHHhhhhhc
Q 022377 249 VSLRDPLRQNASDDELREIIGAAVKRKKAAH 279 (298)
Q Consensus 249 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (298)
++|++.+++|.+.+ +.+.++.+++.|+++.
T Consensus 272 ~~~~~~~~~~~~~~-~~~~~~~~~~~k~~~~ 301 (302)
T TIGR02668 272 VDILDALRNGEDDE-LREAFREAVARREPYF 301 (302)
T ss_pred cchHHHHhcCCcHH-HHHHHHHHHHcccccc
Confidence 99999999888777 9999999999999864
No 8
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=1.7e-34 Score=262.16 Aligned_cols=270 Identities=20% Similarity=0.255 Sum_probs=191.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeE
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSV 88 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v 88 (298)
.+..+|+.+++.++++++.+.|+..|.|+||||||++++.++++++++. ++. +.|+|||+++ ++.++.|.+.+++.|
T Consensus 32 ~~~~~l~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~ii~~~~~~-g~~-~~l~TNG~ll~~e~~~~L~~~g~~~v 109 (358)
T TIGR02109 32 RRKAELTTEEWTDVLTQAAELGVLQLHFSGGEPLARPDLVELVAHARRL-GLY-TNLITSGVGLTEARLDALADAGLDHV 109 (358)
T ss_pred cccCCCCHHHHHHHHHHHHhcCCcEEEEeCccccccccHHHHHHHHHHc-CCe-EEEEeCCccCCHHHHHHHHhCCCCEE
Confidence 3467899999999999999999999999999999999999999999984 885 9999999998 568899999999999
Q ss_pred EEecCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCC
Q 022377 89 NISLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDG 166 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~ 166 (298)
+|||||.++++|+++|+. ++|++++++++.++++|+ ++.+++|+++ .|.++++++++++.++|++ +.+....+.+.
T Consensus 110 ~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~-~v~v~~vv~~-~N~~~l~~~~~~~~~lg~~~i~~~~~~~~g~ 187 (358)
T TIGR02109 110 QLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGL-PLTLNFVIHR-HNIDQIPEIIELAIELGADRVELATTQYYGW 187 (358)
T ss_pred EEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCC-ceEEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEEeeeccCc
Confidence 999999999999999986 469999999999999999 9999999998 7999999999999999985 33333333333
Q ss_pred CCCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCcccc-CCCC--eEEEecccceeecC
Q 022377 167 NVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFC-AGCN--RLRLLADGNFKVCL 243 (298)
Q Consensus 167 ~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~~~~--~~~I~~dG~v~pC~ 243 (298)
.........+..+.++...+....+... ........+..+.+. ......| +++. .+.|+|||+|+||.
T Consensus 188 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~C~~~~g~~~~~I~~dG~V~pC~ 258 (358)
T TIGR02109 188 ALLNRAALMPTRAQLEEATRIVEEARER--LKGGLVIDYVVPDYY-------AERPKACMGGWGRVFLNVTPAGKVLPCH 258 (358)
T ss_pred hhcchhhcCCCHHHHHHHHHHHHHHHHH--hcCCCceEEeCCcch-------hhchHHHhcccCceEEEECCCCCEecCC
Confidence 2222212222222121111110000000 000001111111110 0112357 4443 58899999999998
Q ss_pred CCCC--CCCcchHhhcCCCHHHHHHHHHHH-HHhhhhhccCccccccccccccccccC
Q 022377 244 FGPS--EVSLRDPLRQNASDDELREIIGAA-VKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 244 ~~~~--~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
+... ++.+ +|+.+++|.+||.+. ..++-+.... ....|..|.+...|+|
T Consensus 259 ~~~~~~~~~~-----GNi~~~~l~eiw~~~~~~~~~r~~~~-~~~~C~~C~~~~~C~G 310 (358)
T TIGR02109 259 AAEQIPGLSF-----PNVREHSLSEIWYKSPAFNAYRGTDW-MPEPCRSCERKERDFG 310 (358)
T ss_pred ccccCCCccC-----CCccCCCHHHHhcCCHHHHhhcCccc-cCCCCCCcccccccCC
Confidence 7532 2444 556667899999863 4554443332 3458999999999965
No 9
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=100.00 E-value=3.3e-34 Score=262.01 Aligned_cols=270 Identities=23% Similarity=0.291 Sum_probs=192.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeE
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSV 88 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v 88 (298)
....+|+.+++.++++++.+.|+..|.|+||||||++++.++++++++. ++. +.|+|||+++ ++.++.|++.+++.|
T Consensus 41 ~~~~~~~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~~~~il~~~~~~-g~~-~~i~TNG~ll~~~~~~~L~~~g~~~v 118 (378)
T PRK05301 41 RHGAELSTEEWIRVLREARALGALQLHFSGGEPLLRKDLEELVAHAREL-GLY-TNLITSGVGLTEARLAALKDAGLDHI 118 (378)
T ss_pred cccCCCCHHHHHHHHHHHHHcCCcEEEEECCccCCchhHHHHHHHHHHc-CCc-EEEECCCccCCHHHHHHHHHcCCCEE
Confidence 3467899999999999999999999999999999999999999999984 885 9999999998 468899999999999
Q ss_pred EEecCCCCHHhhhhhcCCC-cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCC
Q 022377 89 NISLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDG 166 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~ 166 (298)
+|||||.++++|+.+|+.. +|++++++++.+++.|+ ++.+++|+++ .|.+++.++++++.++|++ +.+..+.+.+.
T Consensus 119 ~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~-~v~i~~vv~~-~N~~~i~~~~~~~~~lgv~~i~~~~~~~~g~ 196 (378)
T PRK05301 119 QLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGY-PLTLNAVIHR-HNIDQIPRIIELAVELGADRLELANTQYYGW 196 (378)
T ss_pred EEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCC-ceEEEEEeec-CCHHHHHHHHHHHHHcCCCEEEEecccccCh
Confidence 9999999999999999875 79999999999999999 9999999998 7999999999999999985 33333333332
Q ss_pred CCCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCcccc-CCC--CeEEEecccceeecC
Q 022377 167 NVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFC-AGC--NRLRLLADGNFKVCL 243 (298)
Q Consensus 167 ~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~~~--~~~~I~~dG~v~pC~ 243 (298)
........++..+.++.+.+....+... ........+..+.+. ......| +++ ..+.|+|||+|+||.
T Consensus 197 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~C~~g~g~~~~~I~~dG~V~pC~ 267 (378)
T PRK05301 197 ALLNRAALMPTREQLERAERIVEEARER--LGGRLKIDFVVPDYY-------EERPKACMGGWGRVFLNVTPDGTVLPCH 267 (378)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHHHHH--hcCCCceEEeCcchh-------hcccHhhhcccCceEEEECCCCCEEeCc
Confidence 2222222223222222221111000000 000001112222211 0112356 443 458899999999998
Q ss_pred CCCC--CCCcchHhhcCCCHHHHHHHHHHH-HHhhhhhccCccccccccccccccccC
Q 022377 244 FGPS--EVSLRDPLRQNASDDELREIIGAA-VKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 244 ~~~~--~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
+... ++.+ +|+.+++|.+||.++ ..++-+.... ....|..|.+...|+|
T Consensus 268 ~~~~~~~~~~-----GNi~~~sl~eIw~~s~~~~~~r~~~~-~~~~C~~C~~~~~C~G 319 (378)
T PRK05301 268 AARTIPGLAF-----PNVRDHSLAEIWYDSEAFNRFRGTDW-MPEPCRSCDEKEKDFG 319 (378)
T ss_pred chhhCCCCcC-----CCcCCCCHHHHhhcCHHHHHhhCccc-ccCCCCCCccccccCC
Confidence 7532 3444 455567899999853 3333332222 3457999999999966
No 10
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=99.97 E-value=5e-31 Score=234.67 Aligned_cols=253 Identities=19% Similarity=0.251 Sum_probs=184.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEe
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iS 91 (298)
..+|+.|++.+.++ +.|+..|.|+||||||||++.++++++++. ++. +.|+|||+++++.+..+.+++...|+||
T Consensus 56 ~~~ls~ee~~~~i~---e~g~~~V~i~GGEPLL~pdl~eiv~~~~~~-g~~-v~l~TNG~ll~~~~~~l~~~~~~~i~VS 130 (318)
T TIGR03470 56 KQRLSVEECLRAVD---ECGAPVVSIPGGEPLLHPEIDEIVRGLVAR-KKF-VYLCTNALLLEKKLDKFEPSPYLTFSVH 130 (318)
T ss_pred ccCCCHHHHHHHHH---HcCCCEEEEeCccccccccHHHHHHHHHHc-CCe-EEEecCceehHHHHHHHHhCCCcEEEEE
Confidence 45799999877766 457889999999999999999999999985 874 9999999999888899999888999999
Q ss_pred cCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCCCCC
Q 022377 92 LDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVW 169 (298)
Q Consensus 92 ldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~~~~ 169 (298)
|||. ++.|+.+++. +.|++++++|+.++++|+ ++.+++|++.+.|.+++.++++++.++|++ +.+....|++...
T Consensus 131 LDG~-~e~hd~~~~~~g~f~~~l~~I~~l~~~G~-~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~- 207 (318)
T TIGR03470 131 LDGL-REHHDASVCREGVFDRAVEAIREAKARGF-RVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAP- 207 (318)
T ss_pred EecC-chhhchhhcCCCcHHHHHHHHHHHHHCCC-cEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccccc-
Confidence 9997 5788888754 569999999999999999 999999987668999999999999999984 4444444444322
Q ss_pred cccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCccccCCCCeEEEecccceeecCCCCCCC
Q 022377 170 NVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLRLLADGNFKVCLFGPSEV 249 (298)
Q Consensus 170 ~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~I~~dG~v~pC~~~~~~~ 249 (298)
.....++.++..+.+.+.+. ... ...+.+......+.++.......|.++..+.|+|.|++.||.....++
T Consensus 208 ~~~~~l~~~e~~~~~~~~~~-~~~--------~~~~~~~~s~~~l~~l~g~~~~~C~~~~~~~~~~~G~~~pC~~~~~~~ 278 (318)
T TIGR03470 208 DQDHFLGRRQTKKLFREVLS-NGN--------GKRWRFNHSPLFLDFLAGNQQYECTPWGNPTRNVFGWQKPCYLLNDGY 278 (318)
T ss_pred ccccccCHHHHHHHHHHHHh-hcc--------CCCCcccCCHHHHHHHcCCCCccccCCCCcccCccccccCceecCCcc
Confidence 22344566555554444321 111 000111100000111112233579888889999999999999654322
Q ss_pred CcchHhhcCCCHHHHHHHHHHHHHhhhhhccCcccccccccccccccc
Q 022377 250 SLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIG 297 (298)
Q Consensus 250 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (298)
...++|++....|++..... |.-|..| |.|||
T Consensus 279 -----------~~~~~~~~~~~~w~~~~~~~---~~~c~~c--~~~~~ 310 (318)
T TIGR03470 279 -----------VPTFRELMEETDWDSYGTGK---DPRCANC--MVHCG 310 (318)
T ss_pred -----------hhhHHHHHhcCChhhcCCCC---CcchHHH--HHhhC
Confidence 25688999999998875444 5566666 77776
No 11
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=99.97 E-value=9e-30 Score=232.32 Aligned_cols=273 Identities=16% Similarity=0.163 Sum_probs=179.2
Q ss_pred CCCCHHHHHHHHHHHHhC--CCCEEEEcCCccCccc-cH-HHHHHHHhccC--CCC-cEEEEeCccchH-hhHHHHHHcC
Q 022377 13 QLLSLNEILRLAYLFVTS--GVDKIRLTGGEPTVRK-DI-EEACFHLSKLK--GLK-TLAMTTNGLTLA-RKLPKLKESG 84 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~--~~~~v~~tGGEPll~~-~~-~~ii~~~~~~~--~~~-~v~i~TNG~ll~-~~~~~l~~~~ 84 (298)
..|+.+.+.++++.+.+. +...|.|+||||||+| ++ .++++++++.. ++. .++|+|||++++ +.++.|.+.+
T Consensus 37 ~~m~~~~~~~~i~~~~~~~~~~~~i~~~GGEPll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~~~ 116 (370)
T PRK13758 37 GIMRDEVLESMVKRVLNEAEGHCSFAFQGGEPTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSENK 116 (370)
T ss_pred CCCCHHHHHHHHHHHHhccCCceEEEEECCccccCChHHHHHHHHHHHHhccCCCeEEEEEEecCEecCHHHHHHHHHcC
Confidence 479999999999877664 3457899999999996 65 48999988741 221 268999999995 5788888877
Q ss_pred CCeEEEecCCCCHHhhhhhc----CCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEE
Q 022377 85 LTSVNISLDTLVPAKFEFLT----RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFI 159 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir----~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~ 159 (298)
+ .|+|||||+ ++.|+..| +.++|++++++|+.|++.|+ ++.+.+|+++ .|.++++++++++.++|+. +.+.
T Consensus 117 ~-~v~iSlDg~-~~~hd~~R~~~~g~~~f~~v~~~i~~l~~~~~-~~~i~~~v~~-~n~~~l~~i~~~~~~~g~~~~~~~ 192 (370)
T PRK13758 117 F-LVGLSMDGP-KEIHNLNRKDCCGLDTFSKVERAAELFKKYKV-EFNILCVVTS-NTARHVNKIYKYFKEKDFKFLQFI 192 (370)
T ss_pred c-eEEEeecCC-HHHhccccCCCCCCccHHHHHHHHHHHHHhCC-CceEEEEecc-ccccCHHHHHHHHHHcCCCeEeee
Confidence 6 799999997 68899998 45679999999999999999 9999999998 7999999999999999984 3343
Q ss_pred e-eecCCCCCCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCccccC--C-CC-eEEEe
Q 022377 160 E-FMPFDGNVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCA--G-CN-RLRLL 234 (298)
Q Consensus 160 ~-~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~--~-~~-~~~I~ 234 (298)
. +.|.+.........++.+++.+.+...+......... . ..+.+......+..+.......|+ + |. .+.|+
T Consensus 193 ~~~~p~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~--g--~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~I~ 268 (370)
T PRK13758 193 NCLDPLYEEKGKYNYSLKPKDYTKFLKNLFDLWYEDFLN--G--NRVSIRYFDGLLETILLGKSSSCGMNGTCTCQFVVE 268 (370)
T ss_pred eccCccccccCCCcCccCHHHHHHHHHHHHHHHHHhhcC--C--CcEEeehHHHHHHHHhCCCCCCCccccccCccEEEe
Confidence 2 3455433222223355555444333322100000000 0 001110000000000000112352 2 22 58999
Q ss_pred cccceeecCCCC-CCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCccccccccccccccccC
Q 022377 235 ADGNFKVCLFGP-SEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 235 ~dG~v~pC~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
|||+|+||.... .++.+ +++.++++.++|......+...-.......|..|.+...|||
T Consensus 269 ~dG~V~pC~~~~~~~~~~-----GNI~~~~l~~i~~~~~~~~~~~~~~~~~~~C~~C~~~~~C~G 328 (370)
T PRK13758 269 SDGSVYPCDFYVLDKWRL-----GNIQDMTMKELFETNKNHEFIKSSFKVHEECKKCKWFPLCKG 328 (370)
T ss_pred cCCCEEeCCccccCCccc-----cCcCCCCHHHHHhCHHHHHHHHhhcccccccCCCCCcCccCC
Confidence 999999998654 34444 455567899999755332222212334568999999999965
No 12
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=99.97 E-value=2.3e-29 Score=232.02 Aligned_cols=271 Identities=16% Similarity=0.140 Sum_probs=179.1
Q ss_pred CCCCCHHHHHHHHHHHHhC-CCCE--EEEcCCccCcccc--HHHHHHHHhc---cCCCCcEEEEeCccchH-hhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTS-GVDK--IRLTGGEPTVRKD--IEEACFHLSK---LKGLKTLAMTTNGLTLA-RKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~-~~~~--v~~tGGEPll~~~--~~~ii~~~~~---~~~~~~v~i~TNG~ll~-~~~~~l~~ 82 (298)
...|+.+++.++|+++.+. +... +.|+||||||+++ +.++++.+++ ..++ .++|+|||++++ +.++.|.+
T Consensus 45 ~~~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~~~~~~~~i-~~~i~TNG~ll~~e~~~~l~~ 123 (412)
T PRK13745 45 KHVMSDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALELQKKYARGRQI-DNCIQTNGTLLTDEWCEFFRE 123 (412)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHHHHHHcCCCce-EEEEeecCEeCCHHHHHHHHH
Confidence 3469999999999998764 4444 5668999999997 3355554432 2466 488999999995 57888888
Q ss_pred cCCCeEEEecCCCCHHhhhhhc----CCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLT----RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IR 157 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir----~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~ 157 (298)
.++ .|+|||||+ ++.||..| |.++|++++++|+.|+++|+ .+.+.+|+++ .|.+++.++++++.++|++ +.
T Consensus 124 ~~~-~v~ISlDG~-~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi-~~~i~~vv~~-~n~~~~~e~~~~~~~lg~~~~~ 199 (412)
T PRK13745 124 NNF-LVGVSIDGP-QEFHDEYRKNKMGKPSFVKVMKGINLLKKHGV-EWNAMAVVND-FNADYPLDFYHFFKELDCHYIQ 199 (412)
T ss_pred cCe-EEEEEecCC-HHHhhhhcCCCCCCccHHHHHHHHHHHHHcCC-CEEEEEEEcC-CccccHHHHHHHHHHcCCCeEE
Confidence 886 799999997 68899888 34679999999999999999 9999999998 8999999999999999984 55
Q ss_pred EEeeecC------CCC--------CC-cccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCc
Q 022377 158 FIEFMPF------DGN--------VW-NVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTE 222 (298)
Q Consensus 158 ~~~~~p~------~~~--------~~-~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (298)
+..+.|. +.. .. ..+..++.+++.+++.+.+....... .. ..+..+.. ..+........
T Consensus 200 ~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~fl~~lf~~w~~~~--~~--~~~i~~f~--~~~~~~~g~~~ 273 (412)
T PRK13745 200 FAPIVERIVSHQDGRHLASLAQQEGGELAPFSVTPEQWGNFLCTIFDEWVKED--VG--KYYIQLFD--STLANWVGEQP 273 (412)
T ss_pred EEeccCccccccccccccCcccccccccCCCccCHHHHHHHHHHHHHHHHHcc--CC--CeEEecHH--HHHHHHhCCCC
Confidence 5555552 110 00 01223566666666554442111100 00 00111100 00000001112
Q ss_pred ccc---CCCCe-EEEecccceeecCCCC-CCCCcchHhhcCCCHHHHHHHHHHHHHhh-hhhccCccccccccccccccc
Q 022377 223 HFC---AGCNR-LRLLADGNFKVCLFGP-SEVSLRDPLRQNASDDELREIIGAAVKRK-KAAHAGMFDIAKTANRPMIHI 296 (298)
Q Consensus 223 ~~C---~~~~~-~~I~~dG~v~pC~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 296 (298)
..| ..|+. ..|++||+||||.+.. .++.+ +|+.+++|.++|.....+. ...+.-....+|..|.+...|
T Consensus 274 ~~C~~~~~cg~~~~i~~nGdVypCd~~~~~e~~l-----GNI~~~sl~~i~~s~~~~~f~~~~~~~~~~~C~~C~~~~~C 348 (412)
T PRK13745 274 GVCSMAKHCGHAGVMEFNGDVYSCDHFVFPEYKL-----GNIYQQTLVEMMYSERQTAFGTMKYKSLPTQCKECEYLFAC 348 (412)
T ss_pred CcceecCCCCcceEEecCCcEEeccccccccccc-----CCcCCCCHHHHHhCHHHHHHHHhhhccCchhcCCCCccccc
Confidence 245 23443 4699999999998764 34555 4455678999997654322 111223567789999999999
Q ss_pred cC
Q 022377 297 GG 298 (298)
Q Consensus 297 ~~ 298 (298)
+|
T Consensus 349 ~G 350 (412)
T PRK13745 349 HG 350 (412)
T ss_pred CC
Confidence 43
No 13
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.95 E-value=1.9e-25 Score=202.04 Aligned_cols=269 Identities=26% Similarity=0.331 Sum_probs=191.4
Q ss_pred CCCCCHHHHHHHHHHHHhCC-CCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeEE
Q 022377 12 PQLLSLNEILRLAYLFVTSG-VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSVN 89 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~-~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~ 89 (298)
..+++.++..++++++.+.+ ...+.|+||||++++++.++++++++..++ .+++.|||+++ .+.++++.+++++.|+
T Consensus 45 ~~el~~~~~~~~~~~~~~~g~~~~v~~~gGEPll~~d~~ei~~~~~~~~~~-~~~~~TnG~~~~~~~~~~l~~~g~~~v~ 123 (347)
T COG0535 45 PGELSTEEDLRVIDELAELGEIPVVIFTGGEPLLRPDLLEIVEYARKKGGI-RVSLSTNGTLLTEEVLEKLKEAGLDYVS 123 (347)
T ss_pred ccccCHHHHHHHHHHHHHcCCeeEEEEeCCCccccccHHHHHHHHhhcCCe-EEEEeCCCccCCHHHHHHHHhcCCcEEE
Confidence 68999999999999999999 899999999999999999999999964577 49999999766 4688999999999999
Q ss_pred EecCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCC
Q 022377 90 ISLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGN 167 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~ 167 (298)
||+|+.+++.|+.+||. +.|++++++++.+.+.|+ .+.+++++++ .|.++++++.+++.++|+ .+....++|.+..
T Consensus 124 iSid~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~-~~~~~~~v~~-~n~~~l~~~~~~~~~~g~~~~~~~~~~~~g~~ 201 (347)
T COG0535 124 ISLDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGI-LVVINTTVTK-INYDELPEIADLAAELGVDELNVFPLIPVGRG 201 (347)
T ss_pred EEecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCC-eeeEEEEEec-CcHHHHHHHHHHHHHcCCCEEEEEEEeecccc
Confidence 99999999999999995 459999999999999999 6899999998 899999999999999997 4666788888766
Q ss_pred CCcccCCCCHHH--HHHHHHHhCCC-ceecCCCCCCCcceEEeCCCCeeEEEEeCCCcccc-CCCCeEEEecccceeecC
Q 022377 168 VWNVKKLVPYAE--MLDTVVKKFPG-LRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFC-AGCNRLRLLADGNFKVCL 243 (298)
Q Consensus 168 ~~~~~~~~~~~e--~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C-~~~~~~~I~~dG~v~pC~ 243 (298)
.......++.++ ........... .... .. .....+..+.... .........| ++...+.|++||+|+||.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~i~~~G~v~pc~ 275 (347)
T COG0535 202 EENLELDLTPEEEELLLVLLLRSAKYLLRG--LP-VEAPLFYGPLLLD---FLFNGDPYECLAGRVSLAIDPDGEVYPCP 275 (347)
T ss_pred cccccccCCHHHHHHHHHHHHHHHhhcccc--ce-eccccccchhcch---hhccCccccccCCeEEEEECCCCCEecCc
Confidence 553222233322 11111111101 0000 00 0000010000000 0000111224 566678999999999999
Q ss_pred CCCCCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCccccccccccccccccC
Q 022377 244 FGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 244 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
+... + + +.++.+.++|+..++++.+.-.......|..|.+--.|||
T Consensus 276 ~~~~---~-----G-v~~~~~~~iw~~~~~~~~~~~~~~~~~~c~~c~~~~~c~g 321 (347)
T COG0535 276 FLPE---L-----G-VREESFKEIWEESLLNKLRERDELLEGSCGKCEYREYCGG 321 (347)
T ss_pred cccc---C-----c-cccCCHHHHHHHHHHHHhcCchhccCCcCCCCCCcccccc
Confidence 8876 3 3 4457899999988444333222222214888888777775
No 14
>COG0641 AslB Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only]
Probab=99.94 E-value=1.4e-25 Score=201.96 Aligned_cols=264 Identities=17% Similarity=0.210 Sum_probs=170.6
Q ss_pred CCCHHHHHHHHHHHHhCC-CCE--EEEcCCccCccc-cHHHHHHHHhc----cCCCCcEEEEeCccch-HhhHHHHHHcC
Q 022377 14 LLSLNEILRLAYLFVTSG-VDK--IRLTGGEPTVRK-DIEEACFHLSK----LKGLKTLAMTTNGLTL-ARKLPKLKESG 84 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~-~~~--v~~tGGEPll~~-~~~~ii~~~~~----~~~~~~v~i~TNG~ll-~~~~~~l~~~~ 84 (298)
.||.|.++++++.+.+.. ... |+|+||||||.+ ++.+.+..+.+ ...+ ..+|+|||+++ ++.++.|++.+
T Consensus 36 ~Ms~etle~~i~~~~~~~~~~~v~~~w~GGEPlL~~~~f~~~~~~l~~k~~~~~~i-~~siqTNg~LL~~e~~e~l~~~~ 114 (378)
T COG0641 36 IMSDETLEEYVRQYIAASNGDKVTFTWQGGEPLLAGLDFYRKAVALQQKYANGKTI-SNALQTNGTLLNDEWAEFLAEHD 114 (378)
T ss_pred CCCHHHHHHHHHHHHhhCCCCeeEEEEECCccccchHHHHHHHHHHHHHHhcCCee-EEEEEEcccccCHHHHHHHHhcC
Confidence 699999999999988854 355 777899999995 46554444322 1234 36699999999 56788899988
Q ss_pred CCeEEEecCCCCHHhhhhhc----CCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEe
Q 022377 85 LTSVNISLDTLVPAKFEFLT----RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIE 160 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir----~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~ 160 (298)
+ .|.|||||+ ++.||+.| |.++|++++++|+.|++.++ .+.+.+|+++ +|.+.+.++++++.+.|. +.+.
T Consensus 115 ~-~IgISiDGp-~eihD~~R~~~~GkgTfd~i~~~i~~L~~~~v-~~~~~~vv~~-~n~~~~~ei~~~l~~~g~--~~i~ 188 (378)
T COG0641 115 F-LIGISIDGP-EEIHDKYRVTKSGKGTFDRVMKGLELLQAHGV-DFNTLTVVNR-QNVLHPEEIYHFLKSEGS--KFIQ 188 (378)
T ss_pred c-eEEEeccCc-hHhccccccCCCCCccHHHHHHHHHHHHHcCC-cEEEEEEEch-hHhhCHHHHHHHHHHccc--ceEE
Confidence 8 799999997 89999999 77889999999999999999 9999999998 899999999999999884 3444
Q ss_pred eecCC---CCC-CcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEE-EEeCCC-----ccccCCCCe
Q 022377 161 FMPFD---GNV-WNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVS-FITSMT-----EHFCAGCNR 230 (298)
Q Consensus 161 ~~p~~---~~~-~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~C~~~~~ 230 (298)
|.|.- ... .......+.++..+++...+....+... ..+.+......+. ...+.. ...| |.+.
T Consensus 189 fip~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~------~~i~i~~f~~~~~~~~~~~~~~c~~~~~c-g~~~ 261 (378)
T COG0641 189 FIPLVESDNRGDSLLEFSVTAEEYGQFLIAIFDEWVRHDV------GRIFIQNFDQLLKAWLGPPGSLCIFSETC-GDEL 261 (378)
T ss_pred EEecccCCCCCccccccccCHHHHHHHHHHHHHHHHHhcC------CeeeehhHHHHHHHhhCCCCcceeeeccc-Ccce
Confidence 45532 221 0112345555555555544422222110 0011110000000 000000 1123 3345
Q ss_pred EEEecccceeecCC-CCCCCCcchHhhcCCCHHHHHHHHHHHHHhh--hhhccCccccccccccccccccC
Q 022377 231 LRLLADGNFKVCLF-GPSEVSLRDPLRQNASDDELREIIGAAVKRK--KAAHAGMFDIAKTANRPMIHIGG 298 (298)
Q Consensus 231 ~~I~~dG~v~pC~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 298 (298)
+ |+|+|++|||.+ ...++-++++.. +++..+..+..+.+ ...+.+... +|..|-+...|+|
T Consensus 262 ~-v~~nGdiy~C~~~~~~~~~~Gnl~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~C~~C~~~~~C~G 325 (378)
T COG0641 262 V-VEPNGDIYSCDHFVYPEYKLGNIHE-----TSLAQMLASPQQQQFGADKQKGLSA-KCQRCEWLFLCHG 325 (378)
T ss_pred E-EcCCCCeecCcccccccceeccccc-----cchhhhhhhHHHHHHHHHhhhhhhh-hccCCCchhhhcC
Confidence 6 999999999954 234566655544 34544444442222 122333333 7888888888876
No 15
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=99.86 E-value=2.5e-20 Score=159.73 Aligned_cols=153 Identities=16% Similarity=0.289 Sum_probs=126.6
Q ss_pred CCCCCHHHHHHHHHHHHhCC---CCEEEEcCCccCccccHH-HHHHHHhccCCCCcEEEEeCccch--HhhHHHHHHcCC
Q 022377 12 PQLLSLNEILRLAYLFVTSG---VDKIRLTGGEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLTL--ARKLPKLKESGL 85 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~---~~~v~~tGGEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~ll--~~~~~~l~~~~~ 85 (298)
..+++++++.+.++++.... ...|.|+|||||+++++. ++++++++. ++. +.++|||++. ++.+.++.+ .+
T Consensus 43 ~~~~s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~~~~~~li~~~~~~-g~~-~~i~TNG~~~~~~~~~~~ll~-~~ 119 (235)
T TIGR02493 43 GTEVTPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQPEFLSELFKACKEL-GIH-TCLDTSGFLGGCTEAADELLE-YT 119 (235)
T ss_pred CEECCHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCHHHHHHHHHHHHHC-CCC-EEEEcCCCCCccHHHHHHHHH-hC
Confidence 46799999998888776532 247999999999999965 999999984 885 9999999764 677777777 57
Q ss_pred CeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCC--CHhHHHHHHHHHhhCCC--eeEEEee
Q 022377 86 TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGF--NDDEICDFVELTRDRPI--NIRFIEF 161 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~--n~~~i~~i~~~~~~~g~--~~~~~~~ 161 (298)
+.|.||+|+.+++.|+++++. +|++++++++.+++.|+ ++.++++++++. |.++++++++++.++|. .+.+..|
T Consensus 120 d~v~isl~~~~~~~~~~~~g~-~~~~v~~~i~~l~~~g~-~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~~~~~~~~p~ 197 (235)
T TIGR02493 120 DLVLLDIKHFNPEKYKKLTGV-SLQPTLDFAKYLAKRNK-PIWIRYVLVPGYTDSEEDIEALAEFVKTLPNVERVEVLPY 197 (235)
T ss_pred CEEEEeCCCCCHHHHHHHHCC-CcHHHHHHHHHHHhCCC-cEEEEEeeeCCcCCCHHHHHHHHHHHHhCCCCceEEecCC
Confidence 899999999999999999986 89999999999999999 899999998864 56899999999999884 3445555
Q ss_pred ecCCCCCC
Q 022377 162 MPFDGNVW 169 (298)
Q Consensus 162 ~p~~~~~~ 169 (298)
.|.+...|
T Consensus 198 ~~~g~~~~ 205 (235)
T TIGR02493 198 HQLGVYKW 205 (235)
T ss_pred CcccHHHH
Confidence 55554434
No 16
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=99.85 E-value=1.2e-19 Score=161.23 Aligned_cols=170 Identities=18% Similarity=0.250 Sum_probs=135.7
Q ss_pred CCCCCCHHHHHHHHHHHHh-----C-C--------------CCEEEEc-CCccCccccHHHHHHHHhccCCCCcEEEEeC
Q 022377 11 KPQLLSLNEILRLAYLFVT-----S-G--------------VDKIRLT-GGEPTVRKDIEEACFHLSKLKGLKTLAMTTN 69 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~-----~-~--------------~~~v~~t-GGEPll~~~~~~ii~~~~~~~~~~~v~i~TN 69 (298)
.....++|++.+-+..... + | +..+.|+ +|||||+|++.++++++++. |+. +.|+||
T Consensus 89 ~~~~~~peeiv~~~~~~~~~~i~g~~g~~~v~~~~~~ea~~~~~v~iSl~GEPlL~p~l~eli~~~k~~-Gi~-~~L~TN 166 (322)
T PRK13762 89 EPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDREKFEEAMEPKHVAISLSGEPTLYPYLPELIEEFHKR-GFT-TFLVTN 166 (322)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhccCCCCCCCHHHhhhccCCCEEEEeCCccccchhhHHHHHHHHHHc-CCC-EEEECC
Confidence 3557888887665543311 1 2 4568898 69999999999999999995 995 999999
Q ss_pred ccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHH
Q 022377 70 GLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFV 146 (298)
Q Consensus 70 G~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~ 146 (298)
|++ .+.++.| ..+++.+.||||++++++|+++++. ++|++++++|+.+.+.+. ++.+++++.+|.|+++.++++
T Consensus 167 G~~-~e~l~~L-~~~~d~i~VSLda~~~e~~~~i~~~~~~~~~~~vl~~L~~l~~~~~-~~~ir~tlv~g~Nd~e~~~~a 243 (322)
T PRK13762 167 GTR-PDVLEKL-EEEPTQLYVSLDAPDEETYKKINRPVIPDAWERILETLELLPSKKT-RTVIRITLVKGYNMHDPEGFA 243 (322)
T ss_pred CCC-HHHHHHH-HhcCCEEEEEccCCCHHHHHHHhCCCCCCcHHHHHHHHHHHHhCCC-CEEEEEEEECCcCccHHHHHH
Confidence 976 6778888 6689999999999999999999873 469999999999999999 999999999999999999999
Q ss_pred HHHhhCCCe-eEEEeeecCCCCCC--cccCCCCHHHHHHHHH
Q 022377 147 ELTRDRPIN-IRFIEFMPFDGNVW--NVKKLVPYAEMLDTVV 185 (298)
Q Consensus 147 ~~~~~~g~~-~~~~~~~p~~~~~~--~~~~~~~~~e~~~~i~ 185 (298)
+++.+.+++ +.+..|++.|...+ .....++.+++.+...
T Consensus 244 ~l~~~~~~~~Iel~~y~~~G~~k~~l~~~~~p~~eev~~~~~ 285 (322)
T PRK13762 244 KLIERANPDFVEVKAYMHVGYSRNRLTRDNMPSHEEVREFAK 285 (322)
T ss_pred HHHHHcCCCEEEEECCeECCCccccccccCCcCHHHHHHHHH
Confidence 999998874 56667888776644 2234456655554433
No 17
>PF06463 Mob_synth_C: Molybdenum Cofactor Synthesis C; InterPro: IPR010505 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry represents MoaA, which belongs to a family of enzymes involved in the synthesis of metallo-cofactors (IPR000385 from INTERPRO). Each subunit of the MoaA dimer is comprised of an N-terminal SAM domain (IPR007197 from INTERPRO) that contains the [4Fe-4S] cluster typical for this family of enzymes, as well as an additional [4Fe-4S] cluster in the C-terminal domain that is unique to MoaA proteins []. The unique Fe site of the C-terminal [4Fe-4S] cluster is thought to be involved in the binding and activation of 5'-GTP. Mutations in the human MoCF biosynthesis proteins MOCS1, MOCS2 or GEPH cause MoCF Deficiency type A (MOCOD), causing the loss of activity of MoCF-containing enzymes, resulting in neurological abnormalities and death [].; GO: 0051539 4 iron, 4 sulfur cluster binding, 0006777 Mo-molybdopterin cofactor biosynthetic process, 0019008 molybdopterin synthase complex; PDB: 2FB2_A 2FB3_A 1TV8_B 1TV7_A.
Probab=99.85 E-value=6.3e-21 Score=146.78 Aligned_cols=126 Identities=40% Similarity=0.785 Sum_probs=89.2
Q ss_pred CeeEEEeeecCCC-CCCcccCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCccccCCCCeEE
Q 022377 154 INIRFIEFMPFDG-NVWNVKKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFCAGCNRLR 232 (298)
Q Consensus 154 ~~~~~~~~~p~~~-~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 232 (298)
+.++|+++||.+. ..|.....++.+++++.+.+.+. ..........++.+|.+++..+.+++|++.+++||+.|++++
T Consensus 1 i~vRFIElMP~g~~~~~~~~~~~~~~ei~~~l~~~~~-~~~~~~~~~~pa~~y~~~g~~g~vG~I~~~s~~FC~~CNRiR 79 (128)
T PF06463_consen 1 IDVRFIELMPIGEGNNWFEEEFVPAQEILERLEERYE-LLPSEKRPNGPARYYRIPGGKGRVGFISPVSNPFCSSCNRIR 79 (128)
T ss_dssp -EEEEEE---B-TTSSB-TTTB--HHHHHHHHHHHS--EEEE--SST-SSEEEEETTT--EEEEE-TTTS--GGG--EEE
T ss_pred CeEEEEEeeecCCCCCchhhcCcCHHHHHHHHHHhCC-ccccccccCCcceEEEECCCCcEEEEEeCCCCCCCCcCCEEE
Confidence 3689999999984 56877788999999999999984 443334457889999999998899999999999999999999
Q ss_pred EecccceeecCCCCCCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhcc
Q 022377 233 LLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHA 280 (298)
Q Consensus 233 I~~dG~v~pC~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (298)
|++||.+.||.+.+.+++|++.++++.+.+.|++.++.++++||++|+
T Consensus 80 lTsdG~l~~CL~~~~~idl~~~lr~~~~~~~l~~~i~~ai~~Kp~~h~ 127 (128)
T PF06463_consen 80 LTSDGKLKPCLFSNDGIDLRPLLRSGASDEELKEAIREAIARKPPRHH 127 (128)
T ss_dssp E-TTSEEESSSS-SS-EEHHHHHHTT--HHHHHHHHHHHHHT----HH
T ss_pred EccCccEEEcccCCCCcChhHHhhCCCCHHHHHHHHHHHHHChhhhcC
Confidence 999999999999999999999999998889999999999999999996
No 18
>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB. This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.
Probab=99.85 E-value=1.2e-19 Score=167.70 Aligned_cols=151 Identities=24% Similarity=0.390 Sum_probs=127.8
Q ss_pred CCCCCHHHHHHHHHHHHhC--CCCEEEEcC-CccCcccc-HHHHHHHHhcc-CCCCcEEEEeCccchHhhHHHHHHcCCC
Q 022377 12 PQLLSLNEILRLAYLFVTS--GVDKIRLTG-GEPTVRKD-IEEACFHLSKL-KGLKTLAMTTNGLTLARKLPKLKESGLT 86 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~--~~~~v~~tG-GEPll~~~-~~~ii~~~~~~-~~~~~v~i~TNG~ll~~~~~~l~~~~~~ 86 (298)
...||++++.+.++++... ++..|.|+| ||||++++ ..+.+..+++. .++. +.|+|||+++.+.+++|.+.|++
T Consensus 57 ~~~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~e~~~~~l~~~~~~~~~i~-i~lsTNG~~l~e~i~~L~~~gvd 135 (442)
T TIGR01290 57 SELLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANIGKTFQTLELVARQLPDVK-LCLSTNGLMLPEHVDRLVDLGVG 135 (442)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCccccHHHHHHHHHhcCCCe-EEEECCCCCCHHHHHHHHHCCCC
Confidence 4679999999999888764 467899999 99999987 45777777764 4785 99999998888899999999999
Q ss_pred eEEEecCCCCHHhhhhh-----------cCCCc----HHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 87 SVNISLDTLVPAKFEFL-----------TRRKG----HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~i-----------r~~~~----~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
.|.||||+.+++.|+++ +|... |++++++|+.+.+.|+ .+.+++++.+|.|++++.++++++++
T Consensus 136 ~V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~-~v~v~~vlIpGiND~~i~~l~~~~~~ 214 (442)
T TIGR01290 136 HVTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGI-LVKVNSVLIPGINDEHLVEVSKQVKE 214 (442)
T ss_pred eEEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCC-eEEEEEEeeCCcCHHHHHHHHHHHHh
Confidence 99999999999999875 33222 7889999999999999 99999999999999999999999999
Q ss_pred CCCe-eEEEeeecC
Q 022377 152 RPIN-IRFIEFMPF 164 (298)
Q Consensus 152 ~g~~-~~~~~~~p~ 164 (298)
+|+. +.++.+.|.
T Consensus 215 lg~~~~nl~p~~~~ 228 (442)
T TIGR01290 215 LGAFLHNVMPLISA 228 (442)
T ss_pred CCCcEEEeecCCCc
Confidence 9874 344455543
No 19
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=99.84 E-value=6.1e-20 Score=162.55 Aligned_cols=153 Identities=18% Similarity=0.316 Sum_probs=127.4
Q ss_pred CCCCCHHHHHHHHHHHHh---CCCCEEEEcCCccCccccHH-HHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCe
Q 022377 12 PQLLSLNEILRLAYLFVT---SGVDKIRLTGGEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTS 87 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~---~~~~~v~~tGGEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~ 87 (298)
..+++.+++.+.+.+... .....|.|+|||||+++++. ++++++++. |+. +.+.|||+++++.++++.+ .++.
T Consensus 103 g~~~t~eel~~~i~~~~~~~~~~~~~V~~sGGEPll~~~~l~~l~~~~k~~-g~~-~~i~TnG~~~~~~~~~ll~-~~d~ 179 (295)
T TIGR02494 103 GEEMTVEEVMRVVLRDSIFYRNSGGGVTLSGGEPLLQPEFALALLQACHER-GIH-TAVETSGFTPWETIEKVLP-YVDL 179 (295)
T ss_pred ccCCcHHHHHHHHHHHHHhcccCCCcEEeeCcchhchHHHHHHHHHHHHHc-CCc-EeeeCCCCCCHHHHHHHHh-hCCE
Confidence 456888888887765443 23468999999999999975 999999985 885 9999999987777888776 5788
Q ss_pred EEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC--HhHHHHHHHHHhhCC--C-eeEEEeee
Q 022377 88 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN--DDEICDFVELTRDRP--I-NIRFIEFM 162 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n--~~~i~~i~~~~~~~g--~-~~~~~~~~ 162 (298)
+.||+|+.+++.|++++|. +++.++++|+.|.+.+. ++.++++++++.| .++++++++++.+++ + .+.+..+.
T Consensus 180 ~~isl~~~~~~~~~~~~g~-~~~~vl~~i~~l~~~~~-~~~i~~~~v~~~n~~~~ei~~l~~~~~~~~~~v~~v~l~~~~ 257 (295)
T TIGR02494 180 FLFDIKHLDDERHKEVTGV-DNEPILENLEALAAAGK-NVVIRIPVIPGFNDSEENIEAIAAFLRKLEPGVDEIDLLPYH 257 (295)
T ss_pred EEEeeccCChHHHHHHhCC-ChHHHHHHHHHHHhCCC-cEEEEeceeCCcCCCHHHHHHHHHHHHHhccCCceEEecCCC
Confidence 9999999999999999984 68999999999999999 9999999888765 468999999999987 4 55666666
Q ss_pred cCCCCCC
Q 022377 163 PFDGNVW 169 (298)
Q Consensus 163 p~~~~~~ 169 (298)
|.+..+|
T Consensus 258 ~~g~~~~ 264 (295)
T TIGR02494 258 RLGENKY 264 (295)
T ss_pred chhHHHH
Confidence 7665554
No 20
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=99.83 E-value=2.8e-19 Score=149.56 Aligned_cols=153 Identities=17% Similarity=0.194 Sum_probs=128.5
Q ss_pred CCCCCCHHHHHHHHHHHHhC---CCCEEEEcCCccCccccHH-HHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCC
Q 022377 11 KPQLLSLNEILRLAYLFVTS---GVDKIRLTGGEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLT 86 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~---~~~~v~~tGGEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~ 86 (298)
...++|+|++.+.+.+-..+ +-..|+||||||+++++|. ++++.+++. |+. +.+.|||+.-.+.++.+.+ .+|
T Consensus 15 ~g~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~-gi~-~~leTnG~~~~~~~~~l~~-~~D 91 (213)
T PRK10076 15 IGRDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLW-GVS-CAIETAGDAPASKLLPLAK-LCD 91 (213)
T ss_pred cCcccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHc-CCC-EEEECCCCCCHHHHHHHHH-hcC
Confidence 35669999998877654332 3369999999999999975 999999994 996 9999999877778888887 599
Q ss_pred eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH--hHHHHHHHHHhhCCC-eeEEEeeec
Q 022377 87 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND--DEICDFVELTRDRPI-NIRFIEFMP 163 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~g~-~~~~~~~~p 163 (298)
.+.+++.+.+++.|.+++| .+.+.+++|++.+.+.|+ ++.+++++.||.|+ ++++++++++.++++ .+.+..|.|
T Consensus 92 ~~l~DiK~~d~~~~~~~tG-~~~~~il~nl~~l~~~g~-~v~iR~~vIPg~nd~~e~i~~ia~~l~~l~~~~~~llpyh~ 169 (213)
T PRK10076 92 EVLFDLKIMDATQARDVVK-MNLPRVLENLRLLVSEGV-NVIPRLPLIPGFTLSRENMQQALDVLIPLGIKQIHLLPFHQ 169 (213)
T ss_pred EEEEeeccCCHHHHHHHHC-CCHHHHHHHHHHHHhCCC-cEEEEEEEECCCCCCHHHHHHHHHHHHHcCCceEEEecCCc
Confidence 9999999999999999998 568999999999999999 99999999999875 679999999998876 455566666
Q ss_pred CCCCC
Q 022377 164 FDGNV 168 (298)
Q Consensus 164 ~~~~~ 168 (298)
.+..+
T Consensus 170 ~g~~K 174 (213)
T PRK10076 170 YGEPK 174 (213)
T ss_pred cchhH
Confidence 65443
No 21
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=99.82 E-value=3.2e-19 Score=153.92 Aligned_cols=154 Identities=16% Similarity=0.263 Sum_probs=124.3
Q ss_pred CCCCCCHHHHHHHHHHHHhC---CCCEEEEcCCccCccccHH-HHHHHHhccCCCCcEEEEeCccch--HhhHHHHHHcC
Q 022377 11 KPQLLSLNEILRLAYLFVTS---GVDKIRLTGGEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLTL--ARKLPKLKESG 84 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~---~~~~v~~tGGEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~ll--~~~~~~l~~~~ 84 (298)
...++|.+++.+.+.+.... ....|.|+|||||+++++. ++++.+++ .|+. +.++|||++. ++.++.+.+ .
T Consensus 47 ~~~~lt~eei~~~i~~~~~~~~~~~~~V~~sGGEPll~~~~~~~l~~~~k~-~g~~-i~l~TNG~~~~~~~~~~~ll~-~ 123 (246)
T PRK11145 47 GGKEVTVEELMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKK-EGIH-TCLDTNGFVRRYDPVIDELLD-V 123 (246)
T ss_pred CCeEcCHHHHHHHHHHhHHHHhcCCCeEEEeCccHhcCHHHHHHHHHHHHH-cCCC-EEEECCCCCCcchHHHHHHHH-h
Confidence 35679999988777665432 2358999999999999975 99999998 5995 9999999875 467777776 4
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHh--HHHHHHHHHhhCC-C-eeEEEe
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDD--EICDFVELTRDRP-I-NIRFIE 160 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~~g-~-~~~~~~ 160 (298)
++.|.||+|+.+++.|+.++|. +.++++++++.+.+.|+ ++.+++++.+|.|++ +++++++|+.+++ + .+.++.
T Consensus 124 ~d~v~islk~~~~e~~~~~~g~-~~~~~l~~i~~l~~~g~-~v~i~~~li~g~nd~~~ei~~l~~~l~~l~~~~~~~l~~ 201 (246)
T PRK11145 124 TDLVMLDLKQMNDEIHQNLVGV-SNHRTLEFARYLAKRNQ-KTWIRYVVVPGWTDDDDSAHRLGEFIKDMGNIEKIELLP 201 (246)
T ss_pred CCEEEECCCcCChhhcccccCC-ChHHHHHHHHHHHhCCC-cEEEEEEEECCCCCCHHHHHHHHHHHHhcCCcceEEEec
Confidence 8899999999999999999985 46899999999999999 999999999998874 6999999998875 2 344445
Q ss_pred eecCCCCCC
Q 022377 161 FMPFDGNVW 169 (298)
Q Consensus 161 ~~p~~~~~~ 169 (298)
|.|.+..+|
T Consensus 202 ~~~~~~~~~ 210 (246)
T PRK11145 202 YHELGKHKW 210 (246)
T ss_pred CCccchhHH
Confidence 555444433
No 22
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=99.81 E-value=1.9e-18 Score=143.46 Aligned_cols=138 Identities=22% Similarity=0.399 Sum_probs=116.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcC-CCeE
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG-LTSV 88 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~-~~~v 88 (298)
.....|+.+++.+.+++... .+..|.|+|||||+++++.++++++++. ++. +.+.|||+ ..+.++++.++| ++.|
T Consensus 42 ~~~~~~~~~~i~~~i~~~~~-~~~~i~~sGGEPll~~~l~~li~~~~~~-g~~-v~i~TNg~-~~~~l~~l~~~g~~~~v 117 (191)
T TIGR02495 42 EGSGEIEVEFLLEFLRSRQG-LIDGVVITGGEPTLQAGLPDFLRKVREL-GFE-VKLDTNGS-NPRVLEELLEEGLVDYV 117 (191)
T ss_pred CCCCcCCHHHHHHHHHHhcC-CCCeEEEECCcccCcHhHHHHHHHHHHC-CCe-EEEEeCCC-CHHHHHHHHhcCCCcEE
Confidence 34467999999998887532 3679999999999999998999999994 885 99999997 467788888888 6899
Q ss_pred EEecCCCCHHhhhhhcCCC-cHH-HHHHHHHHHHHcCCCCEEEEEEEecCCCH-hHHHHHHHHHhhCC
Q 022377 89 NISLDTLVPAKFEFLTRRK-GHE-KVMESINAAIEVGYNPVKVNCVVMRGFND-DEICDFVELTRDRP 153 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~-~~~-~v~~~i~~l~~~g~~~v~i~~vi~~~~n~-~~i~~i~~~~~~~g 153 (298)
++|+++. ++.|..+++.+ .+. +++++++.+.+.|+ .+.++++++++.+. ++++++++++.+.+
T Consensus 118 ~isl~~~-~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi-~~~i~~~v~~~~~~~~ei~~~~~~l~~~~ 183 (191)
T TIGR02495 118 AMDVKAP-PEKYPELYGLEKNGSNNILKSLEILLRSGI-PFELRTTVHRGFLDEEDLAEIATRIKENG 183 (191)
T ss_pred EEeccCC-hHHHHHHHCCCCchHHHHHHHHHHHHHcCC-CEEEEEEEeCCCCCHHHHHHHHHHhccCC
Confidence 9999995 67788887654 465 99999999999999 99999999987554 47999999998877
No 23
>PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.80 E-value=8.2e-18 Score=151.41 Aligned_cols=157 Identities=22% Similarity=0.361 Sum_probs=128.7
Q ss_pred CCCCCHHHHHHHHHHH--------HhCCCCEEEEcC-CccCcccc-HHHHHHHHhcc-CC----CCcEEEEeCccchHhh
Q 022377 12 PQLLSLNEILRLAYLF--------VTSGVDKIRLTG-GEPTVRKD-IEEACFHLSKL-KG----LKTLAMTTNGLTLARK 76 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~--------~~~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~-~~----~~~v~i~TNG~ll~~~ 76 (298)
...|+.+|+...+-.+ ...++..|.|+| ||||++++ +.++++++++. .+ ...++++||| +.+.
T Consensus 146 ~rnLt~~EI~~qv~~~~~~~~~~~~~~~v~nIvfmGmGEPLln~d~v~~~i~~l~~~~~~~~is~r~ItisT~G--l~~~ 223 (368)
T PRK14456 146 RRNLTAGEITGQVFALSDMLAERNRERGITNIVFMGMGEPLLNTDNVFEAVLTLSTRKYRFSISQRKITISTVG--ITPE 223 (368)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhhccCCccEEEEeCcCccccCHHHHHHHHHHHhccccccCcCcCeeEEECCC--ChHH
Confidence 4468999987665322 124678999999 99999996 88999999874 11 2358899999 4456
Q ss_pred HHHHHHcCCC-eEEEecCCCCHHhhhhhcC----CCcHHHHHHHHHH-HHHcCCCCEEEEEEEecCCCHh--HHHHHHHH
Q 022377 77 LPKLKESGLT-SVNISLDTLVPAKFEFLTR----RKGHEKVMESINA-AIEVGYNPVKVNCVVMRGFNDD--EICDFVEL 148 (298)
Q Consensus 77 ~~~l~~~~~~-~v~iSldg~~~~~~~~ir~----~~~~~~v~~~i~~-l~~~g~~~v~i~~vi~~~~n~~--~i~~i~~~ 148 (298)
+++|.++|++ .++||||+++++.++++.+ ..+++.++++++. +.+.|. ++.+++++.+|.|++ ++.+++++
T Consensus 224 i~~L~~~gl~~~LaiSL~a~~~e~r~~i~P~~~~~~~l~~l~~~i~~~~~~~g~-~V~ieyvLI~GvNDs~eda~~L~~~ 302 (368)
T PRK14456 224 IDRLATSGLKTKLAVSLHSADQEKRERLMPQAARDYPLDELREALIGYASKTGE-PVTLVYMLLEGINDSPEDARKLIRF 302 (368)
T ss_pred HHHHHHcCCCceEEEEecCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHhcCC-eEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 8999999986 8999999999999999962 3469999999985 556777 899999999999976 59999999
Q ss_pred HhhCCCeeEEEeeecCCCCCCcc
Q 022377 149 TRDRPINIRFIEFMPFDGNVWNV 171 (298)
Q Consensus 149 ~~~~g~~~~~~~~~p~~~~~~~~ 171 (298)
+..+++.+++++|+|.+..+|..
T Consensus 303 l~~~~~~VnlIpyn~~~~~~~~~ 325 (368)
T PRK14456 303 ASRFFCKINLIDYNSIVNIKFEP 325 (368)
T ss_pred HhcCCCeeEEeeeccCCCCCCCC
Confidence 99988899999999988877754
No 24
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.79 E-value=1.7e-17 Score=141.52 Aligned_cols=172 Identities=25% Similarity=0.399 Sum_probs=141.2
Q ss_pred CCCCHHHHHHHHHHHHhCCC--CEEEEcC-CccCccccHHHHHHHHhccCCCCcEEEEeCccchH-hhHHHHHHcCCCeE
Q 022377 13 QLLSLNEILRLAYLFVTSGV--DKIRLTG-GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA-RKLPKLKESGLTSV 88 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~--~~v~~tG-GEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~-~~~~~l~~~~~~~v 88 (298)
-..++|.+...++...++.- -...+-| |||+++|.+.++++.++++++...++|.|||++|+ +.++.|.++|++++
T Consensus 139 y~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l~~lVqalk~~~~v~vVSmQTng~~L~~~lv~eLeeAGLdRi 218 (414)
T COG2100 139 YVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHLVDLVQALKEHKGVEVVSMQTNGVLLSKKLVDELEEAGLDRI 218 (414)
T ss_pred eEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchhHHHHHHHHhcCCCceEEEEeeCceeccHHHHHHHHHhCCceE
Confidence 34677877777777666432 3567777 99999999999999999998888899999999994 68999999999999
Q ss_pred EEecCCCCHHhhhhhcCCC--cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-----eEEEee
Q 022377 89 NISLDTLVPAKFEFLTRRK--GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-----IRFIEF 161 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-----~~~~~~ 161 (298)
++|+|+.||+.-..+.|.. +.+++++.++.+.++++ .+-|.-+..||.|++|+..+++|+.+.|.+ .-+..|
T Consensus 219 NlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~i-dvlIaPv~lPG~ND~E~~~iIe~A~~iGaGkk~p~lgiQky 297 (414)
T COG2100 219 NLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGI-DVLIAPVWLPGVNDDEMPKIIEWAREIGAGKKWPPLGIQKY 297 (414)
T ss_pred EeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCC-CEEEeeeecCCcChHHHHHHHHHHHHhCCCCCCCCcceEEe
Confidence 9999999999988888865 48999999999999999 999999999999999999999999998763 345567
Q ss_pred ecC--CCCCCcccCCCCHHHHHHHHHH
Q 022377 162 MPF--DGNVWNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 162 ~p~--~~~~~~~~~~~~~~e~~~~i~~ 186 (298)
.|+ |+.. ......+..++..++.+
T Consensus 298 ipyk~GRkp-~~~k~~~fkeFYrwLre 323 (414)
T COG2100 298 IPYKFGRKP-VIAKVWPFKEFYRWLRE 323 (414)
T ss_pred eeecccCCc-cccccCcHHHHHHHHHH
Confidence 775 3333 22345667776655543
No 25
>COG1964 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=99.74 E-value=4.4e-17 Score=144.88 Aligned_cols=223 Identities=19% Similarity=0.280 Sum_probs=161.0
Q ss_pred CCCCHHHHHHHHHHHHhCC---CCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchH---hhHHHHHHcCCC
Q 022377 13 QLLSLNEILRLAYLFVTSG---VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA---RKLPKLKESGLT 86 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~---~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~---~~~~~l~~~~~~ 86 (298)
-+.|.|++..+++.+.... ...|.|+||||+++.|+.++++.+++. |..+|.+.|||..+. +.+++|.++|+.
T Consensus 89 YEpt~eqi~~Ml~~lk~e~p~~~~aIq~tGGEPTvr~DL~eiv~~a~e~-g~~hVqinTnGirlA~~~~~~~~l~~ag~~ 167 (475)
T COG1964 89 YEPTLEQIREMLRNLKKEHPVGANAVQFTGGEPTLRDDLIEIIKIAREE-GYDHVQLNTNGIRLAFDPEYVKKLREAGVN 167 (475)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCceeEecCCCccchhhHHHHHHHHhhc-CccEEEEccCceeeccCHHHHHHHHhcCCc
Confidence 3689999999999998863 479999999999999999999999995 887899999999873 578999999999
Q ss_pred eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeecCC-
Q 022377 87 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFD- 165 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p~~- 165 (298)
.|-+|+||.+++.|.+. +-.+-.+++.++++|...+.+--++.+|.|++++.++++|+..+---++-++|+|+.
T Consensus 168 tvYlsFDG~~e~~~~~~-----~~eIk~alen~r~~g~~svVLVptl~rgvNd~~lG~iirfa~~n~dvVrgVnfQPVsl 242 (475)
T COG1964 168 TVYLSFDGVTPKTNWKN-----HWEIKQALENCRKAGLPSVVLVPTLIRGVNDHELGAIIRFALNNIDVVRGVNFQPVSL 242 (475)
T ss_pred EEEEecCCCCCCchhhH-----hhhhHHHHHHHHhcCCCcEEEEeehhcccChHHHHHHHHHHHhccccccccceEEEEE
Confidence 99999999999987665 444555999999999845777778888999999999999998743235666777754
Q ss_pred --CCC-Ccc-cCCCCHHHHHHHHHHhCCCceecCC-CCCC-C--cceEE--eCCCCeeEEEEeCCCccccCCCCeEEEec
Q 022377 166 --GNV-WNV-KKLVPYAEMLDTVVKKFPGLRRMQD-HPTE-T--AKNFK--IDGHHGNVSFITSMTEHFCAGCNRLRLLA 235 (298)
Q Consensus 166 --~~~-~~~-~~~~~~~e~~~~i~~~~~~~~~~~~-~~~~-~--~~~~~--~~~~~~~~~~~~~~~~~~C~~~~~~~I~~ 235 (298)
+.. ..+ ...++..+.++.+.++.++...... .+.+ . ...+. +.+. ....+ ..+..|+..+.+....
T Consensus 243 tGr~~~~~r~~~RITIPd~iK~ieeQT~g~i~~~d~yPvp~~~~isr~v~al~~~-~~~~~---s~h~~cg~atYvf~~~ 318 (475)
T COG1964 243 TGRMPQKERERFRITIPDAIKKIEEQTDGEISKDDWYPVPIAVPISRFVEALTGD-PKYEL---TSHPACGAATYVFYDE 318 (475)
T ss_pred ecccchhhhhheEeechhHHHhHHHhcCCeeeccccccCcchhhHHHHHHHHcCC-Cceee---eccCCCCceEEEEecC
Confidence 221 111 3456777888888888866544321 1111 0 00000 0000 00000 1234576666777777
Q ss_pred ccceeecCCC
Q 022377 236 DGNFKVCLFG 245 (298)
Q Consensus 236 dG~v~pC~~~ 245 (298)
++++.|=...
T Consensus 319 ~~r~iPit~f 328 (475)
T COG1964 319 EKKVIPITRF 328 (475)
T ss_pred CCcEEeeeee
Confidence 7899997543
No 26
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=99.72 E-value=1.5e-16 Score=127.91 Aligned_cols=139 Identities=33% Similarity=0.499 Sum_probs=124.0
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhCCCCEEEEcCCccCccccHHHHHHHHhcc--CCCCcEEEEeCccch-HhhHHHHHHcC
Q 022377 9 TPKPQLLSLNEILRLAYLF-VTSGVDKIRLTGGEPTVRKDIEEACFHLSKL--KGLKTLAMTTNGLTL-ARKLPKLKESG 84 (298)
Q Consensus 9 ~~~~~~l~~e~~~~~i~~~-~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~--~~~~~v~i~TNG~ll-~~~~~~l~~~~ 84 (298)
......++.+++.+.++.+ ...+...+.++||||++++++.+++..+.+. .++ .+.+.|||+.+ .+.++.+.+.+
T Consensus 22 ~~~~~~~~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~~~~~~~~~~~~~~~~~-~i~~~t~~~~~~~~~l~~l~~~~ 100 (166)
T PF04055_consen 22 KNKPREMSPEEILEEIKELKQDKGVKEIFFGGGEPTLHPDFIELLELLRKIKKRGI-RISINTNGTLLDEELLDELKKLG 100 (166)
T ss_dssp TCGCEECHHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCHHHHHHHHHHHCTCTTE-EEEEEEESTTHCHHHHHHHHHTT
T ss_pred CcccccCCHHHHHHHHHHHhHhcCCcEEEEeecCCCcchhHHHHHHHHHHhhcccc-ceeeeccccchhHHHHHHHHhcC
Confidence 4566779999999999999 5777788999999999999999888888774 377 59999999999 78999999999
Q ss_pred CCeEEEecCCCCHH-hhhhhcCCCcHHHHHHHHHHHHHcCCCC-EEEEEEEecCCCHhHHHHHHHHH
Q 022377 85 LTSVNISLDTLVPA-KFEFLTRRKGHEKVMESINAAIEVGYNP-VKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 85 ~~~v~iSldg~~~~-~~~~ir~~~~~~~v~~~i~~l~~~g~~~-v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
++.+.+|+++.+++ .++.+++..++++++++++.+.++|+ + +...+++.++.|.++++++++|+
T Consensus 101 ~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~-~~~~~~i~~~~~~~~~e~~~~~~~i 166 (166)
T PF04055_consen 101 VDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGI-PRVIIFIVGLPGENDEEIEETIRFI 166 (166)
T ss_dssp CSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTS-ETEEEEEEEBTTTSHHHHHHHHHHH
T ss_pred ccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCC-CcEEEEEEEeCCCCHHHHHHHhCcC
Confidence 99999999999998 77777766789999999999999999 5 88888999999999999999875
No 27
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=99.72 E-value=9.7e-16 Score=139.38 Aligned_cols=151 Identities=17% Similarity=0.235 Sum_probs=128.5
Q ss_pred CCCCCCHHHHHHHHHHHHh-C--CCCEEEEcC-CccCccccHHHHHHHHhccCCCCcEEEE-eCccch--HhhHHHHHHc
Q 022377 11 KPQLLSLNEILRLAYLFVT-S--GVDKIRLTG-GEPTVRKDIEEACFHLSKLKGLKTLAMT-TNGLTL--ARKLPKLKES 83 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~-~--~~~~v~~tG-GEPll~~~~~~ii~~~~~~~~~~~v~i~-TNG~ll--~~~~~~l~~~ 83 (298)
.+..+|.+++.+.+.+... + ....|+|+| |||++++++.++++++++. ++. +.+. |||+.+ .+.++++++.
T Consensus 50 ~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~-gi~-taI~~TnG~~l~~~e~~~~L~~~ 127 (404)
T TIGR03278 50 NGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDL-GLP-IHLGYTSGKGFDDPEIAEFLIDN 127 (404)
T ss_pred cCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhC-CCC-EEEeCCCCcccCCHHHHHHHHHc
Confidence 5678999999988877554 2 346899986 5788899999999999995 896 8886 998744 5689999999
Q ss_pred CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH-hHHHHHHHHHhhCCC-eeEEEee
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND-DEICDFVELTRDRPI-NIRFIEF 161 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~-~~i~~i~~~~~~~g~-~~~~~~~ 161 (298)
+++.|.+|+|+.+++.|++++|.++.++++++++.+.+ ++ .+.+++++.||.|+ +++.++++++.++++ .+.+..|
T Consensus 128 gld~v~iSvka~dpe~h~kl~G~~~a~~ILe~L~~L~e-~~-~v~~~ivlIPGiND~eel~~ti~~L~~lg~~~V~L~~y 205 (404)
T TIGR03278 128 GVREVSFTVFATDPELRREWMKDPTPEASLQCLRRFCE-SC-EVHAASVIIPGVNDGDVLWKTCADLESWGAKALILMRF 205 (404)
T ss_pred CCCEEEEecccCCHHHHHHHhCCCCHHHHHHHHHHHHh-cC-CEEEEEEEeCCccCcHHHHHHHHHHHHCCCCEEEEEec
Confidence 99999999999999999999998777999999999999 57 89999999999998 678899999999988 4555566
Q ss_pred ecCC
Q 022377 162 MPFD 165 (298)
Q Consensus 162 ~p~~ 165 (298)
.+.+
T Consensus 206 ~~~g 209 (404)
T TIGR03278 206 ANTE 209 (404)
T ss_pred cccc
Confidence 5443
No 28
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=8.3e-16 Score=132.77 Aligned_cols=136 Identities=24% Similarity=0.370 Sum_probs=119.3
Q ss_pred CCCEEEEcCCccCccccHH-HHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcH
Q 022377 31 GVDKIRLTGGEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGH 109 (298)
Q Consensus 31 ~~~~v~~tGGEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~ 109 (298)
+...|++|||||+++.++. ++.+.+++. |+. +.+.|||+...+..+.+.+. +|.+.+.|++++++.|..+++...
T Consensus 83 ~~~gvt~SGGEP~~q~e~~~~~~~~ake~-Gl~-~~l~TnG~~~~~~~~~l~~~-~D~v~~DlK~~~~~~y~~~tg~~~- 158 (260)
T COG1180 83 SGGGVTFSGGEPTLQAEFALDLLRAAKER-GLH-VALDTNGFLPPEALEELLPL-LDAVLLDLKAFDDELYRKLTGADN- 158 (260)
T ss_pred CCCEEEEECCcchhhHHHHHHHHHHHHHC-CCc-EEEEcCCCCCHHHHHHHHhh-cCeEEEeeccCChHHHHHHhCCCc-
Confidence 5689999999999999966 999999995 996 99999998888888888885 999999999999998999998766
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEEecCC--CHhHHHHHHHHHhhCCC--eeEEEeeecCCCCCCcc
Q 022377 110 EKVMESINAAIEVGYNPVKVNCVVMRGF--NDDEICDFVELTRDRPI--NIRFIEFMPFDGNVWNV 171 (298)
Q Consensus 110 ~~v~~~i~~l~~~g~~~v~i~~vi~~~~--n~~~i~~i~~~~~~~g~--~~~~~~~~p~~~~~~~~ 171 (298)
+.++++++.+.+.|+ ++.+++++.||. +.+++.++++|+.+++. .+.+..|.|.+...|.+
T Consensus 159 ~~vl~~~~~l~~~g~-~ve~r~lviPg~~d~~e~i~~i~~~i~~~~~~~p~~~l~fhp~~~~~~~p 223 (260)
T COG1180 159 EPVLENLELLADLGV-HVEIRTLVIPGYNDDEEEIRELAEFIADLGPEIPIHLLRFHPDYKLKDLP 223 (260)
T ss_pred HHHHHHHHHHHcCCC-eEEEEEEEECCCCCCHHHHHHHHHHHHhcCCcccEEEeccccCccccccC
Confidence 999999999999999 999999999987 45789999999998554 57777888877766643
No 29
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.71 E-value=1.3e-15 Score=137.17 Aligned_cols=151 Identities=21% Similarity=0.372 Sum_probs=120.5
Q ss_pred CCCCHHHHHHHHHHHHh---CCCCEEEEcC-CccCcccc-HHHHHHHHhcc----CCCCcEEEEeCccchHhhHHHHHHc
Q 022377 13 QLLSLNEILRLAYLFVT---SGVDKIRLTG-GEPTVRKD-IEEACFHLSKL----KGLKTLAMTTNGLTLARKLPKLKES 83 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~---~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~----~~~~~v~i~TNG~ll~~~~~~l~~~ 83 (298)
..|+.+|+..-+-.+.. .++..|.|+| ||||++++ +.++++++.+. .+...++++|||. .+.+++|.+.
T Consensus 127 r~lt~~EI~~qv~~~~~~~~~~v~~Vvf~GmGEPLln~d~v~~~i~~l~~~~~~~~g~~~itisTnG~--~~~i~~L~~~ 204 (343)
T PRK14469 127 RNLTTGEIVSQILAMEKEEKKKVGNVVYMGMGEPLLNYENVIKSIKILNHKKMKNIGIRRITISTVGI--PEKIIQLAEE 204 (343)
T ss_pred ccCCHHHHHHHHHHHHHhccCCcCeEEEEccChhhhhHHHHHHHHHHHhchhcccCCCCeEEEECCCC--hHHHHHHHhh
Confidence 45888887665433322 3578999999 99999987 66999998642 2333599999995 6788999998
Q ss_pred CCC-eEEEecCCCCHHhhhhhcC---CCcHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCH--hHHHHHHHHHhhCCCee
Q 022377 84 GLT-SVNISLDTLVPAKFEFLTR---RKGHEKVMESINAAIEV-GYNPVKVNCVVMRGFND--DEICDFVELTRDRPINI 156 (298)
Q Consensus 84 ~~~-~v~iSldg~~~~~~~~ir~---~~~~~~v~~~i~~l~~~-g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~g~~~ 156 (298)
+++ .+.||||+++++.++.+++ ..+++.++++++.+.+. +. ++.+++++.+|.|+ +++.++++++...++.+
T Consensus 205 ~l~~~LaiSL~a~~~e~r~~i~p~~~~~~l~~Il~~l~~~~~~~~~-~v~i~yvlI~g~NDs~ed~~~La~llk~~~~~V 283 (343)
T PRK14469 205 GLDVKLALSLHAPTNFKRDQIVPLNKKYSIEEIINAVKIYQKKTGN-RVTIEYILIKGFNDEIEDAKKLAELLKGLKVFV 283 (343)
T ss_pred CCCcEEEEEeCCCCHHHHHhhcCcCCCCCHHHHHHHHHHHHHHhCC-eEEEEEEEECCCCCCHHHHHHHHHHHhccCcEE
Confidence 988 6999999999999998763 34699999999987765 66 89999999998887 47999999999888877
Q ss_pred EEEeeecCCC
Q 022377 157 RFIEFMPFDG 166 (298)
Q Consensus 157 ~~~~~~p~~~ 166 (298)
.+++|.|...
T Consensus 284 nLIpynp~~~ 293 (343)
T PRK14469 284 NLIPVNPTVP 293 (343)
T ss_pred EEEecCCCCc
Confidence 7777777543
No 30
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=99.70 E-value=1.9e-15 Score=136.02 Aligned_cols=156 Identities=20% Similarity=0.313 Sum_probs=122.8
Q ss_pred CCCCCHHHHHHHHHHHHh------CCCCEEEEcC-CccCcccc-HHHHHHHHhccCC--C--CcEEEEeCccchHhhHHH
Q 022377 12 PQLLSLNEILRLAYLFVT------SGVDKIRLTG-GEPTVRKD-IEEACFHLSKLKG--L--KTLAMTTNGLTLARKLPK 79 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~------~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~--~--~~v~i~TNG~ll~~~~~~ 79 (298)
...++.+|+..-+..+.. .++..|.|.| ||||++++ +.++++.+.+..+ + ..++++|||.. ..+.+
T Consensus 130 ~r~lt~~Eiv~qv~~~~~~~~~~~~~v~nVvfmGmGEPLln~d~v~~~l~~l~~~~g~~i~~~~itisT~G~~--~~i~~ 207 (355)
T TIGR00048 130 NRNLEASEIIGQVLRVQKINNETGERVSNVVFMGMGEPLLNLNEVVKAMEIMNDDFGLGISKRRITISTSGVV--PKIDI 207 (355)
T ss_pred CCCCCHHHHHHHHHHHHHHhhhcCCCeeEEEEecCCchhhCHHHHHHHHHHhhcccccCcCCCeEEEECCCch--HHHHH
Confidence 456899998775443322 2366799998 99999976 6699998875333 4 25999999965 56788
Q ss_pred HHHcCCC-eEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHH-HHcCCCCEEEEEEEecCCCH--hHHHHHHHHHhhC
Q 022377 80 LKESGLT-SVNISLDTLVPAKFEFLTRR---KGHEKVMESINAA-IEVGYNPVKVNCVVMRGFND--DEICDFVELTRDR 152 (298)
Q Consensus 80 l~~~~~~-~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l-~~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~ 152 (298)
|.+.+++ .+.||||+++++.|+++.+. .+++.++++++.+ .+.|. ++.+++++.+|.|+ +++.+++++++.+
T Consensus 208 l~~~~l~~~LaiSL~a~~~e~r~~l~p~~~~~~l~~ll~~l~~~~~~~g~-~VtieyvLI~GvNDs~e~a~~La~llk~l 286 (355)
T TIGR00048 208 LADKMLQVALAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLNKTGR-RVTFEYVLLDGVNDQVEHAEELAELLKGT 286 (355)
T ss_pred HHHhCCCcEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCC-EEEEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 8887776 57899999999999998764 3589999999865 45787 99999999999997 7899999999998
Q ss_pred CCeeEEEeeecCCCCCCc
Q 022377 153 PINIRFIEFMPFDGNVWN 170 (298)
Q Consensus 153 g~~~~~~~~~p~~~~~~~ 170 (298)
++.+.+++|.|.+...|.
T Consensus 287 ~~~VnLIPynp~~~~~~~ 304 (355)
T TIGR00048 287 KCKVNLIPWNPFPEADYE 304 (355)
T ss_pred CCceEEEecccCCCCCCC
Confidence 888888888887665553
No 31
>PRK14468 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.70 E-value=1.6e-15 Score=135.91 Aligned_cols=154 Identities=19% Similarity=0.333 Sum_probs=120.1
Q ss_pred CCCCCCHHHHHHHHHHHHhC------CCCEEEEcC-CccCcccc-HHHHHHHHhccCCC----CcEEEEeCccchHhhHH
Q 022377 11 KPQLLSLNEILRLAYLFVTS------GVDKIRLTG-GEPTVRKD-IEEACFHLSKLKGL----KTLAMTTNGLTLARKLP 78 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~------~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~~----~~v~i~TNG~ll~~~~~ 78 (298)
....||.+|+...+..+... .+..|.|+| ||||++++ +.+.++.+.+..++ ..++++|||. .+.++
T Consensus 117 ~~r~Lt~~EI~~qv~~~~~~~g~~~~~i~~Vvf~GmGEPlln~~~v~~~i~~l~~~~g~~l~~r~itvST~G~--~~~i~ 194 (343)
T PRK14468 117 FGRNLTAAEILDQVLAVAGHEGISPREIRNVVLMGMGEPLLNYENVLKAARIMLHPQALAMSPRRVTLSTVGI--PKGIR 194 (343)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCcCcCCccEEEEeccCccccCHHHHHHHHHHhcccccccccCceEEEECCCC--hHHHH
Confidence 35779999997766544332 256899998 99999986 55888877442343 2489999993 45778
Q ss_pred HHHHcCCC-eEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHH-cCCCCEEEEEEEecCCCHh--HHHHHHHHHhh
Q 022377 79 KLKESGLT-SVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIE-VGYNPVKVNCVVMRGFNDD--EICDFVELTRD 151 (298)
Q Consensus 79 ~l~~~~~~-~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~-~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~ 151 (298)
++.+.++. .+.||||+++++.++++++. .++++++++++.+.+ .+. ++.+++++.+|.|++ ++.++++++..
T Consensus 195 ~L~~~~l~~~LaiSL~a~d~e~r~~i~p~~~~~~l~~ll~~l~~~~~~~~~-~V~ieyvLI~GvNDs~e~~~~L~~ll~~ 273 (343)
T PRK14468 195 RLAEEDLGVRLALSLHAPDEETRQRIIPTAHRYSIAEIMAAVRHYQAVTGR-RVTLEYTMLKGVNDHLWQAELLADLLRG 273 (343)
T ss_pred HHHHhCcCcEEEEEcCCCCHHHHHHhccccccCCHHHHHHHHHHHHHhcCC-eEEEEEEEeCCCcCCHHHHHHHHHHHhc
Confidence 88887766 69999999999999999843 358999999986655 455 899999999999875 58999999999
Q ss_pred CCCeeEEEeeecCCCC
Q 022377 152 RPINIRFIEFMPFDGN 167 (298)
Q Consensus 152 ~g~~~~~~~~~p~~~~ 167 (298)
+.+.+.+++|.|....
T Consensus 274 ~~~~VnLIPynp~~~~ 289 (343)
T PRK14468 274 LVSHVNLIPFNPWEGS 289 (343)
T ss_pred CCcEEEEEcCCCCCCC
Confidence 8888888877776543
No 32
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.69 E-value=2.8e-15 Score=134.93 Aligned_cols=159 Identities=23% Similarity=0.308 Sum_probs=124.8
Q ss_pred CCCCCCCHHHHHHHHHHHHh------CCCCEEEEcC-CccCcccc-HHHHHHHHhccCCC----CcEEEEeCccchHhhH
Q 022377 10 PKPQLLSLNEILRLAYLFVT------SGVDKIRLTG-GEPTVRKD-IEEACFHLSKLKGL----KTLAMTTNGLTLARKL 77 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~------~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~~----~~v~i~TNG~ll~~~~ 77 (298)
.....|+.+|+..-+..... .++..|.|+| ||||++++ +.++++.+++..|+ ..++|+|||.. ..+
T Consensus 132 ~~~r~lt~~EIv~qv~~~~~~~~~~g~~v~~Vv~~GmGEPLln~~~v~~~l~~l~~~~g~~~s~r~itvsT~G~~--~~i 209 (356)
T PRK14455 132 GLKRDLEAGEIVAQVMLVQKYLDETEERVSHIVVMGIGEPFDNYDNVMDFLRIINDDKGLAIGARHITVSTSGIA--PKI 209 (356)
T ss_pred CCCccCCHHHHHHHHHHHHHHHhhcCCCcceEEEeccccccCCHHHHHHHHHHHhcccCcccCCCceEEEecCch--HhH
Confidence 34667999999875543221 2467899997 99999865 67999999873355 14899999964 345
Q ss_pred HHHHHcCCC-eEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCH--hHHHHHHHHHh
Q 022377 78 PKLKESGLT-SVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEV-GYNPVKVNCVVMRGFND--DEICDFVELTR 150 (298)
Q Consensus 78 ~~l~~~~~~-~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~-g~~~v~i~~vi~~~~n~--~~i~~i~~~~~ 150 (298)
..+.+.++. .+.+|||+++++.++++.+. .+++.++++++.+.+. +. ++.+++++.+|.|+ +++.++++++.
T Consensus 210 ~~l~d~~l~~~LaiSL~a~~~e~r~~l~pi~~~~~l~~Il~~l~~~~~~~~~-~v~iey~lI~gvNDs~ed~~~La~ll~ 288 (356)
T PRK14455 210 YDFADEGLQINLAISLHAPNNELRSSLMPINRAYPLEKLMEAIEYYIEKTNR-RVTFEYILLGGVNDQVEHAEELADLLK 288 (356)
T ss_pred HHHHhcccCeeEEeccCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCC-eEEEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 566665543 46799999999999987763 4589999999988774 55 89999999999998 68999999999
Q ss_pred hCCCeeEEEeeecCCCCCCcc
Q 022377 151 DRPINIRFIEFMPFDGNVWNV 171 (298)
Q Consensus 151 ~~g~~~~~~~~~p~~~~~~~~ 171 (298)
.++..+.+++|.|.+..+|..
T Consensus 289 ~l~~~VnLIPynp~~~~ky~~ 309 (356)
T PRK14455 289 GIKCHVNLIPVNPVPERDYVR 309 (356)
T ss_pred cCCCcEEEEecCcCCCCCCcC
Confidence 988888889999987776654
No 33
>PRK14460 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.69 E-value=2e-15 Score=135.75 Aligned_cols=155 Identities=21% Similarity=0.357 Sum_probs=124.2
Q ss_pred CCCCCHHHHHHHHHHHH----hC--C---CCEEEEcC-CccCcccc-HHHHHHHHhccCCC----CcEEEEeCccchHhh
Q 022377 12 PQLLSLNEILRLAYLFV----TS--G---VDKIRLTG-GEPTVRKD-IEEACFHLSKLKGL----KTLAMTTNGLTLARK 76 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~----~~--~---~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~~----~~v~i~TNG~ll~~~ 76 (298)
...||.+|+...+.... .. | +..|.|+| ||||++++ +.+.++.+++..|+ ..++|+|||. .+.
T Consensus 127 ~rnlt~~EI~~qv~~~~~~~~~~g~g~~~i~nIvfmGmGEPLln~~~v~~~l~~l~~~~Gl~~~~r~itvsT~G~--~~~ 204 (354)
T PRK14460 127 ERNMTMGEILGQVLVAREHLGDNGPDHPILRNLVFMGMGEPLLNLDEVMRSLRTLNNEKGLNFSPRRITVSTCGI--EKG 204 (354)
T ss_pred CcCCCHHHHHHHHHHHHHHHhhccCCCcceeEEEEecCCcccCCHHHHHHHHHHHhhhhccCCCCCeEEEECCCC--hHH
Confidence 45799999887663222 11 2 57899998 99999987 56999988764354 1599999996 567
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhhhhhcCCC---cHHHHHHHHHHHH-HcCCCCEEEEEEEecCCCHh--HHHHHHHHHh
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAI-EVGYNPVKVNCVVMRGFNDD--EICDFVELTR 150 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~-~~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~ 150 (298)
++.|.+.++..+.||||+++++.++++.+.. +++.++++++... +.+. ++.+++++.+|.|++ ++.++++++.
T Consensus 205 i~~L~~~~l~~L~iSLha~~~e~r~~i~p~~~~~~l~~ll~al~~~~~~~~~-~v~iey~LI~GvNDs~ed~~~l~~~l~ 283 (354)
T PRK14460 205 LRELGESGLAFLAVSLHAPNQELRERIMPKAARWPLDDLIAALKSYPLKTRE-RVTFEYLLLGGVNDSLEHARELVRLLS 283 (354)
T ss_pred HHHHHhCCCcEEEEeCCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhcCC-eEEEEEEEECCCCCCHHHHHHHHHHHh
Confidence 8899998988999999999999999997653 5899999888654 4566 899999999999985 7999999999
Q ss_pred hCCCeeEEEeeecCCCCCC
Q 022377 151 DRPINIRFIEFMPFDGNVW 169 (298)
Q Consensus 151 ~~g~~~~~~~~~p~~~~~~ 169 (298)
.++..+.+++|.|..+..|
T Consensus 284 ~~~~~VnLIpyn~~~g~~y 302 (354)
T PRK14460 284 RTKCKLNLIVYNPAEGLPY 302 (354)
T ss_pred cCCCcEEEEcCCCCCCCCC
Confidence 9888888888888755555
No 34
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=99.68 E-value=2.2e-15 Score=126.28 Aligned_cols=157 Identities=20% Similarity=0.324 Sum_probs=131.8
Q ss_pred CCCCCHHHHHHHHHHHHhCC-----CCEEEEcCCccCccc--cHHHHHHHHhccC----CCCcEEEEeCccch-HhhHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSG-----VDKIRLTGGEPTVRK--DIEEACFHLSKLK----GLKTLAMTTNGLTL-ARKLPK 79 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~-----~~~v~~tGGEPll~~--~~~~ii~~~~~~~----~~~~v~i~TNG~ll-~~~~~~ 79 (298)
...++.+++.+.++.+.+.+ +..+.|+||||++++ .+.++++++++.. +. .+.+.|||.++ ++.++.
T Consensus 27 ~~~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~tn~~~~~~~~~~~ 105 (216)
T smart00729 27 LRSRYLEALVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDV-EITIETRPGTLTEELLEA 105 (216)
T ss_pred hhHHHHHHHHHHHHHHHhcccCCcceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCe-EEEEEeCcccCCHHHHHH
Confidence 56678888888888875543 467899999999998 5789999998853 34 48899998877 568999
Q ss_pred HHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcC-CCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCCe-e
Q 022377 80 LKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG-YNPVKVNCVVM-RGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 80 l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g-~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
|.+++++.+.+|+++.+++.++.+++..++++++++++.++++| + .+.+.+++. ++.+.+++.++++++.+.|++ +
T Consensus 106 l~~~~~~~i~isl~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~-~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 184 (216)
T smart00729 106 LKEAGVNRVSLGVQSGSDEVLKAINRGHTVEDVLEAVEKLREAGPI-KVSTDLIVGLPGETEEDFEETLKLLKELGPDRV 184 (216)
T ss_pred HHHcCCCeEEEecccCCHHHHHHhcCCCCHHHHHHHHHHHHHhCCc-ceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 99999999999999999999999888888999999999999999 7 777766554 347899999999999999985 7
Q ss_pred EEEeeecCCCCCCc
Q 022377 157 RFIEFMPFDGNVWN 170 (298)
Q Consensus 157 ~~~~~~p~~~~~~~ 170 (298)
.+..++|..++.+.
T Consensus 185 ~~~~~~p~~~t~~~ 198 (216)
T smart00729 185 SIFPLSPRPGTPLA 198 (216)
T ss_pred EeeeeeeCCCChHH
Confidence 88889988776554
No 35
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=99.66 E-value=6.4e-15 Score=131.41 Aligned_cols=168 Identities=18% Similarity=0.240 Sum_probs=126.3
Q ss_pred CCCCCHHHHHHHHHHHHhC-CCCEEEEcCCccCcc--ccHHHHHHHHhccCCCCcEEEEe-----Cccch-HhhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTS-GVDKIRLTGGEPTVR--KDIEEACFHLSKLKGLKTLAMTT-----NGLTL-ARKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~-~~~~v~~tGGEPll~--~~~~~ii~~~~~~~~~~~v~i~T-----NG~ll-~~~~~~l~~ 82 (298)
...++.+++.++++.+.+. ++..|.|||||||++ +++.++++.+++...+..+.+.| |+.++ ++.++.|.+
T Consensus 116 ~~~l~~~e~~~~i~~i~~~~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~ 195 (321)
T TIGR03822 116 LGVLSPAELDAAFAYIADHPEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKT 195 (321)
T ss_pred cCcCCHHHHHHHHHHHHhCCCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHH
Confidence 3578999999999999864 789999999999996 46889999999853343456766 56666 567899999
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH--hHHHHHHHHHhhCCCe-eEEE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND--DEICDFVELTRDRPIN-IRFI 159 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~g~~-~~~~ 159 (298)
+|.. +.||+|+.++. .+ ++.++++++.|+++|+ .+.+++|+++|.|+ +++.++.+++.+.|+. +.+.
T Consensus 196 ~g~~-v~i~l~~~h~~---el-----~~~~~~ai~~L~~~Gi-~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~ 265 (321)
T TIGR03822 196 SGKT-VYVALHANHAR---EL-----TAEARAACARLIDAGI-PMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLH 265 (321)
T ss_pred cCCc-EEEEecCCChh---hc-----CHHHHHHHHHHHHcCC-EEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEE
Confidence 8854 89999996542 11 5899999999999999 99999999987665 4799999999999994 5566
Q ss_pred eeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 160 EFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 160 ~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
.+.|.++............++++.+.+..+
T Consensus 266 ~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~ 295 (321)
T TIGR03822 266 HLDLAPGTAHFRVTIEEGQALVRALRGRIS 295 (321)
T ss_pred ecCCCCCcccccCcHHHHHHHHHHHHHhCC
Confidence 777886654332222223344455544443
No 36
>PRK14459 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.65 E-value=1.3e-14 Score=130.29 Aligned_cols=172 Identities=19% Similarity=0.271 Sum_probs=131.6
Q ss_pred CCCCCHHHHHHHHHHHHh---C--------CCCEEEEcC-CccCcccc-HHHHHHHHhcc----CCCC--cEEEEeCccc
Q 022377 12 PQLLSLNEILRLAYLFVT---S--------GVDKIRLTG-GEPTVRKD-IEEACFHLSKL----KGLK--TLAMTTNGLT 72 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~---~--------~~~~v~~tG-GEPll~~~-~~~ii~~~~~~----~~~~--~v~i~TNG~l 72 (298)
...|+.+|+...+..+.+ . .+..|.|.| ||||++.+ +.++++.+++. .++. .++++|.|
T Consensus 146 ~RnLt~~EIv~Qv~~~~~~~~~~~~~~~~~~i~nVvfmGmGEPLlN~d~V~~~i~~l~~~~~~g~gis~r~ITvST~G-- 223 (373)
T PRK14459 146 TRNLSTAEIVEQVRAAARALRDGEVPGGPGRLSNVVFMGMGEPLANYKRVVAAVRRITAPAPEGLGISARNVTVSTVG-- 223 (373)
T ss_pred CCccCHHHHHHHHHHHHHHhhhcccccCCCceeEEEEecCCcchhhHHHHHHHHHHHhCcccccCCccCCEEEEECcC--
Confidence 466999999877665543 1 156799999 99999766 66999998761 2442 47788888
Q ss_pred hHhhHHHHHHcCCC-eEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHH-HcCCCCEEEEEEEecCCCHh--HHHHH
Q 022377 73 LARKLPKLKESGLT-SVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAI-EVGYNPVKVNCVVMRGFNDD--EICDF 145 (298)
Q Consensus 73 l~~~~~~l~~~~~~-~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~-~~g~~~v~i~~vi~~~~n~~--~i~~i 145 (298)
+...+++|.+.++. .+.|||++++++.++++.+. .+++.++++++.+. +.|. ++.+++++.+|.|++ +..++
T Consensus 224 l~~~i~~la~~~l~~~LavSLha~d~e~R~~l~p~n~~~~l~~ll~a~~~~~~~~gr-rv~ieyvLi~GvNDs~e~a~~L 302 (373)
T PRK14459 224 LVPAIRKLADEGLPVTLAVSLHAPDDELRDELVPVNTRWKVDEVLDAARYYADATGR-RVSIEYALIRDINDQPWRADLL 302 (373)
T ss_pred chhHHHHHHHhcCCeEEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHHhCC-EEEEEEEEeCCCCCCHHHHHHH
Confidence 33567788887765 79999999999999999984 45999999977776 5688 999999999999975 48889
Q ss_pred HHHHhhC---CCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHH
Q 022377 146 VELTRDR---PINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 146 ~~~~~~~---g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~ 186 (298)
+++++.+ .+.+.+++|.|.++..|.........++.+.+.+
T Consensus 303 ~~llk~~~~~~~~VNLIpyNp~~~~~y~~~~~~~~~~F~~~L~~ 346 (373)
T PRK14459 303 GKKLHGRGGGWVHVNLIPLNPTPGSKWTASPPEVEREFVRRLRA 346 (373)
T ss_pred HHHHhhccCCCeEEEEEccCCCCCCCCcCCCHHHHHHHHHHHHH
Confidence 9999887 5788899999988777765433334444444443
No 37
>PRK14470 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.65 E-value=2.1e-14 Score=128.06 Aligned_cols=149 Identities=21% Similarity=0.298 Sum_probs=116.4
Q ss_pred CCCHHHHH-HHHHHHHh--CCCCEEEEcC-CccCcccc-HHHHHHHHhcc-----CCCCcEEEEeCccchHhhHHHHHHc
Q 022377 14 LLSLNEIL-RLAYLFVT--SGVDKIRLTG-GEPTVRKD-IEEACFHLSKL-----KGLKTLAMTTNGLTLARKLPKLKES 83 (298)
Q Consensus 14 ~l~~e~~~-~~i~~~~~--~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~-----~~~~~v~i~TNG~ll~~~~~~l~~~ 83 (298)
.++.+|+. +++..... ..+..|.|+| ||||++.+ +.++++.+++. .+. .++|+|||.. ..+.++.+.
T Consensus 124 ~l~~~EI~~qi~~~~~~~~~~i~nIvfmGmGEPllN~d~v~~~i~~l~~~~~~~~~~~-~ItVsTnG~~--p~i~~l~~~ 200 (336)
T PRK14470 124 SLRSWEIVAQLLAVRADSERPITGVVFMGQGEPFLNYDEVLRAAYALCDPAGARIDGR-RISISTAGVV--PMIRRYTAE 200 (336)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEecCccccCHHHHHHHHHHHhCccccccCCC-ceEEEecCCh--HHHHHHHhc
Confidence 34555544 44443332 2468999999 99999866 67888888752 244 5999999974 356666666
Q ss_pred CC-CeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHh--HHHHHHHHHhhCCCeeE
Q 022377 84 GL-TSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDD--EICDFVELTRDRPINIR 157 (298)
Q Consensus 84 ~~-~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~~g~~~~ 157 (298)
+. +.+.||||+++++.++++.+. .+++.++++++.+.+.+. ++.+.+++.+|.|++ ++.++.+++..+.+.+.
T Consensus 201 ~~~~~LaiSLhA~~~e~r~~I~p~~~~~~le~il~ai~~~~~~~r-ri~ieyvLI~GvNDseeda~~La~llk~l~~~vn 279 (336)
T PRK14470 201 GHKFRLCISLNAAIPWKRRALMPIEQGFPLDELVEAIREHAALRG-RVTLEYVMISGVNVGEEDAAALGRLLAGIPVRLN 279 (336)
T ss_pred CCCceEEEecCCCCHHHHHHhcCccccCCHHHHHHHHHHHHHhCC-CeEEEEEEEecccCCHHHHHHHHHHHhcCCCeEE
Confidence 65 779999999999999999764 359999999999999877 899999999998864 59999999998888888
Q ss_pred EEeeecCCC
Q 022377 158 FIEFMPFDG 166 (298)
Q Consensus 158 ~~~~~p~~~ 166 (298)
.+.|.|..+
T Consensus 280 lI~~N~~~~ 288 (336)
T PRK14470 280 PIAVNDATG 288 (336)
T ss_pred EeccCCCCC
Confidence 888888544
No 38
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=99.64 E-value=2.7e-14 Score=123.13 Aligned_cols=139 Identities=24% Similarity=0.335 Sum_probs=119.0
Q ss_pred CCCCCCHHHHHHHHHHHHhC------CCCEEEEcC-CccCccccHHHHHHHHhccCC-CCcEEEEeCccchHhhHHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTS------GVDKIRLTG-GEPTVRKDIEEACFHLSKLKG-LKTLAMTTNGLTLARKLPKLKE 82 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~------~~~~v~~tG-GEPll~~~~~~ii~~~~~~~~-~~~v~i~TNG~ll~~~~~~l~~ 82 (298)
++.....+.+..-++.+... .+..|+|+| |||+|+|++-++++.+++. + +. +.+.|||++ ++..+.|.
T Consensus 53 ~~efi~~~~I~~~~~~~~~~~g~ea~~pd~vtis~~GEPTLy~~L~elI~~~k~~-g~~~-tflvTNgsl-pdv~~~L~- 128 (296)
T COG0731 53 RPEFIVEESILEELKLLLGYKGDEATEPDHVTISLSGEPTLYPNLGELIEEIKKR-GKKT-TFLVTNGSL-PDVLEELK- 128 (296)
T ss_pred CCceecHHHHHHHHHHHhcccccccCCCCEEEEeCCCCcccccCHHHHHHHHHhc-CCce-EEEEeCCCh-HHHHHHhc-
Confidence 45567778887777777665 578999997 9999999999999999996 6 64 999999987 77777777
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCC---cHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCHhH--HHHHHHHHhhCCCe
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAIEV-GYNPVKVNCVVMRGFNDDE--ICDFVELTRDRPIN 155 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~~-g~~~v~i~~vi~~~~n~~~--i~~i~~~~~~~g~~ 155 (298)
..+.+.+|||++++++|+++.+.. +|+++++++..+++. .- +..+++++.+|.|.++ ++++++++.....+
T Consensus 129 -~~dql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L~~~~~~~~~-~~vir~tlvkg~N~~~e~~~~~a~ll~~~~Pd 205 (296)
T COG0731 129 -LPDQLYVSLDAPDEKTFRRINRPHKKDSWEKILEGLEIFRSEYKG-RTVIRTTLVKGINDDEEELEEYAELLERINPD 205 (296)
T ss_pred -cCCEEEEEeccCCHHHHHHhcCCCCcchHHHHHHHHHHhhhcCCC-cEEEEEEEeccccCChHHHHHHHHHHHhcCCC
Confidence 489999999999999999998763 499999999999997 55 7999999999999876 99999999986654
No 39
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=99.63 E-value=2.2e-14 Score=128.40 Aligned_cols=155 Identities=21% Similarity=0.329 Sum_probs=119.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhCC--CCEEEEcC-CccCccccHHHHHHHHhccC--C--CCcEEEEeCccch-HhhHHHHH
Q 022377 10 PKPQLLSLNEILRLAYLFVTSG--VDKIRLTG-GEPTVRKDIEEACFHLSKLK--G--LKTLAMTTNGLTL-ARKLPKLK 81 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~--~~~v~~tG-GEPll~~~~~~ii~~~~~~~--~--~~~v~i~TNG~ll-~~~~~~l~ 81 (298)
+....|+.+|+...+..+...+ +..|+|+| ||||+++++.++++.+.+.. + ..+++|+|+|..- -+.+....
T Consensus 123 g~~rnLt~~EIv~qv~~~~~~~~~i~~IvfmGmGEPLln~~v~~~i~~l~~~~~~~~~~r~itVsT~G~~~~i~~l~~~~ 202 (347)
T PRK14453 123 GLKRNLTADEITDQLLYFYLNGHRLDSISFMGMGEALANPELFDALKILTDPNLFGLSQRRITISTIGIIPGIQRLTQEF 202 (347)
T ss_pred CCcccCCHHHHHHHHHHHHhcCCCcceEEEeecCCccCCHHHHHHHHHHhcccccCCCCCcEEEECCCCchhHHHHHhhc
Confidence 3456799999988777665554 78999999 99999999889998887732 2 2258999999653 23333332
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCC---cHHHHHHHHHHHHH-cCCCCEEEEEEEecCCCHh--HHHHHHHHHhhC---
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAIE-VGYNPVKVNCVVMRGFNDD--EICDFVELTRDR--- 152 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~-~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~~--- 152 (298)
. .++ +.+||++++++.++++.+.. .++.++++++...+ .|. ++.+++++.+|.|++ ++.+++++++.+
T Consensus 203 ~-~v~-LalSLha~dd~~r~~l~pi~~~~~L~~ll~~~~~~l~~~~~-~V~iry~LI~GvNDs~e~a~~L~~~lk~l~~~ 279 (347)
T PRK14453 203 P-QVN-LTFSLHSPFESQRSELMPINKRFPLNEVMKTLDEHIRHTGR-KVYIAYIMLEGVNDSKEHAEAVVGLLRNRGSW 279 (347)
T ss_pred c-CcC-EEEEecCCCHHHHHHhcCccccccHHHHHHHHHHHHHhcCC-cEEEEEEeECCCCCCHHHHHHHHHHHhhcccc
Confidence 2 345 88899999999998988754 37888887777665 677 999999999999987 899999999987
Q ss_pred --CCeeEEEeeecCCCC
Q 022377 153 --PINIRFIEFMPFDGN 167 (298)
Q Consensus 153 --g~~~~~~~~~p~~~~ 167 (298)
...+.+++|.|.+..
T Consensus 280 ~~~~~VnLIPyn~~~~~ 296 (347)
T PRK14453 280 EHLYHVNLIPYNSTDKT 296 (347)
T ss_pred CCcceEEEecCCCCCCC
Confidence 346777888877653
No 40
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.63 E-value=4.2e-14 Score=126.99 Aligned_cols=154 Identities=23% Similarity=0.355 Sum_probs=118.6
Q ss_pred CCCCCHHHHHHHHHHHHh-CCCCEEEEcC-CccCcccc-HHHHHHHHhccCCC----CcEEEEeCccchHhhHHHHHHcC
Q 022377 12 PQLLSLNEILRLAYLFVT-SGVDKIRLTG-GEPTVRKD-IEEACFHLSKLKGL----KTLAMTTNGLTLARKLPKLKESG 84 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~~----~~v~i~TNG~ll~~~~~~l~~~~ 84 (298)
...++.+|+...+..+.+ .++..|.|+| ||||++.+ +.+.++.+.+..++ ..+.++|||. ++ .+.++....
T Consensus 128 ~r~lt~~EI~~qv~~~~~~~~i~~IvfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl-~~-~i~~l~~~~ 205 (349)
T PRK14463 128 TRNLTTAEIVNQVCAVKRDVPVRNIVFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGL-VP-EMEELGREV 205 (349)
T ss_pred CCCCCHHHHHHHHHHHHhcCCccEEEEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCc-hH-HHHHHhhcc
Confidence 466999999876655443 4688999998 99999874 66888888653354 2489999994 44 444555543
Q ss_pred CCeEEEecCCCCHHhhhhhcC---CCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH--hHHHHHHHHHhhCCCeeEEE
Q 022377 85 LTSVNISLDTLVPAKFEFLTR---RKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND--DEICDFVELTRDRPINIRFI 159 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~---~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~g~~~~~~ 159 (298)
...+.||||+++++.++++.+ ..++++++++++.....+..++.+++++.+|.|+ +++.++++++.++++.+.++
T Consensus 206 ~~~LaiSL~a~~~e~r~~I~pink~~~l~~l~~a~~~~~~~~~~~v~ieyvLI~GvNDs~e~~~~L~~ll~~l~~~vnlI 285 (349)
T PRK14463 206 TVNLAVSLNATTDEVRDRIMPVNRRYPLAELLAACKAFPLPGRRKITIEYVMIRGLNDSLEDAKRLVRLLSDIPSKVNLI 285 (349)
T ss_pred CeEEEEeCCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhcCCeEEEEEEEeCCCCCCHHHHHHHHHHHhccCceEEEE
Confidence 335779999999999999854 3458999998888776543389999999999998 78999999999988888888
Q ss_pred eeecCCCC
Q 022377 160 EFMPFDGN 167 (298)
Q Consensus 160 ~~~p~~~~ 167 (298)
+|.|.++.
T Consensus 286 Pyn~~~~~ 293 (349)
T PRK14463 286 PFNEHEGC 293 (349)
T ss_pred ecCCCCCC
Confidence 88777654
No 41
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.63 E-value=3.8e-14 Score=125.87 Aligned_cols=157 Identities=22% Similarity=0.300 Sum_probs=120.1
Q ss_pred CCCCCHHHHHHHHHHHHhC-CCCEEEEcC-CccCcccc-HHHHHHHHhccCCC----CcEEEEeCccchHhhHHHHHHcC
Q 022377 12 PQLLSLNEILRLAYLFVTS-GVDKIRLTG-GEPTVRKD-IEEACFHLSKLKGL----KTLAMTTNGLTLARKLPKLKESG 84 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~-~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~~----~~v~i~TNG~ll~~~~~~l~~~~ 84 (298)
...||.+|+...+..+.+. ++..|.|+| ||||++.+ +.+.++.+.+..++ ..++|+|||.. ..++++.+..
T Consensus 128 ~rnLt~~EIl~Qv~~~~~~~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~~g~~~s~r~ItVsT~G~~--~~i~~l~~~~ 205 (345)
T PRK14466 128 TGNLTAAQILNQIYSLPERDKLTNLVFMGMGEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLK--KGLKRFLEES 205 (345)
T ss_pred CCCCCHHHHHHHHHhhhhcCCCCeEEEeeeCcCcccHHHHHHHHHHHhhccccCcCCceEEEEcCCCc--hHHHHHhhcc
Confidence 3459999998777666432 478999999 99998755 66777777654344 25999999943 2233433323
Q ss_pred CCeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHh--HHHHHHHHHhhCCCeeEEE
Q 022377 85 LTSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDD--EICDFVELTRDRPINIRFI 159 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~~g~~~~~~ 159 (298)
-..+.+||++++++..+++.+. .+++.++++++...+....++.+.+++.+|.|+. ++.+++++++..++.+.++
T Consensus 206 ~~~LavSLha~~~e~R~~i~P~~~~~~l~~l~~al~~y~~~~~rri~~Ey~Li~gvND~~e~a~~L~~ll~~~~~~VNLI 285 (345)
T PRK14466 206 ECHLAISLHSPFPEQRRELMPAEKAFSIKEIIDLLKNYDFSKQRRVSFEYIVFKGLNDSLKHAKELVKLLRGIDCRVNLI 285 (345)
T ss_pred CcEEEEEcCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHhhCCEEEEEEEEeCCCCCCHHHHHHHHHHHcCCCceEEEE
Confidence 3468999999999999999875 3489999999998765433899999999999975 5999999999988899999
Q ss_pred eeecCCCCCCc
Q 022377 160 EFMPFDGNVWN 170 (298)
Q Consensus 160 ~~~p~~~~~~~ 170 (298)
.|.|..+..+.
T Consensus 286 p~Np~~~~~~~ 296 (345)
T PRK14466 286 RFHAIPGVDLE 296 (345)
T ss_pred ecCCCCCCCCc
Confidence 99987665443
No 42
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.63 E-value=4.2e-14 Score=126.55 Aligned_cols=156 Identities=22% Similarity=0.348 Sum_probs=120.7
Q ss_pred CCCCCHHHHHHHHHHHHhC---CCCEEEEcC-CccCcccc-HHHHHHHHhccCCC--CcEEEEeCccchHhhHHHHHHcC
Q 022377 12 PQLLSLNEILRLAYLFVTS---GVDKIRLTG-GEPTVRKD-IEEACFHLSKLKGL--KTLAMTTNGLTLARKLPKLKESG 84 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~---~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~~--~~v~i~TNG~ll~~~~~~l~~~~ 84 (298)
...++.+|+..-+..+... ++..|+|+| ||||++++ +.+.++.+.+..++ ..++++|+| +.+.+++|.+..
T Consensus 126 ~rnlt~~EIv~qv~~~~~~~~~~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~~i~~r~itvST~G--~~~~i~~L~~~~ 203 (345)
T PRK14457 126 KRSLKAHEIVDQVLTVQEDMQRRVSHVVFMGMGEPLLNIDEVLAAIRCLNQDLGIGQRRITVSTVG--VPKTIPQLAELA 203 (345)
T ss_pred ccccCHHHHHHHHHHHHHHhcCCCCEEEEEecCccccCHHHHHHHHHHHhcccCCccCceEEECCC--chhhHHHHHhhh
Confidence 3468999987766655442 468999999 99999987 55999988663355 248999999 434577776655
Q ss_pred ------C-CeEEEecCCCCHHhhhhhcCCC---cHHHHHHHHHH-HHHcCCCCEEEEEEEecCCCH--hHHHHHHHHHhh
Q 022377 85 ------L-TSVNISLDTLVPAKFEFLTRRK---GHEKVMESINA-AIEVGYNPVKVNCVVMRGFND--DEICDFVELTRD 151 (298)
Q Consensus 85 ------~-~~v~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~-l~~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~ 151 (298)
. ..+.+||++++++.++++.+.. +++.++++++. +.+.|. ++.+++++.+|.|+ +++.++++++..
T Consensus 204 ~~~~~~~~~~laiSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~y~~~~gr-~I~iey~LIpGvNDs~e~a~~La~~l~~ 282 (345)
T PRK14457 204 FQRLGRLQFTLAVSLHAPNQKLRETLIPSAKNYPIENLLEDCRHYVAITGR-RVSFEYILLGGVNDLPEHAEELANLLRG 282 (345)
T ss_pred hhhcccCceEEEEEeCCCCHHHHHHhcCCccCCCHHHHHHHHHHHHHHhCC-EEEEEEEEECCcCCCHHHHHHHHHHHhc
Confidence 2 3599999999999999997643 38888877755 556777 89999999999997 679999999999
Q ss_pred CCCeeEEEeeecCCCCCCc
Q 022377 152 RPINIRFIEFMPFDGNVWN 170 (298)
Q Consensus 152 ~g~~~~~~~~~p~~~~~~~ 170 (298)
+++.+..++|.|.+...+.
T Consensus 283 l~~~VnLIPynp~~~~~~~ 301 (345)
T PRK14457 283 FQSHVNLIPYNPIDEVEFQ 301 (345)
T ss_pred CCCeEEEecCCCCCCCCCC
Confidence 8877777777777665553
No 43
>PRK07094 biotin synthase; Provisional
Probab=99.62 E-value=8.2e-14 Score=124.95 Aligned_cols=171 Identities=19% Similarity=0.205 Sum_probs=141.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcc-ccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR-KDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 90 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~-~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~i 90 (298)
..++.+++.+.++.+.+.|+..|.|+||+ |++. ..+.++++.+++..++. +.+ +.|....+.++.|+++|++.+.+
T Consensus 68 ~~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~-i~~-~~g~~~~e~l~~Lk~aG~~~v~~ 145 (323)
T PRK07094 68 YRLSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVA-ITL-SLGERSYEEYKAWKEAGADRYLL 145 (323)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccCCce-EEE-ecCCCCHHHHHHHHHcCCCEEEe
Confidence 35799999999999999999999999997 5554 45779999998844663 554 44655678999999999999999
Q ss_pred ecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCCCC
Q 022377 91 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNV 168 (298)
Q Consensus 91 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~~~ 168 (298)
++++.+++.++.+++..+++..+++++.++++|+ .+...+++. ||++.+++.+.++++.+++++ +.+..|+|..+++
T Consensus 146 glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi-~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTp 224 (323)
T PRK07094 146 RHETADKELYAKLHPGMSFENRIACLKDLKELGY-EVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTP 224 (323)
T ss_pred ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC-eecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCC
Confidence 9999999999999987889999999999999999 887777665 689999999999999999984 6777888988877
Q ss_pred CcccCCCCHHHHHHHHHH
Q 022377 169 WNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 169 ~~~~~~~~~~e~~~~i~~ 186 (298)
.......+.++.++.++.
T Consensus 225 l~~~~~~~~~~~~~~~a~ 242 (323)
T PRK07094 225 LKDEKGGSLELTLKVLAL 242 (323)
T ss_pred cccCCCCCHHHHHHHHHH
Confidence 665555667776665543
No 44
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=99.60 E-value=6e-14 Score=124.96 Aligned_cols=160 Identities=16% Similarity=0.172 Sum_probs=120.0
Q ss_pred CCCCCHHHHHHHHHHHHhC-CCCEEEEcCCccCcccc--HHHHHHHHhccCCCCcEEEEeC---c--cch-HhhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTS-GVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTN---G--LTL-ARKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~-~~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~~v~i~TN---G--~ll-~~~~~~l~~ 82 (298)
++.++.+++.++++.+.+. ++..|.|||||||++++ +.++++.+.....+..+.+.|. . .++ ++.++.|.+
T Consensus 122 ~~~~~~~~~~~~i~~i~~~~~i~~VvltGGEPL~~~d~~L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~ 201 (321)
T TIGR03821 122 ENQPNKAQWKEALEYIAQHPEINEVILSGGDPLMAKDHRLDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLAN 201 (321)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEEeCcccccCCchHHHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHh
Confidence 4578899999999988864 78999999999999998 7788877766433334455442 1 244 567888888
Q ss_pred cCCCeE-EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC--HhHHHHHHHHHhhCCC-eeEE
Q 022377 83 SGLTSV-NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN--DDEICDFVELTRDRPI-NIRF 158 (298)
Q Consensus 83 ~~~~~v-~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n--~~~i~~i~~~~~~~g~-~~~~ 158 (298)
++...+ .+|+|++ +|.+ +.+.++++.|+++|+ .+.+++|+++|.| .+++.++.+.+.++|+ .+.+
T Consensus 202 ~~~~~~~~~h~dh~-~Ei~---------d~~~~ai~~L~~~Gi-~v~~qtvllkgiNDn~~~l~~L~~~l~~~gv~pyyl 270 (321)
T TIGR03821 202 SRLQTVLVVHINHA-NEID---------AEVADALAKLRNAGI-TLLNQSVLLRGVNDNADTLAALSERLFDAGVLPYYL 270 (321)
T ss_pred cCCcEEEEeeCCCh-HhCc---------HHHHHHHHHHHHcCC-EEEecceeeCCCCCCHHHHHHHHHHHHHcCCeeCcc
Confidence 887766 4699997 4765 347779999999999 9999999999754 5789999999999999 5566
Q ss_pred EeeecCCCCCCcccCCCCHHHHHHHHH
Q 022377 159 IEFMPFDGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 159 ~~~~p~~~~~~~~~~~~~~~e~~~~i~ 185 (298)
..+.|.++... ..++.++..+.+.
T Consensus 271 ~~~~p~gg~~~---f~v~~~~~~~i~~ 294 (321)
T TIGR03821 271 HLLDKVQGAAH---FDVDDERARALMA 294 (321)
T ss_pred cccCCCCCccc---ccCCHHHHHHHHH
Confidence 67778876442 3355544444433
No 45
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=99.59 E-value=1e-13 Score=125.84 Aligned_cols=169 Identities=14% Similarity=0.190 Sum_probs=128.7
Q ss_pred CCCCCHHHHHHHHHHHHhC-CCCEEEEcCCccCcccc--HHHHHHHHhccCCCCcEEEEeC-----ccch-HhhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTS-GVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTN-----GLTL-ARKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~-~~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~~v~i~TN-----G~ll-~~~~~~l~~ 82 (298)
...++.+++.++++.+.+. +++.|.|||||||+.++ +..+++.+++...+..+.+-|+ ++.+ ++.++.|.+
T Consensus 135 ~~~ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~ 214 (417)
T TIGR03820 135 DSIPSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQRITDELVAILKK 214 (417)
T ss_pred cccCCHHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeeccccccccccCHHHHHHHHh
Confidence 4678999999999999884 78999999999999988 5577899988767766889999 7777 567888989
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHh--HHHHHHHHHhhCCCe-eEEE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDD--EICDFVELTRDRPIN-IRFI 159 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~~g~~-~~~~ 159 (298)
.+..+|++|++++ +|. ++.+++++++|+++|+ ++..++|+.+|.|++ -+.++.+-+.+.|+. .-..
T Consensus 215 ~~~~~v~~h~nhp-~Ei---------t~~a~~Al~~L~~aGI-~l~nQsVLLkGVND~~~~l~~L~~~L~~~gV~PYYl~ 283 (417)
T TIGR03820 215 HHPVWLNTHFNHP-REI---------TASSKKALAKLADAGI-PLGNQSVLLAGVNDCPRIMKKLVHKLVANRVRPYYLY 283 (417)
T ss_pred cCCeEEEEeCCCh-HhC---------hHHHHHHHHHHHHcCC-EEEeeceEECCcCCCHHHHHHHHHHHHHCCCeeceee
Confidence 8888999999997 443 5899999999999999 999999999998874 477788877788883 2233
Q ss_pred eeecCCCCCCcccCCCCHHHHHHHHHHhCCCc
Q 022377 160 EFMPFDGNVWNVKKLVPYAEMLDTVVKKFPGL 191 (298)
Q Consensus 160 ~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~~~ 191 (298)
..-++.+..-...+.....++++.+....+++
T Consensus 284 ~~d~v~G~~hFrv~~~~g~~I~~~lr~~~sG~ 315 (417)
T TIGR03820 284 QCDLSEGLSHFRTPVGKGIEIIESLIGHTSGF 315 (417)
T ss_pred eccCCCCcccccCcHHHHHHHHHHHHHhCCCC
Confidence 33445444322222222345566666555443
No 46
>PRK14462 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.58 E-value=1.3e-13 Score=123.39 Aligned_cols=156 Identities=23% Similarity=0.265 Sum_probs=123.0
Q ss_pred CCCCCHHHHHHHHHHHHhC------CCCEEEEc-CCccCccccHH-HHHHHHhccCCCC----cEEEEeCccchHhhHHH
Q 022377 12 PQLLSLNEILRLAYLFVTS------GVDKIRLT-GGEPTVRKDIE-EACFHLSKLKGLK----TLAMTTNGLTLARKLPK 79 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~------~~~~v~~t-GGEPll~~~~~-~ii~~~~~~~~~~----~v~i~TNG~ll~~~~~~ 79 (298)
...|+.+|+..-+..+... ....|+|. |||||+++++. ++++.+++..|+. +++|.|+|.. +.+++
T Consensus 135 ~RnLt~~EIv~QV~~~~~~~~~~~~~~~~vVfmGmGEPL~N~d~v~~~l~~l~~~~Gl~~~~r~itVsTsG~~--~~i~~ 212 (356)
T PRK14462 135 VRNLSAGEIVGQILWIKKDNNIPYEKRVNIVYMGMGEPLDNLDNVSKAIKIFSENDGLAISPRRQTISTSGLA--SKIKK 212 (356)
T ss_pred cccCCHHHHHHHHHHHHHhhhccccccCCeEEeCCcccccCHHHHHHHHHHhcCccCCCcCCCceEEECCCCh--HHHHH
Confidence 3679999987665533331 24588888 89999999965 9999998843663 3699999954 46777
Q ss_pred HHHcCC-CeEEEecCCCCHHhhhhhcCCCc---HHHHHHHHHHHH-HcCCCCEEEEEEEecCCCH--hHHHHHHHHHhhC
Q 022377 80 LKESGL-TSVNISLDTLVPAKFEFLTRRKG---HEKVMESINAAI-EVGYNPVKVNCVVMRGFND--DEICDFVELTRDR 152 (298)
Q Consensus 80 l~~~~~-~~v~iSldg~~~~~~~~ir~~~~---~~~v~~~i~~l~-~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~ 152 (298)
|.+..+ ..+.|||++++++.++++.+... .+.++++++.+. +.+. ++.+++++.+|.|+ +++.+++++++.+
T Consensus 213 L~~~dl~v~LaiSLha~d~e~r~~l~pv~~~~~l~~ll~~l~~y~~~~~~-~i~ieyvLI~GvNDs~e~a~~La~llk~l 291 (356)
T PRK14462 213 LGEMNLGVQLAISLHAVDDELRSELMPINKAYNIESIIDAVRKFPIDQRK-RVMFEYLVIKDVNDDLKSAKKLVKLLNGI 291 (356)
T ss_pred HHhcCCCeEEEEECCCCCHHHHHHhCCCCccCCHHHHHHHHHHHHHHhCC-eEEEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence 777654 45888999999999999998543 689999998555 6677 99999999999987 5699999999998
Q ss_pred CCeeEEEeeecCCCCCCc
Q 022377 153 PINIRFIEFMPFDGNVWN 170 (298)
Q Consensus 153 g~~~~~~~~~p~~~~~~~ 170 (298)
++.+..++|.|++...|.
T Consensus 292 ~~~VnLIPyn~~~~~~~~ 309 (356)
T PRK14462 292 KAKVNLILFNPHEGSKFE 309 (356)
T ss_pred CcEEEEEeCCCCCCCCCC
Confidence 888888888887766664
No 47
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.58 E-value=1.6e-13 Score=113.58 Aligned_cols=151 Identities=26% Similarity=0.376 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc-CCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCC
Q 022377 18 NEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTL 95 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~-~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~ 95 (298)
+++..++......+...+.++||||++++++.++++.+++. .++. +.+.|||..+ .+.++.|.++|+..+.+|+++.
T Consensus 31 ~~~~~~~~~~~~~~~~~i~~~ggep~~~~~~~~~i~~~~~~~~~~~-~~i~T~~~~~~~~~~~~l~~~g~~~i~i~le~~ 109 (204)
T cd01335 31 EEILDIVLEAKERGVEVVILTGGEPLLYPELAELLRRLKKELPGFE-ISIETNGTLLTEELLKELKELGLDGVGVSLDSG 109 (204)
T ss_pred HHHHHHHHHHHhcCceEEEEeCCcCCccHhHHHHHHHHHhhCCCce-EEEEcCcccCCHHHHHHHHhCCCceEEEEcccC
Confidence 46777777777778889999999999999888999999884 3674 9999999886 6789999999999999999999
Q ss_pred CHHhhhhhc-CCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH-hHHHHHHHHHhhCC-C-eeEEEeeecCCCCCCc
Q 022377 96 VPAKFEFLT-RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND-DEICDFVELTRDRP-I-NIRFIEFMPFDGNVWN 170 (298)
Q Consensus 96 ~~~~~~~ir-~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~-~~i~~i~~~~~~~g-~-~~~~~~~~p~~~~~~~ 170 (298)
+++.+..+. +..++++++++++.+.+.++ .+.+.+++..+.+. +++.+.++++.+.+ + .+.+..+.|.+++.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p~~~t~~~ 187 (204)
T cd01335 110 DEEVADKIRGSGESFKERLEALKELREAGL-GLSTTLLVGLGDEDEEDDLEELELLAEFRSPDRVSLFRLLPEEGTPLE 187 (204)
T ss_pred CHHHHHHHhcCCcCHHHHHHHHHHHHHcCC-CceEEEEEecCCChhHHHHHHHHHHHhhcCcchhhhhhhcccCCCeee
Confidence 999888887 66679999999999999999 89999888875443 67888888887766 5 4677788888777543
No 48
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.57 E-value=1.9e-13 Score=122.38 Aligned_cols=153 Identities=18% Similarity=0.314 Sum_probs=113.8
Q ss_pred CCCCHHHHHHHHHHHHh----CCCCEEEEcC-CccCccccHH-HHHHHHhccCCC----CcEEEEeCccchHhhHHHHHH
Q 022377 13 QLLSLNEILRLAYLFVT----SGVDKIRLTG-GEPTVRKDIE-EACFHLSKLKGL----KTLAMTTNGLTLARKLPKLKE 82 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~----~~~~~v~~tG-GEPll~~~~~-~ii~~~~~~~~~----~~v~i~TNG~ll~~~~~~l~~ 82 (298)
..|+.+|+..-+..+.. .++..|+|+| ||||++.+.. ++++.+++..|+ .+++|+|+|.. ..+.++..
T Consensus 125 rnlt~~EIv~Qv~~~~~~~~~~~v~~VvfmGmGEPL~N~d~v~~~l~~l~~~~gl~~~~r~itvsT~G~~--~~i~~l~~ 202 (348)
T PRK14467 125 RNLRTAEIIDQYIQVQKFLGENRIRNVVFMGMGEPLANYENVRKAVQIMTSPWGLDLSKRRITISTSGII--HQIKRMAE 202 (348)
T ss_pred CCCCHHHHHHHHHHHHHHhccCCCCeEEEEccChhhcCHHHHHHHHHHHcChhccCcCCCcEEEECCCCh--hHHHHHHh
Confidence 57999998765544433 2468999999 9999999855 999999763466 14999999955 22333332
Q ss_pred ----cCCCeEEEecCCCCHHhhhhhcCCC---cHHHHHHHHHHHH-HcCCCCEEEEEEEecCCCH--hHHHHHHHHHhhC
Q 022377 83 ----SGLTSVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAI-EVGYNPVKVNCVVMRGFND--DEICDFVELTRDR 152 (298)
Q Consensus 83 ----~~~~~v~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~-~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~ 152 (298)
..++ +.+||++++++.++++++.. .++.+++.++... +.|. ++.+++++.+|.|+ +++.++++++..+
T Consensus 203 ~~~l~~v~-LalSLha~~~e~r~~i~p~~~~~~l~~l~~~~~~~~~~~g~-~V~ieyvLIpGvNDs~e~a~~La~~l~~l 280 (348)
T PRK14467 203 DPVMPEVN-LAVSLNASSQKLRERIMPISKTNTLEELMEVLKQYPLPPGR-RIMLEYVLIKGVNDSPEDALRLAQLIGKN 280 (348)
T ss_pred hccccCee-EEEECCCCCHHHHHHhcCCccccCHHHHHHHHHHHHHhcCC-eEEEEEEEECCccCCHHHHHHHHHHHhcC
Confidence 2354 77999999999999999864 4788888887665 4677 99999999999985 5799999999886
Q ss_pred C--CeeEEEeeecCCCCCC
Q 022377 153 P--INIRFIEFMPFDGNVW 169 (298)
Q Consensus 153 g--~~~~~~~~~p~~~~~~ 169 (298)
+ ..+.+++|.|+....+
T Consensus 281 ~~~~~VnLIPynp~~~~~~ 299 (348)
T PRK14467 281 KKKFKVNLIPFNPDPELPY 299 (348)
T ss_pred CCceEEEEecCCCCCCCCC
Confidence 4 3455566666554444
No 49
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=99.56 E-value=8.5e-14 Score=119.08 Aligned_cols=107 Identities=16% Similarity=0.218 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEecC
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLD 93 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSld 93 (298)
+|+.+++.+.++++...++..|.||||||||++++.++++++++. |+. +.|.|||+++.+. +. .++.+++|++
T Consensus 55 ~~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~~~l~~li~~l~~~-g~~-v~leTNGtl~~~~---l~--~~d~v~vs~K 127 (238)
T TIGR03365 55 PMTAEEVWQELKALGGGTPLHVSLSGGNPALQKPLGELIDLGKAK-GYR-FALETQGSVWQDW---FR--DLDDLTLSPK 127 (238)
T ss_pred cCCHHHHHHHHHHHhCCCCCeEEEeCCchhhhHhHHHHHHHHHHC-CCC-EEEECCCCCcHHH---Hh--hCCEEEEeCC
Confidence 599999999998877667889999999999999999999999985 995 9999999988652 22 3678999999
Q ss_pred CCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 022377 94 TLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR 135 (298)
Q Consensus 94 g~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~ 135 (298)
++++.. ...|+...++++.+.+ +. .+.+.+|+..
T Consensus 128 ~~~sg~------~~~~~~~~~~ik~l~~-~~-~~~vK~Vv~~ 161 (238)
T TIGR03365 128 PPSSGM------ETDWQALDDCIERLDD-GP-QTSLKVVVFD 161 (238)
T ss_pred CCCCCC------CCcHHHHHHHHHHhhh-cC-ceEEEEEECC
Confidence 976421 1348888889998887 66 8999999996
No 50
>PRK05660 HemN family oxidoreductase; Provisional
Probab=99.56 E-value=8.1e-13 Score=120.74 Aligned_cols=158 Identities=14% Similarity=0.185 Sum_probs=127.3
Q ss_pred CCCCCHHH-HHHHHHHHHh-------CCCCEEEEcCCccCcc--ccHHHHHHHHhccC----CCCcEEEEeCccch-Hhh
Q 022377 12 PQLLSLNE-ILRLAYLFVT-------SGVDKIRLTGGEPTVR--KDIEEACFHLSKLK----GLKTLAMTTNGLTL-ARK 76 (298)
Q Consensus 12 ~~~l~~e~-~~~~i~~~~~-------~~~~~v~~tGGEPll~--~~~~~ii~~~~~~~----~~~~v~i~TNG~ll-~~~ 76 (298)
..+.+.++ +.++++++.. .++..|.|.||+|++. .++.++++.+++.. +. .+++.||+..+ .+.
T Consensus 31 ~~~~~~~~Y~~~l~~Ei~~~~~~~~~~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~-eit~e~np~~l~~e~ 109 (378)
T PRK05660 31 KGEVPEDEYVDHLLADLDADLPLVQGREVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDA-EITMEANPGTVEADR 109 (378)
T ss_pred CCcCCHHHHHHHHHHHHHHHhHhccCCceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCc-EEEEEeCcCcCCHHH
Confidence 34556666 6667777764 3577999999999995 45889999998742 34 59999997777 678
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEE-EecCCCHhHHHHHHHHHhhCCC-
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCV-VMRGFNDDEICDFVELTRDRPI- 154 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~v-i~~~~n~~~i~~i~~~~~~~g~- 154 (298)
++.|+++|+++|+|++++.+++..+.+++..+++.++++++.++++|+..+.+... -.|+++.+++.+.++++.++++
T Consensus 110 l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~ 189 (378)
T PRK05660 110 FVGYQRAGVNRISIGVQSFSEEKLKRLGRIHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPP 189 (378)
T ss_pred HHHHHHcCCCEEEeccCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999889999999999999999943455443 3378899999999999999998
Q ss_pred eeEEEeeecCCCCCCc
Q 022377 155 NIRFIEFMPFDGNVWN 170 (298)
Q Consensus 155 ~~~~~~~~p~~~~~~~ 170 (298)
.+.+..+.+..++.+.
T Consensus 190 ~is~y~l~~~~gT~l~ 205 (378)
T PRK05660 190 HLSWYQLTIEPNTLFG 205 (378)
T ss_pred eEEeeccEeccCCccc
Confidence 5677777776555443
No 51
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.54 E-value=7e-13 Score=118.77 Aligned_cols=155 Identities=15% Similarity=0.202 Sum_probs=116.8
Q ss_pred CCCCCHHHHHHHHHHHHh-C--CCCE-EEEcCCccCccccH-HHHHHHHhccCCCC----cEEEEeCccchHhhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVT-S--GVDK-IRLTGGEPTVRKDI-EEACFHLSKLKGLK----TLAMTTNGLTLARKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-~--~~~~-v~~tGGEPll~~~~-~~ii~~~~~~~~~~----~v~i~TNG~ll~~~~~~l~~ 82 (298)
...||.+|+...+..... + .+.. |.++|||||+++++ .++++.+++..|+. +++|.|+|.. + .+.++.+
T Consensus 126 ~rnlt~~EI~~qv~~~~~~~~~~~~gvV~mggGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~-p-~i~~l~~ 203 (342)
T PRK14454 126 VRNLTAGEMLDQILAAQNDIGERISNIVLMGSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIV-P-KIYELAD 203 (342)
T ss_pred cccCCHHHHHHHHHHHHHHhcCCCCCEEEECCchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCCh-h-HHHHHHh
Confidence 456999999877765544 2 2445 55789999999985 59999998733661 3899999953 3 3566766
Q ss_pred cC-CCeEEEecCCCCHHhhhhhcCCCc---HHHHHHHHHH-HHHcCCCCEEEEEEEecCCCH--hHHHHHHHHHhhCCCe
Q 022377 83 SG-LTSVNISLDTLVPAKFEFLTRRKG---HEKVMESINA-AIEVGYNPVKVNCVVMRGFND--DEICDFVELTRDRPIN 155 (298)
Q Consensus 83 ~~-~~~v~iSldg~~~~~~~~ir~~~~---~~~v~~~i~~-l~~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~g~~ 155 (298)
.+ ...+.+||++++++.++++.+... ++.+++.++. +.+.+. ++.+++++.+|.|+ +++++++++++.+.+.
T Consensus 204 ~~~~~~laisLka~d~e~r~~l~pv~~~~~L~~l~~~~~~~~~~~~~-rv~iey~LI~gvNDs~eda~~La~llk~l~~~ 282 (342)
T PRK14454 204 ENLQITLAISLHAPNDELRKKMMPIANKYSIEELIEACKYYINKTNR-RITFEYALVKGVNDSKEDAKELGKLLKGMLCH 282 (342)
T ss_pred hcccceEEEecCCCCHHHHHHhcCCcccCCHHHHHHHHHHHHHHhCC-EEEEEEEeECCCCCCHHHHHHHHHHHhcCCce
Confidence 43 234899999999999999998543 6777776655 456677 89999999999986 5699999999987677
Q ss_pred eEEEeeecCCCCCC
Q 022377 156 IRFIEFMPFDGNVW 169 (298)
Q Consensus 156 ~~~~~~~p~~~~~~ 169 (298)
+.+++|.|.+...+
T Consensus 283 VnLiPyn~~~~~~~ 296 (342)
T PRK14454 283 VNLIPVNEVKENGF 296 (342)
T ss_pred EEEEecCCCCCCCC
Confidence 77777777665544
No 52
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.52 E-value=1.5e-12 Score=115.93 Aligned_cols=149 Identities=18% Similarity=0.232 Sum_probs=114.2
Q ss_pred CCCCHHHHHHHHHHHHh---CCCCEEEEcC-CccCcccc-HHHHHHHHhccC----CCCcEEEEeCccchHhhHHHHHH-
Q 022377 13 QLLSLNEILRLAYLFVT---SGVDKIRLTG-GEPTVRKD-IEEACFHLSKLK----GLKTLAMTTNGLTLARKLPKLKE- 82 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~---~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~----~~~~v~i~TNG~ll~~~~~~l~~- 82 (298)
..++..|+..-+-.+.+ ..+..|.|.| ||||++.+ +.+.++++++.. +-.+++|+|||.. ..+.+|.+
T Consensus 131 rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~~~~~~r~itvST~G~~--~~i~~l~~~ 208 (342)
T PRK14465 131 GNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVV--NGIRRFIEN 208 (342)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHHHHHHHhChhhhcCCCCeEEEeCCCch--HHHHHHHhh
Confidence 45677776654444443 2478999999 99999965 779999887731 1226999999955 44555554
Q ss_pred cCCCeEEEecCCCCHHhhhhhcC---CCcHHHHHHHHHHHH-HcCCCCEEEEEEEecCCCH--hHHHHHHHHHhhCCCee
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTR---RKGHEKVMESINAAI-EVGYNPVKVNCVVMRGFND--DEICDFVELTRDRPINI 156 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~---~~~~~~v~~~i~~l~-~~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~g~~~ 156 (298)
..-..+.||||+++.+.++.+.. ..+++.++++++.+. +.+. ++.+..++.+|.|+ ++++++.+++..+++.+
T Consensus 209 ~~~~~LaiSLhA~~~e~R~~l~Pi~~~~~le~ll~al~~~~~~~~r-~v~ieyvLI~GvNDs~eda~~L~~ll~~l~~kV 287 (342)
T PRK14465 209 KEPYNFAISLNHPDPNGRLQIMDIEEKFPLEELLQAAKDFTRELKR-RITFEYVMIPGVNMGRENANKLVKIARSLDCKI 287 (342)
T ss_pred ccCceEEEEecCCChhhcceEeeccccCCHHHHHHHHHHHHHHcCC-EEEEEEEEECCccCCHHHHHHHHHHHhhCCCcE
Confidence 32346999999999999999864 346899999999776 5576 89999999999987 57999999999998888
Q ss_pred EEEeeecC
Q 022377 157 RFIEFMPF 164 (298)
Q Consensus 157 ~~~~~~p~ 164 (298)
..++|.|.
T Consensus 288 nLIPyN~~ 295 (342)
T PRK14465 288 NVIPLNTE 295 (342)
T ss_pred EEEccCCC
Confidence 88888774
No 53
>PRK15108 biotin synthase; Provisional
Probab=99.52 E-value=2.4e-12 Score=115.92 Aligned_cols=169 Identities=16% Similarity=0.215 Sum_probs=137.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEc-CC-ccCcc--ccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCe
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLT-GG-EPTVR--KDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTS 87 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~t-GG-EPll~--~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~ 87 (298)
...|+.|++.+.+..+.+.|+..+++. || +|... ..+.++++.+++ .++. + +.|||.+..+.+++|+++|++.
T Consensus 73 ~~~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~-~~i~-v-~~s~G~ls~e~l~~LkeAGld~ 149 (345)
T PRK15108 73 ERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKA-MGLE-T-CMTLGTLSESQAQRLANAGLDY 149 (345)
T ss_pred ccCCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHh-CCCE-E-EEeCCcCCHHHHHHHHHcCCCE
Confidence 445999999999999999999999885 44 67544 346699999987 4774 6 4789987788999999999999
Q ss_pred EEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCC--Ce-eEEEeeecC
Q 022377 88 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP--IN-IRFIEFMPF 164 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g--~~-~~~~~~~p~ 164 (298)
++++||+ .++.|..++...+|+..++.++.+++.|+ ++...+++.-|++.+++.+.+..+++++ .+ +.+..+.|.
T Consensus 150 ~n~~leT-~p~~f~~I~~~~~~~~rl~~i~~a~~~G~-~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~ 227 (345)
T PRK15108 150 YNHNLDT-SPEFYGNIITTRTYQERLDTLEKVRDAGI-KVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKV 227 (345)
T ss_pred Eeecccc-ChHhcCCCCCCCCHHHHHHHHHHHHHcCC-ceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCC
Confidence 9999999 79999999887899999999999999999 8888887777889999999999998884 32 333455676
Q ss_pred CCCCCcccCCCCHHHHHHHHH
Q 022377 165 DGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 165 ~~~~~~~~~~~~~~e~~~~i~ 185 (298)
.+++......++..+.++.+.
T Consensus 228 ~gTpl~~~~~~~~~e~lr~iA 248 (345)
T PRK15108 228 KGTPLADNDDVDAFDFIRTIA 248 (345)
T ss_pred CCCCCCCCCCCCHHHHHHHHH
Confidence 666665545567777776654
No 54
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=99.51 E-value=1e-12 Score=117.66 Aligned_cols=157 Identities=17% Similarity=0.151 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHh-CCCCEEEEcCCccCcccc--HHHHHHHHhccCCCC--cEEEEeCcc---ch-HhhHHHHHHcCCCe
Q 022377 17 LNEILRLAYLFVT-SGVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLK--TLAMTTNGL---TL-ARKLPKLKESGLTS 87 (298)
Q Consensus 17 ~e~~~~~i~~~~~-~~~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~--~v~i~TNG~---ll-~~~~~~l~~~~~~~ 87 (298)
.+++.++++.+.. .++..|.|||||||+.++ +.++++.+++...+. +++..|+++ .+ ++.++.|.+.++..
T Consensus 144 ~~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~rit~el~~~L~~~~~~~ 223 (331)
T TIGR00238 144 KKKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQRITDELCELLASFELQL 223 (331)
T ss_pred HHHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchhcCHHHHHHHHhcCCcE
Confidence 7899999999876 468999999999999987 779999988753332 244445554 35 56788888889998
Q ss_pred EEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHh--HHHHHHHHHhhCCC-eeEEEeeecC
Q 022377 88 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDD--EICDFVELTRDRPI-NIRFIEFMPF 164 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~~g~-~~~~~~~~p~ 164 (298)
+.+|.++..++.+ +.+.++++.|+++|+ .+.+++|+++|.|++ .+.++.+.+.+.|+ .+....+.|+
T Consensus 224 ~~vsh~nh~~Ei~---------~~~~~ai~~L~~aGi-~v~~qtvLl~gvnD~~~~l~~L~~~l~~~gV~pyyl~~~~~~ 293 (331)
T TIGR00238 224 MLVTHINHCNEIT---------EEFAEAMKKLRTVNV-TLLNQSVLLRGVNDRAQILAKLSIALFKVGIIPYYLHYLDKV 293 (331)
T ss_pred EEEccCCChHhCC---------HHHHHHHHHHHHcCC-EEEeecceECCcCCCHHHHHHHHHHHhhcCeecCeecCcCCC
Confidence 9999777545543 678899999999999 999999999986653 48889999998898 4556667777
Q ss_pred CCCCCcccCCCCHHHHHHHHHH
Q 022377 165 DGNVWNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 165 ~~~~~~~~~~~~~~e~~~~i~~ 186 (298)
++... ..++.++..+.+.+
T Consensus 294 ~g~~~---f~~~~~~~~~i~~~ 312 (331)
T TIGR00238 294 QGAKH---FLVPDAEAAQIVKE 312 (331)
T ss_pred CCccc---ccCCHHHHHHHHHH
Confidence 76522 33555555544444
No 55
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=99.50 E-value=6.3e-12 Score=111.41 Aligned_cols=170 Identities=19% Similarity=0.233 Sum_probs=132.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEE-c-CCccCccc---cHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCC
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRL-T-GGEPTVRK---DIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLT 86 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~-t-GGEPll~~---~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~ 86 (298)
...++++++.+.++++.+.|+..+.+ + |++|.... .+.++.+.+++ .++. +. .++|.+.++.++.|+++|++
T Consensus 59 ~~~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~-~~i~-~~-~~~g~~~~e~l~~Lk~aG~~ 135 (296)
T TIGR00433 59 ERLKKVDEVLEEARKAKAAGATRFCLVASGRGPKDREFMEYVEAMVQIVEE-MGLK-TC-ATLGLLDPEQAKRLKDAGLD 135 (296)
T ss_pred ccCCCHHHHHHHHHHHHHCCCCEEEEEEecCCCChHHHHHHHHHHHHHHHh-CCCe-EE-ecCCCCCHHHHHHHHHcCCC
Confidence 35688999988888888889888765 3 66666433 23355555555 4774 64 46675557899999999999
Q ss_pred eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCC
Q 022377 87 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFD 165 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~ 165 (298)
.+.++++ .+++.|+.+++..+++..+++++.++++|+ ++...+++..+.+.+++.+.++++.+++++ +.+..+.|..
T Consensus 136 ~v~i~~E-~~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi-~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~ 213 (296)
T TIGR00433 136 YYNHNLD-TSQEFYSNIISTHTYDDRVDTLENAKKAGL-KVCSGGIFGLGETVEDRIGLALALANLPPESVPINFLVKIK 213 (296)
T ss_pred EEEEccc-CCHHHHhhccCCCCHHHHHHHHHHHHHcCC-EEEEeEEEeCCCCHHHHHHHHHHHHhCCCCEEEeeeeEEcC
Confidence 9999999 589999999987889999999999999999 888887775568889999999999999885 6677888988
Q ss_pred CCCCcccCCCCHHHHHHHHHH
Q 022377 166 GNVWNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 166 ~~~~~~~~~~~~~e~~~~i~~ 186 (298)
++........+.++..+.+..
T Consensus 214 gT~l~~~~~~s~~~~~~~ia~ 234 (296)
T TIGR00433 214 GTPLADNKELSADDALKTIAL 234 (296)
T ss_pred CCccCCCCCCCHHHHHHHHHH
Confidence 776655555677777666554
No 56
>PRK06256 biotin synthase; Validated
Probab=99.49 E-value=5.6e-12 Score=113.70 Aligned_cols=169 Identities=16% Similarity=0.216 Sum_probs=136.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEE-cC-CccCcc--ccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRL-TG-GEPTVR--KDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSV 88 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~-tG-GEPll~--~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v 88 (298)
..+++|++.+.++.+.+.|...+.+ +| ++|... .++.++++.+++..++. + ..++|.+..+.++.|+++|++.+
T Consensus 89 ~~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~-~-~~~~g~l~~e~l~~LkeaG~~~v 166 (336)
T PRK06256 89 AWLDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLE-I-CACLGLLTEEQAERLKEAGVDRY 166 (336)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCc-E-EecCCcCCHHHHHHHHHhCCCEE
Confidence 4689999999999999999877776 34 446544 25778888888744443 4 34567655789999999999999
Q ss_pred EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCCC
Q 022377 89 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGN 167 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~~ 167 (298)
.+++++ +++.++++++..+++..+++++.++++|+ .+...+++..|++.+++.+.++++.+++++ +.+..+.|..++
T Consensus 167 ~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi-~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT 244 (336)
T PRK06256 167 NHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGI-EPCSGGIIGMGESLEDRVEHAFFLKELDADSIPINFLNPIPGT 244 (336)
T ss_pred ecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCC-eeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeecccccCCCC
Confidence 999999 89999999988889999999999999999 888887775578999999999999999885 556677888777
Q ss_pred CCcccCCCCHHHHHHHHH
Q 022377 168 VWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 168 ~~~~~~~~~~~e~~~~i~ 185 (298)
+......++..+.++.+.
T Consensus 245 ~l~~~~~~~~~e~l~~ia 262 (336)
T PRK06256 245 PLENHPELTPLECLKTIA 262 (336)
T ss_pred CCCCCCCCCHHHHHHHHH
Confidence 766556677777776654
No 57
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=99.49 E-value=2.4e-12 Score=117.13 Aligned_cols=170 Identities=19% Similarity=0.209 Sum_probs=130.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcccc---HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCe
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD---IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTS 87 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~---~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~ 87 (298)
+...|+.|++.+.++.+.+.|+..|.|+||||....+ +.++++.+++. +..+++.++. +..+.++.|+++|++.
T Consensus 100 ~~~~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~--~p~i~i~~g~-lt~e~l~~Lk~aGv~r 176 (371)
T PRK09240 100 KRKTLDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREY--FSSVSIEVQP-LSEEEYAELVELGLDG 176 (371)
T ss_pred ccccCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHh--CCCceeccCC-CCHHHHHHHHHcCCCE
Confidence 3478999999999999999999999999999887655 44666666652 2235665554 4567899999999999
Q ss_pred EEEecCCCCHHhhhhhcC---CCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC--HhHHHHHHHHHhhCCC-------e
Q 022377 88 VNISLDTLVPAKFEFLTR---RKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN--DDEICDFVELTRDRPI-------N 155 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir~---~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n--~~~i~~i~~~~~~~g~-------~ 155 (298)
+++++++.+++.|..++. ..+|+.++++++.++++|+ . .+++.++.|.+ .++..+++..+..+++ .
T Consensus 177 ~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~-~-~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~s 254 (371)
T PRK09240 177 VTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGI-R-KIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYS 254 (371)
T ss_pred EEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCC-C-eeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCcee
Confidence 999999999999999973 3469999999999999999 5 44554444444 4556666665555443 5
Q ss_pred eEEEeeecCCCCCCcccCCCCHHHHHHHHHH
Q 022377 156 IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~ 186 (298)
++++.++|..+ +|.....++..++++.+.-
T Consensus 255 v~~~~l~P~~g-~~~~~~~~~~~e~l~~ia~ 284 (371)
T PRK09240 255 ISFPRLRPCTG-GIEPASIVSDKQLVQLICA 284 (371)
T ss_pred eecCccccCCC-CCCCCCCCCHHHHHHHHHH
Confidence 77888999976 7877778898888877764
No 58
>PLN02389 biotin synthase
Probab=99.49 E-value=4.1e-12 Score=115.30 Aligned_cols=168 Identities=21% Similarity=0.278 Sum_probs=140.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEE------cCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCC
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRL------TGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLT 86 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~------tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~ 86 (298)
..|+.|++.+.++++.+.|+..+++ ++|||.....+.++++.+++ .++. + ..|+|.+..+.+++|+++|++
T Consensus 114 ~~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~-~~l~-i-~~s~G~l~~E~l~~LkeAGld 190 (379)
T PLN02389 114 KLMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRG-MGME-V-CCTLGMLEKEQAAQLKEAGLT 190 (379)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhc-CCcE-E-EECCCCCCHHHHHHHHHcCCC
Confidence 4699999999999999999998877 35777776778899999987 4774 5 468997778899999999999
Q ss_pred eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCC--C-eeEEEeeec
Q 022377 87 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP--I-NIRFIEFMP 163 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g--~-~~~~~~~~p 163 (298)
.+.+++|+ .++.|+.++...+|+..+++++.+++.|+ ++...+++.-|++.+++.+.+.++.++. . .+.+..+.|
T Consensus 191 ~~~~~LeT-s~~~y~~i~~~~s~e~rl~ti~~a~~~Gi-~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P 268 (379)
T PLN02389 191 AYNHNLDT-SREYYPNVITTRSYDDRLETLEAVREAGI-SVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVA 268 (379)
T ss_pred EEEeeecC-ChHHhCCcCCCCCHHHHHHHHHHHHHcCC-eEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEeccccee
Confidence 99999999 57899999887899999999999999999 8888887777788888889999998874 3 355667788
Q ss_pred CCCCCCcccCCCCHHHHHHHHH
Q 022377 164 FDGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 164 ~~~~~~~~~~~~~~~e~~~~i~ 185 (298)
..++++.....++..+.++.+.
T Consensus 269 ~~GTpL~~~~~~s~~e~lr~iA 290 (379)
T PLN02389 269 VKGTPLEDQKPVEIWEMVRMIA 290 (379)
T ss_pred cCCCcCCCCCCCCHHHHHHHHH
Confidence 8887776556677877776654
No 59
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=99.47 E-value=3.2e-12 Score=116.27 Aligned_cols=138 Identities=14% Similarity=0.272 Sum_probs=115.0
Q ss_pred CCEEEEcCCccCcc--ccHHHHHHHHhcc----CCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhc
Q 022377 32 VDKIRLTGGEPTVR--KDIEEACFHLSKL----KGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLT 104 (298)
Q Consensus 32 ~~~v~~tGGEPll~--~~~~~ii~~~~~~----~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir 104 (298)
+..|.|.||+|++. +++.++++.+++. .+. .+++.||+..+ .+.++.|+++|+..|+|++++.++++.+.+.
T Consensus 52 v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~-eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lg 130 (360)
T TIGR00539 52 LESIFIGGGTPNTLSVEAFERLFESIYQHASLSDDC-EITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLG 130 (360)
T ss_pred ccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCCCCC-EEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhC
Confidence 67999999999874 4577888777643 245 49999999888 5689999999999999999999999999997
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCCCCc
Q 022377 105 RRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNVWN 170 (298)
Q Consensus 105 ~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~~~~ 170 (298)
+..++++++++++.++++|+..+.+..++ .|++|.+++.+.++++.++++ .+.+..+.|..++.+.
T Consensus 131 R~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~~~ 198 (360)
T TIGR00539 131 RQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPINHLSAYALSVEPNTNFE 198 (360)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCCCEEEeecceEcCCChhh
Confidence 66789999999999999999336665544 478999999999999999998 5777788887766543
No 60
>PRK11194 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.44 E-value=8.9e-12 Score=112.43 Aligned_cols=155 Identities=22% Similarity=0.323 Sum_probs=113.8
Q ss_pred CCCCCHHHHHHHHHHHHh----------CCCCEEEEcC-CccCccccHH-HHHHHHhccCC--C--CcEEEEeCccchHh
Q 022377 12 PQLLSLNEILRLAYLFVT----------SGVDKIRLTG-GEPTVRKDIE-EACFHLSKLKG--L--KTLAMTTNGLTLAR 75 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~----------~~~~~v~~tG-GEPll~~~~~-~ii~~~~~~~~--~--~~v~i~TNG~ll~~ 75 (298)
...|+.+|+..-+..+.. .++..|.|.| ||||++.+.. +.++.+.+..| + .+++|.|+|.. .
T Consensus 128 ~rnLt~~EIv~Qv~~~~~~~~~~~~~gg~~~~nvV~mGmGEPL~N~d~v~~al~~l~~~~g~~i~~r~itVsTsG~~--~ 205 (372)
T PRK11194 128 NRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVV--P 205 (372)
T ss_pred CCcCCHHHHHHHHHHHHHHhhhccccCCcccceEEEecCCccccCHHHHHHHHHHHhhhhccCcCCCeEEEECCCCc--h
Confidence 456999998765543332 1256777765 9999999854 88888875333 2 14999999943 3
Q ss_pred hHHHHHHcCCCeEEEecCCCCHHhhhhhcCCC---cHHHHHHHHHHHHH-cC---CCCEEEEEEEecCCCH--hHHHHHH
Q 022377 76 KLPKLKESGLTSVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAIE-VG---YNPVKVNCVVMRGFND--DEICDFV 146 (298)
Q Consensus 76 ~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~-~g---~~~v~i~~vi~~~~n~--~~i~~i~ 146 (298)
.++++.+..--.+.+||++++++.++++.+.. ..+.++++++...+ .+ . ++.+++++.+|.|+ +++.+++
T Consensus 206 ~i~~l~~~~d~~LaiSLha~d~e~R~~lmPin~~~~l~~ll~a~~~y~~~~~~~~r-rI~irypLIpGvNDs~e~a~~La 284 (372)
T PRK11194 206 ALDKLGDMIDVALAISLHAPNDELRDEIVPINKKYNIETFLAAVRRYLEKSNANQG-RVTVEYVMLDHVNDGTEHAHQLA 284 (372)
T ss_pred HHHHHHhccCeEEEeeccCCCHHHHHHhcCCcccccHHHHHHHHHHHHHhcccCCC-eEEEEEEeECCCCCCHHHHHHHH
Confidence 46666664333688899999999999999854 35777777666654 33 4 89999999999997 5699999
Q ss_pred HHHhhCCCeeEEEeeecCCCCCC
Q 022377 147 ELTRDRPINIRFIEFMPFDGNVW 169 (298)
Q Consensus 147 ~~~~~~g~~~~~~~~~p~~~~~~ 169 (298)
++++.+++.+..++|.|+++..+
T Consensus 285 ~ll~~l~~~VnLIPYN~~~~~~~ 307 (372)
T PRK11194 285 ELLKDTPCKINLIPWNPFPGAPY 307 (372)
T ss_pred HHHhcCCceEEEecCCCCCCCCC
Confidence 99998877777777777765555
No 61
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=99.43 E-value=9.9e-12 Score=112.49 Aligned_cols=157 Identities=15% Similarity=0.252 Sum_probs=125.0
Q ss_pred CCCCCHHHHHHHHHHHHhC-------CCCEEEEcCCccCc-ccc-HHHHHHHHhcc--CCCCcEEEEeCccch-HhhHHH
Q 022377 12 PQLLSLNEILRLAYLFVTS-------GVDKIRLTGGEPTV-RKD-IEEACFHLSKL--KGLKTLAMTTNGLTL-ARKLPK 79 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~-------~~~~v~~tGGEPll-~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll-~~~~~~ 79 (298)
...+..+-+.++++++... ++..|.|.||+|++ .++ +.++++.+++. .+. .+++.+|+..+ .+.++.
T Consensus 25 ~~~~~~~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~-eitiE~nP~~~~~e~l~~ 103 (350)
T PRK08446 25 KHDLKKEYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSAKFYEPIFEIISPYLSKDC-EITTEANPNSATKAWLKG 103 (350)
T ss_pred CcccHHHHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHhcCCCc-eEEEEeCCCCCCHHHHHH
Confidence 3455566777788777642 56789999999975 444 55777777652 345 49999999877 678999
Q ss_pred HHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeE
Q 022377 80 LKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIR 157 (298)
Q Consensus 80 l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~ 157 (298)
++++|+++|+|++++.+++..+.+.+..+++.++++++.++++|+..+.+..++. ||++.+++.+.++++.++++ .+.
T Consensus 104 l~~~GvnRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~~is 183 (350)
T PRK08446 104 MKNLGVNRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPINHLS 183 (350)
T ss_pred HHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 9999999999999999999998887777899999999999999994466666554 78999999999999999998 466
Q ss_pred EEeeecCCCCCC
Q 022377 158 FIEFMPFDGNVW 169 (298)
Q Consensus 158 ~~~~~p~~~~~~ 169 (298)
+..+.+..++.+
T Consensus 184 ~y~L~~~~gT~l 195 (350)
T PRK08446 184 AYSLTIEENTPF 195 (350)
T ss_pred eccceecCCChh
Confidence 767777665544
No 62
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=99.41 E-value=1.3e-11 Score=96.61 Aligned_cols=142 Identities=20% Similarity=0.265 Sum_probs=105.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH-HhCCCCEEEEcCCccCcccc-HHHHHHHHhccCCCCcEEEEeCccch--Hh-hHHHH
Q 022377 6 VDLTPKPQLLSLNEILRLAYLF-VTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTL--AR-KLPKL 80 (298)
Q Consensus 6 ~~~~~~~~~l~~e~~~~~i~~~-~~~~~~~v~~tGGEPll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll--~~-~~~~l 80 (298)
...+.....|++++...-+.++ ++.|...|.++||||+|-++ +.++|+.+.+. .+.+.|||+++ +. .++.|
T Consensus 65 ~~~~rag~f~~P~eVaeRL~ei~K~~g~d~vRiSG~EP~l~~EHvlevIeLl~~~----tFvlETNG~~~g~drslv~el 140 (228)
T COG5014 65 LRPKRAGDFLSPEEVAERLLEISKKRGCDLVRISGAEPILGREHVLEVIELLVNN----TFVLETNGLMFGFDRSLVDEL 140 (228)
T ss_pred CCccccccccCHHHHHHHHHHHHHhcCCcEEEeeCCCccccHHHHHHHHHhccCc----eEEEEeCCeEEecCHHHHHHH
Confidence 4455667789998876655444 55788999999999999886 66898887553 47899999988 55 56666
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCc--HHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCC
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKG--HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP 153 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~--~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g 153 (298)
...-...|.||++|.+++.+.+|++... |..-+++++.|.+.|+ .+....+..- ...+-..++..-+.+.+
T Consensus 141 ~nr~nv~vRVsvKG~dpesF~kIT~asp~~F~~QL~aLr~L~~~g~-rf~pA~~~~f-~~Ed~~k~Lak~Lgehp 213 (228)
T COG5014 141 VNRLNVLVRVSVKGWDPESFEKITGASPEYFRYQLKALRHLHGKGH-RFWPAVVYDF-FREDGLKELAKRLGEHP 213 (228)
T ss_pred hcCCceEEEEEecCCCHHHHHHHhcCChHHHHHHHHHHHHHHhcCc-eeeehhhhcc-chhhhHHHHHHHhccCC
Confidence 6644456999999999999999998654 9999999999999998 6555444332 23344445666555544
No 63
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=99.40 E-value=1.5e-11 Score=115.03 Aligned_cols=149 Identities=13% Similarity=0.208 Sum_probs=121.4
Q ss_pred CCCCHHHHHHHHHHHHh--------CCCCEEEEcCCccCcc--ccHHHHHHHHhccC----CCCcEEEEeCccch-HhhH
Q 022377 13 QLLSLNEILRLAYLFVT--------SGVDKIRLTGGEPTVR--KDIEEACFHLSKLK----GLKTLAMTTNGLTL-ARKL 77 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~--------~~~~~v~~tGGEPll~--~~~~~ii~~~~~~~----~~~~v~i~TNG~ll-~~~~ 77 (298)
.....+.+.++++++.. .++..|.|.||+|++. +++.++++.+++.. +. .+++.||+..+ ++.+
T Consensus 76 ~~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~-e~tie~np~~lt~e~l 154 (453)
T PRK09249 76 HEKADPYLDALEKEIALVAALLGPGRPVSQLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDA-EISIEIDPRELDLEML 154 (453)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCcccccCCHHHHHHHHHHHHHhCCCCCCC-EEEEEecCCcCCHHHH
Confidence 34455566777777662 3467999999999984 45889999988743 34 48999999877 5789
Q ss_pred HHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-e
Q 022377 78 PKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI-N 155 (298)
Q Consensus 78 ~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~-~ 155 (298)
+.|+++|+..|+|++++.+++..+.+++..+++.++++++.++++|+..+.+...+ .|++|.+++.+.++++.++++ .
T Consensus 155 ~~l~~aG~~risiGvqS~~~~~L~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~ 234 (453)
T PRK09249 155 DALRELGFNRLSLGVQDFDPEVQKAVNRIQPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVLELRPDR 234 (453)
T ss_pred HHHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999999999999998889999999999999998556666544 478999999999999999988 4
Q ss_pred eEEEeee
Q 022377 156 IRFIEFM 162 (298)
Q Consensus 156 ~~~~~~~ 162 (298)
+.+..+.
T Consensus 235 i~~y~l~ 241 (453)
T PRK09249 235 LAVFNYA 241 (453)
T ss_pred EEEccCc
Confidence 5555554
No 64
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=99.40 E-value=3.1e-11 Score=113.12 Aligned_cols=147 Identities=12% Similarity=0.203 Sum_probs=119.4
Q ss_pred CCCHHHHHHHHHHHHhC--------CCCEEEEcCCccCc--cccHHHHHHHHhcc----CCCCcEEEEeCccch-HhhHH
Q 022377 14 LLSLNEILRLAYLFVTS--------GVDKIRLTGGEPTV--RKDIEEACFHLSKL----KGLKTLAMTTNGLTL-ARKLP 78 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~--------~~~~v~~tGGEPll--~~~~~~ii~~~~~~----~~~~~v~i~TNG~ll-~~~~~ 78 (298)
+...+.+.++++++... ++..|.|.||+|++ ..++.++++.+++. .+. .+++.||+..+ ++.++
T Consensus 77 ~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~~~~~~~~-eitie~np~~l~~e~l~ 155 (455)
T TIGR00538 77 HKADPYLDALEKEIALVAPLFDGNRHVSQLHWGGGTPTYLSPEQISRLMKLIRENFPFNADA-EISIEIDPRYITKDVID 155 (455)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCCceEEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCC-eEEEEeccCcCCHHHHH
Confidence 44444567777776642 56789999999995 34577999999874 234 48999999887 57899
Q ss_pred HHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEE-EecCCCHhHHHHHHHHHhhCCC-ee
Q 022377 79 KLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCV-VMRGFNDDEICDFVELTRDRPI-NI 156 (298)
Q Consensus 79 ~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~v-i~~~~n~~~i~~i~~~~~~~g~-~~ 156 (298)
.|+++|+..|+|++++.+++..+.+++..+++.++++++.++++|+..+.+..+ -.||+|.+++.+.++++.++++ .+
T Consensus 156 ~lk~~G~~risiGvqS~~~~~l~~l~r~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~i 235 (455)
T TIGR00538 156 ALRDEGFNRLSFGVQDFNKEVQQAVNRIQPEEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDRL 235 (455)
T ss_pred HHHHcCCCEEEEcCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999999999998888999999999999999933666543 3478999999999999999988 45
Q ss_pred EEEee
Q 022377 157 RFIEF 161 (298)
Q Consensus 157 ~~~~~ 161 (298)
.+..+
T Consensus 236 s~y~L 240 (455)
T TIGR00538 236 AVFNY 240 (455)
T ss_pred EEecC
Confidence 55555
No 65
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=99.36 E-value=4.1e-11 Score=112.12 Aligned_cols=148 Identities=14% Similarity=0.180 Sum_probs=119.9
Q ss_pred CCCHHHHHHHHHHHHh--------CCCCEEEEcCCccCcc--ccHHHHHHHHhccC----CCCcEEEEeCccch-HhhHH
Q 022377 14 LLSLNEILRLAYLFVT--------SGVDKIRLTGGEPTVR--KDIEEACFHLSKLK----GLKTLAMTTNGLTL-ARKLP 78 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~--------~~~~~v~~tGGEPll~--~~~~~ii~~~~~~~----~~~~v~i~TNG~ll-~~~~~ 78 (298)
....+.+.++++++.. .++..|.|.||+|++. +++.++++.+++.. +. .+++.||+..+ ++.++
T Consensus 78 ~~~~~y~~~L~~Ei~~~~~~~~~~~~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~-e~tie~~p~~lt~e~l~ 156 (453)
T PRK13347 78 APVEAYVAALIREIRLVAASLPQRRRVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEA-EIAVEIDPRTVTAEMLQ 156 (453)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCc-eEEEEeccccCCHHHHH
Confidence 4444556677777662 2467899999999973 45889999998742 34 48999999877 67899
Q ss_pred HHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-ee
Q 022377 79 KLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI-NI 156 (298)
Q Consensus 79 ~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~-~~ 156 (298)
.|+++|+..|+|++++.+++..+.+++..+++.++++++.++++|+..+.+..++ .|+++.+++.+.++++.++++ .+
T Consensus 157 ~L~~~G~~rvsiGvQS~~~~vl~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~i 236 (453)
T PRK13347 157 ALAALGFNRASFGVQDFDPQVQKAINRIQPEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDRI 236 (453)
T ss_pred HHHHcCCCEEEECCCCCCHHHHHHhCCCCCHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCEE
Confidence 9999999999999999999999999998899999999999999999446666543 488999999999999999988 45
Q ss_pred EEEeee
Q 022377 157 RFIEFM 162 (298)
Q Consensus 157 ~~~~~~ 162 (298)
.+..+.
T Consensus 237 ~~y~l~ 242 (453)
T PRK13347 237 AVFGYA 242 (453)
T ss_pred EEeccc
Confidence 555443
No 66
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=99.34 E-value=4.7e-11 Score=108.61 Aligned_cols=171 Identities=20% Similarity=0.183 Sum_probs=124.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccc--c-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCe
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRK--D-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTS 87 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~--~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~ 87 (298)
+...|+.|++.+.++.+.+.|+..|.++|||+.... + +.++++.+++... .+.+..+ .+..+.++.|+++|++.
T Consensus 99 ~~~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p--~i~Iei~-~lt~e~~~~Lk~aGv~r 175 (366)
T TIGR02351 99 KRKKLNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFS--SLAIEVQ-PLNEEEYKKLVEAGLDG 175 (366)
T ss_pred ccCcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCC--ccccccc-cCCHHHHHHHHHcCCCE
Confidence 346799999999999999999999999998855433 3 5688888876321 1333333 24467899999999999
Q ss_pred EEEecCCCCHHhhhhhc---CCCcHHHHHHHHHHHHHcCCCC-EEEEEEEecCCCHhHHHHHHHHHhhC-------CCee
Q 022377 88 VNISLDTLVPAKFEFLT---RRKGHEKVMESINAAIEVGYNP-VKVNCVVMRGFNDDEICDFVELTRDR-------PINI 156 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir---~~~~~~~v~~~i~~l~~~g~~~-v~i~~vi~~~~n~~~i~~i~~~~~~~-------g~~~ 156 (298)
+++++++.+++.|..+. ...+|+..+++++.++++|+ . +.+...+.-+....+..+++..+..+ ++.+
T Consensus 176 ~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~-~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv 254 (366)
T TIGR02351 176 VTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGM-RKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISI 254 (366)
T ss_pred EEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCC-CeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCccc
Confidence 99999999999999987 23469999999999999999 5 66544443322333333333333332 2457
Q ss_pred EEEeeecCCCCCCcccCCCCHHHHHHHHHH
Q 022377 157 RFIEFMPFDGNVWNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 157 ~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~ 186 (298)
.++.++|..+ .|.....++..++++.+..
T Consensus 255 ~~~~l~P~~g-~~~~~~~l~~~~~~~~i~~ 283 (366)
T TIGR02351 255 SVPRLRPCTN-GLKPKVIVTDRELVQIICA 283 (366)
T ss_pred cccccccCCC-CCCCCCcCCHHHHHHHHHH
Confidence 7888999866 7777777888888777654
No 67
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=99.33 E-value=1.1e-10 Score=106.86 Aligned_cols=154 Identities=21% Similarity=0.251 Sum_probs=121.1
Q ss_pred CCCHHHHHHHHHHHHhC----CCCEEEEcCCccCc-cccHH-HHHHHHhcc---CCCCcEEEEeCccch-HhhHHHHHHc
Q 022377 14 LLSLNEILRLAYLFVTS----GVDKIRLTGGEPTV-RKDIE-EACFHLSKL---KGLKTLAMTTNGLTL-ARKLPKLKES 83 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~----~~~~v~~tGGEPll-~~~~~-~ii~~~~~~---~~~~~v~i~TNG~ll-~~~~~~l~~~ 83 (298)
.+..+.+.++++++... ++..|.|.||+|++ .++.. .+++.+++. .++ .+++.||+..+ ++.++.|+++
T Consensus 30 ~~~~~y~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~~~~-eitie~~p~~~t~e~l~~l~~~ 108 (374)
T PRK05799 30 DLMMEYIKALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALEILKETIKKLNKKEDL-EFTVEGNPGTFTEEKLKILKSM 108 (374)
T ss_pred chHHHHHHHHHHHHHhhcCCCceeEEEECCCcccCCCHHHHHHHHHHHHhCCCCCCC-EEEEEeCCCcCCHHHHHHHHHc
Confidence 44455678888887642 35689999999996 55544 666666542 235 48999998777 6789999999
Q ss_pred CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEEEee
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRFIEF 161 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~~~~ 161 (298)
|+..|+|++++.+++..+.+.+..+++.++++++.++++|+..+.+...+. ||++.+++.+.++++.++++ .+....+
T Consensus 109 G~~rvsiGvqS~~d~~L~~l~R~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~is~y~l 188 (374)
T PRK05799 109 GVNRLSIGLQAWQNSLLKYLGRIHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVVELNPEHISCYSL 188 (374)
T ss_pred CCCEEEEECccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecc
Confidence 999999999999999998887777899999999999999984476665444 78999999999999999987 4666677
Q ss_pred ecCCCCC
Q 022377 162 MPFDGNV 168 (298)
Q Consensus 162 ~p~~~~~ 168 (298)
.|..++.
T Consensus 189 ~~~pgT~ 195 (374)
T PRK05799 189 IIEEGTP 195 (374)
T ss_pred EecCCCH
Confidence 7765554
No 68
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=99.32 E-value=6.4e-11 Score=108.45 Aligned_cols=137 Identities=18% Similarity=0.298 Sum_probs=112.4
Q ss_pred CCCEEEEcCCccCc--cccHHHHHHHHhccCCCC---cEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhc
Q 022377 31 GVDKIRLTGGEPTV--RKDIEEACFHLSKLKGLK---TLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLT 104 (298)
Q Consensus 31 ~~~~v~~tGGEPll--~~~~~~ii~~~~~~~~~~---~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir 104 (298)
++..|.|.||+|++ ..++.++++.+++..++. .+++.+|...+ .+.++.|+++|+..|+|++++.+++..+.++
T Consensus 51 ~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~ 130 (377)
T PRK08599 51 KLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIG 130 (377)
T ss_pred ceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC
Confidence 35678899999996 345779999988753331 48899998777 6789999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCC
Q 022377 105 RRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGN 167 (298)
Q Consensus 105 ~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~ 167 (298)
+..+++.+.++++.++++|+..+.+.+++ .||++.+++.+.++++.++++ .+.+..+.|..++
T Consensus 131 r~~~~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~~i~~y~l~~~pgT 195 (377)
T PRK08599 131 RTHNEEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKALALDIPHYSAYSLILEPKT 195 (377)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHHccCCCEEeeeceeecCCC
Confidence 88889999999999999998336666544 478999999999999999988 4556666665443
No 69
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=99.31 E-value=2.7e-10 Score=105.95 Aligned_cols=156 Identities=13% Similarity=0.143 Sum_probs=119.3
Q ss_pred CCHHHHHHHHHHHHhC-------CCCEEEEcCCccCccc-c-HHHHHHHHhccCCC----CcEEEEeCccch-HhhHHHH
Q 022377 15 LSLNEILRLAYLFVTS-------GVDKIRLTGGEPTVRK-D-IEEACFHLSKLKGL----KTLAMTTNGLTL-ARKLPKL 80 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~-------~~~~v~~tGGEPll~~-~-~~~ii~~~~~~~~~----~~v~i~TNG~ll-~~~~~~l 80 (298)
...+-+.++++++... .+..|.|.||+|++.+ + +.++++.+++..++ ..+++.||+..+ ++.++.|
T Consensus 68 ~~~~y~~~L~~Ei~~~~~~~~~~~i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l 147 (430)
T PRK08208 68 FIDSYLDALIRQAEQVAEALAPARFASFAVGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALL 147 (430)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCceeEEEEcCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHH
Confidence 3344456666666532 2568889999999864 3 56777777653222 148899999877 6789999
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEE
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRF 158 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~ 158 (298)
+++|+..|+|++++.+++..+.+.+..+++.++++++.++++|+..+.+.+++. |+++.+++.+.++++.++++ .+.+
T Consensus 148 ~~~G~~rvslGvQS~~~~~L~~l~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~is~ 227 (430)
T PRK08208 148 AARGVNRLSIGVQSFHDSELHALHRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVYRPEELFL 227 (430)
T ss_pred HHcCCCEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEE
Confidence 999999999999999988888887777899999999999999993355665444 88899999999999999988 5666
Q ss_pred EeeecCCCCCCc
Q 022377 159 IEFMPFDGNVWN 170 (298)
Q Consensus 159 ~~~~p~~~~~~~ 170 (298)
..+.+..++...
T Consensus 228 y~L~~~~~T~l~ 239 (430)
T PRK08208 228 YPLYVRPLTGLG 239 (430)
T ss_pred ccccccCCCccc
Confidence 666665555443
No 70
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=99.29 E-value=2.1e-10 Score=103.68 Aligned_cols=171 Identities=22% Similarity=0.311 Sum_probs=127.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCC-ccCccccH-HHHHHHHhccC-CCCcE----------EEEeCccchHhhHHH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGG-EPTVRKDI-EEACFHLSKLK-GLKTL----------AMTTNGLTLARKLPK 79 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGG-EPll~~~~-~~ii~~~~~~~-~~~~v----------~i~TNG~ll~~~~~~ 79 (298)
..++.|++.+.++.+.+.|+..+.|+|| +|.+..+. .++++.+++.. ++. + ...|||.+.++.++.
T Consensus 70 ~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~-~~~~s~~ei~~~~~~~g~~~~e~l~~ 148 (340)
T TIGR03699 70 YVLSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIH-IHSFSPVEIVYIAKKEGLSLREVLER 148 (340)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcC-CCCCCHHHHHHHhccCCCCHHHHHHH
Confidence 3699999999999999999999999987 67777774 48999998742 232 2 133788777889999
Q ss_pred HHHcCCCeEE-EecCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-e
Q 022377 80 LKESGLTSVN-ISLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 80 l~~~~~~~v~-iSldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
|+++|++.+. ...+..++++.+.+.+. .+++..++.++.++++|+ ++...+++..|++.+++.+.+.++++++.. .
T Consensus 149 Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi-~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~ 227 (340)
T TIGR03699 149 LKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGL-PTTATMMFGHVETLEDRIEHLERIRELQDKTG 227 (340)
T ss_pred HHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-CccceeEeeCCCCHHHHHHHHHHHHHhchhhC
Confidence 9999999765 23444566777666543 469999999999999999 888888888789999999999999998763 2
Q ss_pred EEEeeecC----CCCCCcccCCCCHHHHHHHHH
Q 022377 157 RFIEFMPF----DGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 157 ~~~~~~p~----~~~~~~~~~~~~~~e~~~~i~ 185 (298)
.+..|+|. .+++.......+.++.++.++
T Consensus 228 ~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA 260 (340)
T TIGR03699 228 GFTAFIPWTFQPGNTELGKKRPATSTEYLKVLA 260 (340)
T ss_pred CeeEEEeecccCCCCcccCCCCCCHHHHHHHHH
Confidence 34344442 234433334466777766654
No 71
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=99.29 E-value=2.1e-10 Score=103.62 Aligned_cols=171 Identities=22% Similarity=0.277 Sum_probs=129.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCC-ccCccccH-HHHHHHHhcc-CCCCcEEE----------EeCccchHhhHHH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGG-EPTVRKDI-EEACFHLSKL-KGLKTLAM----------TTNGLTLARKLPK 79 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGG-EPll~~~~-~~ii~~~~~~-~~~~~v~i----------~TNG~ll~~~~~~ 79 (298)
..+|.|++.+.++++.+.|+..|.|+|| +|.+..+. .++++.+++. .++. +.. +|+|.+..+.+++
T Consensus 68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~-~~~~t~~ei~~~~~~~g~~~~e~l~~ 146 (343)
T TIGR03551 68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMH-IHAFSPMEVYYGARNSGLSVEEALKR 146 (343)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCce-EEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 4599999999999999999999999988 57777764 6999999885 2453 544 2578777889999
Q ss_pred HHHcCCCeEE-EecCCCCHHhhhhhcCCC-cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-e
Q 022377 80 LKESGLTSVN-ISLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 80 l~~~~~~~v~-iSldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
|+++|++.+. .+.+..+++.+..++..+ +++..+++++.++++|+ ++...+++..+++.+++.+.+.++++++.+ .
T Consensus 147 LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi-~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~~ 225 (343)
T TIGR03551 147 LKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGI-PTTATIMYGHVETPEHWVDHLLILREIQEETG 225 (343)
T ss_pred HHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCC-cccceEEEecCCCHHHHHHHHHHHHHhhHHhC
Confidence 9999999887 355666677777887655 79999999999999999 887777666568889999999999998763 2
Q ss_pred EEEeeecCC----CCCCc----ccCCCCHHHHHHHHH
Q 022377 157 RFIEFMPFD----GNVWN----VKKLVPYAEMLDTVV 185 (298)
Q Consensus 157 ~~~~~~p~~----~~~~~----~~~~~~~~e~~~~i~ 185 (298)
.+..+.|.. +++.. ....++..+.++.++
T Consensus 226 ~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iA 262 (343)
T TIGR03551 226 GFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHA 262 (343)
T ss_pred CeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHH
Confidence 333444422 33332 123467777776654
No 72
>PRK08508 biotin synthase; Provisional
Probab=99.28 E-value=4.3e-10 Score=98.58 Aligned_cols=167 Identities=19% Similarity=0.182 Sum_probs=129.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEc-CCccCcccc---HHHHHHHHhccCCCCcEEE-EeCccchHhhHHHHHHcCCCeE
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLT-GGEPTVRKD---IEEACFHLSKLKGLKTLAM-TTNGLTLARKLPKLKESGLTSV 88 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~t-GGEPll~~~---~~~ii~~~~~~~~~~~v~i-~TNG~ll~~~~~~l~~~~~~~v 88 (298)
.+++|++.+.++++.+.|+..+++. +|+-+-.+. +.++++.+++. ... +.+ .++|.+..+.+++|+++|++.+
T Consensus 39 ~~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~-~p~-l~i~~s~G~~~~e~l~~Lk~aGld~~ 116 (279)
T PRK08508 39 RKDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKE-VPG-LHLIACNGTASVEQLKELKKAGIFSY 116 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhh-CCC-cEEEecCCCCCHHHHHHHHHcCCCEE
Confidence 4899999999999988999999985 555222232 45788888874 332 443 5889887899999999999999
Q ss_pred EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCCC
Q 022377 89 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGN 167 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~~ 167 (298)
.+.+++ .++.|..+....+|+.+++.++.+++.|+ ++...+++.-|++.+++.+.+.++++++.+ +-...+.|..+.
T Consensus 117 ~~~lEt-~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi-~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t 194 (279)
T PRK08508 117 NHNLET-SKEFFPKICTTHTWEERFQTCENAKEAGL-GLCSGGIFGLGESWEDRISFLKSLASLSPHSTPINFFIPNPAL 194 (279)
T ss_pred cccccc-hHHHhcCCCCCCCHHHHHHHHHHHHHcCC-eecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCC
Confidence 999999 47888888877889999999999999999 887777777788889999999999999886 444445566555
Q ss_pred CCcccCCCCHHHHHHHHH
Q 022377 168 VWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 168 ~~~~~~~~~~~e~~~~i~ 185 (298)
+... ...+..+.++.++
T Consensus 195 ~~~~-~~~~~~~~lr~iA 211 (279)
T PRK08508 195 PLKA-PTLSADEALEIVR 211 (279)
T ss_pred CCCC-CCCCHHHHHHHHH
Confidence 5432 3467777766654
No 73
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=99.28 E-value=6.4e-10 Score=100.59 Aligned_cols=138 Identities=13% Similarity=0.226 Sum_probs=114.1
Q ss_pred CCCEEEEcCCccCcc-cc-HHHHHHHHhcc--CCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcC
Q 022377 31 GVDKIRLTGGEPTVR-KD-IEEACFHLSKL--KGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTR 105 (298)
Q Consensus 31 ~~~~v~~tGGEPll~-~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~ 105 (298)
.+..|.|.||-|++- ++ +.++++.+++. ... .+++.+|...+ ++.++.++++|+..|+|++++.+++..+.+++
T Consensus 56 ~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~-eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R 134 (353)
T PRK05904 56 QFKTIYLGGGTPNCLNDQLLDILLSTIKPYVDNNC-EFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNR 134 (353)
T ss_pred CeEEEEECCCccccCCHHHHHHHHHHHHHhcCCCC-eEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCC
Confidence 357899999999885 44 56888888763 233 59999999888 67899999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCCCC
Q 022377 106 RKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNVW 169 (298)
Q Consensus 106 ~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~~~ 169 (298)
..+.+.++++++.++++|+..+.+..++. ||++.+++.+.++++.+++. .+.+..+.+..++..
T Consensus 135 ~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~~gT~l 200 (353)
T PRK05904 135 THTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILKHKINHISFYSLEIKEGSIL 200 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHHhcCCCEEEEEeeEecCCChH
Confidence 88899999999999999983477765444 88999999999999999887 566677777655543
No 74
>PRK06267 hypothetical protein; Provisional
Probab=99.27 E-value=8.2e-10 Score=99.85 Aligned_cols=168 Identities=18% Similarity=0.249 Sum_probs=132.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEec
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISL 92 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSl 92 (298)
..++.|++.+-++.+.+.|++.+.++||+++...++.++++.+++..+.. +.+. -|.+..+.+..+. +..|..++
T Consensus 61 ~~~s~eeI~eea~~~~~~Gv~~~~lsgG~~~~~~el~~i~e~I~~~~~~~-~~~s-~G~~d~~~~~~~~---l~Gv~g~~ 135 (350)
T PRK06267 61 ARRRVESILAEAILMKRIGWKLEFISGGYGYTTEEINDIAEMIAYIQGCK-QYLN-VGIIDFLNINLNE---IEGVVGAV 135 (350)
T ss_pred ccCCHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHHHHHhhCCc-eEee-cccCCHHHHhhcc---ccCceeee
Confidence 46899999999999999998888899999977777889999987754442 4443 3323223333333 33345789
Q ss_pred CCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCCCCCcc
Q 022377 93 DTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGNVWNV 171 (298)
Q Consensus 93 dg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~~~~~~ 171 (298)
++.+++.+..++...+++..++.++.++++|+ .+...+++..|.+.+++.++++++.+++++ +.+..+.|..+++...
T Consensus 136 ET~~~~~~~~i~~~~s~ed~~~~l~~ak~aGi-~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~ 214 (350)
T PRK06267 136 ETVNPKLHREICPGKPLDKIKEMLLKAKDLGL-KTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFEN 214 (350)
T ss_pred ecCCHHHHHhhCCCCCHHHHHHHHHHHHHcCC-eeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCC
Confidence 99989999999988899999999999999999 888888885578999999999999999985 6778889988877666
Q ss_pred cCCCCHHHHHHHHHH
Q 022377 172 KKLVPYAEMLDTVVK 186 (298)
Q Consensus 172 ~~~~~~~e~~~~i~~ 186 (298)
.+..+.++.++.++-
T Consensus 215 ~~~~s~~e~lr~ia~ 229 (350)
T PRK06267 215 KPSVTTLEYMNWVSS 229 (350)
T ss_pred CCCCCHHHHHHHHHH
Confidence 566788888777654
No 75
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.27 E-value=5.7e-10 Score=99.60 Aligned_cols=158 Identities=22% Similarity=0.284 Sum_probs=119.0
Q ss_pred CCCCCHHHHHHHHHHHHh-----------------CCCCEEEEcC-CccCcccc-HHHHHHHHhccCC----CCcEEEEe
Q 022377 12 PQLLSLNEILRLAYLFVT-----------------SGVDKIRLTG-GEPTVRKD-IEEACFHLSKLKG----LKTLAMTT 68 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-----------------~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~----~~~v~i~T 68 (298)
.+.|+..||..-+..+.+ ..+..|.|-| ||||++.+ +.+.++.+.+..+ -.+++|+|
T Consensus 132 ~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~NydnV~~ai~il~d~~g~~is~R~ITVST 211 (371)
T PRK14461 132 LRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFANYDRWWQAVERLHDPQGFNLGARSMTVST 211 (371)
T ss_pred ccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchhhHHHHHHHHHHhcCccccCcCCCceEEEe
Confidence 467898887755443322 1267899987 99999976 7788888866323 22689999
Q ss_pred CccchHhhHHHHHHcCC-CeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH--hHH
Q 022377 69 NGLTLARKLPKLKESGL-TSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVKVNCVVMRGFND--DEI 142 (298)
Q Consensus 69 NG~ll~~~~~~l~~~~~-~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~--~~i 142 (298)
-| +...+++|.+.++ ..+.|||++++.+.-+.+... .+.+.++++++...+..-.++.+..++.+|.|+ ++.
T Consensus 212 ~G--ivp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A 289 (371)
T PRK14461 212 VG--LVKGIRRLANERLPINLAISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQA 289 (371)
T ss_pred ec--chhHHHHHHhcccCceEEEEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHH
Confidence 99 4455677766543 459999999999998888763 358999999988876533389999999999997 569
Q ss_pred HHHHHHHhhC------CCeeEEEeeecCCCCCCcc
Q 022377 143 CDFVELTRDR------PINIRFIEFMPFDGNVWNV 171 (298)
Q Consensus 143 ~~i~~~~~~~------g~~~~~~~~~p~~~~~~~~ 171 (298)
.+++++++.. .+.+..+.|-|..+..+.+
T Consensus 290 ~~L~~llk~~~~~~~l~~~VNLIp~Np~~~~~~~~ 324 (371)
T PRK14461 290 AALARLLRGEAPPGPLLVHVNLIPWNPVPGTPLGR 324 (371)
T ss_pred HHHHHHHcCCccccCCceEEEEecCCCCCCCCCCC
Confidence 9999999987 6677788777766555554
No 76
>PRK14464 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=99.26 E-value=1.9e-10 Score=102.43 Aligned_cols=157 Identities=26% Similarity=0.368 Sum_probs=116.0
Q ss_pred CCCCCHHHHHHHHHHHHhC-CCCEEEEcC-CccCcccc-HHHHHHHHhccC--CCCcEEEEeCccchHhhHHHHHHcCC-
Q 022377 12 PQLLSLNEILRLAYLFVTS-GVDKIRLTG-GEPTVRKD-IEEACFHLSKLK--GLKTLAMTTNGLTLARKLPKLKESGL- 85 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~-~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~--~~~~v~i~TNG~ll~~~~~~l~~~~~- 85 (298)
...++.+|+..-+..+.+. .+..|.|+| ||||++.+ +.+.++.+.+.. +...+.++|-| +.+.+.+|....+
T Consensus 121 ~RnLs~~EI~~Qv~~~~~~~~i~nIVfmGmGEPl~N~d~vl~ai~~l~~~~~i~~r~itiST~G--~~~~i~rL~~~~v~ 198 (344)
T PRK14464 121 LRQLGSAEIVAQVVLARRRRAVKKVVFMGMGEPAHNLDNVLEAIDLLGTEGGIGHKNLVFSTVG--DPRVFERLPQQRVK 198 (344)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEEeccCcccCCHHHHHHHHHHhhchhcCCCceEEEeccc--CchHHHHHHHhcCC
Confidence 3468999988766665553 478999999 99999875 667666664422 33357788888 3334566655333
Q ss_pred CeEEEecCCCCHHhhhhhcCCC---cHHHHHHHHHHHHH-cCCCCEEEEEEEecCCCH--hHHHHHHHHHhhCCCeeEEE
Q 022377 86 TSVNISLDTLVPAKFEFLTRRK---GHEKVMESINAAIE-VGYNPVKVNCVVMRGFND--DEICDFVELTRDRPINIRFI 159 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~-~g~~~v~i~~vi~~~~n~--~~i~~i~~~~~~~g~~~~~~ 159 (298)
..+.+||++++++..+.+.... +.+.++++++.+.+ .|. ++.+.+++.+|.|+ +++.++.+++..+.+.+..+
T Consensus 199 ~~LaiSLhA~~~e~R~~imP~~~~~~l~el~~a~~~~~~~~gr-ri~~EyvLl~GVNDs~e~a~~L~~~l~~~~~~vNLI 277 (344)
T PRK14464 199 PALALSLHTTRAELRARLLPRAPRIAPEELVELGEAYARATGY-PIQYQWTLLEGVNDSDEEMDGIVRLLKGKYAVMNLI 277 (344)
T ss_pred hHHHHHhcCCChhHhheeCCccCCCCHHHHHHHHHHHHHHHCC-EEEEEEEEeCCCCCCHHHHHHHHHHHhcccccccee
Confidence 3467899999999888887643 48889998888765 466 89999999999987 56999999998887888888
Q ss_pred eeecCCCCCCcc
Q 022377 160 EFMPFDGNVWNV 171 (298)
Q Consensus 160 ~~~p~~~~~~~~ 171 (298)
.|-|+.+..+.+
T Consensus 278 PyN~v~g~~~~r 289 (344)
T PRK14464 278 PYNSVDGDAYRR 289 (344)
T ss_pred cCCccCCCCccC
Confidence 777766655544
No 77
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=99.24 E-value=5e-10 Score=98.53 Aligned_cols=173 Identities=19% Similarity=0.230 Sum_probs=141.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhCC-CCEEEEcCCc--cCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCC
Q 022377 10 PKPQLLSLNEILRLAYLFVTSG-VDKIRLTGGE--PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLT 86 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~-~~~v~~tGGE--Pll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~ 86 (298)
.+...|+.|++......+++.| .+.+..++|+ +---+.+.++++.+++..++. + +.|-|.+..+.+++|+++|++
T Consensus 79 ~~~~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~le-~-c~slG~l~~eq~~~L~~aGvd 156 (335)
T COG0502 79 KARKLMEVEEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELGLE-V-CASLGMLTEEQAEKLADAGVD 156 (335)
T ss_pred chhhcCCHHHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcCcH-H-hhccCCCCHHHHHHHHHcChh
Confidence 3456799999999999999999 4556667877 533345778888888545885 5 458887778999999999999
Q ss_pred eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCC-C-eeEEEeeecC
Q 022377 87 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP-I-NIRFIEFMPF 164 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g-~-~~~~~~~~p~ 164 (298)
.++.-||+ +++.|+++....+|+..+++++.++++|+ .+.....+.-|...++..+++..+.++. . .+-+..|.|.
T Consensus 157 ~ynhNLeT-s~~~y~~I~tt~t~edR~~tl~~vk~~Gi-~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~ 234 (335)
T COG0502 157 RYNHNLET-SPEFYENIITTRTYEDRLNTLENVREAGI-EVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPI 234 (335)
T ss_pred heeccccc-CHHHHcccCCCCCHHHHHHHHHHHHHcCC-ccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCC
Confidence 99999999 89999999999999999999999999999 8888877777788888777777777777 5 4667788899
Q ss_pred CCCCCcccCCCCHHHHHHHHHH
Q 022377 165 DGNVWNVKKLVPYAEMLDTVVK 186 (298)
Q Consensus 165 ~~~~~~~~~~~~~~e~~~~i~~ 186 (298)
.+++....+.++..+.++.++-
T Consensus 235 ~GTPle~~~~~~~~e~lk~IA~ 256 (335)
T COG0502 235 PGTPLENAKPLDPFEFLKTIAV 256 (335)
T ss_pred CCCccccCCCCCHHHHHHHHHH
Confidence 8888876677888887777654
No 78
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=99.23 E-value=5.6e-10 Score=102.19 Aligned_cols=137 Identities=16% Similarity=0.308 Sum_probs=113.3
Q ss_pred CCEEEEcCCccCcc--ccHHHHHHHHhccCCCC---cEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcC
Q 022377 32 VDKIRLTGGEPTVR--KDIEEACFHLSKLKGLK---TLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTR 105 (298)
Q Consensus 32 ~~~v~~tGGEPll~--~~~~~ii~~~~~~~~~~---~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~ 105 (298)
+..|.|.||.|++- .++.++++.+++..++. .+++.+|...+ ++.++.|+++|+..|++++++.+++..+.+.+
T Consensus 60 i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R 139 (375)
T PRK05628 60 VSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDR 139 (375)
T ss_pred eeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCC
Confidence 56889999999974 35779998887743321 48888998777 57899999999999999999999999999998
Q ss_pred CCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCCC
Q 022377 106 RKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNV 168 (298)
Q Consensus 106 ~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~~ 168 (298)
..+.+.++++++.++++|+..+.+.+++ .||++.+++.+.++++.+++. .+.+..+.+..++.
T Consensus 140 ~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~l~~~~gT~ 204 (375)
T PRK05628 140 THTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYALIVEDGTA 204 (375)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeeeeecCCCCh
Confidence 8899999999999999999338888766 488999999999999999998 45566666554443
No 79
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=99.23 E-value=1.1e-09 Score=102.84 Aligned_cols=156 Identities=17% Similarity=0.243 Sum_probs=117.8
Q ss_pred CCCHHHHHHHHHHHHhC---------CCCEEEEcCCccCc--cccHHHHHHHHhccC----CCCcEEEEe-Cccch-Hhh
Q 022377 14 LLSLNEILRLAYLFVTS---------GVDKIRLTGGEPTV--RKDIEEACFHLSKLK----GLKTLAMTT-NGLTL-ARK 76 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~---------~~~~v~~tGGEPll--~~~~~~ii~~~~~~~----~~~~v~i~T-NG~ll-~~~ 76 (298)
.+..+.+.++++++... .+..|.|.||+|++ ..++.++++.+.+.. ++..+++.. +.-.+ ++.
T Consensus 192 ~~~~~Y~~aL~~EI~~~~~~~~~~~~~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~ 271 (488)
T PRK08207 192 GLVEPYLEALHYEIEEIGKYLKEKGLKITTIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEK 271 (488)
T ss_pred chHHHHHHHHHHHHHHHHhhhcccCCceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHH
Confidence 34444566666665542 35689999999997 445889999887642 232344543 43344 679
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI- 154 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~- 154 (298)
++.|+++|+..|+|++++.++++.+.+.+..+++.++++++.++++|+..+.+...+ .||++.+++.+.++++.+++.
T Consensus 272 L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd 351 (488)
T PRK08207 272 LEVLKKYGVDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPE 351 (488)
T ss_pred HHHHHhcCCCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcC
Confidence 999999999999999999999999999777889999999999999998445555433 378999999999999999988
Q ss_pred eeEEEeeecCCCCCC
Q 022377 155 NIRFIEFMPFDGNVW 169 (298)
Q Consensus 155 ~~~~~~~~p~~~~~~ 169 (298)
.+.+..+.+..++.+
T Consensus 352 ~isv~~L~i~~gT~l 366 (488)
T PRK08207 352 SLTVHTLAIKRASRL 366 (488)
T ss_pred EEEEEeceEcCCChH
Confidence 566667776655543
No 80
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=99.17 E-value=1.5e-09 Score=99.10 Aligned_cols=136 Identities=15% Similarity=0.247 Sum_probs=115.0
Q ss_pred CCEEEEcCCccCccc--cHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCc
Q 022377 32 VDKIRLTGGEPTVRK--DIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKG 108 (298)
Q Consensus 32 ~~~v~~tGGEPll~~--~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~ 108 (298)
+..|.|.||.|++.+ ++.++++.+++.... .+++.+|...+ .+.++.++++|+.+|+|.+++.+++..+.+.+..+
T Consensus 59 i~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~-eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~ 137 (370)
T PRK06294 59 IDTVFFGGGTPSLVPPALIQDILKTLEAPHAT-EITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHS 137 (370)
T ss_pred eeEEEECCCccccCCHHHHHHHHHHHHhCCCC-eEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCC
Confidence 568999999999976 477999998764355 59999999877 67899999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCCC
Q 022377 109 HEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNV 168 (298)
Q Consensus 109 ~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~~ 168 (298)
.+.++++++.+++.|+..+.+..++. ||++.+++.+.++++.++++ .+.+..+.|..++.
T Consensus 138 ~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~~~is~y~l~~~~gT~ 199 (370)
T PRK06294 138 SSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQAITLPITHISLYNLTIDPHTS 199 (370)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHccCCCeEEEeeeEecCCCh
Confidence 99999999999999994477765554 88899999999999999988 57777777765543
No 81
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=99.14 E-value=5.6e-09 Score=92.56 Aligned_cols=169 Identities=13% Similarity=0.113 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccCcccc--HHHHHHHHhccCCCCcEEEEeCccch-HhhHHHH---HHcCC-CeEE
Q 022377 17 LNEILRLAYLFVTSGVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKL---KESGL-TSVN 89 (298)
Q Consensus 17 ~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l---~~~~~-~~v~ 89 (298)
.+++...++.....+...+.|.||.|+..+. +.++++.+.+...+..+++.|+...+ ++.++.| .++|+ ..|.
T Consensus 63 ~~qi~~~~~~~~~~~~~~iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l~~e~l~~L~~l~~~G~~~~i~ 142 (302)
T TIGR01212 63 KEQIKKQMKKYKKDKKFIAYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCVPDEVLDLLAEYVERGYEVWVE 142 (302)
T ss_pred HHHHHHHHHHhhccCEEEEEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcCCHHHHHHHHHhhhCCceEEEE
Confidence 3456666665554443458889999997664 67999998875444357888887766 4444444 45688 5799
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCC
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGN 167 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~ 167 (298)
+.+++.++++.+.+.+..+++.++++++.++++|+ .+.+.+.+. ||++.+++.+.++++.++++ .+.+..+.|..++
T Consensus 143 lGlQS~~d~~L~~i~Rg~t~~~~~~ai~~l~~~gi-~v~~~lI~GlPget~e~~~~t~~~l~~l~~d~i~i~~l~~~pgT 221 (302)
T TIGR01212 143 LGLQTAHDKTLKKINRGHDFACYVDAVKRARKRGI-KVCSHVILGLPGEDREEMMETAKIVSLLDVDGIKIHPLHVVKGT 221 (302)
T ss_pred EccCcCCHHHHHHHcCcChHHHHHHHHHHHHHcCC-EEEEeEEECCCCCCHHHHHHHHHHHHhcCCCEEEEEEEEecCCC
Confidence 99999999999999888889999999999999999 777766544 78899999999999999988 4677778887665
Q ss_pred CCccc------CCCCHHHHHHHHHH
Q 022377 168 VWNVK------KLVPYAEMLDTVVK 186 (298)
Q Consensus 168 ~~~~~------~~~~~~e~~~~i~~ 186 (298)
..... ..++.+++++.+..
T Consensus 222 ~L~~~~~~g~~~~~~~~e~~~~~~~ 246 (302)
T TIGR01212 222 KMAKMYEKGELKTLSLEEYISLACD 246 (302)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 43221 23455565555544
No 82
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=99.13 E-value=3.7e-09 Score=93.25 Aligned_cols=172 Identities=23% Similarity=0.355 Sum_probs=123.5
Q ss_pred CCCCCCHHHHHHHHHHHHh-CC------CCEEEEcC-CccCcccc-HHHHHHHHhccCCC----CcEEEEeCccchHhhH
Q 022377 11 KPQLLSLNEILRLAYLFVT-SG------VDKIRLTG-GEPTVRKD-IEEACFHLSKLKGL----KTLAMTTNGLTLARKL 77 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~-~~------~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~~----~~v~i~TNG~ll~~~~ 77 (298)
-...|+..||..-+..+.+ ++ +..|.|-| ||||++.+ +...++.+.+..|+ .+++++|+| +...+
T Consensus 125 ~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~~~~~G~~ls~R~iTvSTsG--i~~~I 202 (349)
T COG0820 125 LNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEIINDDEGLGLSKRRITVSTSG--IVPRI 202 (349)
T ss_pred ceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhhcCcccccccceEEEEecCC--CchhH
Confidence 3457999998766555442 22 45788987 99999987 44777777654343 257899999 55567
Q ss_pred HHHHHcCC-CeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCH--hHHHHHHHHHh
Q 022377 78 PKLKESGL-TSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEV-GYNPVKVNCVVMRGFND--DEICDFVELTR 150 (298)
Q Consensus 78 ~~l~~~~~-~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~-g~~~v~i~~vi~~~~n~--~~i~~i~~~~~ 150 (298)
.++.+..+ ..++|||++++.+.-+.+... .+.+..+++++...+. +. +|.+..++.++.|+ ++..++++++.
T Consensus 203 ~~l~~~~~~v~LAiSLHa~nd~lR~~L~Pink~~~~e~l~~a~r~Y~~~t~~-rVt~EY~Ll~~VND~~e~A~~L~~ll~ 281 (349)
T COG0820 203 RKLADEQLGVALAISLHAPNDELRDQLMPINKKYPIEELLEAIRYYPEKSGR-RVTFEYVLLDGVNDSLEHAKELAKLLK 281 (349)
T ss_pred HHHHhhcCCeEEEEecCCCCHHHHhhhhccccCCCHHHHHHHHHhhhhccCc-eEEEEeeecccccCCHHHHHHHHHHhc
Confidence 77764333 359999999998887777643 3489999999998875 54 89999999999997 45788899998
Q ss_pred hCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHH
Q 022377 151 DRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 151 ~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~ 185 (298)
.....+..++|-|..+..+...+........+.+.
T Consensus 282 ~~~~~VNLIP~Np~~~~~y~r~~~~~i~~F~~~L~ 316 (349)
T COG0820 282 GIPCKVNLIPYNPVPGSDYERSSKERIRKFLKILK 316 (349)
T ss_pred CCCceEEEeecCCCCCCCccCCcHHHHHHHHHHHH
Confidence 87778888888887766665433233333333443
No 83
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=99.12 E-value=5e-11 Score=93.57 Aligned_cols=88 Identities=27% Similarity=0.292 Sum_probs=61.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCc---cccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCC
Q 022377 9 TPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTV---RKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL 85 (298)
Q Consensus 9 ~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll---~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~ 85 (298)
......++.+.+.++++.+.+.++..|.|+|||||+ .+.+.++++++++. +...+.+.|||+.+++...++....+
T Consensus 30 ~~~~~~~~~~~~~~ii~~~~~~~~~~i~l~GGEPll~~~~~~l~~i~~~~k~~-~~~~~~~~tng~~~~~~~~~~~~~~~ 108 (139)
T PF13353_consen 30 FKRGKELSEEIIEEIIEELKNYGIKGIVLTGGEPLLHENYDELLEILKYIKEK-FPKKIIILTNGYTLDELLDELIEELL 108 (139)
T ss_dssp TT-SEEC-HHHHHHHCHHHCCCCCCEEEEECSTGGGHHSHHHHHHHHHHHHHT-T-SEEEEEETT--HHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhhHHhcCCceEEEEcCCCeeeeccHhHHHHHHHHHHHh-CCCCeEEEECCCchhHHHhHHHHhcc
Confidence 345667899999999999988899999999999999 56688999999996 44348899999998765443333334
Q ss_pred CeEEEecCCCCH
Q 022377 86 TSVNISLDTLVP 97 (298)
Q Consensus 86 ~~v~iSldg~~~ 97 (298)
+.+.||+|+..+
T Consensus 109 ~~~~vsvd~~~~ 120 (139)
T PF13353_consen 109 DEIDVSVDGPFD 120 (139)
T ss_dssp HTESEEEE---S
T ss_pred CccEEEEEEech
Confidence 445566666443
No 84
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=99.11 E-value=1.2e-08 Score=95.63 Aligned_cols=157 Identities=16% Similarity=0.228 Sum_probs=124.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC------CccCc-cccHHHHHHHHhccCCCCcEEE-EeCccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG------GEPTV-RKDIEEACFHLSKLKGLKTLAM-TTNGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG------GEPll-~~~~~~ii~~~~~~~~~~~v~i-~TNG~ll-~~~~~~l~ 81 (298)
+....+.+++.+-++.+.+.|++.|.|+| |+|+. ++++.++++.+.+..++..+.+ ++|+..+ ++.++.+.
T Consensus 180 ~~rsr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~ 259 (459)
T PRK14338 180 RERSRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVA 259 (459)
T ss_pred CCccCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHh
Confidence 44678999999999999999999999998 78764 4568899999987545533554 4577666 45677777
Q ss_pred Hc--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCe-
Q 022377 82 ES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 82 ~~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
+. ++..+.+++++.++++.+.+++..+.+.+++.++.+++. |+ .+...+ +-.||++.+++.+.++++.+++++
T Consensus 260 ~~~~~~~~v~lglQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~pgi-~i~~d~IvG~PgET~ed~~~ti~~l~~l~~~~ 338 (459)
T PRK14338 260 RLPKCCPHINLPVQAGDDEVLKRMRRGYTVARYRELIARIREAIPDV-SLTTDIIVGHPGETEEQFQRTYDLLEEIRFDK 338 (459)
T ss_pred cccccccceecCcccCCHHHHHhccCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEECCCCCHHHHHHHHHHHHHcCCCE
Confidence 74 478899999999999999999888899999999999998 44 343333 345889999999999999999884
Q ss_pred eEEEeeecCCCCC
Q 022377 156 IRFIEFMPFDGNV 168 (298)
Q Consensus 156 ~~~~~~~p~~~~~ 168 (298)
+.+..|.|..++.
T Consensus 339 v~i~~ysp~pGT~ 351 (459)
T PRK14338 339 VHIAAYSPRPGTL 351 (459)
T ss_pred eEEEecCCCCCCh
Confidence 5677788876654
No 85
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=99.11 E-value=1.5e-08 Score=88.31 Aligned_cols=173 Identities=21% Similarity=0.221 Sum_probs=130.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccC----ccccHHHHHHHHhccC-CCCcE-EEEeCccchHh
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT----VRKDIEEACFHLSKLK-GLKTL-AMTTNGLTLAR 75 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl----l~~~~~~ii~~~~~~~-~~~~v-~i~TNG~ll~~ 75 (298)
+|+|.|.. ...++.++..++++.+.+.|+..|.+++|+|. +..+..++++++++.. +.. + .+.+|+ .+
T Consensus 5 lRDG~q~~--~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~-~~~l~~~~---~~ 78 (265)
T cd03174 5 LRDGLQSE--GATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVK-LQALVRNR---EK 78 (265)
T ss_pred CCCcccCC--CCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcE-EEEEccCc---hh
Confidence 46766665 56779999999999999999999999999998 7788899999998853 354 5 677777 66
Q ss_pred hHHHHHHcCCCeEEEecCCCCHHhhhhhc---CC-CcHHHHHHHHHHHHHcCCCCEEEEEEEecC--CCHhHHHHHHHHH
Q 022377 76 KLPKLKESGLTSVNISLDTLVPAKFEFLT---RR-KGHEKVMESINAAIEVGYNPVKVNCVVMRG--FNDDEICDFVELT 149 (298)
Q Consensus 76 ~~~~l~~~~~~~v~iSldg~~~~~~~~ir---~~-~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~--~n~~~i~~i~~~~ 149 (298)
.++.+.+++++.|.+++++. + .|+... +. ..++.+++.++.+++.|+ .+.+++...-+ .|.+++.++++.+
T Consensus 79 ~i~~a~~~g~~~i~i~~~~s-~-~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~l~~~~~~~ 155 (265)
T cd03174 79 GIERALEAGVDEVRIFDSAS-E-THSRKNLNKSREEDLENAEEAIEAAKEAGL-EVEGSLEDAFGCKTDPEYVLEVAKAL 155 (265)
T ss_pred hHHHHHhCCcCEEEEEEecC-H-HHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEEeecCCCCCHHHHHHHHHHH
Confidence 79999999999999999885 3 555552 21 249999999999999999 89888843334 7999999999999
Q ss_pred hhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 150 RDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 150 ~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
.+.|++ .+.+.+..+. . .+....+++..+.+.++
T Consensus 156 ~~~g~~--~i~l~Dt~G~-~---~P~~v~~li~~l~~~~~ 189 (265)
T cd03174 156 EEAGAD--EISLKDTVGL-A---TPEEVAELVKALREALP 189 (265)
T ss_pred HHcCCC--EEEechhcCC-c---CHHHHHHHHHHHHHhCC
Confidence 999975 3334443222 1 11234455556665553
No 86
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=99.10 E-value=1.3e-08 Score=90.60 Aligned_cols=171 Identities=22% Similarity=0.285 Sum_probs=125.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcccc-HHHHHHHHhccC-CCCcEEEE----------eCccchHhhHHH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVRKD-IEEACFHLSKLK-GLKTLAMT----------TNGLTLARKLPK 79 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~~~-~~~ii~~~~~~~-~~~~v~i~----------TNG~ll~~~~~~ 79 (298)
..++.|++.+.++++.+.|+..|.|+||+ |.+..+ +.++++.+++.. ++. +... ++|....+.++.
T Consensus 34 ~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~-~~~~s~~e~~~~~~~~g~~~~e~l~~ 112 (309)
T TIGR00423 34 YVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVH-IHAFSPMEVYFLAKNEGLSIEEVLKR 112 (309)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCce-EEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 46999999999999999999999999885 666666 569999998852 342 3322 456556788999
Q ss_pred HHHcCCCeEE-EecCCCCHHhhhhhcCCC-cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-e
Q 022377 80 LKESGLTSVN-ISLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 80 l~~~~~~~v~-iSldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
|+++|++.+. ++.+..+++..+.+...+ +.++.++.++.+++.|+ ++...+++.-+++.++..+.+.++++++.+ .
T Consensus 113 LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi-~~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~ 191 (309)
T TIGR00423 113 LKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGI-PTTATMMFGHVENPEHRVEHLLRIRKIQEKTG 191 (309)
T ss_pred HHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-CceeeEEecCCCCHHHHHHHHHHHHhhchhhC
Confidence 9999999885 688888888887886544 68999999999999999 887777666557888998999999987763 2
Q ss_pred EEEeeecC----CCCC-Cccc--CCCCHHHHHHHHH
Q 022377 157 RFIEFMPF----DGNV-WNVK--KLVPYAEMLDTVV 185 (298)
Q Consensus 157 ~~~~~~p~----~~~~-~~~~--~~~~~~e~~~~i~ 185 (298)
.+..|.|. .+++ .... ...+..+.++.++
T Consensus 192 ~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA 227 (309)
T TIGR00423 192 GFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIA 227 (309)
T ss_pred CeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHH
Confidence 33333442 1222 2211 3466677666554
No 87
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=99.05 E-value=1.4e-08 Score=93.50 Aligned_cols=149 Identities=10% Similarity=0.180 Sum_probs=118.2
Q ss_pred HHHHHHHHHh-----CCCCEEEEcCCccCccc--cHHHHHHHHhccCCCC---cEEEEeCccch-HhhHHHHHHcCCCeE
Q 022377 20 ILRLAYLFVT-----SGVDKIRLTGGEPTVRK--DIEEACFHLSKLKGLK---TLAMTTNGLTL-ARKLPKLKESGLTSV 88 (298)
Q Consensus 20 ~~~~i~~~~~-----~~~~~v~~tGGEPll~~--~~~~ii~~~~~~~~~~---~v~i~TNG~ll-~~~~~~l~~~~~~~v 88 (298)
+..+++++.. .++..|.|.||.|++-+ .+.++++.+++..++. .+++.+|...+ .+.++.|+++|+.+|
T Consensus 50 ~~~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~Gvnri 129 (400)
T PRK07379 50 VEVLCQEIAITPSFGQPLQTVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRV 129 (400)
T ss_pred HHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEE
Confidence 3345555543 23678999999999753 3679999887743332 58899997666 678999999999999
Q ss_pred EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCC
Q 022377 89 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDG 166 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~ 166 (298)
+|.+++.+++..+.+.+..+.+.+.++++.++++|+..+.+..++. ||++.+++.+.++++.+++. .+.+..+.+..+
T Consensus 130 slGvQS~~d~~L~~l~R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~is~y~L~~~pg 209 (400)
T PRK07379 130 SLGVQAFQDELLALCGRSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPTHLSCYDLVLEPG 209 (400)
T ss_pred EEEcccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCCEEEEecceecCC
Confidence 9999999999999998888999999999999999993377766544 88899999999999999887 566667776655
Q ss_pred CC
Q 022377 167 NV 168 (298)
Q Consensus 167 ~~ 168 (298)
+.
T Consensus 210 T~ 211 (400)
T PRK07379 210 TA 211 (400)
T ss_pred ch
Confidence 43
No 88
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=99.03 E-value=1.6e-08 Score=92.82 Aligned_cols=136 Identities=18% Similarity=0.251 Sum_probs=108.8
Q ss_pred CCCEEEEcCCccCc-ccc-HHHHHHHHhccCCC---CcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhc
Q 022377 31 GVDKIRLTGGEPTV-RKD-IEEACFHLSKLKGL---KTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLT 104 (298)
Q Consensus 31 ~~~~v~~tGGEPll-~~~-~~~ii~~~~~~~~~---~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir 104 (298)
.+..|.|.||.|++ .++ +.++++.+++...+ ..+++.+|...+ .+.++.|+++|+.+|+|.+++.+++..+.+.
T Consensus 62 ~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~lg 141 (390)
T PRK06582 62 YIKSIFFGGGTPSLMNPVIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKLG 141 (390)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHcC
Confidence 36789999999965 555 55788888774222 259999999877 6799999999999999999999999998988
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCC
Q 022377 105 RRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGN 167 (298)
Q Consensus 105 ~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~ 167 (298)
+..+.+.++++++.+++.+. .+.+..++ .||++.+++.+-++.+.+++. ++++..+.+..++
T Consensus 142 R~h~~~~~~~ai~~~~~~~~-~v~~DlI~GlPgqt~e~~~~~l~~~~~l~p~his~y~L~i~~gT 205 (390)
T PRK06582 142 RTHDCMQAIKTIEAANTIFP-RVSFDLIYARSGQTLKDWQEELKQAMQLATSHISLYQLTIEKGT 205 (390)
T ss_pred CCCCHHHHHHHHHHHHHhCC-cEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEEecCEEccCC
Confidence 88889999999999998855 67766543 477888889888888888887 5666666655444
No 89
>PRK06245 cofG FO synthase subunit 1; Reviewed
Probab=99.03 E-value=1.5e-08 Score=91.48 Aligned_cols=168 Identities=23% Similarity=0.251 Sum_probs=116.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCcc-Ccc-------------ccHHHHHHHHhcc---CCCCcEEEEeCccch-H
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEP-TVR-------------KDIEEACFHLSKL---KGLKTLAMTTNGLTL-A 74 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEP-ll~-------------~~~~~ii~~~~~~---~~~~~v~i~TNG~ll-~ 74 (298)
..+|.|++.+.++++.+.|+..|.|+|||+ .+. +++.++++.+.+. .++. ..+|...+ +
T Consensus 39 ~~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~~---~~~~~~~lt~ 115 (336)
T PRK06245 39 SLLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEEGLL---PHTNAGILTR 115 (336)
T ss_pred CcCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCC---ccccCCCCCH
Confidence 489999999999999999999999999997 444 2233444332221 2332 34665555 6
Q ss_pred hhHHHHHHcCCCeEEEecCCCCHHhhhhhc---CCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 75 RKLPKLKESGLTSVNISLDTLVPAKFEFLT---RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 75 ~~~~~l~~~~~~~v~iSldg~~~~~~~~ir---~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
+.++.|++++.. +.+++++.++..++.+. ....++..++.++.+++.|+ ++...+.+.-+++.+++.+.+.++.+
T Consensus 116 e~i~~Lk~ag~~-l~~~~et~~e~l~~~v~~~~~~~~~~~~l~~i~~a~~~Gi-~~~~~~i~G~gEt~ed~~~~l~~l~~ 193 (336)
T PRK06245 116 EEMEKLKEVNAS-MGLMLEQTSPRLLNTVHRGSPGKDPELRLETIENAGKLKI-PFTTGILIGIGETWEDRAESLEAIAE 193 (336)
T ss_pred HHHHHHHHhCCC-CCCCccccchhhHHhhccCCCCCCHHHHHHHHHHHHHcCC-ceeeeeeeECCCCHHHHHHHHHHHHH
Confidence 789999998765 68888998888876552 23458899999999999999 77655555556788887776666665
Q ss_pred CC-----C-eeEEEeeecCCCCCCcccCCCCHHHHHHHHH
Q 022377 152 RP-----I-NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 152 ~g-----~-~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~ 185 (298)
+. + .+....|.|..++........+.++.++.++
T Consensus 194 l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia 233 (336)
T PRK06245 194 LHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVA 233 (336)
T ss_pred HHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHH
Confidence 43 3 3556677777666553334456666666544
No 90
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=99.02 E-value=2.3e-10 Score=87.40 Aligned_cols=83 Identities=25% Similarity=0.397 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCC--CEEEEcCCccCcc---ccHHHHHHHHhccCC--CCcEEEEeCccchHh-hHHHHH
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGV--DKIRLTGGEPTVR---KDIEEACFHLSKLKG--LKTLAMTTNGLTLAR-KLPKLK 81 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~--~~v~~tGGEPll~---~~~~~ii~~~~~~~~--~~~v~i~TNG~ll~~-~~~~l~ 81 (298)
.....++.+++.++++.+...+. ..|.|+||||||+ +++.++++++++. + + .+.+.|||++..+ ......
T Consensus 24 ~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GGEPll~~~~~~l~~~i~~~~~~-~~~~-~i~i~TNg~~~~~~~~~~~~ 101 (119)
T PF13394_consen 24 KKGEEMSIEELEEIIDELKEKGFRPSTVVFTGGEPLLYLNPEDLIELIEYLKER-GPEI-KIRIETNGTLPTEEKIEDWK 101 (119)
T ss_dssp -GGGS--HHHHHHHHHHHHHTT----EEEEESSSGGGSTTHHHHHHHHCTSTT-------EEEEEE-STTHHHHHH----
T ss_pred ccCCcccHhHHHHHHHHHHhcCCceEEEEEECCCCccccCHHHHHHHHHHHHhh-CCCc-eEEEEeCCeeccccchhhcc
Confidence 34577899999999998888765 5799999999976 3477888888885 5 7 4999999998833 321111
Q ss_pred H--cCC--CeEEEecCC
Q 022377 82 E--SGL--TSVNISLDT 94 (298)
Q Consensus 82 ~--~~~--~~v~iSldg 94 (298)
+ .-+ ..+.||+||
T Consensus 102 ~~~~~ls~k~~~~s~~g 118 (119)
T PF13394_consen 102 NLEECLSIKYIDVSVDG 118 (119)
T ss_dssp -----------------
T ss_pred ccccccccccccccccC
Confidence 1 112 256688887
No 91
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.99 E-value=8.6e-08 Score=89.51 Aligned_cols=157 Identities=16% Similarity=0.173 Sum_probs=122.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC-------CccCccccHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG-------GEPTVRKDIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG-------GEPll~~~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l~ 81 (298)
+....+.+++.+-++.+.+.|++.|.|+| |++...+++.++++.+.+. ++..+.+.+ |...+ ++.++.|+
T Consensus 163 ~~~sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~-~i~~ir~~~~~p~~i~~ell~~l~ 241 (440)
T PRK14334 163 PEVSRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGAS-GIPRVKFTTSHPMNFTDDVIAAMA 241 (440)
T ss_pred CCccCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhc-CCcEEEEccCCcccCCHHHHHHHH
Confidence 33467899999888888888988888864 5554456788888888764 653466654 66666 56788888
Q ss_pred Hc--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE---EEecCCCHhHHHHHHHHHhhCCCe-
Q 022377 82 ES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC---VVMRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 82 ~~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~---vi~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
+. ++..+.|++++.++++.+.+++..+.+.+++.++.+++++. .+.+++ +-.||++.+++++.++++.+++.+
T Consensus 242 ~~~~g~~~l~igvQSgs~~vLk~m~R~~~~~~~~~~v~~lr~~~~-~i~i~~d~IvG~PgEt~ed~~~tl~~i~~l~~~~ 320 (440)
T PRK14334 242 ETPAVCEYIHLPVQSGSDRVLRRMAREYRREKYLERIAEIREALP-DVVLSTDIIVGFPGETEEDFQETLSLYDEVGYDS 320 (440)
T ss_pred hcCcCCCeEEeccccCCHHHHHHhCCCCCHHHHHHHHHHHHHhCC-CcEEEEeEEEECCCCCHHHHHHHHHHHHhcCCCE
Confidence 74 48999999999999999998888889999999999999987 554443 334889999999999999999884
Q ss_pred eEEEeeecCCCCCC
Q 022377 156 IRFIEFMPFDGNVW 169 (298)
Q Consensus 156 ~~~~~~~p~~~~~~ 169 (298)
+.+..|.|..++..
T Consensus 321 i~~f~ysp~pGT~~ 334 (440)
T PRK14334 321 AYMFIYSPRPGTPS 334 (440)
T ss_pred eeeeEeeCCCCChh
Confidence 56667888776654
No 92
>PLN02428 lipoic acid synthase
Probab=98.99 E-value=8.9e-08 Score=85.53 Aligned_cols=166 Identities=18% Similarity=0.207 Sum_probs=126.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccc-----cHHHHHHHHhcc-CCCCcEEEEeCccch-HhhHHHHHHcC
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRK-----DIEEACFHLSKL-KGLKTLAMTTNGLTL-ARKLPKLKESG 84 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~-----~~~~ii~~~~~~-~~~~~v~i~TNG~ll-~~~~~~l~~~~ 84 (298)
....+.+++.++++.+.+.|+..|.|++|.=..++ .+.++++.+++. .++ .+.+.|-+.+. .+.++.|+++|
T Consensus 127 p~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl~D~ga~~~~elir~Ir~~~P~i-~Ie~L~pdf~~d~elL~~L~eAG 205 (349)
T PLN02428 127 PPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDLPDGGSGHFAETVRRLKQLKPEI-LVEALVPDFRGDLGAVETVATSG 205 (349)
T ss_pred CCCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCCCcccHHHHHHHHHHHHHhCCCc-EEEEeCccccCCHHHHHHHHHcC
Confidence 45677888889999999999999999988522223 477899998874 345 36665555443 56899999999
Q ss_pred CCeEEEecCCCCHHhhhhhc-CCCcHHHHHHHHHHHHHc--CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEE-e
Q 022377 85 LTSVNISLDTLVPAKFEFLT-RRKGHEKVMESINAAIEV--GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFI-E 160 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir-~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~-~ 160 (298)
++.++..+++ .+..++.++ ...++++.++.++.+++. |+ .+...+++.-|++.+++.++++++.++|+++..+ +
T Consensus 206 ~d~i~hnlET-v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi-~tkSg~MvGLGET~Edv~e~l~~Lrelgvd~vtigq 283 (349)
T PLN02428 206 LDVFAHNIET-VERLQRIVRDPRAGYKQSLDVLKHAKESKPGL-LTKTSIMLGLGETDEEVVQTMEDLRAAGVDVVTFGQ 283 (349)
T ss_pred CCEEccCccC-cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-eEEEeEEEecCCCHHHHHHHHHHHHHcCCCEEeecc
Confidence 9999999998 578899998 556899999999999998 88 7766666666899999999999999999975444 5
Q ss_pred eecCCCCCCcccCCCCHHHH
Q 022377 161 FMPFDGNVWNVKKLVPYAEM 180 (298)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~e~ 180 (298)
|+......+.-..+.+.+++
T Consensus 284 yL~Ps~~h~~v~~~v~p~~f 303 (349)
T PLN02428 284 YLRPTKRHLPVKEYVTPEKF 303 (349)
T ss_pred ccCCCcceeeeecccCHHHH
Confidence 54333333443455566554
No 93
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=98.98 E-value=4.9e-08 Score=88.51 Aligned_cols=170 Identities=21% Similarity=0.185 Sum_probs=124.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccC-ccc-cHHHHHHHHhcc-CCCCcEEEE----------eCccchHhhHHHH
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPT-VRK-DIEEACFHLSKL-KGLKTLAMT----------TNGLTLARKLPKL 80 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl-l~~-~~~~ii~~~~~~-~~~~~v~i~----------TNG~ll~~~~~~l 80 (298)
.|+.|++.+.+.++.+.|+..|.++||+.. +.. .+.++++.+++. .++. +... +.|....+.+++|
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~-i~~~~~~ei~~~~~~~g~~~~e~l~~L 156 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLH-VKAFTAVEIHHFSKISGLPTEEVLDEL 156 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCce-EEeCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 489999999999999999999999999854 332 366999999875 2343 4332 2454556789999
Q ss_pred HHcCCCeEE-EecCCCCHHhhhhhcCCC-cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eE
Q 022377 81 KESGLTSVN-ISLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IR 157 (298)
Q Consensus 81 ~~~~~~~v~-iSldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~ 157 (298)
+++|++.+. ..+...+++.+..+...+ ++++.++.++.++++|+ ++...+++..|++.++..+.+..+++++.. .-
T Consensus 157 keAGld~~~~~g~E~~~~~v~~~i~~~~~~~~~~l~~i~~a~~~Gi-~~~sg~i~GlgEt~edrv~~l~~Lr~l~~~~~~ 235 (351)
T TIGR03700 157 KEAGLDSMPGGGAEIFAEEVRQQICPEKISAERWLEIHRTAHELGL-KTNATMLYGHIETPAHRVDHMLRLRELQDETGG 235 (351)
T ss_pred HHcCCCcCCCCcccccCHHHHhhcCCCCCCHHHHHHHHHHHHHcCC-CcceEEEeeCCCCHHHHHHHHHHHHHhhHhhCC
Confidence 999999886 577777778888887654 58999999999999999 888887777788888888888888887763 23
Q ss_pred EEeeecC----CCCCCccc--CCCCHHHHHHHHH
Q 022377 158 FIEFMPF----DGNVWNVK--KLVPYAEMLDTVV 185 (298)
Q Consensus 158 ~~~~~p~----~~~~~~~~--~~~~~~e~~~~i~ 185 (298)
+..|+|. .+++.... ...+..+.++.++
T Consensus 236 f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA 269 (351)
T TIGR03700 236 FQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLA 269 (351)
T ss_pred ceEEEeecccCCCCcccCCCCCCCCHHHHHHHHH
Confidence 3445554 23333322 3466677666554
No 94
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=98.98 E-value=3.3e-08 Score=90.59 Aligned_cols=136 Identities=15% Similarity=0.238 Sum_probs=111.7
Q ss_pred CCCEEEEcCCccCccc--cHHHHHHHHhccCCCC---cEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhc
Q 022377 31 GVDKIRLTGGEPTVRK--DIEEACFHLSKLKGLK---TLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLT 104 (298)
Q Consensus 31 ~~~~v~~tGGEPll~~--~~~~ii~~~~~~~~~~---~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir 104 (298)
.+..|.|.||.|++-+ .+.++++.+++...+. .+++.+|...+ .+.++.|+++|+.+|++.+.+.++++.+.+.
T Consensus 55 ~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~ 134 (380)
T PRK09057 55 TLTSIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLG 134 (380)
T ss_pred CcCeEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcC
Confidence 4679999999999875 3779999888743321 48999998777 5799999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCC
Q 022377 105 RRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGN 167 (298)
Q Consensus 105 ~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~ 167 (298)
+..+.+.+.++++.+++++. .+.+..++. ||++.+++.+-++.+.+++. .+.+..+.+..++
T Consensus 135 R~~~~~~~~~ai~~~~~~~~-~v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~~~~gT 198 (380)
T PRK09057 135 RLHSVAEALAAIDLAREIFP-RVSFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLTIEEGT 198 (380)
T ss_pred CCCCHHHHHHHHHHHHHhCc-cEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecceecCCC
Confidence 88889999999999999876 777776555 88888888888888888887 4666666665443
No 95
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=98.96 E-value=9.3e-08 Score=88.02 Aligned_cols=137 Identities=17% Similarity=0.223 Sum_probs=112.0
Q ss_pred CCEEEEcCCccCccc--cHHHHHHHHhccCCC---CcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcC
Q 022377 32 VDKIRLTGGEPTVRK--DIEEACFHLSKLKGL---KTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTR 105 (298)
Q Consensus 32 ~~~v~~tGGEPll~~--~~~~ii~~~~~~~~~---~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~ 105 (298)
+..|.|.||.|++-+ ++.++++.+++...+ ..+++.+|...+ .+.++.|+++|++.|+|.+++.+++..+.+.+
T Consensus 74 i~siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R 153 (394)
T PRK08898 74 VHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGR 153 (394)
T ss_pred eeEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCC
Confidence 568999999999854 377999988875332 259999997666 67899999999999999999999999998887
Q ss_pred CCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCCCC
Q 022377 106 RKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNVW 169 (298)
Q Consensus 106 ~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~~~ 169 (298)
..+.+.+.+.++.+++.+. .+.+..++. ||++.+++.+.++.+.+++. .+.+..+.+..++.+
T Consensus 154 ~~~~~~~~~~i~~~~~~~~-~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p~~is~y~l~~~~gT~l 218 (394)
T PRK08898 154 IHDGAEARAAIEIAAKHFD-NFNLDLMYALPGQTLDEALADVETALAFGPPHLSLYHLTLEPNTLF 218 (394)
T ss_pred CCCHHHHHHHHHHHHHhCC-ceEEEEEcCCCCCCHHHHHHHHHHHHhcCCCEEEEeeeEECCCChh
Confidence 7788999999999998765 677766544 78899999999999999887 577777777655543
No 96
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=98.94 E-value=1.5e-07 Score=82.96 Aligned_cols=148 Identities=16% Similarity=0.179 Sum_probs=117.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcc----ccHHHHHHHHhcc-CCCCcEEEEeCccc-hHhhHHHHHHcC
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR----KDIEEACFHLSKL-KGLKTLAMTTNGLT-LARKLPKLKESG 84 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~----~~~~~ii~~~~~~-~~~~~v~i~TNG~l-l~~~~~~l~~~~ 84 (298)
....+.+++.+.++.+.+.|+..|.|+||+ +-+. .++.++++.+++. .++. +.+.|.-.. ..+.++.++++|
T Consensus 88 ~~~~~~eei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~-Ievl~~d~~g~~e~l~~l~~aG 166 (302)
T TIGR00510 88 PLPPDPEEPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIK-IETLVPDFRGNIAALDILLDAP 166 (302)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCE-EEEeCCcccCCHHHHHHHHHcC
Confidence 344689999999999999999999999876 3231 2477999999874 4563 777664322 356789999999
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCee-EEEee
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI-RFIEF 161 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~-~~~~~ 161 (298)
.+.++.-+.+. +..+..+|...++++.++.++.+++. |+ .+...+++.-|++.+++.+.++++.+.|++. .+.+|
T Consensus 167 ~dv~~hnlEt~-~~l~~~vrr~~t~e~~Le~l~~ak~~~pgi-~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~igqY 244 (302)
T TIGR00510 167 PDVYNHNLETV-ERLTPFVRPGATYRWSLKLLERAKEYLPNL-PTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVTLGQY 244 (302)
T ss_pred chhhcccccch-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCC-eecceEEEECCCCHHHHHHHHHHHHhcCCCEEEeecc
Confidence 99999999986 78999999888899999999999998 67 6766665555899999999999999999853 34455
Q ss_pred e
Q 022377 162 M 162 (298)
Q Consensus 162 ~ 162 (298)
+
T Consensus 245 l 245 (302)
T TIGR00510 245 L 245 (302)
T ss_pred c
Confidence 4
No 97
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=98.94 E-value=2e-07 Score=86.94 Aligned_cols=157 Identities=17% Similarity=0.233 Sum_probs=119.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEc------CCccCcc-ccHHHHHHHHhccCCCCcEEE-EeCccch-HhhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLT------GGEPTVR-KDIEEACFHLSKLKGLKTLAM-TTNGLTL-ARKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~t------GGEPll~-~~~~~ii~~~~~~~~~~~v~i-~TNG~ll-~~~~~~l~~ 82 (298)
-...+++++.+-++.+.+.|.+.|.|+ +|+|+.+ +.+.++++.+.+..++..+.+ .++...+ ++.++.+++
T Consensus 161 ~r~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~~~r~~~~~p~~~~~ell~~~~~ 240 (430)
T TIGR01125 161 LRSRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIYWIRMHYLYPDELTDDVIDLMAE 240 (430)
T ss_pred ceecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHhh
Confidence 455678888887777777888888876 4777765 468899999987533532332 2444445 567888888
Q ss_pred cC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE---ecCCCHhHHHHHHHHHhhCCCe-e
Q 022377 83 SG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV---MRGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 83 ~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi---~~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
++ +..+.+++++.+++..+.+++..+.+.+.++++.+++++. .+.+.+.+ .||++.+++.+.++++.+.+++ +
T Consensus 241 ~~~~~~~l~iglES~s~~vLk~m~k~~~~~~~~~~i~~l~~~~~-~i~i~~~~I~G~PgET~e~~~~t~~fl~~~~~~~~ 319 (430)
T TIGR01125 241 GPKVLPYLDIPLQHASDRILKLMRRPGSGEQQLDFIERLREKCP-DAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRL 319 (430)
T ss_pred CCcccCceEeCCCCCCHHHHhhCCCCCCHHHHHHHHHHHHHhCC-CCeEeEEEEEECCCCCHHHHHHHHHHHHhcCCCEE
Confidence 74 6889999999999999999887889999999999999854 44444332 3788999999999999998884 5
Q ss_pred EEEeeecCCCCCC
Q 022377 157 RFIEFMPFDGNVW 169 (298)
Q Consensus 157 ~~~~~~p~~~~~~ 169 (298)
.+..|.|..++..
T Consensus 320 ~~~~~sp~pGT~~ 332 (430)
T TIGR01125 320 GAFTYSPEEGTDA 332 (430)
T ss_pred eeeeccCCCCCcc
Confidence 6677888876654
No 98
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=98.93 E-value=9.3e-08 Score=89.23 Aligned_cols=163 Identities=18% Similarity=0.356 Sum_probs=120.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC------------------CccCccccHHHHHHHHhccCCCCcEEEE---eC
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG------------------GEPTVRKDIEEACFHLSKLKGLKTLAMT---TN 69 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG------------------GEPll~~~~~~ii~~~~~~~~~~~v~i~---TN 69 (298)
+-...++|++.+-++.+.+.|++.|.|+| |+|+ +..+.++++.+.+. ++. +.+. ++
T Consensus 164 ~~rsr~~e~Vv~Ei~~l~~~g~kei~l~~~d~~~yg~d~~~~~~~~~~~~~-~~~~~~Ll~~l~~~-~~~-~r~~~~~p~ 240 (440)
T PRK14862 164 DLVSRPIGDVLREAERLVKAGVKELLVISQDTSAYGVDVKYRTGFWNGRPV-KTRMTDLCEALGEL-GAW-VRLHYVYPY 240 (440)
T ss_pred CccccCHHHHHHHHHHHHHCCCceEEEEecChhhhccccccccccccccch-hhHHHHHHHHHHhc-CCE-EEEecCCCC
Confidence 34567888888888888778888888763 4455 56788999999885 663 4433 33
Q ss_pred ccchHhhHHHHHHcCCC--eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE---ecCCCHhHHHH
Q 022377 70 GLTLARKLPKLKESGLT--SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV---MRGFNDDEICD 144 (298)
Q Consensus 70 G~ll~~~~~~l~~~~~~--~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi---~~~~n~~~i~~ 144 (298)
+ ..++.++.+++ +.. .+.|++++.+++..+.+++..+++.+++.++.+++.+. .+.+.+.+ .||++.+++++
T Consensus 241 ~-~~dell~~m~~-g~~~~~l~IglESgs~~vLk~m~r~~~~~~~~~~i~~lr~~~~-~i~i~t~~IvGfPgET~edf~~ 317 (440)
T PRK14862 241 P-HVDEVIPLMAE-GKILPYLDIPFQHASPRVLKRMKRPASVEKTLERIKKWREICP-DLTIRSTFIVGFPGETEEDFQM 317 (440)
T ss_pred c-CCHHHHHHHhc-CCCccccccccccCCHHHHHhcCCCCCHHHHHHHHHHHHHHCC-CceecccEEEECCCCCHHHHHH
Confidence 3 34667788877 533 78999999999999999887789999999999999743 34444432 38899999999
Q ss_pred HHHHHhhCCCe-eEEEeeecCCCCCCc-ccCCCCHHH
Q 022377 145 FVELTRDRPIN-IRFIEFMPFDGNVWN-VKKLVPYAE 179 (298)
Q Consensus 145 i~~~~~~~g~~-~~~~~~~p~~~~~~~-~~~~~~~~e 179 (298)
.++|+.+++++ +.+..|.|..++... ....++.++
T Consensus 318 tl~fi~e~~~d~~~~f~ysP~pGT~a~~~~~~v~~~~ 354 (440)
T PRK14862 318 LLDFLKEAQLDRVGCFKYSPVEGATANDLPDQVPEEV 354 (440)
T ss_pred HHHHHHHcCCCeeeeEeecCCCCCchhhCCCCCCHHH
Confidence 99999999984 567788898876543 223455433
No 99
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=98.92 E-value=1e-07 Score=90.39 Aligned_cols=153 Identities=14% Similarity=0.208 Sum_probs=121.3
Q ss_pred CCCCHHHHHHHHHHHH-hCCCCEEEEcCCccCcccc-HHHHHHHHhccCC-CC-cEEEEeCccch---HhhHHHHHHcCC
Q 022377 13 QLLSLNEILRLAYLFV-TSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKG-LK-TLAMTTNGLTL---ARKLPKLKESGL 85 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~-~~~~~~v~~tGGEPll~~~-~~~ii~~~~~~~~-~~-~v~i~TNG~ll---~~~~~~l~~~~~ 85 (298)
..-+++.+.+=|+.+. +.|+..+.|...+|++++. +.++++.+.+. + +. .+.+.|....+ ++.++.++++|+
T Consensus 220 R~rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~-~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~ 298 (497)
T TIGR02026 220 RHRDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIAR-NPISVTWGINTRVTDIVRDADILHLYRRAGL 298 (497)
T ss_pred ecCCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhc-CCCCeEEEEecccccccCCHHHHHHHHHhCC
Confidence 3456777666666554 4788999999999999875 66999988774 3 32 24555655433 357899999999
Q ss_pred CeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCCe-eEEEeeec
Q 022377 86 TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPIN-IRFIEFMP 163 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p 163 (298)
..|.+.+++.+++..+.+++..+.+.+.++++.++++|+ .+.+.+++. |+++.+++.+.++++.+++.+ +.+..+.|
T Consensus 299 ~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi-~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP 377 (497)
T TIGR02026 299 VHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNI-LSEAQFITGFENETDETFEETYRQLLDWDPDQANWLMYTP 377 (497)
T ss_pred cEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCC-cEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEEecC
Confidence 999999999999999999888889999999999999999 788776555 788999999999999998874 45556667
Q ss_pred CCCC
Q 022377 164 FDGN 167 (298)
Q Consensus 164 ~~~~ 167 (298)
..++
T Consensus 378 ~PGT 381 (497)
T TIGR02026 378 WPFT 381 (497)
T ss_pred CCCc
Confidence 6554
No 100
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=98.92 E-value=1.4e-08 Score=87.65 Aligned_cols=129 Identities=19% Similarity=0.265 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccCcccc-HHHHHHHHhccC--CCCcEEEEeCccch-HhhHHHHHHcCCCeEEEe
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLK--GLKTLAMTTNGLTL-ARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~-~~~ii~~~~~~~--~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iS 91 (298)
+......++.++..++...+.+|||||++.-+ ..++++.+++.. ++ ++++-|+|.+. .+.++.|.++|+|.|.+.
T Consensus 63 pV~~~eDii~ea~~~~a~GasiTGGdPl~~ieR~~~~ir~LK~efG~~f-HiHLYT~g~~~~~e~l~~L~eAGLDEIRfH 141 (353)
T COG2108 63 PVKSVEDIIEEAKLMDALGASITGGDPLLEIERTVEYIRLLKDEFGEDF-HIHLYTTGILATEEALKALAEAGLDEIRFH 141 (353)
T ss_pred ccCcHHHHHHHHHHhccccccccCCChHHHHHHHHHHHHHHHHhhccce-eEEEeeccccCCHHHHHHHHhCCCCeEEec
Confidence 33344556777777777889999999999876 778888888853 36 49999999988 568999999999999999
Q ss_pred cCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCee
Q 022377 92 LDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI 156 (298)
Q Consensus 92 ldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~ 156 (298)
.+.++ ....++.+++++.++++|. .+++.+-..|| -.+.+.++++++.+.+.++
T Consensus 142 p~~~~---------~~~~e~~i~~l~~A~~~g~-dvG~EiPaipg-~e~~i~e~~~~~~~~~~~F 195 (353)
T COG2108 142 PPRPG---------SKSSEKYIENLKIAKKYGM-DVGVEIPAIPG-EEEAILEFAKALDENGLDF 195 (353)
T ss_pred CCCcc---------ccccHHHHHHHHHHHHhCc-cceeecCCCcc-hHHHHHHHHHHHHhcccce
Confidence 86321 2346899999999999999 99999999995 5677889999999888653
No 101
>PRK07360 FO synthase subunit 2; Reviewed
Probab=98.91 E-value=1.2e-07 Score=86.46 Aligned_cols=149 Identities=21% Similarity=0.273 Sum_probs=109.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcc-cc-HHHHHHHHhcc-CCCCcEEEE----------eCccchHhhHH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR-KD-IEEACFHLSKL-KGLKTLAMT----------TNGLTLARKLP 78 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~-~~-~~~ii~~~~~~-~~~~~v~i~----------TNG~ll~~~~~ 78 (298)
..|+.|++.+.++++.+.|+..+.++||+ |... .+ +.++++.+++. .++. +... +.|.+..+.++
T Consensus 89 y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~-i~a~s~~ei~~~~~~~G~~~~e~l~ 167 (371)
T PRK07360 89 FWLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIH-LHAFSPMEVYFAAREDGLSYEEVLK 167 (371)
T ss_pred eeCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcc-eeeCCHHHHHHHHhhcCCCHHHHHH
Confidence 35999999999999999999999999985 7665 44 55899999874 2343 3322 46766678899
Q ss_pred HHHHcCCCeEE-EecCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-
Q 022377 79 KLKESGLTSVN-ISLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 79 ~l~~~~~~~v~-iSldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
+|+++|++.+. .+-...+++....+... .+++..++.++.++++|+ ++...+++.-|++.++..+.+.++++++.+
T Consensus 168 ~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl-~~~sg~i~G~gEt~edrv~~l~~lr~l~~~~ 246 (371)
T PRK07360 168 ALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGL-PTTSTMMYGHVETPEHRIDHLLILREIQQET 246 (371)
T ss_pred HHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-CceeeEEeeCCCCHHHHHHHHHHHHHhchhh
Confidence 99999999874 11111223333334443 368888999999999999 888887777788999999999999988763
Q ss_pred eEEEeeec
Q 022377 156 IRFIEFMP 163 (298)
Q Consensus 156 ~~~~~~~p 163 (298)
..+..|+|
T Consensus 247 ~g~~~fIp 254 (371)
T PRK07360 247 GGITEFVP 254 (371)
T ss_pred CCeeEEEe
Confidence 34445555
No 102
>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit. This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.
Probab=98.91 E-value=7.8e-08 Score=86.16 Aligned_cols=169 Identities=22% Similarity=0.232 Sum_probs=122.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcc-----------------ccHHHHHHHHhccCCCCcEEEEeCccchH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR-----------------KDIEEACFHLSKLKGLKTLAMTTNGLTLA 74 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~-----------------~~~~~ii~~~~~~~~~~~v~i~TNG~ll~ 74 (298)
..++.|++.+.++++.+.|+..+.++||+ |-.. ..+.++++.+++..++. .. .+-|.+.+
T Consensus 33 ~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~~~-~~-~~~g~lt~ 110 (322)
T TIGR03550 33 ALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEETGLL-PH-TNPGVMSR 110 (322)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcCCc-cc-cCCCCCCH
Confidence 37999999999999999999999999988 5442 22457777776533542 33 34455557
Q ss_pred hhHHHHHHcCCCeEEEecCCCCHHhhhhhcC----CCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHh
Q 022377 75 RKLPKLKESGLTSVNISLDTLVPAKFEFLTR----RKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTR 150 (298)
Q Consensus 75 ~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~----~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~ 150 (298)
+.++.|+++|.+ +.+++++.++..+..++. ...++..++.++.+++.|+ ++...+.+..|++.+++.+.+..++
T Consensus 111 e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi-~~~s~~i~G~gEt~ed~~~~l~~lr 188 (322)
T TIGR03550 111 DELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKI-PFTTGILIGIGETREERAESLLAIR 188 (322)
T ss_pred HHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCC-CccceeeEeCCCCHHHHHHHHHHHH
Confidence 889999999976 688888876665544442 2357888999999999999 8888877777889999999988888
Q ss_pred hCC-----C-eeEEEeeecCCCCCCcccCCCCHHHHHHHHH
Q 022377 151 DRP-----I-NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 151 ~~g-----~-~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~ 185 (298)
++. + .+..+.|.|..+++.......+..+.++.++
T Consensus 189 ~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iA 229 (322)
T TIGR03550 189 ELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVA 229 (322)
T ss_pred HHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHH
Confidence 765 4 3444567777555544444567777766543
No 103
>PTZ00413 lipoate synthase; Provisional
Probab=98.89 E-value=3.8e-07 Score=81.45 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=125.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCC--ccCcccc---HHHHHHHHhcc-CCCCcEEEEeCccc--hHhhHHHHHHc
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGG--EPTVRKD---IEEACFHLSKL-KGLKTLAMTTNGLT--LARKLPKLKES 83 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGG--EPll~~~---~~~ii~~~~~~-~~~~~v~i~TNG~l--l~~~~~~l~~~ 83 (298)
...++.+|+.++.+...+.|+..+.+|-| ..+-..+ +.+.++.+++. .++. +.+.+ |-+ ..+.++.|+++
T Consensus 174 p~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~-Ievli-gDf~g~~e~l~~L~eA 251 (398)
T PTZ00413 174 PPPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELL-LEALV-GDFHGDLKSVEKLANS 251 (398)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCe-EEEcC-CccccCHHHHHHHHhc
Confidence 47799999999999999999988888754 3344443 56778888773 2443 44433 323 25689999999
Q ss_pred CCCeEEEecCCCCHHhhhhhcC-CCcHHHHHHHHHHHHHc---CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEE
Q 022377 84 GLTSVNISLDTLVPAKFEFLTR-RKGHEKVMESINAAIEV---GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFI 159 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~-~~~~~~v~~~i~~l~~~---g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~ 159 (298)
|++.++-.|++ .+..|..+|. ..+|++.++.|+.+++. |+ .+....++..|++.+|+.++++.+.++|+++..+
T Consensus 252 G~dvynHNLET-v~rLyp~VRt~~atYe~sLe~Lr~AKe~f~~gi-~tcSGiIVGLGET~eEvie~m~dLrelGVDivtI 329 (398)
T PTZ00413 252 PLSVYAHNIEC-VERITPYVRDRRASYRQSLKVLEHVKEFTNGAM-LTKSSIMLGLGETEEEVRQTLRDLRTAGVSAVTL 329 (398)
T ss_pred CCCEEeccccc-CHhHHHHHccCcCCHHHHHHHHHHHHHHhcCCc-eEeeeeEecCCCCHHHHHHHHHHHHHcCCcEEee
Confidence 99999999999 5899999995 56899999999999987 77 7777888888999999999999999999976554
Q ss_pred -eeecCCCCCCcccCCCCHHHH
Q 022377 160 -EFMPFDGNVWNVKKLVPYAEM 180 (298)
Q Consensus 160 -~~~p~~~~~~~~~~~~~~~e~ 180 (298)
+|+......+.-....+.+++
T Consensus 330 GQYL~Ps~~h~~V~~yv~P~~F 351 (398)
T PTZ00413 330 GQYLQPTKTRLKVSRYAHPKEF 351 (398)
T ss_pred ccccCCCcccCCceeccCHHHH
Confidence 665433333333344555554
No 104
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=98.89 E-value=1.6e-07 Score=88.73 Aligned_cols=152 Identities=14% Similarity=0.153 Sum_probs=122.0
Q ss_pred CCCCHHHHHHHHHHHHhC--CCCEEEEcCCccCcccc-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEE
Q 022377 13 QLLSLNEILRLAYLFVTS--GVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~--~~~~v~~tGGEPll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
...+.|.+.+=|+.+.+. ++..+.|.++.++..++ +.++++.+++. ++. +.+.+...+..+.++.++++|+..|.
T Consensus 225 r~rs~e~V~~Ei~~~~~~~~~~~~i~f~Dd~f~~~~~~~~~l~~~l~~~-~i~-~~~~~~~~~~~e~l~~l~~aG~~~v~ 302 (472)
T TIGR03471 225 RTRSAESVIEEVKYALENFPEVREFFFDDDTFTDDKPRAEEIARKLGPL-GVT-WSCNARANVDYETLKVMKENGLRLLL 302 (472)
T ss_pred EeCCHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCCHHHHHHHHHHHhhc-Cce-EEEEecCCCCHHHHHHHHHcCCCEEE
Confidence 346788777766666553 67889888877777665 66999998874 774 77776655446789999999999999
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCCC
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPIN-IRFIEFMPFDGN 167 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~~ 167 (298)
+.+++.+++..+.++++.+.+.+.+.++.++++|+ .+...+++. ||++.+++.+.++++.+++.+ +.+..+.|..++
T Consensus 303 iGiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi-~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~l~P~PGT 381 (472)
T TIGR03471 303 VGYESGDQQILKNIKKGLTVEIARRFTRDCHKLGI-KVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGT 381 (472)
T ss_pred EcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCC-eEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeeecccCCCc
Confidence 99999999999999887789999999999999999 888777555 889999999999999998874 444455666555
No 105
>PRK12928 lipoyl synthase; Provisional
Probab=98.87 E-value=3.3e-07 Score=80.56 Aligned_cols=166 Identities=16% Similarity=0.174 Sum_probs=124.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCc----cCcc-ccHHHHHHHHhcc-CCCCcEEEEeCccc--hHhhHHHHHHc
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGE----PTVR-KDIEEACFHLSKL-KGLKTLAMTTNGLT--LARKLPKLKES 83 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE----Pll~-~~~~~ii~~~~~~-~~~~~v~i~TNG~l--l~~~~~~l~~~ 83 (298)
...++.+++.+.++.+.+.|++.|.++||. |-.. ..+.++++.+++. ..+ .+.+.|-..+ ..+.+..++++
T Consensus 84 ~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~p~~-~I~~ltp~~~~~~~e~L~~l~~A 162 (290)
T PRK12928 84 PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARNPGT-GIEVLTPDFWGGQRERLATVLAA 162 (290)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcCCCC-EEEEeccccccCCHHHHHHHHHc
Confidence 456999999999999999999999999875 2221 2477999999885 345 3666555433 35678999999
Q ss_pred CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcC--CCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEe
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG--YNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIE 160 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g--~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~ 160 (298)
|.+.+..-+.+. ++.++.+++..++++.++.++.+++.| + .+...+++.-|++.+++.+.++++.+++++ +...+
T Consensus 163 g~~i~~hnlEt~-~~vl~~m~r~~t~e~~le~l~~ak~~gp~i-~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~ 240 (290)
T PRK12928 163 KPDVFNHNLETV-PRLQKAVRRGADYQRSLDLLARAKELAPDI-PTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQ 240 (290)
T ss_pred CchhhcccCcCc-HHHHHHhCCCCCHHHHHHHHHHHHHhCCCc-eecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEc
Confidence 987777667764 789999998888999999999999998 7 666666555688999999999999999985 34446
Q ss_pred eecCCCCCCcccCCCCHHHH
Q 022377 161 FMPFDGNVWNVKKLVPYAEM 180 (298)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~e~ 180 (298)
|++.....+.-....+.++.
T Consensus 241 Yl~p~~~~~~v~~~~~~~~f 260 (290)
T PRK12928 241 YLRPSLAHLPVQRYWTPEEF 260 (290)
T ss_pred CCCCCccCCceeeccCHHHH
Confidence 65544444433444555544
No 106
>PRK08444 hypothetical protein; Provisional
Probab=98.87 E-value=2.4e-07 Score=83.60 Aligned_cols=171 Identities=18% Similarity=0.188 Sum_probs=121.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcccc-HHHHHHHHhcc-CCCCcEEEE----------eCccchHhhHHH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVRKD-IEEACFHLSKL-KGLKTLAMT----------TNGLTLARKLPK 79 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~~~-~~~ii~~~~~~-~~~~~v~i~----------TNG~ll~~~~~~ 79 (298)
..|+.|++.+.+.++.+.|+..|.+.||+ |.+..+ +.++++.+++. .++. +... +.|....+.+..
T Consensus 78 y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~-i~a~s~~Ei~~~a~~~g~~~~e~l~~ 156 (353)
T PRK08444 78 YTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLH-VKAMTAAEVDFLSRKFGKSYEEVLED 156 (353)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCce-EeeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 45999999999999999999999998765 666444 55999999874 2453 4432 455566789999
Q ss_pred HHHcCCCeEEE-ecCCCCHHhhhhhcCCCc-HHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-e
Q 022377 80 LKESGLTSVNI-SLDTLVPAKFEFLTRRKG-HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 80 l~~~~~~~v~i-Sldg~~~~~~~~ir~~~~-~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
|+++|++.+.- +..-.+++.+..+...+. .++.++.++.++++|+ ++...+++.-+++.++..+.+..++++..+ .
T Consensus 157 LkeAGl~~~~g~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi-~~~sg~l~G~gEt~edrv~hl~~Lr~Lq~~t~ 235 (353)
T PRK08444 157 MLEYGVDSMPGGGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGK-MSNATMLFGHIENREHRIDHMLRLRDLQDKTG 235 (353)
T ss_pred HHHhCcccCCCCCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCC-CccceeEEecCCCHHHHHHHHHHHHHhccccC
Confidence 99999995543 223334455577766554 6888888899999999 887777776678888888888888887663 3
Q ss_pred EEEeeecC----CCCCCcccCCCCHHHHHHHHH
Q 022377 157 RFIEFMPF----DGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 157 ~~~~~~p~----~~~~~~~~~~~~~~e~~~~i~ 185 (298)
-+..|.|. .+++.......+..+.++.++
T Consensus 236 gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iA 268 (353)
T PRK08444 236 GFNAFIPLVYQRENNYLKVEKFPSSQEILKTIA 268 (353)
T ss_pred CceEEEecccCCCCCcCCCCCCCCHHHHHHHHH
Confidence 44555554 334443334577777766554
No 107
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=98.85 E-value=2.4e-07 Score=86.72 Aligned_cols=136 Identities=13% Similarity=0.186 Sum_probs=111.6
Q ss_pred CCEEEEcCCccCcc-c-cHHHHHHHHhccC----CCCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhc
Q 022377 32 VDKIRLTGGEPTVR-K-DIEEACFHLSKLK----GLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLT 104 (298)
Q Consensus 32 ~~~v~~tGGEPll~-~-~~~~ii~~~~~~~----~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir 104 (298)
+..|.|.||.|++- + ++.++++.+++.. +. .+++.+|...+ ++.++.++++|+.+|+|.+++.+++..+.+.
T Consensus 115 i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~-eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lg 193 (449)
T PRK09058 115 IHAVYFGGGTPTALSAEDLARLITALREYLPLAPDC-EITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAG 193 (449)
T ss_pred eeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCC-EEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhC
Confidence 56889999999975 3 4778888887743 34 48999997766 6789999999999999999999999999988
Q ss_pred CCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCCC
Q 022377 105 RRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGNV 168 (298)
Q Consensus 105 ~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~~ 168 (298)
+..+.+.+++.++.+++.|+..+.+..++. ||++.+.+.+.++++.+++. .+.+..+.+..++.
T Consensus 194 R~~~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~~is~y~L~~~pgT~ 259 (449)
T PRK09058 194 RKDDREEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLDGVDLYALNLLPGTP 259 (449)
T ss_pred CCCCHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeccccCCCCH
Confidence 888899999999999999953677766544 88899999999999999888 46666666655443
No 108
>TIGR02491 NrdG anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055) and utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin ) to produce a glycine-centered radical in the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487). The two components form an alpha-2/beta-2 heterodimer.
Probab=98.84 E-value=1.8e-08 Score=80.51 Aligned_cols=93 Identities=13% Similarity=0.046 Sum_probs=65.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCC-CCEEEEcCCccCccc--c-HHHHHHHHhccCCCCcEEEEeCccchHhhHH-----HHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSG-VDKIRLTGGEPTVRK--D-IEEACFHLSKLKGLKTLAMTTNGLTLARKLP-----KLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~-~~~v~~tGGEPll~~--~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~-----~l~ 81 (298)
...+|+.+++.++++.+.+.+ +..|.|+|||||+++ + +.++++++++..++. ..+.|||+...+.++ .+.
T Consensus 42 ~g~~~~~~~~~~i~~~l~~~~~~~gVt~sGGEPllq~~~~~l~~ll~~~k~~~~~~-~~~~~tG~~~~~~~~~~~~~~~l 120 (154)
T TIGR02491 42 GGKEFTEALEKEIIRDLNDNPLIDGLTLSGGDPLYPRNVEELIELVKKIKAEFPEK-DIWLWTGYTWEEILEDEKHLEVL 120 (154)
T ss_pred CCCcCCHHHHHHHHHHHHhcCCcCeEEEeChhhCCCCCHHHHHHHHHHHHHhCCCC-CEEEeeCccHHHHhcchhHHHHH
Confidence 356899999999999888775 678999999999987 4 569999998744664 667799998866543 454
Q ss_pred HcCCCeEEEecCCCCHHh--hhhhcCC
Q 022377 82 ESGLTSVNISLDTLVPAK--FEFLTRR 106 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~--~~~ir~~ 106 (298)
+ .+| +-|.....+++. +..++|.
T Consensus 121 ~-~~D-~liDgk~~~~~~~~~~~~~gs 145 (154)
T TIGR02491 121 K-YID-VLVDGKFELSKKDLKLKFRGS 145 (154)
T ss_pred h-hCC-EEEechhhhhcccCCCCCCCC
Confidence 4 467 544444443332 4345553
No 109
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.81 E-value=8.2e-07 Score=82.93 Aligned_cols=158 Identities=15% Similarity=0.233 Sum_probs=121.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc------ccHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR------KDIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKLKE 82 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~------~~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l~~ 82 (298)
+....+++++.+=++.+.+.|++.|.|+|...+.+ ..+.++++.+.+..++..+.+.+ +...+ ++.++.+.+
T Consensus 171 ~~rsr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~~~~~~Ll~~l~~~~g~~~i~~~~~~p~~l~~ell~~~~~ 250 (437)
T PRK14331 171 KERSRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGDVPFSELLYAVAEIDGVERIRFTTGHPRDLDEDIIKAMAD 250 (437)
T ss_pred CcccCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCCCCHHHHHHHHhcCCCccEEEEeccCcccCCHHHHHHHHc
Confidence 34567889988888888888999999999887764 34778888877654543355544 22234 567888887
Q ss_pred c--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCe-e
Q 022377 83 S--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 83 ~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
+ ++..+.+++++.+++.-+.+++..+.+.+.+.++.++++ |+ .+...+ +-.||++.+++.+.++++.+++.+ +
T Consensus 251 ~~~~~~~l~igiqSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~~gi-~i~~d~IvG~PgET~ed~~~tl~~l~~l~~~~i 329 (437)
T PRK14331 251 IPQVCEHLHLPFQAGSDRILKLMDRGYTKEEYLEKIELLKEYIPDI-TFSTDIIVGFPTETEEDFEETLDVLKKVEFEQV 329 (437)
T ss_pred CCccCCceecccccCChHHHHHcCCCCCHHHHHHHHHHHHHhCCCC-EEecCEEEECCCCCHHHHHHHHHHHHhcCccee
Confidence 7 488999999999999999988877899999999999998 77 555544 444899999999999999998874 3
Q ss_pred EEEeeecCCCCCC
Q 022377 157 RFIEFMPFDGNVW 169 (298)
Q Consensus 157 ~~~~~~p~~~~~~ 169 (298)
....|.|..++..
T Consensus 330 ~~f~~sp~pGT~~ 342 (437)
T PRK14331 330 FSFKYSPRPGTPA 342 (437)
T ss_pred eeeEecCCCCcch
Confidence 5557788766543
No 110
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=98.80 E-value=5.1e-07 Score=83.39 Aligned_cols=131 Identities=18% Similarity=0.330 Sum_probs=110.1
Q ss_pred CCEEEEcCCccCccc-c-HHHHHHHHhccCC-----CCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhh
Q 022377 32 VDKIRLTGGEPTVRK-D-IEEACFHLSKLKG-----LKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFL 103 (298)
Q Consensus 32 ~~~v~~tGGEPll~~-~-~~~ii~~~~~~~~-----~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~i 103 (298)
+..|.|.||.|.+-. + +..+++.+++..+ . .++|..|...+ .+.+..++++|+.+|++-+.+++++.-..+
T Consensus 88 v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~~~~~~~-EitiE~nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~~~lk~l 166 (416)
T COG0635 88 VKTIYFGGGTPSLLSPEQLERLLKALRELFNDLDPDA-EITIEANPGTVEAEKFKALKEAGVNRISLGVQSFNDEVLKAL 166 (416)
T ss_pred EEEEEECCCccccCCHHHHHHHHHHHHHhcccCCCCc-eEEEEeCCCCCCHHHHHHHHHcCCCEEEeccccCCHHHHHHh
Confidence 568889999999864 3 6688888876432 5 59999998877 679999999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCC-eeEEEeeec
Q 022377 104 TRRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFNDDEICDFVELTRDRPI-NIRFIEFMP 163 (298)
Q Consensus 104 r~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p 163 (298)
.+..+.+.+.+++..+++.|+..+.+-..+ .|+++.+++.+.++.+.+++. ++....+.-
T Consensus 167 gR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~QT~~~~~~~l~~a~~l~pdhis~y~L~~ 228 (416)
T COG0635 167 GRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQTLESLKEDLEQALELGPDHLSLYSLAI 228 (416)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhCCCCEEEEeeeec
Confidence 999999999999999999999667666544 378899999999999999988 466655543
No 111
>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=98.79 E-value=8.3e-07 Score=82.74 Aligned_cols=172 Identities=19% Similarity=0.220 Sum_probs=123.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcc-cc-HHHHHHHHhccC---C-CCcEEEEeCccch-HhhHHHHHHc
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR-KD-IEEACFHLSKLK---G-LKTLAMTTNGLTL-ARKLPKLKES 83 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~-~~-~~~ii~~~~~~~---~-~~~v~i~TNG~ll-~~~~~~l~~~ 83 (298)
+..|+.|++.+-+..+.+.|+..+.+.+|| |.-. .+ +.++++.+++.. + +. .+..|.-.+ .+.+++|+++
T Consensus 112 r~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~~~~eyi~e~i~~I~~~~~~~g~i~--~v~inig~lt~eey~~Lkea 189 (469)
T PRK09613 112 RKKLTQEEIREEVKALEDMGHKRLALVAGEDPPNCDIEYILESIKTIYSTKHGNGEIR--RVNVNIAPTTVENYKKLKEA 189 (469)
T ss_pred ceECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCCHHHHHHHHHHHHHhccccCcce--eeEEEeecCCHHHHHHHHHc
Confidence 356999999999999999999999998777 4322 23 457777777621 2 22 344454344 6799999999
Q ss_pred CCCeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhC----CC--
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDR----PI-- 154 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~----g~-- 154 (298)
|++.+.+-..+.++++|..+... .+|+..+++++.+.++|+..|.+...+.-+....|..+++..+..+ |+
T Consensus 190 Gv~~~~l~qETY~~ety~~~hp~g~k~~y~~Rl~t~~rA~~aGi~~Vg~G~L~GLge~~~E~~~l~~hl~~L~~~~gvgp 269 (469)
T PRK09613 190 GIGTYQLFQETYHKPTYEKMHPSGPKSDYDWRLTAMDRAMEAGIDDVGIGVLFGLYDYKFEVLGLLMHAEHLEERFGVGP 269 (469)
T ss_pred CCCEEEeccccCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHcCCCeeCeEEEEcCCCCHHHHHHHHHHHHHHHHhhCCCC
Confidence 99999999999999999988643 3599999999999999993388877666555555655555555444 43
Q ss_pred e-eEEEeeecCCCCCCccc-CCCCHHHHHHHHH
Q 022377 155 N-IRFIEFMPFDGNVWNVK-KLVPYAEMLDTVV 185 (298)
Q Consensus 155 ~-~~~~~~~p~~~~~~~~~-~~~~~~e~~~~i~ 185 (298)
+ +++..+.|..++++... ..++.++++..+.
T Consensus 270 ~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA 302 (469)
T PRK09613 270 HTISVPRLRPADGSDLENFPYLVSDEDFKKIVA 302 (469)
T ss_pred ccccccceecCCCCCcccCCCCCCHHHHHHHHH
Confidence 2 56667888877666332 3467666655543
No 112
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=98.77 E-value=1.5e-06 Score=80.67 Aligned_cols=159 Identities=11% Similarity=0.255 Sum_probs=122.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc-------ccHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR-------KDIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~-------~~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l~ 81 (298)
+-...+++++.+-++.+.+.|++.|.|+|.+...+ ..+.++++.+.+..++..+.+.+ +...+ ++.++.++
T Consensus 163 ~~r~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~ 242 (414)
T TIGR01579 163 RSRSVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDLKNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIA 242 (414)
T ss_pred CCccCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCCCCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHH
Confidence 44668899998888888888999999988665544 24778988887754553355532 33334 56778887
Q ss_pred HcC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHH--cCCCCEEEEEE-EecCCCHhHHHHHHHHHhhCCCe-
Q 022377 82 ESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIE--VGYNPVKVNCV-VMRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 82 ~~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~--~g~~~v~i~~v-i~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
+++ ...+.+.+++.+++..+.+++..+.+.+.+.++.+++ .|+ .+...++ -.||++.+++.+.++++.+++.+
T Consensus 243 ~~~~~~~~l~lglESgs~~vLk~m~R~~~~~~~~~~v~~l~~~~~gi-~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~ 321 (414)
T TIGR01579 243 SEKRLCPHLHLSLQSGSDRVLKRMRRKYTRDDFLKLVNKLRSVRPDY-AFGTDIIVGFPGESEEDFQETLRMVKEIEFSH 321 (414)
T ss_pred hcCccCCCeEECCCcCChHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-eeeeeEEEECCCCCHHHHHHHHHHHHhCCCCE
Confidence 766 6789999999999999999887889999999999999 777 6666553 44889999999999999998874
Q ss_pred eEEEeeecCCCCCCc
Q 022377 156 IRFIEFMPFDGNVWN 170 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~ 170 (298)
+.+..|.|..++...
T Consensus 322 ~~~~~~sp~pGT~~~ 336 (414)
T TIGR01579 322 LHIFPYSARPGTPAS 336 (414)
T ss_pred EEeeecCCCCCCchh
Confidence 566778887766543
No 113
>COG1625 Fe-S oxidoreductase, related to NifB/MoaA family [Energy production and conversion]
Probab=98.77 E-value=2e-07 Score=83.38 Aligned_cols=135 Identities=18% Similarity=0.267 Sum_probs=110.4
Q ss_pred EEEEc-CCccCccccHHHHHHHHhccC---CCCcEE-EEeCccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCc
Q 022377 34 KIRLT-GGEPTVRKDIEEACFHLSKLK---GLKTLA-MTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKG 108 (298)
Q Consensus 34 ~v~~t-GGEPll~~~~~~ii~~~~~~~---~~~~v~-i~TNG~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~ 108 (298)
.+..+ ||+++.+|++.+.+++++... .+. ++ +..||..++...+.+.++|++.|+||+++.+++.-.++.+...
T Consensus 81 ~~~~~~~~d~~c~p~le~~~~r~~~~~~d~~~r-L~~tsG~~~~lt~~~~~i~~~gvdev~~SVhtT~p~lR~klm~n~~ 159 (414)
T COG1625 81 GAKQCGNGDTFCYPDLEPRGRRARLYYKDDDIR-LSFTSGSGFTLTNRAERIIDAGVDEVYFSVHTTNPELRAKLMKNPN 159 (414)
T ss_pred ceeecCCCCcccCcchhhhhhHHHhhcCCccce-eeeeeccceeccchHHHHHHcCCCeeEEEEeeCCHHHHHHHhcCCc
Confidence 45555 799999999999999998852 142 44 4456655677888899999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEEEecCCC-HhHHHHHHHHHhhCCCe-eEEEeeecCCCCCCc
Q 022377 109 HEKVMESINAAIEVGYNPVKVNCVVMRGFN-DDEICDFVELTRDRPIN-IRFIEFMPFDGNVWN 170 (298)
Q Consensus 109 ~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n-~~~i~~i~~~~~~~g~~-~~~~~~~p~~~~~~~ 170 (298)
-...++.++.+.+.++ .+..++|+.||.| -++++++++-+.++|.+ +..+.+.|+|-+..+
T Consensus 160 A~~~le~L~~f~~~~~-~v~a~iVl~PGvNdge~L~kT~~dL~~~g~~~~~~~~~~pvGlt~~n 222 (414)
T COG1625 160 AEQLLELLRRFAERCI-EVHAQIVLCPGVNDGEELEKTLEDLEEWGAHEVILMRVVPVGLTRYN 222 (414)
T ss_pred HHHHHHHHHHHHHhhh-heeeEEEEcCCcCcHHHHHHHHHHHHHhCcCceeEEEeecceeeecC
Confidence 7779999999999999 8999999999999 68899999999999884 344446688755443
No 114
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=98.76 E-value=8e-07 Score=75.78 Aligned_cols=173 Identities=13% Similarity=0.076 Sum_probs=121.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccH-HHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcC
Q 022377 6 VDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDI-EEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG 84 (298)
Q Consensus 6 ~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~-~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~ 84 (298)
++..+.+.++++|++.++++.+.+.|...|.|-||||+-+..+ .+.++++.+ .+. +.-+||++...+.++.|.. -
T Consensus 140 ISq~~~g~~v~~e~La~i~~~~~~~GakNvN~Vgg~Ptp~lp~Ile~l~~~~~--~iP-vvwNSnmY~s~E~l~lL~g-v 215 (335)
T COG1313 140 ISQFGIGKEVTPEDLAEIILELRRHGAKNVNFVGGDPTPHLPFILEALRYASE--NIP-VVWNSNMYMSEETLKLLDG-V 215 (335)
T ss_pred ccccCCCeEecHHHHHHHHHHHHHhcCcceeecCCCCCCchHHHHHHHHHHhc--CCC-EEEecCCccCHHHHHHhhc-c
Confidence 3445578899999999999999999999999999999998764 599999877 475 8899999877666665543 3
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCc-HHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhH-HHHHHHHHhhC-CCeeEEE--
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKG-HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDE-ICDFVELTRDR-PINIRFI-- 159 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~-~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~-i~~i~~~~~~~-g~~~~~~-- 159 (298)
+|..-=.+.-.+++--.+..+.++ |+-+.+|+..+.+..- .+-|+..++|| +.+. -..+++|+.++ |-++..+
T Consensus 216 VDiyL~DfKYgNdeca~kySkvp~Y~eVv~rn~~~~~~~~g-~~iiRHLVlPg-hlecCTkpI~~wiae~~g~~~~vNiM 293 (335)
T COG1313 216 VDIYLPDFKYGNDECAEKYSKVPNYWEVVTRNILEAKEQVG-GLIIRHLVLPG-HLECCTKPILRWIAENLGNDVRVNIM 293 (335)
T ss_pred ceeeecccccCCHHHHHHhhcCCchHHHHHHHHHHHHHhcC-ceEEEEEecCC-chhhccHHHHHHHHHhCCCCeeEEeh
Confidence 553334455556665555556555 8999999999988754 57899999997 5554 78899998874 4333221
Q ss_pred -eeecCCCCCCcc--cCCCCHHHHHHHH
Q 022377 160 -EFMPFDGNVWNV--KKLVPYAEMLDTV 184 (298)
Q Consensus 160 -~~~p~~~~~~~~--~~~~~~~e~~~~i 184 (298)
+|.|.......+ ...++.+|+.+.+
T Consensus 294 ~QY~P~ykA~eypeI~R~lt~eE~e~a~ 321 (335)
T COG1313 294 FQYRPEYKAEEYPEINRRLTREEYEKAL 321 (335)
T ss_pred hhccchhhhhhchhhcccCCHHHHHHHH
Confidence 445544321111 2345666665544
No 115
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=98.73 E-value=1.8e-06 Score=80.48 Aligned_cols=159 Identities=13% Similarity=0.223 Sum_probs=120.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC------CccCcc-ccHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG------GEPTVR-KDIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG------GEPll~-~~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l~ 81 (298)
+-...+.+++.+-++.+.+.|++.|.|+| |+++-. ..+.++++.+.+..++..+.+.+ +...+ ++.++.+.
T Consensus 164 ~~r~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~~i~~ell~~m~ 243 (429)
T TIGR00089 164 RERSRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLKGETNLADLLRELSKIDGIERIRFGSSHPDDVTDDLIELIA 243 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCCCCcCHHHHHHHHhcCCCCCEEEECCCChhhcCHHHHHHHH
Confidence 44567889988888888888999999987 444332 35778988887754554455544 44444 56788888
Q ss_pred HcC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcC--CCCEEEEEE-EecCCCHhHHHHHHHHHhhCCC-e
Q 022377 82 ESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG--YNPVKVNCV-VMRGFNDDEICDFVELTRDRPI-N 155 (298)
Q Consensus 82 ~~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g--~~~v~i~~v-i~~~~n~~~i~~i~~~~~~~g~-~ 155 (298)
+++ +..+.+++++.+++..+.+++..+.+.+.+.++.+++.+ + .+...++ -.||++.+++.+.++++.++++ .
T Consensus 244 ~~~~~~~~l~igiES~s~~vLk~m~R~~~~~~~~~~i~~lr~~~~~i-~i~~~~IvG~PgET~ed~~~tl~~i~~~~~~~ 322 (429)
T TIGR00089 244 ENPKVCKHLHLPVQSGSDRILKRMNRKYTREEYLDIVEKIRAKIPDA-AITTDIIVGFPGETEEDFEETLDLVEEVKFDK 322 (429)
T ss_pred hCCCccCceeeccccCChHHHHhCCCCCCHHHHHHHHHHHHHHCCCC-EEEeeEEEECCCCCHHHHHHHHHHHHhcCCCE
Confidence 874 889999999999999998888778999999999999988 5 4544443 3488999999999999999887 4
Q ss_pred eEEEeeecCCCCCCc
Q 022377 156 IRFIEFMPFDGNVWN 170 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~ 170 (298)
+.+..|.|..++...
T Consensus 323 ~~~~~~sp~pgT~~~ 337 (429)
T TIGR00089 323 LHSFIYSPRPGTPAA 337 (429)
T ss_pred eeccccCCCCCCchh
Confidence 566677787665543
No 116
>PRK05481 lipoyl synthase; Provisional
Probab=98.72 E-value=1.4e-06 Score=76.73 Aligned_cols=148 Identities=19% Similarity=0.249 Sum_probs=116.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc----cCcc-ccHHHHHHHHhcc-CCCCcEEEEeC-ccchHhhHHHHHHcCC
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE----PTVR-KDIEEACFHLSKL-KGLKTLAMTTN-GLTLARKLPKLKESGL 85 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE----Pll~-~~~~~ii~~~~~~-~~~~~v~i~TN-G~ll~~~~~~l~~~~~ 85 (298)
..++.+++.+.++++...|++.|.|+||+ |-.. ..+.++++.+++. .++. +.+.|. .....+.+..++++|.
T Consensus 78 ~s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~~~~~~~~l~~Ll~~I~~~~p~ir-I~~l~~~~~~~~e~L~~l~~ag~ 156 (289)
T PRK05481 78 LPLDPDEPERVAEAVARMGLKYVVITSVDRDDLPDGGAQHFAETIRAIRELNPGTT-IEVLIPDFRGRMDALLTVLDARP 156 (289)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCcccccHHHHHHHHHHHHhhCCCcE-EEEEccCCCCCHHHHHHHHhcCc
Confidence 56999999999999999999999999987 3222 2477999988873 4563 666554 3223578888999998
Q ss_pred CeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-eEEEeee
Q 022377 86 TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-IRFIEFM 162 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~ 162 (298)
..+..-+.+ .++.++.+++..+++..++.++.+++. |+ .+...+++.-|++.+++.+.++++.+++++ +....|.
T Consensus 157 ~i~~~~~et-s~~vlk~m~r~~t~e~~le~i~~ar~~~pgi-~~~t~~IvGfGET~ed~~~tl~~lrel~~d~v~if~Ys 234 (289)
T PRK05481 157 DVFNHNLET-VPRLYKRVRPGADYERSLELLKRAKELHPGI-PTKSGLMVGLGETDEEVLEVMDDLRAAGVDILTIGQYL 234 (289)
T ss_pred ceeeccccC-hHHHHHHhCCCCCHHHHHHHHHHHHHhCCCC-eEeeeeEEECCCCHHHHHHHHHHHHhcCCCEEEEEccC
Confidence 877766666 477888888877899999999999999 88 777666655588999999999999999985 4444666
Q ss_pred c
Q 022377 163 P 163 (298)
Q Consensus 163 p 163 (298)
|
T Consensus 235 ~ 235 (289)
T PRK05481 235 Q 235 (289)
T ss_pred C
Confidence 6
No 117
>PRK08445 hypothetical protein; Provisional
Probab=98.71 E-value=1.8e-06 Score=78.02 Aligned_cols=141 Identities=18% Similarity=0.228 Sum_probs=109.6
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCc-ccc-HHHHHHHHhccC-CCCcEEEEeCc----------cchHhhHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTV-RKD-IEEACFHLSKLK-GLKTLAMTTNG----------LTLARKLP 78 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll-~~~-~~~ii~~~~~~~-~~~~v~i~TNG----------~ll~~~~~ 78 (298)
...|+.|++.+.++++.+.|...|.++||++.- ..+ +.++++.+++.. .+. +.-.|-+ ...++.++
T Consensus 70 ~y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~-~~a~s~~ei~~~a~~~~~~~~e~L~ 148 (348)
T PRK08445 70 AYILSFEEIDKKIEELLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTIT-IHGFSAVEIDYIAKISKISIKEVLE 148 (348)
T ss_pred CeeCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcE-EEEccHHHHHHHHHHhCCCHHHHHH
Confidence 346899999999999999999999999887654 444 569999998842 242 3212222 12368899
Q ss_pred HHHHcCCCeEE-EecCCCCHHhhhhhcC-CCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCC
Q 022377 79 KLKESGLTSVN-ISLDTLVPAKFEFLTR-RKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPI 154 (298)
Q Consensus 79 ~l~~~~~~~v~-iSldg~~~~~~~~ir~-~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~ 154 (298)
+|+++|++.+. +.+...++++.+.+.+ ..+.+.-++.++.++++|+ ++...+++..+++.++..+.+..++++..
T Consensus 149 ~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi-~~~sg~i~G~~Et~edr~~~l~~lreLq~ 225 (348)
T PRK08445 149 RLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRWLEVHRQAHLIGM-KSTATMMFGTVENDEEIIEHWERIRDLQD 225 (348)
T ss_pred HHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-eeeeEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 99999999885 8899888888888854 4457777999999999999 88877777777888888888888888765
No 118
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.70 E-value=4.4e-06 Score=78.17 Aligned_cols=159 Identities=13% Similarity=0.177 Sum_probs=121.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccc----cHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHHHHc
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRK----DIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKLKES 83 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~----~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l~~~ 83 (298)
++-...++|++.+-++.+.+.|++.|.|+|..-..+. ++.++++.+.+..++..+.+.+ +...+ ++.++.++++
T Consensus 178 G~~rsr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~ 257 (449)
T PRK14332 178 GRERSRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHPKDFPDHLLSLMAKN 257 (449)
T ss_pred CCcccCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCcccCCHHHHHHHHhC
Confidence 3456788999999899888899999999987776653 3677877776543443355543 43334 5567888887
Q ss_pred C--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE---EEecCCCHhHHHHHHHHHhhCCCe-eE
Q 022377 84 G--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC---VVMRGFNDDEICDFVELTRDRPIN-IR 157 (298)
Q Consensus 84 ~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~---vi~~~~n~~~i~~i~~~~~~~g~~-~~ 157 (298)
+ +..+.+.+++.+++..+.+++..+.+...+.++.++++.- .+.+.+ +-.||++.+++.+.++++.+++++ +.
T Consensus 258 ~~~~~~l~lgvQSgsd~vLk~m~R~~t~~~~~~~i~~lr~~~p-~i~i~td~IvGfPgET~edf~~tl~~v~~l~~~~~~ 336 (449)
T PRK14332 258 PRFCPNIHLPLQAGNTRVLEEMKRSYSKEEFLDVVKEIRNIVP-DVGITTDIIVGFPNETEEEFEDTLAVVREVQFDMAF 336 (449)
T ss_pred CCccceEEECCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHhCC-CCEEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 7 7899999999999999999887889999999999999732 334333 333889999999999999999985 46
Q ss_pred EEeeecCCCCCC
Q 022377 158 FIEFMPFDGNVW 169 (298)
Q Consensus 158 ~~~~~p~~~~~~ 169 (298)
...|.|..++..
T Consensus 337 ~f~ys~~~GT~a 348 (449)
T PRK14332 337 MFKYSEREGTMA 348 (449)
T ss_pred EEEecCCCCChh
Confidence 667888776644
No 119
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=98.68 E-value=4e-06 Score=78.39 Aligned_cols=159 Identities=14% Similarity=0.220 Sum_probs=120.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc---------ccHHHHHHHHhccCCCCcEEEE-eCccch-HhhHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR---------KDIEEACFHLSKLKGLKTLAMT-TNGLTL-ARKLPK 79 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~---------~~~~~ii~~~~~~~~~~~v~i~-TNG~ll-~~~~~~ 79 (298)
+....+.+++.+-++.+.+.|++.|.|+|.....+ ..+.++++.+.+..++..+.+. .+...+ ++.++.
T Consensus 170 ~~rsr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~ 249 (438)
T TIGR01574 170 DEISRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELSTIDGIERIRFTSSHPLDFDDDLIEV 249 (438)
T ss_pred CCcccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHhcCCceEEEEecCCcccCCHHHHHH
Confidence 34578899999888888889999999988655544 2477888888754455434443 244444 567888
Q ss_pred HHHcC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCC
Q 022377 80 LKESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPI 154 (298)
Q Consensus 80 l~~~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~ 154 (298)
+.+++ +..+.+++++.+++.-+.+++..+.+..++.++.+++. ++ .+...+ +-.||++.+++.+.++++.+.+.
T Consensus 250 l~~~g~~~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~ir~~~~~i-~i~~d~IvG~PgEt~ed~~~tl~~i~~~~~ 328 (438)
T TIGR01574 250 FANNPKLCKSMHLPVQSGSSEILKLMKRGYTREWYLNLVRKLRAACPNV-SISTDIIVGFPGETEEDFEETLDLLREVEF 328 (438)
T ss_pred HHhCCCccCceeeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-eEeeCEEEeCCCCCHHHHHHHHHHHHhcCC
Confidence 88887 88999999999999998888877899999999999987 44 444333 34488999999999999999887
Q ss_pred -eeEEEeeecCCCCCCc
Q 022377 155 -NIRFIEFMPFDGNVWN 170 (298)
Q Consensus 155 -~~~~~~~~p~~~~~~~ 170 (298)
.+....|.|..++...
T Consensus 329 ~~~~~~~~sp~pGT~~~ 345 (438)
T TIGR01574 329 DSAFSFIYSPRPGTPAA 345 (438)
T ss_pred CeeeeEEecCCCCCchh
Confidence 4555677787666543
No 120
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.68 E-value=4.7e-06 Score=77.43 Aligned_cols=156 Identities=17% Similarity=0.208 Sum_probs=117.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc----------ccHHHHHHHHhccCCCCcEEEE-eCccch-HhhHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR----------KDIEEACFHLSKLKGLKTLAMT-TNGLTL-ARKLPK 79 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~----------~~~~~ii~~~~~~~~~~~v~i~-TNG~ll-~~~~~~ 79 (298)
....++|++.+-++.+.+.|++.|.|+|..-..+ ..+.++++.+.+..++..+.+. ++...+ ++.++.
T Consensus 153 ~~sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~~~g~~~ir~~s~~p~~~~~ell~~ 232 (420)
T PRK14339 153 EISIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSEIEGLERIRFTSPHPLHMDDKFLEE 232 (420)
T ss_pred CCCCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhcCCCccEEEECCCChhhcCHHHHHH
Confidence 3456889988888888888999999988664432 2477888888764455335553 454445 567788
Q ss_pred HHHc--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCC
Q 022377 80 LKES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPI 154 (298)
Q Consensus 80 l~~~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~ 154 (298)
+.++ +...+.|.+++.+++.-+.++++.+.+..++.++.+++. ++ .+...+ +-.||++.+++++.++|+.+.+.
T Consensus 233 ~~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~~~~~~~v~~lr~~~p~i-~i~~d~IvGfPgETeedf~~Tl~fl~~l~~ 311 (420)
T PRK14339 233 FAKNPKICKSIHMPLQSGSSEILKAMKRGYTKEWFLNRAEKLRALVPEV-SISTDIIVGFPGESDKDFEDTMDVLEKVRF 311 (420)
T ss_pred HHcCCCccCceEeCCccCCHHHHHhccCCCCHHHHHHHHHHHHHHCCCC-EEEEEEEEECCCCCHHHHHHHHHHHHhcCC
Confidence 8776 478999999999999999998888899999999999997 44 444443 33488999999999999999887
Q ss_pred e-eEEEeeecCCCCC
Q 022377 155 N-IRFIEFMPFDGNV 168 (298)
Q Consensus 155 ~-~~~~~~~p~~~~~ 168 (298)
+ +....|.|..+++
T Consensus 312 ~~~~~f~~sp~pGT~ 326 (420)
T PRK14339 312 EQIFSFKYSPRPLTE 326 (420)
T ss_pred CEEeeEecCCCCCCc
Confidence 5 5556788877665
No 121
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.66 E-value=5.2e-06 Score=77.08 Aligned_cols=158 Identities=13% Similarity=0.137 Sum_probs=121.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc-------ccHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR-------KDIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~-------~~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l~ 81 (298)
+....++|++.+=++.+.+.|++.|.|+|..-..+ +.+.++++.+.+..++..+.+.+ +...+ ++.++.+.
T Consensus 149 ~~rsrs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~~ell~~l~ 228 (418)
T PRK14336 149 REKSRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDISQKLIDAMA 228 (418)
T ss_pred CCccCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhhcCHHHHHHHH
Confidence 44678899988888888888999999998776542 24778888887654543355543 34334 56777777
Q ss_pred Hc--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCCe-
Q 022377 82 ES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVV-MRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 82 ~~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
+. ++..+.+.+++.+++..+.+++..+.+..++.++.++++ |+ .+...+++ .||++.+++.+.++++.+.+.+
T Consensus 229 ~~~~~~~~l~lglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~pgi-~i~~d~IvGfPGET~edf~~tl~fi~~~~~~~ 307 (418)
T PRK14336 229 HLPKVCRSLSLPVQAGDDTILAAMRRGYTNQQYRELVERLKTAMPDI-SLQTDLIVGFPSETEEQFNQSYKLMADIGYDA 307 (418)
T ss_pred hcCccCCceecCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCC-EEEEEEEEECCCCCHHHHHHHHHHHHhcCCCE
Confidence 74 478999999999999999998877899999999999998 77 66655544 4889999999999999998874
Q ss_pred eEEEeeecCCCCCC
Q 022377 156 IRFIEFMPFDGNVW 169 (298)
Q Consensus 156 ~~~~~~~p~~~~~~ 169 (298)
+....|.|..++..
T Consensus 308 ~~v~~ysp~pGT~a 321 (418)
T PRK14336 308 IHVAAYSPRPQTVA 321 (418)
T ss_pred EEeeecCCCCCChh
Confidence 45667778766544
No 122
>PRK05927 hypothetical protein; Provisional
Probab=98.65 E-value=1.3e-06 Score=78.93 Aligned_cols=171 Identities=19% Similarity=0.272 Sum_probs=119.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcccc-HHHHHHHHhccC-CCCcE----------EEEeCccchHhhHHH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVRKD-IEEACFHLSKLK-GLKTL----------AMTTNGLTLARKLPK 79 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~~~-~~~ii~~~~~~~-~~~~v----------~i~TNG~ll~~~~~~ 79 (298)
..|+.|++.+.++++.+.|+..+.|+||+ |-.-.+ +.++++.+++.. ++. + ...+.|.+..+.+++
T Consensus 74 y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~~~~e~~~~~i~~ik~~~p~l~-~~~~s~~ei~~~~~~~G~~~~e~l~~ 152 (350)
T PRK05927 74 YLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQLGIDYLEELVRITVKEFPSLH-PHFFSAVEIAHAAQVSGISTEQALER 152 (350)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCHHHHHHHHHHHHHHCCCCc-ccCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 47999999999999999999999999999 444444 448888888742 342 2 133578788899999
Q ss_pred HHHcCCCeEEE-ecCCCCHHhhhhhcCCC-cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-e
Q 022377 80 LKESGLTSVNI-SLDTLVPAKFEFLTRRK-GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 80 l~~~~~~~v~i-Sldg~~~~~~~~ir~~~-~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
|+++|++.+.= .+...++...+.+...+ +.+.-++.++.+++.|+ ++...+++.-|++.++..+.+..++++.-. -
T Consensus 153 Lk~aGl~~l~g~~~Et~~~~~~~~~~p~k~~~~~rl~~i~~A~~lGi-~~~sg~l~G~gEt~e~ri~~l~~Lr~lqd~~~ 231 (350)
T PRK05927 153 LWDAGQRTIPGGGAEILSERVRKIISPKKMGPDGWIQFHKLAHRLGF-RSTATMMFGHVESPEDILLHLQTLRDAQDENP 231 (350)
T ss_pred HHHcCcccCCCCCchhCCHHHhhccCCCCCCHHHHHHHHHHHHHcCC-CcCceeEEeeCCCHHHHHHHHHHHHHhhHhhC
Confidence 99999984442 44444555555555544 46999999999999999 887777776688988877777777775531 1
Q ss_pred EEEeeecC----CCCCCccc--CCCCHHHHHHHHH
Q 022377 157 RFIEFMPF----DGNVWNVK--KLVPYAEMLDTVV 185 (298)
Q Consensus 157 ~~~~~~p~----~~~~~~~~--~~~~~~e~~~~i~ 185 (298)
.|..|+|. ..+..... ...+..+.++.++
T Consensus 232 gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iA 266 (350)
T PRK05927 232 GFYSFIPWSYKPGNTALGRRVPHQASPELYYRILA 266 (350)
T ss_pred CeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHH
Confidence 34455553 22222211 1467777766554
No 123
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.65 E-value=7.7e-06 Score=76.76 Aligned_cols=158 Identities=12% Similarity=0.196 Sum_probs=120.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccc---------cHHHHHHHHhc----cCCCCcEE-EEeCccch-Hhh
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRK---------DIEEACFHLSK----LKGLKTLA-MTTNGLTL-ARK 76 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~---------~~~~ii~~~~~----~~~~~~v~-i~TNG~ll-~~~ 76 (298)
....+++++.+-++.+.+.|++.|.|+|.....+. .+.++++.+.+ ..++..+. .+++...+ ++.
T Consensus 178 ~rsr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ir~~s~~p~~i~~el 257 (455)
T PRK14335 178 EISRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIRWIRFMSSHPKDLSDDL 257 (455)
T ss_pred CccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCceEEEEeecCcccCCHHH
Confidence 34678999888888888889999999887665431 36677777631 12443344 34566555 567
Q ss_pred HHHHHH--cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEE-ecCCCHhHHHHHHHHHhh
Q 022377 77 LPKLKE--SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVV-MRGFNDDEICDFVELTRD 151 (298)
Q Consensus 77 ~~~l~~--~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~ 151 (298)
++.+.+ .++..+.+.+.+.+++.-+.+++..+.+.+.+.++.+++. |+ .+...+++ .||++.+++++.++++.+
T Consensus 258 l~~m~~~~~gc~~l~iglQSgsd~vLk~m~R~~t~e~~~~~v~~ir~~~pgi-~i~~d~IvGfPgET~edf~~Tl~~i~~ 336 (455)
T PRK14335 258 IATIAQESRLCRLVHLPVQHGSNGVLKRMNRSYTREHYLSLVGKLKASIPNV-ALSTDILIGFPGETEEDFEQTLDLMRE 336 (455)
T ss_pred HHHHHhCCCCCCeEEEccCcCCHHHHHHcCCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 787877 4789999999999999998888877899999999999998 77 66655544 488999999999999999
Q ss_pred CCC-eeEEEeeecCCCCCCc
Q 022377 152 RPI-NIRFIEFMPFDGNVWN 170 (298)
Q Consensus 152 ~g~-~~~~~~~~p~~~~~~~ 170 (298)
++. .+.+..|.|..++...
T Consensus 337 l~~~~~~~~~~sp~pGT~~~ 356 (455)
T PRK14335 337 VEFDSAFMYHYNPREGTPAY 356 (455)
T ss_pred cCCCeEEEEEecCCCCCchh
Confidence 887 4566778888776543
No 124
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.64 E-value=6.2e-06 Score=77.11 Aligned_cols=159 Identities=10% Similarity=0.174 Sum_probs=119.7
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc-------ccHHHHHHHHhccCCCCcEEEE-eCccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR-------KDIEEACFHLSKLKGLKTLAMT-TNGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~-------~~~~~ii~~~~~~~~~~~v~i~-TNG~ll-~~~~~~l~ 81 (298)
+....+++++.+-++.+.+.|++.|.|+|..-+.+ .++.++++.+.+..++..+.+. ++...+ ++.++.+.
T Consensus 172 ~~Rsr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~P~~i~~ell~~l~ 251 (439)
T PRK14328 172 RERSRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEIDGLERIRFMTSHPKDLSDDLIEAIA 251 (439)
T ss_pred CcccCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhcCCCcEEEEecCChhhcCHHHHHHHH
Confidence 44667899998888888888999999998775542 3477888888764454335543 355444 56788888
Q ss_pred HcC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCe-
Q 022377 82 ESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 82 ~~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
+++ +..+.+.+++.+++.-+.+++..+.+.+++.++.+++. ++ .+...+ +-.||++.+++.+.++++.+++.+
T Consensus 252 ~~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i-~i~~d~IvG~PgET~ed~~~tl~~i~~l~~~~ 330 (439)
T PRK14328 252 DCDKVCEHIHLPVQSGSNRILKKMNRHYTREYYLELVEKIKSNIPDV-AITTDIIVGFPGETEEDFEETLDLVKEVRYDS 330 (439)
T ss_pred hCCCcCceeeeCCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEECCCCCHHHHHHHHHHHHhcCCCc
Confidence 775 78999999999999998888877899999999999987 44 344444 334889999999999999998874
Q ss_pred eEEEeeecCCCCCCc
Q 022377 156 IRFIEFMPFDGNVWN 170 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~ 170 (298)
+.+..|.|..++...
T Consensus 331 ~~~~~~sp~pGT~~~ 345 (439)
T PRK14328 331 AFTFIYSKRKGTPAA 345 (439)
T ss_pred ccceEecCCCCChhh
Confidence 556677787665543
No 125
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.64 E-value=5.6e-06 Score=77.58 Aligned_cols=157 Identities=13% Similarity=0.153 Sum_probs=117.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc---------ccHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHHH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR---------KDIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKLK 81 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~---------~~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l~ 81 (298)
...+++++.+=++.+.+.|++.|.|+|-.-..+ ..+.++++.+.+..++..+.+.+ +...+ ++.++.+.
T Consensus 174 ~sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~l~ 253 (444)
T PRK14325 174 VSRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAAIDGIERIRYTTSHPRDFTDDLIEAYA 253 (444)
T ss_pred ccCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHH
Confidence 467889988888888888999998876543332 14678888877654543355543 44445 56778887
Q ss_pred HcC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCe-
Q 022377 82 ESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 82 ~~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
+++ +..+.+++++.+++.-+.+++..+.+.+.+.++.++++ |+ .+...+ +-.||++.+++.+.++++.+++.+
T Consensus 254 ~~~~~~~~l~igiqSgs~~vLk~m~R~~~~~~~~~~i~~lr~~~~gi-~v~~~~IvG~PgET~ed~~~tl~~i~~~~~~~ 332 (444)
T PRK14325 254 DLPKLVPFLHLPVQSGSDRILKAMNRGHTALEYKSIIRKLRAARPDI-AISSDFIVGFPGETDEDFEATMKLIEDVGFDQ 332 (444)
T ss_pred cCCcccCceeccCCcCCHHHHHhCCCCCCHHHHHHHHHHHHHHCCCC-EEEeeEEEECCCCCHHHHHHHHHHHHhcCCCe
Confidence 764 78999999999999998888877899999999999998 55 454444 344889999999999999998874
Q ss_pred eEEEeeecCCCCCCc
Q 022377 156 IRFIEFMPFDGNVWN 170 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~ 170 (298)
+.+..|.|..++...
T Consensus 333 ~~~~~~sp~pGT~~~ 347 (444)
T PRK14325 333 SFSFIYSPRPGTPAA 347 (444)
T ss_pred eeeeeccCCCCCchh
Confidence 455677787766543
No 126
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.61 E-value=6.7e-06 Score=77.78 Aligned_cols=173 Identities=15% Similarity=0.126 Sum_probs=121.9
Q ss_pred CCCCHHHHHHHHHHHHhCC--CCEE--EEcCCccCcccc--HHHHHHHHhccC--------------------------C
Q 022377 13 QLLSLNEILRLAYLFVTSG--VDKI--RLTGGEPTVRKD--IEEACFHLSKLK--------------------------G 60 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~--~~~v--~~tGGEPll~~~--~~~ii~~~~~~~--------------------------~ 60 (298)
..-+.+++..-++++...| +..| .|.||.++..|. ...+++.+.+.. .
T Consensus 113 ~~dpy~q~~~rl~~l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~ 192 (522)
T TIGR01211 113 DYDPYEQVTARLEQLEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRC 192 (522)
T ss_pred CCCcHHHHHHHHHHHHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCe
Confidence 3467788888888888866 4344 788999999875 334554443311 1
Q ss_pred CCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cCCC
Q 022377 61 LKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RGFN 138 (298)
Q Consensus 61 ~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~~n 138 (298)
+ .+++.|+.-.+ ++.++.|+++|+..|.+.+++.++++.+.+.++.+.+.++++++.++++|+ .+.+.+++. ||++
T Consensus 193 v-gitiEtRPD~i~~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~-~v~~~LM~GLPgqt 270 (522)
T TIGR01211 193 V-GLTIETRPDYCREEHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGL-KVVYHIMPGLPGSS 270 (522)
T ss_pred E-EEEEEEcCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC-eEEEEeecCCCCCC
Confidence 3 36788888777 678999999999999999999999999999988899999999999999999 777766544 6677
Q ss_pred HhHHHHHHHHHhh---CCC-eeEEEeeecCCCCC----Cccc--CCCCHHHHHHHHHHh
Q 022377 139 DDEICDFVELTRD---RPI-NIRFIEFMPFDGNV----WNVK--KLVPYAEMLDTVVKK 187 (298)
Q Consensus 139 ~~~i~~i~~~~~~---~g~-~~~~~~~~p~~~~~----~~~~--~~~~~~e~~~~i~~~ 187 (298)
.+...+.++.+.+ ++. .+++..+.+..++. |... ...+.++.++.+...
T Consensus 271 ~e~~~~t~~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~ 329 (522)
T TIGR01211 271 FERDLEMFREIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEI 329 (522)
T ss_pred HHHHHHHHHHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 7776666666653 555 35555555444332 2111 234566665555443
No 127
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.61 E-value=9.8e-06 Score=75.78 Aligned_cols=157 Identities=11% Similarity=0.138 Sum_probs=119.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc------ccHHHHHHHHhccC-CCCcEEEEe-Cccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR------KDIEEACFHLSKLK-GLKTLAMTT-NGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~------~~~~~ii~~~~~~~-~~~~v~i~T-NG~ll-~~~~~~l~ 81 (298)
+-...+.|++.+=++.+.+.|++.|.|+|.....+ .++.++++.+.+.. +. ++.+.+ +...+ ++.++.+.
T Consensus 174 ~~rsr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~~~~-rir~~~~~p~~l~~ell~~~~ 252 (445)
T PRK14340 174 RERSHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAAPEM-RIRFTTSHPKDISESLVRTIA 252 (445)
T ss_pred CCcCCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcCCCc-EEEEccCChhhcCHHHHHHHH
Confidence 44667888888888888888999999988665543 34678888776532 33 355543 33334 56778887
Q ss_pred Hc--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCe-
Q 022377 82 ES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 82 ~~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
++ ++..+.+.+.+.+++.-+.+++..+.+.+.+.++.+++. |+ .+...+ +-.||++.+++++.++++.+.+.+
T Consensus 253 ~~~~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~pgi-~i~td~IvGfPgET~edf~~tl~~~~~~~~~~ 331 (445)
T PRK14340 253 ARPNICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAIPGV-TLSTDLIAGFCGETEEDHRATLSLMEEVRFDS 331 (445)
T ss_pred hCCCCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEeccEEEECCCCCHHHHHHHHHHHHhcCCCE
Confidence 75 689999999999999998888877899999999999998 77 665554 444899999999999999998874
Q ss_pred eEEEeeecCCCCCC
Q 022377 156 IRFIEFMPFDGNVW 169 (298)
Q Consensus 156 ~~~~~~~p~~~~~~ 169 (298)
+.+..|.|..++..
T Consensus 332 ~~~f~~sp~pGT~~ 345 (445)
T PRK14340 332 AFMFYYSVRPGTLA 345 (445)
T ss_pred EeeEEecCCCCChh
Confidence 45567888776653
No 128
>COG1509 KamA Lysine 2,3-aminomutase [Amino acid transport and metabolism]
Probab=98.60 E-value=1.9e-06 Score=75.86 Aligned_cols=132 Identities=19% Similarity=0.216 Sum_probs=95.3
Q ss_pred CCCHHHHHHHHHHHHhCC-CCEEEEcCCccCcccc--HHHHHHHHhccCCCCcEEEEeCccc-----hHh-hHHHHHHcC
Q 022377 14 LLSLNEILRLAYLFVTSG-VDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTNGLT-----LAR-KLPKLKESG 84 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~-~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~~v~i~TNG~l-----l~~-~~~~l~~~~ 84 (298)
.++.+++.+.++-+.+.. +..|.||||+||+-.+ +..|++.+++...++.+.|-|-.-. +++ .++.|.+.+
T Consensus 140 ~~~~~~~~~al~YIa~hPeI~eVllSGGDPL~ls~~~L~~ll~~L~~IpHv~iiRi~TR~pvv~P~RIt~~L~~~l~~~~ 219 (369)
T COG1509 140 GFNKEEWDKALDYIAAHPEIREVLLSGGDPLSLSDKKLEWLLKRLRAIPHVKIIRIGTRLPVVLPQRITDELCEILGKSR 219 (369)
T ss_pred cCCHHHHHHHHHHHHcCchhheEEecCCCccccCHHHHHHHHHHHhcCCceeEEEeecccceechhhccHHHHHHHhccC
Confidence 379999999999998864 7899999999999876 7799999998755555555555443 323 344444423
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHh--HHHHHHHHHhhCCCe
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDD--EICDFVELTRDRPIN 155 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~--~i~~i~~~~~~~g~~ 155 (298)
..|.+..+-..+. .++ ..+.+++++|+++|+ .+.-++|+.+|.|++ -+.++.+-+...|+.
T Consensus 220 -~~v~~~tH~NHp~---Eit-----~e~~~A~~~L~~aGv-~l~NQsVLLrGVND~~evl~~L~~~L~~~gV~ 282 (369)
T COG1509 220 -KPVWLVTHFNHPN---EIT-----PEAREACAKLRDAGV-PLLNQSVLLRGVNDDPEVLKELSRALFDAGVK 282 (369)
T ss_pred -ceEEEEcccCChh---hcC-----HHHHHHHHHHHHcCc-eeecchheecccCCCHHHHHHHHHHHHHcCCc
Confidence 3355555443332 222 367889999999999 888899999999974 367777777777874
No 129
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=98.57 E-value=1.4e-05 Score=74.35 Aligned_cols=165 Identities=15% Similarity=0.163 Sum_probs=117.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc-----ccHHHHHHHHhccCCCCcEEEEe-Ccc----chHhhHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR-----KDIEEACFHLSKLKGLKTLAMTT-NGL----TLARKLPKL 80 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~-----~~~~~ii~~~~~~~~~~~v~i~T-NG~----ll~~~~~~l 80 (298)
+-...++|++.+-++.+.+.|++.|.|+|.+-..+ ..+.++++.+.+..+...+.+.+ +.. ..++.++.+
T Consensus 158 ~~rsr~~e~Vl~Ei~~l~~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~i~~~~~ir~~~~~p~~~~~~~~~l~~~~ 237 (420)
T TIGR01578 158 KLASYPPEKIVEKARQLVAEGCKEIWITSQDTGAYGRDIGSRLPELLRLITEIPGEFRLRVGMMNPKNVLEILDELANVY 237 (420)
T ss_pred CcccCCHHHHHHHHHHHHHCCCeEEEEEeeccccccCCCCcCHHHHHHHHHhCCCCcEEEEcCCCCCcccccCHHHHHHH
Confidence 34567889988888888888999999998654432 24677887776543322244432 221 123445555
Q ss_pred HHcC-CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEE-EecCCCHhHHHHHHHHHhhCCC-e
Q 022377 81 KESG-LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCV-VMRGFNDDEICDFVELTRDRPI-N 155 (298)
Q Consensus 81 ~~~~-~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~v-i~~~~n~~~i~~i~~~~~~~g~-~ 155 (298)
...+ ...+.+++++.+++..+.+++..+.+...+.++.+++. |+ .+...++ -.||++.+++.+.++++.+++. .
T Consensus 238 ~~~~~~~~l~iglQSgsd~iL~~m~R~~~~~~~~~~i~~i~~~~~~i-~i~~~~IvG~PgET~ed~~~t~~~~~~~~~~~ 316 (420)
T TIGR01578 238 QHEKVYKFLHLPVQSGSDSVLKEMKREYTVSDFEDIVDKFRERFPDL-TLSTDIIVGFPTETDDDFEETMELLRKYRPEK 316 (420)
T ss_pred hcccccCceEeCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEEeeEEEeCCCCCHHHHHHHHHHHHHhCCCE
Confidence 4434 57899999999999998888877889999999999998 66 5555544 4488999999999999999887 4
Q ss_pred eEEEeeecCCCCCCcccCCCC
Q 022377 156 IRFIEFMPFDGNVWNVKKLVP 176 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~~~~~~~ 176 (298)
+.+..|.|..++........+
T Consensus 317 i~~~~~~p~pGT~~~~~~~v~ 337 (420)
T TIGR01578 317 INITKFSPRPGTPAAKMKRIP 337 (420)
T ss_pred EEEEEeeCCCCCcccCCCCCC
Confidence 677788888776544333344
No 130
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.56 E-value=1.7e-05 Score=75.12 Aligned_cols=157 Identities=14% Similarity=0.203 Sum_probs=118.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc--------ccHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR--------KDIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKL 80 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~--------~~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l 80 (298)
+....++|++.+-++.+.+.|++.|.|+|..-..+ ..+.++++.+.+. ++..+.++| +...+ ++.++.+
T Consensus 237 ~~Rsr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~-~i~~ir~~s~~P~~i~deli~~m 315 (509)
T PRK14327 237 KERSRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKI-DIPRVRFTTSHPRDFDDHLIEVL 315 (509)
T ss_pred CCeeCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhC-CCceEEEeecCcccCCHHHHHHH
Confidence 44678899999888888888999999987443221 2467888888774 554466554 44344 5678888
Q ss_pred HHcC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEE--E-EEecCCCHhHHHHHHHHHhhCCCe
Q 022377 81 KESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN--C-VVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 81 ~~~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~--~-vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
.+++ +..+.+.+++.+++.-+.+++..+.+..++.++.++++.. .+.+. + +-.||++.+++.+.++++.+.+.+
T Consensus 316 ~~~g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~p-~i~i~tdiIvGfPgET~edf~~Tl~~v~~l~~d 394 (509)
T PRK14327 316 AKGGNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAIP-NVALTTDIIVGFPNETDEQFEETLSLYREVGFD 394 (509)
T ss_pred HhcCCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCC-CcEEeeeEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence 8887 5689999999999999888887889999999999999843 44443 3 345889999999999999998874
Q ss_pred -eEEEeeecCCCCCC
Q 022377 156 -IRFIEFMPFDGNVW 169 (298)
Q Consensus 156 -~~~~~~~p~~~~~~ 169 (298)
+....|.|..++..
T Consensus 395 ~~~~f~ysprpGT~a 409 (509)
T PRK14327 395 HAYTFIYSPREGTPA 409 (509)
T ss_pred eEEEeeeeCCCCCch
Confidence 44556778766654
No 131
>PRK08629 coproporphyrinogen III oxidase; Provisional
Probab=98.54 E-value=1.3e-05 Score=74.68 Aligned_cols=145 Identities=16% Similarity=0.200 Sum_probs=105.4
Q ss_pred HHHHHHHHHh---C--CCCEEEEcCCccCcccc-HHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEec
Q 022377 20 ILRLAYLFVT---S--GVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISL 92 (298)
Q Consensus 20 ~~~~i~~~~~---~--~~~~v~~tGGEPll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSl 92 (298)
+..+++++.. . .+..|.|.||-|++.++ +.++++.+++..++..+++.+|...+ ++.++.+.+. +++++|.+
T Consensus 85 ~~~L~~Ei~~~~~~~~~~~siy~GGGTPs~l~~~L~~ll~~i~~~f~i~eis~E~~P~~lt~e~L~~l~~~-vnrlsiGV 163 (433)
T PRK08629 85 FISLRKEMEMVKELGYDFESMYVGGGTTTILEDELAKTLELAKKLFSIKEVSCESDPNHLDPPKLKQLKGL-IDRLSIGV 163 (433)
T ss_pred HHHHHHHHHHHHhcCCceEEEEECCCccccCHHHHHHHHHHHHHhCCCceEEEEeCcccCCHHHHHHHHHh-CCeEEEec
Confidence 4445554432 2 35688899999998765 66888888876566569999998877 5688999888 99999999
Q ss_pred CCCCHHhhhhhcCCCcHHHH---HHHHHHHHHcCCCCEEEEEE-EecCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCC
Q 022377 93 DTLVPAKFEFLTRRKGHEKV---MESINAAIEVGYNPVKVNCV-VMRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDG 166 (298)
Q Consensus 93 dg~~~~~~~~ir~~~~~~~v---~~~i~~l~~~g~~~v~i~~v-i~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~ 166 (298)
.+.++++-+.+.+..++..+ ++.++.+++... .+.+..+ -.||++.+++.+.++++.+++. .+.+..+++...
T Consensus 164 QS~~d~vLk~~gR~h~~~~~~~~~~~l~~~~~~~~-~v~~DlI~GlPgqT~e~~~~~l~~~~~l~p~~is~y~L~~~~~ 241 (433)
T PRK08629 164 QSFNDDILKMVDRYEKFGSGQETFEKIMKAKGLFP-IINVDLIFNFPGQTDEVLQHDLDIAKRLDPRQITTYPLMKSHQ 241 (433)
T ss_pred CcCCHHHHHHcCCCCChhHHHHHHHHHHHHhccCC-eEEEEEEccCCCCCHHHHHHHHHHHHhCCCCEEEEccceeccC
Confidence 99999998888776665444 555555444423 4555543 3388899999999999999887 466665554433
No 132
>PRK05926 hypothetical protein; Provisional
Probab=98.52 E-value=3.1e-06 Score=76.95 Aligned_cols=149 Identities=17% Similarity=0.174 Sum_probs=112.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCcc-Ccccc-HHHHHHHHhcc-CCCCcEEEEeC----------ccchHhhHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEP-TVRKD-IEEACFHLSKL-KGLKTLAMTTN----------GLTLARKLP 78 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEP-ll~~~-~~~ii~~~~~~-~~~~~v~i~TN----------G~ll~~~~~ 78 (298)
...|+.|++.+.++++ +.|+..+.+.||+. -+..+ +.++++.+++. .++. +.-.|- +....+.++
T Consensus 96 ~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~~~e~~~e~i~~Ik~~~p~i~-i~a~s~~Ei~~~~~~~~~~~~e~l~ 173 (370)
T PRK05926 96 GWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSCNLAYYEELFSKIKQNFPDLH-IKALTAIEYAYLSKLDNLPVKEVLQ 173 (370)
T ss_pred cccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCCCHHHHHHHHHHHHHhCCCee-EEECCHHHHHHHHhhcCCCHHHHHH
Confidence 3469999999999988 68999999999884 33333 55888888874 2453 433332 223467799
Q ss_pred HHHHcCCCeEEE-ecCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe-
Q 022377 79 KLKESGLTSVNI-SLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 79 ~l~~~~~~~v~i-Sldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
.|+++|++.+.. ..+..+++..+.+... .+.+.-++.++.++++|+ ++...+++..|++.++..+.+..+++++.+
T Consensus 174 ~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~e~l~~i~~a~~~Gi-~~~sgmi~G~gEt~edrv~~l~~Lr~Lq~~t 252 (370)
T PRK05926 174 TLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQGFLEIHKTAHSLGI-PSNATMLCYHRETPEDIVTHMSKLRALQDKT 252 (370)
T ss_pred HHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-cccCceEEeCCCCHHHHHHHHHHHHhcCCcc
Confidence 999999997664 3555566666666543 358889999999999999 888888887889999999999999998873
Q ss_pred eEEEeeec
Q 022377 156 IRFIEFMP 163 (298)
Q Consensus 156 ~~~~~~~p 163 (298)
.-|..|+|
T Consensus 253 ~gf~~fIp 260 (370)
T PRK05926 253 SGFKNFIL 260 (370)
T ss_pred CCeeeeEe
Confidence 45666666
No 133
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.51 E-value=2.3e-05 Score=73.24 Aligned_cols=158 Identities=13% Similarity=0.208 Sum_probs=116.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCcc------Ccc-ccHHHHHHHHhccCCCCcEEEE-eCccch-HhhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEP------TVR-KDIEEACFHLSKLKGLKTLAMT-TNGLTL-ARKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEP------ll~-~~~~~ii~~~~~~~~~~~v~i~-TNG~ll-~~~~~~l~~ 82 (298)
....+++++.+=++.+.+.|++.|.|+|..- +-. ..+.++++.+.+..++..+.+. ++...+ ++.++.+.+
T Consensus 166 ~rsr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~p~~~~~ell~~l~~ 245 (434)
T PRK14330 166 EKSRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKIEGIERIWFLTSYPTDFSDELIEVIAN 245 (434)
T ss_pred CccCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhcCCceEEEEecCChhhcCHHHHHHHhc
Confidence 4567888888888888888999999976432 222 3477888877654455433332 343344 567777777
Q ss_pred cC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCe-e
Q 022377 83 SG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPIN-I 156 (298)
Q Consensus 83 ~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~-~ 156 (298)
++ ...+.|.+++.+++.-+.+++..+.+...+.++.+++. ++ .+...+ +-.||++.+++.+.++++.+.+++ +
T Consensus 246 ~~~~~~~l~iglQSgsd~vLk~M~R~~~~~~~~~~i~~lr~~~~~i-~i~~d~IvGfPgET~edf~~tl~fi~~~~~~~~ 324 (434)
T PRK14330 246 SPKVAKSIHLPVQSGSNRILKLMNRRYTREEYLELIEKIRSKVPDA-SISSDIIVGFPTETEEDFMETVDLVEKAQFERL 324 (434)
T ss_pred CCcccCceecCcCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-EEEEEEEEECCCCCHHHHHHHHHHHHhcCCCEE
Confidence 76 67899999999999998888877899999999999997 44 454444 334889999999999999999884 5
Q ss_pred EEEeeecCCCCCCc
Q 022377 157 RFIEFMPFDGNVWN 170 (298)
Q Consensus 157 ~~~~~~p~~~~~~~ 170 (298)
.+..|.|..+++..
T Consensus 325 ~~~~~sp~pGT~~~ 338 (434)
T PRK14330 325 NLAIYSPREGTVAW 338 (434)
T ss_pred eeeeccCCCCChhh
Confidence 66778887776543
No 134
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.49 E-value=2e-05 Score=73.83 Aligned_cols=158 Identities=14% Similarity=0.198 Sum_probs=116.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC------------CccCc--cccHHHHHHHHhccCCCCcEEEE-eCccch-H
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG------------GEPTV--RKDIEEACFHLSKLKGLKTLAMT-TNGLTL-A 74 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG------------GEPll--~~~~~~ii~~~~~~~~~~~v~i~-TNG~ll-~ 74 (298)
+....+++++.+=++.+.+.|++.|.|+| +.|.. ...+.++++.+.+..++.++.+. ++...+ +
T Consensus 173 ~~rsr~~e~V~~Ei~~l~~~g~kei~l~~~~~~~yg~d~~~~~p~~~~~~~l~~Ll~~i~~~~~~~rir~~~~~p~~~~~ 252 (448)
T PRK14333 173 KEQSRTPEAIRAEIEELAAQGYKEITLLGQNIDAYGRDLPGTTPEGRHQHTLTDLLYYIHDVEGIERIRFATSHPRYFTE 252 (448)
T ss_pred CCcccCHHHHHHHHHHHHHCCCcEEEEEecccchhcCCCCCccccccccccHHHHHHHHHhcCCCeEEEECCCChhhhhH
Confidence 34467888888777777778888888865 22332 12578888888775565445553 344445 4
Q ss_pred hhHHHHHHc--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEE-EecCCCHhHHHHHHHHH
Q 022377 75 RKLPKLKES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCV-VMRGFNDDEICDFVELT 149 (298)
Q Consensus 75 ~~~~~l~~~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~v-i~~~~n~~~i~~i~~~~ 149 (298)
+.++.+.+. ++..+.|.+++.+++.-+.+++..+.+...+.++.++++ ++ .+...++ -.||++.+++++.++++
T Consensus 253 eli~~~~~~~~~~~~l~igiQSgsd~vLk~m~R~~t~e~~~~~i~~lr~~~p~i-~i~~d~IvGfPgET~edf~~tl~~l 331 (448)
T PRK14333 253 RLIKACAELPKVCEHFHIPFQSGDNEILKAMARGYTHEKYRRIIDKIREYMPDA-SISADAIVGFPGETEAQFENTLKLV 331 (448)
T ss_pred HHHHHHhcCCcccccccCCCccCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCc-EEEeeEEEECCCCCHHHHHHHHHHH
Confidence 566777664 478899999999999999988888899999999999998 44 4444443 33889999999999999
Q ss_pred hhCCCe-eEEEeeecCCCCCC
Q 022377 150 RDRPIN-IRFIEFMPFDGNVW 169 (298)
Q Consensus 150 ~~~g~~-~~~~~~~p~~~~~~ 169 (298)
.+++.+ +.+..|.|..++..
T Consensus 332 ~~~~~~~~~~~~~sp~pGT~~ 352 (448)
T PRK14333 332 EEIGFDQLNTAAYSPRPGTPA 352 (448)
T ss_pred HHcCCCEEeeeeeecCCCCch
Confidence 999884 66677888766653
No 135
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.46 E-value=4.1e-05 Score=72.70 Aligned_cols=159 Identities=12% Similarity=0.180 Sum_probs=117.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccC------cc-ccHHHHHHHHhccCCCCcEEEEe-Cccch-HhhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT------VR-KDIEEACFHLSKLKGLKTLAMTT-NGLTL-ARKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl------l~-~~~~~ii~~~~~~~~~~~v~i~T-NG~ll-~~~~~~l~ 81 (298)
+....++|++.+=++.+.+.|+..|.|+|-.=. -. ..+.++++.+.+..++..+.+++ +...+ ++.++.+.
T Consensus 182 ~~rsr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~ 261 (502)
T PRK14326 182 KEKDRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMA 261 (502)
T ss_pred CcccCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHH
Confidence 446788899888888888889999988764332 22 24667777776544543355543 33334 56788888
Q ss_pred HcC--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEE-ecCCCHhHHHHHHHHHhhCCCe-
Q 022377 82 ESG--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVV-MRGFNDDEICDFVELTRDRPIN- 155 (298)
Q Consensus 82 ~~~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi-~~~~n~~~i~~i~~~~~~~g~~- 155 (298)
+++ ...+.+.+++.+++.-+.++++.+.+.+.+.++.+++. ++ .+...+++ .||++.+++.+.++++.+++++
T Consensus 262 ~~g~~~~~l~lglQSgsd~iLk~m~R~~t~~~~~~~v~~lr~~~~~i-~i~~~~IvGfPgET~edf~~Tl~~i~~~~~~~ 340 (502)
T PRK14326 262 ETPNVCPQLHMPLQSGSDRVLRAMRRSYRSERFLGILEKVRAAMPDA-AITTDIIVGFPGETEEDFQATLDVVREARFSS 340 (502)
T ss_pred hcCCcCCcEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCC-eEEEEEEEECCCCCHHHHHHHHHHHHHcCCCE
Confidence 876 78899999999999999998888899999999999996 45 45554433 3889999999999999998875
Q ss_pred eEEEeeecCCCCCCc
Q 022377 156 IRFIEFMPFDGNVWN 170 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~ 170 (298)
+.++.|.|..++...
T Consensus 341 ~~~f~~sp~pGT~~~ 355 (502)
T PRK14326 341 AFTFQYSKRPGTPAA 355 (502)
T ss_pred EEEEeecCCCCChHH
Confidence 455567887766543
No 136
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.45 E-value=5.3e-05 Score=71.01 Aligned_cols=158 Identities=13% Similarity=0.153 Sum_probs=116.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc--------ccHHHHHHHHhccCCCCcEEEE-eCccch-HhhHHH
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR--------KDIEEACFHLSKLKGLKTLAMT-TNGLTL-ARKLPK 79 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~--------~~~~~ii~~~~~~~~~~~v~i~-TNG~ll-~~~~~~ 79 (298)
++-...+++++.+=++.+.+.|++.|.|+|..-..+ ..+.++++.+.+..++..+.+. .+...+ ++.++.
T Consensus 172 G~~rsr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~~~g~~~ir~~~~~p~~i~~ell~~ 251 (446)
T PRK14337 172 GRQKSRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAALPGLERLRFTTPHPKDIAPEVIEA 251 (446)
T ss_pred CCCeeCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHhcCCCcEEEEccCCcccCCHHHHHH
Confidence 344678899988888888888999999988543221 2477888877764454335553 344334 567777
Q ss_pred HHHc--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCC
Q 022377 80 LKES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNC-VVMRGFNDDEICDFVELTRDRPI 154 (298)
Q Consensus 80 l~~~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~ 154 (298)
+.+. ++..+.+.+++.+++.-+.+++..+.+...+.++.+++. ++ .+...+ +-.||++.+++.+.++++.++++
T Consensus 252 l~~~~~~~~~l~iglQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~~~i-~i~~d~IvG~PgET~ed~~~tl~~l~~~~~ 330 (446)
T PRK14337 252 FGELPNLCPRLHLPLQSGSDRILKAMGRKYDMARYLDIVTDLRAARPDI-ALTTDLIVGFPGETEEDFEQTLEAMRTVGF 330 (446)
T ss_pred HHhCCcccCeEEECCCCCCHHHHHhCCCCCCHHHHHHHHHHHHHhCCCC-eEEEeEEEECCCCCHHHHHHHHHHHHhcCC
Confidence 8773 478999999999999998888877899999999999998 34 444443 33388999999999999999988
Q ss_pred e-eEEEeeecCCCCC
Q 022377 155 N-IRFIEFMPFDGNV 168 (298)
Q Consensus 155 ~-~~~~~~~p~~~~~ 168 (298)
+ +..+.|.|..++.
T Consensus 331 ~~~~~f~ysp~pgT~ 345 (446)
T PRK14337 331 ASSFSFCYSDRPGTR 345 (446)
T ss_pred CeeEEEecCCCCCCc
Confidence 5 3445677776554
No 137
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=98.44 E-value=1.7e-05 Score=71.82 Aligned_cols=173 Identities=20% Similarity=0.252 Sum_probs=107.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCccccHH-HHHHHHhc-cCCCCcEEEEeCc--------c--chHhhH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVRKDIE-EACFHLSK-LKGLKTLAMTTNG--------L--TLARKL 77 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~~~~~-~ii~~~~~-~~~~~~v~i~TNG--------~--ll~~~~ 77 (298)
+...||.|++.+.++++.+.|+..|.|+||| |-+..++. ++++.+++ ..++. +.-.|++ . ...|.+
T Consensus 86 ~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~y~~~~~~~ik~~~p~~~-i~a~s~~ei~~~~~~~~~s~~E~l 164 (370)
T COG1060 86 KAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLEYYEELFRTIKEEFPDLH-IHALSAGEILFLAREGGLSYEEVL 164 (370)
T ss_pred cccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchHHHHHHHHHHHHhCcchh-hcccCHHHhHHHHhccCCCHHHHH
Confidence 4458999999999999999999999999999 88887754 88898887 23332 3333433 2 224679
Q ss_pred HHHHHcCCCeEEEecCCCCHHhhhhh-cC-CCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH----hh
Q 022377 78 PKLKESGLTSVNISLDTLVPAKFEFL-TR-RKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT----RD 151 (298)
Q Consensus 78 ~~l~~~~~~~v~iSldg~~~~~~~~i-r~-~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~----~~ 151 (298)
++|+++|++.+...---.-.+.++++ .+ +.+++.-++.++.+.+.|+ +....+++.-+.+.++..+-+..+ .+
T Consensus 165 ~~Lk~aGldsmpg~~aeil~e~vr~~~~p~K~~~~~wle~~~~Ah~lGI-~~tatml~Gh~E~~ed~~~hl~~ir~lQ~~ 243 (370)
T COG1060 165 KRLKEAGLDSMPGGGAEILSEEVRKIHCPPKKSPEEWLEIHERAHRLGI-PTTATMLLGHVETREDRIDHLEHIRDLQDE 243 (370)
T ss_pred HHHHHcCCCcCcCcceeechHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-CccceeEEEecCCHHHHHHHHHHHHHHHHH
Confidence 99999999955444333223333232 22 2359999999999999999 554444444345665543333333 33
Q ss_pred CCC--eeEEEeeecCCCC-CCcccCCCCHHHHHHHHH
Q 022377 152 RPI--NIRFIEFMPFDGN-VWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 152 ~g~--~~~~~~~~p~~~~-~~~~~~~~~~~e~~~~i~ 185 (298)
.|. .+....|.|.... .-......+..+.+..++
T Consensus 244 ~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iA 280 (370)
T COG1060 244 TGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIA 280 (370)
T ss_pred hCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHH
Confidence 443 2333455554333 111222345566655543
No 138
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=98.44 E-value=5.5e-07 Score=71.83 Aligned_cols=81 Identities=11% Similarity=0.147 Sum_probs=55.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCC--CEEEEcCCccCcccc---HHHHHHHHhccC-CCCcEEEEeCccchHhhHHHHHHcCC
Q 022377 12 PQLLSLNEILRLAYLFVTSGV--DKIRLTGGEPTVRKD---IEEACFHLSKLK-GLKTLAMTTNGLTLARKLPKLKESGL 85 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~--~~v~~tGGEPll~~~---~~~ii~~~~~~~-~~~~v~i~TNG~ll~~~~~~l~~~~~ 85 (298)
+..++.+.+.++++.+...+. ..|+|+|||||++.+ +.++++++++.. +.. + +.+||+.+++.... ....+
T Consensus 44 g~~~~~~~~~~il~~~~~~~~~~~gvt~sGGEPl~~~~~~~l~~l~~~~k~~~~~~~-i-~~~tGy~~eel~~~-~~~~l 120 (154)
T PRK11121 44 GHPFTKEMEDQIIADLNDTRIKRQGLSLSGGDPLHPQNVPDILKLVQRVKAECPGKD-I-WVWTGYKLDELNAA-QRQVV 120 (154)
T ss_pred CcccCHHHHHHHHHHHHHhCCCCCcEEEECCCccchhhHHHHHHHHHHHHHHCCCCC-E-EEecCCCHHHHHHH-HHHHH
Confidence 345787888888888776654 689999999999663 447777776632 443 5 56899998764322 22235
Q ss_pred CeEEEecCCC
Q 022377 86 TSVNISLDTL 95 (298)
Q Consensus 86 ~~v~iSldg~ 95 (298)
+.+.|-+||.
T Consensus 121 ~~~DvlvDG~ 130 (154)
T PRK11121 121 DLIDVLVDGK 130 (154)
T ss_pred hhCCEEEech
Confidence 5667888884
No 139
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.40 E-value=1.3e-05 Score=79.92 Aligned_cols=171 Identities=19% Similarity=0.191 Sum_probs=121.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcc----------------cc-HHHHHHHHhccCCCCcEEEEeCccc
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR----------------KD-IEEACFHLSKLKGLKTLAMTTNGLT 72 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~----------------~~-~~~ii~~~~~~~~~~~v~i~TNG~l 72 (298)
+...|+.||+.+.++++.+.|+..+.|+||+ |-+. .+ +.++++.+++..++. ..+ +=|.+
T Consensus 98 ~~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~-p~i-~~G~l 175 (843)
T PRK09234 98 EAAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLL-PHL-NPGVM 175 (843)
T ss_pred ccccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcCCC-cee-eeCCC
Confidence 3456999999999999999999999999998 6543 13 447777777644653 433 33555
Q ss_pred hHhhHHHHHHcCCCeEEEecCCCCHHhhhh------hcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHH
Q 022377 73 LARKLPKLKESGLTSVNISLDTLVPAKFEF------LTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFV 146 (298)
Q Consensus 73 l~~~~~~l~~~~~~~v~iSldg~~~~~~~~------ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~ 146 (298)
..+.+..|++.+++ ..+++....+..|.. +...+.+..-++.++.+.+.|+ ++...+.+--|++.++..+.+
T Consensus 176 s~~E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~~RL~ti~~A~~lGi-~~tsG~L~GiGEt~edRve~L 253 (843)
T PRK09234 176 SWSELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPAVRLRVLEDAGRLSV-PFTTGILIGIGETLAERAESL 253 (843)
T ss_pred CHHHHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHcCC-CccceEEEECCCCHHHHHHHH
Confidence 57889999999887 677777755555532 1223347777999999999999 888777777788888877777
Q ss_pred HHHhhC-----CC-eeEEEeeecCCCCCCcccCCCCHHHHHHHHH
Q 022377 147 ELTRDR-----PI-NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVV 185 (298)
Q Consensus 147 ~~~~~~-----g~-~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~ 185 (298)
..++++ |+ .+-.+.|+|..++........+.++.++.++
T Consensus 254 ~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iA 298 (843)
T PRK09234 254 FAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIA 298 (843)
T ss_pred HHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHH
Confidence 777765 34 3445577777666554445577777766543
No 140
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=98.37 E-value=0.00011 Score=69.37 Aligned_cols=159 Identities=9% Similarity=0.118 Sum_probs=114.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccC------------ccccHHHHHHHHhccC-CCCcEEEEe-Cccch-Hh
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT------------VRKDIEEACFHLSKLK-GLKTLAMTT-NGLTL-AR 75 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl------------l~~~~~~ii~~~~~~~-~~~~v~i~T-NG~ll-~~ 75 (298)
+-...+++++.+-++.+.+.|++.|.|+|..-. ....+.++++.+.+.. +. .+.+.+ +...+ ++
T Consensus 193 ~~rsrs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~~~~-~ir~~~~~p~~l~~e 271 (467)
T PRK14329 193 RERSRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAVPDM-RIRFSTSHPKDMTDD 271 (467)
T ss_pred CcccCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcCCCc-EEEEecCCcccCCHH
Confidence 346678899888888888889888988763211 0124778888776532 33 355543 34344 56
Q ss_pred hHHHHHHc--CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCC-CEEEEEE-EecCCCHhHHHHHHHHHhh
Q 022377 76 KLPKLKES--GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYN-PVKVNCV-VMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 76 ~~~~l~~~--~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~-~v~i~~v-i~~~~n~~~i~~i~~~~~~ 151 (298)
.++.+.++ ++..+.+.+.+.+++.-+.+++..+.+..++.++.+++.+.. .+...++ -.||++.+++.+.++++.+
T Consensus 272 ll~~m~~~~~g~~~i~iglQSgsd~vLk~m~R~~t~~~~~~~i~~ir~~~~~~~i~~d~IvGfPgET~edf~~tl~~i~~ 351 (467)
T PRK14329 272 VLEVMAKYDNICKHIHLPVQSGSDRILKLMNRKYTREWYLDRIDAIRRIIPDCGISTDMIAGFPTETEEDHQDTLSLMEE 351 (467)
T ss_pred HHHHHHhCCCCCCeEEeCCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCEEEEeEEEeCCCCCHHHHHHHHHHHHh
Confidence 78888776 689999999999999998988877888899999999987430 3333333 3388999999999999999
Q ss_pred CCCe-eEEEeeecCCCCCCc
Q 022377 152 RPIN-IRFIEFMPFDGNVWN 170 (298)
Q Consensus 152 ~g~~-~~~~~~~p~~~~~~~ 170 (298)
++.+ +.+..|.|..++...
T Consensus 352 l~~~~~~v~~~sp~pGT~~~ 371 (467)
T PRK14329 352 VGYDFAFMFKYSERPGTYAA 371 (467)
T ss_pred hCCCeEeeeEecCCCCChhh
Confidence 8874 455677887766543
No 141
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=98.36 E-value=8.1e-05 Score=66.40 Aligned_cols=153 Identities=12% Similarity=0.078 Sum_probs=109.6
Q ss_pred CCCHHHHHHHHHHHHh-CCCC----EE-EEcCC---ccCccc-c-HHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHH
Q 022377 14 LLSLNEILRLAYLFVT-SGVD----KI-RLTGG---EPTVRK-D-IEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLK 81 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~-~~~~----~v-~~tGG---EPll~~-~-~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~ 81 (298)
..+.+.+.+-++.+.+ .+.. .+ .|++| .|..-+ + +.++++.+++...+..+++.|+.-.+ ++.++.++
T Consensus 45 ~~s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~ 124 (313)
T TIGR01210 45 EVTEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELR 124 (313)
T ss_pred CCChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHH
Confidence 4588887776666554 2322 22 36666 666544 3 55888888774325458888988766 67899999
Q ss_pred HcCCC-eEEEecCCCCHHhhh-hhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-cC----CCHhHHHHHHHHHhhCCC
Q 022377 82 ESGLT-SVNISLDTLVPAKFE-FLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-RG----FNDDEICDFVELTRDRPI 154 (298)
Q Consensus 82 ~~~~~-~v~iSldg~~~~~~~-~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-~~----~n~~~i~~i~~~~~~~g~ 154 (298)
++|+. .|.+.+++.+++.-+ .++++.+.+.++++++.++++|+ .+...+++- |+ ++.+++.+.++++..++-
T Consensus 125 ~aG~~~~v~iG~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi-~v~~~~i~G~P~~se~ea~ed~~~ti~~~~~l~~ 203 (313)
T TIGR01210 125 KIGVNVEVAVGLETANDRIREKSINKGSTFEDFIRAAELARKYGA-GVKAYLLFKPPFLSEKEAIADMISSIRKCIPVTD 203 (313)
T ss_pred HcCCCEEEEEecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCC-cEEEEEEecCCCCChhhhHHHHHHHHHHHHhcCC
Confidence 99998 799999999999884 67777789999999999999999 787777665 32 234556667788877764
Q ss_pred eeEEEeeecCCCC
Q 022377 155 NIRFIEFMPFDGN 167 (298)
Q Consensus 155 ~~~~~~~~p~~~~ 167 (298)
.+++..+.+..++
T Consensus 204 ~vs~~~l~v~~gT 216 (313)
T TIGR01210 204 TVSINPTNVQKGT 216 (313)
T ss_pred cEEEECCEEeCCC
Confidence 4566666655443
No 142
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.31 E-value=0.00011 Score=67.65 Aligned_cols=159 Identities=16% Similarity=0.281 Sum_probs=124.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC------CccCc--cccHHHHHHHHhccCCCCcEEEEeC-ccch-HhhHH
Q 022377 9 TPKPQLLSLNEILRLAYLFVTSGVDKIRLTG------GEPTV--RKDIEEACFHLSKLKGLKTLAMTTN-GLTL-ARKLP 78 (298)
Q Consensus 9 ~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tG------GEPll--~~~~~~ii~~~~~~~~~~~v~i~TN-G~ll-~~~~~ 78 (298)
+++....+++++.+=++.+.+.|++.|.|+| |--+- .+.|.++++.+.+..|+.++.++|- ..-+ ++.++
T Consensus 167 RG~~rSr~~e~Il~ev~~Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~I~G~~riR~~~~~P~~~~d~lI~ 246 (437)
T COG0621 167 RGKERSRPPEDILKEVKRLVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSKIPGIERIRFGSSHPLEFTDDLIE 246 (437)
T ss_pred CCCccCCCHHHHHHHHHHHHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhcCCCceEEEEecCCchhcCHHHHH
Confidence 4456678999999999999999999999987 55555 4678899999988767666776543 4334 45666
Q ss_pred HHHHc-C-CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE---EEecCCCHhHHHHHHHHHhhCC
Q 022377 79 KLKES-G-LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC---VVMRGFNDDEICDFVELTRDRP 153 (298)
Q Consensus 79 ~l~~~-~-~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~---vi~~~~n~~~i~~i~~~~~~~g 153 (298)
.+.+. . +.++.+++++.++..-..+++..+-+..++-++.+++.-- .+.+.+ |-.||++++++++.++++.+.+
T Consensus 247 ~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~yt~e~~~~~i~k~R~~~P-d~~i~tDiIVGFPgETeedFe~tl~lv~e~~ 325 (437)
T COG0621 247 AIAETPKVCPHLHLPVQSGSDRILKRMKRGYTVEEYLEIIEKLRAARP-DIAISTDIIVGFPGETEEDFEETLDLVEEVR 325 (437)
T ss_pred HHhcCCcccccccCccccCCHHHHHHhCCCcCHHHHHHHHHHHHHhCC-CceEeccEEEECCCCCHHHHHHHHHHHHHhC
Confidence 66663 2 5679999999999999999998888999999999998744 666765 5568999999999999999988
Q ss_pred Ce-eEEEeeecCCCCC
Q 022377 154 IN-IRFIEFMPFDGNV 168 (298)
Q Consensus 154 ~~-~~~~~~~p~~~~~ 168 (298)
.+ +..+.|.|-.+++
T Consensus 326 fd~~~~F~YSpRpGTp 341 (437)
T COG0621 326 FDRLHVFKYSPRPGTP 341 (437)
T ss_pred CCEEeeeecCCCCCCc
Confidence 74 4556777765543
No 143
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2.4e-06 Score=71.73 Aligned_cols=69 Identities=28% Similarity=0.355 Sum_probs=52.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhh---HHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARK---LPKLKE 82 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~---~~~l~~ 82 (298)
....++.+++.+.+.... .+...|+||||||++++++..+++.+++. |++ +.+.|||++-... ++.+..
T Consensus 52 ~~~~~~~~~I~~~i~~~~-~~~~~V~lTGGEP~~~~~l~~Ll~~l~~~-g~~-~~lETngti~~~~~~~~d~l~~ 123 (212)
T COG0602 52 PGTPMSADEILADIKSLG-YKARGVSLTGGEPLLQPNLLELLELLKRL-GFR-IALETNGTIPVWTGYTIDELTV 123 (212)
T ss_pred CCCccCHHHHHHHHHhcC-CCcceEEEeCCcCCCcccHHHHHHHHHhC-Cce-EEecCCCCcccccccchHhHhc
Confidence 456788888766655432 34469999999999899999999999995 995 9999999876432 455444
No 144
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=98.24 E-value=0.00012 Score=62.27 Aligned_cols=169 Identities=19% Similarity=0.250 Sum_probs=129.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcC--CccCccc---cHHHHHHHHhccC-CCCcEEEEeCccch-HhhHHHHHH
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTG--GEPTVRK---DIEEACFHLSKLK-GLKTLAMTTNGLTL-ARKLPKLKE 82 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GEPll~~---~~~~ii~~~~~~~-~~~~v~i~TNG~ll-~~~~~~l~~ 82 (298)
++...++++|=.++.+..+.+|...|.+|+ -+-|-.. +|.+.++.+++.. +. .+.+.|--+.= ...++.+.+
T Consensus 92 g~P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~hfa~~i~~Ire~~P~t-~iEvL~PDF~G~~~al~~v~~ 170 (306)
T COG0320 92 GRPNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQHFAECIRAIRELNPQT-TIEVLTPDFRGNDDALEIVAD 170 (306)
T ss_pred CCCCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchHHHHHHHHHHHhhCCCc-eEEEeCccccCCHHHHHHHHh
Confidence 447889999999999999999999999986 4445443 4889999998852 45 36666654433 567999999
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcC--CCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEE-
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG--YNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFI- 159 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g--~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~- 159 (298)
++.+.++-.+.+. +..|..+|.+.+|++-++-++.+++.+ + ..+...++.-|++.+|+.+.++=+.+.|+++--+
T Consensus 171 ~~pdV~nHNvETV-prL~~~VRp~A~Y~~SL~~L~~~k~~~P~i-~TKSgiMlGLGEt~~Ev~e~m~DLr~~gvdilTiG 248 (306)
T COG0320 171 AGPDVFNHNVETV-PRLYPRVRPGATYERSLSLLERAKELGPDI-PTKSGLMVGLGETDEEVIEVMDDLRSAGVDILTIG 248 (306)
T ss_pred cCcchhhcccccc-hhcccccCCCCcHHHHHHHHHHHHHhCCCc-ccccceeeecCCcHHHHHHHHHHHHHcCCCEEEec
Confidence 9999999999996 788999998888999999999999987 5 5666777777899999999999999999986444
Q ss_pred eeecCCCCCCcccCCCCHHHHH
Q 022377 160 EFMPFDGNVWNVKKLVPYAEML 181 (298)
Q Consensus 160 ~~~p~~~~~~~~~~~~~~~e~~ 181 (298)
+|+-.......-+...+.+|+.
T Consensus 249 QYlqPS~~HlpV~ryv~PeeF~ 270 (306)
T COG0320 249 QYLQPSRKHLPVQRYVTPEEFD 270 (306)
T ss_pred cccCCccccCCceeccCHHHHH
Confidence 4543333323233445555543
No 145
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=98.19 E-value=4.2e-05 Score=69.99 Aligned_cols=97 Identities=12% Similarity=0.149 Sum_probs=85.3
Q ss_pred hHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH-hHHHHHHHHHhh
Q 022377 73 LARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND-DEICDFVELTRD 151 (298)
Q Consensus 73 l~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~-~~i~~i~~~~~~ 151 (298)
.++.++++.+.+++-++||+++.+|+.-.++.+...-.++++.++.|.++|+ .+..+.|+.||.|+ +++++.++.+.+
T Consensus 127 ~~~d~~RI~~~~lspl~iSVhat~p~lR~~ll~n~~a~~il~~l~~l~~~~I-~~h~qiVlcPGiNDg~~L~~Ti~dL~~ 205 (433)
T TIGR03279 127 PPAEWQRIEQLRLSPLYVSVHATEPSLRARLLKNPRAGLILEQLKWFQERRL-QLHAQVVVCPGINDGKHLERTLRDLAQ 205 (433)
T ss_pred CHHHHHHHHHcCCCCEEEEEecCCHHHHHHHhCCCCHHHHHHHHHHHHHcCC-eEEEEEEEcCCcCCHHHHHHHHHHHHh
Confidence 3678999999999999999999999998888887788999999999999999 99999999999998 579999998888
Q ss_pred CC----CeeEEEeeecCCCCCCc
Q 022377 152 RP----INIRFIEFMPFDGNVWN 170 (298)
Q Consensus 152 ~g----~~~~~~~~~p~~~~~~~ 170 (298)
++ -.+..+...|+|-+++.
T Consensus 206 ~~~~~~P~v~S~avVPVGlTk~R 228 (433)
T TIGR03279 206 FHDGDWPTVLSVAVVPVGLTRFR 228 (433)
T ss_pred hcccCCCceeEEEEEccccccCC
Confidence 73 35778889999866553
No 146
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=98.15 E-value=1.3e-05 Score=63.31 Aligned_cols=72 Identities=15% Similarity=0.085 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEE
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
..+|+.+++.+.|++... .+..|+||||| +.++++.++++++++. |+. +.+.||++. ++..+.+.+ .+|.+.
T Consensus 43 g~~lt~eel~~~I~~~~~-~~~gVt~SGGE-l~~~~l~~ll~~lk~~-Gl~-i~l~Tg~~~-~~~~~~il~-~iD~l~ 114 (147)
T TIGR02826 43 GTKLTPEYLTKTLDKYRS-LISCVLFLGGE-WNREALLSLLKIFKEK-GLK-TCLYTGLEP-KDIPLELVQ-HLDYLK 114 (147)
T ss_pred CcCCCHHHHHHHHHHhCC-CCCEEEEechh-cCHHHHHHHHHHHHHC-CCC-EEEECCCCC-HHHHHHHHH-hCCEEE
Confidence 457999999999887653 35799999999 7777799999999995 995 999999764 333344443 355443
No 147
>PRK09234 fbiC FO synthase; Reviewed
Probab=98.10 E-value=0.00019 Score=71.83 Aligned_cols=137 Identities=18% Similarity=0.235 Sum_probs=104.0
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcccc-HHHHHHHHhccC-CCCcEEEE----------eCccchHhhHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVRKD-IEEACFHLSKLK-GLKTLAMT----------TNGLTLARKLP 78 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~~~-~~~ii~~~~~~~-~~~~v~i~----------TNG~ll~~~~~ 78 (298)
...|+.|++.+.+.++.+.|+..|++.||+ |-+..+ +.++++.+++.. ++. +... +.|....+.+.
T Consensus 554 ~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~-i~afsp~Ei~~~a~~~Gl~~~e~l~ 632 (843)
T PRK09234 554 AYTLSLDEVADRAWEAWVAGATEVCMQGGIHPELPGTGYADLVRAVKARVPSMH-VHAFSPMEIVNGAARLGLSIREWLT 632 (843)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCee-EEecChHHHHHHHHHcCCCHHHHHH
Confidence 446999999999999999999999999997 544443 558889888742 453 4322 35766688999
Q ss_pred HHHHcCCCeEEEecCCCCHHhhh-----hhcC-CCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhC
Q 022377 79 KLKESGLTSVNISLDTLVPAKFE-----FLTR-RKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDR 152 (298)
Q Consensus 79 ~l~~~~~~~v~iSldg~~~~~~~-----~ir~-~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~ 152 (298)
+|+++|++.+. +..++.++ .+.. .-+.+.-++.++.+++.|+ ++...+++.-+++.++..+.+.+++++
T Consensus 633 ~LkeAGLds~p----gt~aeil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi-~~~stmm~G~~Et~edrv~hl~~LreL 707 (843)
T PRK09234 633 ALREAGLDTIP----GTAAEILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGL-RSSSTMMYGHVDTPRHWVAHLRVLRDI 707 (843)
T ss_pred HHHHhCcCccC----CCchhhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCC-CcccceEEcCCCCHHHHHHHHHHHHhc
Confidence 99999999664 43455444 3333 2346677899999999999 887777777778889999999999998
Q ss_pred CC
Q 022377 153 PI 154 (298)
Q Consensus 153 g~ 154 (298)
..
T Consensus 708 q~ 709 (843)
T PRK09234 708 QD 709 (843)
T ss_pred Cc
Confidence 76
No 148
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=98.09 E-value=0.00032 Score=64.32 Aligned_cols=147 Identities=20% Similarity=0.249 Sum_probs=111.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~ 81 (298)
+|+|.|.. +..++.++..++++.+.+.|+..|-+ |-|-+.++-.+.++.+.+. +.. ..+.+-+....+.++...
T Consensus 12 LRDG~Q~~--~~~~s~e~k~~ia~~L~~~GV~~IE~--G~p~~~~~~~e~i~~i~~~-~~~-~~i~~~~r~~~~di~~a~ 85 (378)
T PRK11858 12 LRDGEQTP--GVVFTNEEKLAIARMLDEIGVDQIEA--GFPAVSEDEKEAIKAIAKL-GLN-ASILALNRAVKSDIDASI 85 (378)
T ss_pred CCccCcCC--CCCCCHHHHHHHHHHHHHhCCCEEEE--eCCCcChHHHHHHHHHHhc-CCC-eEEEEEcccCHHHHHHHH
Confidence 56766665 56899999999999999999998886 5788888777888888773 664 666666655566788999
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
++|++.|.+++...+.....+++.. ..++.+.+.++.+++.|. .+.+.+.-....+.+.+.++++.+.+.|++
T Consensus 86 ~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~-~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~ 160 (378)
T PRK11858 86 DCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGL-YVSFSAEDASRTDLDFLIEFAKAAEEAGAD 160 (378)
T ss_pred hCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEeccCCCCCHHHHHHHHHHHHhCCCC
Confidence 9999999999877443333344432 237888889999999999 887776433336778899999999988875
No 149
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=98.03 E-value=0.00087 Score=58.24 Aligned_cols=174 Identities=18% Similarity=0.174 Sum_probs=114.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~ 81 (298)
+|+|.|.. +..++.++..++++.+.+.|+..|-+. =|-+.+.-.+.++.+.+. ... ..+..=.....+.++...
T Consensus 6 lRDG~Q~~--~~~~~~~~k~~i~~~L~~~Gv~~iE~g--~p~~~~~~~e~~~~l~~~-~~~-~~~~~~~r~~~~~v~~a~ 79 (259)
T cd07939 6 LRDGEQAP--GVAFSREEKLAIARALDEAGVDEIEVG--IPAMGEEEREAIRAIVAL-GLP-ARLIVWCRAVKEDIEAAL 79 (259)
T ss_pred CCCCCCCC--CCCCCHHHHHHHHHHHHHcCCCEEEEe--cCCCCHHHHHHHHHHHhc-CCC-CEEEEeccCCHHHHHHHH
Confidence 67887776 568999999999999999999988884 355555445677777662 221 223221212355688888
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFI 159 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~ 159 (298)
+.|++.|.+++..-+......++.. ..++.+.+.++.+++.|+ .+.+++......+.+.+.++++.+.+.|++ .+
T Consensus 80 ~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~--~i 156 (259)
T cd07939 80 RCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGL-FVSVGAEDASRADPDFLIEFAEVAQEAGAD--RL 156 (259)
T ss_pred hCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEeeccCCCCCHHHHHHHHHHHHHCCCC--EE
Confidence 9999999998865322222333322 237788889999999999 888887666546778899999988888874 23
Q ss_pred eeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 160 EFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 160 ~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
.+....+. . .+....++...+.+.+
T Consensus 157 ~l~DT~G~-~---~P~~v~~lv~~l~~~~ 181 (259)
T cd07939 157 RFADTVGI-L---DPFTTYELIRRLRAAT 181 (259)
T ss_pred EeCCCCCC-C---CHHHHHHHHHHHHHhc
Confidence 33332222 1 1123455566666655
No 150
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=98.02 E-value=0.0021 Score=53.16 Aligned_cols=168 Identities=17% Similarity=0.176 Sum_probs=115.2
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcc---ccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEE
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLTGGE-PTVR---KDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 90 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~---~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~i 90 (298)
.|.+++.+-+.++.+.|...+.++||- |-.. .++.+.++++++..++. +.. --|..-++.++++++++++.+.+
T Consensus 39 vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~l~-ina-HvGfvdE~~~eklk~~~vdvvsL 116 (275)
T COG1856 39 VTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTGLL-INA-HVGFVDESDLEKLKEELVDVVSL 116 (275)
T ss_pred cchHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHHhhCeE-EEE-EeeeccHHHHHHHHHhcCcEEEE
Confidence 345667777778888999999999885 3333 23667778887754553 322 33544466899999999999988
Q ss_pred ecCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCEEEEEEEe--cCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCC
Q 022377 91 SLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNCVVM--RGFNDDEICDFVELTRDRPI-NIRFIEFMPFDG 166 (298)
Q Consensus 91 Sldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~vi~--~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~ 166 (298)
.+=| +.++-..+.+- .+-+..++.++.|.+.|+ ++.-.+++. .|.-..|+.++ +.+.+... .+....++|..+
T Consensus 117 Dfvg-Dn~vIk~vy~l~ksv~dyl~~l~~L~e~~i-rvvpHitiGL~~gki~~e~kaI-diL~~~~~DalVl~vliPtpG 193 (275)
T COG1856 117 DFVG-DNDVIKRVYKLPKSVEDYLRSLLLLKENGI-RVVPHITIGLDFGKIHGEFKAI-DILVNYEPDALVLVVLIPTPG 193 (275)
T ss_pred eecC-ChHHHHHHHcCCccHHHHHHHHHHHHHcCc-eeceeEEEEeccCcccchHHHH-HHHhcCCCCeEEEEEEecCCc
Confidence 8888 45555566554 358899999999999999 765555443 33233455444 44444344 356778999988
Q ss_pred CCCcccCCCCHHHHHHHHHHh
Q 022377 167 NVWNVKKLVPYAEMLDTVVKK 187 (298)
Q Consensus 167 ~~~~~~~~~~~~e~~~~i~~~ 187 (298)
+.+......+.+|....+...
T Consensus 194 tkm~~~~pp~~eE~i~v~~~A 214 (275)
T COG1856 194 TKMGNSPPPPVEEAIKVVKYA 214 (275)
T ss_pred hhccCCCCcCHHHHHHHHHHH
Confidence 888777777888877666543
No 151
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=98.01 E-value=0.00054 Score=59.49 Aligned_cols=173 Identities=18% Similarity=0.163 Sum_probs=116.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~ 81 (298)
||+|.|.. +..+|.++..++++.+.+.|+..|-+.. |-..++..+.++.+.+. +.. ..+.+=+....+.++...
T Consensus 8 LRDG~Q~~--~~~~s~~~k~~i~~~L~~~Gv~~IEvG~--P~~~~~~~~~~~~l~~~-~~~-~~v~~~~r~~~~di~~a~ 81 (262)
T cd07948 8 LREGEQFA--NAFFDTEDKIEIAKALDAFGVDYIELTS--PAASPQSRADCEAIAKL-GLK-AKILTHIRCHMDDARIAV 81 (262)
T ss_pred CCCcCcCC--CCCCCHHHHHHHHHHHHHcCCCEEEEEC--CCCCHHHHHHHHHHHhC-CCC-CcEEEEecCCHHHHHHHH
Confidence 67877766 4789999999999999999999888865 88888877777777653 432 333332222356788889
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRF 158 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~ 158 (298)
+.|++.|.+.+-. ++.....-.+. ...+.+.+.++.+++.|+ .+.+...-.-+.+.+.+.++++.+.+.|++ .
T Consensus 82 ~~g~~~i~i~~~~-S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~-~v~~~~eda~r~~~~~l~~~~~~~~~~g~~--~ 157 (262)
T cd07948 82 ETGVDGVDLVFGT-SPFLREASHGKSITEIIESAVEVIEFVKSKGI-EVRFSSEDSFRSDLVDLLRVYRAVDKLGVN--R 157 (262)
T ss_pred HcCcCEEEEEEec-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEEeeCCCCHHHHHHHHHHHHHcCCC--E
Confidence 9999999998866 33322222221 237778888899999999 888776433336778899999999988875 2
Q ss_pred EeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 159 IEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 159 ~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+.+....+. . .+....++...+++.+
T Consensus 158 i~l~Dt~G~-~---~P~~v~~~~~~~~~~~ 183 (262)
T cd07948 158 VGIADTVGI-A---TPRQVYELVRTLRGVV 183 (262)
T ss_pred EEECCcCCC-C---CHHHHHHHHHHHHHhc
Confidence 333333221 1 1123455666666655
No 152
>KOG2900 consensus Biotin synthase [Coenzyme transport and metabolism]
Probab=98.00 E-value=4.7e-05 Score=63.81 Aligned_cols=219 Identities=17% Similarity=0.246 Sum_probs=137.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEc------CCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcC
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLT------GGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG 84 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~t------GGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~ 84 (298)
..+.|..+++.+-.+++++.|-...+.. -|--.....+.++++.++. .|+. + +.|=|.+-.+...+|+++|
T Consensus 113 A~klmk~DeVi~~Ak~AK~~GSTRFCmGaAWRD~~GRk~~fk~IlE~ikevr~-MgmE-v-CvTLGMv~~qQAkeLKdAG 189 (380)
T KOG2900|consen 113 AEKLMKVDEVIKEAKEAKRNGSTRFCMGAAWRDMKGRKSAFKRILEMIKEVRD-MGME-V-CVTLGMVDQQQAKELKDAG 189 (380)
T ss_pred HHHHhhHHHHHHHHHHHHhcCCceeecchhhhhhccchhHHHHHHHHHHHHHc-CCce-e-eeeeccccHHHHHHHHhcc
Confidence 3456888888888888888774444332 1333333445566666666 3774 4 5588866677899999999
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCC---CeeEEEee
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP---INIRFIEF 161 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g---~~~~~~~~ 161 (298)
+...+-.||. ..|.|.++--..+|+..++.|+.++++|+ .+...-++.-|+..++-.-++.-+..+. -.+-++.+
T Consensus 190 LTAYNHNlDT-SREyYskvItTRtYDdRL~Ti~nvr~aGi-kvCsGGIlGLGE~e~DriGlihtLatmp~HPESvPiN~L 267 (380)
T KOG2900|consen 190 LTAYNHNLDT-SREYYSKVITTRTYDDRLQTIKNVREAGI-KVCSGGILGLGESEDDRIGLIHTLATMPPHPESVPINRL 267 (380)
T ss_pred ceecccCccc-hhhhhcccceecchHHHHHHHHHHHHhcc-eecccccccccccccceeeeeeeeccCCCCCcccccceE
Confidence 9999999999 57888887777789999999999999999 7776666665666555434444333322 23455566
Q ss_pred ecCCCCCCcc--cCCCCHHHHHHHHHHhCCCceecCCCCCCCcceEEeCCCCeeEEEEeCCCcccc--CCCCeEEEeccc
Q 022377 162 MPFDGNVWNV--KKLVPYAEMLDTVVKKFPGLRRMQDHPTETAKNFKIDGHHGNVSFITSMTEHFC--AGCNRLRLLADG 237 (298)
Q Consensus 162 ~p~~~~~~~~--~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C--~~~~~~~I~~dG 237 (298)
.+..+++... ...+...++++.|.... +.- +....++.. ++..+ +......| +||+++.-...-
T Consensus 268 vaikGTP~~d~~~k~l~i~e~lR~IaTAR--IvM-------PKaiiRlaA--GR~t~-sesEQalcFmAGaNsiFTGeKm 335 (380)
T KOG2900|consen 268 VAIKGTPMADEKSKKLQIDEILRTIATAR--IVM-------PKAIIRLAA--GRYTM-SESEQALCFMAGANSIFTGEKM 335 (380)
T ss_pred EecCCcccchhhcccccHHHHHHHHhhhh--eec-------hHHHHHHhc--ccccc-chhHHHHHHHhCCccceechhh
Confidence 6766554333 55677888887776543 000 000000000 11111 01112346 899988766665
Q ss_pred ceeecCCCC
Q 022377 238 NFKVCLFGP 246 (298)
Q Consensus 238 ~v~pC~~~~ 246 (298)
--.||-.++
T Consensus 336 LTTp~n~wD 344 (380)
T KOG2900|consen 336 LTTPCNGWD 344 (380)
T ss_pred hcCCCCCcc
Confidence 667887554
No 153
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=97.98 E-value=0.00073 Score=61.61 Aligned_cols=146 Identities=20% Similarity=0.195 Sum_probs=108.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~ 81 (298)
+|+|.|.. +..++.++..++++.+.+.|+..|-+ |-|...++-.+.++.+.+. +.. ..+.+-+....+.++...
T Consensus 8 LRDG~Q~~--~~~~s~~~k~~ia~~L~~~Gv~~IEv--G~p~~~~~~~e~i~~i~~~-~~~-~~v~~~~r~~~~di~~a~ 81 (363)
T TIGR02090 8 LRDGEQTP--GVSLTVEQKVEIARKLDELGVDVIEA--GFPIASEGEFEAIKKISQE-GLN-AEICSLARALKKDIDKAI 81 (363)
T ss_pred CCCcCCCC--CCCCCHHHHHHHHHHHHHcCCCEEEE--eCCCCChHHHHHHHHHHhc-CCC-cEEEEEcccCHHHHHHHH
Confidence 57777774 57899999999999999999998886 5677777767788887764 443 445444433467789999
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCe
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNC-VVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
++|++.|.+++...+......++.. ..++.+.+.++.+++.|. .+.+.. ..++ .+.+.+.++++.+.+.|++
T Consensus 82 ~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~-~v~~~~eda~r-~~~~~l~~~~~~~~~~g~~ 156 (363)
T TIGR02090 82 DCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGL-IVEFSAEDATR-TDIDFLIKVFKRAEEAGAD 156 (363)
T ss_pred HcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-EEEEEEeecCC-CCHHHHHHHHHHHHhCCCC
Confidence 9999999999876432222233332 238889999999999999 887776 3344 6788899999999888875
No 154
>PF13186 SPASM: Iron-sulfur cluster-binding domain
Probab=97.87 E-value=1e-05 Score=54.14 Aligned_cols=46 Identities=30% Similarity=0.464 Sum_probs=32.0
Q ss_pred c-CCCCeEEEecccceeecCC-CCCCCCcchHhhcCCCHHHHHHHHHHHHHhhh
Q 022377 225 C-AGCNRLRLLADGNFKVCLF-GPSEVSLRDPLRQNASDDELREIIGAAVKRKK 276 (298)
Q Consensus 225 C-~~~~~~~I~~dG~v~pC~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (298)
| ++...+.|++||+|+||.. ....+.+++ + +++|.+||.....++-
T Consensus 1 C~~~~~~~~I~~dG~v~pC~~~~~~~~~~Gn-----i-~~~l~eiw~s~~~~~~ 48 (64)
T PF13186_consen 1 CGAGWNSLYIDPDGDVYPCCHDYDPEFKIGN-----I-EDSLEEIWNSPKFREF 48 (64)
T ss_pred CCCcCeEEEEeeCccEEeCCCCCCCCeEEee-----c-CCCHHHHHCCHHHHHH
Confidence 5 5667899999999999953 344566644 4 4579999965444433
No 155
>COG1533 SplB DNA repair photolyase [DNA replication, recombination, and repair]
Probab=97.68 E-value=0.0051 Score=54.28 Aligned_cols=145 Identities=22% Similarity=0.313 Sum_probs=101.1
Q ss_pred CCHHH-HHHHHH-HHHhCCC--CEEEEc-CCccCcccc----HH-HHHHHHhccCCCCcEEEEeCccchHhhHHHHH---
Q 022377 15 LSLNE-ILRLAY-LFVTSGV--DKIRLT-GGEPTVRKD----IE-EACFHLSKLKGLKTLAMTTNGLTLARKLPKLK--- 81 (298)
Q Consensus 15 l~~e~-~~~~i~-~~~~~~~--~~v~~t-GGEPll~~~----~~-~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~--- 81 (298)
+..++ +..+++ ++.+.+. ..|.++ -=+|....+ +. .+++.+.+ .+.. +.|.|-..+..+.++.|.
T Consensus 62 v~vk~n~~e~l~~el~~~~~k~~~i~is~~TDpyqp~E~~~~ltR~ilei~~~-~~~~-v~I~TKS~lv~RDld~l~~~~ 139 (297)
T COG1533 62 VNVKENLLELLERELRKPGPKRTVIAISSVTDPYQPIEKEYRLTRKILEILLK-YGFP-VSIVTKSALVLRDLDLLLELA 139 (297)
T ss_pred eeechhHHHHHHHHHhhccCCceEEEEecCCCCCCcchHHHHHHHHHHHHHHH-cCCc-EEEEECCcchhhhHHHHHhhh
Confidence 34444 555444 3332222 345554 378998854 33 55555555 4885 999999988765555554
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCeeEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPVKVNC-VVMRGFNDDEICDFVELTRDRPINIRFI 159 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~~~~~ 159 (298)
..+...|.+|+-+.+++....+-.. ++.+.-+++++.|.++|+ ++.+.+ -+.|+.|+++++++++-+.+.|+.....
T Consensus 140 ~~~~v~V~~Sitt~d~~l~k~~EP~apsp~~Ri~al~~l~eaGi-~~~v~v~PIiP~~~d~e~e~~l~~~~~ag~~~v~~ 218 (297)
T COG1533 140 ERGKVRVAVSITTLDEELAKILEPRAPSPEERLEALKELSEAGI-PVGLFVAPIIPGLNDEELERILEAAAEAGARVVVY 218 (297)
T ss_pred hccceEEEEEeecCcHHHHHhcCCCCcCHHHHHHHHHHHHHCCC-eEEEEEecccCCCChHHHHHHHHHHHHcCCCeeEe
Confidence 5555669999999876666666543 459999999999999999 888876 7778889999999999999888754333
Q ss_pred eee
Q 022377 160 EFM 162 (298)
Q Consensus 160 ~~~ 162 (298)
.+.
T Consensus 219 ~~l 221 (297)
T COG1533 219 GTL 221 (297)
T ss_pred eee
Confidence 333
No 156
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=97.67 E-value=0.0096 Score=51.82 Aligned_cols=165 Identities=16% Similarity=0.174 Sum_probs=108.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-----CCc-----cCccccHHHHHHHHhc-cCCCCcEE-EEeC
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLT-----GGE-----PTVRKDIEEACFHLSK-LKGLKTLA-MTTN 69 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~t-----GGE-----Pll~~~~~~ii~~~~~-~~~~~~v~-i~TN 69 (298)
+|+|.|. .+..++.++..++++.+.+.|+..|-+. ||. |.... -.+.++.+++ ..+.+ +. +..+
T Consensus 8 lRDG~Q~--~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~-~~e~i~~~~~~~~~~~-~~~~~~~ 83 (263)
T cd07943 8 LRDGMHA--VRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHT-DEEYLEAAAEALKQAK-LGVLLLP 83 (263)
T ss_pred CCcCccc--CCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCC-hHHHHHHHHHhccCCE-EEEEecC
Confidence 5788876 5778999999999999999999988876 221 33332 2344455533 23443 43 4445
Q ss_pred ccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH
Q 022377 70 GLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 70 G~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
+....+.++...+.+++.|.+.+.. ++ .+.+.+.++.+++.|+ .+.++..-....+.+.+.++++.+
T Consensus 84 ~~~~~~~i~~a~~~g~~~iri~~~~-s~-----------~~~~~~~i~~ak~~G~-~v~~~~~~~~~~~~~~~~~~~~~~ 150 (263)
T cd07943 84 GIGTVDDLKMAADLGVDVVRVATHC-TE-----------ADVSEQHIGAARKLGM-DVVGFLMMSHMASPEELAEQAKLM 150 (263)
T ss_pred CccCHHHHHHHHHcCCCEEEEEech-hh-----------HHHHHHHHHHHHHCCC-eEEEEEEeccCCCHHHHHHHHHHH
Confidence 5444567888889999999987644 21 2467889999999999 787776333226788899999999
Q ss_pred hhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 150 RDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 150 ~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
.+.|++. +.+....+. . .+....++.+.+++.++
T Consensus 151 ~~~G~d~--i~l~DT~G~-~---~P~~v~~lv~~l~~~~~ 184 (263)
T cd07943 151 ESYGADC--VYVTDSAGA-M---LPDDVRERVRALREALD 184 (263)
T ss_pred HHcCCCE--EEEcCCCCC-c---CHHHHHHHHHHHHHhCC
Confidence 9888853 333332221 1 12235566667776663
No 157
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=97.66 E-value=0.011 Score=51.78 Aligned_cols=175 Identities=21% Similarity=0.182 Sum_probs=110.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccC--CCCcEEEEe----Cccch--
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLK--GLKTLAMTT----NGLTL-- 73 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~--~~~~v~i~T----NG~ll-- 73 (298)
+|+|.|.. +..++.++..++++.+.+.|+..|-+ |=|..++.-.+.++.+.+.. +.. +.... .+...
T Consensus 6 LRDG~Q~~--~~~~s~e~k~~i~~~L~~~Gv~~IE~--G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~ 80 (273)
T cd07941 6 LRDGTQGE--GISFSVEDKLRIARKLDELGVDYIEG--GWPGSNPKDTEFFARAKKLKLKHAK-LAAFGSTRRAGVKAEE 80 (273)
T ss_pred CCCcCCCC--CCCCCHHHHHHHHHHHHHcCCCEEEe--cCCcCCHHHHHHHHHHHHcCCCCcE-EEEEecccccCCCccc
Confidence 57877776 67899999999999999999999988 44567777666677766531 221 22211 12111
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEe----cCCCHhHHHHHHH
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVM----RGFNDDEICDFVE 147 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~----~~~n~~~i~~i~~ 147 (298)
+..++...+.|++.|.+.+-..+......+... ..++.+.+.++.+++.|+ .+.++.+.. + .+.+.+.++++
T Consensus 81 ~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~-~v~~~~~~~~d~~~-~~~~~~~~~~~ 158 (273)
T cd07941 81 DPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGR-EVIFDAEHFFDGYK-ANPEYALATLK 158 (273)
T ss_pred hHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-eEEEeEEeccccCC-CCHHHHHHHHH
Confidence 235778889999999998766322222222221 248888899999999999 887754321 3 45666778888
Q ss_pred HHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 148 LTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 148 ~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
.+.+.|++ .+.+....+.. .+....++.+.+++.++
T Consensus 159 ~~~~~g~~--~i~l~DT~G~~----~P~~v~~lv~~l~~~~~ 194 (273)
T cd07941 159 AAAEAGAD--WLVLCDTNGGT----LPHEIAEIVKEVRERLP 194 (273)
T ss_pred HHHhCCCC--EEEEecCCCCC----CHHHHHHHHHHHHHhCC
Confidence 77887875 23333332221 12234556666666554
No 158
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=97.65 E-value=0.013 Score=52.91 Aligned_cols=173 Identities=16% Similarity=0.121 Sum_probs=109.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-CCccCccc---cHHHHHHHHhccCCCCcEEEEeCccchHhhH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLT-GGEPTVRK---DIEEACFHLSKLKGLKTLAMTTNGLTLARKL 77 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~t-GGEPll~~---~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~ 77 (298)
||+|.|.. +..++.|+-.++++.+.+.|+..|-.+ ..-|=.-| +..++++.+++..+.. +.... ...+.+
T Consensus 54 lRDG~Q~~--g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk~vPqmad~~ev~~~i~~~~~~~-~~~l~---~n~~di 127 (347)
T PLN02746 54 PRDGLQNE--KNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGAR-FPVLT---PNLKGF 127 (347)
T ss_pred CCccCcCC--CCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccccHHHHHHHHHhccCCc-eeEEc---CCHHHH
Confidence 67777765 468999999999999999999988775 22322222 4556677776543443 32221 235678
Q ss_pred HHHHHcCCCeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHcCCCCEEEEE--EE-----ecCCCHhHHHHHHH
Q 022377 78 PKLKESGLTSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVKVNC--VV-----MRGFNDDEICDFVE 147 (298)
Q Consensus 78 ~~l~~~~~~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~i~~--vi-----~~~~n~~~i~~i~~ 147 (298)
+...+++.+.|.+.+-. ++.+..+-.+. ..++.+.+.++.+++.|. .+...+ .+ .+ .+.+.+.++++
T Consensus 128 e~A~~~g~~~v~i~~s~-Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl-~v~~~is~~fg~p~~~r-~~~~~l~~~~~ 204 (347)
T PLN02746 128 EAAIAAGAKEVAVFASA-SESFSKSNINCSIEESLVRYREVALAAKKHSI-PVRGYVSCVVGCPIEGP-VPPSKVAYVAK 204 (347)
T ss_pred HHHHHcCcCEEEEEEec-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEEEeeecCCccCC-CCHHHHHHHHH
Confidence 88889999999999855 44433322222 126777778888889998 776443 22 22 35567888888
Q ss_pred HHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 148 LTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 148 ~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
-+.+.|++ .+.+...-+.. .+....++.+.+.+.++
T Consensus 205 ~~~~~Gad--~I~l~DT~G~a----~P~~v~~lv~~l~~~~~ 240 (347)
T PLN02746 205 ELYDMGCY--EISLGDTIGVG----TPGTVVPMLEAVMAVVP 240 (347)
T ss_pred HHHHcCCC--EEEecCCcCCc----CHHHHHHHHHHHHHhCC
Confidence 88888875 34444332221 12335566666666553
No 159
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=97.63 E-value=0.011 Score=51.60 Aligned_cols=173 Identities=16% Similarity=0.162 Sum_probs=112.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhc-cCCCCcEEEEeCccchHhhHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSK-LKGLKTLAMTTNGLTLARKLPKL 80 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~-~~~~~~v~i~TNG~ll~~~~~~l 80 (298)
||+|.|.. +..++.++..++++.+.+.|+..|-+.. |-.+++-.+.++.+.+ ..+.. +...+.+ ..+.++..
T Consensus 6 lRDG~Q~~--~~~~~~~~k~~i~~~L~~~Gv~~iEvg~--~~~~~~~~~~~~~l~~~~~~~~-~~~l~r~--~~~~v~~a 78 (268)
T cd07940 6 LRDGEQTP--GVSLTPEEKLEIARQLDELGVDVIEAGF--PAASPGDFEAVKRIAREVLNAE-ICGLARA--VKKDIDAA 78 (268)
T ss_pred CCccccCC--CCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCCCHHHHHHHHHHHHhCCCCE-EEEEccC--CHhhHHHH
Confidence 67888777 4589999999999999999999888742 3344443466666665 23442 4443333 14456777
Q ss_pred HHcC----CCeEEEecCCCCHHhh-hhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCC
Q 022377 81 KESG----LTSVNISLDTLVPAKF-EFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP 153 (298)
Q Consensus 81 ~~~~----~~~v~iSldg~~~~~~-~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g 153 (298)
.+++ ++.|.+.+-. ++... ..++.. ..++.+.+.++.+++.|+ .+.+++......+.+.+.++++.+.+.|
T Consensus 79 ~~~~~~~~~~~i~i~~~~-s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~G 156 (268)
T cd07940 79 AEALKPAKVDRIHTFIAT-SDIHLKYKLKKTREEVLERAVEAVEYAKSHGL-DVEFSAEDATRTDLDFLIEVVEAAIEAG 156 (268)
T ss_pred HHhCCCCCCCEEEEEecC-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEeeecCCCCCHHHHHHHHHHHHHcC
Confidence 7777 8988887643 33322 222221 237888899999999998 8887776555456778899999888888
Q ss_pred CeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 154 INIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 154 ~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
++ .+.+....+.. .+....++++.+++.++
T Consensus 157 ~~--~i~l~DT~G~~----~P~~v~~lv~~l~~~~~ 186 (268)
T cd07940 157 AT--TINIPDTVGYL----TPEEFGELIKKLKENVP 186 (268)
T ss_pred CC--EEEECCCCCCC----CHHHHHHHHHHHHHhCC
Confidence 74 33333332221 12235566667776664
No 160
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=97.59 E-value=0.014 Score=51.04 Aligned_cols=174 Identities=16% Similarity=0.197 Sum_probs=111.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-CCccCccc---cHHHHHHHHhccCCCCcEEEEeCccchHhhH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLT-GGEPTVRK---DIEEACFHLSKLKGLKTLAMTTNGLTLARKL 77 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~t-GGEPll~~---~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~ 77 (298)
+|+|.|.. ...++.|+-.++++.+.+.|++.|-+. +.-|-.-| +..++++.+....+.+ +.... ...+.+
T Consensus 6 lRDG~Q~~--~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~-~~~~~---~~~~dv 79 (274)
T cd07938 6 PRDGLQNE--KTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVR-YSALV---PNLRGA 79 (274)
T ss_pred CCCCCcCC--CCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCCCCE-EEEEC---CCHHHH
Confidence 67777665 578999999999999999999999886 44444323 3446666665533442 33322 234568
Q ss_pred HHHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEe-------cCCCHhHHHHHHHH
Q 022377 78 PKLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVM-------RGFNDDEICDFVEL 148 (298)
Q Consensus 78 ~~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~-------~~~n~~~i~~i~~~ 148 (298)
+...+.+++.|.+.+..-+.-....++.. ..++++.+.++.+++.|. .+.++.... + .+.+.+.++++.
T Consensus 80 ~~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~-~v~~~i~~~f~~~~~~~-~~~~~~~~~~~~ 157 (274)
T cd07938 80 ERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGL-RVRGYVSTAFGCPYEGE-VPPERVAEVAER 157 (274)
T ss_pred HHHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEEeEecCCCCCC-CCHHHHHHHHHH
Confidence 88889999999998777432222233322 237888889999999998 776554432 3 356778888888
Q ss_pred HhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 149 TRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 149 ~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
+.+.|++ .+.+....+. . .+....++...+.+.++
T Consensus 158 ~~~~Ga~--~i~l~DT~G~-~---~P~~v~~lv~~l~~~~~ 192 (274)
T cd07938 158 LLDLGCD--EISLGDTIGV-A---TPAQVRRLLEAVLERFP 192 (274)
T ss_pred HHHcCCC--EEEECCCCCc-c---CHHHHHHHHHHHHHHCC
Confidence 8888875 3333333222 1 12234556666666553
No 161
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=97.57 E-value=0.0058 Score=55.82 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=103.2
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~ 81 (298)
+|+|.|.. ...++.++..++++.+.+.|+..|-+ |=|-+.+.-.+.++.+.+. ... ..+.+=+....+.++...
T Consensus 9 LRDG~Q~~--~~~~s~~~k~~ia~~L~~~Gv~~IEv--G~p~~~~~~~e~i~~i~~~-~~~-~~i~~~~r~~~~di~~a~ 82 (365)
T TIGR02660 9 LRDGEQAP--GVAFTAAEKLAIARALDEAGVDELEV--GIPAMGEEERAVIRAIVAL-GLP-ARLMAWCRARDADIEAAA 82 (365)
T ss_pred CCCcCcCC--CCCCCHHHHHHHHHHHHHcCCCEEEE--eCCCCCHHHHHHHHHHHHc-CCC-cEEEEEcCCCHHHHHHHH
Confidence 56777665 46799999999999999999998887 4566666555777777663 332 334332323356788889
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCC--cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRK--GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
++|++.|.+.+..-+.....+++... ..+.+.+.++.+++.|. .+.+.+.-....+.+.+.++++.+.+.|++
T Consensus 83 ~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~-~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~ 157 (365)
T TIGR02660 83 RCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGL-FVSVGGEDASRADPDFLVELAEVAAEAGAD 157 (365)
T ss_pred cCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCC-EEEEeecCCCCCCHHHHHHHHHHHHHcCcC
Confidence 99999999998663322333333322 26777788999999998 777776444335677888898888888875
No 162
>COG2516 Biotin synthase-related enzyme [General function prediction only]
Probab=97.49 E-value=0.0043 Score=54.20 Aligned_cols=150 Identities=18% Similarity=0.270 Sum_probs=114.7
Q ss_pred CCEEEEc-CCccCccccHHHHHHHHhccCCCCcEEEE--eCccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCC--
Q 022377 32 VDKIRLT-GGEPTVRKDIEEACFHLSKLKGLKTLAMT--TNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR-- 106 (298)
Q Consensus 32 ~~~v~~t-GGEPll~~~~~~ii~~~~~~~~~~~v~i~--TNG~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~-- 106 (298)
...++++ =-+|=..+++..+++.++-..+.. ++|. -+...+.+.+...++.|.+.+.|-+|.++++.+..++..
T Consensus 87 ~~rici~~i~~p~~~~d~~~i~~~~~~~~~~~-itiseci~~~~~~~~l~e~~klg~d~l~V~~daa~~~~~e~v~~~s~ 165 (339)
T COG2516 87 FKRICIQQIAYPRALNDLKLILERLHIRLGDP-ITISECITAVSLKEELEEYRKLGADYLGVAEDAANEELFEKVRKTSG 165 (339)
T ss_pred cccccceeeccccccchhhhhhhhhhhccCCc-eehhhhhhcccchHHHHHHHhcchhhhhHHHHhcCHHHHHHHHhccC
Confidence 3567775 477888888998898887324664 6665 455555677888889999999999999999999999533
Q ss_pred --CcHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHH
Q 022377 107 --KGHEKVMESINAAIEV-GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLD 182 (298)
Q Consensus 107 --~~~~~v~~~i~~l~~~-g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~ 182 (298)
.+|++-.+.+..+.++ |..++.+...+.-|..+.++-+.+..+...|..++...|-|..++...+....+.+.+.+
T Consensus 166 s~~S~e~~~~~l~~~~~~~~k~rv~ihliVglGesD~~~ve~~~~v~~~g~~v~Lfaf~P~~gt~me~r~~~pve~Yrk 244 (339)
T COG2516 166 SPHSWERYWEFLEKVAEAFGKGRVGIHLIVGLGESDKDIVETIKRVRKRGGIVSLFAFTPLKGTQMENRKPPPVERYRK 244 (339)
T ss_pred CCCcHHHHHHHHHHHHHHhccCCcceeEEeccCCchHHHHHHHHHHHhcCceEEEEEecccccccccCCCCCcHHHHHH
Confidence 2499999999988875 533677777666778999999999999999998889999998777665555555554433
No 163
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=97.34 E-value=0.03 Score=50.57 Aligned_cols=137 Identities=17% Similarity=0.189 Sum_probs=96.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCC----------ccCccccHHHHHHHHhc-cCCCCcEE-EEeC
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGG----------EPTVRKDIEEACFHLSK-LKGLKTLA-MTTN 69 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGG----------EPll~~~~~~ii~~~~~-~~~~~~v~-i~TN 69 (298)
+|+|.+. .+..++.++..++++.+.+.|+..|-++-| -|...++ .+.++.+.+ ..+.+ +. +...
T Consensus 11 LRDG~q~--~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~-~e~i~~~~~~~~~~~-~~~ll~p 86 (337)
T PRK08195 11 LRDGMHA--VRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTD-EEYIEAAAEVVKQAK-IAALLLP 86 (337)
T ss_pred CCCcCcC--CCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCH-HHHHHHHHHhCCCCE-EEEEecc
Confidence 5777755 477899999999999999999998888521 1222233 234444432 22332 33 3344
Q ss_pred ccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH
Q 022377 70 GLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 70 G~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
|.-..+.++...+.|++.|.|..... + .+.+.+.++.+++.|. .+.++.......+.+++.++++.+
T Consensus 87 g~~~~~dl~~a~~~gvd~iri~~~~~-e-----------~~~~~~~i~~ak~~G~-~v~~~l~~a~~~~~e~l~~~a~~~ 153 (337)
T PRK08195 87 GIGTVDDLKMAYDAGVRVVRVATHCT-E-----------ADVSEQHIGLARELGM-DTVGFLMMSHMAPPEKLAEQAKLM 153 (337)
T ss_pred CcccHHHHHHHHHcCCCEEEEEEecc-h-----------HHHHHHHHHHHHHCCC-eEEEEEEeccCCCHHHHHHHHHHH
Confidence 44344678888899999999886442 1 2468899999999999 888877666546788899999999
Q ss_pred hhCCCe
Q 022377 150 RDRPIN 155 (298)
Q Consensus 150 ~~~g~~ 155 (298)
.+.|++
T Consensus 154 ~~~Ga~ 159 (337)
T PRK08195 154 ESYGAQ 159 (337)
T ss_pred HhCCCC
Confidence 998875
No 164
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=97.31 E-value=0.027 Score=51.70 Aligned_cols=172 Identities=17% Similarity=0.291 Sum_probs=113.8
Q ss_pred CCHHHHHHHHHHHHhCCC--C--EEEEcCCccCccc-c----HHH-HHHHHh----------------ccCCCCcEEEEe
Q 022377 15 LSLNEILRLAYLFVTSGV--D--KIRLTGGEPTVRK-D----IEE-ACFHLS----------------KLKGLKTLAMTT 68 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~--~--~v~~tGGEPll~~-~----~~~-ii~~~~----------------~~~~~~~v~i~T 68 (298)
=+..+...-|+++...|- . .+.|.||-=+..+ + |+. +.+++. ..+-+ -+.+.|
T Consensus 113 dpY~q~~~Rl~qL~~igh~~~KvEliimGGTFta~~~~yqe~Fi~~~~~amn~f~~~le~a~~~ne~~~~r~v-gitiET 191 (515)
T COG1243 113 DPYEQVRARLKQLETIGHTSDKVELIIMGGTFTALSLEYQEWFLKVALKAMNDFGYDLEEAQRKNETAELRCV-GITIET 191 (515)
T ss_pred CcHHHHHHHHHHHHHcCCCcceEEEEEecccccCCCHHHHHHHHHHHHHhhhccchhHHHHHHhhccccccee-EEEEec
Confidence 345667777888888763 2 5667788844333 3 332 222222 11112 367788
Q ss_pred Cccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCCCH-hHHHHH
Q 022377 69 NGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGFND-DEICDF 145 (298)
Q Consensus 69 NG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~n~-~~i~~i 145 (298)
-.-.. ++.++.+++.|...|-+.+++..+++..+..++.+.+.+.++-+.++++|+ .+...++. .||.+. .+++.+
T Consensus 192 RPD~~~ee~ld~mlkyG~TrVELGVQSiyd~Vl~~~~RGHtvedv~~a~rLlKd~Gf-Kv~~HiMpGLPgs~~erDl~~f 270 (515)
T COG1243 192 RPDYIDEEHLDQMLKYGVTRVELGVQSIYDDVLERTKRGHTVEDVVEATRLLKDAGF-KVGYHIMPGLPGSDFERDLESF 270 (515)
T ss_pred CccccCHHHHHHHHhcCCcEEEEeeeeHHHHHHHHhcCCccHHHHHHHHHHHHhcCc-EEEEEecCCCCCCChHHHHHHH
Confidence 87777 568999999999999999999988888888888889999999999999999 77665532 344443 468888
Q ss_pred HHHHhhCCCeeEEEeeec---CCCCC----Cccc--CCCCHHHHHHHHHHhC
Q 022377 146 VELTRDRPINIRFIEFMP---FDGNV----WNVK--KLVPYAEMLDTVVKKF 188 (298)
Q Consensus 146 ~~~~~~~g~~~~~~~~~p---~~~~~----~~~~--~~~~~~e~~~~i~~~~ 188 (298)
.+.+.+-.+.-....+.| ..++. |... .+++.++..+.+...+
T Consensus 271 ~~~f~~p~f~PDmlKIYPtLVi~gT~Ly~mwk~G~Ykpy~~EEaVeli~~i~ 322 (515)
T COG1243 271 REIFEDPRFRPDMLKIYPTLVIEGTELYEMWKRGLYKPYTTEEAVELIVEIY 322 (515)
T ss_pred HHHHhCCCCCCCeEEEeeeEEECCchHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 888776544222333334 23332 4332 3466777777766655
No 165
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=97.30 E-value=0.035 Score=49.98 Aligned_cols=138 Identities=17% Similarity=0.219 Sum_probs=95.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-----CC-----ccCccccHHHHHHHHhccCCCCcEE-EEeCc
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLT-----GG-----EPTVRKDIEEACFHLSKLKGLKTLA-MTTNG 70 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~t-----GG-----EPll~~~~~~ii~~~~~~~~~~~v~-i~TNG 70 (298)
+|+|.+. .+..++.++..++++.+.+.|+..|-++ || -|...+++..+-+.+....+.+ +. +..-|
T Consensus 10 LRDG~q~--~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~-~~~ll~pg 86 (333)
T TIGR03217 10 LRDGMHA--IRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAK-VAVLLLPG 86 (333)
T ss_pred CCCCCcC--CCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCE-EEEEeccC
Confidence 5777755 4778999999999999999999988886 21 1333444432222222222332 44 43344
Q ss_pred cchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHh
Q 022377 71 LTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTR 150 (298)
Q Consensus 71 ~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~ 150 (298)
.-..+.++...+.|++.|.|...-. + .+.+.+.++.+++.|. .+.++.......+.+++.++++.+.
T Consensus 87 ~~~~~dl~~a~~~gvd~iri~~~~~-e-----------~d~~~~~i~~ak~~G~-~v~~~l~~s~~~~~e~l~~~a~~~~ 153 (333)
T TIGR03217 87 IGTVHDLKAAYDAGARTVRVATHCT-E-----------ADVSEQHIGMARELGM-DTVGFLMMSHMTPPEKLAEQAKLME 153 (333)
T ss_pred ccCHHHHHHHHHCCCCEEEEEeccc-h-----------HHHHHHHHHHHHHcCC-eEEEEEEcccCCCHHHHHHHHHHHH
Confidence 4345678888899999999987542 1 2467899999999999 8877765554467788999999999
Q ss_pred hCCCe
Q 022377 151 DRPIN 155 (298)
Q Consensus 151 ~~g~~ 155 (298)
+.|++
T Consensus 154 ~~Ga~ 158 (333)
T TIGR03217 154 SYGAD 158 (333)
T ss_pred hcCCC
Confidence 88875
No 166
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=97.22 E-value=0.035 Score=52.11 Aligned_cols=166 Identities=19% Similarity=0.154 Sum_probs=110.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccC------ccccHHHHHHHHhcc-CCCCcEEEEeCccc--
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT------VRKDIEEACFHLSKL-KGLKTLAMTTNGLT-- 72 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl------l~~~~~~ii~~~~~~-~~~~~v~i~TNG~l-- 72 (298)
+|+|.|-.. ...|+.++...+++.+.+.|+..|-..||.-+ ++++-.+.++.+++. .+.. +.+...|..
T Consensus 10 lRDG~Qs~~-~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~-l~~l~r~~N~~ 87 (467)
T PRK14041 10 LRDGHQSLI-ATRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFLNENPWERLKEIRKRLKNTK-IQMLLRGQNLV 87 (467)
T ss_pred CCccccCcC-CccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhcccCCCHHHHHHHHHHhCCCCE-EEEEecccccc
Confidence 466655432 45799999999999999999999999888653 677777888877663 3443 554334421
Q ss_pred ---------hHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE--EEecCCCHhH
Q 022377 73 ---------LARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC--VVMRGFNDDE 141 (298)
Q Consensus 73 ---------l~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~--vi~~~~n~~~ 141 (298)
+...++...++|++.|.|..-. ++ .+.+...++.+++.|. .+.... +..+..+.+.
T Consensus 88 G~~~~~dDvv~~fv~~A~~~Gvd~irif~~l-nd-----------~~n~~~~i~~ak~~G~-~v~~~i~~t~~p~~t~e~ 154 (467)
T PRK14041 88 GYRHYADDVVELFVKKVAEYGLDIIRIFDAL-ND-----------IRNLEKSIEVAKKHGA-HVQGAISYTVSPVHTLEY 154 (467)
T ss_pred CcccccchhhHHHHHHHHHCCcCEEEEEEeC-CH-----------HHHHHHHHHHHHHCCC-EEEEEEEeccCCCCCHHH
Confidence 1224677788899998888543 33 3567778899999998 776443 3445456777
Q ss_pred HHHHHHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 142 ICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 142 i~~i~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+.++++.+.+.|++ .+.+....+.. .+....++...+++.+
T Consensus 155 ~~~~a~~l~~~Gad--~I~i~Dt~G~l----~P~~v~~Lv~~lk~~~ 195 (467)
T PRK14041 155 YLEFARELVDMGVD--SICIKDMAGLL----TPKRAYELVKALKKKF 195 (467)
T ss_pred HHHHHHHHHHcCCC--EEEECCccCCc----CHHHHHHHHHHHHHhc
Confidence 88888888888875 33344332221 1223456666666655
No 167
>PRK09389 (R)-citramalate synthase; Provisional
Probab=97.21 E-value=0.036 Score=52.58 Aligned_cols=147 Identities=17% Similarity=0.121 Sum_probs=102.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~ 81 (298)
+|+|.|.. +..|+.++-.++++.+.+.|+..|-. |=|-..++=.+.++.+.+. +.. ..+..=+....+.++...
T Consensus 10 LRDG~Q~~--g~~~s~e~K~~ia~~L~~~Gv~~IE~--G~p~~~~~d~e~v~~i~~~-~~~-~~i~a~~r~~~~di~~a~ 83 (488)
T PRK09389 10 LRDGEQTP--GVSLTPEEKLEIARKLDELGVDVIEA--GSAITSEGEREAIKAVTDE-GLN-AEICSFARAVKVDIDAAL 83 (488)
T ss_pred CCCcCCCC--CCCcCHHHHHHHHHHHHHcCCCEEEE--eCCcCCHHHHHHHHHHHhc-CCC-cEEEeecccCHHHHHHHH
Confidence 56776664 67899999999999999999988876 3466666556677777663 443 444443333456688889
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
+++.+.|.+.+...+......++.. ..++.+.+.++.+++.|. .+.+...-....+.+.+.++++.+.+.|++
T Consensus 84 ~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~-~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~ 158 (488)
T PRK09389 84 ECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGL-IVELSGEDASRADLDFLKELYKAGIEAGAD 158 (488)
T ss_pred hCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-EEEEEEeeCCCCCHHHHHHHHHHHHhCCCC
Confidence 9999999999876432222233322 237888888899999998 777766433325667788888888888875
No 168
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=97.20 E-value=0.091 Score=46.32 Aligned_cols=173 Identities=17% Similarity=0.153 Sum_probs=107.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-CCccCccc---cHHHHHHHHhccCCCCcEEEEeCccchHhhH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLT-GGEPTVRK---DIEEACFHLSKLKGLKTLAMTTNGLTLARKL 77 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~t-GGEPll~~---~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~ 77 (298)
||+|.|.. +..++.++-.++++.+.+.|+..|-+. --.|=..| +-.+.++.+.+..+.. +.... ...+.+
T Consensus 12 lRDG~Q~~--~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~-~~~l~---~~~~~i 85 (287)
T PRK05692 12 PRDGLQNE--KRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVT-YAALT---PNLKGL 85 (287)
T ss_pred CCccccCc--CCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCe-EEEEe---cCHHHH
Confidence 67877765 678999999999999999999988775 22232222 2356666665533442 33221 124567
Q ss_pred HHHHHcCCCeEEEecCCCCHHhhhhhcCCCc----HHHHHHHHHHHHHcCCCCEEEEEE--Ee-c---CCCHhHHHHHHH
Q 022377 78 PKLKESGLTSVNISLDTLVPAKFEFLTRRKG----HEKVMESINAAIEVGYNPVKVNCV--VM-R---GFNDDEICDFVE 147 (298)
Q Consensus 78 ~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~----~~~v~~~i~~l~~~g~~~v~i~~v--i~-~---~~n~~~i~~i~~ 147 (298)
+...+.|++.|.+.+.. ++. |....-+.+ .+.+.+.++.+++.|. .+..... +. + ..+.+.+.++++
T Consensus 86 e~A~~~g~~~v~i~~~~-s~~-~~~~n~~~~~~e~l~~~~~~v~~ak~~g~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 162 (287)
T PRK05692 86 EAALAAGADEVAVFASA-SEA-FSQKNINCSIAESLERFEPVAEAAKQAGV-RVRGYVSCVLGCPYEGEVPPEAVADVAE 162 (287)
T ss_pred HHHHHcCCCEEEEEEec-CHH-HHHHHhCCCHHHHHHHHHHHHHHHHHcCC-EEEEEEEEEecCCCCCCCCHHHHHHHHH
Confidence 88888999999999765 443 332221222 5667778888888898 6654433 22 1 135677888888
Q ss_pred HHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 148 LTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 148 ~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
-+.+.|++ .+.+....+.. .+....++.+.+.+.++
T Consensus 163 ~~~~~G~d--~i~l~DT~G~~----~P~~v~~lv~~l~~~~~ 198 (287)
T PRK05692 163 RLFALGCY--EISLGDTIGVG----TPGQVRAVLEAVLAEFP 198 (287)
T ss_pred HHHHcCCc--EEEeccccCcc----CHHHHHHHHHHHHHhCC
Confidence 88888885 33333332221 12235566666666653
No 169
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=97.17 E-value=0.048 Score=51.03 Aligned_cols=166 Identities=15% Similarity=0.142 Sum_probs=110.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCc------cCccccHHHHHHHHhcc-CCCCcEEEEeCcc---
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE------PTVRKDIEEACFHLSKL-KGLKTLAMTTNGL--- 71 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE------Pll~~~~~~ii~~~~~~-~~~~~v~i~TNG~--- 71 (298)
+|+|.|-.. ...++.++...+++.+.+.|+..|-..||. -+++++=.+.++.+++. .+.. +.+...|.
T Consensus 11 lRDG~Qs~~-~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~-l~~l~r~~N~~ 88 (448)
T PRK12331 11 LRDGQQSLI-ATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFLNEDPWERLRKIRKAVKKTK-LQMLLRGQNLL 88 (448)
T ss_pred CCccccCcC-CcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccCCCCHHHHHHHHHHhCCCCE-EEEEecccccc
Confidence 466555432 457999999999999999999999999887 55788767777877663 3443 55444332
Q ss_pred --------chHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEE--EEEecCCCHhH
Q 022377 72 --------TLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN--CVVMRGFNDDE 141 (298)
Q Consensus 72 --------ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~--~vi~~~~n~~~ 141 (298)
...+.++...++|++.|.|.... ++. +.+.+.++.+++.|. .+.+. ++..+-.+.+.
T Consensus 89 G~~~~pddvv~~~v~~A~~~Gvd~irif~~l-nd~-----------~n~~~~v~~ak~~G~-~v~~~i~~t~~p~~~~~~ 155 (448)
T PRK12331 89 GYRNYADDVVESFVQKSVENGIDIIRIFDAL-NDV-----------RNLETAVKATKKAGG-HAQVAISYTTSPVHTIDY 155 (448)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEec-CcH-----------HHHHHHHHHHHHcCC-eEEEEEEeecCCCCCHHH
Confidence 22456788889999999988544 322 136668889999998 76544 44444356677
Q ss_pred HHHHHHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 142 ICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 142 i~~i~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+.++++-+.+.|++ .+.+....+.. .+....++...+++.+
T Consensus 156 ~~~~a~~l~~~Gad--~I~i~Dt~G~l----~P~~v~~lv~alk~~~ 196 (448)
T PRK12331 156 FVKLAKEMQEMGAD--SICIKDMAGIL----TPYVAYELVKRIKEAV 196 (448)
T ss_pred HHHHHHHHHHcCCC--EEEEcCCCCCC----CHHHHHHHHHHHHHhc
Confidence 88888888888875 33333332221 1223456666666655
No 170
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=97.04 E-value=0.12 Score=45.44 Aligned_cols=172 Identities=20% Similarity=0.227 Sum_probs=106.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHH-HhCCCCEEEEcCCccCccccHHHHHHHHhccC-------CCCcEEEEeCccch
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLF-VTSGVDKIRLTGGEPTVRKDIEEACFHLSKLK-------GLKTLAMTTNGLTL 73 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~-~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~-------~~~~v~i~TNG~ll 73 (298)
||+|.|.. +..+|.++-.++++.+ .+.|+..|-++- |-.+++-.+.+..+.+.. +...+.+. ..
T Consensus 5 lRDG~Q~~--~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~--~~~s~~e~~av~~~~~~~~~~~~~~~~~~~a~~----~~ 76 (280)
T cd07945 5 LRDGEQTS--GVSFSPSEKLNIAKILLQELKVDRIEVAS--ARVSEGEFEAVQKIIDWAAEEGLLDRIEVLGFV----DG 76 (280)
T ss_pred CCCcCcCC--CCccCHHHHHHHHHHHHHHhCCCEEEecC--CCCCHHHHHHHHHHHHHhhhhccccCcEEEEec----Cc
Confidence 68877755 5789999999999996 677999888753 667775444444443311 12111121 11
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEe----cCCCHhHHHHHHH
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVM----RGFNDDEICDFVE 147 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~----~~~n~~~i~~i~~ 147 (298)
...++...++|.+.|.+.+-.-+......++.. ..++++.+.++.+++.|. .+.+...-. + .+.+.+.++++
T Consensus 77 ~~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r-~~~~~~~~~~~ 154 (280)
T cd07945 77 DKSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGI-EVNIYLEDWSNGMR-DSPDYVFQLVD 154 (280)
T ss_pred HHHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCC-EEEEEEEeCCCCCc-CCHHHHHHHHH
Confidence 345788888899999999866322222222322 237888888999999998 766655321 3 46778888898
Q ss_pred HHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 148 LTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 148 ~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
.+.+.|++ .+.+....+.. .+....++.+.+.+.++
T Consensus 155 ~~~~~G~~--~i~l~DT~G~~----~P~~v~~l~~~l~~~~~ 190 (280)
T cd07945 155 FLSDLPIK--RIMLPDTLGIL----SPFETYTYISDMVKRYP 190 (280)
T ss_pred HHHHcCCC--EEEecCCCCCC----CHHHHHHHHHHHHhhCC
Confidence 88888875 33333332221 11234555666665553
No 171
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=97.04 E-value=0.11 Score=44.90 Aligned_cols=169 Identities=14% Similarity=0.143 Sum_probs=115.7
Q ss_pred HHHHHHHHHHhC---CCCEEEEcCCccCccc-c-HHHHHHHHhccCCCCcEEEEeCccchH-hhHHHH---HHcCCCeEE
Q 022377 19 EILRLAYLFVTS---GVDKIRLTGGEPTVRK-D-IEEACFHLSKLKGLKTLAMTTNGLTLA-RKLPKL---KESGLTSVN 89 (298)
Q Consensus 19 ~~~~~i~~~~~~---~~~~v~~tGGEPll~~-~-~~~ii~~~~~~~~~~~v~i~TNG~ll~-~~~~~l---~~~~~~~v~ 89 (298)
++...++.+.+. +-.-+.|.-.--+-.| + +.++.+.+.+..++.-++|-|-.--++ +.++-| .+..--+|.
T Consensus 68 Q~~~q~~~~~kK~~~~kyiaYFQ~~TNTyApvevLre~ye~aL~~~~VVGLsIgTRPDClpd~VldlL~e~~~r~~vWvE 147 (312)
T COG1242 68 QFKEQAERMHKKWKRGKYIAYFQAYTNTYAPVEVLREMYEQALSEAGVVGLSIGTRPDCLPDDVLDLLAEYNKRYEVWVE 147 (312)
T ss_pred HHHHHHHHHHHhhcCCcEEEEEeccccccCcHHHHHHHHHHHhCcCCeeEEeecCCCCCCcHHHHHHHHHHhhheEEEEE
Confidence 466666655441 2245666666666655 4 558888877766764455666665564 444444 333334688
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCC-eeEEEeeecCCCC
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC-VVMRGFNDDEICDFVELTRDRPI-NIRFIEFMPFDGN 167 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~-~~~~~~~~p~~~~ 167 (298)
+.|.+.+.++-+.++++.+|+...++++.+++.|+ +|...+ .-.||++.++..+.++.+..+|+ .+.+..+.-+.++
T Consensus 148 LGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkrgI-kvc~HiI~GLPgE~~~~mleTak~v~~~~v~GIKlH~LhvvkgT 226 (312)
T COG1242 148 LGLQTAHDKTLKRINRGHDFACYVDAVKRLRKRGI-KVCTHLINGLPGETRDEMLETAKIVAELGVDGIKLHPLHVVKGT 226 (312)
T ss_pred eccchhhHHHHHHHhcccchHHHHHHHHHHHHcCC-eEEEEEeeCCCCCCHHHHHHHHHHHHhcCCceEEEEEEEEecCC
Confidence 89999999999999999999999999999999999 887765 44588888999999999999988 4555544444443
Q ss_pred C----Cc--ccCCCCHHHHHHHHHHhC
Q 022377 168 V----WN--VKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 168 ~----~~--~~~~~~~~e~~~~i~~~~ 188 (298)
. |. .-..++.+|..+.+.++.
T Consensus 227 ~m~k~Y~~G~l~~ls~eeYv~~~~d~l 253 (312)
T COG1242 227 PMEKMYEKGRLKFLSLEEYVELVCDQL 253 (312)
T ss_pred hHHHHHHcCCceeccHHHHHHHHHHHH
Confidence 2 21 123567777777666543
No 172
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=97.02 E-value=0.07 Score=51.66 Aligned_cols=166 Identities=17% Similarity=0.141 Sum_probs=112.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCc------cCccccHHHHHHHHhc-cCCCCcEEEEeCcc---
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGE------PTVRKDIEEACFHLSK-LKGLKTLAMTTNGL--- 71 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE------Pll~~~~~~ii~~~~~-~~~~~~v~i~TNG~--- 71 (298)
+|+|.|-.. ...|+.++..++++.+.+.|+..|-+.||- ++++++-.+.++.+++ ..+.. +.+...|.
T Consensus 6 lRDG~Qs~~-~~~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~-l~~L~Rg~N~~ 83 (582)
T TIGR01108 6 LRDAHQSLF-ATRMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKALPNTP-LQMLLRGQNLL 83 (582)
T ss_pred CCccccccC-CccCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccCCCCHHHHHHHHHHhCCCCE-EEEEEcccccc
Confidence 466544432 457999999999999999999999998874 6788887788888876 33553 65554432
Q ss_pred --------chHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE--EEecCCCHhH
Q 022377 72 --------TLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC--VVMRGFNDDE 141 (298)
Q Consensus 72 --------ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~--vi~~~~n~~~ 141 (298)
.+.+.++...++|++.+.|.... ++ .+.+...++.+++.|. .+.... +..+-.+.+.
T Consensus 84 G~~~ypddvv~~~v~~a~~~Gvd~irif~~l-nd-----------~~n~~~~i~~ak~~G~-~v~~~i~~t~~p~~~~~~ 150 (582)
T TIGR01108 84 GYRHYADDVVERFVKKAVENGMDVFRIFDAL-ND-----------PRNLQAAIQAAKKHGA-HAQGTISYTTSPVHTLET 150 (582)
T ss_pred ccccCchhhHHHHHHHHHHCCCCEEEEEEec-Cc-----------HHHHHHHHHHHHHcCC-EEEEEEEeccCCCCCHHH
Confidence 12346788888999998888433 32 1467888899999998 776543 3444346778
Q ss_pred HHHHHHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 142 ICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 142 i~~i~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+.++++.+.+.|++ .+.+....+.. .+....++...+++.+
T Consensus 151 ~~~~~~~~~~~Gad--~I~i~Dt~G~~----~P~~v~~lv~~lk~~~ 191 (582)
T TIGR01108 151 YLDLAEELLEMGVD--SICIKDMAGIL----TPKAAYELVSALKKRF 191 (582)
T ss_pred HHHHHHHHHHcCCC--EEEECCCCCCc----CHHHHHHHHHHHHHhC
Confidence 88888888888875 33344332221 1123456666666655
No 173
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=97.01 E-value=0.0064 Score=51.97 Aligned_cols=168 Identities=20% Similarity=0.249 Sum_probs=106.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc-CCCCcEEEEeCccc--hHhhHHHHHHcCCCeE
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTLAMTTNGLT--LARKLPKLKESGLTSV 88 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~-~~~~~v~i~TNG~l--l~~~~~~l~~~~~~~v 88 (298)
...++.++..++++.+.+.|+..|.+. =|+..++-.+.++.+.+. ... .+...+-... +...++.+.+.+++.+
T Consensus 8 ~~~~~~~~k~~i~~~L~~~Gv~~iEvg--~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~g~~~i 84 (237)
T PF00682_consen 8 GVAFSTEEKLEIAKALDEAGVDYIEVG--FPFASEDDFEQVRRLREALPNA-RLQALCRANEEDIERAVEAAKEAGIDII 84 (237)
T ss_dssp STT--HHHHHHHHHHHHHHTTSEEEEE--HCTSSHHHHHHHHHHHHHHHSS-EEEEEEESCHHHHHHHHHHHHHTTSSEE
T ss_pred CCCcCHHHHHHHHHHHHHhCCCEEEEc--ccccCHHHHHHhhhhhhhhccc-ccceeeeehHHHHHHHHHhhHhccCCEE
Confidence 344999999999999999999988876 677777644444444332 122 2333222211 2334666777999999
Q ss_pred EEecCCCCHHhhhhhcCCC---cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeecCC
Q 022377 89 NISLDTLVPAKFEFLTRRK---GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFD 165 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~---~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p~~ 165 (298)
.+.+.. ++.......+.. ..+.+.+.++.+++.|. .+.+++.-....+.+++.++++.+.+.|++. +.+....
T Consensus 85 ~i~~~~-s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--i~l~Dt~ 160 (237)
T PF00682_consen 85 RIFISV-SDLHIRKNLNKSREEALERIEEAVKYAKELGY-EVAFGCEDASRTDPEELLELAEALAEAGADI--IYLADTV 160 (237)
T ss_dssp EEEEET-SHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTS-EEEEEETTTGGSSHHHHHHHHHHHHHHT-SE--EEEEETT
T ss_pred EecCcc-cHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCC-ceEeCccccccccHHHHHHHHHHHHHcCCeE--EEeeCcc
Confidence 999776 443322222321 27788888899999999 8877775543367888999999999888853 3333332
Q ss_pred CCCCcccCCCCHHHHHHHHHHhCCC
Q 022377 166 GNVWNVKKLVPYAEMLDTVVKKFPG 190 (298)
Q Consensus 166 ~~~~~~~~~~~~~e~~~~i~~~~~~ 190 (298)
+. . .+....++.+.+.+.++.
T Consensus 161 G~-~---~P~~v~~lv~~~~~~~~~ 181 (237)
T PF00682_consen 161 GI-M---TPEDVAELVRALREALPD 181 (237)
T ss_dssp S--S----HHHHHHHHHHHHHHSTT
T ss_pred CC-c---CHHHHHHHHHHHHHhccC
Confidence 22 1 123356778888888754
No 174
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=97.01 E-value=0.2 Score=43.64 Aligned_cols=156 Identities=15% Similarity=0.173 Sum_probs=101.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEc---CCccC-----ccccHHHHHHHHhcc--CCCCcEEEEeCccch-HhhHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLT---GGEPT-----VRKDIEEACFHLSKL--KGLKTLAMTTNGLTL-ARKLPKL 80 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~t---GGEPl-----l~~~~~~ii~~~~~~--~~~~~v~i~TNG~ll-~~~~~~l 80 (298)
+-.++.++..+++..+.+.|+..|-+. +++-. .+.+ .+.++.+.+. .+.+ +......... .+.++..
T Consensus 14 ~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~~a 91 (266)
T cd07944 14 NWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCD-DEFLRRLLGDSKGNTK-IAVMVDYGNDDIDLLEPA 91 (266)
T ss_pred CccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCC-HHHHHHHHhhhccCCE-EEEEECCCCCCHHHHHHH
Confidence 667999999999999999999988764 33311 1111 1223333221 1443 5555554433 4567777
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEe
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIE 160 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~ 160 (298)
.+.+++.|.+++.. ..++.+.+.++.+++.|+ .+.++..-..+.+.+.+.++++.+.+.|++ .+.
T Consensus 92 ~~~gv~~iri~~~~------------~~~~~~~~~i~~ak~~G~-~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~--~i~ 156 (266)
T cd07944 92 SGSVVDMIRVAFHK------------HEFDEALPLIKAIKEKGY-EVFFNLMAISGYSDEELLELLELVNEIKPD--VFY 156 (266)
T ss_pred hcCCcCEEEEeccc------------ccHHHHHHHHHHHHHCCC-eEEEEEEeecCCCHHHHHHHHHHHHhCCCC--EEE
Confidence 88899999998632 258899999999999999 888887655557889999999999888874 333
Q ss_pred eecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 161 FMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+....+.. .+....++...+.+.+
T Consensus 157 l~DT~G~~----~P~~v~~lv~~l~~~~ 180 (266)
T cd07944 157 IVDSFGSM----YPEDIKRIISLLRSNL 180 (266)
T ss_pred EecCCCCC----CHHHHHHHHHHHHHhc
Confidence 34332221 1123445555555544
No 175
>KOG1160 consensus Fe-S oxidoreductase [Energy production and conversion]
Probab=96.98 E-value=0.0078 Score=54.67 Aligned_cols=112 Identities=19% Similarity=0.293 Sum_probs=87.8
Q ss_pred EEEEc-CCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCc---H
Q 022377 34 KIRLT-GGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKG---H 109 (298)
Q Consensus 34 ~v~~t-GGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~---~ 109 (298)
.-.++ =|||.++|.+-.+++.+.+ +.+. --+.||+. ..+.+..+.. +..+-+|+|..++..-..+-+.-. |
T Consensus 356 hcalslVgepi~yp~in~f~k~lH~-k~is-sflvtnaq-~pe~~rnvk~--vtqlyvsvda~Tktslk~idrPlfkdFw 430 (601)
T KOG1160|consen 356 HCALSLVGEPIMYPEINPFAKLLHQ-KLIS-SFLVTNAQ-FPEDIRNVKP--VTQLYVSVDASTKTSLKKIDRPLFKDFW 430 (601)
T ss_pred hheeeeecccccchhhhHHHHHHHh-ccch-HHhccccc-ChHHHhchhh--hheeEEEEeecchhhhcCCCCchHHHHH
Confidence 34444 5999999999999999988 4885 66889994 4555666665 677999999988776555544322 7
Q ss_pred HHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 110 EKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 110 ~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
++.++.++.+++... ...++.++..+.|.+++.+..+++..
T Consensus 431 Er~~d~l~~lk~K~q-rtvyRlTlVkg~n~dd~~Ayfnlv~r 471 (601)
T KOG1160|consen 431 ERFLDSLKALKKKQQ-RTVYRLTLVKGWNSDDLPAYFNLVSR 471 (601)
T ss_pred HHHHHHHHHHHHhhc-ceEEEEEEeccccccccHHHHHHHhc
Confidence 888889988887655 78899999999999999999998875
No 176
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=96.98 E-value=0.07 Score=51.80 Aligned_cols=166 Identities=14% Similarity=0.110 Sum_probs=112.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCcc------CccccHHHHHHHHhcc-CCCCcEEEEeCccc--
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEP------TVRKDIEEACFHLSKL-KGLKTLAMTTNGLT-- 72 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEP------ll~~~~~~ii~~~~~~-~~~~~v~i~TNG~l-- 72 (298)
+|+|.|-.. ...|+.++...++..+.+.|+..+-..||.- +++++-.+.++.+++. .+.. +.+...|..
T Consensus 11 lRDG~Qs~~-atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl~edp~e~l~~l~~~~~~~~-l~~l~Rg~N~~ 88 (592)
T PRK09282 11 LRDAHQSLL-ATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYLNEDPWERLRKLKKALPNTP-LQMLLRGQNLV 88 (592)
T ss_pred CCccccccC-CccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccCCccHHHHHHHHHHhCCCCE-EEEEecccccc
Confidence 466654432 4579999999999999999999999998864 6788877777877664 3553 666554421
Q ss_pred ---------hHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE--ecCCCHhH
Q 022377 73 ---------LARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV--MRGFNDDE 141 (298)
Q Consensus 73 ---------l~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi--~~~~n~~~ 141 (298)
..+.++...++|++.+.|..-. ++ .+.+...++.+++.|. .+.....+ .+-++.+.
T Consensus 89 gy~~ypd~vv~~~v~~A~~~Gvd~irif~~l-nd-----------~~n~~~~i~~ak~~G~-~v~~~i~~t~~p~~t~~~ 155 (592)
T PRK09282 89 GYRHYPDDVVEKFVEKAAENGIDIFRIFDAL-ND-----------VRNMEVAIKAAKKAGA-HVQGTISYTTSPVHTIEK 155 (592)
T ss_pred ccccccchhhHHHHHHHHHCCCCEEEEEEec-Ch-----------HHHHHHHHHHHHHcCC-EEEEEEEeccCCCCCHHH
Confidence 2346788888999988887433 32 2467788899999998 77755544 44346677
Q ss_pred HHHHHHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 142 ICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 142 i~~i~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+.++++-+.+.|++ .+.+....+.. .+....++...+++.+
T Consensus 156 ~~~~a~~l~~~Gad--~I~i~Dt~G~~----~P~~~~~lv~~lk~~~ 196 (592)
T PRK09282 156 YVELAKELEEMGCD--SICIKDMAGLL----TPYAAYELVKALKEEV 196 (592)
T ss_pred HHHHHHHHHHcCCC--EEEECCcCCCc----CHHHHHHHHHHHHHhC
Confidence 78888878788875 33444332221 1223456666776665
No 177
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=96.84 E-value=0.12 Score=50.07 Aligned_cols=157 Identities=16% Similarity=0.177 Sum_probs=108.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCC------ccCccccHHHHHHHHhcc-CCCCcEEEEeCcc-----------ch
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGG------EPTVRKDIEEACFHLSKL-KGLKTLAMTTNGL-----------TL 73 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGG------EPll~~~~~~ii~~~~~~-~~~~~v~i~TNG~-----------ll 73 (298)
...|+.++...+...+.+.|+..+-..|| =|++..+=.+.++.+++. .+. .+.+...|. .+
T Consensus 21 ~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~-~lqml~Rg~n~vg~~~ypddvv 99 (593)
T PRK14040 21 ATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNT-PQQMLLRGQNLLGYRHYADDVV 99 (593)
T ss_pred ccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCC-eEEEEecCcceeccccCcHHHH
Confidence 45799999999999999999999999877 677877766677766663 345 366666764 22
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEE--EEEEEecCCCHhHHHHHHHHHhh
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVK--VNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~--i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
.+.++...++|++.+.|. |+.+. .+.+...++.+++.|. .+. +.++..+..+.+.+.++++.+.+
T Consensus 100 ~~~v~~a~~~Gid~~rif-d~lnd-----------~~~~~~ai~~ak~~G~-~~~~~i~yt~~p~~~~~~~~~~a~~l~~ 166 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVF-DAMND-----------PRNLETALKAVRKVGA-HAQGTLSYTTSPVHTLQTWVDLAKQLED 166 (593)
T ss_pred HHHHHHHHhcCCCEEEEe-eeCCc-----------HHHHHHHHHHHHHcCC-eEEEEEEEeeCCccCHHHHHHHHHHHHH
Confidence 345777888899999998 44332 3578889999999998 654 44555665677888888888888
Q ss_pred CCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 152 RPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 152 ~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
.|++ .+.+....+.. .+....++...+++.+
T Consensus 167 ~Gad--~i~i~Dt~G~l----~P~~~~~lv~~lk~~~ 197 (593)
T PRK14040 167 MGVD--SLCIKDMAGLL----KPYAAYELVSRIKKRV 197 (593)
T ss_pred cCCC--EEEECCCCCCc----CHHHHHHHHHHHHHhc
Confidence 8875 33333332221 1123455666666655
No 178
>PRK00915 2-isopropylmalate synthase; Validated
Probab=96.80 E-value=0.1 Score=49.88 Aligned_cols=148 Identities=18% Similarity=0.115 Sum_probs=97.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc-CCCCcEEEEeCc--cchHhhHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTLAMTTNG--LTLARKLP 78 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~-~~~~~v~i~TNG--~ll~~~~~ 78 (298)
+|+|.|.. +..||.++-.++++.+.+.|+..|-+ |=|..++.=.+.++.+.+. .+.. +...+-+ .-++..++
T Consensus 12 LRDG~Q~~--g~~~s~e~K~~ia~~L~~~Gv~~IE~--G~p~~s~~d~~~v~~i~~~~~~~~-i~a~~r~~~~did~a~~ 86 (513)
T PRK00915 12 LRDGEQSP--GASLTVEEKLQIAKQLERLGVDVIEA--GFPASSPGDFEAVKRIARTVKNST-VCGLARAVKKDIDAAAE 86 (513)
T ss_pred CCcCCCCC--CCCCCHHHHHHHHHHHHHcCCCEEEE--cCCCCChHHHHHHHHHHhhCCCCE-EEEEccCCHHHHHHHHH
Confidence 46666655 35799999999999999999998877 5577777644555666442 2332 4433322 12233455
Q ss_pred HHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 79 KLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 79 ~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
.+.+++.+.|.+.+...+......++.. ..++.+.+.++.+++.|. .|.+...-....+.+.+.++++.+.+.|++
T Consensus 87 a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~-~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~ 164 (513)
T PRK00915 87 ALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTD-DVEFSAEDATRTDLDFLCRVVEAAIDAGAT 164 (513)
T ss_pred HhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEeCCCCCCCHHHHHHHHHHHHHcCCC
Confidence 5557888989999877433222333332 237778889999999998 776665333225667788888888888874
No 179
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=96.75 E-value=0.11 Score=45.57 Aligned_cols=143 Identities=18% Similarity=0.228 Sum_probs=93.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCC-----CCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhh
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSG-----VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARK 76 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~-----~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~ 76 (298)
||+|.|..+. . +.++=.++++.+.+.| ++.|-+. ++.+.+...+.+.+.. +.....++.......+.
T Consensus 8 lRDG~Q~~~~--~-~~~~Kv~i~~~L~~~G~~~~~v~~IE~~---s~~~~d~~~v~~~~~~--~~~~~~v~~~~r~~~~d 79 (279)
T cd07947 8 FRDGQQARPP--Y-TVEQIVKIYDYLHELGGGSGVIRQTEFF---LYTEKDREAVEACLDR--GYKFPEVTGWIRANKED 79 (279)
T ss_pred CCCcCCCCCC--C-CHHHHHHHHHHHHHcCCCCCccceEEec---CcChHHHHHHHHHHHc--CCCCCEEEEEecCCHHH
Confidence 7899997533 4 9999999999999999 9999882 5666666666665543 32112344444334567
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhh-hhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEE-EecCCCH-----hHHHHHHH
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKF-EFLTRR--KGHEKVMESINAAIEVGYNPVKVNCV-VMRGFND-----DEICDFVE 147 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~-~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~v-i~~~~n~-----~~i~~i~~ 147 (298)
++...++|++.|.+.+-. ++.+. ..++.. ..++++.+.++.+++.|. .+.+..- .++ ... +-+.++++
T Consensus 80 ie~A~~~g~~~v~i~~s~-S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~-~v~~~~ed~~r-~d~~~~v~~~~~~~~~ 156 (279)
T cd07947 80 LKLVKEMGLKETGILMSV-SDYHIFKKLKMTREEAMEKYLEIVEEALDHGI-KPRCHLEDITR-ADIYGFVLPFVNKLMK 156 (279)
T ss_pred HHHHHHcCcCEEEEEEcC-CHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCC-eEEEEEEcccC-CCcccchHHHHHHHHH
Confidence 888889999999998865 44322 233332 237778888888888888 6655442 222 222 24667777
Q ss_pred HHhhCCCe
Q 022377 148 LTRDRPIN 155 (298)
Q Consensus 148 ~~~~~g~~ 155 (298)
.+.+.|++
T Consensus 157 ~~~~~G~~ 164 (279)
T cd07947 157 LSKESGIP 164 (279)
T ss_pred HHHHCCCC
Confidence 77667875
No 180
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=96.74 E-value=0.2 Score=48.07 Aligned_cols=175 Identities=14% Similarity=0.120 Sum_probs=112.5
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccc--------h
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLT--------L 73 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~l--------l 73 (298)
+|+|.|.. +..|+.++-.++++.+.++|+..|-. |=|...|.-.+.++.+.+. ++....+..-+.. .
T Consensus 9 LRDG~Q~~--g~~~s~eeKl~Ia~~L~~~GVd~IE~--G~p~~s~~d~~~v~~i~~~-~~~~~~i~~~~r~~r~~~~~~~ 83 (526)
T TIGR00977 9 LRDGAQRE--GVSFSLEDKIRIAERLDDLGIHYIEG--GWPGANPKDVQFFWQLKEM-NFKNAKIVAFCSTRRPHKKVEE 83 (526)
T ss_pred CCCCCCCC--CCCCCHHHHHHHHHHHHHcCCCEEEE--eCCCCChHHHHHHHHHHHh-CCCCcEEEEEeeecCCCCCCch
Confidence 46666654 57899999999999999999988776 6788888766677766542 3311233222211 1
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEE-E---ecCCCHhHHHHHHH
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCV-V---MRGFNDDEICDFVE 147 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~v-i---~~~~n~~~i~~i~~ 147 (298)
+..++.+.+++.+.|.+.+-+.+......++.. ..++.+.+.++.+++.|. .|.+... + ++ .+.+.+.++++
T Consensus 84 d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~-~V~~~~e~f~D~~r-~~~~~l~~~~~ 161 (526)
T TIGR00977 84 DKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGD-EVIYDAEHFFDGYK-ANPEYALATLA 161 (526)
T ss_pred HHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeeccc-CCHHHHHHHHH
Confidence 345788899999999998877433332333332 237788888999999998 7765443 1 24 56788899999
Q ss_pred HHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 148 LTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 148 ~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
-+.+.|++. +.+...-+. ..+....++.+.+.+.++
T Consensus 162 ~a~~aGad~--i~i~DTvG~----~~P~~v~~li~~l~~~~~ 197 (526)
T TIGR00977 162 TAQQAGADW--LVLCDTNGG----TLPHEISEITTKVKRSLK 197 (526)
T ss_pred HHHhCCCCe--EEEecCCCC----cCHHHHHHHHHHHHHhCC
Confidence 988888752 333322211 112234566666666553
No 181
>PRK00955 hypothetical protein; Provisional
Probab=96.71 E-value=0.19 Score=48.80 Aligned_cols=118 Identities=15% Similarity=0.261 Sum_probs=80.9
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCcc----ch----HhhHHHHHHcCCC-eEEEecCCCCHHhhhhhcCCCc--HHHHHHH
Q 022377 47 DIEEACFHLSKLKGLKTLAMTTNGL----TL----ARKLPKLKESGLT-SVNISLDTLVPAKFEFLTRRKG--HEKVMES 115 (298)
Q Consensus 47 ~~~~ii~~~~~~~~~~~v~i~TNG~----ll----~~~~~~l~~~~~~-~v~iSldg~~~~~~~~ir~~~~--~~~v~~~ 115 (298)
.+.++++.+++..+++.+.+ +.|. ++ ++.++.|.+..+. .+.|.+.+.+++.-+.+++... +++.++.
T Consensus 388 ~l~~LLr~l~~l~gvkrv~i-sSGIR~D~l~~~~~~~~l~eL~~~~vsg~L~IapESgSd~VLk~M~K~~~~~~~~f~~~ 466 (620)
T PRK00955 388 EYLELLRKVRKLPGVKKVFI-RSGIRYDYLLHDKNDEFFEELCEHHVSGQLKVAPEHISDRVLKLMGKPSREVYDKFVKK 466 (620)
T ss_pred HHHHHHHHHhccCCceEEEe-ecceeccccccCCcHHHHHHHHHHhcCCCceeCcCCCChHHHHHhCCCCHHHHHHHHHH
Confidence 47899999988777754545 4442 22 2357777775444 6999999999988888876532 5555555
Q ss_pred HHHHH-HcCCCC--EEEEE-EEecCCCHhHHHHHHHHHhhCCCe-eEEEeeecCCC
Q 022377 116 INAAI-EVGYNP--VKVNC-VVMRGFNDDEICDFVELTRDRPIN-IRFIEFMPFDG 166 (298)
Q Consensus 116 i~~l~-~~g~~~--v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~-~~~~~~~p~~~ 166 (298)
++.+. +.|+ . +...+ +-.||.+.+++.++++|+.++++. ..+..|.|..+
T Consensus 467 ~~~i~~~~G~-~~~I~~yfIvGfPGETeEDf~et~eflkel~~~~~qV~~fTP~PG 521 (620)
T PRK00955 467 FDRINKKLGK-KQYLVPYLMSSHPGSTLEDAIELAEYTKDLGYQPEQVQDFYPTPG 521 (620)
T ss_pred HHHhhhhcCC-CccEEEEEEEECCCCCHHHHHHHHHHHHHcCCCcceeeeeecCCC
Confidence 44444 5676 4 33333 344889999999999999999874 46667778654
No 182
>PRK01254 hypothetical protein; Provisional
Probab=96.67 E-value=0.14 Score=49.79 Aligned_cols=152 Identities=13% Similarity=0.186 Sum_probs=103.2
Q ss_pred CCCCHHHHHHHHHHHHhC--CCCEEE--EcC------C----c------------------cCc---cccHHHHHHHHhc
Q 022377 13 QLLSLNEILRLAYLFVTS--GVDKIR--LTG------G----E------------------PTV---RKDIEEACFHLSK 57 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~--~~~~v~--~tG------G----E------------------Pll---~~~~~~ii~~~~~ 57 (298)
..-|.|.+.+=++.+.+. |++.+. +.| | . +-+ +..+.++++.+++
T Consensus 400 rSRS~esIL~Ea~~L~~~~pGfKgii~DLgGptaN~YG~~c~d~~~~~~C~~~~Cl~P~~C~nL~~dh~~l~eLLrkLr~ 479 (707)
T PRK01254 400 QSRSEESIINEIEAIRDKVPGFTGVISDLGGPTANMYRLRCKSPRAEQTCRRLSCVYPDICPHLDTDHEPTINLYRRARD 479 (707)
T ss_pred eeCCHHHHHHHHHHHHHhCCCcEEEEeccCCCccccccccccccccccccccccccCcccccccCCCHHHHHHHHHHHHh
Confidence 456777777777777642 666655 333 2 2 222 2347899999988
Q ss_pred cCCCCcEEEEeC-cc--ch--HhhHHHHHHcCCC-eEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHc-CCCCEE
Q 022377 58 LKGLKTLAMTTN-GL--TL--ARKLPKLKESGLT-SVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEV-GYNPVK 128 (298)
Q Consensus 58 ~~~~~~v~i~TN-G~--ll--~~~~~~l~~~~~~-~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~-g~~~v~ 128 (298)
..|++.+-+.+. -+ .+ ++.++.+.+..+. ++.|-+...++++-+.+++. ..+++..+.++.+++. |. .+.
T Consensus 480 IpGVKkVrI~SgiR~Dl~l~d~elIeel~~~hV~g~LkVppEH~Sd~VLk~M~Kp~~~~~e~F~e~f~rirk~~gk-~q~ 558 (707)
T PRK01254 480 LKGIKKILIASGVRYDLAVEDPRYVKELVTHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDKYSKEAGK-EQY 558 (707)
T ss_pred CCCceEEEEEcCCCccccccCHHHHHHHHHhCCccccccccccCCHHHHHHhCCCCcccHHHHHHHHHHHHHHCCC-CeE
Confidence 778764555433 11 11 4568888776665 78888999999888888775 3588888888888764 54 444
Q ss_pred EEE---EEecCCCHhHHHHHHHHHhhCCCee-EEEeeecCC
Q 022377 129 VNC---VVMRGFNDDEICDFVELTRDRPINI-RFIEFMPFD 165 (298)
Q Consensus 129 i~~---vi~~~~n~~~i~~i~~~~~~~g~~~-~~~~~~p~~ 165 (298)
+.+ +-+||.+.+++.++++|++++++.. .+.-|.|..
T Consensus 559 LipyfIvGhPGeTeeDf~eLaefLkel~f~~eQVQ~FTPtP 599 (707)
T PRK01254 559 LIPYFISAHPGTTDEDMVNLALWLKKNRFRLDQVQNFYPSP 599 (707)
T ss_pred EEEeEEEECCCCCHHHHHHHHHHHHHhCCCcceeeeeecCC
Confidence 432 3448889999999999999998854 334566654
No 183
>COG1032 Fe-S oxidoreductase [Energy production and conversion]
Probab=96.55 E-value=0.088 Score=49.67 Aligned_cols=94 Identities=21% Similarity=0.335 Sum_probs=76.8
Q ss_pred hHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHH-HHHHHHHcCCCCEEEEE-EEecCCCHhHHHHH---HHHHh
Q 022377 76 KLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVME-SINAAIEVGYNPVKVNC-VVMRGFNDDEICDF---VELTR 150 (298)
Q Consensus 76 ~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~-~i~~l~~~g~~~v~i~~-vi~~~~n~~~i~~i---~~~~~ 150 (298)
.+..+..+|...+.+.+.+.+++.-+.+....+.+.+++ +++.+.+.+. .+.+.+ +-.+|++.+++... ++++.
T Consensus 302 ~~~~~~~~g~~~~~iG~Esgs~~~l~~~~k~~~~~~~~~~a~~~~~~~~~-~~~~~~i~G~pget~ed~~~t~~~~~~~~ 380 (490)
T COG1032 302 LLKLLREAGLRRVYIGIESGSEELLKKINKGITTEEVLEEAVKIAKEHGL-RVKLYFIVGLPGETEEDVKETIELAKFIK 380 (490)
T ss_pred HHHHHhhCCCcceEEeccCCCHHHHHHHhCCCChHHHHHHHHHHHHhCCc-eeeEEEEEcCCCCCHHHHHHHHHHHHHHH
Confidence 567777788999999999999999989888888999995 9999999998 776665 55577888887776 78888
Q ss_pred hCCCe--eEEEeeecCCCCCCc
Q 022377 151 DRPIN--IRFIEFMPFDGNVWN 170 (298)
Q Consensus 151 ~~g~~--~~~~~~~p~~~~~~~ 170 (298)
+.|.. +....++|..++.+.
T Consensus 381 ~~~~~~~~~~~~~~p~p~t~~~ 402 (490)
T COG1032 381 KLGPKLYVSPSPFVPLPGTPLQ 402 (490)
T ss_pred HhCccceEEEeeeeCCCCCchh
Confidence 88886 677788888776543
No 184
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=96.46 E-value=0.21 Score=47.85 Aligned_cols=147 Identities=20% Similarity=0.143 Sum_probs=96.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc--CCCCcEEEEe---C-ccc--h
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL--KGLKTLAMTT---N-GLT--L 73 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~--~~~~~v~i~T---N-G~l--l 73 (298)
+|+|.|.. ...|+.++-.++++.+.+.|+..|-. |=|...++-.+.++.+.+. .+.. +...+ . +.. .
T Consensus 13 LRDG~Q~~--g~~~s~e~Kl~ia~~L~~~Gvd~IEv--G~p~as~~d~~~~~~i~~~~l~~~~-i~~~~~~~~~~i~~~~ 87 (524)
T PRK12344 13 LRDGAQGE--GISFSVEDKLRIARKLDELGVDYIEG--GWPGSNPKDTEFFKRAKELKLKHAK-LAAFGSTRRAGVSAEE 87 (524)
T ss_pred CCCcCcCC--CCCCCHHHHHHHHHHHHHcCCCEEEE--cCCcCChhHHHHHHHHHHhCCCCcE-EEEEeeccccCCCccc
Confidence 46666655 47899999999999999999998887 3466667656667766652 1222 32222 1 111 1
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEE-E---ecCCCHhHHHHHHH
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCV-V---MRGFNDDEICDFVE 147 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~v-i---~~~~n~~~i~~i~~ 147 (298)
+..++.+.+++.+.|.+.+-.-+......++.. ..++.+.+.++.+++.|. .+.+.+. + ++ .+.+.+.++++
T Consensus 88 d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~-~v~~~~e~~~Da~r-~d~~~l~~~~~ 165 (524)
T PRK12344 88 DPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGR-EVIFDAEHFFDGYK-ANPEYALATLK 165 (524)
T ss_pred HHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCC-eEEEcccccccccc-CCHHHHHHHHH
Confidence 345788889999999998876322222333322 237888888999999998 7766543 1 23 45566778888
Q ss_pred HHhhCCCe
Q 022377 148 LTRDRPIN 155 (298)
Q Consensus 148 ~~~~~g~~ 155 (298)
.+.+.|++
T Consensus 166 ~~~~~Gad 173 (524)
T PRK12344 166 AAAEAGAD 173 (524)
T ss_pred HHHhCCCC
Confidence 88888875
No 185
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=96.39 E-value=0.64 Score=41.09 Aligned_cols=142 Identities=13% Similarity=0.112 Sum_probs=95.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh-CC---CC-EEEE-cCCccCcccc------HHHHHHHHhccCCCCcEEEEeCccch
Q 022377 6 VDLTPKPQLLSLNEILRLAYLFVT-SG---VD-KIRL-TGGEPTVRKD------IEEACFHLSKLKGLKTLAMTTNGLTL 73 (298)
Q Consensus 6 ~~~~~~~~~l~~e~~~~~i~~~~~-~~---~~-~v~~-tGGEPll~~~------~~~ii~~~~~~~~~~~v~i~TNG~ll 73 (298)
+-+.......+.|++...++.+.. +. .. .|.+ |-| -||.+. -..|++.+.+...+..+.+.|-.-.+
T Consensus 70 Y~~d~~~~~vs~E~l~~qfd~~~~k~~~~~~~~~vkIFTSG-SFLD~~EVP~e~R~~Il~~is~~~~v~~vvvESRpE~I 148 (358)
T COG1244 70 YPADSAGEPVSEENLINQFDEAYSKYEGKFDEFVVKIFTSG-SFLDPEEVPREARRYILERISENDNVKEVVVESRPEFI 148 (358)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEccc-ccCChhhCCHHHHHHHHHHHhhccceeEEEeecCchhc
Confidence 333333677888887766655443 22 23 4665 444 355432 33777777775456779999998888
Q ss_pred -HhhHHHHHHc--C-CCeEEEecCCCCHHhh-hhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhH---HHHH
Q 022377 74 -ARKLPKLKES--G-LTSVNISLDTLVPAKF-EFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDE---ICDF 145 (298)
Q Consensus 74 -~~~~~~l~~~--~-~~~v~iSldg~~~~~~-~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~---i~~i 145 (298)
++.++.+.+. | ...|.|.|.+.++++- +.|..+-+|+..+++++.++++|+ .+....++-| .-..+ |+++
T Consensus 149 ~eE~l~e~~~il~gk~~EvaIGLETanD~ire~sINKGftF~df~~A~~~ir~~g~-~vktYlllKP-~FlSE~eAI~D~ 226 (358)
T COG1244 149 REERLEEITEILEGKIVEVAIGLETANDKIREDSINKGFTFEDFVRAAEIIRNYGA-KVKTYLLLKP-PFLSEKEAIEDV 226 (358)
T ss_pred CHHHHHHHHHhhCCceEEEEEecccCcHHHHHHhhhcCCcHHHHHHHHHHHHHcCC-ceeEEEEecc-cccChHHHHHHH
Confidence 5688888764 3 4569999999877644 566676779999999999999999 7777766665 33333 5555
Q ss_pred HHHHh
Q 022377 146 VELTR 150 (298)
Q Consensus 146 ~~~~~ 150 (298)
+.-+.
T Consensus 227 i~Si~ 231 (358)
T COG1244 227 ISSIV 231 (358)
T ss_pred HHHHH
Confidence 55444
No 186
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=96.25 E-value=0.74 Score=40.50 Aligned_cols=178 Identities=12% Similarity=0.073 Sum_probs=103.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCC--CcEEEEeCccchHhhHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGL--KTLAMTTNGLTLARKLPK 79 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~--~~v~i~TNG~ll~~~~~~ 79 (298)
||+|.|.. +..+|.++-.++++.+.+.|+..|-+. =|-+.+.-.++++.+.+. +. ..+.+..=.......++.
T Consensus 9 lRDG~Q~~--g~~~s~~~Ki~ia~~L~~~Gv~~IE~g--fP~~~~~e~e~~~~i~~~-~~~~~~~~~~al~r~~~~die~ 83 (284)
T cd07942 9 LRDGNQAL--AEPMSVEQKLRFFKLLVKIGFKEIEVG--FPSASQTDFDFVRELIEE-DLIPDDVTIQVLTQAREDLIER 83 (284)
T ss_pred CCCcCCCC--CCCCCHHHHHHHHHHHHHcCCCEEEEe--CCCCCHHHHHHHHHHHHc-cCCCCCCEEEEEcCCChhhHHH
Confidence 68887766 568999999999999999999988765 399988877888888553 22 012232111112333556
Q ss_pred HHHc--CCC--eEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCC---EEEEEEEec----CCCHhHHHHHH
Q 022377 80 LKES--GLT--SVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNP---VKVNCVVMR----GFNDDEICDFV 146 (298)
Q Consensus 80 l~~~--~~~--~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~---v~i~~vi~~----~~n~~~i~~i~ 146 (298)
..++ +++ .|.+.+-.-+.-...+++.. ...+.+.+.++.+++.|. + ..+.+.+.. ..+.+.+.+++
T Consensus 84 a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~-~~~~~~~~~~~~~EDasr~~~~~l~~~~ 162 (284)
T cd07942 84 TFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAA-KYPETDWRFEYSPESFSDTELDFALEVC 162 (284)
T ss_pred HHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcc-cccCceEEEEECCccCCCCCHHHHHHHH
Confidence 6555 554 58777766322222233322 126777778888888876 3 123333332 14556688888
Q ss_pred HHHhhC---CCe-eEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 147 ELTRDR---PIN-IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 147 ~~~~~~---g~~-~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
+.+.+. |++ +..+.+...-+.. .+....+++..+.+.++
T Consensus 163 ~~~~~~~~~g~~~~~~i~laDTvG~a----~P~~v~~~~~~l~~~~~ 205 (284)
T cd07942 163 EAVIDVWQPTPENKIILNLPATVEVA----TPNVYADQIEWFCRNLS 205 (284)
T ss_pred HHHHHhhcCCCCcceEEEcccccccc----CHHHHHHHHHHHHHhcC
Confidence 877665 332 2234443322211 11234555566665553
No 187
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=96.23 E-value=0.54 Score=44.59 Aligned_cols=157 Identities=15% Similarity=0.156 Sum_probs=105.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCc--cC----ccccHHHHHHHHhcc-CCCCcEEEEeCcc-----------ch
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGE--PT----VRKDIEEACFHLSKL-KGLKTLAMTTNGL-----------TL 73 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE--Pl----l~~~~~~ii~~~~~~-~~~~~v~i~TNG~-----------ll 73 (298)
...|+.++...++..+.+.|+..|-..||- +- ++.+=.+.++.+++. .+. .+.+...|. .+
T Consensus 21 atr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~Edpwerlr~lr~~~~nt-~lqmL~Rg~N~vGy~~y~ddvv 99 (499)
T PRK12330 21 ATRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLNEDPWERLRTFRKLMPNS-RLQMLLRGQNLLGYRHYEDEVV 99 (499)
T ss_pred CccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCC-eEEEEEcccccCCccCcchhHH
Confidence 467999999999999999999999998876 42 444545666666552 345 377777765 22
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEE--EEEecCCCHhHHHHHHHHHhh
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN--CVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~--~vi~~~~n~~~i~~i~~~~~~ 151 (298)
...++...++|++.+.|. |+.+. .+.+...++.+++.|. .+... +++.+-.+.+.+.++++-+.+
T Consensus 100 ~~fv~~a~~~Gidi~RIf-d~lnd-----------v~nl~~ai~~vk~ag~-~~~~~i~yt~sp~~t~e~~~~~a~~l~~ 166 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVF-DALND-----------PRNLEHAMKAVKKVGK-HAQGTICYTVSPIHTVEGFVEQAKRLLD 166 (499)
T ss_pred HHHHHHHHHcCCCEEEEE-ecCCh-----------HHHHHHHHHHHHHhCC-eEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 346778888899998888 44332 2566667788888887 66444 355665677888888888888
Q ss_pred CCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 152 RPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 152 ~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
.|++ .+.+...-+-. .+....++...+++.+
T Consensus 167 ~Gad--~I~IkDtaGll----~P~~~~~LV~~Lk~~~ 197 (499)
T PRK12330 167 MGAD--SICIKDMAALL----KPQPAYDIVKGIKEAC 197 (499)
T ss_pred cCCC--EEEeCCCccCC----CHHHHHHHHHHHHHhC
Confidence 8885 33333322210 1123456666777665
No 188
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=96.15 E-value=0.46 Score=41.65 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=101.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCcc-----C-ccccHHHHHHHHhcc-CCCCcEEEEeCcc-----------ch
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEP-----T-VRKDIEEACFHLSKL-KGLKTLAMTTNGL-----------TL 73 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEP-----l-l~~~~~~ii~~~~~~-~~~~~v~i~TNG~-----------ll 73 (298)
+..++.++..+++..+.+.|+..|-+.+|-- . +..+-.+.++.+.+. .+.+ +...+.+. ..
T Consensus 15 ~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~-l~~~~r~~~~~~~~~~p~~~~ 93 (275)
T cd07937 15 ATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTP-LQMLLRGQNLVGYRHYPDDVV 93 (275)
T ss_pred ceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCc-eehhcccccccCccCCCcHHH
Confidence 5579999999999999999999988875431 1 233334555555542 2232 44444431 13
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE--ecCCCHhHHHHHHHHHhh
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV--MRGFNDDEICDFVELTRD 151 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi--~~~~n~~~i~~i~~~~~~ 151 (298)
.+.++...+.+++.|.|+... ++ ++.+.+.++.+++.|. .+.+.... ....+.+.+.++++.+.+
T Consensus 94 ~~di~~~~~~g~~~iri~~~~-~~-----------~~~~~~~i~~ak~~G~-~v~~~i~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
T cd07937 94 ELFVEKAAKNGIDIFRIFDAL-ND-----------VRNLEVAIKAVKKAGK-HVEGAICYTGSPVHTLEYYVKLAKELED 160 (275)
T ss_pred HHHHHHHHHcCCCEEEEeecC-Ch-----------HHHHHHHHHHHHHCCC-eEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 457888888899999997644 21 6789999999999998 77654432 223677889999999999
Q ss_pred CCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 152 RPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 152 ~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
.|++. +.+....+.. .+....++...+.+.+
T Consensus 161 ~Ga~~--i~l~DT~G~~----~P~~v~~lv~~l~~~~ 191 (275)
T cd07937 161 MGADS--ICIKDMAGLL----TPYAAYELVKALKKEV 191 (275)
T ss_pred cCCCE--EEEcCCCCCC----CHHHHHHHHHHHHHhC
Confidence 88752 3333322221 1223455666666655
No 189
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=96.13 E-value=0.62 Score=43.17 Aligned_cols=176 Identities=18% Similarity=0.205 Sum_probs=113.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCC-cEEEEeCccchHhhHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLK-TLAMTTNGLTLARKLPKL 80 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~-~v~i~TNG~ll~~~~~~l 80 (298)
+|+|.|.. +..||.|+-.+++..+.++|+..|- .|=|-..+.-.+.++.+....++. ...+.+--...++.++.+
T Consensus 10 LRDG~Q~~--g~~~s~e~Ki~Ia~~Ld~lGv~~IE--~g~p~~s~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~ 85 (409)
T COG0119 10 LRDGEQAP--GVSFSVEEKIRIAKALDDLGVDYIE--AGFPVASPGDFEFVRAIAEKAGLFICALIAALARAIKRDIEAL 85 (409)
T ss_pred CCcCCcCC--CCcCCHHHHHHHHHHHHHcCCCEEE--EeCCcCChhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHH
Confidence 45655544 6789999999999999999977655 466777777777777766322330 011111111224578999
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCeeE
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNC-VVMRGFNDDEICDFVELTRDRPINIR 157 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~~~ 157 (298)
+.++.+.|.+-+.+.+--...+++.. ..++++.+.++.+++.|+ .+.... ..++ .+.+.+.++++.+...|+.
T Consensus 86 ~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~-~~~~~~Ed~~r-t~~~~l~~~~~~~~~~ga~-- 161 (409)
T COG0119 86 LEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGL-EVRFSAEDATR-TDPEFLAEVVKAAIEAGAD-- 161 (409)
T ss_pred HhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEeecccc-CCHHHHHHHHHHHHHcCCc--
Confidence 99999999998887433222233322 238888999999999998 776544 3344 6788899999988877764
Q ss_pred EEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 158 FIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 158 ~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
.+.+...-+. ..+..+.++.+.+.+..+
T Consensus 162 ~i~l~DTvG~----~~P~~~~~~i~~l~~~v~ 189 (409)
T COG0119 162 RINLPDTVGV----ATPNEVADIIEALKANVP 189 (409)
T ss_pred EEEECCCcCc----cCHHHHHHHHHHHHHhCC
Confidence 2333322111 122345677777777664
No 190
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=95.67 E-value=0.98 Score=43.00 Aligned_cols=175 Identities=16% Similarity=0.116 Sum_probs=103.4
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccC--------CCCcEEEEeCccch
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLK--------GLKTLAMTTNGLTL 73 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~--------~~~~v~i~TNG~ll 73 (298)
+|+|.|.. +..++.++-.++++.+.+.|+..|-. |=|-..++-.+.++.+.+.. ++. ..+.+=+...
T Consensus 92 LRDGeQ~~--gv~fs~eeKi~Ia~~L~~~GVd~IEv--G~Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~-~~i~a~~R~~ 166 (503)
T PLN03228 92 LRDGEQSP--GGSLTPPQKLEIARQLAKLRVDIMEV--GFPGSSEEEFEAVKTIAKTVGNEVDEETGYV-PVICGIARCK 166 (503)
T ss_pred CCCCCCCC--CCCCCHHHHHHHHHHHHHcCCCEEEE--eCCCCCHHHHHHHHHHHHhcccccccccccc-eEEeeecccC
Confidence 45655554 56799999999999999999987766 44888887666677665421 111 2222112122
Q ss_pred HhhHHHHHHc----CCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCC-EEEEE-EEecCCCHhHHHHH
Q 022377 74 ARKLPKLKES----GLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNP-VKVNC-VVMRGFNDDEICDF 145 (298)
Q Consensus 74 ~~~~~~l~~~----~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~-v~i~~-vi~~~~n~~~i~~i 145 (298)
.+.++...++ +.+.|.+.+-.-+.....+++.. ..++.+.+.++.+++.|. . +.+.+ -.++ .+.+.+.++
T Consensus 167 ~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~-~~v~f~~EDa~R-td~efl~~~ 244 (503)
T PLN03228 167 KRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGF-HDIQFGCEDGGR-SDKEFLCKI 244 (503)
T ss_pred HhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-ceEEeccccccc-cCHHHHHHH
Confidence 2334444443 67788888777422222333332 237888889999999987 5 44444 2223 445667888
Q ss_pred HHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 146 VELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 146 ~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
++.+.+.|++ .+.+....+.. .+....++.+.+.+.++
T Consensus 245 ~~~a~~~Gad--~I~l~DTvG~~----tP~~v~~lV~~l~~~~~ 282 (503)
T PLN03228 245 LGEAIKAGAT--SVGIADTVGIN----MPHEFGELVTYVKANTP 282 (503)
T ss_pred HHHHHhcCCC--EEEEecCCCCC----CHHHHHHHHHHHHHHhc
Confidence 8888888875 23333322211 11234556666665553
No 191
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=95.30 E-value=1.6 Score=37.15 Aligned_cols=136 Identities=15% Similarity=0.127 Sum_probs=91.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcccc--HHHHHHHHhccCCCCcEEEEeCccchH---------hhHHHHH
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTNGLTLA---------RKLPKLK 81 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~~v~i~TNG~ll~---------~~~~~l~ 81 (298)
+-+++..+..+++.+..+ +..+.|.||--.+.|. +.+.++.++++ ++ .+.|-|++++ +.++..+
T Consensus 7 kgl~~~~~~d~Le~~g~y-ID~lKfg~Gt~~l~~~~~l~eki~la~~~-~V---~v~~GGtl~E~~~~q~~~~~Yl~~~k 81 (237)
T TIGR03849 7 KGLPPKFVEDYLKVCGDY-ITFVKFGWGTSALIDRDIVKEKIEMYKDY-GI---KVYPGGTLFEIAHSKGKFDEYLNECD 81 (237)
T ss_pred CCCCHHHHHHHHHHhhhh-eeeEEecCceEeeccHHHHHHHHHHHHHc-CC---eEeCCccHHHHHHHhhhHHHHHHHHH
Confidence 346888888888877665 6789999999999986 66999999886 65 4677787653 3456888
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecC-----CCHhHHHHHHHHHhhCCCee
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRG-----FNDDEICDFVELTRDRPINI 156 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~-----~n~~~i~~i~~~~~~~g~~~ 156 (298)
+.|++.|-|| ||.-+ -+.+.-++.|+.+++.|+ .+...+=.... ...++..+.++...+.|+..
T Consensus 82 ~lGf~~IEiS-~G~~~---------i~~~~~~rlI~~~~~~g~-~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ 150 (237)
T TIGR03849 82 ELGFEAVEIS-DGSME---------ISLEERCNLIERAKDNGF-MVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADY 150 (237)
T ss_pred HcCCCEEEEc-CCccC---------CCHHHHHHHHHHHHhCCC-eEeccccccCCcccccCCHHHHHHHHHHHHHCCCcE
Confidence 8999999999 55321 246778889999999888 44333211110 12233333334446678865
Q ss_pred EEEeeecC
Q 022377 157 RFIEFMPF 164 (298)
Q Consensus 157 ~~~~~~p~ 164 (298)
..++-.-.
T Consensus 151 ViiEarEs 158 (237)
T TIGR03849 151 VIIEGRES 158 (237)
T ss_pred EEEeehhc
Confidence 55544333
No 192
>PLN02321 2-isopropylmalate synthase
Probab=95.22 E-value=1 Score=44.09 Aligned_cols=149 Identities=15% Similarity=0.075 Sum_probs=86.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc--CCCC---c-EEEEeCccchHh
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL--KGLK---T-LAMTTNGLTLAR 75 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~--~~~~---~-v~i~TNG~ll~~ 75 (298)
+|+|.|.. ...|+.|+-.++++.+.+.|+..|-. |=|...|+=.+.++.+.+. .++. . ..|..=+....+
T Consensus 94 LRDGeQ~~--g~~~s~eeKl~Ia~~L~~lGVd~IEv--GfP~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~~ 169 (632)
T PLN02321 94 LRDGEQSP--GATLTSKEKLDIARQLAKLGVDIIEA--GFPIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNKK 169 (632)
T ss_pred CCccccCC--CCCCCHHHHHHHHHHHHHcCCCEEEE--eCcCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccHH
Confidence 56766655 45599999999999999999988877 6788887644446666442 1111 0 112222222233
Q ss_pred hHHHHHHc----CCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEE-EecCCCHhHHHHHHHH
Q 022377 76 KLPKLKES----GLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCV-VMRGFNDDEICDFVEL 148 (298)
Q Consensus 76 ~~~~l~~~----~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~v-i~~~~n~~~i~~i~~~ 148 (298)
.++...++ ....|.+.+-..+--....++.. ..++.+.+.++.+++.|...+.+.+- ..+ .+.+.+.++++.
T Consensus 170 dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~r-td~d~l~~~~~~ 248 (632)
T PLN02321 170 DIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGR-SDPEFLYRILGE 248 (632)
T ss_pred hHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCCC-CCHHHHHHHHHH
Confidence 34444443 22357777655321122223221 22677777888888887622444432 223 456677788887
Q ss_pred HhhCCCe
Q 022377 149 TRDRPIN 155 (298)
Q Consensus 149 ~~~~g~~ 155 (298)
+.+.|++
T Consensus 249 a~~aGa~ 255 (632)
T PLN02321 249 VIKAGAT 255 (632)
T ss_pred HHHcCCC
Confidence 7777764
No 193
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=94.95 E-value=1.8 Score=41.36 Aligned_cols=147 Identities=17% Similarity=0.107 Sum_probs=91.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc-CCCCcEEEEeCc--cchHhhHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTLAMTTNG--LTLARKLP 78 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~-~~~~~v~i~TNG--~ll~~~~~ 78 (298)
+|+|.|.. +..|+.++-.++++.+.+.|+..|-. |=|-..+.=.+.++.+.+. .+. .+...+-+ ..++..++
T Consensus 9 LRDG~Q~~--g~~~s~e~K~~ia~~L~~~GV~~IEv--G~p~~s~~d~e~v~~i~~~~~~~-~i~al~r~~~~did~a~~ 83 (494)
T TIGR00973 9 LRDGEQSP--GASLTVEEKLQIALALERLGVDIIEA--GFPVSSPGDFEAVQRIARTVKNP-RVCGLARCVEKDIDAAAE 83 (494)
T ss_pred CCccCcCC--CCCcCHHHHHHHHHHHHHcCCCEEEE--ECCCCCHHHHHHHHHHHHhCCCC-EEEEEcCCCHHhHHHHHH
Confidence 46666655 45699999999999999999988764 4455544333444655432 222 23332221 11223344
Q ss_pred HHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCEEEEEE-EecCCCHhHHHHHHHHHhhCCCe
Q 022377 79 KLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPVKVNCV-VMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 79 ~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v~i~~v-i~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
.+..++.+.|.+.+-..+.....+++.. ...+.+.+.++.+++.|. .+.+..- .++ .+.+.+.++++.+.+.|++
T Consensus 84 al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~-~v~f~~Ed~~r-~d~~~l~~~~~~~~~~Ga~ 161 (494)
T TIGR00973 84 ALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTD-DVEFSCEDAGR-TEIPFLARIVEAAINAGAT 161 (494)
T ss_pred hccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-eEEEEcCCCCC-CCHHHHHHHHHHHHHcCCC
Confidence 4555577888888877432222233322 126777788889999888 6666653 233 5667788888888888874
No 194
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=94.89 E-value=0.41 Score=40.92 Aligned_cols=155 Identities=16% Similarity=0.175 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccCcccc--HHHHHHHHhccCCCCcEEEEeCccchH---------hhHHHHHHc
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTNGLTLA---------RKLPKLKES 83 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~~v~i~TNG~ll~---------~~~~~l~~~ 83 (298)
|++..+..+++.+..+ +..+.|.+|--.+.|. +.+.++.++++ + |.+.|-|+++. +.++.+++.
T Consensus 22 lg~~~~~dlLe~ag~y-ID~~K~g~Gt~~l~~~~~l~eki~l~~~~-g---V~v~~GGtl~E~a~~q~~~~~yl~~~k~l 96 (244)
T PF02679_consen 22 LGLRYLEDLLESAGDY-IDFLKFGWGTSALYPEEILKEKIDLAHSH-G---VYVYPGGTLFEVAYQQGKFDEYLEECKEL 96 (244)
T ss_dssp --HHHHHHHHHHHGGG--SEEEE-TTGGGGSTCHHHHHHHHHHHCT-T----EEEE-HHHHHHHHHTT-HHHHHHHHHHC
T ss_pred CCHHHHHHHHHHhhhh-ccEEEecCceeeecCHHHHHHHHHHHHHc-C---CeEeCCcHHHHHHHhcChHHHHHHHHHHc
Confidence 8999999999987766 7899999999999987 77999999986 5 55789998753 457888889
Q ss_pred CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCH--------hHHHHHHHHHhhCCCe
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFND--------DEICDFVELTRDRPIN 155 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~--------~~i~~i~~~~~~~g~~ 155 (298)
|++.|-|| ||.-+ -+.+.-.+.|+.+++.|+ .|... +.+ .+. +++.+.++...+.|..
T Consensus 97 Gf~~IEiS-dGti~---------l~~~~r~~~I~~~~~~Gf-~v~~E--vG~-K~~~~~~~~~~~~~i~~~~~dLeAGA~ 162 (244)
T PF02679_consen 97 GFDAIEIS-DGTID---------LPEEERLRLIRKAKEEGF-KVLSE--VGK-KDPESDFSLDPEELIEQAKRDLEAGAD 162 (244)
T ss_dssp T-SEEEE---SSS------------HHHHHHHHHHHCCTTS-EEEEE--ES--SSHHHHTT--CCHHHHHHHHHHHHTEC
T ss_pred CCCEEEec-CCcee---------CCHHHHHHHHHHHHHCCC-EEeec--ccC-CCchhcccCCHHHHHHHHHHHHHCCCC
Confidence 99999999 66322 135667788999999988 54333 333 222 2333333333445776
Q ss_pred eEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 156 IRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 156 ~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
...++-.-.|........-.-..++++.|....
T Consensus 163 ~ViiEarEsG~~Gi~~~~g~~r~d~v~~i~~~~ 195 (244)
T PF02679_consen 163 KVIIEARESGKGGIYDNDGEVRTDLVEKIIERL 195 (244)
T ss_dssp EEEE--TTT--STTB-TTS-B-HHHHHHHHTTS
T ss_pred EEEEeeeccCCCCccCCCCCccHHHHHHHHHhC
Confidence 555544433322222211122345555665554
No 195
>PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function.; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B ....
Probab=94.64 E-value=0.39 Score=42.01 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=85.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEc-----CCccCccccHH-HHHHHHhcc-CCCCcEEEEeCccch---HhhHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLT-----GGEPTVRKDIE-EACFHLSKL-KGLKTLAMTTNGLTL---ARKLPKLK 81 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~t-----GGEPll~~~~~-~ii~~~~~~-~~~~~v~i~TNG~ll---~~~~~~l~ 81 (298)
.-.+|+||+.+-..+..+.|...|+++ .|.|.+.++.. ++++.+++. .++- +.++|.+... .+++..+.
T Consensus 20 ~lP~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~i-v~~Ttg~~~~~~~~~R~~~v~ 98 (272)
T PF05853_consen 20 ALPITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLI-VQPTTGGGGGPDPEERLAHVE 98 (272)
T ss_dssp TS--SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSE-EEEESSTTTTSGHHHHCTHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeE-EEeCCCCCCCCCHHHHHHHHH
Confidence 345899999988888888898877775 48899999855 999999997 6884 8888887433 23444444
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCC
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPI 154 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~ 154 (298)
....+..++++-+.+-...+.. -..+...+.+.++.+++.|+ .+++.+ ++...+..+..++.+ |+
T Consensus 99 ~~~pd~asl~~gs~n~~~~~~~-~~n~~~~~~~~~~~~~e~Gi-~pe~ev-----~d~~~l~~~~~l~~~-G~ 163 (272)
T PF05853_consen 99 AWKPDMASLNPGSMNFGTRDRV-YINTPADARELARRMRERGI-KPEIEV-----FDPGHLRNARRLIEK-GL 163 (272)
T ss_dssp HH--SEEEEE-S-EEESGGCSE-E---HHHHHHHHHHHHHTT--EEEEEE-----SSHHHHHHHHHHHHT-TS
T ss_pred hcCCCeEEecccccccccCCce-ecCCHHHHHHHHHHHHHcCC-eEEEEE-----EcHHHHHHHHHHHHC-CC
Confidence 3357777776655432211111 12458899999999999999 776655 577788888777665 55
No 196
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=94.50 E-value=3.2 Score=39.10 Aligned_cols=130 Identities=15% Similarity=0.171 Sum_probs=89.7
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccC------ccccHHHHHHHHhcc-CCCCcEEEEeCccc-----------h
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT------VRKDIEEACFHLSKL-KGLKTLAMTTNGLT-----------L 73 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl------l~~~~~~ii~~~~~~-~~~~~v~i~TNG~l-----------l 73 (298)
...|+.+++..+...+.+.|+..+-..||--+ ++.+=.+-++.+++. ++.. +.+..-|.. .
T Consensus 29 atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~-lqmLlRG~n~vgy~~ypddvv 107 (468)
T PRK12581 29 ATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTR-LQMLLRGQNLLGYRHYADDIV 107 (468)
T ss_pred ccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCc-eeeeeccccccCccCCcchHH
Confidence 45599999999999999999999999988633 223333455555442 3443 555555632 1
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEE--EEEecCCCHhHHHHHHHHHhh
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN--CVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~--~vi~~~~n~~~i~~i~~~~~~ 151 (298)
...++...+.|++.+.|- |..+ ..+.+...++.+++.|. .+.+. .+..|.++.+.+.++++.+.+
T Consensus 108 ~~fv~~a~~~Gidi~Rif-d~ln-----------d~~n~~~ai~~ak~~G~-~~~~~i~yt~sp~~t~~y~~~~a~~l~~ 174 (468)
T PRK12581 108 DKFISLSAQNGIDVFRIF-DALN-----------DPRNIQQALRAVKKTGK-EAQLCIAYTTSPVHTLNYYLSLVKELVE 174 (468)
T ss_pred HHHHHHHHHCCCCEEEEc-ccCC-----------CHHHHHHHHHHHHHcCC-EEEEEEEEEeCCcCcHHHHHHHHHHHHH
Confidence 234777788899977765 5443 35678889999999998 75444 455565667778888888888
Q ss_pred CCCe
Q 022377 152 RPIN 155 (298)
Q Consensus 152 ~g~~ 155 (298)
.|++
T Consensus 175 ~Gad 178 (468)
T PRK12581 175 MGAD 178 (468)
T ss_pred cCCC
Confidence 8875
No 197
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=93.23 E-value=1.9 Score=37.32 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=99.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcC--CccCcc---ccHHHHHHHHhcc-CCCCcEEEEeCccchH-hhHHHHHHcCC
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTG--GEPTVR---KDIEEACFHLSKL-KGLKTLAMTTNGLTLA-RKLPKLKESGL 85 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tG--GEPll~---~~~~~ii~~~~~~-~~~~~v~i~TNG~ll~-~~~~~l~~~~~ 85 (298)
..+.++.-.. .+++.|+..|.+|- -+-|-. .++.+-++++++. ..+. |...|--+.=+ +.++.+..+|+
T Consensus 140 Dp~EPeNTAe---AIasWgl~YiVlTSVDRDDlpDgGa~HiAkTVq~iK~k~p~il-vE~L~pDF~Gd~~~Ve~va~SGL 215 (360)
T KOG2672|consen 140 DPNEPENTAE---AIASWGLDYIVLTSVDRDDLPDGGANHIAKTVQKIKEKAPEIL-VECLTPDFRGDLKAVEKVAKSGL 215 (360)
T ss_pred CCCCcccHHH---HHHHcCCCeEEEEecccccCcCcchHHHHHHHHHHHhhCcccc-hhhcCccccCchHHHHHHHhcCc
Confidence 3444554444 44567888999874 333332 3477889988874 2332 44434332222 46899999999
Q ss_pred CeEEEecCCCCHHhhhhhcCC-CcHHHHHHHHHHHHHcCCCCE--EEEEEEecCCCHhHHHHHHHHHhhCCCeeEEE-ee
Q 022377 86 TSVNISLDTLVPAKFEFLTRR-KGHEKVMESINAAIEVGYNPV--KVNCVVMRGFNDDEICDFVELTRDRPINIRFI-EF 161 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~-~~~~~v~~~i~~l~~~g~~~v--~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~-~~ 161 (298)
|...-.+.+. ++....+|.. .+|..-+..++.+++..- .+ +..+++.-|++++++.+.++-+...++++... +|
T Consensus 216 DV~AHNvETV-e~Ltp~VRD~RA~yrQSL~VLk~aK~~~P-~litktsiMlglgetdeei~~tl~dLr~~~vdv~t~gqy 293 (360)
T KOG2672|consen 216 DVYAHNVETV-EELTPFVRDPRANYRQSLSVLKHAKEVKP-GLITKTSIMLGLGETDEEIKQTLKDLRAADVDVVTFGQY 293 (360)
T ss_pred cceecchhhH-HhcchhhcCcccchHHhHHHHHHHHhhCC-CceehhhhhhccCCCHHHHHHHHHHHHHcCCcEEecccc
Confidence 9988888886 5666666643 459999999999998743 32 23334445688999999999999999876444 66
Q ss_pred ecCCCC
Q 022377 162 MPFDGN 167 (298)
Q Consensus 162 ~p~~~~ 167 (298)
|+....
T Consensus 294 m~ptkr 299 (360)
T KOG2672|consen 294 MQPTKR 299 (360)
T ss_pred cCCccc
Confidence 654433
No 198
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=93.05 E-value=5 Score=34.07 Aligned_cols=115 Identities=6% Similarity=0.003 Sum_probs=74.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc--CCc--cCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEe
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLT--GGE--PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~t--GGE--Pll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iS 91 (298)
+.-.+.+-++++.+.|+..+++- -|. |-+... .++++.+++...+ .+.+-++ .-.+.++.+.++|.+.|.|.
T Consensus 23 d~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfG-p~~i~~i~~~~~~-DvHLMv~--~P~~~i~~~~~aGad~It~H 98 (228)
T PRK08091 23 NWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVG-AIAIKQFPTHCFK-DVHLMVR--DQFEVAKACVAAGADIVTLQ 98 (228)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccC-HHHHHHhCCCCCE-EEEeccC--CHHHHHHHHHHhCCCEEEEc
Confidence 44566777888888888877764 354 432221 1444444432233 2443222 13457999999999998888
Q ss_pred cCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH
Q 022377 92 LDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 92 ldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
..+. ....+.|+.+++.|. ++....++.|+...+.++.+++.+
T Consensus 99 ~Ea~--------------~~~~~~l~~Ik~~g~-~~kaGlalnP~Tp~~~i~~~l~~v 141 (228)
T PRK08091 99 VEQT--------------HDLALTIEWLAKQKT-TVLIGLCLCPETPISLLEPYLDQI 141 (228)
T ss_pred ccCc--------------ccHHHHHHHHHHCCC-CceEEEEECCCCCHHHHHHHHhhc
Confidence 7752 135567788889998 888899999976666676666543
No 199
>PF11946 DUF3463: Domain of unknown function (DUF3463); InterPro: IPR022563 This functionally uncharacterised domain is found in bacteria and archaea, which is about 140 amino acids in length and is found C-terminal to PF04055 from PFAM. It contains two conserved sequence motifs: CTPWG and PCYL. This domain is associated with hopanoid biosynthesis associated radical SAM proteins.
Probab=92.77 E-value=0.023 Score=43.57 Aligned_cols=62 Identities=16% Similarity=0.089 Sum_probs=43.7
Q ss_pred CCccccCCCCeEEEecccceeecCCCCCCCCcchHhhcCCCHHHHHHHHHHHHHhhhhhccCcccccccccccccccc
Q 022377 220 MTEHFCAGCNRLRLLADGNFKVCLFGPSEVSLRDPLRQNASDDELREIIGAAVKRKKAAHAGMFDIAKTANRPMIHIG 297 (298)
Q Consensus 220 ~~~~~C~~~~~~~I~~dG~v~pC~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (298)
.....|..+....+++.|...||...++.+ -..++|+|...-|.+.- .--|.-|..| |.|||
T Consensus 55 ~~~~~CtPWg~pt~n~~Gwq~PCYLl~egy-----------~~tfkeLme~t~We~Yg---~g~~prC~~C--m~hcG 116 (138)
T PF11946_consen 55 NRDYECTPWGNPTRNPFGWQKPCYLLNEGY-----------AGTFKELMETTDWEKYG---VGRDPRCANC--MVHCG 116 (138)
T ss_pred CCCCcccCCCCCccCccccccCCEEecCcc-----------hhHHHHHHHCCChHhhC---CCCCCCHHHH--HHHhc
Confidence 334569999999999999999998665332 24688888888887765 2233355555 66666
No 200
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=92.45 E-value=0.93 Score=32.71 Aligned_cols=84 Identities=27% Similarity=0.353 Sum_probs=52.3
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCEEEEcCCccCccccHHHHHHHHhccCCC--CcEEEEeCccchHhhH
Q 022377 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVT-SGVDKIRLTGGEPTVRKDIEEACFHLSKLKGL--KTLAMTTNGLTLARKL 77 (298)
Q Consensus 1 ~~~~~~~~~~~~~~l~~e~~~~~i~~~~~-~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~--~~v~i~TNG~ll~~~~ 77 (298)
.|.+|..+......++.+++.+++.-+.- +.-..|.++||++.+.++.....-.+-.. .+ ....++|+|....+.+
T Consensus 6 ~P~~gTp~~~~~~~~~~~~~l~~ia~~Rl~~P~~~I~~~~gr~~~~~~~~~~~l~aGan-~~~~G~~~lt~~g~~~~~d~ 84 (94)
T smart00876 6 RPIEGTPLEDPPPPVSPEEFLRTIAAARLALPDAGIRLSTGREALLRDLQALCFSAGAN-SIFGGDKYLTTSGPRSADDV 84 (94)
T ss_pred ccCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCcceEEecCCchhcchHHHHhhhccCc-eeeeCCccccCCCcCcHHHH
Confidence 36777666543367999999999886544 33358889999998888755332121111 11 1115678887776656
Q ss_pred HHHHHcCC
Q 022377 78 PKLKESGL 85 (298)
Q Consensus 78 ~~l~~~~~ 85 (298)
+.+.+.|.
T Consensus 85 ~~i~~~g~ 92 (94)
T smart00876 85 AMLEKLGL 92 (94)
T ss_pred HHHHHcCC
Confidence 66665553
No 201
>PRK03739 2-isopropylmalate synthase; Validated
Probab=91.60 E-value=9.3 Score=37.04 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCC---C-cEEEEeCc-cc-hHh
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGL---K-TLAMTTNG-LT-LAR 75 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~---~-~v~i~TNG-~l-l~~ 75 (298)
+|+|.|.. +..++.++=.++++.+.+.|+..|-.. =|-+.+.-.++++.+.+. ++ . .+...+-. .- ++.
T Consensus 38 LRDGeQ~~--gv~~s~~~Ki~ia~~L~~~GV~~IE~G--fP~~s~~e~e~v~~i~~~-~~~~~~~~i~~l~r~~~~di~~ 112 (552)
T PRK03739 38 LRDGNQAL--IEPMSPERKLRMFDLLVKIGFKEIEVG--FPSASQTDFDFVRELIEE-GLIPDDVTIQVLTQAREHLIER 112 (552)
T ss_pred CCCcCcCC--CCCCCHHHHHHHHHHHHHcCCCEEEEE--CCCcChHHHHHHHHHHHh-cCCCCCCEEEEEeccchhHHHH
Confidence 56666654 568999999999999999999877665 398988877888887553 22 1 12211111 11 122
Q ss_pred hHHHHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCC--CEEEEEEEecC----CCHhHHHHHHH
Q 022377 76 KLPKLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYN--PVKVNCVVMRG----FNDDEICDFVE 147 (298)
Q Consensus 76 ~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~--~v~i~~vi~~~----~n~~~i~~i~~ 147 (298)
.++.+...+...|.+.+-.-+.-...+++.. ...+.+.+.++.++++|.. ...+.+.+... .+.+.+.++++
T Consensus 113 a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~ 192 (552)
T PRK03739 113 TFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCD 192 (552)
T ss_pred HHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHH
Confidence 3334434444568888777432222233322 1267777788888877641 11244444432 34566777777
Q ss_pred HHhh
Q 022377 148 LTRD 151 (298)
Q Consensus 148 ~~~~ 151 (298)
.+.+
T Consensus 193 ~a~~ 196 (552)
T PRK03739 193 AVID 196 (552)
T ss_pred HHHH
Confidence 7655
No 202
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=91.34 E-value=15 Score=35.85 Aligned_cols=157 Identities=12% Similarity=0.098 Sum_probs=102.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccC------ccccHHHHHHHHhcc-CCCCcEEEEeCccch-----------
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT------VRKDIEEACFHLSKL-KGLKTLAMTTNGLTL----------- 73 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl------l~~~~~~ii~~~~~~-~~~~~v~i~TNG~ll----------- 73 (298)
...|+.+++..++..+.+.|+..+-+.||--| ++-+=++.++.+++. ++.. +.+..-|..+
T Consensus 20 atr~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rfl~edpwerl~~~r~~~pnt~-lqmL~Rg~N~vGy~~~~d~vv 98 (596)
T PRK14042 20 ATRMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRFLKEDPWSRLRQLRQALPNTQ-LSMLLRGQNLLGYRNYADDVV 98 (596)
T ss_pred hcCCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecccCCCHHHHHHHHHHhCCCCc-eEEEeccccccccccCChHHH
Confidence 45799999999999999999999999988755 233334555555542 3453 6666644322
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE--EEecCCCHhHHHHHHHHHhh
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC--VVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~--vi~~~~n~~~i~~i~~~~~~ 151 (298)
...++...+.|++.+.|- |+.+ ..+.....++.+++.|. .+...+ +..+-++.+.+.++++.+.+
T Consensus 99 ~~~v~~a~~~Gidv~Rif-d~ln-----------d~~n~~~~i~~~k~~G~-~~~~~i~yt~sp~~t~e~~~~~ak~l~~ 165 (596)
T PRK14042 99 RAFVKLAVNNGVDVFRVF-DALN-----------DARNLKVAIDAIKSHKK-HAQGAICYTTSPVHTLDNFLELGKKLAE 165 (596)
T ss_pred HHHHHHHHHcCCCEEEEc-ccCc-----------chHHHHHHHHHHHHcCC-EEEEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 125677788899977764 5543 24567778999999998 776664 44555677888888888888
Q ss_pred CCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 152 RPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 152 ~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
.|++ .+.+....+.. .+....++...+++.+
T Consensus 166 ~Gad--~I~IkDtaG~l----~P~~v~~lv~alk~~~ 196 (596)
T PRK14042 166 MGCD--SIAIKDMAGLL----TPTVTVELYAGLKQAT 196 (596)
T ss_pred cCCC--EEEeCCcccCC----CHHHHHHHHHHHHhhc
Confidence 8885 33333332210 1123455666666654
No 203
>PRK12999 pyruvate carboxylase; Reviewed
Probab=90.81 E-value=22 Score=37.74 Aligned_cols=157 Identities=16% Similarity=0.183 Sum_probs=103.5
Q ss_pred CCCCCHHHHHHHHHHHHhC--CCCEEEEcCCc------cCccccHHHHHHHHhcc-CCCCcEEEEeCcc-----------
Q 022377 12 PQLLSLNEILRLAYLFVTS--GVDKIRLTGGE------PTVRKDIEEACFHLSKL-KGLKTLAMTTNGL----------- 71 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~--~~~~v~~tGGE------Pll~~~~~~ii~~~~~~-~~~~~v~i~TNG~----------- 71 (298)
...|+.++...+...+.+. |+..+-..||- ++++.+=.+.++.+++. .+.. +.+..-|.
T Consensus 549 atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~-~q~l~Rg~n~vgy~~yp~~ 627 (1146)
T PRK12999 549 ATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVL-FQMLLRGSNAVGYTNYPDN 627 (1146)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCe-EEEEecccccccccCCCch
Confidence 5679999999999999999 99999988873 66666655666666552 3453 66666653
Q ss_pred chHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEe-------c-CCCHhHHH
Q 022377 72 TLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVM-------R-GFNDDEIC 143 (298)
Q Consensus 72 ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~-------~-~~n~~~i~ 143 (298)
...+.++...++|++.+.|. |+.+. .+.+...++.+++.|. ...+.+.++ + .++.+.+.
T Consensus 628 v~~~~i~~a~~~Gid~~rif-d~lnd-----------~~~~~~~i~~vk~~g~-~~~~~i~ytg~~~d~~~~~~~~~~~~ 694 (1146)
T PRK12999 628 VVRAFVREAAAAGIDVFRIF-DSLNW-----------VENMRVAIDAVRETGK-IAEAAICYTGDILDPARAKYDLDYYV 694 (1146)
T ss_pred HHHHHHHHHHHcCCCEEEEe-ccCCh-----------HHHHHHHHHHHHHcCC-eEEEEEEEEecCCCCCCCCCCHHHHH
Confidence 22345788889999999997 55432 3456777888888886 555555555 1 14667777
Q ss_pred HHHHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 144 DFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 144 ~i~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
++++-+.+.|++ .+.+....+- . .+....++...+++.+
T Consensus 695 ~~a~~l~~~Ga~--~i~ikDt~G~-l---~P~~~~~lv~~lk~~~ 733 (1146)
T PRK12999 695 DLAKELEKAGAH--ILAIKDMAGL-L---KPAAAYELVSALKEEV 733 (1146)
T ss_pred HHHHHHHHcCCC--EEEECCccCC-C---CHHHHHHHHHHHHHHc
Confidence 888878888875 3333333221 0 1123456666676655
No 204
>PRK15452 putative protease; Provisional
Probab=90.74 E-value=6 Score=37.16 Aligned_cols=112 Identities=12% Similarity=0.102 Sum_probs=73.3
Q ss_pred HhCCCCEEEEcCC--------ccCccccHHHHHHHHhccCCCCcEEEEeCccchHh-------hHHHHHHcCCCeEEEec
Q 022377 28 VTSGVDKIRLTGG--------EPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLAR-------KLPKLKESGLTSVNISL 92 (298)
Q Consensus 28 ~~~~~~~v~~tGG--------EPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~-------~~~~l~~~~~~~v~iSl 92 (298)
...|...|.+.|. .++-..++.+.++++++. |.+ +.+++|....++ .++.+.+.++|.|.|+
T Consensus 20 i~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~-g~k-vyvt~n~i~~e~el~~~~~~l~~l~~~gvDgvIV~- 96 (443)
T PRK15452 20 FAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHAL-GKK-FYVVVNIAPHNAKLKTFIRDLEPVIAMKPDALIMS- 96 (443)
T ss_pred HHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHc-CCE-EEEEecCcCCHHHHHHHHHHHHHHHhCCCCEEEEc-
Confidence 4578888888442 244445688999999884 885 999999755432 2567778899999998
Q ss_pred CCCCHHhhhhhcCC-------CcH---HHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH
Q 022377 93 DTLVPAKFEFLTRR-------KGH---EKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 93 dg~~~~~~~~ir~~-------~~~---~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
+......++.. .++ -.--.+++.+.+.|+. ++|+.+..|.++|.+|.+-.
T Consensus 97 ---d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~----rvvLSrELsl~EI~~i~~~~ 156 (443)
T PRK15452 97 ---DPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLT----RVILSRELSLEEIEEIRQQC 156 (443)
T ss_pred ---CHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCc----EEEECCcCCHHHHHHHHhhC
Confidence 23323222221 011 1123466778888882 55888878889999887544
No 205
>PRK14847 hypothetical protein; Provisional
Probab=90.62 E-value=13 Score=33.58 Aligned_cols=140 Identities=12% Similarity=-0.008 Sum_probs=81.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCC---C-cEEEEeCccc--hHhhHHHHHHcCC
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGL---K-TLAMTTNGLT--LARKLPKLKESGL 85 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~---~-~v~i~TNG~l--l~~~~~~l~~~~~ 85 (298)
+..||.++=.++...+.++|+..|-. |=|-...+-.+.++.+.+. +. . .+...+-+.- ++..++.....+.
T Consensus 48 Gv~fs~eeKl~IA~~L~~lGVd~IEv--G~Pa~s~~e~e~ir~I~~~-~~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~ 124 (333)
T PRK14847 48 IEPMDGARKLRLFEQLVAVGLKEIEV--AFPSASQTDFDFVRKLIDE-RRIPDDVTIEALTQSRPDLIARTFEALAGSPR 124 (333)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEe--eCCCCCHHHHHHHHHHHHh-CCCCCCcEEEEEecCcHHHHHHHHHHhCCCCC
Confidence 45799999999999999999887654 5677777767777777653 31 1 1333333311 1234444444455
Q ss_pred CeEEEecCCCCHHhhhhhcCCC--cHHHHHHHHHHHHHcCCC----CEEEEEEEecC--CCHhHHHHHHHHHhh-CCC
Q 022377 86 TSVNISLDTLVPAKFEFLTRRK--GHEKVMESINAAIEVGYN----PVKVNCVVMRG--FNDDEICDFVELTRD-RPI 154 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~--~~~~v~~~i~~l~~~g~~----~v~i~~vi~~~--~n~~~i~~i~~~~~~-~g~ 154 (298)
..|.+++-+-+-....+++... -.+.+.+.++.+++.+.. .+.+.+..-.. ...+.+.++++.+.+ .|.
T Consensus 125 ~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDasRad~dfL~~~~~~a~~~~ga 202 (333)
T PRK14847 125 AIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFSLAELDFAREVCDAVSAIWGP 202 (333)
T ss_pred CEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCCCCCHHHHHHHHHHHHHHhCC
Confidence 6799998874222222333221 166677788888887430 23344443321 234556667776533 354
No 206
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=90.57 E-value=12 Score=36.38 Aligned_cols=147 Identities=10% Similarity=0.045 Sum_probs=83.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccC----CCCcEE-EEeCccc-hHh
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLK----GLKTLA-MTTNGLT-LAR 75 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~----~~~~v~-i~TNG~l-l~~ 75 (298)
||+|.|.. ...|+.++=.++++.+.+.|+..|-.. =|-..+.=.+.+..+.+.. +.. +. +.-|-.- ++.
T Consensus 34 LRDG~Q~~--g~~~s~e~Ki~ia~~L~~~Gvd~IE~G--fp~~s~~D~e~v~~i~~~~l~~~~~~-i~al~~~~~~did~ 108 (564)
T TIGR00970 34 LRDGNQAL--PDPMSPARKRRYFDLLVRIGFKEIEVG--FPSASQTDFDFVREIIEQGAIPDDVT-IQVLTQSREELIER 108 (564)
T ss_pred CCccccCC--CCCCCHHHHHHHHHHHHHcCCCEEEEe--CCCCCHHHHHHHHHHHHhcCCCCCcE-EEEEcCCchhhHHH
Confidence 56766664 567999999999999999999877754 4444443344555554421 221 22 2222111 223
Q ss_pred hHHHHHHcCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCC------EEEEEEEecC----CCHhHHH
Q 022377 76 KLPKLKESGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNP------VKVNCVVMRG----FNDDEIC 143 (298)
Q Consensus 76 ~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~------v~i~~vi~~~----~n~~~i~ 143 (298)
.++.+...+...|.+.+-+-+.-....++.. ...+.+.+.++.+++++. . ..+.+.+... .+.+.+.
T Consensus 109 a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~-~~~~~~~~~~~v~f~~Ed~~r~d~~~l~ 187 (564)
T TIGR00970 109 TFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTK-QAAKYPGTQWRFEYSPESFSDTELEFAK 187 (564)
T ss_pred HHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcc-cccccccceEEEEEecccCCCCCHHHHH
Confidence 3444444444568888776322222223322 126677777777887764 2 1223444432 3567788
Q ss_pred HHHHHHhhCCC
Q 022377 144 DFVELTRDRPI 154 (298)
Q Consensus 144 ~i~~~~~~~g~ 154 (298)
++++.+.+.|.
T Consensus 188 ~~~~~a~~ag~ 198 (564)
T TIGR00970 188 EVCEAVKEVWA 198 (564)
T ss_pred HHHHHHHHhCC
Confidence 88888888875
No 207
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=89.92 E-value=0.34 Score=34.96 Aligned_cols=78 Identities=27% Similarity=0.427 Sum_probs=43.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccc-------
Q 022377 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVT-SGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLT------- 72 (298)
Q Consensus 1 ~~~~~~~~~~~~~~l~~e~~~~~i~~~~~-~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~l------- 72 (298)
+|.+|.-+ .+...++.+++.+++..+.- +.-..|.++|||+....++..+... .+. .++.+.+++
T Consensus 6 ~P~~Gtpl-~~~~~l~~~e~lr~ia~~Rl~~P~a~I~la~gr~~~~~~~~~~~~~----sg~--n~~~~G~ylt~~g~~~ 78 (93)
T PF06968_consen 6 RPIPGTPL-EDPPPLSDEEFLRIIAAFRLLLPEAGIRLAGGREALLRDLQPLTFM----SGA--NSIMVGGYLTTSGNRS 78 (93)
T ss_dssp ---TTSTT-TTS----HHHHHHHHHHHHHHSTTSEEEEECCHHHCSCCHHHHHHC----CT----EEE-CSBTSSSCTSH
T ss_pred EeCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCcceEeecCccccCHHHHHHHHh----ccc--ceeEECCccccCCCCC
Confidence 46666666 56778999999999886544 3345899999998877775553222 233 344455543
Q ss_pred hHhhHHHHHHcCC
Q 022377 73 LARKLPKLKESGL 85 (298)
Q Consensus 73 l~~~~~~l~~~~~ 85 (298)
.++.++.+.+.|.
T Consensus 79 ~~~d~~~i~~lG~ 91 (93)
T PF06968_consen 79 VDEDIEMIEKLGL 91 (93)
T ss_dssp HHHHHHHHHHTT-
T ss_pred HHHHHHHHHHcCC
Confidence 3445666666553
No 208
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=89.46 E-value=2.1 Score=38.13 Aligned_cols=108 Identities=15% Similarity=0.194 Sum_probs=71.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchH---hhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~---~~~~~l~~ 82 (298)
+..++.+.+.++++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +-+-+.+..+. +..+...+
T Consensus 23 ~g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvp-vi~Gv~~~~t~~ai~~a~~A~~ 101 (309)
T cd00952 23 TDTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVP-VFVGATTLNTRDTIARTRALLD 101 (309)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCC-EEEEeccCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999977 99 777665 44555544432 1342 44444333343 35566677
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVN 130 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~ 130 (298)
.|.+.+.+.--. |- ..+-+.+++-.+.+.++ ++ ++.+.
T Consensus 102 ~Gad~vlv~~P~-----y~----~~~~~~l~~yf~~va~a~~~l-Pv~iY 141 (309)
T cd00952 102 LGADGTMLGRPM-----WL----PLDVDTAVQFYRDVAEAVPEM-AIAIY 141 (309)
T ss_pred hCCCEEEECCCc-----CC----CCCHHHHHHHHHHHHHhCCCC-cEEEE
Confidence 899988887432 11 12347777777777764 36 66553
No 209
>COG0007 CysG Uroporphyrinogen-III methylase [Coenzyme metabolism]
Probab=89.42 E-value=1.6 Score=37.23 Aligned_cols=58 Identities=22% Similarity=0.302 Sum_probs=48.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEE
Q 022377 8 LTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMT 67 (298)
Q Consensus 8 ~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~ 67 (298)
..+....++.+++.+++-++.+.|...|.+-||+|++...-.+-++.+.+. |+. +.+.
T Consensus 58 kr~g~~~~~q~eIn~~lv~~a~~G~~VVRLKgGDP~iFGRggEE~~~l~~~-gI~-~eVV 115 (244)
T COG0007 58 KRPGGHSKPQDEINALLVELAREGKRVVRLKGGDPYIFGRGGEEIEALAEA-GIE-FEVV 115 (244)
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCeEEEecCCCCCeecCcHHHHHHHHHc-CCc-eEEe
Confidence 344446799999999998888889889999999999999988888888885 986 7775
No 210
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=89.14 E-value=12 Score=31.32 Aligned_cols=134 Identities=18% Similarity=0.157 Sum_probs=90.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeC---ccchH----hhHHH
Q 022377 7 DLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN---GLTLA----RKLPK 79 (298)
Q Consensus 7 ~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TN---G~ll~----~~~~~ 79 (298)
+.+-=+...|.+++.++++++.++++..|++ +|.+..+++...+..++. +..+.+ |.... ..++.
T Consensus 7 D~t~L~p~~t~~~i~~lc~~A~~~~~~avcv-------~p~~v~~a~~~l~~~~v~-v~tVigFP~G~~~~~~K~~E~~~ 78 (211)
T TIGR00126 7 DHTALKADTTEEDIITLCAQAKTYKFAAVCV-------NPSYVPLAKELLKGTEVR-ICTVVGFPLGASTTDVKLYETKE 78 (211)
T ss_pred eccCCCCCCCHHHHHHHHHHHHhhCCcEEEe-------CHHHHHHHHHHcCCCCCe-EEEEeCCCCCCCcHHHHHHHHHH
Confidence 3444567899999999999999999988887 567776665543323554 554432 33321 13566
Q ss_pred HHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeE
Q 022377 80 LKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIR 157 (298)
Q Consensus 80 l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~ 157 (298)
..+.|.+.|-+-++-. .+. .+.++.+.+-|+.+.+. |. ++++-.-... .+.+++....+.+.+.|.++.
T Consensus 79 Av~~GAdEiDvv~n~g------~l~-~g~~~~v~~ei~~i~~~~~g~-~lKvIlE~~~-L~~~ei~~a~~ia~eaGADfv 149 (211)
T TIGR00126 79 AIKYGADEVDMVINIG------ALK-DGNEEVVYDDIRAVVEACAGV-LLKVIIETGL-LTDEEIRKACEICIDAGADFV 149 (211)
T ss_pred HHHcCCCEEEeecchH------hhh-CCcHHHHHHHHHHHHHHcCCC-eEEEEEecCC-CCHHHHHHHHHHHHHhCCCEE
Confidence 6777999888887642 111 25688888888888874 56 6666332222 566788899999999998743
No 211
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=88.39 E-value=1 Score=38.00 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEec
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISL 92 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSl 92 (298)
..|++||+..++.+..+.|-..+.+.-|+|.++.-+.+=++.+.+. |+. +.++-.=+.+.-....| . +.+.+
T Consensus 57 a~~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA~~EQm~~L~~~-gI~-yevvPGVss~~AAAA~L-----~-~ELT~ 128 (254)
T COG2875 57 ASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIYGALAEQMRELEAL-GIP-YEVVPGVSSFAAAAAAL-----G-IELTV 128 (254)
T ss_pred CcCCHHHHHHHHHHHHHcCCeEEEeecCChhHHHHHHHHHHHHHHc-CCC-eEEeCCchHHHHHHHHh-----C-ceeec
Confidence 5699999999999999999889999999999999999999999984 996 77743332222222222 1 33444
Q ss_pred CCCCHH-hhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCC----eeEEEeeecCCCC
Q 022377 93 DTLVPA-KFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPI----NIRFIEFMPFDGN 167 (298)
Q Consensus 93 dg~~~~-~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~----~~~~~~~~p~~~~ 167 (298)
.+.... ..-+..++ +--.--+.+..|.+.+. .+++.- ..+.++++++-+..=|. ++. -+.+.
T Consensus 129 P~vsQtvilTR~sgr-t~vpe~e~l~~la~~~a-----Tm~I~L--~v~~I~~vv~~L~~g~y~~dtPVa-----VV~rA 195 (254)
T COG2875 129 PGVSQTVILTRPSGR-TPVPEKESLAALAKHGA-----TMVIFL--GVHAIDKVVEELLEGGYPPDTPVA-----VVYRA 195 (254)
T ss_pred CCcceeEEEEccccC-CCCCchhHHHHHHhcCc-----eeEeee--hhhHHHHHHHHHhcCCCCCCCCEE-----EEEec
Confidence 443211 00111121 11123455666666665 334442 35667777776554111 111 12345
Q ss_pred CCcccCC--CCHHHHHHHHHHh
Q 022377 168 VWNVKKL--VPYAEMLDTVVKK 187 (298)
Q Consensus 168 ~~~~~~~--~~~~e~~~~i~~~ 187 (298)
.|..+.. -+.+++.+++++.
T Consensus 196 sWpDe~ii~GTL~dIa~kv~~~ 217 (254)
T COG2875 196 SWPDEKIIRGTLEDIAEKVKEA 217 (254)
T ss_pred CCCcccEEEeeHHHHHHHHHhc
Confidence 6655443 3467777777654
No 212
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=88.31 E-value=6.3 Score=34.97 Aligned_cols=107 Identities=17% Similarity=0.229 Sum_probs=69.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhccC--CCCcEEEEeCccchHh---hHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKLK--GLKTLAMTTNGLTLAR---KLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~~--~~~~v~i~TNG~ll~~---~~~~l~~ 82 (298)
+..++.+.+.++++.+.+.|+..|.+.| || |+|..+ -.++++.+.+.- .+. +-.-+.+..+.+ ..+...+
T Consensus 19 dg~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvp-viaG~g~~~t~eai~lak~a~~ 97 (299)
T COG0329 19 DGSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVP-VIAGVGSNSTAEAIELAKHAEK 97 (299)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCc-EEEecCCCcHHHHHHHHHHHHh
Confidence 3669999999999999999999999976 99 888765 445666555532 332 444455544543 4566677
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
.|.+.+.+.--.+. ..+.+-+.+-++.+.+. +. ++.+
T Consensus 98 ~Gad~il~v~PyY~---------k~~~~gl~~hf~~ia~a~~l-Pvil 135 (299)
T COG0329 98 LGADGILVVPPYYN---------KPSQEGLYAHFKAIAEAVDL-PVIL 135 (299)
T ss_pred cCCCEEEEeCCCCc---------CCChHHHHHHHHHHHHhcCC-CEEE
Confidence 89997777643321 12345566666666553 55 4443
No 213
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=88.23 E-value=16 Score=31.54 Aligned_cols=118 Identities=14% Similarity=0.112 Sum_probs=57.2
Q ss_pred HHHHHHHHHhCCCCEEEEcC-CccCcccc-HHHHHHHHhccCCCCcEEE-EeCccchHhhHH----HHHHcCCCeEEEec
Q 022377 20 ILRLAYLFVTSGVDKIRLTG-GEPTVRKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKLP----KLKESGLTSVNISL 92 (298)
Q Consensus 20 ~~~~i~~~~~~~~~~v~~tG-GEPll~~~-~~~ii~~~~~~~~~~~v~i-~TNG~ll~~~~~----~l~~~~~~~v~iSl 92 (298)
+...++.+++.|. .|.|+- -.+-..++ +.++++.+.+. |...+.+ .|.|...++.+. .+++ ... +.|++
T Consensus 112 ~~~~i~~a~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~i~l~DT~G~~~P~~v~~lv~~l~~-~~~-~~l~~ 187 (259)
T cd07939 112 LRRLVGRAKDRGL-FVSVGAEDASRADPDFLIEFAEVAQEA-GADRLRFADTVGILDPFTTYELIRRLRA-ATD-LPLEF 187 (259)
T ss_pred HHHHHHHHHHCCC-eEEEeeccCCCCCHHHHHHHHHHHHHC-CCCEEEeCCCCCCCCHHHHHHHHHHHHH-hcC-CeEEE
Confidence 4456666666774 455432 11122344 44777777663 5544443 478877765443 3333 233 55666
Q ss_pred CCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec-CC--CHhHHHHHHHHHhhC-CC
Q 022377 93 DTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR-GF--NDDEICDFVELTRDR-PI 154 (298)
Q Consensus 93 dg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~-~~--n~~~i~~i~~~~~~~-g~ 154 (298)
++.+ ++...+.|.-.+.++|+.. +.+++.- |. ---.+++++..+..+ |+
T Consensus 188 H~Hn-----------~~Gla~An~laAi~aG~~~--vd~s~~G~G~~aGN~~tE~lv~~l~~~~g~ 240 (259)
T cd07939 188 HAHN-----------DLGLATANTLAAVRAGATH--VSVTVNGLGERAGNAALEEVVMALKHLYGR 240 (259)
T ss_pred EecC-----------CCChHHHHHHHHHHhCCCE--EEEecccccccccCcCHHHHHHHHHHhcCC
Confidence 6532 1224445555555677732 3333331 11 012355566655554 55
No 214
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=88.13 E-value=2.7 Score=37.07 Aligned_cols=109 Identities=16% Similarity=0.230 Sum_probs=71.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchH---hhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~---~~~~~l~ 81 (298)
++..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +...+.+..+. +.++...
T Consensus 15 ~dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~-vi~gv~~~~~~~~i~~a~~a~ 93 (292)
T PRK03170 15 EDGSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVP-VIAGTGSNSTAEAIELTKFAE 93 (292)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCc-EEeecCCchHHHHHHHHHHHH
Confidence 45689999999999999999999999876 88 777665 33555544432 1343 44444443343 4567777
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
+.|.+.+.+.--.. + ..+-+.+++-.+.+.+. ++ ++.+.
T Consensus 94 ~~G~d~v~~~pP~~----~-----~~~~~~i~~~~~~ia~~~~~-pv~lY 133 (292)
T PRK03170 94 KAGADGALVVTPYY----N-----KPTQEGLYQHFKAIAEATDL-PIILY 133 (292)
T ss_pred HcCCCEEEECCCcC----C-----CCCHHHHHHHHHHHHhcCCC-CEEEE
Confidence 88999888864332 1 12346677777777664 56 66554
No 215
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=87.92 E-value=19 Score=32.05 Aligned_cols=110 Identities=19% Similarity=0.139 Sum_probs=73.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHh-CC-CCEEEEcCCccCc-ccc-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHH
Q 022377 7 DLTPKPQLLSLNEILRLAYLFVT-SG-VDKIRLTGGEPTV-RKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKE 82 (298)
Q Consensus 7 ~~~~~~~~l~~e~~~~~i~~~~~-~~-~~~v~~tGGEPll-~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~ 82 (298)
+...++..++.+++..+++++.+ .. ...|.++|-=|=- .++ +.++++.+++. +.. +.+.|.|-.|. ...+
T Consensus 103 ein~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~-g~~-vilD~Sg~~L~----~~L~ 176 (310)
T COG1105 103 EINFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQ-GAK-VILDTSGEALL----AALE 176 (310)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhc-CCe-EEEECChHHHH----HHHc
Confidence 34556788999999999999988 43 3468888977544 445 55999999995 885 99999996654 3334
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCC--CcHHHHHHHHHHHHHcCCCCE
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRR--KGHEKVMESINAAIEVGYNPV 127 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~--~~~~~v~~~i~~l~~~g~~~v 127 (298)
++..-|--. .+|.. .+-+. .+.+.+++..+.+++.|+.+|
T Consensus 177 ~~P~lIKPN----~~EL~-~~~g~~~~~~~d~i~~a~~l~~~g~~~V 218 (310)
T COG1105 177 AKPWLIKPN----REELE-ALFGRELTTLEDVIKAARELLAEGIENV 218 (310)
T ss_pred cCCcEEecC----HHHHH-HHhCCCCCChHHHHHHHHHHHHCCCCEE
Confidence 443322211 23333 33332 236688888888999998433
No 216
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=87.62 E-value=18 Score=31.42 Aligned_cols=114 Identities=14% Similarity=0.233 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccCcc-cc-HHHHHHHHhccCCCCcEEE-EeCccchHhhH----HHHHHcCCCeEEEec
Q 022377 20 ILRLAYLFVTSGVDKIRLTGGEPTVR-KD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKL----PKLKESGLTSVNISL 92 (298)
Q Consensus 20 ~~~~i~~~~~~~~~~v~~tGGEPll~-~~-~~~ii~~~~~~~~~~~v~i-~TNG~ll~~~~----~~l~~~~~~~v~iSl 92 (298)
+.++++.+.+.| ..|.++.-.-+-. ++ +.++++.+.+. |...+.+ .|.|...++.+ ..+++ ..+ +.|++
T Consensus 114 ~~~~i~~a~~~G-~~v~~~~eda~r~~~~~l~~~~~~~~~~-g~~~i~l~Dt~G~~~P~~v~~~~~~~~~-~~~-~~i~~ 189 (262)
T cd07948 114 AVEVIEFVKSKG-IEVRFSSEDSFRSDLVDLLRVYRAVDKL-GVNRVGIADTVGIATPRQVYELVRTLRG-VVS-CDIEF 189 (262)
T ss_pred HHHHHHHHHHCC-CeEEEEEEeeCCCCHHHHHHHHHHHHHc-CCCEEEECCcCCCCCHHHHHHHHHHHHH-hcC-CeEEE
Confidence 445556666666 3455543222211 33 45777777774 6544443 58888776543 34443 233 66666
Q ss_pred CCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec-C--CCHhHHHHHHHHHh
Q 022377 93 DTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR-G--FNDDEICDFVELTR 150 (298)
Q Consensus 93 dg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~-~--~n~~~i~~i~~~~~ 150 (298)
+..+ ++.-.+.|.-.+.++|+.. +.+++.- | .-...++.++..+.
T Consensus 190 H~Hn-----------~~Gla~an~~~a~~aG~~~--vd~s~~GlGeraGn~~~e~~~~~l~ 237 (262)
T cd07948 190 HGHN-----------DTGCAIANAYAALEAGATH--IDTTVLGIGERNGITPLGGLIARMY 237 (262)
T ss_pred EECC-----------CCChHHHHHHHHHHhCCCE--EEEeccccccccCCccHHHHHHHHH
Confidence 6632 2234555666666778732 3443331 1 11124555655554
No 217
>PLN02417 dihydrodipicolinate synthase
Probab=87.10 E-value=3.5 Score=36.21 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=69.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHH
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKL 80 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l 80 (298)
.++..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +...+.+..+.+ ..+..
T Consensus 14 ~~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~p-vi~gv~~~~t~~~i~~a~~a 92 (280)
T PLN02417 14 LPDGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIK-VIGNTGSNSTREAIHATEQG 92 (280)
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCc-EEEECCCccHHHHHHHHHHH
Confidence 346789999999999999999999999987 99 777654 34555554432 2343 555555444443 45666
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcC
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG 123 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g 123 (298)
.+.|.+.+.+.- |. |. ..+-+.+++-++.+.+..
T Consensus 93 ~~~Gadav~~~~----P~-y~----~~~~~~i~~~f~~va~~~ 126 (280)
T PLN02417 93 FAVGMHAALHIN----PY-YG----KTSQEGLIKHFETVLDMG 126 (280)
T ss_pred HHcCCCEEEEcC----Cc-cC----CCCHHHHHHHHHHHHhhC
Confidence 778999777753 22 21 124567777777777764
No 218
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=86.84 E-value=8.3 Score=35.40 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHH-HHHHHHhccCCCCcEEEEeCccc-h-HhhHHHHHHcCCCeEEE
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLT-L-ARKLPKLKESGLTSVNI 90 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~l-l-~~~~~~l~~~~~~~v~i 90 (298)
.=+.+.+.++.+++.++|+..|+|--=-=+|.|.-. ++|+.+++..++. +.+.|..+. + ....-+-.++|+|.|-.
T Consensus 152 vHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~~p-v~lHtH~TsG~a~m~ylkAvEAGvD~iDT 230 (472)
T COG5016 152 VHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPVP-VELHTHATSGMAEMTYLKAVEAGVDGIDT 230 (472)
T ss_pred cccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcCCe-eEEecccccchHHHHHHHHHHhCcchhhh
Confidence 457889999999999999999999643337888754 9999999977885 888877653 2 33455667789887665
Q ss_pred ecCC
Q 022377 91 SLDT 94 (298)
Q Consensus 91 Sldg 94 (298)
.+-.
T Consensus 231 Aisp 234 (472)
T COG5016 231 AISP 234 (472)
T ss_pred hhcc
Confidence 5543
No 219
>PRK14057 epimerase; Provisional
Probab=86.78 E-value=20 Score=31.00 Aligned_cols=115 Identities=10% Similarity=0.008 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEc--CCc--cCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEE
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLT--GGE--PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 90 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~t--GGE--Pll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~i 90 (298)
.++-.+.+-++++.+.|+..+++- -|. |-+... .++++.+++...+ .+.+-+. .-.+.++.+.++|.+.|.|
T Consensus 29 aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfG-p~~i~~i~~~~p~-DvHLMV~--~P~~~i~~~~~aGad~It~ 104 (254)
T PRK14057 29 GQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVG-PWAVGQLPQTFIK-DVHLMVA--DQWTAAQACVKAGAHCITL 104 (254)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccC-HHHHHHhccCCCe-eEEeeeC--CHHHHHHHHHHhCCCEEEE
Confidence 344567788888888888877764 454 533221 1344444432223 2443322 1345789999999999998
Q ss_pred ecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCC-------EEEEEEEecCCCHhHHHHHHHH
Q 022377 91 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNP-------VKVNCVVMRGFNDDEICDFVEL 148 (298)
Q Consensus 91 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~-------v~i~~vi~~~~n~~~i~~i~~~ 148 (298)
...+.. ...+.|+.+++.|. + +....++.|+...+.++.+++.
T Consensus 105 H~Ea~~--------------~~~~~l~~Ir~~G~-k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~ 154 (254)
T PRK14057 105 QAEGDI--------------HLHHTLSWLGQQTV-PVIGGEMPVIRGISLCPATPLDVIIPILSD 154 (254)
T ss_pred eecccc--------------CHHHHHHHHHHcCC-CcccccccceeEEEECCCCCHHHHHHHHHh
Confidence 887531 23456667777776 3 4567788886556666666653
No 220
>PRK15447 putative protease; Provisional
Probab=86.50 E-value=16 Score=32.37 Aligned_cols=124 Identities=15% Similarity=0.111 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCc-----cCccccHHHHHHHHhccCCCCcEEEEeCccch-Hh---hHHHHHHcCCC
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTGGE-----PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-AR---KLPKLKESGLT 86 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tGGE-----Pll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~---~~~~l~~~~~~ 86 (298)
+......+...+.+.|+..|.+.+.. ++...++.++++.+++. |.+ +.++||..+. ++ .+..+.+.+.+
T Consensus 13 p~~~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~-gkk-vyva~p~i~~~~~e~~~l~~~l~~~~~ 90 (301)
T PRK15447 13 PKETVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAA-GKE-VVLSTLALVEAPSELKELRRLVENGEF 90 (301)
T ss_pred CCCCHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHc-CCE-EEEEecccccCHHHHHHHHHHHhcCCC
Confidence 33445566666677787787776321 35556788999999984 885 9999999754 43 35556666656
Q ss_pred eEEEecCCCCHHhhhhhc--CCC---cHH---HHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH
Q 022377 87 SVNISLDTLVPAKFEFLT--RRK---GHE---KVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir--~~~---~~~---~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
.|.++ +......++ +.. ++. ---.+++.+.+.|.. ++|+.+..|.+||.++.+..
T Consensus 91 ~v~v~----d~g~l~~~~e~~~~l~~d~~lni~N~~a~~~l~~~G~~----rv~ls~ELsl~eI~~i~~~~ 153 (301)
T PRK15447 91 LVEAN----DLGAVRLLAERGLPFVAGPALNCYNAATLALLARLGAT----RWCMPVELSRDWLANLLAQC 153 (301)
T ss_pred EEEEe----CHHHHHHHHhcCCCEEEecccccCCHHHHHHHHHcCCc----EEEECCcCCHHHHHHHHHhc
Confidence 55543 232222222 110 111 112356666777762 45777777888888876654
No 221
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=86.20 E-value=5.1 Score=35.12 Aligned_cols=106 Identities=15% Similarity=0.202 Sum_probs=69.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhccCCCCcEEEEeCccchH---hhHHHHHHcCC
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLA---RKLPKLKESGL 85 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~---~~~~~l~~~~~ 85 (298)
..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+..+ . +-..+.+..+. +..+...+.|.
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~-~-vi~gvg~~~~~~ai~~a~~a~~~Ga 92 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITD-K-VIFQVGSLNLEESIELARAAKSFGI 92 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcC-C-EEEEeCcCCHHHHHHHHHHHHHcCC
Confidence 789999999999999999999999987 99 888765 4466665554322 1 33333333343 35667777899
Q ss_pred CeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEE
Q 022377 86 TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN 130 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~ 130 (298)
+.+.+---.+ +. ..+-+.+.+-.+.+.+ .+ ++.+.
T Consensus 93 d~v~v~~P~y----~~----~~~~~~i~~yf~~v~~-~l-pv~iY 127 (279)
T cd00953 93 YAIASLPPYY----FP----GIPEEWLIKYFTDISS-PY-PTFIY 127 (279)
T ss_pred CEEEEeCCcC----CC----CCCHHHHHHHHHHHHh-cC-CEEEE
Confidence 9777653321 11 1134566666677766 77 66553
No 222
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=85.89 E-value=7.7 Score=33.87 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=73.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +...+.+..+.+ ..+...
T Consensus 11 ~dg~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~-vi~gv~~~~~~~~i~~a~~a~ 89 (281)
T cd00408 11 ADGEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVP-VIAGVGANSTREAIELARHAE 89 (281)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCe-EEEecCCccHHHHHHHHHHHH
Confidence 45689999999999999999999999877 99 666654 44666555442 1343 555555544543 456677
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
+.|.+.+.+.--.. + . .+-+.+++-++.+.+. ++ ++.+.
T Consensus 90 ~~Gad~v~v~pP~y----~-~----~~~~~~~~~~~~ia~~~~~-pi~iY 129 (281)
T cd00408 90 EAGADGVLVVPPYY----N-K----PSQEGIVAHFKAVADASDL-PVILY 129 (281)
T ss_pred HcCCCEEEECCCcC----C-C----CCHHHHHHHHHHHHhcCCC-CEEEE
Confidence 78999888854321 1 1 3456777777777774 55 55543
No 223
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=85.72 E-value=12 Score=33.67 Aligned_cols=137 Identities=19% Similarity=0.166 Sum_probs=88.8
Q ss_pred CCHHHHHHHHHHHHhCC--CCEEEEc--CCccCcccc-----HH-HHHHHHhcc-----------------CCCCcEEEE
Q 022377 15 LSLNEILRLAYLFVTSG--VDKIRLT--GGEPTVRKD-----IE-EACFHLSKL-----------------KGLKTLAMT 67 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~--~~~v~~t--GGEPll~~~-----~~-~ii~~~~~~-----------------~~~~~v~i~ 67 (298)
-+.++...-+++++++| +..|.|. ||.=+.-|. |+ .+-+.+.-+ +-+ -++|.
T Consensus 150 dP~~QaR~Rv~QLk~LGHsvDKVE~i~MGGTFMsLPe~YRd~FI~nLHdALSGhts~~v~EAv~yse~s~tKCi-GiTIE 228 (554)
T KOG2535|consen 150 DPYLQARGRVEQLKQLGHSVDKVEFIVMGGTFMSLPEEYRDYFIRNLHDALSGHTSANVEEAVKYSERSLTKCI-GITIE 228 (554)
T ss_pred CHHHHHHHHHHHHHHhCCccceeEEEEecceeecChHHHHHHHHHHHHHHhcCCCccCHHHHHHhhhhccceee-eEEee
Confidence 45667777889999987 5566653 665443343 22 332222111 112 24566
Q ss_pred eCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC---HhHHH
Q 022377 68 TNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN---DDEIC 143 (298)
Q Consensus 68 TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n---~~~i~ 143 (298)
|-.-.. ...+..+...|...+.|.+.+.-++.-+.-.++.....+-+.+...+++|+ +|...++-.- .| ..+++
T Consensus 229 TRPDyC~~~Hl~~ML~YGCTRlEiGVQS~YEDVARDTNRGHTV~aVce~F~laKDaG~-KvV~HMMPdL-PNVg~eRDie 306 (554)
T KOG2535|consen 229 TRPDYCLKRHLSDMLTYGCTRLEIGVQSVYEDVARDTNRGHTVKAVCESFHLAKDAGF-KVVAHMMPDL-PNVGMERDIE 306 (554)
T ss_pred cCcccchhhhHHHHHhcCCceEEeccchhHHHhhhcccCCccHHHHHHHhhhhhccCc-eeehhhCCCC-CCCchhhhHH
Confidence 665444 678999999999999999999755554444455678899999999999999 6655443221 23 35688
Q ss_pred HHHHHHhhCCC
Q 022377 144 DFVELTRDRPI 154 (298)
Q Consensus 144 ~i~~~~~~~g~ 154 (298)
++.+++.+-.+
T Consensus 307 qF~E~FenP~F 317 (554)
T KOG2535|consen 307 QFKEYFENPAF 317 (554)
T ss_pred HHHHHhcCcCc
Confidence 89998877443
No 224
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=85.28 E-value=27 Score=32.21 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=92.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccC------ccccHHHHHHHHhccCCCCcEEE-----EeCccc------hHhh
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPT------VRKDIEEACFHLSKLKGLKTLAM-----TTNGLT------LARK 76 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl------l~~~~~~ii~~~~~~~~~~~v~i-----~TNG~l------l~~~ 76 (298)
.|..++..-+++.+.+.|...+-+-||--| |+.|=++-++.+++.-+-..+.+ ++=|+. .+.+
T Consensus 24 Rmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfLnEDPWeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~F 103 (472)
T COG5016 24 RMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFLNEDPWERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKF 103 (472)
T ss_pred HHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHhcCCHHHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHH
Confidence 488899999999999999888888888753 44455555666655311111221 222332 2345
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCE--EEEEEEecCCCHhHHHHHHHHHhhCCC
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPV--KVNCVVMRGFNDDEICDFVELTRDRPI 154 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v--~i~~vi~~~~n~~~i~~i~~~~~~~g~ 154 (298)
+++..++|++.+.| +|+.+.- .....+++..++.|. ++ .+.++++|=++.+...++++-+.++|+
T Consensus 104 v~ka~~nGidvfRi-FDAlND~-----------RNl~~ai~a~kk~G~-h~q~~i~YT~sPvHt~e~yv~~akel~~~g~ 170 (472)
T COG5016 104 VEKAAENGIDVFRI-FDALNDV-----------RNLKTAIKAAKKHGA-HVQGTISYTTSPVHTLEYYVELAKELLEMGV 170 (472)
T ss_pred HHHHHhcCCcEEEe-chhccch-----------hHHHHHHHHHHhcCc-eeEEEEEeccCCcccHHHHHHHHHHHHHcCC
Confidence 67777789997766 3654422 233445566666776 54 455566665556666666666666787
Q ss_pred eeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhCC
Q 022377 155 NIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 155 ~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~~ 189 (298)
+ .+.+-...+-- .+....|+...+++.++
T Consensus 171 D--SIciKDmaGll----tP~~ayelVk~iK~~~~ 199 (472)
T COG5016 171 D--SICIKDMAGLL----TPYEAYELVKAIKKELP 199 (472)
T ss_pred C--EEEeecccccC----ChHHHHHHHHHHHHhcC
Confidence 5 33333322210 11234677788888773
No 225
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=85.26 E-value=6.1 Score=34.52 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEc-C--C----------ccCccccHHHHHHHHhccCCCCcEEEEeCc
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLT-G--G----------EPTVRKDIEEACFHLSKLKGLKTLAMTTNG 70 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~t-G--G----------EPll~~~~~~ii~~~~~~~~~~~v~i~TNG 70 (298)
.-++.+..++.|+.+.++|...|.+- | | +|.-..++.++++|+++ +|+. +.|-.|-
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~-KgVg-i~lw~~~ 95 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKE-KGVG-IWLWYHS 95 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHH-TT-E-EEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHH-cCCC-EEEEEeC
Confidence 35799999999999999999999884 3 1 23345668899999999 5985 7776665
No 226
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=84.90 E-value=28 Score=31.07 Aligned_cols=69 Identities=17% Similarity=0.333 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEc--CC---------ccCcccc-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHH
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLT--GG---------EPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKE 82 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~t--GG---------EPll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~ 82 (298)
-+.+++.+.++++.+.|...|.+. |+ .+.+.++ +..+++.+++. ++. +.+..++. ..++...+
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~-g~~-v~~H~~~~---~~i~~~l~ 191 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA-GLY-VAAHAYGA---EAIRRAIR 191 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc-CCE-EEEEeCCH---HHHHHHHH
Confidence 358889999999888898877654 43 2355555 55889888885 885 87777763 23445556
Q ss_pred cCCCeE
Q 022377 83 SGLTSV 88 (298)
Q Consensus 83 ~~~~~v 88 (298)
.|.+.+
T Consensus 192 ~G~~~i 197 (342)
T cd01299 192 AGVDTI 197 (342)
T ss_pred cCCCEE
Confidence 666643
No 227
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=84.72 E-value=23 Score=29.92 Aligned_cols=131 Identities=15% Similarity=0.126 Sum_probs=85.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeC---ccchH----hhHHHH
Q 022377 8 LTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN---GLTLA----RKLPKL 80 (298)
Q Consensus 8 ~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TN---G~ll~----~~~~~l 80 (298)
.+-=+...|.+++.++++++.++++..|++. |.+..+++...+..++. +..+.+ |.... ...+..
T Consensus 12 ~T~L~p~~t~~~i~~~~~~A~~~~~~avcv~-------p~~v~~a~~~l~~~~v~-v~tVigFP~G~~~~~~K~~e~~~A 83 (221)
T PRK00507 12 HTLLKPEATEEDIDKLCDEAKEYGFASVCVN-------PSYVKLAAELLKGSDVK-VCTVIGFPLGANTTAVKAFEAKDA 83 (221)
T ss_pred hccCCCCCCHHHHHHHHHHHHHhCCeEEEEC-------HHHHHHHHHHhCCCCCe-EEEEecccCCCChHHHHHHHHHHH
Confidence 3334568999999999999999999888874 66666655443323553 544432 22221 235566
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
.+.|.+.+-+-++-.... .+.|+.+.+-|+.+++. +. .+++-.-.. -.+.+++..+.+.+.+.|++
T Consensus 84 i~~GA~EiD~Vin~~~~~-------~g~~~~v~~ei~~v~~~~~~~-~lKvIlEt~-~L~~e~i~~a~~~~~~agad 151 (221)
T PRK00507 84 IANGADEIDMVINIGALK-------SGDWDAVEADIRAVVEAAGGA-VLKVIIETC-LLTDEEKVKACEIAKEAGAD 151 (221)
T ss_pred HHcCCceEeeeccHHHhc-------CCCHHHHHHHHHHHHHhcCCc-eEEEEeecC-cCCHHHHHHHHHHHHHhCCC
Confidence 667888877776642111 24589999999998885 33 343322222 25678899999999998887
No 228
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=84.42 E-value=6.1 Score=29.82 Aligned_cols=78 Identities=22% Similarity=0.226 Sum_probs=51.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcC
Q 022377 5 GVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG 84 (298)
Q Consensus 5 ~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~ 84 (298)
|++-..-+...+.+++.+.+ .+.+..-|.+++-.+...+.+.++++.+++. +...+.+.--|...++..+++.++|
T Consensus 27 G~~vi~lG~~vp~e~~~~~a---~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~-~~~~i~i~~GG~~~~~~~~~~~~~G 102 (122)
T cd02071 27 GFEVIYTGLRQTPEEIVEAA---IQEDVDVIGLSSLSGGHMTLFPEVIELLREL-GAGDILVVGGGIIPPEDYELLKEMG 102 (122)
T ss_pred CCEEEECCCCCCHHHHHHHH---HHcCCCEEEEcccchhhHHHHHHHHHHHHhc-CCCCCEEEEECCCCHHHHHHHHHCC
Confidence 44444445567777765444 4556778888877666666777888888774 4423556666655566788888888
Q ss_pred CC
Q 022377 85 LT 86 (298)
Q Consensus 85 ~~ 86 (298)
++
T Consensus 103 ~d 104 (122)
T cd02071 103 VA 104 (122)
T ss_pred CC
Confidence 77
No 229
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=84.34 E-value=5.1 Score=35.18 Aligned_cols=109 Identities=15% Similarity=0.199 Sum_probs=71.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
++..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +-..+.+..+.+ ..+...
T Consensus 12 ~~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~-vi~gv~~~s~~~~i~~a~~a~ 90 (285)
T TIGR00674 12 EDGSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVP-VIAGTGSNATEEAISLTKFAE 90 (285)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCe-EEEeCCCccHHHHHHHHHHHH
Confidence 45789999999999999999999999865 88 777655 33555544432 1343 545555544544 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
+.|.+.+.+.--. .+ ..+-+.+++-.+.+.+. ++ ++.+.
T Consensus 91 ~~Gad~v~v~pP~----y~-----~~~~~~i~~~~~~i~~~~~~-pi~lY 130 (285)
T TIGR00674 91 DVGADGFLVVTPY----YN-----KPTQEGLYQHFKAIAEEVDL-PIILY 130 (285)
T ss_pred HcCCCEEEEcCCc----CC-----CCCHHHHHHHHHHHHhcCCC-CEEEE
Confidence 7899988886432 11 12346677777777664 55 55443
No 230
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=84.14 E-value=24 Score=29.68 Aligned_cols=113 Identities=13% Similarity=0.203 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcC--Cc--cCccccHHHHHHHHhccCCCC-cEEE-EeCccchHhhHHHHHHcCCCeEE
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTG--GE--PTVRKDIEEACFHLSKLKGLK-TLAM-TTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tG--GE--Pll~~~~~~ii~~~~~~~~~~-~v~i-~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
++..+.+-++++.+.|...+++-= |- |-+-.. ..+++.+++...+. .+.+ +.|. ++.++.+.++|.+.|+
T Consensus 14 D~~~l~~el~~~~~agad~iH~DVMDghFVPNiTfG-p~~v~~l~~~t~~p~DvHLMV~~p---~~~i~~fa~agad~It 89 (220)
T COG0036 14 DFARLGEELKALEAAGADLIHIDVMDGHFVPNITFG-PPVVKALRKITDLPLDVHLMVENP---DRYIEAFAKAGADIIT 89 (220)
T ss_pred CHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcccC-HHHHHHHhhcCCCceEEEEecCCH---HHHHHHHHHhCCCEEE
Confidence 344555667777778888888752 32 222211 25555555532221 2332 2332 5679999999999998
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
|.... .+ .+.+.|+.+++.|+ . ...++.|+...+.++.+++.+
T Consensus 90 ~H~E~-~~-------------~~~r~i~~Ik~~G~-k--aGv~lnP~Tp~~~i~~~l~~v 132 (220)
T COG0036 90 FHAEA-TE-------------HIHRTIQLIKELGV-K--AGLVLNPATPLEALEPVLDDV 132 (220)
T ss_pred EEecc-Cc-------------CHHHHHHHHHHcCC-e--EEEEECCCCCHHHHHHHHhhC
Confidence 88763 21 34566777778887 4 456777865566666666543
No 231
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=83.97 E-value=7.3 Score=32.39 Aligned_cols=109 Identities=13% Similarity=0.179 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEc--CCc--cCccccHHHHHHHHhccCCCC-cEEEEeCccchHhhHHHHHHcCCCeEEEec
Q 022377 18 NEILRLAYLFVTSGVDKIRLT--GGE--PTVRKDIEEACFHLSKLKGLK-TLAMTTNGLTLARKLPKLKESGLTSVNISL 92 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~~v~~t--GGE--Pll~~~~~~ii~~~~~~~~~~-~v~i~TNG~ll~~~~~~l~~~~~~~v~iSl 92 (298)
-.+.+-++++.+.|+..+++= -|. |-+.. -.++++++++...+. .+.+-+. .-.+.++.+.++|.+.|.+.+
T Consensus 12 ~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~-g~~~i~~i~~~~~~~~DvHLMv~--~P~~~i~~~~~~g~~~i~~H~ 88 (201)
T PF00834_consen 12 LNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTF-GPDIIKAIRKITDLPLDVHLMVE--NPERYIEEFAEAGADYITFHA 88 (201)
T ss_dssp GGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B--HHHHHHHHTTSSSEEEEEEESS--SGGGHHHHHHHHT-SEEEEEG
T ss_pred HHHHHHHHHHHHcCCCEEEEeecccccCCcccC-CHHHHHHHhhcCCCcEEEEeeec--cHHHHHHHHHhcCCCEEEEcc
Confidence 345666778888888877763 454 54432 235666666643322 2443222 124579999999999998888
Q ss_pred CCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHH
Q 022377 93 DTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFV 146 (298)
Q Consensus 93 dg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~ 146 (298)
++.. ...+.++.++++|+ +++ ..+.|+...+.++.++
T Consensus 89 E~~~--------------~~~~~i~~ik~~g~-k~G--ialnP~T~~~~~~~~l 125 (201)
T PF00834_consen 89 EATE--------------DPKETIKYIKEAGI-KAG--IALNPETPVEELEPYL 125 (201)
T ss_dssp GGTT--------------THHHHHHHHHHTTS-EEE--EEE-TTS-GGGGTTTG
T ss_pred cchh--------------CHHHHHHHHHHhCC-CEE--EEEECCCCchHHHHHh
Confidence 7531 23456777788888 554 4566754455554443
No 232
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=83.96 E-value=10 Score=33.24 Aligned_cols=108 Identities=13% Similarity=0.226 Sum_probs=70.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchH---hhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~---~~~~~l~ 81 (298)
++..++.+.+.+.++.+.+.|+..+.+.| || +.|..+ -.++++.+.+. .++. +-+.+.+..+. +.++...
T Consensus 15 ~dg~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~-vi~gv~~~st~~~i~~a~~a~ 93 (289)
T PF00701_consen 15 ADGSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVP-VIAGVGANSTEEAIELARHAQ 93 (289)
T ss_dssp TTSSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSE-EEEEEESSSHHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceE-EEecCcchhHHHHHHHHHHHh
Confidence 46789999999999999999999999976 89 555443 34555544331 2443 55556655554 4567777
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
+.|.+.+.+..-.+. ..+-+.+++-++.+.+. ++ ++.+
T Consensus 94 ~~Gad~v~v~~P~~~---------~~s~~~l~~y~~~ia~~~~~-pi~i 132 (289)
T PF00701_consen 94 DAGADAVLVIPPYYF---------KPSQEELIDYFRAIADATDL-PIII 132 (289)
T ss_dssp HTT-SEEEEEESTSS---------SCCHHHHHHHHHHHHHHSSS-EEEE
T ss_pred hcCceEEEEeccccc---------cchhhHHHHHHHHHHhhcCC-CEEE
Confidence 889998888753221 23466777777777765 45 5544
No 233
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=83.90 E-value=35 Score=31.36 Aligned_cols=25 Identities=16% Similarity=0.058 Sum_probs=11.8
Q ss_pred HHHHHHhccCCCCcEE-EEeCccchHh
Q 022377 50 EACFHLSKLKGLKTLA-MTTNGLTLAR 75 (298)
Q Consensus 50 ~ii~~~~~~~~~~~v~-i~TNG~ll~~ 75 (298)
++++.+.+. |...+. ..|+|...++
T Consensus 149 ~~~~~~~~~-Ga~~I~l~DT~G~~~P~ 174 (378)
T PRK11858 149 EFAKAAEEA-GADRVRFCDTVGILDPF 174 (378)
T ss_pred HHHHHHHhC-CCCEEEEeccCCCCCHH
Confidence 555555552 433222 2466655543
No 234
>TIGR02146 LysS_fung_arch homocitrate synthase. This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.
Probab=83.86 E-value=32 Score=30.86 Aligned_cols=145 Identities=19% Similarity=0.160 Sum_probs=87.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~ 81 (298)
+|+|.|.. ...++.++..+++..+.+.|+..+.+.. |-..++..+..+.+... +.. -.+..-+....+.++...
T Consensus 6 lRDG~q~~--~~~~~~~~ki~i~~~l~~~Gv~~iE~g~--p~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~a~ 79 (344)
T TIGR02146 6 LREGEQFP--GANFSTEQKIEIAKALDEFGIDYIEVTH--PAASKQSRIDIEIIASL-GLK-ANIVTHIRCRLDDAKVAV 79 (344)
T ss_pred CCccCcCC--CCCCCHHHHHHHHHHHHHcCCCEEEEeC--CCCCHHHHHHHHHHHhc-CCC-cEEEEECCCCHHHHHHHH
Confidence 56666644 4568999999999999999998888765 55555544444444432 221 122222222234566677
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCC----cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRK----GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~----~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
+.+++.+.+..-. + +.+....-.. ..+.+...++.+.+.|. .+.+...-.-....+.+.++++.+...|.+
T Consensus 80 ~~~~~~~~~~~~~-s-~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~-~~~~~~~~~~~~~~~~~~~~~d~~~~~g~~ 154 (344)
T TIGR02146 80 ELGVDGIDIFFGT-S-KLLRIAEHRSDAKSILESARETIEYAKSAGL-EVRFSAEDTFRSELADLLSIYETVGVFGVD 154 (344)
T ss_pred HCCcCEEEEEEec-C-HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCC-eEEEEEeeCCCCCHHHHHHHHHHHHHCCCC
Confidence 7788877766533 2 3222221111 25678888888888888 666655333223456677777777776663
No 235
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=83.83 E-value=17 Score=31.67 Aligned_cols=103 Identities=11% Similarity=0.159 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccC-cccc-HHHHHHHHhccCCCCcEEE-EeCccchHhhHHHHHHc---CCCe-E
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTGGEPT-VRKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKLPKLKES---GLTS-V 88 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tGGEPl-l~~~-~~~ii~~~~~~~~~~~v~i-~TNG~ll~~~~~~l~~~---~~~~-v 88 (298)
..+++...++.+++.|. .|.++.=.-+ ..++ +.++++.+.+. |...+.+ .|.|.+.++.+..+... .++. +
T Consensus 107 ~~~~~~~~i~~ak~~G~-~v~~~~~~a~~~~~~~~~~~~~~~~~~-g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~ 184 (266)
T cd07944 107 EFDEALPLIKAIKEKGY-EVFFNLMAISGYSDEELLELLELVNEI-KPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDI 184 (266)
T ss_pred cHHHHHHHHHHHHHCCC-eEEEEEEeecCCCHHHHHHHHHHHHhC-CCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 56777777887777774 3333211111 2233 44777777764 5544443 48887776544333221 2322 5
Q ss_pred EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE
Q 022377 89 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC 131 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~ 131 (298)
.|++++.+ ++.-.+.|.....++|...+...+
T Consensus 185 ~i~~H~Hn-----------~~Gla~AN~laA~~aGa~~vd~s~ 216 (266)
T cd07944 185 KLGFHAHN-----------NLQLALANTLEAIELGVEIIDATV 216 (266)
T ss_pred eEEEEeCC-----------CccHHHHHHHHHHHcCCCEEEEec
Confidence 66666632 234555555556667774444444
No 236
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=83.72 E-value=11 Score=34.17 Aligned_cols=82 Identities=21% Similarity=0.279 Sum_probs=56.1
Q ss_pred CCCCCHHHHHHHHHHHHh-------CCCCEEEEcCC---------ccCcc-------------ccHH-HHHHHHhccCCC
Q 022377 12 PQLLSLNEILRLAYLFVT-------SGVDKIRLTGG---------EPTVR-------------KDIE-EACFHLSKLKGL 61 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-------~~~~~v~~tGG---------EPll~-------------~~~~-~ii~~~~~~~~~ 61 (298)
..+||.|||..+++.+.+ .|...|.+.+| -|..+ ..|. ++++.+++.-++
T Consensus 129 p~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~ 208 (337)
T PRK13523 129 PVEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDG 208 (337)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 367999999999875544 68889999887 47652 2244 888888874344
Q ss_pred CcEEEEeC-------ccchHh---hHHHHHHcCCCeEEEecCC
Q 022377 62 KTLAMTTN-------GLTLAR---KLPKLKESGLTSVNISLDT 94 (298)
Q Consensus 62 ~~v~i~TN-------G~ll~~---~~~~l~~~~~~~v~iSldg 94 (298)
. +.+-.| |.-.++ .+..|.+.|+|.|.||.-+
T Consensus 209 ~-v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~ 250 (337)
T PRK13523 209 P-LFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGA 250 (337)
T ss_pred C-eEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 3 555444 333332 3577777899999999654
No 237
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=83.22 E-value=6.5 Score=34.71 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=72.0
Q ss_pred CCCCCCCHHHHHHHHHHHHh-CCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHH
Q 022377 10 PKPQLLSLNEILRLAYLFVT-SGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPK 79 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~-~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~ 79 (298)
.++..++.+.+.+.++.+.+ .|+..|.+.| || +.|..+ -.++++.+.+. ..+. +-..+....+++ ..+.
T Consensus 16 ~~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~-viagvg~~~t~~ai~~a~~ 94 (293)
T PRK04147 16 DEDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVK-LIAQVGSVNTAEAQELAKY 94 (293)
T ss_pred CCCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCC-EEecCCCCCHHHHHHHHHH
Confidence 35678999999999999999 9999999987 99 777765 33555544432 2343 545454444443 4566
Q ss_pred HHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 80 LKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 80 l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
..+.|.+.+.+.--.. + ..+-+.+++-++.+.++ +. ++.+.
T Consensus 95 a~~~Gad~v~v~~P~y----~-----~~~~~~l~~~f~~va~a~~l-Pv~iY 136 (293)
T PRK04147 95 ATELGYDAISAVTPFY----Y-----PFSFEEICDYYREIIDSADN-PMIVY 136 (293)
T ss_pred HHHcCCCEEEEeCCcC----C-----CCCHHHHHHHHHHHHHhCCC-CEEEE
Confidence 7788999888774321 1 12345666666666654 56 55543
No 238
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=83.14 E-value=6.5 Score=34.77 Aligned_cols=109 Identities=13% Similarity=0.185 Sum_probs=69.5
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +..-+.+..+.+ ..+...
T Consensus 14 ~dg~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~p-vi~gv~~~~t~~ai~~a~~A~ 92 (294)
T TIGR02313 14 RNGDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIP-FAPGTGALNHDETLELTKFAE 92 (294)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCc-EEEECCcchHHHHHHHHHHHH
Confidence 45679999999999999999999999987 89 666544 33555543331 2343 444444434433 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~ 130 (298)
+.|.+.+.+.--. .+ ..+-+.+++-.+.+.++ ++ ++.+.
T Consensus 93 ~~Gad~v~v~pP~----y~-----~~~~~~l~~~f~~ia~a~~~l-pv~iY 133 (294)
T TIGR02313 93 EAGADAAMVIVPY----YN-----KPNQEALYDHFAEVADAVPDF-PIIIY 133 (294)
T ss_pred HcCCCEEEEcCcc----CC-----CCCHHHHHHHHHHHHHhccCC-CEEEE
Confidence 7799987776432 11 12356777777777664 46 65543
No 239
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=83.06 E-value=25 Score=29.09 Aligned_cols=128 Identities=19% Similarity=0.196 Sum_probs=83.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeC---ccc-hH---hhHHHHHHcCC
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN---GLT-LA---RKLPKLKESGL 85 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TN---G~l-l~---~~~~~l~~~~~ 85 (298)
...+.+++.++++++.+.++..|+++ |.+.+.+....+..++. +..+.+ |.. .+ ..++...+.|.
T Consensus 12 p~~t~~~i~~~~~~a~~~~~~av~v~-------p~~v~~~~~~l~~~~~~-v~~~~~fp~g~~~~~~k~~eve~A~~~GA 83 (203)
T cd00959 12 PDATEEDIRKLCDEAKEYGFAAVCVN-------PCFVPLAREALKGSGVK-VCTVIGFPLGATTTEVKVAEAREAIADGA 83 (203)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEc-------HHHHHHHHHHcCCCCcE-EEEEEecCCCCCcHHHHHHHHHHHHHcCC
Confidence 56799999999999999888888866 66655443332213442 443332 111 11 23677777899
Q ss_pred CeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeE
Q 022377 86 TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIR 157 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~ 157 (298)
+.|.+.++-. . + ..+.++.+++.|..+.+. |. ++.+.+-... .+.+++....+.+.+.|.++-
T Consensus 84 devdvv~~~g-~-----~-~~~~~~~~~~ei~~v~~~~~g~-~lkvI~e~~~-l~~~~i~~a~ria~e~GaD~I 148 (203)
T cd00959 84 DEIDMVINIG-A-----L-KSGDYEAVYEEIAAVVEACGGA-PLKVILETGL-LTDEEIIKACEIAIEAGADFI 148 (203)
T ss_pred CEEEEeecHH-H-----H-hCCCHHHHHHHHHHHHHhcCCC-eEEEEEecCC-CCHHHHHHHHHHHHHhCCCEE
Confidence 9999988752 1 1 124577888888888875 55 6665322222 456789999999999999753
No 240
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=82.87 E-value=30 Score=29.83 Aligned_cols=56 Identities=25% Similarity=0.313 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCcc
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGL 71 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ 71 (298)
..+.+++...+.+..+.|-..+.++.|+|+++.-...+++.+.+. ++. +.+.-.-+
T Consensus 63 ~~~~~~i~~~i~~~~~~g~~Vv~L~sGDP~~yg~~~~l~~~l~~~-~i~-veiiPGIS 118 (257)
T PRK15473 63 ELHLEQIIDLMEAGVKAGKTVVRLQTGDVSLYGSIREQGEELTKR-GID-FQVVPGVS 118 (257)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEeCcCchhhhhHHHHHHHHHHC-CCC-EEEeCChh
Confidence 356777777777666666567778899999998888999988874 775 77754433
No 241
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=82.71 E-value=13 Score=32.57 Aligned_cols=109 Identities=17% Similarity=0.234 Sum_probs=71.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchH---hhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~---~~~~~l~ 81 (298)
.+..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +...+.+..+. +.++...
T Consensus 14 ~dg~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~-vi~gv~~~~~~~~~~~a~~a~ 92 (284)
T cd00950 14 DDGSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVP-VIAGTGSNNTAEAIELTKRAE 92 (284)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCc-EEeccCCccHHHHHHHHHHHH
Confidence 45689999999999999999999999876 88 666554 44666655442 1342 44444444443 3567777
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVN 130 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~ 130 (298)
+.|.+.|.+.--.. + ..+-+.+++-.+.+.+. ++ ++.+.
T Consensus 93 ~~G~d~v~~~~P~~----~-----~~~~~~l~~~~~~ia~~~~~-pi~lY 132 (284)
T cd00950 93 KAGADAALVVTPYY----N-----KPSQEGLYAHFKAIAEATDL-PVILY 132 (284)
T ss_pred HcCCCEEEEccccc----C-----CCCHHHHHHHHHHHHhcCCC-CEEEE
Confidence 88999888874321 1 12346677777777764 56 66544
No 242
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.63 E-value=17 Score=30.09 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=55.7
Q ss_pred HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhh-cCCCcHHHHHHHHHHHHHcCCCC
Q 022377 48 IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFL-TRRKGHEKVMESINAAIEVGYNP 126 (298)
Q Consensus 48 ~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~i-r~~~~~~~v~~~i~~l~~~g~~~ 126 (298)
+.+.++...+..+. .+.+.|--..++ .+..+...+-..+..||.. ++.-+.. .+..+++.-+++++.+.++|. +
T Consensus 12 l~~~I~ff~~~~~~-~lef~TK~~nv~-~Ll~l~~~~~t~~rfSlnp--~~Ii~~~E~~T~sl~~Rl~Aa~k~a~aGy-~ 86 (199)
T TIGR00620 12 LKRAIEHFGQSDFG-KLRFVTKFHHVD-HLLDAKHNGKTRFRFSINA--DYVIKNFEPGTSPLDKRIEAAVKVAKAGY-P 86 (199)
T ss_pred HHHHHHHHccCCCc-EEEEEEcccchh-hHhcCCCCCCEEEEEEeCH--HHHHHHhcCCCCCHHHHHHHHHHHHHcCC-e
Confidence 45777777776566 488888765442 2444445566679999987 3333333 355679999999999999999 8
Q ss_pred EEEEE
Q 022377 127 VKVNC 131 (298)
Q Consensus 127 v~i~~ 131 (298)
|++.+
T Consensus 87 Vg~~~ 91 (199)
T TIGR00620 87 LGFII 91 (199)
T ss_pred EEEEe
Confidence 88776
No 243
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=82.62 E-value=17 Score=32.84 Aligned_cols=81 Identities=21% Similarity=0.348 Sum_probs=55.7
Q ss_pred CCCCCHHHHHHHHHHHHh-------CCCCEEEEcCCc---------cCcc-------------ccHH-HHHHHHhccC--
Q 022377 12 PQLLSLNEILRLAYLFVT-------SGVDKIRLTGGE---------PTVR-------------KDIE-EACFHLSKLK-- 59 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-------~~~~~v~~tGGE---------Pll~-------------~~~~-~ii~~~~~~~-- 59 (298)
..+||.++|..+++++.+ .|...|.|.+|- |..+ ..|. ++++.+++..
T Consensus 136 p~~mt~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~ 215 (338)
T cd04733 136 PRAMTEEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGP 215 (338)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 468999999988875544 688899998875 7754 2344 8888888743
Q ss_pred CCCcEEEEeC-------ccchH---hhHHHHHHcCCCeEEEecC
Q 022377 60 GLKTLAMTTN-------GLTLA---RKLPKLKESGLTSVNISLD 93 (298)
Q Consensus 60 ~~~~v~i~TN-------G~ll~---~~~~~l~~~~~~~v~iSld 93 (298)
++. +.+--| |.-.+ +.++.|.+.|++.|.||--
T Consensus 216 d~~-v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g 258 (338)
T cd04733 216 GFP-VGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGG 258 (338)
T ss_pred CCe-EEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 343 666554 33333 3457777788999988853
No 244
>PLN02645 phosphoglycolate phosphatase
Probab=82.51 E-value=3.6 Score=36.63 Aligned_cols=73 Identities=27% Similarity=0.262 Sum_probs=54.1
Q ss_pred CCCCCCCHHHHHHHHHHHHh--CCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch--HhhHHHHHHcCC
Q 022377 10 PKPQLLSLNEILRLAYLFVT--SGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL--ARKLPKLKESGL 85 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~--~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll--~~~~~~l~~~~~ 85 (298)
.....|+.+++.++++.++- +.+..+.+.|++|+ +...+.++.+++. |+. +.+.||.... .+.+++|...|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~D~DGtl~~~~~~~--~ga~e~l~~lr~~-g~~-~~~~TN~~~~~~~~~~~~l~~lGi 86 (311)
T PLN02645 11 AAAQLLTLENADELIDSVETFIFDCDGVIWKGDKLI--EGVPETLDMLRSM-GKK-LVFVTNNSTKSRAQYGKKFESLGL 86 (311)
T ss_pred cccccCCHHHHHHHHHhCCEEEEeCcCCeEeCCccC--cCHHHHHHHHHHC-CCE-EEEEeCCCCCCHHHHHHHHHHCCC
Confidence 34567889999998886543 34556777888876 7789999999984 985 9999986644 346788877775
Q ss_pred C
Q 022377 86 T 86 (298)
Q Consensus 86 ~ 86 (298)
.
T Consensus 87 ~ 87 (311)
T PLN02645 87 N 87 (311)
T ss_pred C
Confidence 3
No 245
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=82.22 E-value=16 Score=32.24 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=68.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +-..+.. .+.+ ..+...
T Consensus 19 ~dg~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~p-vi~gv~~-~t~~ai~~a~~a~ 96 (296)
T TIGR03249 19 ADGSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVP-VYTGVGG-NTSDAIEIARLAE 96 (296)
T ss_pred CCCCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCc-EEEecCc-cHHHHHHHHHHHH
Confidence 45789999999999999999999999876 99 777654 33555544331 2343 4444443 3543 456667
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
+.|.+.+.+.- |- |. ..+-+.+++-.+.+.++ ++ ++.+
T Consensus 97 ~~Gadav~~~p----P~-y~----~~s~~~i~~~f~~v~~a~~~-pvil 135 (296)
T TIGR03249 97 KAGADGYLLLP----PY-LI----NGEQEGLYAHVEAVCESTDL-GVIV 135 (296)
T ss_pred HhCCCEEEECC----CC-CC----CCCHHHHHHHHHHHHhccCC-CEEE
Confidence 78999776643 22 21 12346777777777664 45 5544
No 246
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=82.10 E-value=30 Score=29.27 Aligned_cols=113 Identities=13% Similarity=0.182 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc--CCc--cCccccHHHHHHHHhcc-CCCC-cEEEEeCccchHhhHHHHHHcCCCeEE
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLT--GGE--PTVRKDIEEACFHLSKL-KGLK-TLAMTTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~t--GGE--Pll~~~~~~ii~~~~~~-~~~~-~v~i~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
+.-.+.+-++++.+.|+..+++- -|. |-+... .++++.+++. ..+. .+.+-++ ...+.++.+.++|.+.|.
T Consensus 14 d~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg-~~~i~~lr~~~~~~~~dvHLMv~--~P~~~i~~~~~~gad~I~ 90 (223)
T PRK08745 14 DFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIG-PMVCQALRKHGITAPIDVHLMVE--PVDRIVPDFADAGATTIS 90 (223)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCccCCCcccC-HHHHHHHHhhCCCCCEEEEeccC--CHHHHHHHHHHhCCCEEE
Confidence 34466777888888888777664 354 433221 2455555442 1221 2443322 134578999999999888
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHH
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVEL 148 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~ 148 (298)
|...+. ....+.++.++++|+ +. ..++.|+...+.++.+++.
T Consensus 91 ~H~Ea~--------------~~~~~~l~~Ir~~g~-k~--GlalnP~T~~~~i~~~l~~ 132 (223)
T PRK08745 91 FHPEAS--------------RHVHRTIQLIKSHGC-QA--GLVLNPATPVDILDWVLPE 132 (223)
T ss_pred EcccCc--------------ccHHHHHHHHHHCCC-ce--eEEeCCCCCHHHHHHHHhh
Confidence 887652 124567788888888 55 4466675555666666553
No 247
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=81.97 E-value=33 Score=29.66 Aligned_cols=121 Identities=14% Similarity=0.132 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhCCCC-EEEEcCCccCcccc-HHHHHHHHhccCCCCcEEE-EeCccchHhhHH----HHHHcCCCeEEE
Q 022377 18 NEILRLAYLFVTSGVD-KIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKLP----KLKESGLTSVNI 90 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~-~v~~tGGEPll~~~-~~~ii~~~~~~~~~~~v~i-~TNG~ll~~~~~----~l~~~~~~~v~i 90 (298)
+.+.+.++.+++.|.. .+.+...- ...++ +.++++.+.+. |...+.+ .|.|.+.++.+. .+++ .+..+.|
T Consensus 112 ~~~~~~i~~ak~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~-G~d~i~l~DT~G~~~P~~v~~lv~~l~~-~~~~~~l 188 (263)
T cd07943 112 DVSEQHIGAARKLGMDVVGFLMMSH-MASPEELAEQAKLMESY-GADCVYVTDSAGAMLPDDVRERVRALRE-ALDPTPV 188 (263)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEecc-CCCHHHHHHHHHHHHHc-CCCEEEEcCCCCCcCHHHHHHHHHHHHH-hCCCceE
Confidence 4566667777777632 22232111 12333 44777777663 5543443 477777655433 3333 2332455
Q ss_pred ecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec-CC--CHhHHHHHHHHHhhCCC
Q 022377 91 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR-GF--NDDEICDFVELTRDRPI 154 (298)
Q Consensus 91 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~-~~--n~~~i~~i~~~~~~~g~ 154 (298)
++++.+ ++...+.|.-.+.++|... +.+++.. |. ---.+++++.++...|+
T Consensus 189 ~~H~Hn-----------~~GlA~AN~laAi~aGa~~--vd~s~~GlG~~aGN~~~E~lv~~L~~~g~ 242 (263)
T cd07943 189 GFHGHN-----------NLGLAVANSLAAVEAGATR--IDGSLAGLGAGAGNTPLEVLVAVLERMGI 242 (263)
T ss_pred EEEecC-----------CcchHHHHHHHHHHhCCCE--EEeecccccCCcCCccHHHHHHHHHhcCC
Confidence 655532 1223444444444567622 3333331 11 11235556665555554
No 248
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=81.69 E-value=18 Score=32.15 Aligned_cols=108 Identities=12% Similarity=0.108 Sum_probs=69.8
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchHh---hHHHH
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLAR---KLPKL 80 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~~---~~~~l 80 (298)
..+..++.+.+.+.++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +-..+.+ .+.+ ..+..
T Consensus 20 ~~dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~p-vi~gv~~-~t~~~i~~~~~a 97 (303)
T PRK03620 20 DADGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVP-VIAGAGG-GTAQAIEYAQAA 97 (303)
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCc-EEEecCC-CHHHHHHHHHHH
Confidence 356789999999999999999999999876 99 777665 33555544331 2343 4444433 4443 45666
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
.+.|.+.+.+.- |- |. ..+-+.+.+-.+.+.+. ++ ++.+
T Consensus 98 ~~~Gadav~~~p----P~-y~----~~~~~~i~~~f~~va~~~~l-pi~l 137 (303)
T PRK03620 98 ERAGADGILLLP----PY-LT----EAPQEGLAAHVEAVCKSTDL-GVIV 137 (303)
T ss_pred HHhCCCEEEECC----CC-CC----CCCHHHHHHHHHHHHHhCCC-CEEE
Confidence 778999887742 22 21 12346677777777664 56 6554
No 249
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=81.39 E-value=9.1 Score=33.75 Aligned_cols=108 Identities=12% Similarity=0.112 Sum_probs=69.4
Q ss_pred CCCCCCHHHHHHHHHHHHhCC-CCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchH---hhHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSG-VDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKL 80 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~-~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~---~~~~~l 80 (298)
.+..++.+.+.+.++.+.+.| +..|.+.| || +.|..+ -.++++.+.+. ..+. +...+.+..+. +..+..
T Consensus 14 ~dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~p-vi~gv~~~~t~~~i~la~~a 92 (290)
T TIGR00683 14 EDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIA-LIAQVGSVNLKEAVELGKYA 92 (290)
T ss_pred CCCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCc-EEEecCCCCHHHHHHHHHHH
Confidence 445899999999999999999 99999877 99 888765 33555544432 1342 44443333343 345666
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEE
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKV 129 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i 129 (298)
.+.|.+.|.+.--. .+ ..+-+.+++-.+.+.+. +. ++.+
T Consensus 93 ~~~Gad~v~v~~P~----y~-----~~~~~~i~~yf~~v~~~~~~l-pv~l 133 (290)
T TIGR00683 93 TELGYDCLSAVTPF----YY-----KFSFPEIKHYYDTIIAETGGL-NMIV 133 (290)
T ss_pred HHhCCCEEEEeCCc----CC-----CCCHHHHHHHHHHHHhhCCCC-CEEE
Confidence 77899988775322 11 12346777777777653 46 5544
No 250
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=80.50 E-value=23 Score=29.76 Aligned_cols=77 Identities=14% Similarity=0.190 Sum_probs=53.3
Q ss_pred CccccHHHHHHHHhccCCCCcEEEEeCccchH-hhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHH
Q 022377 43 TVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA-RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIE 121 (298)
Q Consensus 43 ll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~-~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~ 121 (298)
.+-....+++.... .|+. -.+.|.|+.++ +.+..|.....+.|.+.+|+. +. +-..+.+.++.+.+
T Consensus 114 ilvEGymDVIsl~q--aGi~-naVAslGTALT~~q~~lLkr~~~~~Iil~~D~D-~A---------G~~Aa~r~~~~L~~ 180 (218)
T TIGR00646 114 YLVEGDFDWLAFRK--AGIL-NCLPLCGLTISDKQMKFFKQKKIEKIFICFDND-FA---------GKNAAANLEEILKK 180 (218)
T ss_pred EEEecHHHHHHHHH--CCCC-eEEEcCchHhHHHHHHHHhccCCCEEEEEeCCC-HH---------HHHHHHHHHHHHHH
Confidence 34444667775543 3785 77889999885 467777664578899999994 33 34677888888988
Q ss_pred cCCCCEEEEEEEec
Q 022377 122 VGYNPVKVNCVVMR 135 (298)
Q Consensus 122 ~g~~~v~i~~vi~~ 135 (298)
.|+ .+. ++..|
T Consensus 181 ~G~-~v~--vv~lP 191 (218)
T TIGR00646 181 AGF-ITK--VIEIK 191 (218)
T ss_pred CCC-eEE--EEeCC
Confidence 888 554 34444
No 251
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=79.85 E-value=9.7 Score=33.50 Aligned_cols=108 Identities=13% Similarity=0.196 Sum_probs=68.4
Q ss_pred CCCCCCHHHHHHHHHHHHhC-CCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchH---hhHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTS-GVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKL 80 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~-~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~---~~~~~l 80 (298)
++..++.+.+.+.++.+.+. |+..|.+.| || +.|..+ -.++++.+.+. ..+. +-..+.+..+. +..+..
T Consensus 14 ~dg~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~-viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 14 ENGEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVT-LIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCe-EEeccCCCCHHHHHHHHHHH
Confidence 45679999999999999999 999998876 88 777654 33555544432 1332 44444444443 345677
Q ss_pred HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEEE
Q 022377 81 KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV--GYNPVKV 129 (298)
Q Consensus 81 ~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~i 129 (298)
.+.|.+.+.+.--. .+ . .+-+.+.+-.+.+.++ ++ ++.+
T Consensus 93 ~~~Gad~v~~~~P~----y~-~----~~~~~i~~~~~~v~~a~~~l-pi~i 133 (288)
T cd00954 93 EELGYDAISAITPF----YY-K----FSFEEIKDYYREIIAAAASL-PMII 133 (288)
T ss_pred HHcCCCEEEEeCCC----CC-C----CCHHHHHHHHHHHHHhcCCC-CEEE
Confidence 88899987765322 11 1 2345666666666553 46 5554
No 252
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=79.84 E-value=30 Score=27.88 Aligned_cols=123 Identities=16% Similarity=0.206 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHH-HHHhccCCCCcEEEEeCccc----h---HhhHHHHHHcCCCe
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEAC-FHLSKLKGLKTLAMTTNGLT----L---ARKLPKLKESGLTS 87 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii-~~~~~~~~~~~v~i~TNG~l----l---~~~~~~l~~~~~~~ 87 (298)
+.+.+.++++.+.+.|+..|.++| ++.+.+ +.+.. .++. +.+.+++.. + -+.++...+.|.+.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g-------~~i~~~~~~~~~-~~~~-v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~ 81 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP-------GYVRLAADALAG-SDVP-VIVVVGFPTGLTTTEVKVAEVEEAIDLGADE 81 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH-------HHHHHHHHHhCC-CCCe-EEEEecCCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 889999999999999999988887 444333 22221 0343 444444433 3 24678888889998
Q ss_pred EEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc---CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 88 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV---GYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~---g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
+.+.... |... ..+.+.+.+-++.+.+. ++ ++.+......-...+++.++.+.+.+.|+.
T Consensus 82 i~v~~~~-----~~~~--~~~~~~~~~~~~~i~~~~~~~~-pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~ 144 (201)
T cd00945 82 IDVVINI-----GSLK--EGDWEEVLEEIAAVVEAADGGL-PLKVILETRGLKTADEIAKAARIAAEAGAD 144 (201)
T ss_pred EEEeccH-----HHHh--CCCHHHHHHHHHHHHHHhcCCc-eEEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 8775432 1111 11357777777777765 67 665544322201456677777767677774
No 253
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=79.51 E-value=12 Score=32.96 Aligned_cols=125 Identities=10% Similarity=0.029 Sum_probs=77.1
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Cc-cCcccc-HHHHHHHHhcc--CCCCcEEEEeCccchH---hhHHHHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GE-PTVRKD-IEEACFHLSKL--KGLKTLAMTTNGLTLA---RKLPKLK 81 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GE-Pll~~~-~~~ii~~~~~~--~~~~~v~i~TNG~ll~---~~~~~l~ 81 (298)
.+..++.+.+.++++.+.+.|+..|.+.| || +.|..+ -.++++.+.+. ..+. +-..+.. .+. +..+...
T Consensus 14 ~dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~p-vi~gv~~-~t~~~i~~a~~a~ 91 (289)
T cd00951 14 ADGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVP-VLAGAGY-GTATAIAYAQAAE 91 (289)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCC-EEEecCC-CHHHHHHHHHHHH
Confidence 45689999999999999999999999876 88 777654 33555544432 2343 4444433 443 3466777
Q ss_pred HcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCHhHHHHHHHHHh
Q 022377 82 ESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNCVVMRGFNDDEICDFVELTR 150 (298)
Q Consensus 82 ~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~vi~~~~n~~~i~~i~~~~~ 150 (298)
+.|.+.+.+.--. |. ..+-+.+++-++.+.+. ++ ++.+.- .+|.+. ..+-+.+++.
T Consensus 92 ~~Gad~v~~~pP~-----y~----~~~~~~i~~~f~~v~~~~~~-pi~lYn--~~g~~l-~~~~l~~L~~ 148 (289)
T cd00951 92 KAGADGILLLPPY-----LT----EAPQEGLYAHVEAVCKSTDL-GVIVYN--RANAVL-TADSLARLAE 148 (289)
T ss_pred HhCCCEEEECCCC-----CC----CCCHHHHHHHHHHHHhcCCC-CEEEEe--CCCCCC-CHHHHHHHHh
Confidence 7899988774322 21 12456777777777664 56 655432 233332 2444555554
No 254
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=79.31 E-value=45 Score=29.53 Aligned_cols=129 Identities=13% Similarity=0.204 Sum_probs=80.3
Q ss_pred HHhCCCCEEEEc------CCccCcc--------ccHHHHHHHHhccCCCCcEEEEeCccchH--------------hhHH
Q 022377 27 FVTSGVDKIRLT------GGEPTVR--------KDIEEACFHLSKLKGLKTLAMTTNGLTLA--------------RKLP 78 (298)
Q Consensus 27 ~~~~~~~~v~~t------GGEPll~--------~~~~~ii~~~~~~~~~~~v~i~TNG~ll~--------------~~~~ 78 (298)
..+.|+..|.+. +|+|... ..+..-++.+++. |.+ +.|+.-|..-. ....
T Consensus 21 ~~~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~-G~k-ViiS~GG~~g~~~~~~~~~~~~~~~a~~~ 98 (294)
T cd06543 21 AAATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAA-GGD-VIVSFGGASGTPLATSCTSADQLAAAYQK 98 (294)
T ss_pred HHHcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHc-CCe-EEEEecCCCCCccccCcccHHHHHHHHHH
Confidence 345676665542 3566542 2345667777774 774 77775553211 1234
Q ss_pred HHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE--ec-CCCHhHHHHHHHHHhhCCCe
Q 022377 79 KLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV--MR-GFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 79 ~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi--~~-~~n~~~i~~i~~~~~~~g~~ 155 (298)
-+...+++.|-|.+.++... .....++..++|+.|++..- .+.+.+++ .+ |.+. +=.++++.+.+.|+.
T Consensus 99 ~i~~y~~dgiDfDiE~~~~~------d~~~~~~~~~al~~Lq~~~p-~l~vs~Tlp~~p~gl~~-~g~~~l~~a~~~Gv~ 170 (294)
T cd06543 99 VIDAYGLTHLDFDIEGGALT------DTAAIDRRAQALALLQKEYP-DLKISFTLPVLPTGLTP-DGLNVLEAAAANGVD 170 (294)
T ss_pred HHHHhCCCeEEEeccCCccc------cchhHHHHHHHHHHHHHHCC-CcEEEEecCCCCCCCCh-hHHHHHHHHHHcCCC
Confidence 44556899999999886421 22346788889999988643 45555544 33 2222 334788889999998
Q ss_pred eEEEeeecCC
Q 022377 156 IRFIEFMPFD 165 (298)
Q Consensus 156 ~~~~~~~p~~ 165 (298)
+.++++|++.
T Consensus 171 ~d~VNiMtmD 180 (294)
T cd06543 171 LDTVNIMTMD 180 (294)
T ss_pred cceeeeeeec
Confidence 8899999864
No 255
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=79.26 E-value=27 Score=29.44 Aligned_cols=96 Identities=20% Similarity=0.260 Sum_probs=63.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCc-cCcccc-HHHHHHHHhccCCCCcEEEEeCccch---------HhhHHHHHH
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGE-PTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTL---------ARKLPKLKE 82 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGE-Pll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll---------~~~~~~l~~ 82 (298)
-|.+.-+..+++-+.++ +..|.|.+|- ||+..+ +.+-++++++. ++ .+..-|++. ++.+....+
T Consensus 27 g~~p~f~~D~~~vagdy-VDfvKfgwGT~~Li~kd~V~ekid~y~e~-~i---~v~pGGtlfe~a~~~~kvdeyl~e~~~ 101 (258)
T COG1809 27 GLGPRFVEDVLKVAGDY-VDFVKFGWGTSSLIDKDQVKEKIDMYKEN-DI---YVFPGGTLFEIAYSQDKVDEYLNEAKE 101 (258)
T ss_pred CCChHHHHHHHHhhhhh-eeeeeecccccccccHHHHHHHHHHHHHc-Cc---eecCCceEEEeehhcccHHHHHHHHHH
Confidence 47777777777766554 5788888888 577777 55999999885 54 355666643 244566677
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCC
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGY 124 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~ 124 (298)
.|++.|.|| +|.-+- +-+.--+.|+.+.+.|+
T Consensus 102 lGfe~iEIS-~G~i~m---------~~eek~~lIe~a~d~Gf 133 (258)
T COG1809 102 LGFEAIEIS-NGTIPM---------STEEKCRLIERAVDEGF 133 (258)
T ss_pred cCccEEEec-CCeeec---------chHHHHHHHHHHHhccc
Confidence 788888888 554322 23444556666666666
No 256
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=79.25 E-value=10 Score=34.15 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCC-------ccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcC-
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGG-------EPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESG- 84 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGG-------EPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~- 84 (298)
-++.++..++++.+.+.|+..|.+++| .|.-.....+.++.+++..++ -|.++|.+. .+.++.+.+.+
T Consensus 237 g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~i---PVi~~G~i~t~~~a~~~l~~g~ 313 (336)
T cd02932 237 GWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAGI---PVIAVGLITDPEQAEAILESGR 313 (336)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCCC---CEEEeCCCCCHHHHHHHHHcCC
Confidence 356888889999998888888888855 233233345666777664344 355667665 56677777766
Q ss_pred CCeEEEe
Q 022377 85 LTSVNIS 91 (298)
Q Consensus 85 ~~~v~iS 91 (298)
.|.|++.
T Consensus 314 aD~V~~g 320 (336)
T cd02932 314 ADLVALG 320 (336)
T ss_pred CCeehhh
Confidence 6766654
No 257
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=79.06 E-value=2.3 Score=31.02 Aligned_cols=49 Identities=27% Similarity=0.276 Sum_probs=36.8
Q ss_pred EEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch--HhhHHHHHHcCCC
Q 022377 34 KIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL--ARKLPKLKESGLT 86 (298)
Q Consensus 34 ~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll--~~~~~~l~~~~~~ 86 (298)
.|.+.|++| -|.-.+.++.+++. +.. +.+.||.+.. .+..++|...|+.
T Consensus 7 Gvl~~g~~~--ipga~e~l~~L~~~-g~~-~~~lTNns~~s~~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 7 GVLYNGNEP--IPGAVEALDALRER-GKP-VVFLTNNSSRSREEYAKKLKKLGIP 57 (101)
T ss_dssp TTSEETTEE---TTHHHHHHHHHHT-TSE-EEEEES-SSS-HHHHHHHHHHTTTT
T ss_pred cEeEeCCCc--CcCHHHHHHHHHHc-CCC-EEEEeCCCCCCHHHHHHHHHhcCcC
Confidence 344557887 57788999999995 885 9999998866 3578999888877
No 258
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=78.97 E-value=17 Score=30.45 Aligned_cols=75 Identities=13% Similarity=0.154 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccCc-------------cccHH-HHHHHHhccCCCCcEEEEeCccc-----hHhh
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTGGEPTV-------------RKDIE-EACFHLSKLKGLKTLAMTTNGLT-----LARK 76 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tGGEPll-------------~~~~~-~ii~~~~~~~~~~~v~i~TNG~l-----l~~~ 76 (298)
+++++.+....+.+.|...|.+.+|=|.. ++++. ++++.+++..++. +.+-.+... ..+.
T Consensus 65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~-v~vk~r~~~~~~~~~~~~ 143 (231)
T cd02801 65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIP-VTVKIRLGWDDEEETLEL 143 (231)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCC-EEEEEeeccCCchHHHHH
Confidence 57889999998888899999997665542 56654 9999988754543 665444322 1245
Q ss_pred HHHHHHcCCCeEEEe
Q 022377 77 LPKLKESGLTSVNIS 91 (298)
Q Consensus 77 ~~~l~~~~~~~v~iS 91 (298)
++.+.+.|++.|.++
T Consensus 144 ~~~l~~~Gvd~i~v~ 158 (231)
T cd02801 144 AKALEDAGASALTVH 158 (231)
T ss_pred HHHHHHhCCCEEEEC
Confidence 677888899988775
No 259
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=78.92 E-value=96 Score=33.11 Aligned_cols=157 Identities=13% Similarity=0.126 Sum_probs=103.3
Q ss_pred CCCCCHHHHHHHHHHHHhC--CCCEEEEcCCcc------CccccHHHHHHHHhcc-CCCCcEEEEeCccch---------
Q 022377 12 PQLLSLNEILRLAYLFVTS--GVDKIRLTGGEP------TVRKDIEEACFHLSKL-KGLKTLAMTTNGLTL--------- 73 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~--~~~~v~~tGGEP------ll~~~~~~ii~~~~~~-~~~~~v~i~TNG~ll--------- 73 (298)
...|..+++..++..+.+. |...+-..||-- +|+.+=++-++.+++. ++.. +.+...|..+
T Consensus 547 atr~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~-~qml~Rg~n~vgy~~ypd~ 625 (1143)
T TIGR01235 547 ATRVRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNIL-FQMLLRGANGVGYTNYPDN 625 (1143)
T ss_pred hhCCCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCc-eeeeeccccccCccCCCHH
Confidence 3568899999999999884 788888888864 3444444555556553 4564 7777777632
Q ss_pred --HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec--------CCCHhHHH
Q 022377 74 --ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR--------GFNDDEIC 143 (298)
Q Consensus 74 --~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~--------~~n~~~i~ 143 (298)
...++...+.|++.+.| +|+.+ ..+.+...++.+++.|. .+...++++- -++.+.+.
T Consensus 626 vv~~f~~~~~~~Gidifri-fD~lN-----------~~~n~~~~~~~~~~~g~-~~~~~i~yt~~~~d~~~~~~~l~y~~ 692 (1143)
T TIGR01235 626 VVKYFVKQAAQGGIDIFRV-FDSLN-----------WVENMRVGMDAVAEAGK-VVEAAICYTGDILDPARPKYDLKYYT 692 (1143)
T ss_pred HHHHHHHHHHHcCCCEEEE-CccCc-----------CHHHHHHHHHHHHHcCC-EEEEEEEEeccCCCcCCCCCCHHHHH
Confidence 23466777889997777 67764 24667788888999998 8887777761 13456677
Q ss_pred HHHHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 144 DFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 144 ~i~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
++++-+.+.|++ .+.+....+-. .+....++...+++.+
T Consensus 693 ~~ak~l~~~Gad--~I~ikDt~Gll----~P~~~~~Lv~~lk~~~ 731 (1143)
T TIGR01235 693 NLAVELEKAGAH--ILGIKDMAGLL----KPAAAKLLIKALREKT 731 (1143)
T ss_pred HHHHHHHHcCCC--EEEECCCcCCc----CHHHHHHHHHHHHHhc
Confidence 777777788875 33333332211 1123456667777665
No 260
>PRK06769 hypothetical protein; Validated
Probab=78.78 E-value=16 Score=29.40 Aligned_cols=51 Identities=18% Similarity=0.097 Sum_probs=36.1
Q ss_pred ccCccccHHHHHHHHhccCCCCcEEEEeCccch-------HhhHHHHHHcCCCeEEEecC
Q 022377 41 EPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-------ARKLPKLKESGLTSVNISLD 93 (298)
Q Consensus 41 EPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-------~~~~~~l~~~~~~~v~iSld 93 (298)
+.-+.|+..++++++++. |+. +.+.||.... ......+...+++.+-+|..
T Consensus 26 ~~~~~pgv~e~L~~Lk~~-G~~-l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 83 (173)
T PRK06769 26 SFTLFPFTKASLQKLKAN-HIK-IFSFTNQPGIADGIATIADFVQELKGFGFDDIYLCPH 83 (173)
T ss_pred HeEECCCHHHHHHHHHHC-CCE-EEEEECCchhcCCcCCHHHHHHHHHhCCcCEEEECcC
Confidence 344578899999999984 985 9999997632 12344466667877766654
No 261
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=78.74 E-value=27 Score=31.67 Aligned_cols=47 Identities=28% Similarity=0.290 Sum_probs=37.7
Q ss_pred CccccHHHHHHHHhccCCCCcEEEEeCccchH-------hhHHHHHHcCCCeEEEe
Q 022377 43 TVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA-------RKLPKLKESGLTSVNIS 91 (298)
Q Consensus 43 ll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~-------~~~~~l~~~~~~~v~iS 91 (298)
+-..++.+.++++.+. |.+ +.+++|..+.+ +.++.+.+.|+|.|.++
T Consensus 46 fs~~~l~e~i~~ah~~-gkk-~~V~~N~~~~~~~~~~~~~~l~~l~e~GvDaviv~ 99 (347)
T COG0826 46 FSVEDLAEAVELAHSA-GKK-VYVAVNTLLHNDELETLERYLDRLVELGVDAVIVA 99 (347)
T ss_pred CCHHHHHHHHHHHHHc-CCe-EEEEeccccccchhhHHHHHHHHHHHcCCCEEEEc
Confidence 4456688999999995 885 88889987653 34788899999999998
No 262
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=78.56 E-value=41 Score=28.62 Aligned_cols=112 Identities=14% Similarity=0.199 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhCCCCEEEEc--CCc--cCccccHHHHHHHHhccCCCC-cEEE-EeCccchHhhHHHHHHcCCCeEEE
Q 022377 17 LNEILRLAYLFVTSGVDKIRLT--GGE--PTVRKDIEEACFHLSKLKGLK-TLAM-TTNGLTLARKLPKLKESGLTSVNI 90 (298)
Q Consensus 17 ~e~~~~~i~~~~~~~~~~v~~t--GGE--Pll~~~~~~ii~~~~~~~~~~-~v~i-~TNG~ll~~~~~~l~~~~~~~v~i 90 (298)
.-.+.+-++++.+ ++..+++- -|. |-+... .++++.+++..++. .+.+ ++| -.+.++.+.++|.+.|.|
T Consensus 14 ~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg-~~~i~~ir~~t~~~~DvHLMv~~---P~~~i~~~~~aGad~it~ 88 (229)
T PRK09722 14 LLKFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLS-PFFVSQVKKLASKPLDVHLMVTD---PQDYIDQLADAGADFITL 88 (229)
T ss_pred HHHHHHHHHHHHh-CCCEEEEecccCccCCCcccC-HHHHHHHHhcCCCCeEEEEEecC---HHHHHHHHHHcCCCEEEE
Confidence 3455666777766 77776663 354 433322 24555665532321 2333 233 245789999999999988
Q ss_pred ecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH
Q 022377 91 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 91 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
..++.. ....+.|+.++++|. ++ ..++.|+...+.+..++..+
T Consensus 89 H~Ea~~-------------~~~~~~i~~Ik~~G~-ka--GlalnP~T~~~~l~~~l~~v 131 (229)
T PRK09722 89 HPETIN-------------GQAFRLIDEIRRAGM-KV--GLVLNPETPVESIKYYIHLL 131 (229)
T ss_pred CccCCc-------------chHHHHHHHHHHcCC-CE--EEEeCCCCCHHHHHHHHHhc
Confidence 887532 123467788888898 65 45666754555666555533
No 263
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=78.47 E-value=54 Score=29.97 Aligned_cols=58 Identities=12% Similarity=0.218 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccC-cccc-HHHHHHHHhccCCCCcEEE-EeCccchHhhH
Q 022377 18 NEILRLAYLFVTSGVDKIRLTGGEPT-VRKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKL 77 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~~v~~tGGEPl-l~~~-~~~ii~~~~~~~~~~~v~i-~TNG~ll~~~~ 77 (298)
+.+...++.+++.|. .|.++.-... ..++ +.++++.+.+. |...+.+ .|.|...++.+
T Consensus 112 ~~~~~~i~~ak~~G~-~v~~~~eda~r~~~~~l~~~~~~~~~~-g~~~i~l~DT~G~~~P~~v 172 (363)
T TIGR02090 112 EKAVEAVEYAKEHGL-IVEFSAEDATRTDIDFLIKVFKRAEEA-GADRINIADTVGVLTPQKM 172 (363)
T ss_pred HHHHHHHHHHHHcCC-EEEEEEeecCCCCHHHHHHHHHHHHhC-CCCEEEEeCCCCccCHHHH
Confidence 334445555555663 3444421211 1233 33666666553 5443333 37776665443
No 264
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=78.19 E-value=48 Score=29.22 Aligned_cols=120 Identities=16% Similarity=0.150 Sum_probs=60.4
Q ss_pred HHHHHHHHHhCCCCE---EEEcCCccCc---ccc-HHHHHHHHhccCCCCcEEE-EeCccchHhh----HHHHHHcCCCe
Q 022377 20 ILRLAYLFVTSGVDK---IRLTGGEPTV---RKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARK----LPKLKESGLTS 87 (298)
Q Consensus 20 ~~~~i~~~~~~~~~~---v~~tGGEPll---~~~-~~~ii~~~~~~~~~~~v~i-~TNG~ll~~~----~~~l~~~~~~~ 87 (298)
+..+++.+++.|... |..+-|-|.- .++ +.++++.+.+. |...+.+ .|.|...+.. ++.+++. +..
T Consensus 122 ~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~d~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~ 199 (287)
T PRK05692 122 FEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFAL-GCYEISLGDTIGVGTPGQVRAVLEAVLAE-FPA 199 (287)
T ss_pred HHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHc-CCcEEEeccccCccCHHHHHHHHHHHHHh-CCC
Confidence 556666666666431 2222233332 334 44777777764 6554443 4788776543 3444432 333
Q ss_pred EEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec-C--------CCHhHHHHHHHHHhhCCC
Q 022377 88 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR-G--------FNDDEICDFVELTRDRPI 154 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~-~--------~n~~~i~~i~~~~~~~g~ 154 (298)
+.|+++..+ ++-..+.|.-.+.++|+.. +.+++.- | .---.+++++..+...|+
T Consensus 200 ~~i~~H~Hn-----------~~Gla~AN~laA~~aG~~~--id~s~~GlGecpfa~g~aGN~~~E~lv~~L~~~g~ 262 (287)
T PRK05692 200 ERLAGHFHD-----------TYGQALANIYASLEEGITV--FDASVGGLGGCPYAPGASGNVATEDVLYMLHGLGI 262 (287)
T ss_pred CeEEEEecC-----------CCCcHHHHHHHHHHhCCCE--EEEEccccCCCCCCCCccccccHHHHHHHHHhcCC
Confidence 556665532 1224555555556777732 3443330 1 112346666666666565
No 265
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=78.09 E-value=62 Score=31.67 Aligned_cols=98 Identities=22% Similarity=0.349 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEc--CCccCcccc-HHHHHHHHhccCCCCcEEEEe---CccchHhhHHHHHHcCCCeE
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLT--GGEPTVRKD-IEEACFHLSKLKGLKTLAMTT---NGLTLARKLPKLKESGLTSV 88 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~t--GGEPll~~~-~~~ii~~~~~~~~~~~v~i~T---NG~ll~~~~~~l~~~~~~~v 88 (298)
-+.+.+.++++++.+.|+..|+|. .| ++.|. +.++++.+++..++. +.+.| .|.-+...+..+ ++|++.|
T Consensus 146 ~~~~~~~~~~~~~~~~Gad~I~i~Dt~G--~~~P~~v~~lv~~lk~~~~~p-i~~H~Hnt~Gla~An~laAv-eaGa~~v 221 (582)
T TIGR01108 146 HTLETYLDLAEELLEMGVDSICIKDMAG--ILTPKAAYELVSALKKRFGLP-VHLHSHATTGMAEMALLKAI-EAGADGI 221 (582)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCCC--CcCHHHHHHHHHHHHHhCCCc-eEEEecCCCCcHHHHHHHHH-HhCCCEE
Confidence 578888899999988998888885 23 35554 558888877754553 66553 343334444444 6699999
Q ss_pred EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCC
Q 022377 89 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGY 124 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~ 124 (298)
..|+.|... ..|..+.+.++.+++ ..|+
T Consensus 222 d~ai~GlG~-----~tGn~~le~vv~~L~---~~g~ 249 (582)
T TIGR01108 222 DTAISSMSG-----GTSHPPTETMVAALR---GTGY 249 (582)
T ss_pred Eeccccccc-----cccChhHHHHHHHHH---hcCC
Confidence 999999764 234344666666665 3566
No 266
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=77.87 E-value=50 Score=29.31 Aligned_cols=135 Identities=14% Similarity=0.167 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc-CCccCccccHHHHHHHHhccCC-CCcEEEEeCccch-Hh---hHHHHHHcCCCeEE
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLT-GGEPTVRKDIEEACFHLSKLKG-LKTLAMTTNGLTL-AR---KLPKLKESGLTSVN 89 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~t-GGEPll~~~~~~ii~~~~~~~~-~~~v~i~TNG~ll-~~---~~~~l~~~~~~~v~ 89 (298)
+++++.+.++++.+.|...+.+- |+.| ....+.++.+++..+ + .+.+..|+... ++ .++.+.+.++.++.
T Consensus 134 ~~~~~~~~~~~~~~~Gf~~iKik~g~~~---~~d~~~v~~lr~~~g~~-~l~vD~n~~~~~~~A~~~~~~l~~~~l~~iE 209 (316)
T cd03319 134 TPEAMAAAAKKAAKRGFPLLKIKLGGDL---EDDIERIRAIREAAPDA-RLRVDANQGWTPEEAVELLRELAELGVELIE 209 (316)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEeCCCh---hhHHHHHHHHHHhCCCC-eEEEeCCCCcCHHHHHHHHHHHHhcCCCEEE
Confidence 56778788888888898888874 6554 334577777776433 6 48899998654 32 34566667787776
Q ss_pred EecCCCCHHhhhhhcCCC--------cHHHHHHHHHHHHHcC-CCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeE
Q 022377 90 ISLDTLVPAKFEFLTRRK--------GHEKVMESINAAIEVG-YNPVKVNCVVMRGFNDDEICDFVELTRDRPINIR 157 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~--------~~~~v~~~i~~l~~~g-~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~ 157 (298)
=-+...+-+.+.+++... +... ...++.+.+.+ ..-+.+..... | -..+..++++++...|+.+.
T Consensus 210 eP~~~~d~~~~~~L~~~~~ipIa~~E~~~~-~~~~~~~~~~~~~d~v~~~~~~~-G-Gi~~~~~~~~~a~~~gi~~~ 283 (316)
T cd03319 210 QPVPAGDDDGLAYLRDKSPLPIMADESCFS-AADAARLAGGGAYDGINIKLMKT-G-GLTEALRIADLARAAGLKVM 283 (316)
T ss_pred CCCCCCCHHHHHHHHhcCCCCEEEeCCCCC-HHHHHHHHhcCCCCEEEEecccc-C-CHHHHHHHHHHHHHcCCCEE
Confidence 444443444555554221 1111 12233444432 31122222222 1 35667777777777777543
No 267
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=77.84 E-value=14 Score=28.37 Aligned_cols=78 Identities=22% Similarity=0.268 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcC
Q 022377 5 GVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG 84 (298)
Q Consensus 5 ~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~ 84 (298)
|++-..-+...|+|++ ++.+.+.+..-|.+|+=-...-..+.++++.+++. +...+.+.--|...++..+.|.++|
T Consensus 30 GfeVi~lg~~~s~e~~---v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~-g~~~i~vivGG~~~~~~~~~l~~~G 105 (132)
T TIGR00640 30 GFDVDVGPLFQTPEEI---ARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKL-GRPDILVVVGGVIPPQDFDELKEMG 105 (132)
T ss_pred CcEEEECCCCCCHHHH---HHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhc-CCCCCEEEEeCCCChHhHHHHHHCC
Confidence 3333344455667765 44444566677777763322223355666666663 4423555566656666677788878
Q ss_pred CC
Q 022377 85 LT 86 (298)
Q Consensus 85 ~~ 86 (298)
++
T Consensus 106 vd 107 (132)
T TIGR00640 106 VA 107 (132)
T ss_pred CC
Confidence 77
No 268
>PHA02031 putative DnaG-like primase
Probab=77.70 E-value=19 Score=31.17 Aligned_cols=82 Identities=18% Similarity=0.083 Sum_probs=57.4
Q ss_pred CCccCccccHHHHHHH--HhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHH
Q 022377 39 GGEPTVRKDIEEACFH--LSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMES 115 (298)
Q Consensus 39 GGEPll~~~~~~ii~~--~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~ 115 (298)
.+.-.+-.++.+++.. +.+ .|+. -.+.|-||.+ ++.+..|...+.+.|.+.+||. +. +-+.++++
T Consensus 159 ~~~vIlvEGYmDVI~l~~a~~-aG~~-naVA~LGTALT~~q~~~L~r~~~~~Vil~fDgD-~A---------G~~Aa~ra 226 (266)
T PHA02031 159 PRPVVLTEDYLSALKVRWACN-KPEV-FAVALLGTRLRDRLAAILLQQTCPRVLIFLDGD-PA---------GVDGSAGA 226 (266)
T ss_pred CCeEEEEcCcHHHHHHHHHHh-cCcc-eEEECCcccCCHHHHHHHHhcCCCCEEEEeCCC-HH---------HHHHHHHH
Confidence 3444444556666643 112 4885 8899999999 5678888886678899999994 32 35678888
Q ss_pred HHHHHHcCCCCEEEEEEEec
Q 022377 116 INAAIEVGYNPVKVNCVVMR 135 (298)
Q Consensus 116 i~~l~~~g~~~v~i~~vi~~ 135 (298)
++.+...++ .+ .++..|
T Consensus 227 ~~~l~~~~~-~v--~vv~lP 243 (266)
T PHA02031 227 MRRLRPLLI-EG--QVIITP 243 (266)
T ss_pred HHHHHHcCC-ce--EEEECC
Confidence 999988887 54 555555
No 269
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=77.28 E-value=43 Score=28.23 Aligned_cols=113 Identities=12% Similarity=0.211 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc--CCc--cCccccHHHHHHHHhcc-CCCC-cEEEEeCccchHhhHHHHHHcCCCeEE
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLT--GGE--PTVRKDIEEACFHLSKL-KGLK-TLAMTTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~t--GGE--Pll~~~~~~ii~~~~~~-~~~~-~v~i~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
++..+.+-++++.+.|+..+++- -|. |-+... .++++.+++. ..+. .+.+-+. ...+.++.+.++|.+.|.
T Consensus 10 d~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg-~~~i~~i~~~~~~~~~dvHLMv~--~p~~~i~~~~~~gad~i~ 86 (220)
T PRK08883 10 DFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFG-APICKALRDYGITAPIDVHLMVK--PVDRIIPDFAKAGASMIT 86 (220)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCcccCccccC-HHHHHHHHHhCCCCCEEEEeccC--CHHHHHHHHHHhCCCEEE
Confidence 44566777888888888776663 454 433221 2445555442 1221 2443222 134578999999999998
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHH
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVEL 148 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~ 148 (298)
|...+. +...+.++.+++.|+ ++ ...+.|+...+.+..+++.
T Consensus 87 ~H~Ea~--------------~~~~~~l~~ik~~g~-k~--GlalnP~Tp~~~i~~~l~~ 128 (220)
T PRK08883 87 FHVEAS--------------EHVDRTLQLIKEHGC-QA--GVVLNPATPLHHLEYIMDK 128 (220)
T ss_pred EcccCc--------------ccHHHHHHHHHHcCC-cE--EEEeCCCCCHHHHHHHHHh
Confidence 887752 124566777888888 55 4456665455666655553
No 270
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=77.17 E-value=9 Score=34.62 Aligned_cols=75 Identities=16% Similarity=0.187 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCcc----Cc-ccc-HHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcC-C
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEP----TV-RKD-IEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESG-L 85 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEP----ll-~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~-~ 85 (298)
-++.++...+++.+.+.|+..|.+++|-. .- .+. ..++.+.+++..++ -+..+|.+. .+.++++++.+ .
T Consensus 223 G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~i---pVi~~G~i~~~~~a~~~l~~g~~ 299 (337)
T PRK13523 223 GLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANI---ATGAVGLITSGAQAEEILQNNRA 299 (337)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCC---cEEEeCCCCCHHHHHHHHHcCCC
Confidence 46789999999999999999999998751 11 122 34677777764344 344566554 56777777766 6
Q ss_pred CeEEEe
Q 022377 86 TSVNIS 91 (298)
Q Consensus 86 ~~v~iS 91 (298)
|.|.+.
T Consensus 300 D~V~~g 305 (337)
T PRK13523 300 DLIFIG 305 (337)
T ss_pred ChHHhh
Confidence 765554
No 271
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=77.06 E-value=78 Score=31.09 Aligned_cols=117 Identities=14% Similarity=0.274 Sum_probs=73.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEc--CCccCcccc-HHHHHHHHhccCCCCcEEEEeC---ccchHhhHHHHHHcCCCe
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLT--GGEPTVRKD-IEEACFHLSKLKGLKTLAMTTN---GLTLARKLPKLKESGLTS 87 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~t--GGEPll~~~-~~~ii~~~~~~~~~~~v~i~TN---G~ll~~~~~~l~~~~~~~ 87 (298)
..+.+.+.++++++.+.|+..|+|. .| ++.|. +.++++.+++..++. +.+.|. |.-+...+.. .++|++.
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~IkDtaG--~l~P~~v~~lv~alk~~~~ip-i~~H~Hnt~Gla~an~laA-ieaGad~ 225 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIAIKDMAG--LLTPTVTVELYAGLKQATGLP-VHLHSHSTSGLASICHYEA-VLAGCNH 225 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCccc--CCCHHHHHHHHHHHHhhcCCE-EEEEeCCCCCcHHHHHHHH-HHhCCCE
Confidence 5788889999999999999888885 33 45565 558888887755664 776644 4333333444 4679999
Q ss_pred EEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 88 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
|..|+.|...- .|..+.+.++..++ ..|+ .. +.+.+.+.++.+++.+
T Consensus 226 iD~ai~glGg~-----tGn~~tE~lv~~L~---~~g~-~t--------gidl~~l~~~~~~~~~ 272 (596)
T PRK14042 226 IDTAISSFSGG-----ASHPPTEALVAALT---DTPY-DT--------ELDLNILLEIDDYFKA 272 (596)
T ss_pred EEeccccccCC-----CCcHhHHHHHHHHH---hcCC-CC--------CCCHHHHHHHHHHHHH
Confidence 99999987532 23233555555544 4555 33 3455555555555443
No 272
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=76.68 E-value=20 Score=32.03 Aligned_cols=83 Identities=18% Similarity=0.298 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHHHh-------CCCCEEEEcCCccCc----------------------ccc-HHHHHHHHhccC-
Q 022377 11 KPQLLSLNEILRLAYLFVT-------SGVDKIRLTGGEPTV----------------------RKD-IEEACFHLSKLK- 59 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~-------~~~~~v~~tGGEPll----------------------~~~-~~~ii~~~~~~~- 59 (298)
...+||.+|+.++++++.+ .|...|.+.+|-..| +.. +.++++.+++..
T Consensus 127 ~~~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g 206 (327)
T cd02803 127 PPREMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVG 206 (327)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcC
Confidence 3468999999999875544 688889888763321 112 348888887743
Q ss_pred -CCCcEEEEeCcc-------chH---hhHHHHHHcCCCeEEEecCC
Q 022377 60 -GLKTLAMTTNGL-------TLA---RKLPKLKESGLTSVNISLDT 94 (298)
Q Consensus 60 -~~~~v~i~TNG~-------ll~---~~~~~l~~~~~~~v~iSldg 94 (298)
++. +.+--|+. -.+ +.++.+.+.|++.|.+|--.
T Consensus 207 ~d~~-i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 207 PDFP-VGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred CCce-EEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 443 55444432 122 34677888899999988544
No 273
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=76.52 E-value=20 Score=32.61 Aligned_cols=82 Identities=21% Similarity=0.270 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHHHHHHh-------CCCCEEEEcCC---------ccCcc-------------ccHH-HHHHHHhccCCC
Q 022377 12 PQLLSLNEILRLAYLFVT-------SGVDKIRLTGG---------EPTVR-------------KDIE-EACFHLSKLKGL 61 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-------~~~~~v~~tGG---------EPll~-------------~~~~-~ii~~~~~~~~~ 61 (298)
...||.+||.++++.+.+ .|...|.|.|+ -|..+ ..+. ++++.+++..|-
T Consensus 124 p~~mt~~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~ 203 (353)
T cd02930 124 PRELSEEEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGE 203 (353)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 467999999998875544 57888888775 45543 3444 888888885332
Q ss_pred C-cEEEEeC-------ccchH---hhHHHHHHcCCCeEEEecC
Q 022377 62 K-TLAMTTN-------GLTLA---RKLPKLKESGLTSVNISLD 93 (298)
Q Consensus 62 ~-~v~i~TN-------G~ll~---~~~~~l~~~~~~~v~iSld 93 (298)
. .+.+-.| |.-.+ +.++.|.++|+|.|.||.-
T Consensus 204 d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g 246 (353)
T cd02930 204 DFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIG 246 (353)
T ss_pred CceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 1 1332222 22333 3456777789999999863
No 274
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=76.18 E-value=62 Score=29.54 Aligned_cols=89 Identities=15% Similarity=0.159 Sum_probs=42.4
Q ss_pred HHHHHHHHhCCCCEEEEcCCc-cCcccc-HHHHHHHHhccCCCCcEE-EEeCccchHhhH----HHHHHcCCCeEEEecC
Q 022377 21 LRLAYLFVTSGVDKIRLTGGE-PTVRKD-IEEACFHLSKLKGLKTLA-MTTNGLTLARKL----PKLKESGLTSVNISLD 93 (298)
Q Consensus 21 ~~~i~~~~~~~~~~v~~tGGE-Pll~~~-~~~ii~~~~~~~~~~~v~-i~TNG~ll~~~~----~~l~~~~~~~v~iSld 93 (298)
...++.+++.| ..|.|+-=. +-..++ +.++++.+.+. |...+. ..|+|...++.+ +.+++ .++ +.|+++
T Consensus 116 ~~~i~~ak~~g-~~v~~~~ed~~r~~~~~l~~~~~~~~~~-Ga~~i~l~DT~G~~~P~~v~~lv~~l~~-~~~-v~l~~H 191 (365)
T TIGR02660 116 ARLVSFARDRG-LFVSVGGEDASRADPDFLVELAEVAAEA-GADRFRFADTVGILDPFSTYELVRALRQ-AVD-LPLEMH 191 (365)
T ss_pred HHHHHHHHhCC-CEEEEeecCCCCCCHHHHHHHHHHHHHc-CcCEEEEcccCCCCCHHHHHHHHHHHHH-hcC-CeEEEE
Confidence 35555555566 345554211 122234 33666666663 544333 347777665433 33333 223 455555
Q ss_pred CCCHHhhhhhcCCCcHHHHHHHHHHHHHcCC
Q 022377 94 TLVPAKFEFLTRRKGHEKVMESINAAIEVGY 124 (298)
Q Consensus 94 g~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~ 124 (298)
+.+ ++--.+.|.-.+.++|.
T Consensus 192 ~HN-----------d~GlA~ANalaA~~aGa 211 (365)
T TIGR02660 192 AHN-----------DLGMATANTLAAVRAGA 211 (365)
T ss_pred ecC-----------CCChHHHHHHHHHHhCC
Confidence 532 12344555555556666
No 275
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=76.00 E-value=72 Score=30.14 Aligned_cols=98 Identities=17% Similarity=0.331 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEc--CCccCcccc-HHHHHHHHhccCCCCcEEEEe---CccchHhhHHHHHHcCCCeE
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLT--GGEPTVRKD-IEEACFHLSKLKGLKTLAMTT---NGLTLARKLPKLKESGLTSV 88 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~t--GGEPll~~~-~~~ii~~~~~~~~~~~v~i~T---NG~ll~~~~~~l~~~~~~~v 88 (298)
-+.+.+.++++++.+.|+..|+|. .| ++.|. ..++++.+++..++. +.+.+ .|.-+...+..+ ++|++.|
T Consensus 151 ~~~~~~~~~a~~l~~~Gad~I~i~Dt~G--~l~P~~v~~lv~alk~~~~~p-i~~H~Hnt~GlA~AN~laAi-eaGad~v 226 (448)
T PRK12331 151 HTIDYFVKLAKEMQEMGADSICIKDMAG--ILTPYVAYELVKRIKEAVTVP-LEVHTHATSGIAEMTYLKAI-EAGADII 226 (448)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCCC--CCCHHHHHHHHHHHHHhcCCe-EEEEecCCCCcHHHHHHHHH-HcCCCEE
Confidence 567777888888888888888884 33 44554 447777776644553 55543 343333444444 6688888
Q ss_pred EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCC
Q 022377 89 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGY 124 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~ 124 (298)
..|+.+..+- .|..+.+.++..++ ..|+
T Consensus 227 D~sv~glg~g-----aGN~~tE~lv~~L~---~~g~ 254 (448)
T PRK12331 227 DTAISPFAGG-----TSQPATESMVAALQ---DLGY 254 (448)
T ss_pred EeeccccCCC-----cCCHhHHHHHHHHH---hcCC
Confidence 8888876432 33333555555554 3466
No 276
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=75.97 E-value=24 Score=31.75 Aligned_cols=82 Identities=22% Similarity=0.259 Sum_probs=53.1
Q ss_pred CCCCHHHHHHHHHHHHh-------CCCCEEEEcCCc---------cCcc-------------ccH-HHHHHHHhccC--C
Q 022377 13 QLLSLNEILRLAYLFVT-------SGVDKIRLTGGE---------PTVR-------------KDI-EEACFHLSKLK--G 60 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~-------~~~~~v~~tGGE---------Pll~-------------~~~-~~ii~~~~~~~--~ 60 (298)
.+||.++|..+++++.+ .|...|.+.+|- |..+ +++ .++++.+++.. +
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d 221 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPED 221 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCC
Confidence 67999999988875544 678888887643 4332 223 48888888753 4
Q ss_pred CCcEEEEeC-------ccchHh---hHHHHHHcCCCeEEEecCCC
Q 022377 61 LKTLAMTTN-------GLTLAR---KLPKLKESGLTSVNISLDTL 95 (298)
Q Consensus 61 ~~~v~i~TN-------G~ll~~---~~~~l~~~~~~~v~iSldg~ 95 (298)
+. +.+--| |.-.++ .+..|.+.+++.|.||.-+.
T Consensus 222 ~~-v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~ 265 (336)
T cd02932 222 KP-LFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSGGN 265 (336)
T ss_pred ce-EEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 43 555433 332332 35567777899999886543
No 277
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=74.85 E-value=46 Score=27.37 Aligned_cols=99 Identities=21% Similarity=0.232 Sum_probs=61.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc-CCCCcEEEEeCccchH-hhHHHHHHcCCCeEEEe
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTLAMTTNGLTLA-RKLPKLKESGLTSVNIS 91 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~-~~~~~v~i~TNG~ll~-~~~~~l~~~~~~~v~iS 91 (298)
..+.++..++++.+ +.++..|-+ |-|+..+.-.+.++.+++. .+.. +.+.+--.-.. ..++++.++|.+.|.+.
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~~iev--~~~l~~~~g~~~i~~l~~~~~~~~-i~~d~k~~d~~~~~~~~~~~~Gad~i~vh 83 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVDIIEI--GTPLIKNEGIEAVKEMKEAFPDRK-VLADLKTMDAGEYEAEQAFAAGADIVTVL 83 (206)
T ss_pred CCCHHHHHHHHHHc-ccCeeEEEe--CCHHHHHhCHHHHHHHHHHCCCCE-EEEEEeeccchHHHHHHHHHcCCCEEEEe
Confidence 46788899999888 666666655 6666655545677777664 2332 44433111111 24888999999988866
Q ss_pred cCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEE
Q 022377 92 LDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN 130 (298)
Q Consensus 92 ldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~ 130 (298)
.-.. . ..+.+.++.++++|+ ++.+.
T Consensus 84 ~~~~-~------------~~~~~~i~~~~~~g~-~~~~~ 108 (206)
T TIGR03128 84 GVAD-D------------ATIKGAVKAAKKHGK-EVQVD 108 (206)
T ss_pred ccCC-H------------HHHHHHHHHHHHcCC-EEEEE
Confidence 5431 1 234566777888888 66553
No 278
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=74.83 E-value=57 Score=28.46 Aligned_cols=145 Identities=18% Similarity=0.206 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHhCCCCE-EEE--cCCccCcccc-HHHHHHHHhccCCCCcEEE-EeCccchHhhH----HHHHHcCCC
Q 022377 16 SLNEILRLAYLFVTSGVDK-IRL--TGGEPTVRKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKL----PKLKESGLT 86 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~-v~~--tGGEPll~~~-~~~ii~~~~~~~~~~~v~i-~TNG~ll~~~~----~~l~~~~~~ 86 (298)
+.+.+...++.+++.|... +.+ +.+ +-..++ +.++++.+.+. |...+.+ .|.|.+.++.+ ..+++ .+.
T Consensus 116 ~~~~~~~~i~~ak~~G~~v~~~i~~~~~-~~~~~~~~~~~~~~~~~~-Ga~~i~l~DT~G~~~P~~v~~lv~~l~~-~~~ 192 (275)
T cd07937 116 DVRNLEVAIKAVKKAGKHVEGAICYTGS-PVHTLEYYVKLAKELEDM-GADSICIKDMAGLLTPYAAYELVKALKK-EVG 192 (275)
T ss_pred hHHHHHHHHHHHHHCCCeEEEEEEecCC-CCCCHHHHHHHHHHHHHc-CCCEEEEcCCCCCCCHHHHHHHHHHHHH-hCC
Confidence 4677888889888888432 222 233 444455 45888888884 6654554 59998886544 44443 244
Q ss_pred eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec-C--CCHhHHHHHHHHHhhCCCeeEEEeeec
Q 022377 87 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR-G--FNDDEICDFVELTRDRPINIRFIEFMP 163 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~-~--~n~~~i~~i~~~~~~~g~~~~~~~~~p 163 (298)
+.|++++.+ ++-..+.|...+.++|... +.+++.. | .--..+++++..+...|++.
T Consensus 193 -~~l~~H~Hn-----------d~GlA~aN~laA~~aGa~~--vd~sv~GlG~~aGN~~~E~l~~~L~~~g~~~------- 251 (275)
T cd07937 193 -LPIHLHTHD-----------TSGLAVATYLAAAEAGVDI--VDTAISPLSGGTSQPSTESMVAALRGTGRDT------- 251 (275)
T ss_pred -CeEEEEecC-----------CCChHHHHHHHHHHhCCCE--EEEecccccCCcCChhHHHHHHHHHccCCCC-------
Confidence 667776632 2335666666666778833 3444331 1 11245777887777776531
Q ss_pred CCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 164 FDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 164 ~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
..+.+......+.++.+.++|
T Consensus 252 ----~~dl~~l~~~~~~v~~~~~~~ 272 (275)
T cd07937 252 ----GLDLEKLEEISEYFEEVRKKY 272 (275)
T ss_pred ----CCCHHHHHHHHHHHHHHHHHh
Confidence 111122334556666666665
No 279
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=73.91 E-value=94 Score=30.53 Aligned_cols=116 Identities=17% Similarity=0.270 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEc--CCccCcccc-HHHHHHHHhccCCCCcEEEEeC---ccchHhhHHHHHHcCCCeE
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLT--GGEPTVRKD-IEEACFHLSKLKGLKTLAMTTN---GLTLARKLPKLKESGLTSV 88 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~t--GGEPll~~~-~~~ii~~~~~~~~~~~v~i~TN---G~ll~~~~~~l~~~~~~~v 88 (298)
-+.+.+.++++++.+.|+..|+|. -| ++.|. +.++++.+++..++. +.+.|. |.-+...+.. .++|.+.|
T Consensus 152 ~~~~~~~~~a~~l~~~Gad~i~i~Dt~G--~l~P~~~~~lv~~lk~~~~~p-i~~H~Hnt~GlA~An~laA-ieAGa~~v 227 (593)
T PRK14040 152 HTLQTWVDLAKQLEDMGVDSLCIKDMAG--LLKPYAAYELVSRIKKRVDVP-LHLHCHATTGLSTATLLKA-IEAGIDGV 227 (593)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCC--CcCHHHHHHHHHHHHHhcCCe-EEEEECCCCchHHHHHHHH-HHcCCCEE
Confidence 467888888888888888888885 23 35554 557777777644553 665543 3223333333 46689999
Q ss_pred EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 89 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
..++.|...- .|..+.+.++.+++ ..|+ .. +.+.+.+.++.+++.+
T Consensus 228 D~ai~glG~~-----~Gn~~le~vv~~L~---~~~~-~~--------gidl~~l~~is~~~~~ 273 (593)
T PRK14040 228 DTAISSMSMT-----YGHSATETLVATLE---GTER-DT--------GLDILKLEEIAAYFRE 273 (593)
T ss_pred Eecccccccc-----ccchhHHHHHHHHH---hcCC-Cc--------CCCHHHHHHHHHHHHH
Confidence 9999887542 24344666666664 3455 32 2455555555554443
No 280
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=73.89 E-value=31 Score=31.49 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=53.1
Q ss_pred CCCCCHHHHHHHHHHHHh-------CCCCEEEEcCCc---------cCcc-------------ccHH-HHHHHHhccC--
Q 022377 12 PQLLSLNEILRLAYLFVT-------SGVDKIRLTGGE---------PTVR-------------KDIE-EACFHLSKLK-- 59 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-------~~~~~v~~tGGE---------Pll~-------------~~~~-~ii~~~~~~~-- 59 (298)
..+||.+||.++++.+.+ .|...|.++++- |..+ ..|. ++++.+++.-
T Consensus 131 p~~mt~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~ 210 (361)
T cd04747 131 GREMTEADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGP 210 (361)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 467999999999876544 588899998776 5552 2344 8888888743
Q ss_pred CCCcEEEEeCc-----------cchHh---hHHHHHHcCCCeEEEecC
Q 022377 60 GLKTLAMTTNG-----------LTLAR---KLPKLKESGLTSVNISLD 93 (298)
Q Consensus 60 ~~~~v~i~TNG-----------~ll~~---~~~~l~~~~~~~v~iSld 93 (298)
++. +.+=.|+ .-.++ .+..|.+.|++.|.+|.-
T Consensus 211 d~~-v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g 257 (361)
T cd04747 211 DFP-IILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTR 257 (361)
T ss_pred CCe-EEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 343 5554443 11222 245566778898888764
No 281
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=73.05 E-value=61 Score=28.01 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=80.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccC---c---ccc-----HHHHHHHHhccCCCCcEEEEeCccchHh
Q 022377 7 DLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPT---V---RKD-----IEEACFHLSKLKGLKTLAMTTNGLTLAR 75 (298)
Q Consensus 7 ~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl---l---~~~-----~~~ii~~~~~~~~~~~v~i~TNG~ll~~ 75 (298)
+|-.....++.+++.+.+.+..+.|...|.+ ||+.+ . .++ +..+++.+++..++. +++.|--. +
T Consensus 12 SF~dg~~~~~~~~~~~~a~~~~~~GA~iIDI-G~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~p-lsiDT~~~---~ 86 (257)
T TIGR01496 12 SFSDGGRFLSVDKAVAHAERMLEEGADIIDV-GGESTRPGADRVSPEEELNRVVPVIKALRDQPDVP-ISVDTYRA---E 86 (257)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCe-EEEeCCCH---H
Confidence 4555667789999999999888999888888 55533 2 222 556777777644775 88887653 4
Q ss_pred hHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEE-ecCC--------C-H----hH
Q 022377 76 KLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVV-MRGF--------N-D----DE 141 (298)
Q Consensus 76 ~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi-~~~~--------n-~----~~ 141 (298)
.++.-.+.|.+ +-=|+.+.+ .+ +.++.+.++|. .+.+...- .+.. + . ..
T Consensus 87 vi~~al~~G~~-iINsis~~~------------~~---~~~~l~~~~~~-~vV~m~~~g~p~~~~~~~~~~~~~~~~~~~ 149 (257)
T TIGR01496 87 VARAALEAGAD-IINDVSGGQ------------DP---AMLEVAAEYGV-PLVLMHMRGTPRTMQENPHYEDVVEEVLRF 149 (257)
T ss_pred HHHHHHHcCCC-EEEECCCCC------------Cc---hhHHHHHHcCC-cEEEEeCCCCCcccccCCCcccHHHHHHHH
Confidence 45555566887 555666642 01 23344667777 55542211 1110 0 1 22
Q ss_pred HHHHHHHHhhCCCeeEEEeeec
Q 022377 142 ICDFVELTRDRPINIRFIEFMP 163 (298)
Q Consensus 142 i~~i~~~~~~~g~~~~~~~~~p 163 (298)
+.+.++.+.+.|++..-+-+=|
T Consensus 150 ~~~~i~~~~~~Gi~~~~iilDP 171 (257)
T TIGR01496 150 LEARAEELVAAGVAAERIILDP 171 (257)
T ss_pred HHHHHHHHHHcCCCHHHEEEEC
Confidence 5666666777888533333334
No 282
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=72.95 E-value=61 Score=27.92 Aligned_cols=134 Identities=15% Similarity=0.133 Sum_probs=77.6
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc-CCccCccccHHHHHHHHhccC--CCCcEEEEeCccch-Hh---hHHHHHHcCCCeE
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLT-GGEPTVRKDIEEACFHLSKLK--GLKTLAMTTNGLTL-AR---KLPKLKESGLTSV 88 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~t-GGEPll~~~~~~ii~~~~~~~--~~~~v~i~TNG~ll-~~---~~~~l~~~~~~~v 88 (298)
++++..+.++++.+.|...+.+- |+.| .+-.+.++.+++.. ++ .+.+..|+... ++ .++.+.+.++.++
T Consensus 85 ~~~~~~~~~~~~~~~G~~~~KiKvg~~~---~~d~~~v~~vr~~~g~~~-~l~vDan~~~~~~~a~~~~~~l~~~~i~~i 160 (265)
T cd03315 85 EPAEVAEEARRALEAGFRTFKLKVGRDP---ARDVAVVAALREAVGDDA-ELRVDANRGWTPKQAIRALRALEDLGLDYV 160 (265)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCH---HHHHHHHHHHHHhcCCCC-EEEEeCCCCcCHHHHHHHHHHHHhcCCCEE
Confidence 56777777888888898888775 5444 23346777777642 56 48899998654 32 3566777788888
Q ss_pred EEecCCCCHHhhhhhcCC--------CcHHHHHHHHHHHHHcC-CCCEEEEEEEecCCCHhHHHHHHHHHhhCCCee
Q 022377 89 NISLDTLVPAKFEFLTRR--------KGHEKVMESINAAIEVG-YNPVKVNCVVMRGFNDDEICDFVELTRDRPINI 156 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~--------~~~~~v~~~i~~l~~~g-~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~ 156 (298)
.-.+...+.+.+..++.. .+.... ..++.+.+.+ +.-+.+..... | -..+..++++.+...|+.+
T Consensus 161 EeP~~~~d~~~~~~l~~~~~ipia~dE~~~~~-~~~~~~i~~~~~d~v~~k~~~~-G-Gi~~~~~~~~~A~~~gi~~ 234 (265)
T cd03315 161 EQPLPADDLEGRAALARATDTPIMADESAFTP-HDAFRELALGAADAVNIKTAKT-G-GLTKAQRVLAVAEALGLPV 234 (265)
T ss_pred ECCCCcccHHHHHHHHhhCCCCEEECCCCCCH-HHHHHHHHhCCCCEEEEecccc-c-CHHHHHHHHHHHHHcCCcE
Confidence 877766555555555432 112111 2223333333 31122222222 1 3566777777777777654
No 283
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=72.93 E-value=62 Score=28.02 Aligned_cols=120 Identities=19% Similarity=0.237 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEcC-CccCccccH-HHHHHHHhccCCCCcEEE-EeCccchHhhH----HHHHHcCCCe--E
Q 022377 18 NEILRLAYLFVTSGVDKIRLTG-GEPTVRKDI-EEACFHLSKLKGLKTLAM-TTNGLTLARKL----PKLKESGLTS--V 88 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~~v~~tG-GEPll~~~~-~~ii~~~~~~~~~~~v~i-~TNG~ll~~~~----~~l~~~~~~~--v 88 (298)
+.+...++.+++.| ..|.|+. -.+-..+++ .++++.+.+. |...+.+ .|.|...++.+ ..+++ .+.. +
T Consensus 114 ~~~~~~i~~a~~~G-~~v~~~~~~~~~~~~~~~~~~~~~~~~~-G~~~i~l~DT~G~~~P~~v~~lv~~l~~-~~~~~~i 190 (268)
T cd07940 114 ERAVEAVEYAKSHG-LDVEFSAEDATRTDLDFLIEVVEAAIEA-GATTINIPDTVGYLTPEEFGELIKKLKE-NVPNIKV 190 (268)
T ss_pred HHHHHHHHHHHHcC-CeEEEeeecCCCCCHHHHHHHHHHHHHc-CCCEEEECCCCCCCCHHHHHHHHHHHHH-hCCCCce
Confidence 44556677777777 4566642 222244554 5888888774 6654554 59998886543 44444 2333 6
Q ss_pred EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec-C--CCHhHHHHHHHHHhhCC
Q 022377 89 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR-G--FNDDEICDFVELTRDRP 153 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~-~--~n~~~i~~i~~~~~~~g 153 (298)
.|++++.+ ++...+.|.-.+.++|+.. |.+++.. | .---.+++++.++..+|
T Consensus 191 ~l~~H~Hn-----------~~GlA~An~laAi~aG~~~--iD~s~~GlG~~aGN~~tE~lv~~L~~~~ 245 (268)
T cd07940 191 PISVHCHN-----------DLGLAVANSLAAVEAGARQ--VECTINGIGERAGNAALEEVVMALKTRY 245 (268)
T ss_pred eEEEEecC-----------CcchHHHHHHHHHHhCCCE--EEEEeeccccccccccHHHHHHHHHhcc
Confidence 77777743 2335566666666778833 3444442 1 11234667777776654
No 284
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=72.45 E-value=93 Score=29.82 Aligned_cols=116 Identities=13% Similarity=0.275 Sum_probs=73.4
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEc--CCccCcccc-HHHHHHHHhccC--CCCcEEEEeC---ccchHhhHHHHHHcCC
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLT--GGEPTVRKD-IEEACFHLSKLK--GLKTLAMTTN---GLTLARKLPKLKESGL 85 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~t--GGEPll~~~-~~~ii~~~~~~~--~~~~v~i~TN---G~ll~~~~~~l~~~~~ 85 (298)
.-+.+.+.++++++.+.|+..|+|. -| ++.|. +.++++.+++.. ++. +.+.|. |.-+...+. -.++|+
T Consensus 151 ~~t~e~~~~~a~~l~~~Gad~I~IkDtaG--ll~P~~~~~LV~~Lk~~~~~~ip-I~~H~Hnt~GlA~An~la-AieAGa 226 (499)
T PRK12330 151 IHTVEGFVEQAKRLLDMGADSICIKDMAA--LLKPQPAYDIVKGIKEACGEDTR-INLHCHSTTGVTLVSLMK-AIEAGV 226 (499)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcc--CCCHHHHHHHHHHHHHhCCCCCe-EEEEeCCCCCcHHHHHHH-HHHcCC
Confidence 4588999999999999999999995 33 45555 558888887753 464 776654 433333344 456799
Q ss_pred CeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHh
Q 022377 86 TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTR 150 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~ 150 (298)
+.|..|+.|.... .|..+.+.++..++ ..|+ .. +.+.+.+.++.+++.
T Consensus 227 d~vDtai~Glg~~-----aGn~atE~vv~~L~---~~g~-~t--------giDl~~L~~i~~~~~ 274 (499)
T PRK12330 227 DVVDTAISSMSLG-----PGHNPTESLVEMLE---GTGY-TT--------KLDMDRLLKIRDHFK 274 (499)
T ss_pred CEEEeeccccccc-----ccchhHHHHHHHHH---hcCC-CC--------CCCHHHHHHHHHHHH
Confidence 9999999997322 13333555555554 3466 33 345555555444443
No 285
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=72.32 E-value=38 Score=30.22 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCcc------------Cc-cccHH-HHHHHHhccCCCCcEEEEeC-cc-----chHh
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTGGEP------------TV-RKDIE-EACFHLSKLKGLKTLAMTTN-GL-----TLAR 75 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tGGEP------------ll-~~~~~-~ii~~~~~~~~~~~v~i~TN-G~-----ll~~ 75 (298)
+++++.+....+.+.|...|.+..|=| ++ ++++. ++++.+++..++. +++-.. |. ...+
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~p-v~vKir~g~~~~~~~~~~ 151 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIP-VTVKIRIGWDDAHINAVE 151 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCC-EEEEEEcccCCCcchHHH
Confidence 778999999988888988888865555 34 45655 9999988754664 655432 21 1235
Q ss_pred hHHHHHHcCCCeEEEe
Q 022377 76 KLPKLKESGLTSVNIS 91 (298)
Q Consensus 76 ~~~~l~~~~~~~v~iS 91 (298)
.+..+.+.|++.|.|+
T Consensus 152 ~a~~l~~~G~d~i~vh 167 (319)
T TIGR00737 152 AARIAEDAGAQAVTLH 167 (319)
T ss_pred HHHHHHHhCCCEEEEE
Confidence 6777888899988875
No 286
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=72.25 E-value=15 Score=33.49 Aligned_cols=143 Identities=16% Similarity=0.221 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc--C--CccCc-cccHHHHHHHHhccCCCCcEEEEeCccchHh------hHHHHHHcC
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLT--G--GEPTV-RKDIEEACFHLSKLKGLKTLAMTTNGLTLAR------KLPKLKESG 84 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~t--G--GEPll-~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~------~~~~l~~~~ 84 (298)
+.++..+.|+.+.+.|...|--+ - ++|-. ...+.++++.+++. ++. +.+..|...+.. .++.+.+.|
T Consensus 12 ~~~~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~-~~~-v~~Disp~~l~~lg~~~~dl~~~~~lG 89 (357)
T PF05913_consen 12 SFEENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKEL-GME-VIADISPKVLKKLGISYDDLSFFKELG 89 (357)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHC-T-E-EEEEE-CCHHHTTT-BTTBTHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHC-CCE-EEEECCHHHHHHcCCCHHHHHHHHHcC
Confidence 78999999999999996554433 2 32323 34577999999995 995 999999988753 378899999
Q ss_pred CCeEEEecCCCCHHhhhhhcCCC-----cHHH-HHHHHHHHHHcCCC--CEEEEEEEec----CCCHhHHHHHHHHHhhC
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRK-----GHEK-VMESINAAIEVGYN--PVKVNCVVMR----GFNDDEICDFVELTRDR 152 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~-----~~~~-v~~~i~~l~~~g~~--~v~i~~vi~~----~~n~~~i~~i~~~~~~~ 152 (298)
++.+.+. +|++.+.-..+...+ +-+. .-+-++.|.++|.. ++..-.-.-| |...+.+.+.-+++++.
T Consensus 90 i~~lRlD-~Gf~~~~ia~ls~ng~~I~LNASti~~~~l~~L~~~~~~~~~i~a~HNfYPr~~TGLs~~~f~~~n~~~k~~ 168 (357)
T PF05913_consen 90 IDGLRLD-YGFSGEEIAKLSKNGIKIELNASTITEEELDELIKYGANFSNIIACHNFYPRPYTGLSEEFFIEKNQLLKEY 168 (357)
T ss_dssp -SEEEES-SS-SCHHHHHHTTT-SEEEEETTT--CCHHHHHCCTT--GGGEEEE---B-STT-SB-HHHHHHHHHHHHHT
T ss_pred CCEEEEC-CCCCHHHHHHHHhCCCEEEEECCCCChHHHHHHHHhcCCHHHeEEEecccCCCCCCCCHHHHHHHHHHHHHC
Confidence 9999998 666665444444320 0111 23345555555441 2222112222 23346677788888888
Q ss_pred CCeeEEEeeec
Q 022377 153 PINIRFIEFMP 163 (298)
Q Consensus 153 g~~~~~~~~~p 163 (298)
|+. ...|+|
T Consensus 169 gi~--~~AFI~ 177 (357)
T PF05913_consen 169 GIK--TAAFIP 177 (357)
T ss_dssp T-E--EEEEE-
T ss_pred CCc--EEEEec
Confidence 874 334444
No 287
>PLN02334 ribulose-phosphate 3-epimerase
Probab=72.01 E-value=59 Score=27.39 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=70.6
Q ss_pred HHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcC-CCeEEE-ecCCCCHHh
Q 022377 22 RLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG-LTSVNI-SLDTLVPAK 99 (298)
Q Consensus 22 ~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~-~~~v~i-Sldg~~~~~ 99 (298)
..++.+.+.|...|+++.|. -........++.+++. ++. +.+++|.....+.++.+.+.+ +++|.+ ++...
T Consensus 79 d~~~~~~~~gad~v~vH~~q-~~~d~~~~~~~~i~~~-g~~-iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg---- 151 (229)
T PLN02334 79 DYVPDFAKAGASIFTFHIEQ-ASTIHLHRLIQQIKSA-GMK-AGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPG---- 151 (229)
T ss_pred HHHHHHHHcCCCEEEEeecc-ccchhHHHHHHHHHHC-CCe-EEEEECCCCCHHHHHHHHhccCCCEEEEEEEecC----
Confidence 34566667788899999884 0112345888888874 885 999998633445566666643 888866 33221
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 100 FEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 100 ~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
..+...-...++.++.+++... .+ .+++.-|.+.+.+.++.+ .|++
T Consensus 152 ---~~~~~~~~~~~~~i~~~~~~~~-~~--~I~a~GGI~~e~i~~l~~----aGad 197 (229)
T PLN02334 152 ---FGGQSFIPSMMDKVRALRKKYP-EL--DIEVDGGVGPSTIDKAAE----AGAN 197 (229)
T ss_pred ---CCccccCHHHHHHHHHHHHhCC-CC--cEEEeCCCCHHHHHHHHH----cCCC
Confidence 1121112456677777777532 22 345555678777766664 5664
No 288
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=71.75 E-value=38 Score=29.58 Aligned_cols=75 Identities=11% Similarity=0.088 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccC-------c-ccc-HHHHHHHHhccCCCCcEEEEeCccch----HhhHHHHHH
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTGGEPT-------V-RKD-IEEACFHLSKLKGLKTLAMTTNGLTL----ARKLPKLKE 82 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tGGEPl-------l-~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll----~~~~~~l~~ 82 (298)
+.+++.+.++.+.+.|+..|.+.-|=|. + +++ +.++++.+++..++. +.+=.++... .+.++.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~p-v~vKl~~~~~~~~~~~~a~~l~~ 187 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIP-LLVKLSPYFDLEDIVELAKAAER 187 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCC-EEEEeCCCCCHHHHHHHHHHHHH
Confidence 4566666666666666665555433332 1 233 236666665532332 3332222211 233455566
Q ss_pred cCCCeEEEe
Q 022377 83 SGLTSVNIS 91 (298)
Q Consensus 83 ~~~~~v~iS 91 (298)
+|++.|.++
T Consensus 188 ~Gad~i~~~ 196 (289)
T cd02810 188 AGADGLTAI 196 (289)
T ss_pred cCCCEEEEE
Confidence 666666654
No 289
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=71.05 E-value=80 Score=28.51 Aligned_cols=84 Identities=17% Similarity=0.241 Sum_probs=55.0
Q ss_pred CCCCCCHHHHHHHHHHHHh-------CCCCEEEEcCCc---------cCcc-------------ccHH-HHHHHHhccCC
Q 022377 11 KPQLLSLNEILRLAYLFVT-------SGVDKIRLTGGE---------PTVR-------------KDIE-EACFHLSKLKG 60 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~-------~~~~~v~~tGGE---------Pll~-------------~~~~-~ii~~~~~~~~ 60 (298)
....||.+++.++++.+.+ .|...|.+.+|- |..+ ..|. ++++.+++.-+
T Consensus 138 ~p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg 217 (338)
T cd02933 138 TPRALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIG 217 (338)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhC
Confidence 3478999999999875544 688899998777 6553 2344 88888887433
Q ss_pred CCcEEEEeCcc----------chH---hhHHHHHHcCCCeEEEecCC
Q 022377 61 LKTLAMTTNGL----------TLA---RKLPKLKESGLTSVNISLDT 94 (298)
Q Consensus 61 ~~~v~i~TNG~----------ll~---~~~~~l~~~~~~~v~iSldg 94 (298)
...+.+-.|+. ..+ +.++.|.+.|++.|.||.-.
T Consensus 218 ~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~ 264 (338)
T cd02933 218 ADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPR 264 (338)
T ss_pred CCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 31244433321 222 23566777789999998544
No 290
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=71.04 E-value=30 Score=30.81 Aligned_cols=74 Identities=19% Similarity=0.269 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCc---cCc--------cccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHH
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLTGGE---PTV--------RKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKE 82 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~tGGE---Pll--------~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~ 82 (298)
++.++...+++.+.+.|+..|.+++|- |.. .+...+.++.+++..++ -|..+|-.. .+.++++.+
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~i---PVi~~Ggi~t~~~a~~~l~ 301 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKI---PVIAVGGIRDPEVAEEILA 301 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCC---CEEEeCCCCCHHHHHHHHH
Confidence 678999999999999999999998653 222 12244677777764444 345556554 566777777
Q ss_pred c-CCCeEEEe
Q 022377 83 S-GLTSVNIS 91 (298)
Q Consensus 83 ~-~~~~v~iS 91 (298)
. +.|.|.+.
T Consensus 302 ~g~aD~V~ig 311 (327)
T cd02803 302 EGKADLVALG 311 (327)
T ss_pred CCCCCeeeec
Confidence 6 68877775
No 291
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=71.02 E-value=51 Score=28.50 Aligned_cols=98 Identities=14% Similarity=0.198 Sum_probs=63.8
Q ss_pred EEEEeCccch-H---hhHHHHHHcCCCeEEEecCCCCH---------HhhhhhcCCCcHHHHHHHHHHHHHc--CCCCEE
Q 022377 64 LAMTTNGLTL-A---RKLPKLKESGLTSVNISLDTLVP---------AKFEFLTRRKGHEKVMESINAAIEV--GYNPVK 128 (298)
Q Consensus 64 v~i~TNG~ll-~---~~~~~l~~~~~~~v~iSldg~~~---------~~~~~ir~~~~~~~v~~~i~~l~~~--g~~~v~ 128 (298)
+.-.|.|.-- + +.++.+.+.|.|.|.+.+-.-+| ..+..+.++-+.+++++.++.+++. .+ ++.
T Consensus 13 i~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~-plv 91 (256)
T TIGR00262 13 IPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNI-PIG 91 (256)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC-CEE
Confidence 6677888633 2 34677888899999988855443 2344456666789999999999865 55 544
Q ss_pred EEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeec
Q 022377 129 VNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMP 163 (298)
Q Consensus 129 i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p 163 (298)
+.+...+ .-.-.++++++.+.+.|++.-.+.-.|
T Consensus 92 ~m~Y~Np-i~~~G~e~f~~~~~~aGvdgviipDlp 125 (256)
T TIGR00262 92 LLTYYNL-IFRKGVEEFYAKCKEVGVDGVLVADLP 125 (256)
T ss_pred EEEeccH-HhhhhHHHHHHHHHHcCCCEEEECCCC
Confidence 3333322 222347888888888888654553333
No 292
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=70.89 E-value=98 Score=29.42 Aligned_cols=117 Identities=21% Similarity=0.276 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEc--CCccCcccc-HHHHHHHHhccCCCCcEEEEe---CccchHhhHHHHHHcCCCe
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLT--GGEPTVRKD-IEEACFHLSKLKGLKTLAMTT---NGLTLARKLPKLKESGLTS 87 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~t--GGEPll~~~-~~~ii~~~~~~~~~~~v~i~T---NG~ll~~~~~~l~~~~~~~ 87 (298)
.-+.+.+.++++++.+.|+..|+|. .| ++.|. +.++++.+++..++. +.+.| .|.-+...+..+ ++|++.
T Consensus 149 ~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G--~l~P~~v~~Lv~~lk~~~~vp-I~~H~Hnt~GlA~AN~laAi-eaGad~ 224 (467)
T PRK14041 149 VHTLEYYLEFARELVDMGVDSICIKDMAG--LLTPKRAYELVKALKKKFGVP-VEVHSHCTTGLASLAYLAAV-EAGADM 224 (467)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECCccC--CcCHHHHHHHHHHHHHhcCCc-eEEEecCCCCcHHHHHHHHH-HhCCCE
Confidence 4568888888888888998889884 33 35554 557888777754553 66654 454444444444 669999
Q ss_pred EEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 88 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
|..|+.+..+- .+..+.+.++..++ ..|+ .. |.+.+.+.++.+++.+
T Consensus 225 vD~sv~~~g~g-----agN~atE~lv~~L~---~~g~-~t--------giDl~~L~~~~~~~~~ 271 (467)
T PRK14041 225 FDTAISPFSMG-----TSQPPFESMYYAFR---ENGK-ET--------DFDRKALKFLVEYFTK 271 (467)
T ss_pred EEeeccccCCC-----CCChhHHHHHHHHH---hcCC-CC--------CcCHHHHHHHHHHHHH
Confidence 99999876532 12223555555544 3455 33 3455555555554443
No 293
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=69.85 E-value=65 Score=28.44 Aligned_cols=45 Identities=16% Similarity=0.093 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccC--cc--c---cHHHHHHHHhc
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPT--VR--K---DIEEACFHLSK 57 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl--l~--~---~~~~ii~~~~~ 57 (298)
...+.+++...+..+.+.|++.|.+.+|+|- -+ + +-.++++.++.
T Consensus 87 ~d~n~~~i~~~l~~~~~~Gi~~ilaLrGDpp~g~~~~~~~~~s~dLv~lik~ 138 (291)
T COG0685 87 RDRNRIEIISILKGAAALGIRNILALRGDPPAGDKPGGKDLYSVDLVELIKK 138 (291)
T ss_pred cCCCHHHHHHHHHHHHHhCCceEEEecCCCCCCCCCCccccCHHHHHHHHHH
Confidence 4468999999999999999999998888873 22 2 23477777775
No 294
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=69.78 E-value=32 Score=31.67 Aligned_cols=81 Identities=16% Similarity=0.257 Sum_probs=50.3
Q ss_pred CCCCCHHHHHHHHHHHH-------hCCCCEEEEcC---Cc-------cCc-------------cccHH-HHHHHHhccC-
Q 022377 12 PQLLSLNEILRLAYLFV-------TSGVDKIRLTG---GE-------PTV-------------RKDIE-EACFHLSKLK- 59 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~-------~~~~~~v~~tG---GE-------Pll-------------~~~~~-~ii~~~~~~~- 59 (298)
..+||.+||..+++.+. +.|...|.+.+ |= |.. +..|. ++++.+++.-
T Consensus 137 p~~mt~~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g 216 (382)
T cd02931 137 CRELTTEEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCG 216 (382)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcC
Confidence 47799999999998665 46888888865 33 112 23344 8888887743
Q ss_pred -CCCcEEEEeC---------------------ccchH---hhHHHHHHcCCCeEEEecC
Q 022377 60 -GLKTLAMTTN---------------------GLTLA---RKLPKLKESGLTSVNISLD 93 (298)
Q Consensus 60 -~~~~v~i~TN---------------------G~ll~---~~~~~l~~~~~~~v~iSld 93 (298)
++. +.+=-| |.-++ +.++.|.++|+|.|.||--
T Consensus 217 ~~f~-v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g 274 (382)
T cd02931 217 EDFP-VSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAG 274 (382)
T ss_pred CCce-EEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 332 443222 22233 2456666778888888853
No 295
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=69.24 E-value=57 Score=28.80 Aligned_cols=107 Identities=18% Similarity=0.198 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHhCCCCEEEE--c---------CCccCcc-cc-HHHHHHHHhccCCCC-cEEEEeCccchHhhHHHHH
Q 022377 16 SLNEILRLAYLFVTSGVDKIRL--T---------GGEPTVR-KD-IEEACFHLSKLKGLK-TLAMTTNGLTLARKLPKLK 81 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~--t---------GGEPll~-~~-~~~ii~~~~~~~~~~-~v~i~TNG~ll~~~~~~l~ 81 (298)
+.+++.++++.+.+.+...|.| + +|..+++ ++ +.++++.+++..++. .+.|..|-..+.+.++.+.
T Consensus 111 ~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~ 190 (299)
T cd02940 111 NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAK 190 (299)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHH
Confidence 6788888888887766655554 1 1556664 55 458888887643332 2444444333456677788
Q ss_pred HcCCCeEEEe--------cC--CCCHH--hh-----hhhcCCCcHHHHHHHHHHHHHc
Q 022377 82 ESGLTSVNIS--------LD--TLVPA--KF-----EFLTRRKGHEKVMESINAAIEV 122 (298)
Q Consensus 82 ~~~~~~v~iS--------ld--g~~~~--~~-----~~ir~~~~~~~v~~~i~~l~~~ 122 (298)
++|.+.|.++ +| +..+. .| ..+.|...+...++.+..+++.
T Consensus 191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~~~~ 248 (299)
T cd02940 191 EGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQIARA 248 (299)
T ss_pred HcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHHHHh
Confidence 8899988742 22 21110 11 1122222366778888888774
No 296
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=68.83 E-value=74 Score=27.18 Aligned_cols=117 Identities=26% Similarity=0.280 Sum_probs=74.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEc--CCccCcccc------------------HHHHHHHHhccCCCCcEEEEe--Ccc
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLT--GGEPTVRKD------------------IEEACFHLSKLKGLKTLAMTT--NGL 71 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~t--GGEPll~~~------------------~~~ii~~~~~~~~~~~v~i~T--NG~ 71 (298)
.-+.+.+.+.++.+.+.|+..+.+- =-+|.+... ..++++.+++...+. +.+-| |-.
T Consensus 10 ~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~p-v~lm~y~n~~ 88 (242)
T cd04724 10 DPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIP-IVLMGYYNPI 88 (242)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCC-EEEEEecCHH
Confidence 3467889999999999998877765 355555533 235666776533454 44422 532
Q ss_pred c---hHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHH
Q 022377 72 T---LARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVEL 148 (298)
Q Consensus 72 l---l~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~ 148 (298)
+ +++.++.+.++|.+.+.+- |-+ ++...+.++.++++|+ .. -..+.|....+.++.+.+.
T Consensus 89 ~~~G~~~fi~~~~~aG~~giiip-Dl~-------------~ee~~~~~~~~~~~g~-~~--i~~i~P~T~~~~i~~i~~~ 151 (242)
T cd04724 89 LQYGLERFLRDAKEAGVDGLIIP-DLP-------------PEEAEEFREAAKEYGL-DL--IFLVAPTTPDERIKKIAEL 151 (242)
T ss_pred HHhCHHHHHHHHHHCCCcEEEEC-CCC-------------HHHHHHHHHHHHHcCC-cE--EEEeCCCCCHHHHHHHHhh
Confidence 2 3568999999999987774 221 2456677888889988 44 3345564445666666654
No 297
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=68.82 E-value=26 Score=31.80 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=51.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCC---ccCcc-----c--cHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHH
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGG---EPTVR-----K--DIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKE 82 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGG---EPll~-----~--~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~ 82 (298)
-++.++..++++.+.+.|+..|.+++| +|.-. + .+.++.+.+++..++ -+.++|.+. .+.++++.+
T Consensus 220 g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~i---PVi~~G~i~~~~~a~~~i~ 296 (353)
T cd02930 220 GSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDI---PVIASNRINTPEVAERLLA 296 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCC---CEEEcCCCCCHHHHHHHHH
Confidence 368899999999999999999999865 34321 1 145666777764344 466777665 566777777
Q ss_pred cC-CCeEEEe
Q 022377 83 SG-LTSVNIS 91 (298)
Q Consensus 83 ~~-~~~v~iS 91 (298)
.+ .|.|++.
T Consensus 297 ~g~~D~V~~g 306 (353)
T cd02930 297 DGDADMVSMA 306 (353)
T ss_pred CCCCChhHhh
Confidence 65 7766665
No 298
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=68.44 E-value=24 Score=32.23 Aligned_cols=47 Identities=26% Similarity=0.241 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCC---ccCccccHHHHHHHHhccCCC
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLTGG---EPTVRKDIEEACFHLSKLKGL 61 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~tGG---EPll~~~~~~ii~~~~~~~~~ 61 (298)
++.++..+++..+.+.|+..|.+++| +|........+.+.+++..++
T Consensus 232 ~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~~ 281 (361)
T cd04747 232 DTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTGL 281 (361)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcCC
Confidence 67888888888888888888888876 564433233455555554344
No 299
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=68.02 E-value=96 Score=28.20 Aligned_cols=125 Identities=14% Similarity=0.157 Sum_probs=63.4
Q ss_pred CCHHHHH----HHHHHHHhCCCCE-EEEc--CCccCc---ccc-HHHHHHHHhccCCCCcEEE-EeCccchHhhH----H
Q 022377 15 LSLNEIL----RLAYLFVTSGVDK-IRLT--GGEPTV---RKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKL----P 78 (298)
Q Consensus 15 l~~e~~~----~~i~~~~~~~~~~-v~~t--GGEPll---~~~-~~~ii~~~~~~~~~~~v~i-~TNG~ll~~~~----~ 78 (298)
++.++.. ++++.+++.|... +.++ =|-|.- .++ +.++++.+.+. |...+.+ .|.|...+..+ +
T Consensus 155 ~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~-Gad~I~l~DT~G~a~P~~v~~lv~ 233 (347)
T PLN02746 155 CSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDM-GCYEISLGDTIGVGTPGTVVPMLE 233 (347)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHc-CCCEEEecCCcCCcCHHHHHHHHH
Confidence 4455544 4666666666432 2232 233332 344 44777777774 6654444 48887775443 3
Q ss_pred HHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec-C-------C-CHhHHHHHHHHH
Q 022377 79 KLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR-G-------F-NDDEICDFVELT 149 (298)
Q Consensus 79 ~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~-~-------~-n~~~i~~i~~~~ 149 (298)
.+++. +..+.|+++..+ ++-..+.|.-...++|... +.+++.. | . ----+++++..+
T Consensus 234 ~l~~~-~~~~~i~~H~Hn-----------d~GlA~AN~lAA~~aGa~~--vd~sv~GlGecPfa~graGN~atE~lv~~L 299 (347)
T PLN02746 234 AVMAV-VPVDKLAVHFHD-----------TYGQALANILVSLQMGIST--VDSSVAGLGGCPYAKGASGNVATEDVVYML 299 (347)
T ss_pred HHHHh-CCCCeEEEEECC-----------CCChHHHHHHHHHHhCCCE--EEEecccccCCCCCCCCCCChhHHHHHHHH
Confidence 33332 332345555532 2335666666777777732 3443331 1 1 112356666666
Q ss_pred hhCCC
Q 022377 150 RDRPI 154 (298)
Q Consensus 150 ~~~g~ 154 (298)
..+|+
T Consensus 300 ~~~G~ 304 (347)
T PLN02746 300 NGLGV 304 (347)
T ss_pred HhcCC
Confidence 66665
No 300
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=67.99 E-value=82 Score=27.42 Aligned_cols=117 Identities=18% Similarity=0.246 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCc-----cCccccH-HHHHHHHhccCCCCcEE-EEeCccchHhhH----HHHHHcCC
Q 022377 17 LNEILRLAYLFVTSGVDKIRLTGGE-----PTVRKDI-EEACFHLSKLKGLKTLA-MTTNGLTLARKL----PKLKESGL 85 (298)
Q Consensus 17 ~e~~~~~i~~~~~~~~~~v~~tGGE-----Pll~~~~-~~ii~~~~~~~~~~~v~-i~TNG~ll~~~~----~~l~~~~~ 85 (298)
.+.+...++.+++.|. .|.++ .| +-..+++ .++++.+.+. |...+. ..|.|...++.+ +.+++. +
T Consensus 118 ~~~~~~~i~~ak~~G~-~v~~~-~~~~~d~~~~~~~~~~~~~~~~~~~-g~~~i~l~DT~G~~~P~~v~~lv~~l~~~-~ 193 (273)
T cd07941 118 LAMIRDSVAYLKSHGR-EVIFD-AEHFFDGYKANPEYALATLKAAAEA-GADWLVLCDTNGGTLPHEIAEIVKEVRER-L 193 (273)
T ss_pred HHHHHHHHHHHHHcCC-eEEEe-EEeccccCCCCHHHHHHHHHHHHhC-CCCEEEEecCCCCCCHHHHHHHHHHHHHh-C
Confidence 3445566667777774 45553 33 1223554 4888887774 665455 359998886544 444443 3
Q ss_pred CeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec-C--CCHhHHHHHHHHHh
Q 022377 86 TSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR-G--FNDDEICDFVELTR 150 (298)
Q Consensus 86 ~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~-~--~n~~~i~~i~~~~~ 150 (298)
..+.|++++.+ ++-..+.|.-...++|... +.+++.. | .--..++.++..+.
T Consensus 194 ~~~~l~~H~Hn-----------d~Gla~An~laA~~aGa~~--id~s~~GlGeraGn~~~e~~~~~L~ 248 (273)
T cd07941 194 PGVPLGIHAHN-----------DSGLAVANSLAAVEAGATQ--VQGTINGYGERCGNANLCSIIPNLQ 248 (273)
T ss_pred CCCeeEEEecC-----------CCCcHHHHHHHHHHcCCCE--EEEeccccccccccccHHHHHHHHH
Confidence 44777877743 1234555555556678833 3444331 1 11133566666554
No 301
>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]
Probab=67.64 E-value=1.1e+02 Score=28.90 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=88.6
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccc----hHhhHHHHHHcCCC
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLT----LARKLPKLKESGLT 86 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~l----l~~~~~~l~~~~~~ 86 (298)
.+..|++++-..+.+++..+|+..|-+ |+|-...+-.+.++++.+..+.. +.|.|=..- +...++.++.+.-.
T Consensus 72 ~ga~~~~~qK~eiar~L~~~gvd~IEv--~fP~aSe~~~~~~~~i~k~~g~~-~~I~~l~rc~~~di~~tvEAl~~aKr~ 148 (560)
T KOG2367|consen 72 PGAFLTTEQKLEIARQLAKLGVDIIEV--GFPVASEQDFEDCKTIAKTLGYV-PVICTLIRCHMDDIERTVEALKYAKRP 148 (560)
T ss_pred CCCcCCcHHHHHHHHHHHhcCcCEEEe--cCcccCcchHHHHHHHHHhCCCC-ceEEEeeccchHHHHHHHHHhhccCcc
Confidence 456799999999999999998777666 67877776666666665533664 666554322 22345666554444
Q ss_pred eEEEecCCCCHHhhhhhcCCCc----HHHHHHHHHHHHHcCCCCEEEEE-EEecCCCHhHHHHHHHHHhhCCCe
Q 022377 87 SVNISLDTLVPAKFEFLTRRKG----HEKVMESINAAIEVGYNPVKVNC-VVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~----~~~v~~~i~~l~~~g~~~v~i~~-vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
.|.+=+-. .+.|+++.-+.+ .+.+++.++..+..|.-.+.... ...+ ...+.+.++++-+...|+.
T Consensus 149 ~Vh~~~aT--Sd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ieFSpEd~~r-se~~fl~eI~~aV~Kag~~ 219 (560)
T KOG2367|consen 149 RVHVFIAT--SDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIEFSPEDFGR-SELEFLLEILGAVIKAGVT 219 (560)
T ss_pred eEEEEecc--cHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEEECcccccc-CcHHHHHHHHHHHHHhCCc
Confidence 45554433 466766654444 77888899999999852444443 3333 2345577788777777764
No 302
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=67.55 E-value=43 Score=30.32 Aligned_cols=82 Identities=21% Similarity=0.376 Sum_probs=50.5
Q ss_pred CCCCCHHHHHHHHHHHHh-------CCCCEEEEcC--C-------ccCccc-------------cHH-HHHHHHhccCCC
Q 022377 12 PQLLSLNEILRLAYLFVT-------SGVDKIRLTG--G-------EPTVRK-------------DIE-EACFHLSKLKGL 61 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-------~~~~~v~~tG--G-------EPll~~-------------~~~-~ii~~~~~~~~~ 61 (298)
..+||.++|.++++++.+ .|...|.+.+ | -|..+. .+. ++++.+++.-+.
T Consensus 128 ~~~mt~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~ 207 (343)
T cd04734 128 PKAMEEEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGP 207 (343)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCC
Confidence 367999999998875544 6788888876 4 454432 343 888888874332
Q ss_pred C-cEEEEeC-------ccchHh---hHHHHHHcC-CCeEEEecC
Q 022377 62 K-TLAMTTN-------GLTLAR---KLPKLKESG-LTSVNISLD 93 (298)
Q Consensus 62 ~-~v~i~TN-------G~ll~~---~~~~l~~~~-~~~v~iSld 93 (298)
. .+.+--+ |.-.++ .++.|.++| ++.|.||.-
T Consensus 208 ~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g 251 (343)
T cd04734 208 DFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAG 251 (343)
T ss_pred CCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCC
Confidence 1 1332222 222332 356667777 898998843
No 303
>PLN02540 methylenetetrahydrofolate reductase
Probab=66.91 E-value=1.3e+02 Score=29.33 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc-----------ccHHHHHHHHhcc
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR-----------KDIEEACFHLSKL 58 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~-----------~~~~~ii~~~~~~ 58 (298)
..++.+++...+..+.+.|++.|-.-.|+|--. ..-.++|+++++.
T Consensus 68 rd~n~~~L~~~L~~a~~~GIrNILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~ 124 (565)
T PLN02540 68 TNMPVEKIDHALETIKSNGIQNILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSK 124 (565)
T ss_pred cCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHh
Confidence 467889999999999999999886665555432 1245888888874
No 304
>PRK09936 hypothetical protein; Provisional
Probab=66.90 E-value=91 Score=27.51 Aligned_cols=146 Identities=14% Similarity=0.206 Sum_probs=79.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--c--CCccCcccc--HHHHHHHHhccCCCCcEEE------------Ee
Q 022377 7 DLTPKPQLLSLNEILRLAYLFVTSGVDKIRL--T--GGEPTVRKD--IEEACFHLSKLKGLKTLAM------------TT 68 (298)
Q Consensus 7 ~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~--t--GGEPll~~~--~~~ii~~~~~~~~~~~v~i------------~T 68 (298)
+..+++..++.++|.++++.+...|++.+.+ | |++.+--.+ +.+.++.+.+ .|++ +.+ ..
T Consensus 27 Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~-~Gl~-v~vGL~~Dp~y~q~~~~ 104 (296)
T PRK09936 27 QPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQ-AGLK-LVVGLYADPEFFMHQKQ 104 (296)
T ss_pred ccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHH-cCCE-EEEcccCChHHHHHHhc
Confidence 4445666899999999999999999997776 3 455555444 6699999988 4875 543 23
Q ss_pred CccchHhhHHH-----------HHHc-C--CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHH-cCCCCEEEEEEE
Q 022377 69 NGLTLARKLPK-----------LKES-G--LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIE-VGYNPVKVNCVV 133 (298)
Q Consensus 69 NG~ll~~~~~~-----------l~~~-~--~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~-~g~~~v~i~~vi 133 (298)
||.-++..+.. +... + +...-|+..- ++-++..--....+-..++++..... .+. ++.|++-.
T Consensus 105 d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~El-Dd~~W~~~~rR~~L~~~L~~~~~~l~~~~k-Pv~ISay~ 182 (296)
T PRK09936 105 DGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAEL-DDLNWRDEARRQPLLTWLNAAQRLIDVSAK-PVHISAFF 182 (296)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeecc-chhcccCHHHHHHHHHHHHHHHHhCCCCCC-CeEEEeec
Confidence 54433222211 1111 1 2445555443 22222111111112223333322211 235 78877766
Q ss_pred ecCCCHhHHHHHHHHHhhCCCee
Q 022377 134 MRGFNDDEICDFVELTRDRPINI 156 (298)
Q Consensus 134 ~~~~n~~~i~~i~~~~~~~g~~~ 156 (298)
....+.+.+...++-+...++.+
T Consensus 183 ~g~~sP~~l~~Wl~~l~~~~l~V 205 (296)
T PRK09936 183 AGNMSPDGYRQWLEQLKATGVNV 205 (296)
T ss_pred ccCCChHHHHHHHHHHhhcCCeE
Confidence 54445566666666666666654
No 305
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=65.76 E-value=41 Score=28.27 Aligned_cols=68 Identities=21% Similarity=0.203 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCC
Q 022377 18 NEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDT 94 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg 94 (298)
+++.+.++.+.+.|+..|.++ .+....+++... .++. +...+..... ...++.+.+.|+..+.+|.+-
T Consensus 2 ~~~~~~l~~l~~~g~dgi~v~------~~g~~~~~k~~~--~~~~-i~~~~~~nv~N~~s~~~~~~~G~~~i~ls~EL 70 (233)
T PF01136_consen 2 EELEKYLDKLKELGVDGILVS------NPGLLELLKELG--PDLK-IIADYSLNVFNSESARFLKELGASRITLSPEL 70 (233)
T ss_pred hHHHHHHHHHHhCCCCEEEEc------CHHHHHHHHHhC--CCCc-EEEecCccCCCHHHHHHHHHcCCCEEEECccC
Confidence 678889999999999888776 233344444321 3564 7666666555 567899999999999999765
No 306
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=65.62 E-value=39 Score=28.25 Aligned_cols=71 Identities=17% Similarity=0.200 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCccC---ccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHc-CCCeEEEe
Q 022377 18 NEILRLAYLFVTSGVDKIRLTGGEPT---VRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKES-GLTSVNIS 91 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~~v~~tGGEPl---l~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~-~~~~v~iS 91 (298)
++...++..+.+.|+..|.++++.+- ..+...+.++.+++..+ +-+..||-.. .+.+.++... +.+.|.+.
T Consensus 138 ~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~---ipvi~~Ggi~~~~d~~~~l~~~gad~V~ig 213 (231)
T cd02801 138 EETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVS---IPVIANGDIFSLEDALRCLEQTGVDGVMIG 213 (231)
T ss_pred hHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC---CeEEEeCCCCCHHHHHHHHHhcCCCEEEEc
Confidence 46667777777777777877775321 11223355566655323 3455566544 4556566555 67777765
No 307
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=65.60 E-value=51 Score=30.36 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=51.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccCc----c------cc-HHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHH
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTV----R------KD-IEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLK 81 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll----~------~~-~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~ 81 (298)
-++.++...+++.+.+.|+..|.++||..-. . +. +.++++.+++..++. +..||.+. .+.+++..
T Consensus 248 g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~p---vi~~G~i~~~~~~~~~l 324 (382)
T cd02931 248 GRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDVP---VIMAGRMEDPELASEAI 324 (382)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCCCC---EEEeCCCCCHHHHHHHH
Confidence 4789999999999999999999999876211 1 11 246677777654553 44566554 56677777
Q ss_pred HcC-CCeEEEe
Q 022377 82 ESG-LTSVNIS 91 (298)
Q Consensus 82 ~~~-~~~v~iS 91 (298)
+.+ .|.|.+.
T Consensus 325 ~~g~~D~V~~g 335 (382)
T cd02931 325 NEGIADMISLG 335 (382)
T ss_pred HcCCCCeeeec
Confidence 755 7877775
No 308
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=65.51 E-value=96 Score=27.31 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=83.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEE-EEcCCc-cCcccc-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKI-RLTGGE-PTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v-~~tGGE-Pll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
+-.+.|.+..+++.+.+.+.+-| .++-|. ..+..+ +..+++.+.+..++. |.+...=...-+.+.+..+.|+++|.
T Consensus 24 N~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vP-V~lHLDH~~~~e~i~~Ai~~GftSVM 102 (283)
T PRK07998 24 NTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVP-VSLHLDHGKTFEDVKQAVRAGFTSVM 102 (283)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCC-EEEECcCCCCHHHHHHHHHcCCCEEE
Confidence 45678889999999888774433 233222 223333 445666555545775 77765522223556667788999888
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC---------HhHHHHHHHHHhhCCCeeEEE
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN---------DDEICDFVELTRDRPINIRFI 159 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n---------~~~i~~i~~~~~~~g~~~~~~ 159 (298)
+ ||-... + ..+.+.+.+..+.++.+|+ .|+...=...|.. ..+.++..+|+.+.|++.--+
T Consensus 103 ~--DgS~l~-~-----eeNi~~T~~vve~Ah~~gv-~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAv 172 (283)
T PRK07998 103 I--DGAALP-F-----EENIAFTKEAVDFAKSYGV-PVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAV 172 (283)
T ss_pred E--eCCCCC-H-----HHHHHHHHHHHHHHHHcCC-EEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeeh
Confidence 8 552211 1 1134566677778888898 7765542222221 346888899999999875443
No 309
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=64.96 E-value=10 Score=34.68 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=34.5
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHhC-CCCEEEEcCCc-cCccccHHHH
Q 022377 1 MPPEGVDLTPKPQLLSLNEILRLAYLFVTS-GVDKIRLTGGE-PTVRKDIEEA 51 (298)
Q Consensus 1 ~~~~~~~~~~~~~~l~~e~~~~~i~~~~~~-~~~~v~~tGGE-Pll~~~~~~i 51 (298)
||-.| .+. ....++..++.+++..+.-. .-..|.++||| |.++..++.+
T Consensus 260 ~P~~g-~~~-~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lrd~~~~~ 310 (366)
T TIGR02351 260 RPCTN-GLK-PKVIVTDRELVQIICAYRLFDPFVEISLSTRESKKFRDNVIPL 310 (366)
T ss_pred ccCCC-CCC-CCCcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHHHHHHhh
Confidence 57776 553 44789999999998876553 34589999999 6666555444
No 310
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=64.90 E-value=99 Score=27.24 Aligned_cols=163 Identities=14% Similarity=0.058 Sum_probs=94.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEE-Ec-CCccCcccc-HHHHHHHHhccCCCCcEEEEeC-ccchHhhHHHHHHcCCCeE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIR-LT-GGEPTVRKD-IEEACFHLSKLKGLKTLAMTTN-GLTLARKLPKLKESGLTSV 88 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~-~t-GGEPll~~~-~~~ii~~~~~~~~~~~v~i~TN-G~ll~~~~~~l~~~~~~~v 88 (298)
+-.+.|.+..+++.+.+.+.+.|. ++ |.-..+..+ +..++..+.+...+. |.+... |. --+.+.+-.+.|+.+|
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~VP-ValHLDH~~-~~e~i~~ai~~GftSV 101 (284)
T PRK12737 24 NIHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYNIP-LALHLDHHE-DLDDIKKKVRAGIRSV 101 (284)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCCCC-EEEECCCCC-CHHHHHHHHHcCCCeE
Confidence 456789999999999888754333 33 222333333 446666555545775 877655 32 2356777778899977
Q ss_pred EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC-----------HhHHHHHHHHHhhCCCeeE
Q 022377 89 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN-----------DDEICDFVELTRDRPINIR 157 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n-----------~~~i~~i~~~~~~~g~~~~ 157 (298)
.+.--..+-+ .+...+.+.++.++..|+ .|+...=-..|.+ +.+.++..+|+.+.|++.-
T Consensus 102 MiDgS~lp~e--------eNi~~T~~vv~~Ah~~gv-sVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~L 172 (284)
T PRK12737 102 MIDGSHLSFE--------ENIAIVKEVVEFCHRYDA-SVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSL 172 (284)
T ss_pred EecCCCCCHH--------HHHHHHHHHHHHHHHcCC-EEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEE
Confidence 7653332212 235567777888888888 7765541111222 2357889999999999754
Q ss_pred EEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 158 FIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 158 ~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
-+.+-...+. ....+.+.++ .++.|.+..
T Consensus 173 AvaiGt~HG~-y~~~p~Ld~~-~L~~I~~~~ 201 (284)
T PRK12737 173 AVAIGTAHGL-YKGEPKLDFE-RLAEIREKV 201 (284)
T ss_pred eeccCccccc-cCCCCcCCHH-HHHHHHHHh
Confidence 4433222221 1122345543 445555543
No 311
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=64.59 E-value=1e+02 Score=27.15 Aligned_cols=163 Identities=12% Similarity=0.051 Sum_probs=95.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEE-EEcCCc-cCcccc-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKI-RLTGGE-PTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v-~~tGGE-Pll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
+-.+.|.+..+++.+.+.+.+-| .++-++ .....+ +..++..+.+...+. |.+.-.=-..-+.++...+.|++.|+
T Consensus 24 n~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~vp-v~lHlDH~~~~e~i~~Al~~G~tsVm 102 (281)
T PRK06806 24 SVANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAKVP-VAVHFDHGMTFEKIKEALEIGFTSVM 102 (281)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 45788999999999988874433 233333 222223 334444444434664 77654422223567888888999999
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec---------CCCHhHHHHHHHHHhhCCCeeEEEe
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR---------GFNDDEICDFVELTRDRPINIRFIE 160 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~---------~~n~~~i~~i~~~~~~~g~~~~~~~ 160 (298)
+.-...+.+ ...+.+.+..+.++++|+ .++....-.. |......++..+++.+.|++.--+.
T Consensus 103 ~d~s~~~~~--------eni~~t~~v~~~a~~~gv-~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAva 173 (281)
T PRK06806 103 FDGSHLPLE--------ENIQKTKEIVELAKQYGA-TVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVA 173 (281)
T ss_pred EcCCCCCHH--------HHHHHHHHHHHHHHHcCC-eEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEc
Confidence 875544322 235667777788888898 7776654332 1223567888888877888754444
Q ss_pred eecCCCCCCcccCCCCHHHHHHHHHHh
Q 022377 161 FMPFDGNVWNVKKLVPYAEMLDTVVKK 187 (298)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~e~~~~i~~~ 187 (298)
+-|..+.. ...+.+..+ .++.+.+.
T Consensus 174 iG~~hg~~-~~~~~l~~~-~L~~i~~~ 198 (281)
T PRK06806 174 IGNAHGMY-NGDPNLRFD-RLQEINDV 198 (281)
T ss_pred cCCCCCCC-CCCCccCHH-HHHHHHHh
Confidence 45554433 122345543 34455543
No 312
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=64.36 E-value=1.1e+02 Score=29.15 Aligned_cols=101 Identities=19% Similarity=0.237 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhCCCCEEEEc--CCccCccccHHHHHHHHhccC-CCCcEEEEeCccchHhhHHHHHHcCCCeEEEecCC
Q 022377 18 NEILRLAYLFVTSGVDKIRLT--GGEPTVRKDIEEACFHLSKLK-GLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDT 94 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~~v~~t--GGEPll~~~~~~ii~~~~~~~-~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSldg 94 (298)
+++...+..+.+.|+..|.+- -|-| ..+.++++.+++.. ++. .|.-|+ ...+....|.++|.+.|.|++-+
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~D~a~g~~---~~~~~~i~~i~~~~~~~~--vi~g~~-~t~~~~~~l~~~G~d~i~vg~g~ 297 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVIDTAHGHQ---VKMISAIKAVRALDLGVP--IVAGNV-VSAEGVRDLLEAGANIIKVGVGP 297 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEEeCCCCCc---HHHHHHHHHHHHHCCCCe--EEEecc-CCHHHHHHHHHhCCCEEEECCcC
Confidence 355567777778888887773 3555 44668999998742 442 344444 34577888999999999999876
Q ss_pred CCHHhhhhhcC--CCcHHHHHHHHHHHHHcCC
Q 022377 95 LVPAKFEFLTR--RKGHEKVMESINAAIEVGY 124 (298)
Q Consensus 95 ~~~~~~~~ir~--~~~~~~v~~~i~~l~~~g~ 124 (298)
-.--+-+...+ .+....+++..+.++++++
T Consensus 298 Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~ 329 (475)
T TIGR01303 298 GAMCTTRMMTGVGRPQFSAVLECAAEARKLGG 329 (475)
T ss_pred CccccCccccCCCCchHHHHHHHHHHHHHcCC
Confidence 43222223333 2348888888888888877
No 313
>PLN02540 methylenetetrahydrofolate reductase
Probab=63.14 E-value=1.5e+02 Score=28.84 Aligned_cols=103 Identities=8% Similarity=0.133 Sum_probs=70.6
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCHhHHHHHHHHHhhC
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNCVVMRGFNDDEICDFVELTRDR 152 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~ 152 (298)
-+.+++|...+...|+|.-.+ |+.+.++.++....+++. |+ .+....+... .|..++.+.+.-+.++
T Consensus 18 ~~~~~rl~~~~P~FisVT~gA----------gGst~~~Tl~la~~lq~~~Gi-e~i~HLTCrd-~n~~~L~~~L~~a~~~ 85 (565)
T PLN02540 18 FERMDRMVAHGPLFCDITWGA----------GGSTADLTLDIANRMQNMICV-ETMMHLTCTN-MPVEKIDHALETIKSN 85 (565)
T ss_pred HHHHHHHhccCCCEEEeCCCC----------CCCcHHHHHHHHHHHHHhcCC-CeeEEeeecC-CCHHHHHHHHHHHHHC
Confidence 456788888888888887443 234568899999999875 99 8878877775 7999999999999999
Q ss_pred CCeeEEEeee--cC-CCCCCcc--cCCCCHHHHHHHHHHhCC
Q 022377 153 PINIRFIEFM--PF-DGNVWNV--KKLVPYAEMLDTVVKKFP 189 (298)
Q Consensus 153 g~~~~~~~~~--p~-~~~~~~~--~~~~~~~e~~~~i~~~~~ 189 (298)
|+. .+..+. |. ....|.. ..+....++++.+++.++
T Consensus 86 GIr-NILALrGDpp~~~d~~~~~~g~F~~A~dLV~~Ir~~~g 126 (565)
T PLN02540 86 GIQ-NILALRGDPPHGQDKFVQVEGGFACALDLVKHIRSKYG 126 (565)
T ss_pred CCC-EEEEECCCCCCCCCCcCCCCCCcccHHHHHHHHHHhCC
Confidence 984 122222 22 1222211 122336688888888764
No 314
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=63.00 E-value=36 Score=28.55 Aligned_cols=58 Identities=24% Similarity=0.307 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL 73 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll 73 (298)
.++.+++.+.+.+..+.|-..+.++.|+|+++.-..++++.+++. ++. +.+..+-+.+
T Consensus 54 ~~~~~~~~~~i~~~~~~g~~V~~L~~GDP~~~~~~~~l~~~~~~~-g~~-veviPGiSS~ 111 (229)
T TIGR01465 54 GMSLEEIVDIMSDAHREGKLVVRLHTGDPSIYGAIAEQMQLLEAL-GIP-YEVVPGVSSF 111 (229)
T ss_pred CCCHHHHHHHHHHHHHCCCeEEEEeCcCccccccHHHHHHHHHHC-CCC-EEEECChhHH
Confidence 356677777766555566556777899999998888899888874 885 8886555444
No 315
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=62.88 E-value=58 Score=29.33 Aligned_cols=75 Identities=17% Similarity=0.299 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCC---ccCcc----------cc-HHHHHHHHhccCCCCcEEEEeCccch-HhhHH
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGG---EPTVR----------KD-IEEACFHLSKLKGLKTLAMTTNGLTL-ARKLP 78 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGG---EPll~----------~~-~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~ 78 (298)
-++.++..++++.+.+.|+..|.+++| +|... +. +.++.+.+++..++. +.++|.+. .+.++
T Consensus 232 g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~iP---Vi~~G~i~t~~~a~ 308 (338)
T cd04733 232 GFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKTP---LMVTGGFRTRAAME 308 (338)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcCCC---EEEeCCCCCHHHHH
Confidence 368899999999999999999999887 23211 11 246777777644553 55566554 45677
Q ss_pred HHHHcC-CCeEEEe
Q 022377 79 KLKESG-LTSVNIS 91 (298)
Q Consensus 79 ~l~~~~-~~~v~iS 91 (298)
++.+.+ .|.|.+.
T Consensus 309 ~~l~~g~aD~V~lg 322 (338)
T cd04733 309 QALASGAVDGIGLA 322 (338)
T ss_pred HHHHcCCCCeeeeC
Confidence 777665 7877765
No 316
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=62.80 E-value=63 Score=27.24 Aligned_cols=99 Identities=14% Similarity=0.155 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCCEEEEcC--CccCccccHHHHHHHHhccCCCCcEEEE-eCccchHhh----HHHHHHcCCCeEEE
Q 022377 18 NEILRLAYLFVTSGVDKIRLTG--GEPTVRKDIEEACFHLSKLKGLKTLAMT-TNGLTLARK----LPKLKESGLTSVNI 90 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~~v~~tG--GEPll~~~~~~ii~~~~~~~~~~~v~i~-TNG~ll~~~----~~~l~~~~~~~v~i 90 (298)
+.+.++++.+++.| ..|.|+. .-..-...+.++++.+.+. |...+.+. |.|...++. +..+++.-.+ +.|
T Consensus 108 ~~~~~~v~~ak~~g-~~v~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~-~~l 184 (237)
T PF00682_consen 108 ERIEEAVKYAKELG-YEVAFGCEDASRTDPEELLELAEALAEA-GADIIYLADTVGIMTPEDVAELVRALREALPD-IPL 184 (237)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEETTTGGSSHHHHHHHHHHHHHH-T-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT-SEE
T ss_pred HHHHHHHHHHHhcC-CceEeCccccccccHHHHHHHHHHHHHc-CCeEEEeeCccCCcCHHHHHHHHHHHHHhccC-CeE
Confidence 34445555555555 3333331 1111112344666666653 54434443 777666433 3444443222 555
Q ss_pred ecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEE
Q 022377 91 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVN 130 (298)
Q Consensus 91 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~ 130 (298)
++++.+ ++--.+.|.-...++|...+...
T Consensus 185 ~~H~Hn-----------d~Gla~An~laA~~aGa~~id~t 213 (237)
T PF00682_consen 185 GFHAHN-----------DLGLAVANALAALEAGADRIDGT 213 (237)
T ss_dssp EEEEBB-----------TTS-HHHHHHHHHHTT-SEEEEB
T ss_pred EEEecC-----------CccchhHHHHHHHHcCCCEEEcc
Confidence 555522 11234555555555666444433
No 317
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=60.93 E-value=26 Score=33.26 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeC
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN 69 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TN 69 (298)
..+..+++.+.+-+..+.|-..+.+.||+|++.....+.++.+.+. ++. +.+...
T Consensus 62 ~~~~qe~i~~~l~~~a~~Gk~VvrL~~GDP~vfg~~~ee~~~l~~~-gi~-~eVVPG 116 (474)
T PRK07168 62 HIMRQEMINAHLLQFAKEGKIVVRLKGGDPSIFGRVGEEAETLAAA-NIP-YEIVPG 116 (474)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCCchHHhhHHHHHHHHHhC-CCC-EEEECC
Confidence 3466777766555555567567778999999998888888888874 774 776543
No 318
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=60.64 E-value=55 Score=24.56 Aligned_cols=55 Identities=7% Similarity=0.008 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHhCC-CCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeC
Q 022377 14 LLSLNEILRLAYLFVTSG-VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN 69 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~-~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TN 69 (298)
.++.+++.+.++++.+.. -..|.+.+=.=.-+..+..+++.+++. |+..+++.||
T Consensus 66 ~v~~~~L~~~l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~a-G~~~v~l~t~ 121 (122)
T TIGR02803 66 PVARETLGTALDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQA-GYLKIGLVGL 121 (122)
T ss_pred cCCHHHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHc-CCCEEEEEec
Confidence 345555555554443321 123333332223333445555555553 5544555554
No 319
>KOG4355 consensus Predicted Fe-S oxidoreductase [General function prediction only]
Probab=60.61 E-value=1.4e+02 Score=27.54 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=90.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc-----cCccccHH----HHHHHHhccCCCCcEEEEeCccchHhhHHHHHH-
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE-----PTVRKDIE----EACFHLSKLKGLKTLAMTTNGLTLARKLPKLKE- 82 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE-----Pll~~~~~----~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~- 82 (298)
...+.+++...+.+.-+.|+..|-++--+ -.+-..+. .+++.+-+...+ ++.+ ||--.+-+.++..+.
T Consensus 214 ~sy~~dslvervrt~f~egv~eIwltsedTgaygrdig~slp~ll~klv~~iPe~cml-r~gm-TnpP~ilehl~e~a~v 291 (547)
T KOG4355|consen 214 ASYPKDSLVERVRTSFEEGVCEIWLTSEDTGAYGRDIGKSLPKLLWKLVEVIPESCML-RAGM-TNPPYILEHLEEAAFV 291 (547)
T ss_pred ccCCHHHHHHHHHHHHhcCcEEEEecccccchhhhhhhhhhHHHHHHHHHhcchhhhh-hhcC-CCCchHHHHHHHHHHH
Confidence 35678888888888888898888886311 22222333 444444443344 3666 676555333222221
Q ss_pred -cCC---CeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHcCCCCEEEE-EEEecCCCHhHHHHHHHHHhhCCC
Q 022377 83 -SGL---TSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEVGYNPVKVN-CVVMRGFNDDEICDFVELTRDRPI 154 (298)
Q Consensus 83 -~~~---~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~g~~~v~i~-~vi~~~~n~~~i~~i~~~~~~~g~ 154 (298)
... ..+.+.+.+.....--.+.+. ..|..+.+.+....- |+ .+... ++-.|+++++++++.++++.+..+
T Consensus 292 lrhp~vYsflhvpvqsgsdsvl~emkreyc~~dfk~Vvd~LterVP-gi-~IATDiIcgFPtETdeDFeeTmeLv~kYKF 369 (547)
T KOG4355|consen 292 LRHPRVYSFLHVPVQSGSDSVLTEMKREYCNFDFKIVVDFLTERVP-GI-TIATDIICGFPTETDEDFEETMELVRKYKF 369 (547)
T ss_pred hcCCeEEEEEecccccCchhHHHHHHHHHhhhhHHHHHHHHHhhCC-Cc-EEeeeeeecCCCCchHHHHHHHHHHHHccC
Confidence 112 235566666555544444432 236666655443221 44 33222 245578899999999999999776
Q ss_pred e-eEEEeeecCCCCCCcccCCCCH
Q 022377 155 N-IRFIEFMPFDGNVWNVKKLVPY 177 (298)
Q Consensus 155 ~-~~~~~~~p~~~~~~~~~~~~~~ 177 (298)
+ +.+++|.|-.+++..+...++.
T Consensus 370 PslfInQfyPRpGTPAAkmkki~a 393 (547)
T KOG4355|consen 370 PSLFINQFYPRPGTPAAKMKKIPA 393 (547)
T ss_pred chhhhhhcCCCCCChHHhhhcccH
Confidence 4 4556788877665444333443
No 320
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=60.53 E-value=1e+02 Score=25.92 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=80.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchH--h-hHHHHHHcCCCeEE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA--R-KLPKLKESGLTSVN 89 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~--~-~~~~l~~~~~~~v~ 89 (298)
..++.++...+++++.+. ...+==|-||+...=.+.++.+++...-+.+.. ..-.++ . ..+...++|-+++.
T Consensus 11 D~~~l~~Ai~~a~~v~~~---~diiEvGTpLik~eG~~aV~~lr~~~pd~~IvA--D~Kt~D~G~~e~~ma~~aGAd~~t 85 (217)
T COG0269 11 DLLDLEEAIEIAEEVADY---VDIIEVGTPLIKAEGMRAVRALRELFPDKIIVA--DLKTADAGAIEARMAFEAGADWVT 85 (217)
T ss_pred cccCHHHHHHHHHHhhhc---ceEEEeCcHHHHHhhHHHHHHHHHHCCCCeEEe--eeeecchhHHHHHHHHHcCCCEEE
Confidence 356777777777766543 334447999998876688888887533221222 222222 2 46777889999999
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeE
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIR 157 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~ 157 (298)
||=-+ ..+.+.++++..+++|. .+-+.++ |..++++-.+++.++|++..
T Consensus 86 V~g~A-------------~~~TI~~~i~~A~~~~~-~v~iDl~-----~~~~~~~~~~~l~~~gvd~~ 134 (217)
T COG0269 86 VLGAA-------------DDATIKKAIKVAKEYGK-EVQIDLI-----GVWDPEQRAKWLKELGVDQV 134 (217)
T ss_pred EEecC-------------CHHHHHHHHHHHHHcCC-eEEEEee-----cCCCHHHHHHHHHHhCCCEE
Confidence 98433 24678889999999998 6655553 44566667777777888643
No 321
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=60.44 E-value=1.8e+02 Score=28.66 Aligned_cols=116 Identities=19% Similarity=0.300 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEc--CCccCcccc-HHHHHHHHhccCCCCcEEEE---eCccchHhhHHHHHHcCCCeE
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLT--GGEPTVRKD-IEEACFHLSKLKGLKTLAMT---TNGLTLARKLPKLKESGLTSV 88 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~t--GGEPll~~~-~~~ii~~~~~~~~~~~v~i~---TNG~ll~~~~~~l~~~~~~~v 88 (298)
-+.+.+.++++++.+.|+..|+|. -| ++.|. +.++++.+++..++. +.+. |.|.-+...+..+ ++|.+.|
T Consensus 151 ~t~~~~~~~a~~l~~~Gad~I~i~Dt~G--~~~P~~~~~lv~~lk~~~~~p-i~~H~Hnt~Gla~An~laAv-~aGad~v 226 (592)
T PRK09282 151 HTIEKYVELAKELEEMGCDSICIKDMAG--LLTPYAAYELVKALKEEVDLP-VQLHSHCTSGLAPMTYLKAV-EAGVDII 226 (592)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcCC--CcCHHHHHHHHHHHHHhCCCe-EEEEEcCCCCcHHHHHHHHH-HhCCCEE
Confidence 578888889999888998888885 23 24554 558888877754553 6654 3444344444444 6699999
Q ss_pred EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 89 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
..|+.+..+. .+..+.+.++.+++ ..|. .. +.+.+.+.++.+++.+
T Consensus 227 D~ai~g~g~~-----agn~~~e~vv~~L~---~~g~-~~--------~idl~~l~~~s~~~~~ 272 (592)
T PRK09282 227 DTAISPLAFG-----TSQPPTESMVAALK---GTPY-DT--------GLDLELLFEIAEYFRE 272 (592)
T ss_pred EeeccccCCC-----cCCHhHHHHHHHHH---hCCC-CC--------ccCHHHHHHHHHHHHH
Confidence 9999986532 23233555555554 3455 32 2455555555544443
No 322
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=59.95 E-value=1.6e+02 Score=28.00 Aligned_cols=77 Identities=23% Similarity=0.360 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc--CCccCcccc-HHHHHHHHhccCCCCcEEEEeC---ccchHhhHHHHHHcCCCeEE
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLT--GGEPTVRKD-IEEACFHLSKLKGLKTLAMTTN---GLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~t--GGEPll~~~-~~~ii~~~~~~~~~~~v~i~TN---G~ll~~~~~~l~~~~~~~v~ 89 (298)
+.+-+.++++++.+.|+..|+|. .| ++.|. +.++++.+++..++. +.+.+. |.-+...+.. .++|++.|.
T Consensus 161 t~~y~~~~a~~l~~~Gad~I~IkDtaG--~l~P~~v~~Lv~alk~~~~~p-i~~H~Hnt~GlA~An~laA-ieAGad~vD 236 (468)
T PRK12581 161 TLNYYLSLVKELVEMGADSICIKDMAG--ILTPKAAKELVSGIKAMTNLP-LIVHTHATSGISQMTYLAA-VEAGADRID 236 (468)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCCC--CcCHHHHHHHHHHHHhccCCe-EEEEeCCCCccHHHHHHHH-HHcCCCEEE
Confidence 66777778888888888888884 33 45554 447777776644553 665533 3333333444 466888888
Q ss_pred EecCCCC
Q 022377 90 ISLDTLV 96 (298)
Q Consensus 90 iSldg~~ 96 (298)
.|+.+..
T Consensus 237 ~ai~g~g 243 (468)
T PRK12581 237 TALSPFS 243 (468)
T ss_pred eeccccC
Confidence 8888764
No 323
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=59.93 E-value=24 Score=31.60 Aligned_cols=33 Identities=6% Similarity=0.022 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEE--cCCccC
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRL--TGGEPT 43 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~--tGGEPl 43 (298)
.+..++.+.++++|+.+..++...+.+ +-|.|+
T Consensus 10 aR~~~~~~~ik~~id~ma~~K~N~lhlHltD~~~~ 44 (326)
T cd06564 10 GRKYYSMDFLKDIIKTMSWYKMNDLQLHLNDNLIF 44 (326)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCceEEEeecCCccc
Confidence 467789999999999999988765554 444443
No 324
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=59.90 E-value=1.4e+02 Score=27.17 Aligned_cols=82 Identities=22% Similarity=0.369 Sum_probs=52.9
Q ss_pred CCCCCHHHHHHHHHHHHh-------CCCCEEEEcCCc---------cCccc-------------cHH-HHHHHHhccCC-
Q 022377 12 PQLLSLNEILRLAYLFVT-------SGVDKIRLTGGE---------PTVRK-------------DIE-EACFHLSKLKG- 60 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-------~~~~~v~~tGGE---------Pll~~-------------~~~-~ii~~~~~~~~- 60 (298)
...||.+|+.++++++.+ .|...|.+.+|- |..+. .|. ++++.+++.-+
T Consensus 131 p~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~ 210 (353)
T cd04735 131 PRELTHEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDK 210 (353)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhcc
Confidence 468999999999875544 577888887542 54432 344 88888877433
Q ss_pred -----CCcEEEEeC-------ccchHh---hHHHHHHcCCCeEEEecCC
Q 022377 61 -----LKTLAMTTN-------GLTLAR---KLPKLKESGLTSVNISLDT 94 (298)
Q Consensus 61 -----~~~v~i~TN-------G~ll~~---~~~~l~~~~~~~v~iSldg 94 (298)
+. +.+--| |.-.++ .+..|.+.|++.|.||.-+
T Consensus 211 ~~~~~~~-v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~ 258 (353)
T cd04735 211 HADKDFI-LGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWD 258 (353)
T ss_pred ccCCCce-EEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCc
Confidence 32 444333 323332 3567777889999998644
No 325
>PRK12999 pyruvate carboxylase; Reviewed
Probab=59.69 E-value=2.2e+02 Score=30.50 Aligned_cols=117 Identities=18% Similarity=0.259 Sum_probs=75.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEc--CCccCcccc-HHHHHHHHhccCCCCcEEEEeC---ccchHhhHHHHHHcCCC
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLT--GGEPTVRKD-IEEACFHLSKLKGLKTLAMTTN---GLTLARKLPKLKESGLT 86 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~t--GGEPll~~~-~~~ii~~~~~~~~~~~v~i~TN---G~ll~~~~~~l~~~~~~ 86 (298)
...+.+-+.++++++.+.|+..|+|. .| ++.|. ..++++.+++..++. +.+.|. |.-+...+.. .++|.+
T Consensus 686 ~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G--~l~P~~~~~lv~~lk~~~~ip-i~~H~Hnt~Gla~an~laA-~~aGad 761 (1146)
T PRK12999 686 AKYDLDYYVDLAKELEKAGAHILAIKDMAG--LLKPAAAYELVSALKEEVDLP-IHLHTHDTSGNGLATYLAA-AEAGVD 761 (1146)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECCccC--CCCHHHHHHHHHHHHHHcCCe-EEEEeCCCCchHHHHHHHH-HHhCCC
Confidence 34788899999999999999999995 34 46665 558888887755664 666644 4333344444 467999
Q ss_pred eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHh
Q 022377 87 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTR 150 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~ 150 (298)
.|..++.|... ..+..+.+.++..++ ..|. .. +.+.+.+.++.+++.
T Consensus 762 ~vD~av~glg~-----~tgn~~le~vv~~L~---~~~~-~t--------~idl~~l~~~s~~~~ 808 (1146)
T PRK12999 762 IVDVAVASMSG-----LTSQPSLNSIVAALE---GTER-DT--------GLDLDAIRKLSPYWE 808 (1146)
T ss_pred EEEecchhhcC-----CcCCHHHHHHHHHHH---hcCC-CC--------CcCHHHHHHHHHHHH
Confidence 99999999753 233334666666655 3455 32 345555555555444
No 326
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=59.64 E-value=57 Score=29.37 Aligned_cols=87 Identities=17% Similarity=0.214 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCcc----Ccccc-HHHHHHHHhccCCCCcEEEEeCccchHh---
Q 022377 4 EGVDLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEP----TVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLAR--- 75 (298)
Q Consensus 4 ~~~~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEP----ll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~--- 75 (298)
-|++.=+ +.-..++-.+.|+.+.++|...|-=+-+.| .+..+ +.++++++++. |+. +-+.-|++.+.+
T Consensus 4 ~GfSifp--~~~~~~~~~~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~~~~ell~~Ankl-g~~-vivDvnPsil~~l~~ 79 (360)
T COG3589 4 LGFSIFP--NRSPKEKDIAYIDRMHKYGFKRIFTSLLIPEEDAELYFHRFKELLKEANKL-GLR-VIVDVNPSILKELNI 79 (360)
T ss_pred eeEEecc--CCCcchhHHHHHHHHHHcCccceeeecccCCchHHHHHHHHHHHHHHHHhc-CcE-EEEEcCHHHHhhcCC
Confidence 3444444 222345556789999999966554332333 23334 66999999995 995 999999997754
Q ss_pred ---hHHHHHHcCCCeEEEecCC
Q 022377 76 ---KLPKLKESGLTSVNISLDT 94 (298)
Q Consensus 76 ---~~~~l~~~~~~~v~iSldg 94 (298)
.++.+.+.|++.+.+..--
T Consensus 80 S~~~l~~f~e~G~~glRlD~gf 101 (360)
T COG3589 80 SLDNLSRFQELGVDGLRLDYGF 101 (360)
T ss_pred ChHHHHHHHHhhhhheeecccC
Confidence 4778888888888777443
No 327
>PRK12677 xylose isomerase; Provisional
Probab=59.59 E-value=1.5e+02 Score=27.42 Aligned_cols=92 Identities=23% Similarity=0.208 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCc--cCcccc------HHHHHHHHhccCCCCcEE-EEeCccchHhhHHHHHH
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGE--PTVRKD------IEEACFHLSKLKGLKTLA-MTTNGLTLARKLPKLKE 82 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGE--Pll~~~------~~~ii~~~~~~~~~~~v~-i~TNG~ll~~~~~~l~~ 82 (298)
+..++.++. ++.+.+.|...|.|...+ |+-.+. +.++-+.+.+ .|+. +. +++|-..-+. ++
T Consensus 28 ~~~~~~~E~---v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~-~GL~-v~~v~~n~f~~p~----~~- 97 (384)
T PRK12677 28 RPPLDPVEA---VHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDE-TGLV-VPMVTTNLFTHPV----FK- 97 (384)
T ss_pred CCCCCHHHH---HHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHH-cCCe-eEEEecCCCCCcc----cc-
Confidence 445666665 555567788888887653 333331 3355555555 4875 55 5555321100 00
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCC
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGY 124 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~ 124 (298)
+ -++-+++++. | ....+.+.++|+.+.+.|.
T Consensus 98 ---~---g~lts~d~~~----R-~~Ai~~~~r~IdlA~eLGa 128 (384)
T PRK12677 98 ---D---GAFTSNDRDV----R-RYALRKVLRNIDLAAELGA 128 (384)
T ss_pred ---C---CcCCCCCHHH----H-HHHHHHHHHHHHHHHHhCC
Confidence 0 0333333332 1 1235677788888888877
No 328
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=59.58 E-value=84 Score=27.09 Aligned_cols=78 Identities=15% Similarity=0.088 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccCccc-----------cHHHHHHHHhccCCCCcEEEEeCcc-ch--HhhHHHHHH
Q 022377 17 LNEILRLAYLFVTSGVDKIRLTGGEPTVRK-----------DIEEACFHLSKLKGLKTLAMTTNGL-TL--ARKLPKLKE 82 (298)
Q Consensus 17 ~e~~~~~i~~~~~~~~~~v~~tGGEPll~~-----------~~~~ii~~~~~~~~~~~v~i~TNG~-ll--~~~~~~l~~ 82 (298)
.+.+.++|+.+..+|+..|.+.|+.....+ .+.++++++.+ .|+. +.+.+-+. .+ .+....+.+
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~gv~-l~lE~~~~~~~~~~~~~~~l~~ 170 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAA-AQVM-LAVEIMDTPFMNSISKWKKWDK 170 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHH-hCCE-EEEEecCccccCCHHHHHHHHH
Confidence 466788899999999999998765322211 24566777777 4995 98887432 22 233334443
Q ss_pred -cCCCeEEEecCCCC
Q 022377 83 -SGLTSVNISLDTLV 96 (298)
Q Consensus 83 -~~~~~v~iSldg~~ 96 (298)
.+-..+.+-+|..+
T Consensus 171 ~v~~~~~~~~~D~~h 185 (284)
T PRK13210 171 EIDSPWLTVYPDVGN 185 (284)
T ss_pred HcCCCceeEEecCCh
Confidence 34566888888753
No 329
>PRK07329 hypothetical protein; Provisional
Probab=59.47 E-value=81 Score=26.94 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=45.0
Q ss_pred HHHHHHHHhccCCCCcEEEEeCccch-------HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHH
Q 022377 48 IEEACFHLSKLKGLKTLAMTTNGLTL-------ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120 (298)
Q Consensus 48 ~~~ii~~~~~~~~~~~v~i~TNG~ll-------~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~ 120 (298)
+.++++.+++. ++. +.|+|+|... ...++..++.|+..|.++-|+-.++.-. ..| -++++.++
T Consensus 167 ~~~i~~~~~~~-~~~-lEiNt~~~~~~~~~~~~~~~l~~~~~~g~~~i~~gSDAH~~~~vg-----~~~---~~a~~~l~ 236 (246)
T PRK07329 167 LTRIFAKMIDN-DLA-FELNTKSMYLYGNEGLYRYAIELYKQLGGKLFSIGSDAHKLEHYR-----YNF---DDAQKLLK 236 (246)
T ss_pred HHHHHHHHHHc-CCe-EEEECcccccCCCCcchHHHHHHHHHcCCeEEEecCCCCCHHHHH-----HHH---HHHHHHHH
Confidence 44788888884 885 8899987531 2246777777776688888887766321 123 34566777
Q ss_pred HcCC
Q 022377 121 EVGY 124 (298)
Q Consensus 121 ~~g~ 124 (298)
+.|+
T Consensus 237 ~~g~ 240 (246)
T PRK07329 237 EHGI 240 (246)
T ss_pred HcCC
Confidence 8887
No 330
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=59.45 E-value=84 Score=27.08 Aligned_cols=119 Identities=15% Similarity=0.186 Sum_probs=69.8
Q ss_pred CccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCC----H------H----hhhhhcCCC
Q 022377 43 TVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLV----P------A----KFEFLTRRK 107 (298)
Q Consensus 43 ll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~----~------~----~~~~ir~~~ 107 (298)
++.+++.++++.+.+ .++.-+++++-+.-+ .-.++.|++.|++.-.-|+.--. + . .++-+--.+
T Consensus 81 lie~~~~~~i~~lq~-~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~ 159 (252)
T PF11019_consen 81 LIESDVPNIINSLQN-KGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTG 159 (252)
T ss_pred EcchhHHHHHHHHHH-CCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeC
Confidence 456788999999887 487655666556444 34688888877774333311100 0 0 000010012
Q ss_pred cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEeeecCC
Q 022377 108 GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIEFMPFD 165 (298)
Q Consensus 108 ~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~~~p~~ 165 (298)
+.++-.--...|...|. .+. .+++.. -+.+.+..+-+.|++.|+.+.-+.|.+..
T Consensus 160 ~~~KG~~L~~fL~~~~~-~pk-~IIfID-D~~~nl~sv~~a~k~~~I~f~G~~Yt~~~ 214 (252)
T PF11019_consen 160 GQDKGEVLKYFLDKINQ-SPK-KIIFID-DNKENLKSVEKACKKSGIDFIGFHYTGAE 214 (252)
T ss_pred CCccHHHHHHHHHHcCC-CCC-eEEEEe-CCHHHHHHHHHHHhhCCCcEEEEEEcchh
Confidence 34444333344444565 333 334444 58889999999999999987777777754
No 331
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=59.37 E-value=74 Score=27.54 Aligned_cols=78 Identities=15% Similarity=0.066 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccCcc-----------ccHHHHHHHHhccCCCCcEEEEeCc-cch---HhhHHHHH
Q 022377 17 LNEILRLAYLFVTSGVDKIRLTGGEPTVR-----------KDIEEACFHLSKLKGLKTLAMTTNG-LTL---ARKLPKLK 81 (298)
Q Consensus 17 ~e~~~~~i~~~~~~~~~~v~~tGGEPll~-----------~~~~~ii~~~~~~~~~~~v~i~TNG-~ll---~~~~~~l~ 81 (298)
.+.+.+.++.+..+|++.|.+.|+++.-. ..+.++++++++ .|+. +.+.+.. ..+ .+.++.+.
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~-~Gv~-l~lE~~~~~~~~t~~~~~~li~ 170 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRRFREGLKEAVELAAR-AQVT-LAVEIMDTPFMSSISKWLKWDH 170 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHHHHHHHHHHHHHHHH-cCCE-EEEeeCCCchhcCHHHHHHHHH
Confidence 34567888888889999998887653211 124466667776 4995 9998632 222 22333333
Q ss_pred HcCCCeEEEecCCCC
Q 022377 82 ESGLTSVNISLDTLV 96 (298)
Q Consensus 82 ~~~~~~v~iSldg~~ 96 (298)
..+-..+.+-+|..+
T Consensus 171 ~v~~~~v~~~~D~~h 185 (279)
T TIGR00542 171 YLNSPWFTLYPDIGN 185 (279)
T ss_pred HcCCCceEEEeCcCh
Confidence 445567888888764
No 332
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=59.23 E-value=1.2e+02 Score=26.36 Aligned_cols=107 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred hHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHH-HcCCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 73 LARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI-EVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 73 l~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~-~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
+-+.++.|.+.+++.|+|. |++ ++......++..+.++ +.|+ ++....+... .|..++.+.+.-+..
T Consensus 17 l~~~~~~l~~~~pd~isvT-~~~---------~~~~~~~t~~~a~~l~~~~g~-~~i~Hlt~r~-~n~~~l~~~L~~~~~ 84 (272)
T TIGR00676 17 LWETVDRLSPLDPDFVSVT-YGA---------GGSTRDRTVRIVRRIKKETGI-PTVPHLTCIG-ATREEIREILREYRE 84 (272)
T ss_pred HHHHHHHHhcCCCCEEEec-cCC---------CCCcHHHHHHHHHHHHHhcCC-CeeEEeeecC-CCHHHHHHHHHHHHH
Q ss_pred CCC-eeEEEeeecCCCCC-CcccCCCCHHHHHHHHHHhCCCc
Q 022377 152 RPI-NIRFIEFMPFDGNV-WNVKKLVPYAEMLDTVVKKFPGL 191 (298)
Q Consensus 152 ~g~-~~~~~~~~p~~~~~-~~~~~~~~~~e~~~~i~~~~~~~ 191 (298)
.|+ .+-.+.=-|..... -....+....++++.+.+.++.+
T Consensus 85 ~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f 126 (272)
T TIGR00676 85 LGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDF 126 (272)
T ss_pred CCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCe
No 333
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=58.85 E-value=1.2e+02 Score=26.26 Aligned_cols=122 Identities=13% Similarity=0.126 Sum_probs=66.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcc-----------ccHHHHHHHHhcc--CCCCcEEEEeCc------cch
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVR-----------KDIEEACFHLSKL--KGLKTLAMTTNG------LTL 73 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~-----------~~~~~ii~~~~~~--~~~~~v~i~TNG------~ll 73 (298)
...+..++...+..+...|++.|.+.+|+|--. .+-.++++.+++. .++. +.+.+.. ...
T Consensus 68 r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~~~~~~~~~~~~~~a~~Li~~i~~~~~~~~~-igva~yPe~hp~~~~~ 146 (274)
T cd00537 68 RDRNRIELQSILLGAHALGIRNILALRGDPPKGGDQPGAKPVGFVYAVDLVELIRKENGGGFS-IGVAAYPEGHPEAPSL 146 (274)
T ss_pred CCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCCCc-cccccCCCcCCCCCCH
Confidence 345678899999999999999888776665432 1245777777653 1232 3332221 112
Q ss_pred HhhHHHH---HHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH
Q 022377 74 ARKLPKL---KESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 74 ~~~~~~l---~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
...+++| .++|.+.+ |+=-.++. +...+.++.+++.|+ .+-|-.-+++=.+...+..+..++
T Consensus 147 ~~~~~~L~~Ki~aGA~f~-iTQ~~fd~------------~~~~~~~~~~~~~gi-~vPIi~GI~p~~s~~~l~~~~~~~ 211 (274)
T cd00537 147 EEDIKRLKRKVDAGADFI-ITQLFFDN------------DAFLRFVDRCRAAGI-TVPIIPGIMPLTSYKQAKRFAKLC 211 (274)
T ss_pred HHHHHHHHHHHHCCCCEE-eecccccH------------HHHHHHHHHHHHcCC-CCCEEeeccccCCHHHHHHHHHhh
Confidence 2223333 23455532 33222222 355566666777776 444454444423556665555544
No 334
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=58.82 E-value=53 Score=26.55 Aligned_cols=96 Identities=18% Similarity=0.169 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCC--c---cCccc--------cHHHHHHHHhccCCCCcEEEEeCccch-------Hhh
Q 022377 17 LNEILRLAYLFVTSGVDKIRLTGG--E---PTVRK--------DIEEACFHLSKLKGLKTLAMTTNGLTL-------ARK 76 (298)
Q Consensus 17 ~e~~~~~i~~~~~~~~~~v~~tGG--E---Pll~~--------~~~~ii~~~~~~~~~~~v~i~TNG~ll-------~~~ 76 (298)
.+.+.+.++.+..+|++.+.+..| + +.... .+.++++++.+. |+. +.+.+.+... ++.
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~-gv~-i~lE~~~~~~~~~~~~~~~~ 147 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEY-GVR-IALENHPGPFSETPFSVEEI 147 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHH-TSE-EEEE-SSSSSSSEESSHHHH
T ss_pred HHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhh-cce-EEEecccCccccchhhHHHH
Confidence 678888999999999999998866 2 12111 144666666664 884 8888776543 334
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV 122 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~ 122 (298)
.+.+.+.+-..+.+.+|...- ...+ ....+.++.+.+.
T Consensus 148 ~~~l~~~~~~~~~i~~D~~h~----~~~~----~~~~~~i~~~~~~ 185 (213)
T PF01261_consen 148 YRLLEEVDSPNVGICFDTGHL----IMAG----EDPDEAIKRLAPR 185 (213)
T ss_dssp HHHHHHHTTTTEEEEEEHHHH----HHTT----HHHHHHHHHHHHG
T ss_pred HHHHhhcCCCcceEEEehHHH----HHcC----CCHHHHHHHhhcc
Confidence 555555566669999987421 1112 3445566666665
No 335
>PRK07328 histidinol-phosphatase; Provisional
Probab=58.32 E-value=57 Score=28.28 Aligned_cols=67 Identities=30% Similarity=0.384 Sum_probs=45.9
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCccch--------HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHH
Q 022377 47 DIEEACFHLSKLKGLKTLAMTTNGLTL--------ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINA 118 (298)
Q Consensus 47 ~~~~ii~~~~~~~~~~~v~i~TNG~ll--------~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~ 118 (298)
.+.++++.+.+. |+. +.|+|+|..- .+.++..++.|+. +.|+=|+-.++.. +..|+. +++.
T Consensus 178 ~~~~il~~~~~~-g~~-lEiNt~~~r~~~~~~yp~~~il~~~~~~g~~-itigSDAH~~~~v-----g~~~~~---a~~~ 246 (269)
T PRK07328 178 LYEEALDVIAAA-GLA-LEVNTAGLRKPVGEIYPSPALLRACRERGIP-VVLGSDAHRPEEV-----GFGFAE---ALAL 246 (269)
T ss_pred HHHHHHHHHHHc-CCE-EEEEchhhcCCCCCCCCCHHHHHHHHHcCCC-EEEeCCCCCHHHH-----hccHHH---HHHH
Confidence 346888888884 885 8899876431 2456788888887 8888888776643 113444 5667
Q ss_pred HHHcCC
Q 022377 119 AIEVGY 124 (298)
Q Consensus 119 l~~~g~ 124 (298)
+++.|+
T Consensus 247 l~~~G~ 252 (269)
T PRK07328 247 LKEVGY 252 (269)
T ss_pred HHHcCC
Confidence 778888
No 336
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=57.79 E-value=75 Score=28.73 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHHhCC-CCEEEEcCCcc------------Ccccc--HHHHHHHHhccCCCCcEEEEeCccch-HhhHH
Q 022377 15 LSLNEILRLAYLFVTSG-VDKIRLTGGEP------------TVRKD--IEEACFHLSKLKGLKTLAMTTNGLTL-ARKLP 78 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~-~~~v~~tGGEP------------ll~~~--~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~ 78 (298)
++.++...+++.+.+.| +..|.+++|-- ...+. ..++++.+++..++ -+..||-+. .+.++
T Consensus 225 ~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~i---pvi~~G~i~~~~~~~ 301 (343)
T cd04734 225 LSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDL---PVFHAGRIRDPAEAE 301 (343)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcCC---CEEeeCCCCCHHHHH
Confidence 67889999999999998 78999987531 11122 35777777764344 355677554 56677
Q ss_pred HHHHcC-CCeEEEe
Q 022377 79 KLKESG-LTSVNIS 91 (298)
Q Consensus 79 ~l~~~~-~~~v~iS 91 (298)
++.+.+ .|.|.+.
T Consensus 302 ~~l~~~~~D~V~~g 315 (343)
T cd04734 302 QALAAGHADMVGMT 315 (343)
T ss_pred HHHHcCCCCeeeec
Confidence 776654 7777765
No 337
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=57.36 E-value=1.4e+02 Score=26.38 Aligned_cols=164 Identities=13% Similarity=0.064 Sum_probs=94.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEE-EcCCc-cCcccc-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIR-LTGGE-PTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~-~tGGE-Pll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
+-.+.|.+..+++.+.+.+.+-|. ++-|. .....+ +..++..+.+...+. |.+.-.=-.--+.+.+..++|+.+|.
T Consensus 24 N~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~VP-V~lHLDHg~~~e~i~~Ai~~GftSVM 102 (284)
T PRK09195 24 NIHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYHHP-LALHLDHHEKFDDIAQKVRSGVRSVM 102 (284)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 456889999999999888754332 33222 333333 446666555545775 77754421223567788888999888
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC-----------HhHHHHHHHHHhhCCCeeEE
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN-----------DDEICDFVELTRDRPINIRF 158 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n-----------~~~i~~i~~~~~~~g~~~~~ 158 (298)
+.--..+-+ .+...+.+.++.++..|+ .|+...=...|.+ +.+.++..+|+.+.|++.--
T Consensus 103 ~DgS~l~~e--------eNi~~T~~vv~~Ah~~gv-~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LA 173 (284)
T PRK09195 103 IDGSHLPFA--------QNISLVKEVVDFCHRFDV-SVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLA 173 (284)
T ss_pred eCCCCCCHH--------HHHHHHHHHHHHHHHcCC-EEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEe
Confidence 764333222 235566677788888888 7765541111221 23578899999999997544
Q ss_pred EeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 159 IEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 159 ~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+.+-...+. ....+.+.++ .++.|.+..
T Consensus 174 vaiGt~HG~-y~~~p~Ld~~-~L~~I~~~~ 201 (284)
T PRK09195 174 VAIGTAHGM-YKGEPKLDFD-RLENIRQWV 201 (284)
T ss_pred eccCccccc-cCCCCcCCHH-HHHHHHHHh
Confidence 433222221 1122345543 455565543
No 338
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=57.24 E-value=65 Score=27.87 Aligned_cols=78 Identities=15% Similarity=0.101 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCccCccc-----------cHHHHHHHHhccCCCCcEEEEeCcc-ch---HhhHHHHH
Q 022377 17 LNEILRLAYLFVTSGVDKIRLTGGEPTVRK-----------DIEEACFHLSKLKGLKTLAMTTNGL-TL---ARKLPKLK 81 (298)
Q Consensus 17 ~e~~~~~i~~~~~~~~~~v~~tGGEPll~~-----------~~~~ii~~~~~~~~~~~v~i~TNG~-ll---~~~~~~l~ 81 (298)
.+.+.+.|+.+..+|+..|.+.|+.+-..+ .+.++++.+++ .|+. +.+.+-.. .+ .+.++.+.
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~-~GV~-i~iE~~~~~~~~~~~~~~~ll~ 175 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASR-ASVT-LAFEIMDTPFMNSISKALGYAH 175 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHH-hCCE-EEEeecCCcccCCHHHHHHHHH
Confidence 345778888888999999998877532211 13466777776 4885 88876432 22 23344444
Q ss_pred HcCCCeEEEecCCCC
Q 022377 82 ESGLTSVNISLDTLV 96 (298)
Q Consensus 82 ~~~~~~v~iSldg~~ 96 (298)
+.+-..+.+.+|..+
T Consensus 176 ~v~~~~lgl~~D~~h 190 (283)
T PRK13209 176 YLNSPWFQLYPDIGN 190 (283)
T ss_pred HhCCCccceEeccch
Confidence 445567888888764
No 339
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=57.12 E-value=30 Score=30.53 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHHh--CCCCEEEE------cCCccCccccHHHHHHHHhccCCCCcEEEEeCccch-------HhhH
Q 022377 13 QLLSLNEILRLAYLFVT--SGVDKIRL------TGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-------ARKL 77 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~--~~~~~v~~------tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-------~~~~ 77 (298)
..|+++++.+.++.... ..+..|.+ .||.|.-..++.++.+.++++ ++. +.|. |..+ ...+
T Consensus 104 G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~-gl~-lhmD--GARl~~a~~~~~~~~ 179 (290)
T PF01212_consen 104 GKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREH-GLP-LHMD--GARLANAAAALGVSL 179 (290)
T ss_dssp TBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHH-T-E-EEEE--ETTHHHHHCHHHHHH
T ss_pred CCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhC-ceE-EEEe--hhhHHHhhhcccccH
Confidence 67999999999988655 22345555 279999889999999999996 875 6664 4433 2345
Q ss_pred HHHHHcCCCeEEEecC
Q 022377 78 PKLKESGLTSVNISLD 93 (298)
Q Consensus 78 ~~l~~~~~~~v~iSld 93 (298)
..+. .+.|.++||+.
T Consensus 180 ~e~~-~~~D~v~~~~t 194 (290)
T PF01212_consen 180 AEIA-AGADSVSFGGT 194 (290)
T ss_dssp HHHH-TTSSEEEEETT
T ss_pred HHHh-hhCCEEEEEEE
Confidence 6665 58999999974
No 340
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=56.93 E-value=1.3e+02 Score=26.07 Aligned_cols=130 Identities=13% Similarity=0.159 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHhCC--CCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHc----------
Q 022377 16 SLNEILRLAYLFVTSG--VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKES---------- 83 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~--~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~---------- 83 (298)
+++.-.++++.+..+| +.+.+|+||||.. .|++.. ++. +-++||..-..+.++.=..+
T Consensus 46 spdTGlRv~nSI~hygL~ItR~~ft~G~~~~--------~Yl~af-~v~-LFLSan~~DV~~Ai~~G~~Aa~v~~~~~~~ 115 (264)
T PF06189_consen 46 SPDTGLRVFNSIRHYGLDITRAAFTGGESPY--------PYLKAF-NVD-LFLSANEDDVQEAIDAGIPAATVLPSPPDD 115 (264)
T ss_pred CHHHHHHHHHhHHHhCCcceeeeecCCCCHH--------HHHHHh-CCc-eEeeCCHHHHHHHHHcCCCcEEeecCCCCC
Confidence 6778888998888866 6799999999853 345442 553 55655553221111100000
Q ss_pred --CCCeEEEecCCC-------CHHhhhhh----------------cCCCcHHHHHHHHHHHHHc---CCCCEEEEEEEec
Q 022377 84 --GLTSVNISLDTL-------VPAKFEFL----------------TRRKGHEKVMESINAAIEV---GYNPVKVNCVVMR 135 (298)
Q Consensus 84 --~~~~v~iSldg~-------~~~~~~~i----------------r~~~~~~~v~~~i~~l~~~---g~~~v~i~~vi~~ 135 (298)
.-+.+.|-+||. .+..|..- -..+.|...+..|..+++. .-.++.+..|..+
T Consensus 116 ~~~~~qlRIAFDgDaVLfsDesE~vy~~~GL~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtalVTAR 195 (264)
T PF06189_consen 116 DESDDQLRIAFDGDAVLFSDESERVYQEQGLEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTALVTAR 195 (264)
T ss_pred CCCCCceEEEEcCCeEeecCcchHhHHhccHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEEEEcC
Confidence 013355555541 11233220 0235699999999999875 1125666666666
Q ss_pred CCCHhHHHHHHHHHhhCCCeeE
Q 022377 136 GFNDDEICDFVELTRDRPINIR 157 (298)
Q Consensus 136 ~~n~~~i~~i~~~~~~~g~~~~ 157 (298)
|...-+..++-++++|+.+.
T Consensus 196 --~apah~RvI~TLr~Wgv~vD 215 (264)
T PF06189_consen 196 --SAPAHERVIRTLRSWGVRVD 215 (264)
T ss_pred --CCchhHHHHHHHHHcCCcHh
Confidence 33333889999999998653
No 341
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=56.63 E-value=96 Score=28.39 Aligned_cols=109 Identities=11% Similarity=0.090 Sum_probs=72.2
Q ss_pred CCHHHHHHHHH-HHHhCCCCEEEEc-----CCccCc---cccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHc-C
Q 022377 15 LSLNEILRLAY-LFVTSGVDKIRLT-----GGEPTV---RKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKES-G 84 (298)
Q Consensus 15 l~~e~~~~~i~-~~~~~~~~~v~~t-----GGEPll---~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~-~ 84 (298)
=+.+++.++++ ++.++++..+.+. ++|-+- +++..++++++++...+..++++|.|+ .+.+.+++++ .
T Consensus 90 ~~~edm~r~fneqLekl~~Dy~D~yliH~l~~e~~~k~~~~g~~df~~kak~eGkIr~~GFSfHgs--~e~~~~iv~a~~ 167 (391)
T COG1453 90 KDREDMERIFNEQLEKLGTDYIDYYLIHGLNTETWEKIERLGVFDFLEKAKAEGKIRNAGFSFHGS--TEVFKEIVDAYP 167 (391)
T ss_pred cCHHHHHHHHHHHHHHhCCchhhhhhhccccHHHHHHHHccChHHHHHHHHhcCcEEEeeecCCCC--HHHHHHHHhcCC
Confidence 45778888776 6666887666553 244332 355789999999864455688888883 3444444444 4
Q ss_pred CCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecC
Q 022377 85 LTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRG 136 (298)
Q Consensus 85 ~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~ 136 (298)
.|.+++-..-.+.+. ....++++.+.+.|. .|.|.--+-.|
T Consensus 168 ~dfvqlq~ny~d~~n----------~~~~~~l~~A~~~~~-gI~IMeP~~gG 208 (391)
T COG1453 168 WDFVQLQYNYIDQKN----------QAGTEGLKYAASKGL-GIFIMEPLDGG 208 (391)
T ss_pred cceEEeeeeeeccch----------hcccHHHHHHHhCCC-cEEEEeeCCCC
Confidence 788999888775432 122678999999998 77665555444
No 342
>PRK00915 2-isopropylmalate synthase; Validated
Probab=56.27 E-value=1.9e+02 Score=27.79 Aligned_cols=55 Identities=18% Similarity=0.329 Sum_probs=24.9
Q ss_pred cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 83 SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 83 ~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
+|.+.|..|+.|..+ ..|.-+.+.++-+++...+. |+ .. +.+.+.+.++.+++.+
T Consensus 220 aGa~~Vd~Tv~GlGE-----RaGNa~lE~vv~~L~~~~~~~g~-~~--------~idl~~l~~~s~~v~~ 275 (513)
T PRK00915 220 AGARQVECTINGIGE-----RAGNAALEEVVMALKTRKDIYGV-ET--------GINTEEIYRTSRLVSQ 275 (513)
T ss_pred hCCCEEEEEeecccc-----cccCccHHHHHHHHHhhhcccCC-CC--------CcCHHHHHHHHHHHHH
Confidence 355555555555431 11222355665555554333 43 21 2445555555554443
No 343
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=55.89 E-value=2.9e+02 Score=29.67 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEc--CCccCcccc-HHHHHHHHhccCCCCcEEEEeC---ccchHhhHHHHHHcCC
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLT--GGEPTVRKD-IEEACFHLSKLKGLKTLAMTTN---GLTLARKLPKLKESGL 85 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~t--GGEPll~~~-~~~ii~~~~~~~~~~~v~i~TN---G~ll~~~~~~l~~~~~ 85 (298)
+..-+.+-+.++++++.+.|+..|+|. .| ++.|. ..++++.+++..++. +.+.|. |.-+...+.. .++|+
T Consensus 683 ~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~G--ll~P~~~~~Lv~~lk~~~~~p-i~~H~Hdt~Gla~an~laA-~eaGa 758 (1143)
T TIGR01235 683 RPKYDLKYYTNLAVELEKAGAHILGIKDMAG--LLKPAAAKLLIKALREKTDLP-IHFHTHDTSGIAVASMLAA-VEAGV 758 (1143)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCcC--CcCHHHHHHHHHHHHHhcCCe-EEEEECCCCCcHHHHHHHH-HHhCC
Confidence 345678888899999999999999995 34 55665 558888887755664 777654 4333344444 46799
Q ss_pred CeEEEecCCC
Q 022377 86 TSVNISLDTL 95 (298)
Q Consensus 86 ~~v~iSldg~ 95 (298)
+.|..|+.|.
T Consensus 759 d~vD~ai~gl 768 (1143)
T TIGR01235 759 DVVDVAVDSM 768 (1143)
T ss_pred CEEEecchhh
Confidence 9999999987
No 344
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=55.38 E-value=29 Score=30.77 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEE--Ec--------------------------CCccCccccHHHHHHHHhccCCCC
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIR--LT--------------------------GGEPTVRKDIEEACFHLSKLKGLK 62 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~--~t--------------------------GGEPll~~~~~~ii~~~~~~~~~~ 62 (298)
.+..++.+.++++|+.+..++...+. |+ +|..+-..++.+|+++++++ |+.
T Consensus 9 aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~yA~~r-gI~ 87 (303)
T cd02742 9 SRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEYAAAR-GIE 87 (303)
T ss_pred cccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHHHHHc-CCE
Confidence 45889999999999999997765433 33 23344556788999999994 874
Q ss_pred cEE
Q 022377 63 TLA 65 (298)
Q Consensus 63 ~v~ 65 (298)
|.
T Consensus 88 -vi 89 (303)
T cd02742 88 -VI 89 (303)
T ss_pred -EE
Confidence 54
No 345
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=55.24 E-value=1.1e+02 Score=24.70 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=28.9
Q ss_pred EEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCc
Q 022377 35 IRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNG 70 (298)
Q Consensus 35 v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG 70 (298)
..+.|.+.-+.|+..++++.+++ .|+. +.+.||.
T Consensus 37 ~~~~~~~~~l~pGv~elL~~Lk~-~G~~-l~I~Sn~ 70 (174)
T TIGR01685 37 IDKSGTEVTLIKEVRDVLQTLKD-AGTY-LATASWN 70 (174)
T ss_pred EeCCCCEEEEcccHHHHHHHHHH-CCCE-EEEEeCC
Confidence 34568888899999999999998 4995 9999987
No 346
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=54.98 E-value=96 Score=24.59 Aligned_cols=52 Identities=15% Similarity=0.335 Sum_probs=40.8
Q ss_pred hcCCCc-HHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCee
Q 022377 103 LTRRKG-HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI 156 (298)
Q Consensus 103 ir~~~~-~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~ 156 (298)
+.|..+ |+..-++.+.|.+.|+ +.++.++--- .+-+.+.++++-+.+.|+++
T Consensus 8 IMGS~SD~~~mk~Aa~~L~~fgi-~ye~~VvSAH-RTPe~m~~ya~~a~~~g~~v 60 (162)
T COG0041 8 IMGSKSDWDTMKKAAEILEEFGV-PYEVRVVSAH-RTPEKMFEYAEEAEERGVKV 60 (162)
T ss_pred EecCcchHHHHHHHHHHHHHcCC-CeEEEEEecc-CCHHHHHHHHHHHHHCCCeE
Confidence 345544 9999999999999999 8887765443 57788899999999889864
No 347
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=54.75 E-value=1.6e+02 Score=26.50 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccCcccc-HHHHHHHHhccCCCCcEEE-EeCccchHh
Q 022377 19 EILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAM-TTNGLTLAR 75 (298)
Q Consensus 19 ~~~~~i~~~~~~~~~~v~~tGGEPll~~~-~~~ii~~~~~~~~~~~v~i-~TNG~ll~~ 75 (298)
...+.++.+++.|.....+.---+...++ +.++++.+.+. |...+.| .|.|.++++
T Consensus 115 ~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~-Ga~~i~i~DT~G~~~P~ 172 (333)
T TIGR03217 115 VSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESY-GADCVYIVDSAGAMLPD 172 (333)
T ss_pred HHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhc-CCCEEEEccCCCCCCHH
Confidence 34455555555553321111111222223 33555555442 4332332 356655543
No 348
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=54.27 E-value=1.1e+02 Score=26.87 Aligned_cols=74 Identities=15% Similarity=0.199 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHHhCC-CCEEEE-------c-CCccCc-cccHH-HHHHHHhccCCCCcEEEEeCccc--hHhhHHHHHH
Q 022377 16 SLNEILRLAYLFVTSG-VDKIRL-------T-GGEPTV-RKDIE-EACFHLSKLKGLKTLAMTTNGLT--LARKLPKLKE 82 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~-~~~v~~-------t-GGEPll-~~~~~-~ii~~~~~~~~~~~v~i~TNG~l--l~~~~~~l~~ 82 (298)
+.+++.+..+.+.+.| ...|.| . ||..++ ++++. ++++.+++..++. +.+=.+... +.+.++.+.+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~p-v~vKl~~~~~~~~~~a~~l~~ 180 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVP-VIVKLTPNVTDIVEIAKAAEE 180 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCC-EEEEcCCCchhHHHHHHHHHH
Confidence 6788888888888887 777766 2 355444 35544 8888888743553 554333322 2345667777
Q ss_pred cCCCeEEE
Q 022377 83 SGLTSVNI 90 (298)
Q Consensus 83 ~~~~~v~i 90 (298)
+|++.|.+
T Consensus 181 ~G~d~i~~ 188 (301)
T PRK07259 181 AGADGLSL 188 (301)
T ss_pred cCCCEEEE
Confidence 88887765
No 349
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=53.84 E-value=36 Score=30.41 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=42.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEc--------------------C--CccCccccHHHHHHHHhccCCCCcEE--
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLT--------------------G--GEPTVRKDIEEACFHLSKLKGLKTLA-- 65 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~t--------------------G--GEPll~~~~~~ii~~~~~~~~~~~v~-- 65 (298)
-.++.++.+.++++|+.+..++...+.+. | |+.+-..++.+|+++++++ |+. |.
T Consensus 10 ~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT~~di~elv~yA~~r-gI~-vIPE 87 (311)
T cd06570 10 VSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYTQEQIREVVAYARDR-GIR-VVPE 87 (311)
T ss_pred cCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccCHHHHHHHHHHHHHc-CCE-EEEe
Confidence 35677999999999999999876644442 1 3455556788999999984 874 54
Q ss_pred EEeCcc
Q 022377 66 MTTNGL 71 (298)
Q Consensus 66 i~TNG~ 71 (298)
|.+=|.
T Consensus 88 Id~PGH 93 (311)
T cd06570 88 IDVPGH 93 (311)
T ss_pred ecCccc
Confidence 444454
No 350
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=53.75 E-value=58 Score=25.14 Aligned_cols=75 Identities=19% Similarity=0.132 Sum_probs=44.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch------HhhHHHHHHc
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL------ARKLPKLKES 83 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll------~~~~~~l~~~ 83 (298)
-=+...+.+++.+.+. +.++.-|.+|-=-+.....+.++++.+++. +...+.+.--|... .+..+++++.
T Consensus 36 ~LG~~vp~e~i~~~a~---~~~~d~V~lS~~~~~~~~~~~~~~~~L~~~-~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~ 111 (137)
T PRK02261 36 NLGVMTSQEEFIDAAI---ETDADAILVSSLYGHGEIDCRGLREKCIEA-GLGDILLYVGGNLVVGKHDFEEVEKKFKEM 111 (137)
T ss_pred ECCCCCCHHHHHHHHH---HcCCCEEEEcCccccCHHHHHHHHHHHHhc-CCCCCeEEEECCCCCCccChHHHHHHHHHc
Confidence 3355678888765554 556677777743334445566777777764 43234444444431 3355788888
Q ss_pred CCCeE
Q 022377 84 GLTSV 88 (298)
Q Consensus 84 ~~~~v 88 (298)
|++.|
T Consensus 112 G~~~v 116 (137)
T PRK02261 112 GFDRV 116 (137)
T ss_pred CCCEE
Confidence 87733
No 351
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=53.63 E-value=76 Score=26.68 Aligned_cols=70 Identities=17% Similarity=0.120 Sum_probs=44.4
Q ss_pred HHHHHHHHHhCCCCEEEEcC--CccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHH-HHHcCCCeEEEe
Q 022377 20 ILRLAYLFVTSGVDKIRLTG--GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPK-LKESGLTSVNIS 91 (298)
Q Consensus 20 ~~~~i~~~~~~~~~~v~~tG--GEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~-l~~~~~~~v~iS 91 (298)
...++.++.+.|+..|.+++ .+.....-..++++.+++..++. + +.+.|..-.+.+.+ +...|++.|.++
T Consensus 155 ~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ip-v-ia~GGi~s~~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 155 PVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIP-V-IALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCC-E-EEECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 34566777788999999987 33333322356677776644553 3 43444443556666 888899988876
No 352
>PRK05990 precorrin-2 C(20)-methyltransferase; Reviewed
Probab=53.59 E-value=42 Score=28.66 Aligned_cols=46 Identities=11% Similarity=0.054 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEe
Q 022377 20 ILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTT 68 (298)
Q Consensus 20 ~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~T 68 (298)
+.+.+.+..+.|-..+.+++|+|+++..+..+++.+.+ ++. +.+.-
T Consensus 87 ~~~~i~~~~~~G~~Vv~L~~GDP~iyst~~~l~~~l~~--~i~-~evIP 132 (241)
T PRK05990 87 SAEAVAAHLDAGRDVAVICEGDPFFYGSYMYLHDRLAP--RYE-TEVIP 132 (241)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCcHHHhHHHHHHHHHhc--CCC-EEEEC
Confidence 33444444555756777899999999988888888754 564 66643
No 353
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=53.36 E-value=1.6e+02 Score=25.87 Aligned_cols=165 Identities=11% Similarity=0.083 Sum_probs=96.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEE-EcCCc-cCcccc-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIR-LTGGE-PTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~-~tGGE-Pll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
+-.+.+.+..+++.+.+.+.+-|. ++-|+ .....+ +..++..+.+...+. |.+...=-.-.+.+.+..+.|+++|.
T Consensus 19 N~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~VP-V~lHLDH~~~~~~i~~ai~~GftSVM 97 (276)
T cd00947 19 NINNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERASVP-VALHLDHGSSFELIKRAIRAGFSSVM 97 (276)
T ss_pred eeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHhCCCEEE
Confidence 456789999999999888755333 33233 223223 456666665545775 87765532223556777788999888
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC---------HhHHHHHHHHHhhCCCeeEEEe
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN---------DDEICDFVELTRDRPINIRFIE 160 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n---------~~~i~~i~~~~~~~g~~~~~~~ 160 (298)
|.--..+-+ .+...+.+.++.++..|+ .|+...=-..|.. +.+.++..+|+.+.|++.--+.
T Consensus 98 iD~S~l~~e--------eNi~~t~~vv~~ah~~gv-~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvs 168 (276)
T cd00947 98 IDGSHLPFE--------ENVAKTKEVVELAHAYGV-SVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVA 168 (276)
T ss_pred eCCCCCCHH--------HHHHHHHHHHHHHHHcCC-eEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEec
Confidence 764443222 235677778888888898 7766541111222 2358889999999998754443
Q ss_pred eecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 161 FMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 161 ~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+-...+.--...+.+.++ .++.|.+..
T Consensus 169 iGt~HG~Y~~~~p~L~~~-~L~~i~~~~ 195 (276)
T cd00947 169 IGTSHGAYKGGEPKLDFD-RLKEIAERV 195 (276)
T ss_pred cCccccccCCCCCccCHH-HHHHHHHHh
Confidence 332222111112345543 455665543
No 354
>PRK06256 biotin synthase; Validated
Probab=53.35 E-value=55 Score=29.34 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHh-CCCCEEEEcCCccCcccc
Q 022377 15 LSLNEILRLAYLFVT-SGVDKIRLTGGEPTVRKD 47 (298)
Q Consensus 15 l~~e~~~~~i~~~~~-~~~~~v~~tGGEPll~~~ 47 (298)
++.+++.+++..+.- +.-..|.++||++....+
T Consensus 252 ~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~ 285 (336)
T PRK06256 252 LTPLECLKTIAIFRLINPDKEIRIAGGREVNLRS 285 (336)
T ss_pred CCHHHHHHHHHHHHHHCCCCeeEecCchhhhchh
Confidence 455555554443222 222345555555433333
No 355
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=53.25 E-value=70 Score=26.59 Aligned_cols=70 Identities=24% Similarity=0.367 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHH-cCCCeEEEe
Q 022377 20 ILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKE-SGLTSVNIS 91 (298)
Q Consensus 20 ~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~-~~~~~v~iS 91 (298)
..+.++++.++|+..|-=+||.|.....+..+-+.+....+ ++.|.--|=+-.+.+..+.+ .|+..+..|
T Consensus 129 ~~~al~~L~~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~--~i~Im~GgGv~~~nv~~l~~~tg~~~~H~s 199 (201)
T PF03932_consen 129 PEEALEQLIELGFDRVLTSGGAPTALEGIENLKELVEQAKG--RIEIMPGGGVRAENVPELVEETGVREIHGS 199 (201)
T ss_dssp HHHHHHHHHHHT-SEEEESTTSSSTTTCHHHHHHHHHHHTT--SSEEEEESS--TTTHHHHHHHHT-SEEEET
T ss_pred HHHHHHHHHhcCCCEEECCCCCCCHHHHHHHHHHHHHHcCC--CcEEEecCCCCHHHHHHHHHhhCCeEEeec
Confidence 34556777777888877778887776654433333332212 13343333234455666655 788877766
No 356
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=53.22 E-value=63 Score=25.51 Aligned_cols=81 Identities=23% Similarity=0.199 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHh-CCCCEEEEcC-CccCccccH-HHHHHHHhccCCCCcEEEEeC--ccchHhhHHHHHHcCCCeEEEe
Q 022377 17 LNEILRLAYLFVT-SGVDKIRLTG-GEPTVRKDI-EEACFHLSKLKGLKTLAMTTN--GLTLARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 17 ~e~~~~~i~~~~~-~~~~~v~~tG-GEPll~~~~-~~ii~~~~~~~~~~~v~i~TN--G~ll~~~~~~l~~~~~~~v~iS 91 (298)
.+++.++++++.+ .+++.|.+.| |-=.+-++. .+++..... .++. +.+.+| ...+......+...+--.|.+|
T Consensus 4 ~~~i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~-~~~~-i~~~~~~D~~~~~~~~~~~~~~~tlvi~iS 81 (158)
T cd05015 4 LERIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFK-GGLR-LHFVSNVDPDDLAELLKKLDPETTLFIVIS 81 (158)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhcc-CCce-EEEEeCCCHHHHHHHHHhCCcccEEEEEEE
Confidence 5677788888876 3688999875 554554443 355554432 2553 556666 4333344444432334458899
Q ss_pred cCCCCHHh
Q 022377 92 LDTLVPAK 99 (298)
Q Consensus 92 ldg~~~~~ 99 (298)
--|.++|+
T Consensus 82 kSG~T~Et 89 (158)
T cd05015 82 KSGTTLET 89 (158)
T ss_pred CCcCCHHH
Confidence 88877775
No 357
>PTZ00175 diphthine synthase; Provisional
Probab=53.20 E-value=46 Score=29.04 Aligned_cols=51 Identities=12% Similarity=0.096 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch
Q 022377 19 EILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL 73 (298)
Q Consensus 19 ~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll 73 (298)
+...+++.+. +-..+.+++|+|++.....+++..+++. |+. +.+.-|.+.+
T Consensus 66 ~~~~ii~~a~--~~~Vv~L~~GDP~i~~t~~~l~~~~~~~-gi~-vevIPGvSi~ 116 (270)
T PTZ00175 66 GCDEILEEAK--EKNVAFLVVGDPFCATTHTDLYLRAKKK-GIE-VEVIHNASIM 116 (270)
T ss_pred HHHHHHHHhC--CCCEEEEECCCCCccCCHHHHHHHHHHC-CCc-EEEECCcCHH
Confidence 4445666553 3356677899999999999888899884 996 9888776544
No 358
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=53.05 E-value=1.8e+02 Score=26.34 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhCCCCE-EEEcCCccCcccc-HHHHHHHHhccCCCCcEE-EEeCccchHhhH----HHHHHcCC-CeEE
Q 022377 18 NEILRLAYLFVTSGVDK-IRLTGGEPTVRKD-IEEACFHLSKLKGLKTLA-MTTNGLTLARKL----PKLKESGL-TSVN 89 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~~-v~~tGGEPll~~~-~~~ii~~~~~~~~~~~v~-i~TNG~ll~~~~----~~l~~~~~-~~v~ 89 (298)
+...+.++.+++.|... +.+... +...++ +.++++.+.+. |...+. ..|.|.++++.+ ..+++ .+ ..+.
T Consensus 115 ~~~~~~i~~ak~~G~~v~~~l~~a-~~~~~e~l~~~a~~~~~~-Ga~~i~i~DT~G~~~P~~v~~~v~~l~~-~l~~~i~ 191 (337)
T PRK08195 115 DVSEQHIGLARELGMDTVGFLMMS-HMAPPEKLAEQAKLMESY-GAQCVYVVDSAGALLPEDVRDRVRALRA-ALKPDTQ 191 (337)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEec-cCCCHHHHHHHHHHHHhC-CCCEEEeCCCCCCCCHHHHHHHHHHHHH-hcCCCCe
Confidence 34555666666666331 112111 222333 34555555553 443333 246676665433 33332 22 2355
Q ss_pred EecCC
Q 022377 90 ISLDT 94 (298)
Q Consensus 90 iSldg 94 (298)
|.+++
T Consensus 192 ig~H~ 196 (337)
T PRK08195 192 VGFHG 196 (337)
T ss_pred EEEEe
Confidence 66555
No 359
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=53.04 E-value=1.7e+02 Score=26.23 Aligned_cols=101 Identities=21% Similarity=0.213 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhCCCCEEEE--cCCccCccccHHHHHHHHhccCC-CCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCC
Q 022377 19 EILRLAYLFVTSGVDKIRL--TGGEPTVRKDIEEACFHLSKLKG-LKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDT 94 (298)
Q Consensus 19 ~~~~~i~~~~~~~~~~v~~--tGGEPll~~~~~~ii~~~~~~~~-~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg 94 (298)
+....++.+.+.|+..|.+ +.|.| ....++++.+++... +. +.+ |... .+..+.+.++|.|.|.+.+-+
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G~~---~~~~~~i~~ik~~~p~v~-Vi~---G~v~t~~~A~~l~~aGaD~I~vg~g~ 166 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHGHS---VYVIEMIKFIKKKYPNVD-VIA---GNVVTAEAARDLIDAGADGVKVGIGP 166 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCCCc---HHHHHHHHHHHHHCCCce-EEE---CCCCCHHHHHHHHhcCCCEEEECCCC
Confidence 3345556666678876665 45655 456788888887422 42 333 3334 467888889999998886522
Q ss_pred CCHHhhhhhc--CCCcHHHHHHHHHHHHHcCCCCE
Q 022377 95 LVPAKFEFLT--RRKGHEKVMESINAAIEVGYNPV 127 (298)
Q Consensus 95 ~~~~~~~~ir--~~~~~~~v~~~i~~l~~~g~~~v 127 (298)
-......... +.+.+..+.+..+.+.+.++ ++
T Consensus 167 G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~v-pV 200 (325)
T cd00381 167 GSICTTRIVTGVGVPQATAVADVAAAARDYGV-PV 200 (325)
T ss_pred CcCcccceeCCCCCCHHHHHHHHHHHHhhcCC-cE
Confidence 1101111111 22346666665555555666 53
No 360
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=52.57 E-value=1.7e+02 Score=25.89 Aligned_cols=163 Identities=11% Similarity=0.094 Sum_probs=94.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCc---cCcccc-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGE---PTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSV 88 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGE---Pll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v 88 (298)
+-.+.|.+..+++.+.+.+.+-| |...+ ..+..+ +..++..+.+..++. |.+...=-.--+.+.+-.++|+.+|
T Consensus 24 N~~n~e~~~avi~AAee~~sPvI-lq~s~~~~~~~~~~~~~~~~~~~a~~~~VP-ValHLDHg~~~e~i~~ai~~GFtSV 101 (286)
T PRK12738 24 NIHNAETIQAILEVCSEMRSPVI-LAGTPGTFKHIALEEIYALCSAYSTTYNMP-LALHLDHHESLDDIRRKVHAGVRSA 101 (286)
T ss_pred EeCCHHHHHHHHHHHHHHCCCEE-EEcCcchhhhCCHHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHcCCCeE
Confidence 45688999999999988875433 33222 222333 446666655545775 8776552222346777778899988
Q ss_pred EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC-----------HhHHHHHHHHHhhCCCeeE
Q 022377 89 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN-----------DDEICDFVELTRDRPINIR 157 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n-----------~~~i~~i~~~~~~~g~~~~ 157 (298)
.+.--..+-+ .+...+.+.++.++..|+ .|+...=-..|.. +.+.++..+|+.+.|++.-
T Consensus 102 M~DgS~lp~e--------eNi~~T~evv~~Ah~~gv-~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~L 172 (286)
T PRK12738 102 MIDGSHFPFA--------ENVKLVKSVVDFCHSQDC-SVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSL 172 (286)
T ss_pred eecCCCCCHH--------HHHHHHHHHHHHHHHcCC-eEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEE
Confidence 8764333212 235667778888888888 7765541111211 2357889999999999754
Q ss_pred EEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 158 FIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 158 ~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
-+.+-...+. ....+.+.++ .++.|.+..
T Consensus 173 AvaiGt~HG~-Y~~~p~Ldfd-~l~~I~~~~ 201 (286)
T PRK12738 173 AVAIGTAHGL-YSKTPKIDFQ-RLAEIREVV 201 (286)
T ss_pred EeccCcccCC-CCCCCcCCHH-HHHHHHHHh
Confidence 4433222221 2222345543 445555543
No 361
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=52.41 E-value=1.3e+02 Score=24.59 Aligned_cols=64 Identities=20% Similarity=0.160 Sum_probs=40.7
Q ss_pred HHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEE
Q 022377 21 LRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 90 (298)
Q Consensus 21 ~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~i 90 (298)
.+.++.+.+.|...|.+.++.+ .+....++.+++. ++. +.+..+.....+.++.+.. +.+.+.+
T Consensus 69 ~~~~~~~~~~gadgv~vh~~~~---~~~~~~~~~~~~~-g~~-~~~~~~~~t~~e~~~~~~~-~~d~i~~ 132 (210)
T TIGR01163 69 DRYIEDFAEAGADIITVHPEAS---EHIHRLLQLIKDL-GAK-AGIVLNPATPLEFLEYVLP-DVDLVLL 132 (210)
T ss_pred HHHHHHHHHcCCCEEEEccCCc---hhHHHHHHHHHHc-CCc-EEEEECCCCCHHHHHHHHh-hCCEEEE
Confidence 3557777788889999988654 4456777777774 764 6665444333455666644 4676543
No 362
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=52.21 E-value=1.6e+02 Score=25.72 Aligned_cols=86 Identities=17% Similarity=0.244 Sum_probs=56.9
Q ss_pred CCCcEEEEeCccchH---hhHHHHHHcCCCeEEEecCCCCHHhhhhhcCC---CcHHHHHHHHHHHHHc-CCCCEEEEEE
Q 022377 60 GLKTLAMTTNGLTLA---RKLPKLKESGLTSVNISLDTLVPAKFEFLTRR---KGHEKVMESINAAIEV-GYNPVKVNCV 132 (298)
Q Consensus 60 ~~~~v~i~TNG~ll~---~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~---~~~~~v~~~i~~l~~~-g~~~v~i~~v 132 (298)
+.. +.++=+|...+ +.++.+.++|.|.|.|.+-.+.... ++. .+.+.+.+-++.+++. ++ ++.+.+
T Consensus 89 ~~p-~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~----~g~~~~~~~~~~~eiv~~vr~~~~~-Pv~vKl- 161 (296)
T cd04740 89 GTP-VIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKG----GGMAFGTDPEAVAEIVKAVKKATDV-PVIVKL- 161 (296)
T ss_pred CCc-EEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCC----CcccccCCHHHHHHHHHHHHhccCC-CEEEEe-
Confidence 443 66666666554 3467777888999999888765321 111 2356666667777766 67 777764
Q ss_pred EecCCCHhHHHHHHHHHhhCCCe
Q 022377 133 VMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 133 i~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
.+ +.+++.++++.+.+.|++
T Consensus 162 -~~--~~~~~~~~a~~~~~~G~d 181 (296)
T cd04740 162 -TP--NVTDIVEIARAAEEAGAD 181 (296)
T ss_pred -CC--CchhHHHHHHHHHHcCCC
Confidence 33 556788999988888885
No 363
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=52.15 E-value=49 Score=27.77 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=24.1
Q ss_pred cCccccHHHHHHHHhccCCCCcEEEEeCccc
Q 022377 42 PTVRKDIEEACFHLSKLKGLKTLAMTTNGLT 72 (298)
Q Consensus 42 Pll~~~~~~ii~~~~~~~~~~~v~i~TNG~l 72 (298)
.-+.|++.++++.+++. |+. +.+.||+..
T Consensus 92 ~~~~~g~~e~L~~Lk~~-g~~-~~i~Tn~~~ 120 (224)
T PRK14988 92 AVLREDTVPFLEALKAS-GKR-RILLTNAHP 120 (224)
T ss_pred CCcCCCHHHHHHHHHhC-CCe-EEEEeCcCH
Confidence 45578899999999994 985 999999853
No 364
>PRK08284 precorrin 6A synthase; Provisional
Probab=52.12 E-value=48 Score=28.62 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc--CCCCcEEEEeC
Q 022377 21 LRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL--KGLKTLAMTTN 69 (298)
Q Consensus 21 ~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~--~~~~~v~i~TN 69 (298)
.+.|.+..+.|-..+.++.|+|+++..+..+++.+.+. .++. +.+.-.
T Consensus 93 ~~~i~~~l~~g~~Vv~l~~GDP~~ys~~~~l~~~l~~~~~~~i~-vevVPG 142 (253)
T PRK08284 93 ERLIAEELPDGGTGAFLVWGDPSLYDSTLRILERVRARGRVAFD-YEVIPG 142 (253)
T ss_pred HHHHHHHHhCCCcEEEEeCCCcchhhHHHHHHHHHHhhccCCCc-EEEECC
Confidence 44555555667667778999999999888888888762 3674 766543
No 365
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.08 E-value=37 Score=30.87 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccCc-----cccHHHHHHHHhccC--CCCcEEEEeCccc-hHhhHHHHHHcCC
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTV-----RKDIEEACFHLSKLK--GLKTLAMTTNGLT-LARKLPKLKESGL 85 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll-----~~~~~~ii~~~~~~~--~~~~v~i~TNG~l-l~~~~~~l~~~~~ 85 (298)
-++.++...++..+.+.|+..|.+++|-..- .+......+.+++.. ++. +..||-+ ..+.++++.+.+.
T Consensus 231 g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iP---Vi~~Ggi~t~e~ae~~l~~ga 307 (353)
T cd04735 231 GIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLP---LIAVGSINTPDDALEALETGA 307 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCC---EEEECCCCCHHHHHHHHHcCC
Confidence 4678999999999999999999998753211 111234444444422 332 4455544 3666777777676
Q ss_pred CeEEEe
Q 022377 86 TSVNIS 91 (298)
Q Consensus 86 ~~v~iS 91 (298)
|.|.+.
T Consensus 308 D~V~~g 313 (353)
T cd04735 308 DLVAIG 313 (353)
T ss_pred ChHHHh
Confidence 655544
No 366
>PTZ00445 p36-lilke protein; Provisional
Probab=52.01 E-value=58 Score=27.38 Aligned_cols=55 Identities=22% Similarity=0.291 Sum_probs=38.6
Q ss_pred CCCHHH-HHHHHHHHHhCCCCEEEE----------cC--CccC---------ccccHHHHHHHHhccCCCCcEEEEeCc
Q 022377 14 LLSLNE-ILRLAYLFVTSGVDKIRL----------TG--GEPT---------VRKDIEEACFHLSKLKGLKTLAMTTNG 70 (298)
Q Consensus 14 ~l~~e~-~~~~i~~~~~~~~~~v~~----------tG--GEPl---------l~~~~~~ii~~~~~~~~~~~v~i~TNG 70 (298)
.++..+ +..+++.+.+.|++.|.+ || .+|. +.|++..++..+++ .++. +.++|=.
T Consensus 24 ~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~-~~I~-v~VVTfS 100 (219)
T PTZ00445 24 HLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKN-SNIK-ISVVTFS 100 (219)
T ss_pred cCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHH-CCCe-EEEEEcc
Confidence 455555 455777888899876554 34 4687 77888888888888 4885 8877643
No 367
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=51.94 E-value=1e+02 Score=24.17 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=7.6
Q ss_pred hhHHHHHHcCCCeEE
Q 022377 75 RKLPKLKESGLTSVN 89 (298)
Q Consensus 75 ~~~~~l~~~~~~~v~ 89 (298)
+.++.|++.|...+.
T Consensus 82 ~lve~lre~G~~~i~ 96 (143)
T COG2185 82 GLVEALREAGVEDIL 96 (143)
T ss_pred HHHHHHHHhCCcceE
Confidence 345555555555444
No 368
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=51.38 E-value=1.2e+02 Score=30.80 Aligned_cols=80 Identities=18% Similarity=0.236 Sum_probs=53.6
Q ss_pred CCCCCHHHHHHHHHHHHh-------CCCCEEEEcCC---------ccCccc-------------cH-HHHHHHHhccC--
Q 022377 12 PQLLSLNEILRLAYLFVT-------SGVDKIRLTGG---------EPTVRK-------------DI-EEACFHLSKLK-- 59 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-------~~~~~v~~tGG---------EPll~~-------------~~-~~ii~~~~~~~-- 59 (298)
..+||.+||.++++++.+ .|...|.+.+| -|..+. .+ .++++.+++.-
T Consensus 538 p~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~ 617 (765)
T PRK08255 538 PREMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPA 617 (765)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCC
Confidence 368999999998875544 68889999887 676532 23 38888888742
Q ss_pred CCCcEEEEeC-------ccchH---hhHHHHHHcCCCeEEEec
Q 022377 60 GLKTLAMTTN-------GLTLA---RKLPKLKESGLTSVNISL 92 (298)
Q Consensus 60 ~~~~v~i~TN-------G~ll~---~~~~~l~~~~~~~v~iSl 92 (298)
++. +.+--| |.-.+ +.++.|.+.|++.|.||-
T Consensus 618 ~~~-v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~ 659 (765)
T PRK08255 618 EKP-MSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSS 659 (765)
T ss_pred CCe-eEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCC
Confidence 332 443222 32233 245677788999999985
No 369
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=50.87 E-value=1.6e+02 Score=25.24 Aligned_cols=87 Identities=17% Similarity=0.132 Sum_probs=42.0
Q ss_pred CCCcEEEEeCccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCc--HHHHHHHHHHHHHcCCCCEEEEEEEec--
Q 022377 60 GLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKG--HEKVMESINAAIEVGYNPVKVNCVVMR-- 135 (298)
Q Consensus 60 ~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~--~~~v~~~i~~l~~~g~~~v~i~~vi~~-- 135 (298)
|+.++.+-|-+..-++.+.++.+..-+.|.++||.-..+ ..+.|-.. --...+.++.+.+.|. .-.+-|-+.+
T Consensus 97 G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~--vav~GW~e~s~~~~~~l~~~~~~~g~-~~ii~TdI~~DG 173 (241)
T COG0106 97 GVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGK--VAVSGWQEDSGVELEELAKRLEEVGL-AHILYTDISRDG 173 (241)
T ss_pred CCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCc--cccccccccccCCHHHHHHHHHhcCC-CeEEEEeccccc
Confidence 444455555553334555555443336677777764322 23333211 1144556666666666 4333333332
Q ss_pred ---CCCHhHHHHHHHHH
Q 022377 136 ---GFNDDEICDFVELT 149 (298)
Q Consensus 136 ---~~n~~~i~~i~~~~ 149 (298)
|.|.+-..++.+..
T Consensus 174 tl~G~n~~l~~~l~~~~ 190 (241)
T COG0106 174 TLSGPNVDLVKELAEAV 190 (241)
T ss_pred ccCCCCHHHHHHHHHHh
Confidence 34555555555544
No 370
>PRK06801 hypothetical protein; Provisional
Probab=50.84 E-value=1.8e+02 Score=25.71 Aligned_cols=163 Identities=12% Similarity=0.067 Sum_probs=93.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCE-EEEcCCc-cCcccc-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDK-IRLTGGE-PTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~-v~~tGGE-Pll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
+..+.|.+..+++.+.+.+.+- +.++-|+ .....+ +..++..+.+...+. |.+.-.=-..-+.+++..+.|++.|+
T Consensus 24 n~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~vp-V~lHlDH~~~~e~i~~Ai~~GftSVm 102 (286)
T PRK06801 24 NVLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHDIP-VVLNLDHGLHFEAVVRALRLGFSSVM 102 (286)
T ss_pred eeCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHhCCcEEE
Confidence 4568899999999998887543 3344333 333333 556776666555775 87765522233567777888999998
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC------------HhHHHHHHHHHhhCCCeeE
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN------------DDEICDFVELTRDRPINIR 157 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n------------~~~i~~i~~~~~~~g~~~~ 157 (298)
+.-...+.+ .+.+.+.+..+.++.+|+ .|+...=...|.. ..+.++..+|+.+.|++.-
T Consensus 103 ~D~S~l~~e--------eNi~~t~~v~~~a~~~gv-~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~L 173 (286)
T PRK06801 103 FDGSTLEYE--------ENVRQTREVVKMCHAVGV-SVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDAL 173 (286)
T ss_pred EcCCCCCHH--------HHHHHHHHHHHHHHHcCC-eEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEE
Confidence 843222111 235566667777778888 6644331111111 2346888888888899754
Q ss_pred EEeeecCCCCCCcccCCCCHHHHHHHHHHh
Q 022377 158 FIEFMPFDGNVWNVKKLVPYAEMLDTVVKK 187 (298)
Q Consensus 158 ~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~ 187 (298)
-+.+-+..+. +...+.+.++. ++.+.+.
T Consensus 174 AvaiGt~Hg~-y~~~~~l~~e~-l~~i~~~ 201 (286)
T PRK06801 174 AVAIGNAHGK-YKGEPKLDFAR-LAAIHQQ 201 (286)
T ss_pred EeccCCCCCC-CCCCCCCCHHH-HHHHHHh
Confidence 4433333322 22223345443 4444443
No 371
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=50.56 E-value=97 Score=28.31 Aligned_cols=74 Identities=12% Similarity=0.051 Sum_probs=43.3
Q ss_pred CCHHH-HHHHHHHHHhCCCCEEEEcCCccCcccc-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcC-CCeEEEe
Q 022377 15 LSLNE-ILRLAYLFVTSGVDKIRLTGGEPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG-LTSVNIS 91 (298)
Q Consensus 15 l~~e~-~~~~i~~~~~~~~~~v~~tGGEPll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~-~~~v~iS 91 (298)
++.++ ...+++.+.+.|+..|.+++|...-... ...+.+.+++..++. + + ++|....+..+++++.| .|.|.+.
T Consensus 245 ~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~p-v-~-~~G~~~~~~ae~~i~~G~~D~V~~g 321 (362)
T PRK10605 245 PNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHGV-I-I-GAGAYTAEKAETLIGKGLIDAVAFG 321 (362)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCCC-E-E-EeCCCCHHHHHHHHHcCCCCEEEEC
Confidence 57777 6888888888888888887653211111 234445555533442 3 3 33434456677777766 6766665
No 372
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=50.56 E-value=1.3e+02 Score=27.27 Aligned_cols=75 Identities=15% Similarity=0.037 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccC--ccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcC-CCeEEE
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPT--VRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG-LTSVNI 90 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPl--l~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~-~~~v~i 90 (298)
..+.|+...+++.+.+.|+..|.+++|-.- ...-..++++.+++..++. | +.+.+.. .+.++++.+.+ .|.|.+
T Consensus 237 ~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~ip-v-i~~G~i~-~~~a~~~l~~g~~D~V~~ 313 (338)
T cd02933 237 SDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFKGP-L-IAAGGYD-AESAEAALADGKADLVAF 313 (338)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcCCC-E-EEECCCC-HHHHHHHHHcCCCCEEEe
Confidence 467888888888888888888888755211 1122446666666644553 3 3344443 66677777655 787777
Q ss_pred e
Q 022377 91 S 91 (298)
Q Consensus 91 S 91 (298)
+
T Consensus 314 g 314 (338)
T cd02933 314 G 314 (338)
T ss_pred C
Confidence 6
No 373
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=50.53 E-value=79 Score=27.84 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEc----CCccCccccHH-HHHHHHhcc-CCCCcEEEEeCc
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLT----GGEPTVRKDIE-EACFHLSKL-KGLKTLAMTTNG 70 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~t----GGEPll~~~~~-~ii~~~~~~-~~~~~v~i~TNG 70 (298)
+.-.+|++++..-..+..+.|...++++ .|.|++.++.. ++++.+++. .+.. +.++|.+
T Consensus 22 PalP~TP~qIA~~a~~aa~AGAai~HlHvRp~dG~pt~d~~~yr~~l~rIr~~~~D~v-in~ttg~ 86 (298)
T COG3246 22 PALPVTPDQIASDAIAAAKAGAAILHLHVRPEDGRPTLDPEAYREVLERIRAAVGDAV-INLTTGE 86 (298)
T ss_pred CCCCCCHHHHHHHHHHHHhcCcceEEEEecCCCCCcccCHHHHHHHHHHHHccCCCeE-EEecccc
Confidence 4446899999988888888887766664 69999999966 999999985 3442 5555554
No 374
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=50.43 E-value=82 Score=25.35 Aligned_cols=59 Identities=20% Similarity=0.410 Sum_probs=40.7
Q ss_pred HhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEe
Q 022377 28 VTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 28 ~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iS 91 (298)
.+.|...|.|--..| .++.++++.++.. +-. +.+.-.|-...+.+..+.+.|+|.++++
T Consensus 97 ~~~g~d~I~lD~~~~---~~~~~~v~~l~~~-~~~-v~ie~SGGI~~~ni~~ya~~gvD~isvg 155 (169)
T PF01729_consen 97 LEAGADIIMLDNMSP---EDLKEAVEELREL-NPR-VKIEASGGITLENIAEYAKTGVDVISVG 155 (169)
T ss_dssp HHTT-SEEEEES-CH---HHHHHHHHHHHHH-TTT-SEEEEESSSSTTTHHHHHHTT-SEEEEC
T ss_pred HHhCCCEEEecCcCH---HHHHHHHHHHhhc-CCc-EEEEEECCCCHHHHHHHHhcCCCEEEcC
Confidence 346778888866655 4567888877764 443 6666666566788999999999988885
No 375
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=50.32 E-value=1.3e+02 Score=23.92 Aligned_cols=117 Identities=16% Similarity=0.103 Sum_probs=75.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--CCccCccccHHHHHHHHhccCCCCcEEEEeCcc-------c-hH-hhH
Q 022377 9 TPKPQLLSLNEILRLAYLFVTSGVDKIRLT--GGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGL-------T-LA-RKL 77 (298)
Q Consensus 9 ~~~~~~l~~e~~~~~i~~~~~~~~~~v~~t--GGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~-------l-l~-~~~ 77 (298)
..++.+-+.+.+.-.++.++++|+..+... -|+-- ..+++.+.. +++ +..+|-=. + ++ +.-
T Consensus 5 ~~pG~eNT~~tle~a~erA~elgik~~vVAS~tG~tA-----~k~lemveg--~lk-vVvVthh~Gf~e~g~~e~~~E~~ 76 (186)
T COG1751 5 EKPGKENTDETLEIAVERAKELGIKHIVVASSTGYTA-----LKALEMVEG--DLK-VVVVTHHAGFEEKGTQEMDEEVR 76 (186)
T ss_pred cCCcccchHHHHHHHHHHHHhcCcceEEEEecccHHH-----HHHHHhccc--Cce-EEEEEeecccccCCceecCHHHH
Confidence 345667788888889999999999887763 45422 244444433 354 55555422 2 22 345
Q ss_pred HHHHHcCCCeEEEe--cCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 022377 78 PKLKESGLTSVNIS--LDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMR 135 (298)
Q Consensus 78 ~~l~~~~~~~v~iS--ldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~ 135 (298)
+.|++.|.+.+.=| |.|.....-+++-|....+-+-++++ +...|+ +|.+.++++.
T Consensus 77 ~~L~erGa~v~~~sHalSg~eRsis~kfGG~~p~eiiAetLR-~fg~G~-KVcvEItiMA 134 (186)
T COG1751 77 KELKERGAKVLTQSHALSGVERSISRKFGGYSPLEIIAETLR-MFGQGV-KVCVEITIMA 134 (186)
T ss_pred HHHHHcCceeeeehhhhhcchhhhhhhcCCcchHHHHHHHHH-HhcCCc-EEEEEEEEEe
Confidence 67777777755544 44444445555555555777778888 667799 9999999986
No 376
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=50.25 E-value=68 Score=26.63 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHH-HHHHHhCCCCEEEEc-CCccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHH-----Hc
Q 022377 12 PQLLSLNEILRL-AYLFVTSGVDKIRLT-GGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLK-----ES 83 (298)
Q Consensus 12 ~~~l~~e~~~~~-i~~~~~~~~~~v~~t-GGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~-----~~ 83 (298)
++++++++..+. +.-++-+......+- +--|.+-|.+.+++..+++ .+.. +.+.|-|+.- -+.+.... +.
T Consensus 55 ng~~~F~eaL~~Rl~llqp~~~qv~~~v~~~k~~lT~Gi~eLv~~L~~-~~~~-v~liSGGF~~~i~~Va~~Lgi~~~n~ 132 (227)
T KOG1615|consen 55 NGEADFQEALAARLSLLQPLQVQVEQFVIKQKPTLTPGIRELVSRLHA-RGTQ-VYLISGGFRQLIEPVAEQLGIPKSNI 132 (227)
T ss_pred CCCCcHHHHHHHHHHHhcccHHHHHHHHhcCCCccCCCHHHHHHHHHH-cCCe-EEEEcCChHHHHHHHHHHhCCcHhhh
Confidence 456777765432 222222222222333 4579999999999999999 5995 9999999642 33222221 11
Q ss_pred CCCeEEEecCCCCHHhhh---hhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHh
Q 022377 84 GLTSVNISLDTLVPAKFE---FLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDD 140 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~---~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~ 140 (298)
....+-++-||- -..++ .+...+.-..+++- +++ +. +....+.+..|.|+=
T Consensus 133 yAN~l~fd~~Gk-~~gfd~~~ptsdsggKa~~i~~---lrk-~~-~~~~~~mvGDGatDl 186 (227)
T KOG1615|consen 133 YANELLFDKDGK-YLGFDTNEPTSDSGGKAEVIAL---LRK-NY-NYKTIVMVGDGATDL 186 (227)
T ss_pred hhheeeeccCCc-ccccccCCccccCCccHHHHHH---HHh-CC-ChheeEEecCCcccc
Confidence 234466676661 11111 22222333444444 444 67 777777777776653
No 377
>KOG0564 consensus 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=50.16 E-value=1.1e+02 Score=29.21 Aligned_cols=59 Identities=12% Similarity=0.110 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccc----------c-HHHHHHHHhccCCCCcEEEEeCccc
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRK----------D-IEEACFHLSKLKGLKTLAMTTNGLT 72 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~----------~-~~~ii~~~~~~~~~~~v~i~TNG~l 72 (298)
..|+.+.+.+.++++.++|++.|-=.-|+|=... . -.++|+++++..|=. +.|.--|+-
T Consensus 87 tn~~~~~Id~aLe~a~~~GirNILALRGDpP~g~d~~~~~e~gF~yA~DLVr~Irs~YGDy-F~IgVAgYP 156 (590)
T KOG0564|consen 87 TNMPKEMIDKALEQAKALGIRNILALRGDPPIGQDKWVEEEGGFRYAVDLVRYIRSKYGDY-FCIGVAGYP 156 (590)
T ss_pred cCccHHHHHHHHHHHHHhCchhhhhhcCCCCCCccccccccCCchhHHHHHHHHHHHhCCe-EEEEeccCC
Confidence 4588999999999999999988776666654431 2 349999999977774 888877763
No 378
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=49.93 E-value=1.4e+02 Score=26.33 Aligned_cols=101 Identities=14% Similarity=0.198 Sum_probs=56.4
Q ss_pred CEEEEcCCccCcccc--HHHHHHHHhccCCCCcEEEEeCcc-chHhhHHHHHHcCCC-eEEEecCCCCH--HhhhhhcC-
Q 022377 33 DKIRLTGGEPTVRKD--IEEACFHLSKLKGLKTLAMTTNGL-TLARKLPKLKESGLT-SVNISLDTLVP--AKFEFLTR- 105 (298)
Q Consensus 33 ~~v~~tGGEPll~~~--~~~ii~~~~~~~~~~~v~i~TNG~-ll~~~~~~l~~~~~~-~v~iSldg~~~--~~~~~ir~- 105 (298)
..+.+-+|.-+|.-. .-.++.++.+..+.. |.=+|... .....-+++.+.|+. .|.|-+..... +.+|+|..
T Consensus 66 ~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~-V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDrIvSv 144 (283)
T COG2230 66 EKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVT-VVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDRIVSV 144 (283)
T ss_pred HhcCCCCCCEEEEeCCChhHHHHHHHHHcCCE-EEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccceeeeh
Confidence 345566777777654 445666665545765 43334433 233344557777876 67776665432 34666653
Q ss_pred -------CCcHHHHHHHHHHHHHcCCCCEEEEEEEec
Q 022377 106 -------RKGHEKVMESINAAIEVGYNPVKVNCVVMR 135 (298)
Q Consensus 106 -------~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~ 135 (298)
...++.-++.+..+..-|- .+.+.++..+
T Consensus 145 gmfEhvg~~~~~~ff~~~~~~L~~~G-~~llh~I~~~ 180 (283)
T COG2230 145 GMFEHVGKENYDDFFKKVYALLKPGG-RMLLHSITGP 180 (283)
T ss_pred hhHHHhCcccHHHHHHHHHhhcCCCc-eEEEEEecCC
Confidence 2335566666666665554 4555554444
No 379
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=49.17 E-value=1.8e+02 Score=25.44 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcC--------CccCc-cccHH-HHHHHHhccCCCCcEEEEeCccc--hHhhHHHHHHc
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTG--------GEPTV-RKDIE-EACFHLSKLKGLKTLAMTTNGLT--LARKLPKLKES 83 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tG--------GEPll-~~~~~-~ii~~~~~~~~~~~v~i~TNG~l--l~~~~~~l~~~ 83 (298)
+.+++.+..+.+.+.|...|.+.- |..++ .+++. ++++.+++..++. +.+--+... ..+.++.+.++
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~P-v~vKl~~~~~~~~~~a~~~~~~ 178 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVP-VIVKLTPNVTDIVEIARAAEEA 178 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCC-EEEEeCCCchhHHHHHHHHHHc
Confidence 578888888888888877776632 33333 45544 8888888743554 554333222 23456677788
Q ss_pred CCCeEEEe
Q 022377 84 GLTSVNIS 91 (298)
Q Consensus 84 ~~~~v~iS 91 (298)
|++.|.++
T Consensus 179 G~d~i~~~ 186 (296)
T cd04740 179 GADGLTLI 186 (296)
T ss_pred CCCEEEEE
Confidence 88877663
No 380
>PRK13753 dihydropteroate synthase; Provisional
Probab=49.11 E-value=1.9e+02 Score=25.48 Aligned_cols=83 Identities=12% Similarity=0.113 Sum_probs=56.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC--CccCccc-----cH---HHHHHHHhccCCCCcEEEEeCccchHhh
Q 022377 7 DLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTG--GEPTVRK-----DI---EEACFHLSKLKGLKTLAMTTNGLTLARK 76 (298)
Q Consensus 7 ~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GEPll~~-----~~---~~ii~~~~~~~~~~~v~i~TNG~ll~~~ 76 (298)
+|-..+..++.+.+.+-+.++.+.|..-|.+.| ..|-..+ ++ ..+++.+++. +.. ++|.|- -.+.
T Consensus 14 SFsDGg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~-~~~-ISIDT~---~~~v 88 (279)
T PRK13753 14 SFFDESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQ-MHR-VSIDSF---QPET 88 (279)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhC-CCc-EEEECC---CHHH
Confidence 455666778999999888888888977666644 3344332 23 3777777764 664 888763 3456
Q ss_pred HHHHHHcCCCeEEEecCCC
Q 022377 77 LPKLKESGLTSVNISLDTL 95 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~ 95 (298)
++...++|.+ +--++.|.
T Consensus 89 a~~al~aGad-iINDVsg~ 106 (279)
T PRK13753 89 QRYALKRGVG-YLNDIQGF 106 (279)
T ss_pred HHHHHHcCCC-EEEeCCCC
Confidence 7777788988 66677764
No 381
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=48.34 E-value=1.6e+02 Score=24.54 Aligned_cols=76 Identities=12% Similarity=0.062 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 90 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~i 90 (298)
..+++|+..........+|.+.|.+--|.=...+--.++++.+++..++. + +.-.|....+.++.+.++|.|.|.+
T Consensus 129 p~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~~P-v-~vGGGIrs~e~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 129 PYNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKASGIP-L-IVGGGIRSPEIAYEIVLAGADAIVT 204 (205)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhCCC-E-EEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 44899999988888888898888874321112222255666665544553 4 5577766678899998888887765
No 382
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=48.18 E-value=1.9e+02 Score=25.25 Aligned_cols=64 Identities=22% Similarity=0.324 Sum_probs=34.4
Q ss_pred HHHHHHHHhccCCCCcEEE-EeCccchHhh----HHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc
Q 022377 48 IEEACFHLSKLKGLKTLAM-TTNGLTLARK----LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV 122 (298)
Q Consensus 48 ~~~ii~~~~~~~~~~~v~i-~TNG~ll~~~----~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~ 122 (298)
+.++++.+.+. |...+.+ .|.|...+.. +..+++. +..+.|++++.+ ++-..+.|.-...++
T Consensus 151 ~~~~~~~~~~~-Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~-~~~~~i~~H~Hn-----------d~GlA~AN~laA~~a 217 (274)
T cd07938 151 VAEVAERLLDL-GCDEISLGDTIGVATPAQVRRLLEAVLER-FPDEKLALHFHD-----------TRGQALANILAALEA 217 (274)
T ss_pred HHHHHHHHHHc-CCCEEEECCCCCccCHHHHHHHHHHHHHH-CCCCeEEEEECC-----------CCChHHHHHHHHHHh
Confidence 34777776663 5543443 4777766543 3334332 323566666632 123555666666677
Q ss_pred CC
Q 022377 123 GY 124 (298)
Q Consensus 123 g~ 124 (298)
|.
T Consensus 218 Ga 219 (274)
T cd07938 218 GV 219 (274)
T ss_pred CC
Confidence 77
No 383
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=48.12 E-value=1.1e+02 Score=26.33 Aligned_cols=57 Identities=26% Similarity=0.309 Sum_probs=40.2
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL 73 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll 73 (298)
...+++.+.+.+....|-..+.++.|.|+++.-...+++.+.+. ++. +.+...-+.+
T Consensus 76 ~~~~~~~~~i~~~~~~g~~Vvvl~~GDP~~ys~~~~l~~~l~~~-~~~-veiiPGISS~ 132 (263)
T PLN02625 76 RTQEEIHELLLSFAEAGKTVVRLKGGDPLVFGRGGEEMDALRKN-GIP-VTVVPGITAA 132 (263)
T ss_pred cCHHHHHHHHHHHHHCCCeEEEEcCCCchhhhhHHHHHHHHHHC-CCC-EEEECCccHH
Confidence 45666666665554556455667899999998888888888874 774 8887654444
No 384
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=48.09 E-value=2.1e+02 Score=25.77 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=57.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcC-CCeEE
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESG-LTSVN 89 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~-~~~v~ 89 (298)
+.-.+.++..++++.+.++++..+- ||+-..++ +-++.+++..++. |....+.. .+.+.++.+.+ ++.|+
T Consensus 197 N~~~~~~~a~~~~~~l~~~~i~~iE----qP~~~~~~-~~~~~l~~~~~ip---i~~dE~~~~~~~~~~~i~~~~~d~v~ 268 (357)
T cd03316 197 NGRWDLAEAIRLARALEEYDLFWFE----EPVPPDDL-EGLARLRQATSVP---IAAGENLYTRWEFRDLLEAGAVDIIQ 268 (357)
T ss_pred CCCCCHHHHHHHHHHhCccCCCeEc----CCCCccCH-HHHHHHHHhCCCC---EEeccccccHHHHHHHHHhCCCCEEe
Confidence 3446777777777777666654443 57654433 3344455433443 33444333 34455555433 55555
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC 131 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~ 131 (298)
+.+ ...+++..+++.++.+.++|+ ++.+.+
T Consensus 269 ~k~-----------~~~GGi~~~~~i~~~a~~~g~-~~~~~~ 298 (357)
T cd03316 269 PDV-----------TKVGGITEAKKIAALAEAHGV-RVAPHG 298 (357)
T ss_pred cCc-----------cccCCHHHHHHHHHHHHHcCC-eEeccC
Confidence 442 123568889999999999998 654443
No 385
>TIGR01469 cobA_cysG_Cterm uroporphyrin-III C-methyltransferase. This model represents enzymes, or enzyme domains, with uroporphyrin-III C-methyltransferase activity. This enzyme catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). Cobalamin contains cobalt while siroheme contains iron. Siroheme is a cofactor for nitrite and sulfite reductases and therefore plays a role in cysteine biosynthesis; many members of this family are CysG, siroheme synthase, with an additional N-terminal domain and with additional oxidation and iron insertion activities.
Probab=48.08 E-value=1.3e+02 Score=25.15 Aligned_cols=57 Identities=25% Similarity=0.300 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL 73 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll 73 (298)
...+++...+.+....|-..+.++.|+|+++.-...+++.+.+. ++. +.+...-+.+
T Consensus 61 ~~~~~~~~~i~~~~~~g~~V~~l~~GDP~~~~~~~~l~~~~~~~-~~~-v~viPGiSs~ 117 (236)
T TIGR01469 61 KKQEEINRLLVELAREGKKVVRLKGGDPFVFGRGGEEAEALAEA-GIP-FEVVPGVTSA 117 (236)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeCcCcccccCHHHHHHHHHHC-CCC-EEEECCccHH
Confidence 45666766554444456455567899999998888999988874 774 8776555444
No 386
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=48.00 E-value=25 Score=26.84 Aligned_cols=56 Identities=23% Similarity=0.310 Sum_probs=41.0
Q ss_pred CCccCccccHHHHHHHHhccCCCCcEEEEeCccch---HhhHHHHHHcCCCeEEEecCCCC
Q 022377 39 GGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL---ARKLPKLKESGLTSVNISLDTLV 96 (298)
Q Consensus 39 GGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll---~~~~~~l~~~~~~~v~iSldg~~ 96 (298)
|=||..++|+..++..+++. |+. ..+.+|+... .+.++.+.......+..|+.+.+
T Consensus 40 g~e~~fY~Di~rIL~dLk~~-GVt-l~~ASRt~ap~iA~q~L~~fkvk~~Gvlkps~e~ft 98 (144)
T KOG4549|consen 40 GEEMIFYDDIRRILVDLKKL-GVT-LIHASRTMAPQIASQGLETFKVKQTGVLKPSLEEFT 98 (144)
T ss_pred cceeeeccchhHHHHHHHhc-CcE-EEEecCCCCHHHHHHHHHHhccCcccccchhhhcCc
Confidence 56799999999999999995 995 8888998755 24566665554555666666654
No 387
>PLN02645 phosphoglycolate phosphatase
Probab=47.90 E-value=51 Score=29.27 Aligned_cols=71 Identities=11% Similarity=0.090 Sum_probs=47.4
Q ss_pred HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCC
Q 022377 74 ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRP 153 (298)
Q Consensus 74 ~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g 153 (298)
.+.+..+.+ ..+.+-+.+||. . .++...++.+.++|+.|++.|+ ++.+-+ +-......++++.+.++|
T Consensus 18 ~~~~~~~~~-~~~~~~~D~DGt---l---~~~~~~~~ga~e~l~~lr~~g~-~~~~~T----N~~~~~~~~~~~~l~~lG 85 (311)
T PLN02645 18 LENADELID-SVETFIFDCDGV---I---WKGDKLIEGVPETLDMLRSMGK-KLVFVT----NNSTKSRAQYGKKFESLG 85 (311)
T ss_pred HHHHHHHHH-hCCEEEEeCcCC---e---EeCCccCcCHHHHHHHHHHCCC-EEEEEe----CCCCCCHHHHHHHHHHCC
Confidence 345666766 478899999995 2 2334457888999999999998 654333 223344555666667788
Q ss_pred Cee
Q 022377 154 INI 156 (298)
Q Consensus 154 ~~~ 156 (298)
+.+
T Consensus 86 i~~ 88 (311)
T PLN02645 86 LNV 88 (311)
T ss_pred CCC
Confidence 754
No 388
>PRK09389 (R)-citramalate synthase; Provisional
Probab=47.86 E-value=2.6e+02 Score=26.77 Aligned_cols=15 Identities=13% Similarity=0.430 Sum_probs=8.5
Q ss_pred HcCCCeEEEecCCCC
Q 022377 82 ESGLTSVNISLDTLV 96 (298)
Q Consensus 82 ~~~~~~v~iSldg~~ 96 (298)
.+|.+.|..|+.|..
T Consensus 209 ~aGa~~Vd~Ti~GiG 223 (488)
T PRK09389 209 AAGADQVHVTINGIG 223 (488)
T ss_pred HcCCCEEEEEccccc
Confidence 345666666666654
No 389
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=47.75 E-value=1.9e+02 Score=25.28 Aligned_cols=121 Identities=11% Similarity=0.204 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhCCCCEEEEcC---CccCc-ccc-HHHHHHHHhccCCCCcEEE-EeCccchHhhH----HHHHHcCCCe
Q 022377 18 NEILRLAYLFVTSGVDKIRLTG---GEPTV-RKD-IEEACFHLSKLKGLKTLAM-TTNGLTLARKL----PKLKESGLTS 87 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~~v~~tG---GEPll-~~~-~~~ii~~~~~~~~~~~v~i-~TNG~ll~~~~----~~l~~~~~~~ 87 (298)
+++..+++.+++.|. .|.++- |.|+- .++ +.++++.+.+. |...+.+ .|.|...+..+ ..+++ ....
T Consensus 115 ~~~~~~i~~a~~~G~-~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~-G~~~i~l~DT~G~~~P~~v~~l~~~l~~-~~~~ 191 (280)
T cd07945 115 ADIREVIEYAIKNGI-EVNIYLEDWSNGMRDSPDYVFQLVDFLSDL-PIKRIMLPDTLGILSPFETYTYISDMVK-RYPN 191 (280)
T ss_pred HHHHHHHHHHHhCCC-EEEEEEEeCCCCCcCCHHHHHHHHHHHHHc-CCCEEEecCCCCCCCHHHHHHHHHHHHh-hCCC
Confidence 334556666666773 455542 55642 345 44888888774 7665554 59998876543 44443 2334
Q ss_pred EEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC----HhHHHHHHHHHh-hCCCe
Q 022377 88 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN----DDEICDFVELTR-DRPIN 155 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n----~~~i~~i~~~~~-~~g~~ 155 (298)
+.|+++..+ ++-..+.|.-...++|. . .+.+++.. .- --.+++++..+. ..|+.
T Consensus 192 ~~i~~H~Hn-----------d~Gla~AN~laA~~aGa-~-~vd~s~~G-lGe~aGN~~~E~~v~~L~~~~g~~ 250 (280)
T cd07945 192 LHFDFHAHN-----------DYDLAVANVLAAVKAGI-K-GLHTTVNG-LGERAGNAPLASVIAVLKDKLKVK 250 (280)
T ss_pred CeEEEEeCC-----------CCCHHHHHHHHHHHhCC-C-EEEEeccc-ccccccCccHHHHHHHHHHhcCCC
Confidence 667776632 23466777777778888 3 34554442 21 134677777664 35653
No 390
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=47.24 E-value=1.8e+02 Score=24.88 Aligned_cols=79 Identities=16% Similarity=0.201 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchH----hhHHHHHHcCCCeEEEe
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA----RKLPKLKESGLTSVNIS 91 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~----~~~~~l~~~~~~~v~iS 91 (298)
-.|-+..+++...+.+ ..|.|.||.|-...... +.+++..++. +.-..+|+.-+ +.++.+.+++.+.|-|.
T Consensus 90 G~dl~~~ll~~~~~~~-~~v~llG~~~~v~~~a~---~~l~~~y~l~-i~g~~~Gyf~~~e~~~i~~~I~~s~~dil~Vg 164 (243)
T PRK03692 90 GADLWEALMARAGKEG-TPVFLVGGKPEVLAQTE---AKLRTQWNVN-IVGSQDGYFTPEQRQALFERIHASGAKIVTVA 164 (243)
T ss_pred hHHHHHHHHHHHHhcC-CeEEEECCCHHHHHHHH---HHHHHHhCCE-EEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEE
Confidence 4566667787776666 78999999887544444 4443323664 55457898742 24788888999999999
Q ss_pred cCCCCHHh
Q 022377 92 LDTLVPAK 99 (298)
Q Consensus 92 ldg~~~~~ 99 (298)
+-.+.-|.
T Consensus 165 lG~PkQE~ 172 (243)
T PRK03692 165 MGSPKQEI 172 (243)
T ss_pred CCCcHHHH
Confidence 98875553
No 391
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=46.98 E-value=1.8e+02 Score=26.64 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=14.8
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 022377 11 KPQLLSLNEILRLAYLFVT 29 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~ 29 (298)
...+||.+||.++++.+.+
T Consensus 135 ~pr~mt~~eI~~ii~~f~~ 153 (363)
T COG1902 135 TPRELTEEEIEEVIEDFAR 153 (363)
T ss_pred CCccCCHHHHHHHHHHHHH
Confidence 4678999999999876544
No 392
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=46.92 E-value=44 Score=28.59 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=34.5
Q ss_pred CCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCcc--chHhhHHHHHHcCCC
Q 022377 32 VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGL--TLARKLPKLKESGLT 86 (298)
Q Consensus 32 ~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~--ll~~~~~~l~~~~~~ 86 (298)
+..+.+.|++|+ +.-.+.++.+++. |.. +.+.||.+ .......++...|++
T Consensus 8 ~DGtl~~~~~~i--~~a~~~l~~l~~~-g~~-~~~~Tnn~~r~~~~~~~~l~~~g~~ 60 (249)
T TIGR01457 8 LDGTMYKGKERI--PEAETFVHELQKR-DIP-YLFVTNNSTRTPESVAEMLASFDIP 60 (249)
T ss_pred CCCceEcCCeeC--cCHHHHHHHHHHC-CCe-EEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 345566778775 4677888888884 885 88999844 234556667666654
No 393
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=46.89 E-value=1.9e+02 Score=24.82 Aligned_cols=42 Identities=19% Similarity=0.137 Sum_probs=27.6
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccCc-cc-----cHHHHHHHHhccCCCC
Q 022377 20 ILRLAYLFVTSGVDKIRLTGGEPTV-RK-----DIEEACFHLSKLKGLK 62 (298)
Q Consensus 20 ~~~~i~~~~~~~~~~v~~tGGEPll-~~-----~~~~ii~~~~~~~~~~ 62 (298)
+.+.++.+.+.|...|-+.++.|-. .+ ++.++-+.+.+ .|+.
T Consensus 15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~-~gl~ 62 (275)
T PRK09856 15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQT-YQMP 62 (275)
T ss_pred HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHH-cCCe
Confidence 4556777788999999998776632 12 23455555555 5885
No 394
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=46.87 E-value=1.6e+02 Score=25.65 Aligned_cols=95 Identities=16% Similarity=0.231 Sum_probs=54.6
Q ss_pred EEEEeCccch-H---hhHHHHHHcCCCeEEEecCCCCH---------HhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 64 LAMTTNGLTL-A---RKLPKLKESGLTSVNISLDTLVP---------AKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 64 v~i~TNG~ll-~---~~~~~l~~~~~~~v~iSldg~~~---------~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
+.-.|.|.-- + +.+..+.+.|.|.+.+-+-.-|| ...+.+.++-+.+.+++.++.+++. .+ ++.+
T Consensus 18 i~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~-p~vl 96 (263)
T CHL00200 18 IPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKA-PIVI 96 (263)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCC-CEEE
Confidence 6666777632 1 34566777777777777655444 2333445555677778877777743 33 3321
Q ss_pred EEEEecCCCH--h-HHHHHHHHHhhCCCeeEEEeeec
Q 022377 130 NCVVMRGFND--D-EICDFVELTRDRPINIRFIEFMP 163 (298)
Q Consensus 130 ~~vi~~~~n~--~-~i~~i~~~~~~~g~~~~~~~~~p 163 (298)
+++ .|. . .++++++.+.+.|++--.+.-.|
T Consensus 97 -m~Y---~N~i~~~G~e~F~~~~~~aGvdgviipDLP 129 (263)
T CHL00200 97 -FTY---YNPVLHYGINKFIKKISQAGVKGLIIPDLP 129 (263)
T ss_pred -Eec---ccHHHHhCHHHHHHHHHHcCCeEEEecCCC
Confidence 111 332 3 47777888887777544444334
No 395
>TIGR02434 CobF precorrin-6A synthase (deacetylating). This model identifies CobF in High GC gram positive, alphaproteobacteria and pseudomonas-related species.
Probab=46.84 E-value=61 Score=27.92 Aligned_cols=52 Identities=10% Similarity=-0.056 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc--CCCCcEEEEeCcc
Q 022377 19 EILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL--KGLKTLAMTTNGL 71 (298)
Q Consensus 19 ~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~--~~~~~v~i~TNG~ 71 (298)
++.+.+.+..+.|-..+.++.|+|+++.-+..+++.+.+. .++. +.+...=+
T Consensus 90 ~~a~~i~~~~~~g~~Vv~L~~GDP~~yst~~~l~~~l~~~~~~~~~-vevVPGIS 143 (249)
T TIGR02434 90 IWAQAIAEELGDDGTGAFLVWGDPSLYDSTLRILERLRALGGVPFD-YEVIPGIT 143 (249)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCchHhhhHHHHHHHHHHhcCCCCC-EEEECCHH
Confidence 3455566655567677888999999998877777777653 2454 76654433
No 396
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=46.71 E-value=65 Score=28.53 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEc-------CCccCc--------cccHHHHHHHHhccCCCCcEE
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLT-------GGEPTV--------RKDIEEACFHLSKLKGLKTLA 65 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~t-------GGEPll--------~~~~~~ii~~~~~~~~~~~v~ 65 (298)
++..++.+.++++|+.+..++...+.+. -|+|-+ ..++.+|+++++++ |+. +.
T Consensus 10 R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT~~ei~ei~~yA~~~-gI~-vI 77 (301)
T cd06565 10 RNAVPKVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYTKEEIREIDDYAAEL-GIE-VI 77 (301)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcCHHHHHHHHHHHHHc-CCE-EE
Confidence 3488999999999999999887655542 144444 34588999999995 874 43
No 397
>PRK15452 putative protease; Provisional
Probab=46.52 E-value=1.5e+02 Score=27.93 Aligned_cols=77 Identities=13% Similarity=0.001 Sum_probs=48.6
Q ss_pred hhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecC-CCHhHHHHHHHHHhhCC
Q 022377 75 RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRG-FNDDEICDFVELTRDRP 153 (298)
Q Consensus 75 ~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~-~n~~~i~~i~~~~~~~g 153 (298)
+.++...++|.|.|-+..+.++.... ...-+++.+.++++.+++.|. ++.+.+-..+. ...+.+.+.++.+.+.|
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~---~~~f~~edl~eav~~ah~~g~-kvyvt~n~i~~e~el~~~~~~l~~l~~~g 89 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVR---NNEFNHENLALGINEAHALGK-KFYVVVNIAPHNAKLKTFIRDLEPVIAMK 89 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhh---ccCCCHHHHHHHHHHHHHcCC-EEEEEecCcCCHHHHHHHHHHHHHHHhCC
Confidence 45666678899999998887643211 112246788889999999998 77665544431 11234555555556666
Q ss_pred Ce
Q 022377 154 IN 155 (298)
Q Consensus 154 ~~ 155 (298)
++
T Consensus 90 vD 91 (443)
T PRK15452 90 PD 91 (443)
T ss_pred CC
Confidence 64
No 398
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=46.22 E-value=1.2e+02 Score=26.25 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=31.7
Q ss_pred HHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEe
Q 022377 22 RLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 22 ~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iS 91 (298)
+.++.+.++|+..|-=+||.|.....+..+-+.+....+. +-|.-.| +..+.+..+...|+..+..|
T Consensus 132 ~al~~l~~lG~~rILTSGg~~~a~~g~~~L~~lv~~a~~~--~Im~GgG-V~~~Nv~~l~~tG~~~~H~s 198 (248)
T PRK11572 132 NALKQLADLGVARILTSGQQQDAEQGLSLIMELIAASDGP--IIMAGAG-VRLSNLHKFLDAGVREVHSS 198 (248)
T ss_pred HHHHHHHHcCCCEEECCCCCCCHHHHHHHHHHHHHhcCCC--EEEeCCC-CCHHHHHHHHHcCCCEEeeC
Confidence 4455555666666655666666544333333332222121 3232333 33444444555666666655
No 399
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=46.22 E-value=72 Score=30.03 Aligned_cols=52 Identities=19% Similarity=0.327 Sum_probs=38.7
Q ss_pred cHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEEe
Q 022377 108 GHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFIE 160 (298)
Q Consensus 108 ~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~~ 160 (298)
+|....+-|+.++++|+ ++.+-+--.+.-++.|+..+.+++.++|+++...+
T Consensus 354 G~aNL~~Hi~Nikkfgv-p~VVAIN~F~tDt~~Ei~~i~~~~~~~gv~~~ls~ 405 (554)
T COG2759 354 GFANLLKHIENIKKFGV-PVVVAINKFPTDTEAEIAAIEKLCEEHGVEVALSE 405 (554)
T ss_pred HHHHHHHHHHHHHHcCC-CeEEEeccCCCCCHHHHHHHHHHHHHcCCceeehh
Confidence 36667777778888999 77665543433578899999999999998766543
No 400
>PRK08185 hypothetical protein; Provisional
Probab=46.14 E-value=2.1e+02 Score=25.21 Aligned_cols=137 Identities=9% Similarity=-0.003 Sum_probs=85.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEE-Ec-CCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIR-LT-GGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 90 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~-~t-GGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~i 90 (298)
+-.+.|.+..+++.+.+.+.+-|. ++ |.-......+..++..+.+...+. |.+.-.=-.-.+.+++..+.|++.|.+
T Consensus 19 N~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~vP-V~lHLDHg~~~e~i~~ai~~Gf~SVM~ 97 (283)
T PRK08185 19 NVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSPVP-FVIHLDHGATIEDVMRAIRCGFTSVMI 97 (283)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 457889999999999998755333 33 222323233566666555545775 777654222235677888889998887
Q ss_pred ecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC-----------HhHHHHHHHHHhhCCCeeEEE
Q 022377 91 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN-----------DDEICDFVELTRDRPINIRFI 159 (298)
Q Consensus 91 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n-----------~~~i~~i~~~~~~~g~~~~~~ 159 (298)
.=...+.+. +.+.+.+.++.++.+|+ .++...=...+.. ..+.++..+|+...|++.-.+
T Consensus 98 D~S~l~~ee--------Ni~~t~~vv~~a~~~gv-~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAv 168 (283)
T PRK08185 98 DGSLLPYEE--------NVALTKEVVELAHKVGV-SVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAV 168 (283)
T ss_pred eCCCCCHHH--------HHHHHHHHHHHHHHcCC-eEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEe
Confidence 644433222 24566677777788888 7765542222211 235778888998889875444
No 401
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=46.12 E-value=1.7e+02 Score=26.83 Aligned_cols=84 Identities=20% Similarity=0.183 Sum_probs=53.3
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcC--Ccc-Ccccc-----HHHHHHHHhccCCCCcEEEEeCccc-hHh---hHH
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTG--GEP-TVRKD-----IEEACFHLSKLKGLKTLAMTTNGLT-LAR---KLP 78 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GEP-ll~~~-----~~~ii~~~~~~~~~~~v~i~TNG~l-l~~---~~~ 78 (298)
++.-++.+++.++++++...|+..|..-| ||+ ++..+ +.+.++.+.+..|-. ..+..|.+- .++ ..+
T Consensus 139 p~~gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~-~~y~~nit~~~~e~i~~a~ 217 (367)
T cd08205 139 PSIGLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRK-TLYAPNITGDPDELRRRAD 217 (367)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCc-ceEEEEcCCCHHHHHHHHH
Confidence 44589999999999999999988877654 775 55543 235555555322332 223333322 233 456
Q ss_pred HHHHcCCCeEEEecCCC
Q 022377 79 KLKESGLTSVNISLDTL 95 (298)
Q Consensus 79 ~l~~~~~~~v~iSldg~ 95 (298)
...++|.+.+.+..-..
T Consensus 218 ~a~~~Gad~vmv~~~~~ 234 (367)
T cd08205 218 RAVEAGANALLINPNLV 234 (367)
T ss_pred HHHHcCCCEEEEecccc
Confidence 66778988887776543
No 402
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=45.94 E-value=89 Score=27.98 Aligned_cols=71 Identities=13% Similarity=0.175 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCCEEEEcCCc--cCccc-cHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHH-cCCCeEEEe
Q 022377 18 NEILRLAYLFVTSGVDKIRLTGGE--PTVRK-DIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKE-SGLTSVNIS 91 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~~v~~tGGE--Pll~~-~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~-~~~~~v~iS 91 (298)
+++..+++.+.+.|+..|.++|.. +.... --.++++.+++..++ -+..||-.. .+.++++.+ .|.+.|.|.
T Consensus 149 ~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~i---PVI~nGgI~s~~da~~~l~~~gadgVmiG 224 (321)
T PRK10415 149 RNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSI---PVIANGDITDPLKARAVLDYTGADALMIG 224 (321)
T ss_pred chHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCC---cEEEeCCCCCHHHHHHHHhccCCCEEEEC
Confidence 456667777778888889888753 33222 124677777664344 466677555 456666665 688988887
No 403
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=45.78 E-value=1.3e+02 Score=27.36 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=51.6
Q ss_pred hhHHHHHHcCCCeEEEecCCCCHHhhhhhcC-CCcHHHHHHHHHHHHHcCCCCEE--EEEEEecCCCHhHHHHHHHHHhh
Q 022377 75 RKLPKLKESGLTSVNISLDTLVPAKFEFLTR-RKGHEKVMESINAAIEVGYNPVK--VNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 75 ~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~-~~~~~~v~~~i~~l~~~g~~~v~--i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
+.+....++|.|.|-++...+. -+.+. .-+.+...+.++.++++|. ++. +|+.++. ...+.+.+.++.+.+
T Consensus 17 ~~l~~ai~~GADaVY~G~~~~~----~R~~a~nfs~~~l~e~i~~ah~~gk-k~~V~~N~~~~~-~~~~~~~~~l~~l~e 90 (347)
T COG0826 17 EDLKAAIAAGADAVYIGEKEFG----LRRRALNFSVEDLAEAVELAHSAGK-KVYVAVNTLLHN-DELETLERYLDRLVE 90 (347)
T ss_pred HHHHHHHHcCCCEEEeCCcccc----cccccccCCHHHHHHHHHHHHHcCC-eEEEEecccccc-chhhHHHHHHHHHHH
Confidence 3456666778999999976332 12222 1246789999999999998 554 4555554 356667888888888
Q ss_pred CCCe
Q 022377 152 RPIN 155 (298)
Q Consensus 152 ~g~~ 155 (298)
.|++
T Consensus 91 ~GvD 94 (347)
T COG0826 91 LGVD 94 (347)
T ss_pred cCCC
Confidence 8885
No 404
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=45.74 E-value=1.4e+02 Score=23.03 Aligned_cols=46 Identities=13% Similarity=0.064 Sum_probs=23.1
Q ss_pred HHHHHHHHhccCCCCcEEEE----eCccchHhhHHHHHHcCCCeEEEecCC
Q 022377 48 IEEACFHLSKLKGLKTLAMT----TNGLTLARKLPKLKESGLTSVNISLDT 94 (298)
Q Consensus 48 ~~~ii~~~~~~~~~~~v~i~----TNG~ll~~~~~~l~~~~~~~v~iSldg 94 (298)
..++++.+.+. +...+.++ ++...+.+.++.|.+.+...+.|=+=|
T Consensus 43 ~e~i~~~a~~~-~~d~V~lS~~~~~~~~~~~~~~~~L~~~~~~~~~i~vGG 92 (137)
T PRK02261 43 QEEFIDAAIET-DADAILVSSLYGHGEIDCRGLREKCIEAGLGDILLYVGG 92 (137)
T ss_pred HHHHHHHHHHc-CCCEEEEcCccccCHHHHHHHHHHHHhcCCCCCeEEEEC
Confidence 34666666653 33223333 122223466788888766445444434
No 405
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=45.70 E-value=1.9e+02 Score=27.67 Aligned_cols=108 Identities=22% Similarity=0.337 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHHHHHhC-----CCCEEEEcCCcc-CccccHHHHHHHHhccCCCCcEEE--Ee-Cccch----------
Q 022377 13 QLLSLNEILRLAYLFVTS-----GVDKIRLTGGEP-TVRKDIEEACFHLSKLKGLKTLAM--TT-NGLTL---------- 73 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~-----~~~~v~~tGGEP-ll~~~~~~ii~~~~~~~~~~~v~i--~T-NG~ll---------- 73 (298)
..++.+++.++++.+.+. ++..+++..|-| ++.++. ++.+++. |+.+++| .| |-..+
T Consensus 230 t~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~---L~~Lk~~-Gv~RISIGvQS~~d~vLk~igR~ht~e 305 (488)
T PRK08207 230 TSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEK---LEVLKKY-GVDRISINPQTMNDETLKAIGRHHTVE 305 (488)
T ss_pred cCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHH---HHHHHhc-CCCeEEEcCCcCCHHHHHHhCCCCCHH
Confidence 347899999999988653 234667777776 344444 4445553 5544443 33 21111
Q ss_pred --HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEE
Q 022377 74 --ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCV 132 (298)
Q Consensus 74 --~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~v 132 (298)
.+.++.+.++|++.|++++=-.- .+.+.+.+.+.++.+.+.+...+.+...
T Consensus 306 ~v~~ai~~ar~~Gf~~In~DLI~GL--------PgEt~ed~~~tl~~l~~L~pd~isv~~L 358 (488)
T PRK08207 306 DIIEKFHLAREMGFDNINMDLIIGL--------PGEGLEEVKHTLEEIEKLNPESLTVHTL 358 (488)
T ss_pred HHHHHHHHHHhCCCCeEEEEEEeCC--------CCCCHHHHHHHHHHHHhcCcCEEEEEec
Confidence 12456677778765555432211 1245788899999999998866776653
No 406
>PLN02591 tryptophan synthase
Probab=45.50 E-value=2e+02 Score=24.80 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=55.3
Q ss_pred EEEEeCccch-H---hhHHHHHHcCCCeEEEecCCCCH---------HhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEE
Q 022377 64 LAMTTNGLTL-A---RKLPKLKESGLTSVNISLDTLVP---------AKFEFLTRRKGHEKVMESINAAIEV-GYNPVKV 129 (298)
Q Consensus 64 v~i~TNG~ll-~---~~~~~l~~~~~~~v~iSldg~~~---------~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i 129 (298)
+...|.|.-- + +.++.+.+.|.|.+.+-+-.-+| ..++.+..+-+.+++++.++.+++. .+ ++.+
T Consensus 5 i~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~-p~il 83 (250)
T PLN02591 5 IPYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSC-PIVL 83 (250)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCC-CEEE
Confidence 5566777633 2 34667778888888887766554 2444555656688888888888753 33 3322
Q ss_pred EEEEecCCCH--h-HHHHHHHHHhhCCCe
Q 022377 130 NCVVMRGFND--D-EICDFVELTRDRPIN 155 (298)
Q Consensus 130 ~~vi~~~~n~--~-~i~~i~~~~~~~g~~ 155 (298)
+++ .|. . .++++++.+++.|++
T Consensus 84 -m~Y---~N~i~~~G~~~F~~~~~~aGv~ 108 (250)
T PLN02591 84 -FTY---YNPILKRGIDKFMATIKEAGVH 108 (250)
T ss_pred -Eec---ccHHHHhHHHHHHHHHHHcCCC
Confidence 221 342 3 578888888888874
No 407
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=45.12 E-value=1e+02 Score=24.78 Aligned_cols=72 Identities=14% Similarity=0.113 Sum_probs=43.9
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEE-EEEEEecCC--------C------HhH
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVK-VNCVVMRGF--------N------DDE 141 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~-i~~vi~~~~--------n------~~~ 141 (298)
++.+.+.|++.|.++.......... ...+-+-.+.+.++|+ .+. +........ + .+.
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl-~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 72 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGL-KIASLHPPTNFWSPDEENGSANDEREEALEY 72 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTC-EEEEEEEEESSSCTGTTSTTSSSHHHHHHHH
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCC-eEEEEecccccccccccccCcchhhHHHHHH
Confidence 3567788899899887654332111 3344555566667888 543 333332211 1 567
Q ss_pred HHHHHHHHhhCCCee
Q 022377 142 ICDFVELTRDRPINI 156 (298)
Q Consensus 142 i~~i~~~~~~~g~~~ 156 (298)
+...++.+..+|++.
T Consensus 73 ~~~~i~~a~~lg~~~ 87 (213)
T PF01261_consen 73 LKKAIDLAKRLGAKY 87 (213)
T ss_dssp HHHHHHHHHHHTBSE
T ss_pred HHHHHHHHHHhCCCc
Confidence 888899999988753
No 408
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=45.04 E-value=29 Score=29.46 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=33.2
Q ss_pred EEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchH-hhHHHHHHcCCC
Q 022377 35 IRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA-RKLPKLKESGLT 86 (298)
Q Consensus 35 v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~-~~~~~l~~~~~~ 86 (298)
+.+.|..| .|...++++.+++. |++ +.+.||...-. +..+.|...|+.
T Consensus 18 ~l~~~~~~--~pga~e~L~~L~~~-G~~-~~ivTN~~~~~~~~~~~L~~~gl~ 66 (242)
T TIGR01459 18 VIIDGNHT--YPGAVQNLNKIIAQ-GKP-VYFVSNSPRNIFSLHKTLKSLGIN 66 (242)
T ss_pred ccccCCcc--CccHHHHHHHHHHC-CCE-EEEEeCCCCChHHHHHHHHHCCCC
Confidence 33445555 68899999999984 985 99999976432 233566666654
No 409
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=44.90 E-value=1.6e+02 Score=25.90 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccCccc-cHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEecCC
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTGGEPTVRK-DIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDT 94 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~-~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSldg 94 (298)
+.+...+.++.+.+.|+..|.++.|-|-... ...++++.+++..++. +.+-. ....+....+.++|++.|.++-.|
T Consensus 127 ~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~~~~~~~~i~~l~~~~~~p-vivK~--v~s~~~a~~a~~~G~d~I~v~~~g 203 (299)
T cd02809 127 DREITEDLLRRAEAAGYKALVLTVDTPVLGRRLTWDDLAWLRSQWKGP-LILKG--ILTPEDALRAVDAGADGIVVSNHG 203 (299)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCHHHHHHHHHhcCCC-EEEee--cCCHHHHHHHHHCCCCEEEEcCCC
Confidence 5677888888888889999999888775221 1336777777644554 55442 233567888999999999999665
No 410
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=44.87 E-value=2.1e+02 Score=24.80 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=59.6
Q ss_pred EEEEeCccch-H---hhHHHHHHcCCCeEEEecCCCCH---------HhhhhhcCCCcHHHHHHHHHHHHHcCCC-CEEE
Q 022377 64 LAMTTNGLTL-A---RKLPKLKESGLTSVNISLDTLVP---------AKFEFLTRRKGHEKVMESINAAIEVGYN-PVKV 129 (298)
Q Consensus 64 v~i~TNG~ll-~---~~~~~l~~~~~~~v~iSldg~~~---------~~~~~ir~~~~~~~v~~~i~~l~~~g~~-~v~i 129 (298)
+.-.|.|.-- + +.+..+.+.|.|.+.+-+-.-+| ..+..+.++-+.+.+++.++.+++.... ++.+
T Consensus 15 i~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vl 94 (258)
T PRK13111 15 IPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVL 94 (258)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 6777888733 2 34677888889988888876444 3445555666788999999998854331 3322
Q ss_pred EEEEecCCC--Hh-HHHHHHHHHhhCCCeeEEE
Q 022377 130 NCVVMRGFN--DD-EICDFVELTRDRPINIRFI 159 (298)
Q Consensus 130 ~~vi~~~~n--~~-~i~~i~~~~~~~g~~~~~~ 159 (298)
. ++ .| .. .++++++.+++.|++-..+
T Consensus 95 m-~Y---~N~i~~~G~e~f~~~~~~aGvdGvii 123 (258)
T PRK13111 95 M-TY---YNPIFQYGVERFAADAAEAGVDGLII 123 (258)
T ss_pred E-ec---ccHHhhcCHHHHHHHHHHcCCcEEEE
Confidence 2 21 23 23 5788888888888853333
No 411
>PRK10444 UMP phosphatase; Provisional
Probab=44.86 E-value=43 Score=28.72 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=37.7
Q ss_pred CEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch--HhhHHHHHHcCCC
Q 022377 33 DKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL--ARKLPKLKESGLT 86 (298)
Q Consensus 33 ~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll--~~~~~~l~~~~~~ 86 (298)
..+.+.|++| .|...+.++.+++. |.. +.+.||.... .+..++|...|++
T Consensus 9 DGtL~~~~~~--~p~a~~~l~~L~~~-g~~-~~~~Tn~~~~~~~~~~~~l~~~G~~ 60 (248)
T PRK10444 9 DGVLMHDNVA--VPGAAEFLHRILDK-GLP-LVLLTNYPSQTGQDLANRFATAGVD 60 (248)
T ss_pred CCceEeCCee--CccHHHHHHHHHHC-CCe-EEEEeCCCCCCHHHHHHHHHHcCCC
Confidence 4555667755 67888999999984 885 8899998775 4567888887763
No 412
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=44.86 E-value=62 Score=28.63 Aligned_cols=66 Identities=27% Similarity=0.279 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHh--CCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch--HhhHHHHHHcCCCe
Q 022377 18 NEILRLAYLFVT--SGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL--ARKLPKLKESGLTS 87 (298)
Q Consensus 18 e~~~~~i~~~~~--~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll--~~~~~~l~~~~~~~ 87 (298)
++...+++.+.- +.+..|.+.|+-|. |...+.++.+++. |. .+.++||=+.. .+..+++...|+..
T Consensus 13 ~~~~e~l~~~DtfifDcDGVlW~g~~~i--pGs~e~l~~L~~~-gK-~i~fvTNNStksr~~y~kK~~~lG~~~ 82 (306)
T KOG2882|consen 13 EEARELLDSFDTFIFDCDGVLWLGEKPI--PGSPEALNLLKSL-GK-QIIFVTNNSTKSREQYMKKFAKLGFNS 82 (306)
T ss_pred HHHHHHHhhcCEEEEcCCcceeecCCCC--CChHHHHHHHHHc-CC-cEEEEeCCCcchHHHHHHHHHHhCccc
Confidence 555566665544 34678888877775 6777888888885 75 48888886654 45778888877774
No 413
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=44.83 E-value=1.4e+02 Score=27.29 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=49.1
Q ss_pred CCCHHHHHHHHHHHHhCC-CCEEEEcCCccCc-----cc--c-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcC
Q 022377 14 LLSLNEILRLAYLFVTSG-VDKIRLTGGEPTV-----RK--D-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESG 84 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~-~~~v~~tGGEPll-----~~--~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~ 84 (298)
-.+.++...+++.+.+.| +..+.+++|..-- .. . +....+.++....+. .+.+++..-.+..+.+.+.|
T Consensus 233 g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~p--vi~~G~i~~~~~Ae~~l~~g 310 (363)
T COG1902 233 GLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIP--VIAVGGINDPEQAEEILASG 310 (363)
T ss_pred CCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCC--EEEeCCCCCHHHHHHHHHcC
Confidence 578889999999999999 6888888655431 11 1 335555555532332 34344434467788888876
Q ss_pred -CCeEEEe
Q 022377 85 -LTSVNIS 91 (298)
Q Consensus 85 -~~~v~iS 91 (298)
.|-|.++
T Consensus 311 ~aDlVa~g 318 (363)
T COG1902 311 RADLVAMG 318 (363)
T ss_pred CCCEEEec
Confidence 7777766
No 414
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=44.60 E-value=80 Score=30.22 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEE
Q 022377 109 HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFI 159 (298)
Q Consensus 109 ~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~ 159 (298)
+....+-|+.++++|+ ++.+..--.+.-+++|++.+.+++.++|+.+...
T Consensus 342 ~~NL~~Hi~n~~~fg~-p~VVaiN~F~~Dt~~Ei~~v~~~~~~~g~~~~~~ 391 (524)
T cd00477 342 FANLRKHIENIKKFGV-PVVVAINKFSTDTDAELALVRKLAEEAGAFVAVS 391 (524)
T ss_pred HHHHHHHHHHHHHcCC-CeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 5666677777788999 8777766555457889999999999999865544
No 415
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=44.56 E-value=2.1e+02 Score=24.89 Aligned_cols=92 Identities=16% Similarity=0.207 Sum_probs=59.7
Q ss_pred EEEEeCcc-ch---HhhHHHHHHcCCCeEEEecCCCCH---------HhhhhhcCCCcHHHHHHHHHHHHHcCCC-CEEE
Q 022377 64 LAMTTNGL-TL---ARKLPKLKESGLTSVNISLDTLVP---------AKFEFLTRRKGHEKVMESINAAIEVGYN-PVKV 129 (298)
Q Consensus 64 v~i~TNG~-ll---~~~~~~l~~~~~~~v~iSldg~~~---------~~~~~ir~~~~~~~v~~~i~~l~~~g~~-~v~i 129 (298)
+...|-|. .+ -+.+..|.++|.|.+-+.+-.-+| ..-+.+.++-+.+++++-++.+++.+.. ++.+
T Consensus 20 i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivl 99 (265)
T COG0159 20 IPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVL 99 (265)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 66777776 22 245666777888888877765444 2333445556789999999999976551 4544
Q ss_pred EEEEecCCCHhHHHHHHHHHhhCCCee
Q 022377 130 NCVVMRGFNDDEICDFVELTRDRPINI 156 (298)
Q Consensus 130 ~~vi~~~~n~~~i~~i~~~~~~~g~~~ 156 (298)
.+-..+ .-...++++++.+++.|++-
T Consensus 100 m~Y~Np-i~~~Gie~F~~~~~~~GvdG 125 (265)
T COG0159 100 MTYYNP-IFNYGIEKFLRRAKEAGVDG 125 (265)
T ss_pred EEeccH-HHHhhHHHHHHHHHHcCCCE
Confidence 444333 23345888888888888853
No 416
>KOG3935 consensus Predicted glycerate kinase [Carbohydrate transport and metabolism]
Probab=44.41 E-value=32 Score=30.72 Aligned_cols=59 Identities=19% Similarity=0.140 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCcccc----------HH-HHHHHHhccCCCCcEEEEeCcc
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKD----------IE-EACFHLSKLKGLKTLAMTTNGL 71 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~----------~~-~ii~~~~~~~~~~~v~i~TNG~ 71 (298)
.+++.-++.+.++.+.-...+-.-++||||+++-. +. .+.+.++..-+...+.+.|-|+
T Consensus 306 AE~s~Pt~~~Ale~~~~~~~Pi~Ll~GGEptv~lsg~G~GGRnQelaL~~~~aL~r~~~~~d~tFLSaGT 375 (446)
T KOG3935|consen 306 AERSYPTFRRALENLTIENYPIALLFGGEPTVHLSGPGKGGRNQELALSCLDALKRRVPAHDFTFLSAGT 375 (446)
T ss_pred HhhcchHHHHHHHhhhhccCCeEEEeCCCceEEecCCCCCcccHHHHHHHHHHhcCCCCccceeEeccCC
Confidence 35566677777776655554566678999999732 33 5555555533433566666664
No 417
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=44.40 E-value=1e+02 Score=26.83 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=40.7
Q ss_pred HHHHHHhCCCCE---EEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEec
Q 022377 23 LAYLFVTSGVDK---IRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISL 92 (298)
Q Consensus 23 ~i~~~~~~~~~~---v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSl 92 (298)
+++.+.+.|... |.|-||+|-- .++++.+.+ .++. +.+ .-|... +.++.+.+.|+++|.|+-
T Consensus 48 ~A~~~~~~Ga~~lHvVDLdgg~~~n----~~~i~~i~~-~~~~-vqv-GGGIR~-e~i~~~l~~Ga~rViigT 112 (262)
T PLN02446 48 FAEMYKRDGLTGGHVIMLGADDASL----AAALEALRA-YPGG-LQV-GGGVNS-ENAMSYLDAGASHVIVTS 112 (262)
T ss_pred HHHHHHHCCCCEEEEEECCCCCccc----HHHHHHHHh-CCCC-EEE-eCCccH-HHHHHHHHcCCCEEEEch
Confidence 345555667654 4455666655 455555555 3554 655 666664 889999999999998873
No 418
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=44.25 E-value=2.4e+02 Score=25.45 Aligned_cols=97 Identities=21% Similarity=0.206 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHc-CCCeEEE
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKES-GLTSVNI 90 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~-~~~~v~i 90 (298)
+.-.+.++..++++.+.++++..+- ||+...++.. ++.+++..++. +.+.-+-.. ...+..+.+. .++.+++
T Consensus 194 N~~~~~~~A~~~~~~l~~~~i~~iE----eP~~~~d~~~-~~~l~~~~~ip-ia~~E~~~~-~~~~~~~i~~~~~d~i~~ 266 (355)
T cd03321 194 NQSLTVPEAIERGQALDQEGLTWIE----EPTLQHDYEG-HARIASALRTP-VQMGENWLG-PEEMFKALSAGACDLVMP 266 (355)
T ss_pred CCCcCHHHHHHHHHHHHcCCCCEEE----CCCCCcCHHH-HHHHHHhcCCC-EEEcCCCcC-HHHHHHHHHhCCCCeEec
Confidence 3446667777777777666655554 6776555433 23333333553 443222211 2233444333 3454444
Q ss_pred ecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCE
Q 022377 91 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPV 127 (298)
Q Consensus 91 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v 127 (298)
.+. ..++....++.++.+..+|+ ++
T Consensus 267 ~~~-----------~~GGit~~~~ia~~A~~~gi-~~ 291 (355)
T cd03321 267 DLM-----------KIGGVTGWLRASALAEQAGI-PM 291 (355)
T ss_pred CHh-----------hhCCHHHHHHHHHHHHHcCC-ee
Confidence 321 13467788888888888888 54
No 419
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=44.17 E-value=1.7e+02 Score=26.74 Aligned_cols=81 Identities=20% Similarity=0.266 Sum_probs=50.4
Q ss_pred CCCCCHHHHHHHHHHHHh-------CCCCEEEEcCCc-----cCccc-----------------cHH-HHHHHHhccCCC
Q 022377 12 PQLLSLNEILRLAYLFVT-------SGVDKIRLTGGE-----PTVRK-----------------DIE-EACFHLSKLKGL 61 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~-------~~~~~v~~tGGE-----Pll~~-----------------~~~-~ii~~~~~~~~~ 61 (298)
..+||.++|.++++++.. .|...|-++|+- =||.| .|. ++++.+++.-+-
T Consensus 146 p~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~ 225 (362)
T PRK10605 146 PRALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGA 225 (362)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 468999999999875544 688899998643 12221 243 888888774221
Q ss_pred CcEE--EE--------eCccchHh----hHHHHHHcCCCeEEEec
Q 022377 62 KTLA--MT--------TNGLTLAR----KLPKLKESGLTSVNISL 92 (298)
Q Consensus 62 ~~v~--i~--------TNG~ll~~----~~~~l~~~~~~~v~iSl 92 (298)
..+. |+ ..|..+++ .+..|.+.|++.|.||-
T Consensus 226 ~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~ 270 (362)
T PRK10605 226 DRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSE 270 (362)
T ss_pred CeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Confidence 1122 21 12333333 25667777899999985
No 420
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=44.15 E-value=34 Score=27.38 Aligned_cols=36 Identities=22% Similarity=0.328 Sum_probs=27.3
Q ss_pred CCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccc
Q 022377 32 VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLT 72 (298)
Q Consensus 32 ~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~l 72 (298)
+-.|++.||.-+ |-...+++|+++ .|. .+++|||.+
T Consensus 109 Vvvi~IAGGdT~--PvTaaii~ya~~-rG~--~TisT~GVF 144 (217)
T COG4015 109 VVVICIAGGDTI--PVTAAIINYAKE-RGI--KTISTNGVF 144 (217)
T ss_pred EEEEEecCCCcc--hhHHHHHHHHHH-cCc--eEeecCcee
Confidence 345677799854 456799999998 487 589999964
No 421
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=44.09 E-value=1.4e+02 Score=27.61 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEE--Ec---------CCccCc-cccHH-HHHHHHhcc--CCCCcEEEEeCccchHhhHHH
Q 022377 15 LSLNEILRLAYLFVTSGVDKIR--LT---------GGEPTV-RKDIE-EACFHLSKL--KGLKTLAMTTNGLTLARKLPK 79 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~--~t---------GGEPll-~~~~~-~ii~~~~~~--~~~~~v~i~TNG~ll~~~~~~ 79 (298)
.+.++|..+++.+.+.|...+. |+ +|..+. .++.. ++++.+++. ..+ .+.|+-|-+-+.+.++.
T Consensus 124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv-~vKLsPn~t~i~~ia~a 202 (385)
T PLN02495 124 YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPV-WAKMTPNITDITQPARV 202 (385)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCce-EEEeCCChhhHHHHHHH
Confidence 5789999999999888766444 42 233333 45544 777777763 245 36777777667777788
Q ss_pred HHHcCCCeEEE
Q 022377 80 LKESGLTSVNI 90 (298)
Q Consensus 80 l~~~~~~~v~i 90 (298)
+.+.|.+.|.+
T Consensus 203 a~~~Gadgi~l 213 (385)
T PLN02495 203 ALKSGCEGVAA 213 (385)
T ss_pred HHHhCCCEEEE
Confidence 88888876554
No 422
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=44.03 E-value=2.5e+02 Score=25.42 Aligned_cols=69 Identities=13% Similarity=0.218 Sum_probs=39.6
Q ss_pred CCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc---CCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCe
Q 022377 84 GLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV---GYNPVKVNCVVMRGFNDDEICDFVELTRDRPIN 155 (298)
Q Consensus 84 ~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~---g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~ 155 (298)
+.+.+.+.+-.++..............++++.++..... .+ +|.+.+. ++...+++.++++.+.+.|++
T Consensus 169 ~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~-PV~vKls--p~~~~~~~~~ia~~l~~~Gad 240 (344)
T PRK05286 169 YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYV-PLLVKIA--PDLSDEELDDIADLALEHGID 240 (344)
T ss_pred hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCC-ceEEEeC--CCCCHHHHHHHHHHHHHhCCc
Confidence 478888888666533111101111245555555554431 25 6666655 435566788999988888885
No 423
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=43.93 E-value=98 Score=24.80 Aligned_cols=76 Identities=20% Similarity=0.167 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEc----CCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCe
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLT----GGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTS 87 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~t----GGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~ 87 (298)
...++.+++.+.++.+++.|+..|.+. +|.++-..++ .. .++ .. ..-.+++..++.--+.|+.
T Consensus 14 ~~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~-------~~-~~~---~~-~~~d~l~~~L~~A~~~Gmk- 80 (166)
T PF14488_consen 14 HQNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKL-------SP-GGF---YM-PPVDLLEMILDAADKYGMK- 80 (166)
T ss_pred hcCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCccc-------cC-ccc---cC-CcccHHHHHHHHHHHcCCE-
Confidence 468999999999999999999998875 2333222111 00 011 11 1111345556666666776
Q ss_pred EEEecCCCCHHhhh
Q 022377 88 VNISLDTLVPAKFE 101 (298)
Q Consensus 88 v~iSldg~~~~~~~ 101 (298)
|.|+|.. ++..++
T Consensus 81 v~~Gl~~-~~~~w~ 93 (166)
T PF14488_consen 81 VFVGLYF-DPDYWD 93 (166)
T ss_pred EEEeCCC-Cchhhh
Confidence 7777765 344444
No 424
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=43.84 E-value=2.1e+02 Score=24.57 Aligned_cols=110 Identities=12% Similarity=0.205 Sum_probs=57.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCc--------cccHHHHHHHHhccCCCCcEE-EEeCccc---h-------
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTV--------RKDIEEACFHLSKLKGLKTLA-MTTNGLT---L------- 73 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll--------~~~~~~ii~~~~~~~~~~~v~-i~TNG~l---l------- 73 (298)
..++.++. ++.+.++|...|.++..++.. ..++.++-+.+.+ .|+. ++ +.+++.. +
T Consensus 14 ~~~~~~e~---~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gl~-i~~~~~~~~~~~~~~~~d~~~ 88 (284)
T PRK13210 14 KHLSWEER---LVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYE-TGVR-IPSMCLSGHRRFPFGSRDPAT 88 (284)
T ss_pred CCCCHHHH---HHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHH-cCCC-ceEEecccccCcCCCCCCHHH
Confidence 34666665 566668899998887544321 1124567777777 4886 54 4333310 0
Q ss_pred --------HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHH----HcCCCCEEEEEE
Q 022377 74 --------ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI----EVGYNPVKVNCV 132 (298)
Q Consensus 74 --------~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~----~~g~~~v~i~~v 132 (298)
.+.++.....|...|.+. +.+. +........++.+.+.++.+. +.|+ .+.+...
T Consensus 89 r~~~~~~~~~~i~~a~~lG~~~v~~~--~~~~--~~~~~~~~~~~~~~~~l~~l~~~a~~~gv-~l~lE~~ 154 (284)
T PRK13210 89 RERALEIMKKAIRLAQDLGIRTIQLA--GYDV--YYEEKSEETRQRFIEGLAWAVEQAAAAQV-MLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEC--Cccc--ccccccHHHHHHHHHHHHHHHHHHHHhCC-EEEEEec
Confidence 122444455688888764 2211 000001123555555555544 4577 6666553
No 425
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=43.68 E-value=1.9e+02 Score=24.15 Aligned_cols=76 Identities=21% Similarity=0.239 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEec
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISL 92 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSl 92 (298)
..+.++...+++.+.+.|++.|-++ +-.++-.+.++.+++..+ .+ +.--|+.+ ++.++...++|.+ +.+|.
T Consensus 23 ~~~~~~a~~i~~al~~~Gi~~iEit----l~~~~~~~~I~~l~~~~p--~~-~IGAGTVl~~~~a~~a~~aGA~-FivsP 94 (212)
T PRK05718 23 INKLEDAVPLAKALVAGGLPVLEVT----LRTPAALEAIRLIAKEVP--EA-LIGAGTVLNPEQLAQAIEAGAQ-FIVSP 94 (212)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEe----cCCccHHHHHHHHHHHCC--CC-EEEEeeccCHHHHHHHHHcCCC-EEECC
Confidence 3678999999999999999988888 555667788888776322 12 23456666 5789999999999 66775
Q ss_pred CCCCHH
Q 022377 93 DTLVPA 98 (298)
Q Consensus 93 dg~~~~ 98 (298)
.. +++
T Consensus 95 ~~-~~~ 99 (212)
T PRK05718 95 GL-TPP 99 (212)
T ss_pred CC-CHH
Confidence 43 444
No 426
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=43.36 E-value=1.3e+02 Score=25.61 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=31.8
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEe
Q 022377 20 ILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 20 ~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iS 91 (298)
...+.+.+.+.|+..++...+.|-...++ +.++.++ . + +-+..||-.. .+.+.++...|.+.|+|.
T Consensus 154 ~~~la~~l~~aG~d~ihv~~~~~g~~ad~-~~I~~i~-~-~---ipVIgnGgI~s~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 154 DEELARLIEKAGADIIHVDAMDPGNHADL-KKIRDIS-T-E---LFIIGNNSVTTIESAKEMFSYGADMVSVA 220 (233)
T ss_pred HHHHHHHHHHhCCCEEEECcCCCCCCCcH-HHHHHhc-C-C---CEEEEECCcCCHHHHHHHHHcCCCEEEEc
Confidence 34444555556666666655444222222 3333332 1 2 3345555444 345555555666666665
No 427
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=43.20 E-value=1.3e+02 Score=28.50 Aligned_cols=114 Identities=9% Similarity=0.170 Sum_probs=59.4
Q ss_pred EEcCCccCccccHHHHHHHHhccCCCCcEEEEeCc-c-chHhhHHHHHH------------cCCCeEEEecCCCCHHhhh
Q 022377 36 RLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNG-L-TLARKLPKLKE------------SGLTSVNISLDTLVPAKFE 101 (298)
Q Consensus 36 ~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG-~-ll~~~~~~l~~------------~~~~~v~iSldg~~~~~~~ 101 (298)
.+.|||--|...+.++.+...+ ..+ +.+.|.. + ++-+.++.+.+ .++..|.|+-.|+.-..
T Consensus 66 ~VfGG~~~L~~~I~~~~~~~~~-p~~--I~V~tTC~~eiIGDDi~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~Gs~-- 140 (454)
T cd01973 66 AVFGGAKRVEEGVLVLARRYPD-LRV--IPIITTCSTEIIGDDIEGVIRKLNEALKEEFPDREVHLIPVHTPSFKGSM-- 140 (454)
T ss_pred eEECcHHHHHHHHHHHHHhcCC-CCE--EEEECCchHhhhccCHHHHHHHHHhhhhhccCCCCCeEEEeeCCCcCCCH--
Confidence 4567776666666666554322 233 4455554 3 23343333322 13444555544442111
Q ss_pred hhcCCCcHHHHHHHH-HHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEEE
Q 022377 102 FLTRRKGHEKVMESI-NAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRFI 159 (298)
Q Consensus 102 ~ir~~~~~~~v~~~i-~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~~ 159 (298)
..+|+.+++++ +.+...+-.+-.||..-.. .+..++.++.+++.+.|+.+..+
T Consensus 141 ----~~G~~~a~~ali~~~~~~~~~~~~VNii~~~-~~~~D~~ei~~lL~~~Gl~v~~~ 194 (454)
T cd01973 141 ----VTGYDEAVRSVVKTIAKKGAPSGKLNVFTGW-VNPGDVVELKHYLSEMDVEANIL 194 (454)
T ss_pred ----HHHHHHHHHHHHHHhcccCCCCCcEEEECCC-CChHHHHHHHHHHHHcCCCEEEe
Confidence 12477777655 3444332213346665332 35678999999999999876543
No 428
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=42.96 E-value=2.2e+02 Score=24.99 Aligned_cols=76 Identities=13% Similarity=0.167 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhCC--CCEEEE--c------CCccCc-cccH-HHHHHHHhccCCCCcEEEEeCccc--hHhhHHHH
Q 022377 15 LSLNEILRLAYLFVTSG--VDKIRL--T------GGEPTV-RKDI-EEACFHLSKLKGLKTLAMTTNGLT--LARKLPKL 80 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~--~~~v~~--t------GGEPll-~~~~-~~ii~~~~~~~~~~~v~i~TNG~l--l~~~~~~l 80 (298)
.+.+++.++++.+.+.+ ...|.+ + .|..++ .+++ .++++.+++..++. +.+=.+... ..+.++.+
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~p-v~vKi~~~~~~~~~~a~~l 178 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVP-VFAKLSPNVTDITEIAKAA 178 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCC-EEEECCCChhhHHHHHHHH
Confidence 46788888888887642 454444 2 244444 4554 48999888754554 655555432 23456678
Q ss_pred HHcCCCeEEEe
Q 022377 81 KESGLTSVNIS 91 (298)
Q Consensus 81 ~~~~~~~v~iS 91 (298)
.++|++.|.++
T Consensus 179 ~~~G~d~i~v~ 189 (300)
T TIGR01037 179 EEAGADGLTLI 189 (300)
T ss_pred HHcCCCEEEEE
Confidence 88899988876
No 429
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=42.45 E-value=63 Score=23.35 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=35.3
Q ss_pred EEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCee
Q 022377 89 NISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINI 156 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~ 156 (298)
-+.+||. .| ++...+.-+.+.|+.|++.|+ ++.+-+ . -......++.+.+.++|+.+
T Consensus 2 l~D~dGv---l~---~g~~~ipga~e~l~~L~~~g~-~~~~lT---N-ns~~s~~~~~~~L~~~Gi~~ 58 (101)
T PF13344_consen 2 LFDLDGV---LY---NGNEPIPGAVEALDALRERGK-PVVFLT---N-NSSRSREEYAKKLKKLGIPV 58 (101)
T ss_dssp EEESTTT---SE---ETTEE-TTHHHHHHHHHHTTS-EEEEEE---S--SSS-HHHHHHHHHHTTTT-
T ss_pred EEeCccE---eE---eCCCcCcCHHHHHHHHHHcCC-CEEEEe---C-CCCCCHHHHHHHHHhcCcCC
Confidence 4567774 22 344458889999999999998 664333 2 12334566777778888853
No 430
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=42.34 E-value=93 Score=25.41 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=36.9
Q ss_pred HHHHHHHH--HHHHhCCCCEEEEcCCccCccccHHHHHHHHhcc-CCCCcEEEEeCccchH
Q 022377 17 LNEILRLA--YLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKL-KGLKTLAMTTNGLTLA 74 (298)
Q Consensus 17 ~e~~~~~i--~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~-~~~~~v~i~TNG~ll~ 74 (298)
.+++.+.+ .+....|-..+.++.|.|+++.-...+++.+.+. .++. +.+.-+-+.+.
T Consensus 60 ~~~~~~~i~~~~~~~~g~~V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~-v~iiPGiSs~~ 119 (210)
T PF00590_consen 60 YDEIAEIIEAIEAAKEGKDVVVLVSGDPLFFSTGSYLVRALRAEERGIE-VEIIPGISSFQ 119 (210)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEESBSTTSSSSHHHHHHHHHHHHTTCE-EEEE--TTHHH
T ss_pred hhHHHHHHHHHHHHhccCCEEEeCCCCCCcccHHHHHHHHHHhhcCCCc-eEEEecCcHHH
Confidence 45555555 3333445446667899999998888888888772 4885 87765554443
No 431
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=42.21 E-value=2.1e+02 Score=24.23 Aligned_cols=119 Identities=14% Similarity=0.100 Sum_probs=56.9
Q ss_pred HHHHHHHHhccCCCCcEEEEe-Cccc-------hHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHH
Q 022377 48 IEEACFHLSKLKGLKTLAMTT-NGLT-------LARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAA 119 (298)
Q Consensus 48 ~~~ii~~~~~~~~~~~v~i~T-NG~l-------l~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l 119 (298)
..+.++++++. |+. +.+.+ ..+. +.+.++.+.+.|.+.|.+. |+ .|.-.-+.+.+.++.+
T Consensus 117 ~~~~i~~a~~~-G~~-v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~-Dt---------~G~~~P~~v~~li~~l 184 (265)
T cd03174 117 AEEAIEAAKEA-GLE-VEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK-DT---------VGLATPEEVAELVKAL 184 (265)
T ss_pred HHHHHHHHHHC-CCe-EEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec-hh---------cCCcCHHHHHHHHHHH
Confidence 34556666663 664 44443 2222 2345666677777766654 33 1223345566666666
Q ss_pred HHcCCCCEEEEEEEecCCCHhH--HHHHHHHHhhCCCeeEEEeeecCCCCCCcccCCCCHHHHHHHHHHh
Q 022377 120 IEVGYNPVKVNCVVMRGFNDDE--ICDFVELTRDRPINIRFIEFMPFDGNVWNVKKLVPYAEMLDTVVKK 187 (298)
Q Consensus 120 ~~~g~~~v~i~~vi~~~~n~~~--i~~i~~~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~ 187 (298)
++.-- .+.+. ++- +|.-. +...+.. .+.|+++.--.+.+.|+.. -..+.++++..+...
T Consensus 185 ~~~~~-~~~~~--~H~-Hn~~gla~an~laA-~~aG~~~id~s~~G~G~~~----Gn~~~e~~~~~l~~~ 245 (265)
T cd03174 185 REALP-DVPLG--LHT-HNTLGLAVANSLAA-LEAGADRVDGSVNGLGERA----GNAATEDLVAALEGL 245 (265)
T ss_pred HHhCC-CCeEE--EEe-CCCCChHHHHHHHH-HHcCCCEEEeccccccccc----cCccHHHHHHHHHhc
Confidence 65422 22222 232 34322 2222222 2356654444555555322 224567777776654
No 432
>PRK08005 epimerase; Validated
Probab=42.19 E-value=2.1e+02 Score=24.00 Aligned_cols=113 Identities=7% Similarity=-0.029 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc--CCc--cCccccHHHHHHHHhccCCCC-cEEE-EeCccchHhhHHHHHHcCCCeEE
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLT--GGE--PTVRKDIEEACFHLSKLKGLK-TLAM-TTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~t--GGE--Pll~~~~~~ii~~~~~~~~~~-~v~i-~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
++-.+.+-++++.+.|+..+++- -|. |-+... .++++.+++...+. .+.+ ++| -.+.++.+.++|.+.|.
T Consensus 11 d~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG-~~~i~~l~~~t~~~~DvHLMv~~---P~~~i~~~~~~gad~It 86 (210)
T PRK08005 11 DPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFG-MKTIQAVAQQTRHPLSFHLMVSS---PQRWLPWLAAIRPGWIF 86 (210)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccC-HHHHHHHHhcCCCCeEEEeccCC---HHHHHHHHHHhCCCEEE
Confidence 44566777888888888877763 343 433321 24444454422221 2433 233 24578999999999888
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
|...+.. ...+.++.+++.|. ++ ...+.|+...+.++.++..+
T Consensus 87 ~H~Ea~~--------------~~~~~l~~Ik~~G~-k~--GlAlnP~Tp~~~i~~~l~~v 129 (210)
T PRK08005 87 IHAESVQ--------------NPSEILADIRAIGA-KA--GLALNPATPLLPYRYLALQL 129 (210)
T ss_pred EcccCcc--------------CHHHHHHHHHHcCC-cE--EEEECCCCCHHHHHHHHHhc
Confidence 8877521 23457778888898 65 44566755566666665533
No 433
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=42.17 E-value=1.6e+02 Score=26.69 Aligned_cols=83 Identities=24% Similarity=0.272 Sum_probs=55.3
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHh-CCCCEEEEcCCccCccccHHHHHHHHhccCCCC--cEEEEeCccchHhhHH
Q 022377 2 PPEGVDLTPKPQLLSLNEILRLAYLFVT-SGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLK--TLAMTTNGLTLARKLP 78 (298)
Q Consensus 2 ~~~~~~~~~~~~~l~~e~~~~~i~~~~~-~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~--~v~i~TNG~ll~~~~~ 78 (298)
|-+|+-+.. ...+++-++.++|.-+.- +.-..|.++||-|.+.+++..+.-.+... .+- ...++|+|.-.++..+
T Consensus 233 P~~GTPle~-~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s~gr~~~~~~~q~~~~~aGan-si~~g~~~ltt~~~~~e~D~~ 310 (335)
T COG0502 233 PIPGTPLEN-AKPLDPFEFLKTIAVARIIMPKSMIRLSAGRETMLPELQALAFMAGAN-SIFVGDKYLTTPGPDEDKDLE 310 (335)
T ss_pred CCCCCcccc-CCCCCHHHHHHHHHHHHHHCCcceeEccCCcccccHHHHHHHHHhccc-eeeecceEeecCCCCchhHHH
Confidence 556555544 677888888888876544 44468889999999999976555554331 211 1356788866667777
Q ss_pred HHHHcCCC
Q 022377 79 KLKESGLT 86 (298)
Q Consensus 79 ~l~~~~~~ 86 (298)
.+.+.++.
T Consensus 311 ~l~~lgl~ 318 (335)
T COG0502 311 LLKDLGLE 318 (335)
T ss_pred HHHHcCCC
Confidence 77776554
No 434
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=42.16 E-value=2.4e+02 Score=24.82 Aligned_cols=164 Identities=12% Similarity=0.077 Sum_probs=93.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEE-EEcCC-ccCcccc-HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKI-RLTGG-EPTVRKD-IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v-~~tGG-EPll~~~-~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
+-.+.|.+..+++.+.+.+.+-| .++-| -.....+ +..++..+.+...+. |.+...=-.--+.+.+..+.|+.+|.
T Consensus 24 Nv~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~VP-ValHLDH~~~~e~i~~ai~~GftSVM 102 (284)
T PRK12857 24 NCNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKASVP-VALHLDHGTDFEQVMKCIRNGFTSVM 102 (284)
T ss_pred EeCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHcCCCeEE
Confidence 44678899999999988774433 33322 2333334 335555554445775 77765522223567777788999888
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC-----------HhHHHHHHHHHhhCCCeeEE
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN-----------DDEICDFVELTRDRPINIRF 158 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n-----------~~~i~~i~~~~~~~g~~~~~ 158 (298)
+.--..+-+ .+.+.+.+.++.++..|+ .|+...=...|.. +.+.++..+|+.+.|++.--
T Consensus 103 ~DgS~lp~e--------eNi~~T~~vv~~Ah~~gv-sVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LA 173 (284)
T PRK12857 103 IDGSKLPLE--------ENIALTKKVVEIAHAVGV-SVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALA 173 (284)
T ss_pred EeCCCCCHH--------HHHHHHHHHHHHHHHcCC-EEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEe
Confidence 764333222 235667777888888888 7765541111211 23578889999999987444
Q ss_pred EeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 159 IEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 159 ~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
+.+-...+. ....+.+.++ .++.|.+..
T Consensus 174 vaiGt~HG~-y~~~p~Ld~~-~L~~i~~~~ 201 (284)
T PRK12857 174 IAIGTAHGP-YKGEPKLDFD-RLAKIKELV 201 (284)
T ss_pred eccCccccc-cCCCCcCCHH-HHHHHHHHh
Confidence 433222221 1122345543 445555543
No 435
>PRK07945 hypothetical protein; Provisional
Probab=42.07 E-value=97 Score=27.96 Aligned_cols=73 Identities=18% Similarity=0.177 Sum_probs=49.3
Q ss_pred CccCccccHHHHHHHHhccCCCCcEEEEeCccch---HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHH
Q 022377 40 GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL---ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESI 116 (298)
Q Consensus 40 GEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll---~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i 116 (298)
+-|....++.++++.+++. ++. +.|+|+|... .+.++..++.|+. +.|+=|+..++. +...-.++
T Consensus 239 ~~~~~~~~~~~i~~a~~e~-g~~-lEINt~~~r~~P~~~il~~a~e~G~~-vtigSDAH~p~~---------v~~~~~~~ 306 (335)
T PRK07945 239 TRPESKFDAEAVFAACREH-GTA-VEINSRPERRDPPTRLLRLALDAGCL-FSIDTDAHAPGQ---------LDWLGYGC 306 (335)
T ss_pred CCChhhcCHHHHHHHHHHh-CCE-EEEeCCCCCCCChHHHHHHHHHcCCe-EEecCCCCChhh---------cchHHHHH
Confidence 3344444567888888884 885 8899988543 2467888888876 777777765442 12233377
Q ss_pred HHHHHcCC
Q 022377 117 NAAIEVGY 124 (298)
Q Consensus 117 ~~l~~~g~ 124 (298)
+.+++.|+
T Consensus 307 ~~a~~~g~ 314 (335)
T PRK07945 307 ERAEEAGV 314 (335)
T ss_pred HHHHHcCC
Confidence 88888888
No 436
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=42.03 E-value=1.5e+02 Score=22.82 Aligned_cols=17 Identities=12% Similarity=0.419 Sum_probs=9.8
Q ss_pred hhHHHHHHcCCCeEEEe
Q 022377 75 RKLPKLKESGLTSVNIS 91 (298)
Q Consensus 75 ~~~~~l~~~~~~~v~iS 91 (298)
+.++.+.++|+..|.+.
T Consensus 117 ~vmd~l~~aG~~~v~l~ 133 (141)
T PRK11267 117 KVMDTLHQAGYLKIGLV 133 (141)
T ss_pred HHHHHHHHcCCCeEEEE
Confidence 34566666666655553
No 437
>PTZ00124 adenosine deaminase; Provisional
Probab=41.90 E-value=2.8e+02 Score=25.40 Aligned_cols=79 Identities=10% Similarity=0.058 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHHHHhCC--CCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCcc----chHhhHHHHHHcCCC
Q 022377 13 QLLSLNEILRLAYLFVTSG--VDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGL----TLARKLPKLKESGLT 86 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~--~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~----ll~~~~~~l~~~~~~ 86 (298)
+..+.+...+.++.+.+.. +..+.+.|.|-- ...+.+..+++++. |+. +++-..=. ...+..+.+...|.+
T Consensus 172 R~~~~e~a~e~~~~a~~~~~~vvGiDLaG~E~~-~~~f~~~f~~Ar~~-Gl~-~t~HaGE~~~~~~~~~v~~ai~~l~~~ 248 (362)
T PTZ00124 172 TGHDAAPIKESADFCLKHKADFVGFDHAGHEVD-LKPFKDIFDYVREA-GVN-LTVHAGEDVTLPNLNTLYSAIQVLKVK 248 (362)
T ss_pred CCCCHHHHHHHHHHHHhccCCeEEEeccCCCCC-cHHHHHHHHHHHHC-CCC-EEEEeCCCCCCCcchhHHHHHHHhCCC
Confidence 3457777777777776643 455666777632 35578889999984 885 77765421 112334444445666
Q ss_pred eEEEecCC
Q 022377 87 SVNISLDT 94 (298)
Q Consensus 87 ~v~iSldg 94 (298)
+|.-.+..
T Consensus 249 RIGHG~~~ 256 (362)
T PTZ00124 249 RIGHGIRV 256 (362)
T ss_pred cccccccc
Confidence 66544443
No 438
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=41.63 E-value=2.7e+02 Score=25.28 Aligned_cols=96 Identities=15% Similarity=0.120 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch--HhhHHHHHHcC-CCeEE
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL--ARKLPKLKESG-LTSVN 89 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll--~~~~~~l~~~~-~~~v~ 89 (298)
.-.+.++..++++.+.++++..+- ||+-..++ +-...+++..++. +. +.-.+. .+.+..+.+.+ ++.|+
T Consensus 198 ~~~~~~~A~~~~~~l~~~~l~~iE----eP~~~~d~-~~~~~l~~~~~ip-Ia--~~E~~~~~~~~~~~~i~~~a~d~v~ 269 (368)
T cd03329 198 HWYSRADALRLGRALEELGFFWYE----DPLREASI-SSYRWLAEKLDIP-IL--GTEHSRGALESRADWVLAGATDFLR 269 (368)
T ss_pred CCcCHHHHHHHHHHhhhcCCCeEe----CCCCchhH-HHHHHHHhcCCCC-EE--ccCcccCcHHHHHHHHHhCCCCEEe
Confidence 335556666666655555433332 56655554 2233444433443 32 222221 12233333332 44444
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEE
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVK 128 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~ 128 (298)
+.+ ...+++...++....+.++|+ ++.
T Consensus 270 ~d~-----------~~~GGit~~~~ia~~a~~~gi-~~~ 296 (368)
T cd03329 270 ADV-----------NLVGGITGAMKTAHLAEAFGL-DVE 296 (368)
T ss_pred cCc-----------cccCCHHHHHHHHHHHHHcCC-EEE
Confidence 322 123457777777777777777 543
No 439
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=41.49 E-value=1.2e+02 Score=23.47 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCC-EEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeC
Q 022377 13 QLLSLNEILRLAYLFVTSGVD-KIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTN 69 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~-~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TN 69 (298)
...+.+++...+..+.+.+.. .|.+.+-+=.-+..+.++++.+++. |+..+++.|.
T Consensus 77 ~~v~~~~l~~~l~~~~~~~~~~~v~i~aD~~v~y~~vv~vm~~l~~a-G~~~v~L~t~ 133 (137)
T COG0848 77 KPVSLEELEAALAALAKGKKNPRVVIRADKNVKYGTVVKVMDLLKEA-GFKKVGLVTE 133 (137)
T ss_pred ccccHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHc-CCceEEEEec
Confidence 458888888888877753333 4666665555566788999998885 7777888775
No 440
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=41.46 E-value=1.4e+02 Score=22.22 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=15.6
Q ss_pred EEEEeCccch----HhhHHHHHHcCCCeEEEe
Q 022377 64 LAMTTNGLTL----ARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 64 v~i~TNG~ll----~~~~~~l~~~~~~~v~iS 91 (298)
+.+......- -+.++.++.+|+..|.+.
T Consensus 87 v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 87 VTLKSDKEAKFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred EEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEE
Confidence 5555444332 244677777777766653
No 441
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=41.26 E-value=2.6e+02 Score=24.96 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=37.2
Q ss_pred HHHHHHHhCCCCEEEEc---CCccCcccc---------HHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEE
Q 022377 22 RLAYLFVTSGVDKIRLT---GGEPTVRKD---------IEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVN 89 (298)
Q Consensus 22 ~~i~~~~~~~~~~v~~t---GGEPll~~~---------~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~ 89 (298)
+.++.+.+.|...|.+. ++.+++.|+ +.++++.+++. +.. ..+..-|. ....+..+.+.+++.
T Consensus 184 ~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~-g~~-~ilH~CG~-~~~~~~~l~~~g~d~-- 258 (340)
T TIGR01463 184 AYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEI-GGI-TVLHICGF-TQPILRDIANNGCFG-- 258 (340)
T ss_pred HHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhc-CCc-eEEEECCC-chhhHHHHHHhCCCE--
Confidence 33444455777766664 344577654 23455556553 432 33444442 244577788888885
Q ss_pred EecCC
Q 022377 90 ISLDT 94 (298)
Q Consensus 90 iSldg 94 (298)
+|+|.
T Consensus 259 ls~d~ 263 (340)
T TIGR01463 259 FSVDM 263 (340)
T ss_pred EeecC
Confidence 44554
No 442
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=41.09 E-value=2.5e+02 Score=24.63 Aligned_cols=122 Identities=14% Similarity=0.086 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCcc-----------CccccHHHHHHHHhccCCCCcEEEEeCcc--------ch
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEP-----------TVRKDIEEACFHLSKLKGLKTLAMTTNGL--------TL 73 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEP-----------ll~~~~~~ii~~~~~~~~~~~v~i~TNG~--------ll 73 (298)
...+.+++...+..+...|++.|-.-+|+| --...-.++++.+++..+-. +.+-.-|+ ..
T Consensus 69 r~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~~~~~~~~~~~~f~~a~~Li~~i~~~~~~~-f~igva~~Pe~Hp~~~~~ 147 (281)
T TIGR00677 69 TNMPIEMIDDALERAYSNGIQNILALRGDPPHIGDDWTEVEGGFQYAVDLVKYIRSKYGDY-FCIGVAGYPEGHPEAESV 147 (281)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCc-eEEEEEECCCCCCCCCCH
Q ss_pred HhhHHHHHH---cCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHH
Q 022377 74 ARKLPKLKE---SGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELT 149 (298)
Q Consensus 74 ~~~~~~l~~---~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~ 149 (298)
+..++.|++ +|.+ .-|+==.++.+ ...+.++.+++.|+ .+-|-.-+++=.+...+..+.+++
T Consensus 148 ~~d~~~L~~Ki~aGA~-f~iTQ~~Fd~~------------~~~~f~~~~~~~gi-~~PIi~GI~pi~s~~~~~~~~~~~ 212 (281)
T TIGR00677 148 ELDLKYLKEKVDAGAD-FIITQLFYDVD------------NFLKFVNDCRAIGI-DCPIVPGIMPINNYASFLRRAKWS 212 (281)
T ss_pred HHHHHHHHHHHHcCCC-EeeccceecHH------------HHHHHHHHHHHcCC-CCCEEeeccccCCHHHHHHHHhcC
No 443
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=40.97 E-value=2.6e+02 Score=24.90 Aligned_cols=64 Identities=19% Similarity=0.254 Sum_probs=34.5
Q ss_pred HHHHHhCCCCEEEEc---CCccCcccc-H--------HHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEe
Q 022377 24 AYLFVTSGVDKIRLT---GGEPTVRKD-I--------EEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 24 i~~~~~~~~~~v~~t---GGEPll~~~-~--------~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iS 91 (298)
++...+.|+..|.+. ++-+++.|+ + .++++.+++. . ..+..-|- ....++.+.+.+.+. +|
T Consensus 186 ~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~--~--~ilH~cG~-~~~~l~~~~~~g~d~--~~ 258 (339)
T PRK06252 186 AKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGL--P--TILHICGD-LTSILEEMADCGFDG--IS 258 (339)
T ss_pred HHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccC--C--cEEEECCC-chHHHHHHHhcCCCe--ec
Confidence 334445687777775 345677664 2 2444444432 1 23333442 244678888888885 44
Q ss_pred cCC
Q 022377 92 LDT 94 (298)
Q Consensus 92 ldg 94 (298)
+|.
T Consensus 259 ~d~ 261 (339)
T PRK06252 259 IDE 261 (339)
T ss_pred cCC
Confidence 544
No 444
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=40.90 E-value=1.6e+02 Score=25.89 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHhCCCCEEEEc
Q 022377 18 NEILRLAYLFVTSGVDKIRLT 38 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~~v~~t 38 (298)
++...+.+.+.+.|+..|.++
T Consensus 169 ~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 169 TDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred hhHHHHHHHHHHcCCCEEEEE
Confidence 444455555555555555553
No 445
>smart00642 Aamy Alpha-amylase domain.
Probab=40.86 E-value=1.3e+02 Score=24.02 Aligned_cols=51 Identities=10% Similarity=0.230 Sum_probs=31.7
Q ss_pred CCcHHHHHHHHHHHHHcCCCCEEEEEEEecCC---------------------CHhHHHHHHHHHhhCCCee
Q 022377 106 RKGHEKVMESINAAIEVGYNPVKVNCVVMRGF---------------------NDDEICDFVELTRDRPINI 156 (298)
Q Consensus 106 ~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~---------------------n~~~i~~i~~~~~~~g~~~ 156 (298)
.++|+.+.+.+..+++.|+..+.+.-+..... +.+++.++++-+++.|+.+
T Consensus 15 ~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~v 86 (166)
T smart00642 15 GGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKV 86 (166)
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEE
Confidence 45688888888888888874444433221110 2356777777777777754
No 446
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=40.84 E-value=2.2e+02 Score=25.45 Aligned_cols=76 Identities=16% Similarity=0.224 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCcc------------Cc-cccHH-HHHHHHhccCCCCcEEEEe-Cccc-----hH
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLTGGEP------------TV-RKDIE-EACFHLSKLKGLKTLAMTT-NGLT-----LA 74 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~tGGEP------------ll-~~~~~-~ii~~~~~~~~~~~v~i~T-NG~l-----l~ 74 (298)
-+++++.+.+..+.+.|...|.+--|=| ++ +|++. ++++.+++..++. +++-. .|.. ..
T Consensus 74 ~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~p-v~vKiR~G~~~~~~~~~ 152 (321)
T PRK10415 74 SDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVP-VTLKIRTGWAPEHRNCV 152 (321)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCc-eEEEEEccccCCcchHH
Confidence 3678888888777777877777765555 55 36655 8999887744554 55433 3332 12
Q ss_pred hhHHHHHHcCCCeEEEe
Q 022377 75 RKLPKLKESGLTSVNIS 91 (298)
Q Consensus 75 ~~~~~l~~~~~~~v~iS 91 (298)
+.++.+.++|++.|.|+
T Consensus 153 ~~a~~le~~G~d~i~vh 169 (321)
T PRK10415 153 EIAQLAEDCGIQALTIH 169 (321)
T ss_pred HHHHHHHHhCCCEEEEe
Confidence 44567788899988775
No 447
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=40.78 E-value=1.5e+02 Score=24.90 Aligned_cols=46 Identities=20% Similarity=0.266 Sum_probs=33.9
Q ss_pred HHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchH
Q 022377 27 FVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLA 74 (298)
Q Consensus 27 ~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~ 74 (298)
..+.|-..+.++.|+|+++.-...+++.+.+. ++. +.+...-+.+.
T Consensus 86 ~~~~g~~Vv~l~~GDP~~y~~~~~l~~~~~~~-~~~-veviPGiSs~~ 131 (230)
T TIGR01467 86 ELEEGRDVAFLTLGDPSLYSTFSYLLQRLQGM-GIE-VEVVPGITSFA 131 (230)
T ss_pred HHHCCCcEEEEeCCCCCcccCHHHHHHHHHHC-CCc-EEEeCChhHHH
Confidence 33456567778899999998888888888774 774 88876655443
No 448
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=40.67 E-value=2e+02 Score=23.41 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=24.3
Q ss_pred ccCccccHHHHHHHHhccCCCCcEEEEeCccc
Q 022377 41 EPTVRKDIEEACFHLSKLKGLKTLAMTTNGLT 72 (298)
Q Consensus 41 EPll~~~~~~ii~~~~~~~~~~~v~i~TNG~l 72 (298)
..-+.|+..++++.+++. |+. +.+.||+..
T Consensus 92 ~~~~~~~~~~~L~~L~~~-g~~-l~i~Sn~~~ 121 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAK-GFK-TACITNNFP 121 (211)
T ss_pred ccccChhHHHHHHHHHHC-CCe-EEEEeCCCC
Confidence 345678899999999984 885 999999864
No 449
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE. Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers both the N-and C-terminal barrel, and some single-barrel sequences, mostly from Archaea. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains from both barrels contribute to the binding o
Probab=40.55 E-value=2.6e+02 Score=24.66 Aligned_cols=111 Identities=15% Similarity=0.210 Sum_probs=59.4
Q ss_pred HHHHHHHhCCCCEEEEcCCccCcccc----------HHHHHHHHhccCCCC-cEEEEeCccchHhhHHHHHHcCCCeEEE
Q 022377 22 RLAYLFVTSGVDKIRLTGGEPTVRKD----------IEEACFHLSKLKGLK-TLAMTTNGLTLARKLPKLKESGLTSVNI 90 (298)
Q Consensus 22 ~~i~~~~~~~~~~v~~tGGEPll~~~----------~~~ii~~~~~~~~~~-~v~i~TNG~ll~~~~~~l~~~~~~~v~i 90 (298)
..++++.+.|+..|.+ .||.+..+ +.++++.+.+..+.. .+.+.++ ..+..+.+.+++.+++
T Consensus 155 ~~~~~l~~~G~~~iqi--dEP~l~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~lHic~~-----~~~~~l~~~~vd~l~~ 227 (321)
T cd03310 155 EQVKELKNRGIVVVQI--DEPSLGAVGAGAFEDLEIVDAALEEVSLKSGGDVEVHLCAP-----LDYEALLELGVDVIGF 227 (321)
T ss_pred HHHHHHHhcCCcEEEe--CCCccccccccccchHHHHHHHHHHHhhccCCceEEEECCC-----CCHHHHHhCCCCEEEE
Confidence 4455666677665655 67766543 224555443311221 1444444 4567788888887666
Q ss_pred ecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcC-CCCEEEEEEEecC----CCHh----HHHHHHHHHhhCC
Q 022377 91 SLDTLVPAKFEFLTRRKGHEKVMESINAAIEVG-YNPVKVNCVVMRG----FNDD----EICDFVELTRDRP 153 (298)
Q Consensus 91 Sldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g-~~~v~i~~vi~~~----~n~~----~i~~i~~~~~~~g 153 (298)
.+.... + ...+++..+.+.| . ...+...++.+ .|.. .++++.+.+...+
T Consensus 228 D~~~~~-~------------~~~~~l~~~~~~g~~-~~~lg~gvid~~~~~~~~~~~~~~~~~~~~~l~~~~ 285 (321)
T cd03310 228 DAAALP-S------------KYLEDLKKLLRIGVR-TLILGLVVTDNEAKGRNAWKEIERLEKLVRRLEEPG 285 (321)
T ss_pred ecccCc-c------------cchhHHHHHHhcCCc-eEEEEeeecCCcccCCCHHHHHHHHHHHHHHhccch
Confidence 554321 1 2244666676666 4 45556666655 5653 3555555554443
No 450
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=40.49 E-value=2.8e+02 Score=25.05 Aligned_cols=99 Identities=11% Similarity=0.049 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEec
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISL 92 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSl 92 (298)
.-.|.++..++++.+.++++..+- ||+-..++..+-+ +++..++. +...=+-....+....+....++.+++.+
T Consensus 185 ~~~~~~~A~~~~~~l~~~~i~~iE----eP~~~~d~~~~~~-L~~~~~~p-ia~dEs~~~~~~~~~~~~~~~~d~v~~d~ 258 (352)
T cd03325 185 GRVSKPMAKDLAKELEPYRLLFIE----EPVLPENVEALAE-IAARTTIP-IATGERLFSRWDFKELLEDGAVDIIQPDI 258 (352)
T ss_pred CCCCHHHHHHHHHhccccCCcEEE----CCCCccCHHHHHH-HHHhCCCC-EEecccccCHHHHHHHHHhCCCCEEecCc
Confidence 345666666666666555544332 5775555443333 33323453 44332222222222223332355555442
Q ss_pred CCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEE
Q 022377 93 DTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKV 129 (298)
Q Consensus 93 dg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i 129 (298)
...+++...++.++.+.++|+ ++..
T Consensus 259 -----------~~~GGit~~~~~~~lA~~~gi-~~~~ 283 (352)
T cd03325 259 -----------SHAGGITELKKIAAMAEAYDV-ALAP 283 (352)
T ss_pred -----------cccCCHHHHHHHHHHHHHcCC-cEec
Confidence 123568888888888888888 6543
No 451
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=40.38 E-value=1.2e+02 Score=28.76 Aligned_cols=82 Identities=13% Similarity=0.136 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCC----CEE--EEcCCccCccccHHHHHHHHhccCCCCcEEEEe-----Cccch-----
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGV----DKI--RLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTT-----NGLTL----- 73 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~----~~v--~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~T-----NG~ll----- 73 (298)
+.+..|+++.+.+.|+.-...++ ..+ ...||-|+--..+.++-+.++++ |+. +.+.- |++++
T Consensus 162 ~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~-GIp-lhLDgARl~nNA~fIk~rE~ 239 (467)
T TIGR02617 162 DFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKY-DIP-VVMDSARFAENAYFIKQREA 239 (467)
T ss_pred CCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHc-CCc-EEEEhHHHHHHhhhhhhcch
Confidence 34678999999999975321111 122 22489999988898999999885 996 88765 67543
Q ss_pred ---HhhHHHHH---HcCCCeEEEecC
Q 022377 74 ---ARKLPKLK---ESGLTSVNISLD 93 (298)
Q Consensus 74 ---~~~~~~l~---~~~~~~v~iSld 93 (298)
+..+..+. -+..|.+++|+.
T Consensus 240 ~a~~~si~eI~rE~~~~aDsvt~sls 265 (467)
T TIGR02617 240 EYKNWSIEQITRETYKYADMLAMSAK 265 (467)
T ss_pred hhcCCCHHHHHHHhhccCCEEEEEcC
Confidence 11233332 246899999885
No 452
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=40.23 E-value=2.4e+02 Score=24.30 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=53.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC--CccCcc---c-----cHHHHHHHHhccCCCCcEEEEeCccchHhh
Q 022377 7 DLTPKPQLLSLNEILRLAYLFVTSGVDKIRLTG--GEPTVR---K-----DIEEACFHLSKLKGLKTLAMTTNGLTLARK 76 (298)
Q Consensus 7 ~~~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GEPll~---~-----~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~ 76 (298)
+|-..+..++.+++.+.+.++.+.|..-|.+.| ..|-.. + .+..+++.+++..++. ++|.|-= .+.
T Consensus 13 SF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~p-lSIDT~~---~~v 88 (257)
T cd00739 13 SFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGELDVL-ISVDTFR---AEV 88 (257)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCc-EEEeCCC---HHH
Confidence 455556678999998888888888988777753 234332 2 1445677777644674 8887643 345
Q ss_pred HHHHHHcCCCeEEEecCCC
Q 022377 77 LPKLKESGLTSVNISLDTL 95 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~ 95 (298)
++.-.+.|.+ +-=|+.+.
T Consensus 89 ~e~al~~G~~-iINdisg~ 106 (257)
T cd00739 89 ARAALEAGAD-IINDVSGG 106 (257)
T ss_pred HHHHHHhCCC-EEEeCCCC
Confidence 5555566877 55566553
No 453
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=40.04 E-value=3.5e+02 Score=26.12 Aligned_cols=16 Identities=6% Similarity=0.111 Sum_probs=9.6
Q ss_pred CCCHhHHHHHHHHHhh
Q 022377 136 GFNDDEICDFVELTRD 151 (298)
Q Consensus 136 ~~n~~~i~~i~~~~~~ 151 (298)
+.+.+.+.++.+++.+
T Consensus 264 ~idl~~l~~is~~v~~ 279 (524)
T PRK12344 264 EEKLKELTEVSRFVSE 279 (524)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 3566666666665544
No 454
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=40.01 E-value=85 Score=27.99 Aligned_cols=52 Identities=27% Similarity=0.453 Sum_probs=38.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCEEEEcC--C-c-cCcccc-HHHHHHHHhccCCC
Q 022377 9 TPKPQLLSLNEILRLAYLFVTSGVDKIRLTG--G-E-PTVRKD-IEEACFHLSKLKGL 61 (298)
Q Consensus 9 ~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--G-E-Pll~~~-~~~ii~~~~~~~~~ 61 (298)
.+++..|+.+.+.++++-+.++|.-.|.||+ | | |...++ ..++++.+++. |+
T Consensus 36 ~ppgg~l~~e~Lr~i~diAekyG~G~i~iT~rqg~ei~~i~~e~~~~v~~~L~~i-G~ 92 (317)
T COG2221 36 TPPGGFLSAETLRKIADIAEKYGDGLIHITSRQGLEIPGISPEDADDVVEELREI-GL 92 (317)
T ss_pred cCCCCccCHHHHHHHHHHHHHhCCCeEEEEecCceEeccCCHHHHHHHHHHHHHc-CC
Confidence 4556889999999999999999988899984 3 3 545554 55777777753 54
No 455
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=39.73 E-value=2.7e+02 Score=24.62 Aligned_cols=100 Identities=21% Similarity=0.259 Sum_probs=66.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHH-cCCCeEE
Q 022377 12 PQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKE-SGLTSVN 89 (298)
Q Consensus 12 ~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~-~~~~~v~ 89 (298)
+.-.+.++..++++.+.+.++..+ =||+-..++.. ++.+++..++ -|.++..+. .+.++.+.+ .+++.|+
T Consensus 185 n~~~~~~~A~~~~~~l~~~~l~~i----EeP~~~~d~~~-~~~L~~~~~i---pIa~~E~~~~~~~~~~~~~~~~~d~v~ 256 (316)
T cd03319 185 NQGWTPEEAVELLRELAELGVELI----EQPVPAGDDDG-LAYLRDKSPL---PIMADESCFSAADAARLAGGGAYDGIN 256 (316)
T ss_pred CCCcCHHHHHHHHHHHHhcCCCEE----ECCCCCCCHHH-HHHHHhcCCC---CEEEeCCCCCHHHHHHHHhcCCCCEEE
Confidence 345778888888888888776666 46887555443 4455553344 356677655 345556555 4467666
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC 131 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~ 131 (298)
+.+- ..++....++....+.++|+ ++.+..
T Consensus 257 ~~~~-----------~~GGi~~~~~~~~~a~~~gi-~~~~~~ 286 (316)
T cd03319 257 IKLM-----------KTGGLTEALRIADLARAAGL-KVMVGC 286 (316)
T ss_pred Eecc-----------ccCCHHHHHHHHHHHHHcCC-CEEEEC
Confidence 5531 13568899999999999999 776654
No 456
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=39.41 E-value=1.7e+02 Score=22.34 Aligned_cols=9 Identities=33% Similarity=0.671 Sum_probs=4.3
Q ss_pred HHHHHcCCC
Q 022377 78 PKLKESGLT 86 (298)
Q Consensus 78 ~~l~~~~~~ 86 (298)
++|++.|++
T Consensus 102 ~~L~~~Gv~ 110 (128)
T cd02072 102 KRFKEMGFD 110 (128)
T ss_pred HHHHHcCCC
Confidence 445554544
No 457
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=39.10 E-value=2.6e+02 Score=25.04 Aligned_cols=76 Identities=14% Similarity=0.216 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCcc------------Cc-cccHH-HHHHHHhccCCCCcEEEEeCc-c-------c
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLTGGEP------------TV-RKDIE-EACFHLSKLKGLKTLAMTTNG-L-------T 72 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~tGGEP------------ll-~~~~~-~ii~~~~~~~~~~~v~i~TNG-~-------l 72 (298)
-+++++.+....+.+.|+..|.|-.|=| |+ +|++. ++++.+++..++. |++=+.. . .
T Consensus 64 ~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~P-VsvKiR~g~~~~~~~~~ 142 (318)
T TIGR00742 64 SDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIP-VTVKHRIGIDPLDSYEF 142 (318)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCC-eEEEEecCCCCcchHHH
Confidence 4568888888887777777777654433 44 45644 9999888754554 6655432 1 1
Q ss_pred hHhhHHHHHHcCCCeEEEe
Q 022377 73 LARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 73 l~~~~~~l~~~~~~~v~iS 91 (298)
+.+.++.+.++|++.|.|+
T Consensus 143 ~~~~~~~l~~~G~~~itvH 161 (318)
T TIGR00742 143 LCDFVEIVSGKGCQNFIVH 161 (318)
T ss_pred HHHHHHHHHHcCCCEEEEe
Confidence 1245677788899976555
No 458
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=38.91 E-value=2.1e+02 Score=23.29 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=39.3
Q ss_pred HHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEE
Q 022377 22 RLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 90 (298)
Q Consensus 22 ~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~i 90 (298)
+.++.+.+.|...|.+.++.+ ....+.++.+++. ++. +.+.++.....+.++.+.. ..+.+.+
T Consensus 71 ~~~~~~~~~g~dgv~vh~~~~---~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~-~~d~i~~ 133 (211)
T cd00429 71 RYIEAFAKAGADIITFHAEAT---DHLHRTIQLIKEL-GMK-AGVALNPGTPVEVLEPYLD-EVDLVLV 133 (211)
T ss_pred HHHHHHHHcCCCEEEECccch---hhHHHHHHHHHHC-CCe-EEEEecCCCCHHHHHHHHh-hCCEEEE
Confidence 346666677888888888754 3445777777774 774 7777754333445555544 3666654
No 459
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=38.64 E-value=2.9e+02 Score=24.66 Aligned_cols=75 Identities=12% Similarity=0.035 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCccC-------------ccccHH-HHHHHHhccCC--CCcEEEEeCccc-----hH
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTGGEPT-------------VRKDIE-EACFHLSKLKG--LKTLAMTTNGLT-----LA 74 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tGGEPl-------------l~~~~~-~ii~~~~~~~~--~~~v~i~TNG~l-----l~ 74 (298)
+++++.+....+.+.|...|.+..|=|- -++++. ++++.+++..+ +. +++=+..-. ..
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~p-VsvKiR~g~~~~~~~~ 151 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLP-VTVKVRLGWDSGERKF 151 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcc-eEEEEECCCCCchHHH
Q ss_pred hhHHHHHHcCCCeEEEe
Q 022377 75 RKLPKLKESGLTSVNIS 91 (298)
Q Consensus 75 ~~~~~l~~~~~~~v~iS 91 (298)
+.++.+.++|++.+.|+
T Consensus 152 ~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 152 EIADAVQQAGATELVVH 168 (312)
T ss_pred HHHHHHHhcCCCEEEEC
No 460
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=38.63 E-value=1.6e+02 Score=24.92 Aligned_cols=73 Identities=15% Similarity=0.051 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCCcc--CccccHHHHHHHHhccCCCCcEEEEeCc-cchHhhHHHHHHc-CCCeEEEe
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTGGEP--TVRKDIEEACFHLSKLKGLKTLAMTTNG-LTLARKLPKLKES-GLTSVNIS 91 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tGGEP--ll~~~~~~ii~~~~~~~~~~~v~i~TNG-~ll~~~~~~l~~~-~~~~v~iS 91 (298)
+.++...++..+.+.|+..|.+++=.+ ....-..++++.+++..++. +..+| ..-.+.++.+.+. |++.+.++
T Consensus 147 ~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~p---via~GGi~~~~di~~~l~~~g~dgv~vg 223 (243)
T cd04731 147 TGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIP---VIASGGAGKPEHFVEAFEEGGADAALAA 223 (243)
T ss_pred cCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCC---EEEeCCCCCHHHHHHHHHhCCCCEEEEe
Confidence 334445566777788988888876221 22112345666665543543 44454 4445677777775 88888875
No 461
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=38.55 E-value=54 Score=27.85 Aligned_cols=39 Identities=15% Similarity=0.306 Sum_probs=28.1
Q ss_pred EEEEcCCccCccccHH-HHHHHHhccCCCCcEEEEeCccchHhh
Q 022377 34 KIRLTGGEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLTLARK 76 (298)
Q Consensus 34 ~v~~tGGEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~ll~~~ 76 (298)
-|.++|-|||+.|..+ .+++.+++. . ..|.|-+.-+.+.
T Consensus 95 IVNvQGDeP~i~p~~I~~~~~~L~~~-~---~~~aTl~~~i~~~ 134 (247)
T COG1212 95 IVNVQGDEPFIEPEVIRAVAENLENS-N---ADMATLAVKITDE 134 (247)
T ss_pred EEEccCCCCCCCHHHHHHHHHHHHhC-C---cceeeeeeecCCH
Confidence 5778999999999976 788888764 2 4566666555443
No 462
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=38.50 E-value=2.8e+02 Score=24.46 Aligned_cols=164 Identities=12% Similarity=0.053 Sum_probs=94.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCEE-EEc-CCccC-cccc-HHHHHHHHhccCC--CCcEEEEeCccchHhhHHHHHHcCCC
Q 022377 13 QLLSLNEILRLAYLFVTSGVDKI-RLT-GGEPT-VRKD-IEEACFHLSKLKG--LKTLAMTTNGLTLARKLPKLKESGLT 86 (298)
Q Consensus 13 ~~l~~e~~~~~i~~~~~~~~~~v-~~t-GGEPl-l~~~-~~~ii~~~~~~~~--~~~v~i~TNG~ll~~~~~~l~~~~~~ 86 (298)
+-.+.|.+..+++.+.+.+.+-| .++ |.-.. ...+ +..+++.+.+... +. |.+...=-.--+.+.+..++|+.
T Consensus 24 N~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~~~VP-V~lHLDHg~~~e~i~~ai~~Gft 102 (285)
T PRK07709 24 NMNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVP-VAIHLDHGSSFEKCKEAIDAGFT 102 (285)
T ss_pred EECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcCCCCc-EEEECCCCCCHHHHHHHHHcCCC
Confidence 45688999999999888774432 232 22222 2222 4466666555334 43 66654421223567777888999
Q ss_pred eEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCC---------HhHHHHHHHHHhhCCCeeE
Q 022377 87 SVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFN---------DDEICDFVELTRDRPINIR 157 (298)
Q Consensus 87 ~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n---------~~~i~~i~~~~~~~g~~~~ 157 (298)
+|.+.--..+-+ .+...+.+.++.++..|+ .|+...=...|.. +.+.++..+|+.+.|++.-
T Consensus 103 SVM~DgS~lp~e--------eNi~~Trevv~~Ah~~gv-~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~L 173 (285)
T PRK07709 103 SVMIDASHHPFE--------ENVETTKKVVEYAHARNV-SVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCL 173 (285)
T ss_pred EEEEeCCCCCHH--------HHHHHHHHHHHHHHHcCC-EEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEE
Confidence 888764332222 235567777888888898 7766552222221 3568999999999999854
Q ss_pred EEeeecCCCCCCcccCCCCHHHHHHHHHHhC
Q 022377 158 FIEFMPFDGNVWNVKKLVPYAEMLDTVVKKF 188 (298)
Q Consensus 158 ~~~~~p~~~~~~~~~~~~~~~e~~~~i~~~~ 188 (298)
-+.+-...+. ....+.+.++ .++.|.+..
T Consensus 174 AvaiGt~HG~-Y~~~p~L~~~-~L~~I~~~~ 202 (285)
T PRK07709 174 APALGSVHGP-YKGEPNLGFA-EMEQVRDFT 202 (285)
T ss_pred EEeecccccC-cCCCCccCHH-HHHHHHHHH
Confidence 4444333221 2223445554 445565544
No 463
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=38.46 E-value=2.4e+02 Score=23.78 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhCCCCEEEEc-CCccCc--cc--------cHHHHHHHHhccCCCCcEEEEe-C-----ccch---Hhh
Q 022377 17 LNEILRLAYLFVTSGVDKIRLT-GGEPTV--RK--------DIEEACFHLSKLKGLKTLAMTT-N-----GLTL---ARK 76 (298)
Q Consensus 17 ~e~~~~~i~~~~~~~~~~v~~t-GGEPll--~~--------~~~~ii~~~~~~~~~~~v~i~T-N-----G~ll---~~~ 76 (298)
.+.+.+.++.+..+|...|.+. |..|-- .. .+.++++++.+ .|+. +.+.+ | +..+ ++.
T Consensus 83 ~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~-~gi~-l~lE~~~~~~~~~~~l~t~~~~ 160 (254)
T TIGR03234 83 REGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDR-IGLT-LLIEPINSFDMPGFFLTTTEQA 160 (254)
T ss_pred HHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCE-EEEEECCcccCCCChhcCHHHH
Confidence 3567788888999999888765 533321 11 14466666776 5985 99986 3 4444 233
Q ss_pred HHHHHHcCCCeEEEecCCC
Q 022377 77 LPKLKESGLTSVNISLDTL 95 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~ 95 (298)
++.+.+.+-+.+.+.+|..
T Consensus 161 ~~li~~v~~~~~~i~~D~~ 179 (254)
T TIGR03234 161 LAVIDDVGRENLKLQYDLY 179 (254)
T ss_pred HHHHHHhCCCCEeEeeehh
Confidence 4444445667789998875
No 464
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=38.17 E-value=22 Score=23.50 Aligned_cols=49 Identities=18% Similarity=0.138 Sum_probs=32.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccc-----cHHHHHHHHhc
Q 022377 9 TPKPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRK-----DIEEACFHLSK 57 (298)
Q Consensus 9 ~~~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~-----~~~~ii~~~~~ 57 (298)
..+...++.+++..+.+-+.++|...+.||...=+.-+ ++.++.+.+.+
T Consensus 15 ~~~~G~i~~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 15 RIPGGRISAEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp B-GGGEEEHHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred eCCCEEECHHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 34556778888888888888888888888865533322 25566665543
No 465
>PF12646 DUF3783: Domain of unknown function (DUF3783); InterPro: IPR016621 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.12 E-value=1.1e+02 Score=19.67 Aligned_cols=25 Identities=28% Similarity=0.602 Sum_probs=16.4
Q ss_pred EEecCCCHhHHHHHHHHHhhCCCee
Q 022377 132 VVMRGFNDDEICDFVELTRDRPINI 156 (298)
Q Consensus 132 vi~~~~n~~~i~~i~~~~~~~g~~~ 156 (298)
++..|.+.+++..+++.+++.|+.+
T Consensus 4 ll~~g~~~~el~~~l~~~r~~~~~~ 28 (58)
T PF12646_consen 4 LLFSGFSGEELDKFLDALRKAGIPI 28 (58)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCCc
Confidence 4455666777777777777766643
No 466
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=38.01 E-value=1.9e+02 Score=22.33 Aligned_cols=72 Identities=17% Similarity=0.208 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEEcC--CccCccccHHHHHHHHhccCCCCcEEEEeCccc-h-Hhh----HHHHH
Q 022377 10 PKPQLLSLNEILRLAYLFVTSGVDKIRLTG--GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLT-L-ARK----LPKLK 81 (298)
Q Consensus 10 ~~~~~l~~e~~~~~i~~~~~~~~~~v~~tG--GEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~l-l-~~~----~~~l~ 81 (298)
.-+...++|++. +.+.+.++.-|.+|. |. -...+.++++.+++. ++..+.+.--|.. + ++. .++|.
T Consensus 34 ~LG~~v~~e~~v---~aa~~~~adiVglS~l~~~--~~~~~~~~~~~l~~~-gl~~~~vivGG~~vi~~~d~~~~~~~l~ 107 (134)
T TIGR01501 34 NLGVLSPQEEFI---KAAIETKADAILVSSLYGH--GEIDCKGLRQKCDEA-GLEGILLYVGGNLVVGKQDFPDVEKRFK 107 (134)
T ss_pred ECCCCCCHHHHH---HHHHHcCCCEEEEeccccc--CHHHHHHHHHHHHHC-CCCCCEEEecCCcCcChhhhHHHHHHHH
Confidence 334556777764 444556677777764 42 222355777777773 6543445556653 2 222 34688
Q ss_pred HcCCCe
Q 022377 82 ESGLTS 87 (298)
Q Consensus 82 ~~~~~~ 87 (298)
+.|++.
T Consensus 108 ~~Gv~~ 113 (134)
T TIGR01501 108 EMGFDR 113 (134)
T ss_pred HcCCCE
Confidence 888773
No 467
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=38.01 E-value=2e+02 Score=23.98 Aligned_cols=94 Identities=18% Similarity=0.208 Sum_probs=52.8
Q ss_pred cCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCe---EEEecCCCCHHhhhhhcCCC--cHHHHHHH
Q 022377 42 PTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTS---VNISLDTLVPAKFEFLTRRK--GHEKVMES 115 (298)
Q Consensus 42 Pll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~---v~iSldg~~~~~~~~ir~~~--~~~~v~~~ 115 (298)
|.+.|+..++++.+++. |.. +.|.|-|... .+.+.+.. |++. ..+..+. . ..-.++-+.. .-.++...
T Consensus 76 ~~l~~ga~elv~~lk~~-G~~-v~iiSgg~~~lv~~ia~~l--g~d~~~an~l~~~d-G-~ltG~v~g~~~~~~~K~~~l 149 (212)
T COG0560 76 LRLTPGAEELVAALKAA-GAK-VVIISGGFTFLVEPIAERL--GIDYVVANELEIDD-G-KLTGRVVGPICDGEGKAKAL 149 (212)
T ss_pred CcCCccHHHHHHHHHHC-CCE-EEEEcCChHHHHHHHHHHh--CCchheeeEEEEeC-C-EEeceeeeeecCcchHHHHH
Confidence 99999999999999994 985 8888888543 33332222 3432 1222221 0 0011111111 12455555
Q ss_pred HHHHHHcCCCCEEEEEEEecCCCHhHH
Q 022377 116 INAAIEVGYNPVKVNCVVMRGFNDDEI 142 (298)
Q Consensus 116 i~~l~~~g~~~v~i~~vi~~~~n~~~i 142 (298)
-+.+.+.|+ ...-.+-+..+.|+--+
T Consensus 150 ~~~~~~~g~-~~~~~~a~gDs~nDlpm 175 (212)
T COG0560 150 RELAAELGI-PLEETVAYGDSANDLPM 175 (212)
T ss_pred HHHHHHcCC-CHHHeEEEcCchhhHHH
Confidence 566677888 66656666665554433
No 468
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=37.88 E-value=2.1e+02 Score=23.56 Aligned_cols=64 Identities=20% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEE
Q 022377 21 LRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 90 (298)
Q Consensus 21 ~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~i 90 (298)
.+.++.+.+.|+..|.+.+|.+ ....+.++.+++. ++. +.+.++.....+.++.+.. ..+.+.+
T Consensus 74 ~~~i~~~~~~g~d~v~vh~~~~---~~~~~~~~~~~~~-~~~-~g~~~~~~t~~e~~~~~~~-~~d~i~~ 137 (220)
T PRK05581 74 DRYVPDFAKAGADIITFHVEAS---EHIHRLLQLIKSA-GIK-AGLVLNPATPLEPLEDVLD-LLDLVLL 137 (220)
T ss_pred HHHHHHHHHcCCCEEEEeeccc---hhHHHHHHHHHHc-CCE-EEEEECCCCCHHHHHHHHh-hCCEEEE
No 469
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=37.72 E-value=2.5e+02 Score=24.48 Aligned_cols=85 Identities=16% Similarity=0.147 Sum_probs=58.6
Q ss_pred ccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhc-CCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhH-HHHHHH
Q 022377 70 GLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLT-RRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDE-ICDFVE 147 (298)
Q Consensus 70 G~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir-~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~-i~~i~~ 147 (298)
|-.-++.++.+++-..+.+.| +|+ +-.+-..| +..+++..++|++.+.+.....+.+.--+.+..|..+ ++++.+
T Consensus 187 Gp~~~~~l~~i~e~~P~v~ii--~GP-pty~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHHllRD~~y~e~l~~l~~ 263 (304)
T COG2248 187 GPINDEALEFILEKRPDVLII--GGP-PTYLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHHLLRDKNYREFLEELFE 263 (304)
T ss_pred CCCccHHHHHHHhcCCCEEEe--cCC-chhHhhhhcChHHHHHHHHHHHHHHHhCcceEEEeehhhcCCCHHHHHHHHHh
Confidence 433467788888876774443 565 33333333 3356999999999999976546677766666567765 788888
Q ss_pred HHhhCCCeeE
Q 022377 148 LTRDRPINIR 157 (298)
Q Consensus 148 ~~~~~g~~~~ 157 (298)
.+.+.|+.+.
T Consensus 264 ~~~~~GV~v~ 273 (304)
T COG2248 264 RAEKAGVEVA 273 (304)
T ss_pred hHhhcCceee
Confidence 8888888653
No 470
>PRK10637 cysG siroheme synthase; Provisional
Probab=37.70 E-value=1.1e+02 Score=28.98 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=39.5
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCc
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNG 70 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG 70 (298)
.+.+++.+.+.+....|-..+.++.|+|+++.-...+++.+.+. ++. +.+...-
T Consensus 277 ~~~~~~~~~i~~~~~~G~~Vv~L~sGDP~~yg~~~~l~~~l~~~-gi~-vevVPGI 330 (457)
T PRK10637 277 VPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCNA-GIP-FSVVPGI 330 (457)
T ss_pred cCHHHHHHHHHHHHhCCCEEEEEeCCCccccccHHHHHHHHHhC-CCC-EEEECCH
Confidence 34677766665555566556777899999998888888888774 885 8786543
No 471
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=37.66 E-value=1.6e+02 Score=25.31 Aligned_cols=22 Identities=5% Similarity=0.016 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHhCCCCEEEEc
Q 022377 17 LNEILRLAYLFVTSGVDKIRLT 38 (298)
Q Consensus 17 ~e~~~~~i~~~~~~~~~~v~~t 38 (298)
.+.+.+.++.+..+|+..|.+.
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~ 105 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFH 105 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC
Confidence 3444555555555555555554
No 472
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=37.66 E-value=1.2e+02 Score=29.54 Aligned_cols=49 Identities=12% Similarity=0.076 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeEE
Q 022377 109 HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIRF 158 (298)
Q Consensus 109 ~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~~ 158 (298)
+....+-|+.++++|+ ++.+.+--.+.-++.|++.+.+++.+.|+.+..
T Consensus 387 ~~NL~~Hi~n~~~fg~-pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~~~v 435 (587)
T PRK13507 387 CANLLHHIGTVKKSGI-NPVVCINAFYTDTHAEIAIVRRLAEQAGARVAV 435 (587)
T ss_pred HHHHHHHHHHHHHcCC-CeEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 4556666777778999 877776655545788999999999999986544
No 473
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=37.39 E-value=2.4e+02 Score=23.49 Aligned_cols=102 Identities=21% Similarity=0.213 Sum_probs=61.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHH-cCCCeEE
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKE-SGLTSVN 89 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~-~~~~~v~ 89 (298)
.+.-.+.++..++++.+.++++..+- ||+-..++..+ +.+++..++. +...-.-.. ...+..+.+ ..++.++
T Consensus 101 aN~~~~~~~a~~~~~~l~~~~i~~iE----eP~~~~d~~~~-~~L~~~~~~p-Ia~dEs~~~-~~~~~~~~~~~~~d~~~ 173 (229)
T cd00308 101 ANGAWTPKEAIRLIRALEKYGLAWIE----EPCAPDDLEGY-AALRRRTGIP-IAADESVTT-VDDALEALELGAVDILQ 173 (229)
T ss_pred CCCCCCHHHHHHHHHHhhhcCCCeEE----CCCCccCHHHH-HHHHhhCCCC-EEeCCCCCC-HHHHHHHHHcCCCCEEe
Confidence 34557888888888888877655555 89876665443 3344434554 554211111 233333444 3466555
Q ss_pred EecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE
Q 022377 90 ISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC 131 (298)
Q Consensus 90 iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~ 131 (298)
+.+- ..+++...++..+.+.++|+ ++.+..
T Consensus 174 ~k~~-----------~~GGi~~~~~i~~~a~~~gi-~~~~~~ 203 (229)
T cd00308 174 IKPT-----------RVGGLTESRRAADLAEAFGI-RVMVHG 203 (229)
T ss_pred cCcc-----------ccCCHHHHHHHHHHHHHcCC-EEeecC
Confidence 5432 13568889999999999998 665443
No 474
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=37.28 E-value=3.2e+02 Score=24.82 Aligned_cols=138 Identities=16% Similarity=0.099 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcCC-ccCccccHHHHHHHHhcc--CCCCcEEEEeCccch-Hh---hHHHHHHcCCCeE
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTGG-EPTVRKDIEEACFHLSKL--KGLKTLAMTTNGLTL-AR---KLPKLKESGLTSV 88 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tGG-EPll~~~~~~ii~~~~~~--~~~~~v~i~TNG~ll-~~---~~~~l~~~~~~~v 88 (298)
+.++..+.+.+..+.|.+.+.+.+| ...+. .-.+.++.+++. .++. +.+.-|+... ++ .++.+.+.++.++
T Consensus 143 ~~~~~~~~a~~~~~~Gf~~~Kik~~~~~~~~-~di~~i~~vR~~~G~~~~-l~vDan~~~~~~~A~~~~~~l~~~~l~~i 220 (368)
T cd03329 143 SPEAYADFAEECKALGYRAIKLHPWGPGVVR-RDLKACLAVREAVGPDMR-LMHDGAHWYSRADALRLGRALEELGFFWY 220 (368)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCchhHH-HHHHHHHHHHHHhCCCCe-EEEECCCCcCHHHHHHHHHHhhhcCCCeE
Confidence 7788888888888889999988754 33222 345677777763 3564 8888898654 33 3455666667766
Q ss_pred EEecCCCCHHhhhhhcCCC--------cHHHHHHHHHHHHHcCCCCEEEEEEEec-CCCHhHHHHHHHHHhhCCCeeE
Q 022377 89 NISLDTLVPAKFEFLTRRK--------GHEKVMESINAAIEVGYNPVKVNCVVMR-GFNDDEICDFVELTRDRPINIR 157 (298)
Q Consensus 89 ~iSldg~~~~~~~~ir~~~--------~~~~v~~~i~~l~~~g~~~v~i~~vi~~-~~n~~~i~~i~~~~~~~g~~~~ 157 (298)
-=.+...+-+.+..++... +.....+.++.+.+.+. -=.++.-+++ | -..+..++++.+...|+.+.
T Consensus 221 EeP~~~~d~~~~~~l~~~~~ipIa~~E~~~~~~~~~~~~i~~~a-~d~v~~d~~~~G-Git~~~~ia~~a~~~gi~~~ 296 (368)
T cd03329 221 EDPLREASISSYRWLAEKLDIPILGTEHSRGALESRADWVLAGA-TDFLRADVNLVG-GITGAMKTAHLAEAFGLDVE 296 (368)
T ss_pred eCCCCchhHHHHHHHHhcCCCCEEccCcccCcHHHHHHHHHhCC-CCEEecCccccC-CHHHHHHHHHHHHHcCCEEE
Confidence 6444332334455555321 11111333444444443 1122332222 2 36778888888888888653
No 475
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=37.24 E-value=1.1e+02 Score=23.48 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.4
Q ss_pred ccccHHHHHHHHhccCCCCcEEEEeCcc
Q 022377 44 VRKDIEEACFHLSKLKGLKTLAMTTNGL 71 (298)
Q Consensus 44 l~~~~~~ii~~~~~~~~~~~v~i~TNG~ 71 (298)
+.|++.++++++++. |+. +.|.||+.
T Consensus 28 ~~~g~~~~l~~Lk~~-g~~-~~I~Sn~~ 53 (147)
T TIGR01656 28 LRPGAVPALLTLRAA-GYT-VVVVTNQS 53 (147)
T ss_pred EcCChHHHHHHHHHC-CCE-EEEEeCCC
Confidence 467899999999984 995 99999975
No 476
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=37.08 E-value=2.9e+02 Score=24.88 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccC-------------ccccHH-HHHHHHhccCCCCcEEE----EeCccc----
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLTGGEPT-------------VRKDIE-EACFHLSKLKGLKTLAM----TTNGLT---- 72 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~tGGEPl-------------l~~~~~-~ii~~~~~~~~~~~v~i----~TNG~l---- 72 (298)
-+++++.+....+.+.|...|.+..|=|. -++++. ++++.+++.-++. +++ ...+..
T Consensus 74 ~~p~~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~p-VsvKiR~g~~~~~t~~~ 152 (333)
T PRK11815 74 SDPADLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIP-VTVKHRIGIDDQDSYEF 152 (333)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCc-eEEEEEeeeCCCcCHHH
Confidence 35688888888888888888877655543 345555 8889888743443 443 222211
Q ss_pred hHhhHHHHHHcCCCeEEEe
Q 022377 73 LARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 73 l~~~~~~l~~~~~~~v~iS 91 (298)
+.+.+..+.++|++.+.|+
T Consensus 153 ~~~~~~~l~~aG~d~i~vh 171 (333)
T PRK11815 153 LCDFVDTVAEAGCDTFIVH 171 (333)
T ss_pred HHHHHHHHHHhCCCEEEEc
Confidence 1345677888899988876
No 477
>PRK08123 histidinol-phosphatase; Reviewed
Probab=36.89 E-value=1.2e+02 Score=26.20 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=43.2
Q ss_pred cHHHHHHHHhccCCCCcEEEEeCccch---------HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHH
Q 022377 47 DIEEACFHLSKLKGLKTLAMTTNGLTL---------ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMES 115 (298)
Q Consensus 47 ~~~~ii~~~~~~~~~~~v~i~TNG~ll---------~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~ 115 (298)
.+.++++.+.+. |.. +.|+|+|... .+.++.+++.|+. |.++-|+-.++.. +..|+.+++-
T Consensus 198 ~~~~il~~~~~~-g~~-lEINtsgl~~~~~~~~yP~~~il~~~~e~g~~-itlgSDAH~~~~v-----g~~f~~a~~~ 267 (270)
T PRK08123 198 LIEDILALIKKR-GYE-LDFNTAGLRKPYCGEPYPPGEIITLAKKLGIP-LVYGSDAHSAADV-----GRGYDTIEQK 267 (270)
T ss_pred HHHHHHHHHHHc-CCE-EEEEchhhcCCCCCCCCCcHHHHHHHHHcCCC-EEEeCCCCCHHHH-----HhhHHHHHHH
Confidence 466888888884 885 9999987531 2357888888887 8899998777643 2236655543
No 478
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=36.75 E-value=67 Score=31.03 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhhCCCeeE
Q 022377 109 HEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRDRPINIR 157 (298)
Q Consensus 109 ~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~~g~~~~ 157 (298)
+....+-|+.++++|+ ++.+-.--.+.-+.+|++.+.+++.++|+.+.
T Consensus 357 ~~NL~rHIeNik~fGv-pvVVAIN~F~tDT~aEi~~I~~~~~~~Gv~~a 404 (557)
T PF01268_consen 357 FANLERHIENIKKFGV-PVVVAINRFPTDTDAEIELIRELCEELGVRAA 404 (557)
T ss_dssp HHHHHHHHHHHHCTT---EEEEEE--TTS-HHHHHHHHHHCCCCCEEEE
T ss_pred HHHHHHHHHHHHhcCC-CeEEEecCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 6666666777777899 77766655654578899999999999998643
No 479
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=36.58 E-value=2.7e+02 Score=23.73 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=39.7
Q ss_pred EEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCCCHhHHHHHHHHHhh
Q 022377 88 VNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGFNDDEICDFVELTRD 151 (298)
Q Consensus 88 v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~n~~~i~~i~~~~~~ 151 (298)
+.+|-+.++ +.++++.+++-+..+.+.|. . .+.+++++ .+.+++..++++..+
T Consensus 119 vI~SyH~F~--------~TP~~~~i~~~l~km~~~~a-D-ivKiAvm~-~~~~DvL~ll~~~~~ 171 (231)
T COG0710 119 VIVSYHDFE--------KTPPLEEIIERLDKMESLGA-D-IVKIAVMP-QSKEDVLDLLEATRE 171 (231)
T ss_pred EEEEeccCC--------CCCcHHHHHHHHHHHHhhCC-C-eEEEEecC-CCHHHHHHHHHHHHh
Confidence 566655442 34678999999999999986 2 34667788 689998888888875
No 480
>PRK09989 hypothetical protein; Provisional
Probab=36.55 E-value=2.7e+02 Score=23.69 Aligned_cols=138 Identities=13% Similarity=0.094 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhCCCCEEEEcCCc-cC----------ccccHHHHHHHHhccCCCCcEEEEe------CccchH--h-h
Q 022377 17 LNEILRLAYLFVTSGVDKIRLTGGE-PT----------VRKDIEEACFHLSKLKGLKTLAMTT------NGLTLA--R-K 76 (298)
Q Consensus 17 ~e~~~~~i~~~~~~~~~~v~~tGGE-Pl----------l~~~~~~ii~~~~~~~~~~~v~i~T------NG~ll~--~-~ 76 (298)
.+.+.+.++.+..+|.+.|.+..|- |- +...+.++.+.+.+ .|+. +.+.. |++.+. + .
T Consensus 84 ~~~l~~~i~~A~~lg~~~v~v~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~-~gv~-l~lE~l~~~~~~~~~~~~~~~~ 161 (258)
T PRK09989 84 RADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNLRYAADRFAP-HGKR-ILVEALSPGVKPHYLFSSQYQA 161 (258)
T ss_pred HHHHHHHHHHHHHhCcCEEEECccCCCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCE-EEEEeCCCCCCCCCccCCHHHH
Confidence 3557788888889999888765432 21 11224456666666 4884 77765 454452 2 3
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEE---EEecCCCHhHHHHHHHHHhhCC
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNC---VVMRGFNDDEICDFVELTRDRP 153 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~---vi~~~~n~~~i~~i~~~~~~~g 153 (298)
.+.+.+.+-+.+.+-+|.... . +.+.++... ++...+. +..+.+.- ...+|.-.-++.++++.+.+.|
T Consensus 162 ~~ll~~v~~~~v~l~lD~~h~----~-~~~~~~~~~---i~~~~~r-i~hvHi~D~~~~~~pG~G~id~~~i~~al~~~G 232 (258)
T PRK09989 162 LAIVEEVARDNVFIQLDTFHA----Q-KVDGNLTHL---IRDYAGK-YAHVQIAGLPDRHEPDDGEINYPWLFRLFDEVG 232 (258)
T ss_pred HHHHHHcCCCCeEEEeehHhH----H-HcCCCHHHH---HHHhhhh-EEEEEECCCCCCCCCCCCCcCHHHHHHHHHHcC
Confidence 444444455678888887532 1 222333333 3333332 21233321 0123333345788888888888
Q ss_pred Ce-eEEEeeecCC
Q 022377 154 IN-IRFIEFMPFD 165 (298)
Q Consensus 154 ~~-~~~~~~~p~~ 165 (298)
.+ ...+++.|.+
T Consensus 233 y~g~is~E~~~~~ 245 (258)
T PRK09989 233 YQGWIGCEYKPRG 245 (258)
T ss_pred CCeEEEEEEeeCC
Confidence 74 3345566654
No 481
>PRK06740 histidinol-phosphatase; Validated
Probab=36.21 E-value=2.4e+02 Score=25.37 Aligned_cols=68 Identities=16% Similarity=0.129 Sum_probs=44.6
Q ss_pred ccHHHHHHHHhccCCCCcEEEEeC-ccc-------h-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHH
Q 022377 46 KDIEEACFHLSKLKGLKTLAMTTN-GLT-------L-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESI 116 (298)
Q Consensus 46 ~~~~~ii~~~~~~~~~~~v~i~TN-G~l-------l-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i 116 (298)
+.+.++++.+.+. |+. +.|+|. |.. . .+.++.+++.|+. |.++-|+-.++.-. ..|+ +++
T Consensus 239 ~~~~~I~~a~~~~-g~~-lEINt~~~~r~~~~e~yP~~~il~~~~e~Gv~-~tlgSDAH~p~~VG-----~~~~---~a~ 307 (331)
T PRK06740 239 SYYKEIARALVET-NTA-TEINAGLYYRYPVREMCPSPLFLQVLAKHEVP-ITLSSDAHYPNDLG-----KYVE---ENV 307 (331)
T ss_pred HHHHHHHHHHHHc-CCE-EEEECccccCCCCCCCCcCHHHHHHHHHCCCe-EEEeeCCCCHHHHH-----hHHH---HHH
Confidence 4566888888874 875 888887 321 1 2456777887876 88888887765321 1233 446
Q ss_pred HHHHHcCC
Q 022377 117 NAAIEVGY 124 (298)
Q Consensus 117 ~~l~~~g~ 124 (298)
+.+++.|+
T Consensus 308 ~~l~~~G~ 315 (331)
T PRK06740 308 KTLRNHGV 315 (331)
T ss_pred HHHHHcCC
Confidence 67777888
No 482
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=36.15 E-value=4e+02 Score=25.63 Aligned_cols=52 Identities=15% Similarity=0.152 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCCEEEEcCCccCc--cccH-HHHHHHHhccCCCCcEEE-EeCccchHh
Q 022377 22 RLAYLFVTSGVDKIRLTGGEPTV--RKDI-EEACFHLSKLKGLKTLAM-TTNGLTLAR 75 (298)
Q Consensus 22 ~~i~~~~~~~~~~v~~tGGEPll--~~~~-~~ii~~~~~~~~~~~v~i-~TNG~ll~~ 75 (298)
..++.+++.|...|.|+. |=.- .+++ .++++.+.+. |...+.+ .|.|.+.+.
T Consensus 213 ~~V~~Ak~~G~~~v~f~~-EDa~Rtd~efl~~~~~~a~~~-Gad~I~l~DTvG~~tP~ 268 (503)
T PLN03228 213 SSIRYAKSLGFHDIQFGC-EDGGRSDKEFLCKILGEAIKA-GATSVGIADTVGINMPH 268 (503)
T ss_pred HHHHHHHHcCCceEEecc-ccccccCHHHHHHHHHHHHhc-CCCEEEEecCCCCCCHH
Confidence 344445555543344432 2221 2333 3666666553 5443332 477766643
No 483
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=36.11 E-value=2.4e+02 Score=24.82 Aligned_cols=73 Identities=21% Similarity=0.327 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCEEEEc-----C---CccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcC
Q 022377 14 LLSLNEILRLAYLFVTSGVDKIRLT-----G---GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESG 84 (298)
Q Consensus 14 ~l~~e~~~~~i~~~~~~~~~~v~~t-----G---GEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~ 84 (298)
.-++|+..+++++ .|+..+.++ | |+|-|+++..+-++ +..++. + +.--|+-+ ++.+++..+.|
T Consensus 155 yT~peeA~~Fv~~---TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~---~~~~iP-L-VLHGgSG~~~e~~~~ai~~G 226 (285)
T PRK07709 155 YADPAECKHLVEA---TGIDCLAPALGSVHGPYKGEPNLGFAEMEQVR---DFTGVP-L-VLHGGTGIPTADIEKAISLG 226 (285)
T ss_pred CCCHHHHHHHHHH---hCCCEEEEeecccccCcCCCCccCHHHHHHHH---HHHCCC-E-EEeCCCCCCHHHHHHHHHcC
Confidence 3578888777764 466655543 3 78888877553333 223564 4 33445555 57899999999
Q ss_pred CCeEEEecCC
Q 022377 85 LTSVNISLDT 94 (298)
Q Consensus 85 ~~~v~iSldg 94 (298)
+..|+|+-+-
T Consensus 227 i~KiNi~T~l 236 (285)
T PRK07709 227 TSKINVNTEN 236 (285)
T ss_pred CeEEEeChHH
Confidence 9999998654
No 484
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=36.05 E-value=1.1e+02 Score=28.07 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=48.2
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEE------cCCccCccccHHHHHHHHhccCCCCcEEEE-----eCccch
Q 022377 11 KPQLLSLNEILRLAYLFVTSGVDKIRL------TGGEPTVRKDIEEACFHLSKLKGLKTLAMT-----TNGLTL 73 (298)
Q Consensus 11 ~~~~l~~e~~~~~i~~~~~~~~~~v~~------tGGEPll~~~~~~ii~~~~~~~~~~~v~i~-----TNG~ll 73 (298)
=+..++.+.+.++|++.....+..|++ .||-|-....+.++-+.+++. ++. +.+. -|++++
T Consensus 165 FKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky-~ip-vv~Da~RfaENaYFI 236 (471)
T COG3033 165 FKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKY-DIP-VVMDAARFAENAYFI 236 (471)
T ss_pred CCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHc-CCc-EEeehhhhhhhhhhh
Confidence 346799999999999887777776665 389999999988888888884 886 7655 477766
No 485
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=36.04 E-value=2e+02 Score=22.05 Aligned_cols=68 Identities=12% Similarity=0.094 Sum_probs=46.6
Q ss_pred HHHHHHHhCCCCEEEEcCC---------------ccCccccHH-HHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCC
Q 022377 22 RLAYLFVTSGVDKIRLTGG---------------EPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGL 85 (298)
Q Consensus 22 ~~i~~~~~~~~~~v~~tGG---------------EPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~ 85 (298)
++++.+++.++..|.+..| -|-|..|+. ++++.+++. |+. +-+-.... .++.+ .+...
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~-Gir-v~ay~~~~-~d~~~---~~~HP 77 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHER-GIR-VPAYFDFS-WDEDA---AERHP 77 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHC-CCE-EEEEEeee-cChHH---HHhCC
Confidence 4566667778888777432 266667766 999999994 996 66655554 44333 34568
Q ss_pred CeEEEecCCC
Q 022377 86 TSVNISLDTL 95 (298)
Q Consensus 86 ~~v~iSldg~ 95 (298)
++..++-+|-
T Consensus 78 eW~~~~~~G~ 87 (132)
T PF14871_consen 78 EWFVRDADGR 87 (132)
T ss_pred ceeeECCCCC
Confidence 9999998884
No 486
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=36.02 E-value=1.6e+02 Score=22.51 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhCCCCEEE-EcCCccCcc-ccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHH
Q 022377 17 LNEILRLAYLFVTSGVDKIR-LTGGEPTVR-KDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKL 80 (298)
Q Consensus 17 ~e~~~~~i~~~~~~~~~~v~-~tGGEPll~-~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l 80 (298)
.+.+.++++.+.+.|.+.+. +.||-+... .++.+..+.+++. |+. .+-+-|+-+.+.+..|
T Consensus 64 ~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~-Gv~--~vf~pgt~~~~i~~~l 126 (128)
T cd02072 64 EIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEM-GFD--RVFAPGTPPEEAIADL 126 (128)
T ss_pred HHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHc-CCC--EEECcCCCHHHHHHHH
Confidence 34455566666666553333 335555433 3344555555553 653 4445555444444433
No 487
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=35.83 E-value=83 Score=28.49 Aligned_cols=98 Identities=17% Similarity=0.140 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCcc--------------------CccccHHHHHHHHhccC--CCCcEEEEeCccc
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLTGGEP--------------------TVRKDIEEACFHLSKLK--GLKTLAMTTNGLT 72 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~tGGEP--------------------ll~~~~~~ii~~~~~~~--~~~~v~i~TNG~l 72 (298)
++.+++..+.+.+.+.|+..|.++++-+ -+++--.+.+..+++.. ++. -+.+.|..
T Consensus 222 ~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ip--Iig~GGI~ 299 (344)
T PRK05286 222 LSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLP--IIGVGGID 299 (344)
T ss_pred CCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCC--EEEECCCC
Confidence 5666777777777777877777776421 01111234555555432 232 23344444
Q ss_pred hHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHH
Q 022377 73 LARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIE 121 (298)
Q Consensus 73 l~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~ 121 (298)
..+.+.++..+|.+.|+|.= .-.+ .+..-+.++.+.++.+.+
T Consensus 300 s~eda~e~l~aGAd~V~v~~----~~~~---~gP~~~~~i~~~L~~~l~ 341 (344)
T PRK05286 300 SAEDAYEKIRAGASLVQIYS----GLIY---EGPGLVKEIVRGLARLLR 341 (344)
T ss_pred CHHHHHHHHHcCCCHHHHHH----HHHH---hCchHHHHHHHHHHHHHH
Confidence 44555555557777665541 1110 122225666666665544
No 488
>PRK01060 endonuclease IV; Provisional
Probab=35.76 E-value=2.8e+02 Score=23.77 Aligned_cols=125 Identities=13% Similarity=0.153 Sum_probs=62.9
Q ss_pred HHHHHHHHHhCCCCEEEEcCCccCcc------cc-HHHHHHHHhccCCCCc--EEEEe----CccchH------------
Q 022377 20 ILRLAYLFVTSGVDKIRLTGGEPTVR------KD-IEEACFHLSKLKGLKT--LAMTT----NGLTLA------------ 74 (298)
Q Consensus 20 ~~~~i~~~~~~~~~~v~~tGGEPll~------~~-~~~ii~~~~~~~~~~~--v~i~T----NG~ll~------------ 74 (298)
+...++.+.++|...|-|..+.|... ++ +.++-+.+.+ .|+.- +++.. |-...+
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~-~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~ 92 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEK-YGISPEDILVHAPYLINLGNPNKEILEKSRDFLI 92 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHH-cCCCCCceEEecceEecCCCCCHHHHHHHHHHHH
Confidence 56678888899999999987777432 22 2344444545 47641 22211 111111
Q ss_pred hhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHH--cCCCCEEEEEEEecC----CCHhHHHHHHHH
Q 022377 75 RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIE--VGYNPVKVNCVVMRG----FNDDEICDFVEL 148 (298)
Q Consensus 75 ~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~--~g~~~v~i~~vi~~~----~n~~~i~~i~~~ 148 (298)
+.++...+.|...|.+..-...+. .+....++...+.++.+.+ .|+ .+.+..+-..+ .+.+++.++++.
T Consensus 93 ~~i~~A~~lga~~vv~h~G~~~~~----~~~~~~~~~~~e~l~~l~~~~~gv-~l~iEn~~~~~~~~~~~~~~~~~l~~~ 167 (281)
T PRK01060 93 QEIERCAALGAKLLVFHPGSHLGD----IDEEDCLARIAESLNEALDKTQGV-TIVLENTAGQGSELGRRFEELARIIDG 167 (281)
T ss_pred HHHHHHHHcCCCEEEEcCCcCCCC----CcHHHHHHHHHHHHHHHHhcCCCC-EEEEecCCCCCCcccCCHHHHHHHHHh
Confidence 112333445777777753321100 0011247788888887754 355 45554432211 123455555554
Q ss_pred Hh
Q 022377 149 TR 150 (298)
Q Consensus 149 ~~ 150 (298)
+.
T Consensus 168 v~ 169 (281)
T PRK01060 168 VE 169 (281)
T ss_pred cC
Confidence 43
No 489
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=35.58 E-value=2.3e+02 Score=24.89 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhCCCCEEEE
Q 022377 18 NEILRLAYLFVTSGVDKIRL 37 (298)
Q Consensus 18 e~~~~~i~~~~~~~~~~v~~ 37 (298)
+++..+++.+.+.|+..|.+
T Consensus 169 ~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 169 TDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred hhHHHHHHHHHHcCCCEEEE
Confidence 34445555555555554443
No 490
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=35.58 E-value=2e+02 Score=24.29 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCCEEEEc--CCccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEe
Q 022377 19 EILRLAYLFVTSGVDKIRLT--GGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 19 ~~~~~i~~~~~~~~~~v~~t--GGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iS 91 (298)
+...+++.+.+.|+..+.++ .++...++...++++.+++..+++ + +...|..-.+.++.+...|.+.+.++
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~p-v-~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEVFIP-L-TVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhCCCC-E-EEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 34445555667788877664 223334444557777776644553 3 33445444677888888888887776
No 491
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=35.44 E-value=1.1e+02 Score=27.33 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEcC---CccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHc-CCCeEEE
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLTG---GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKES-GLTSVNI 90 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~tG---GEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~-~~~~v~i 90 (298)
+.++...++..+.+.|+..|+++| .|-.-.+--.+.+..+++ .+. +-+.-||-.. .+.+.++.+. |++.|.|
T Consensus 136 ~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~--~~~-ipvi~NGdI~s~~d~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 136 SPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKE--ALP-IPVIANGDIFSPEDAERMLEQTGADGVMI 212 (309)
T ss_dssp -CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHH--C-T-SEEEEESS--SHHHHHHHCCCH-SSEEEE
T ss_pred chhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhh--ccc-ceeEEcCccCCHHHHHHHHHhcCCcEEEE
Q ss_pred e
Q 022377 91 S 91 (298)
Q Consensus 91 S 91 (298)
.
T Consensus 213 g 213 (309)
T PF01207_consen 213 G 213 (309)
T ss_dssp S
T ss_pred c
No 492
>PRK08609 hypothetical protein; Provisional
Probab=35.43 E-value=3.6e+02 Score=26.35 Aligned_cols=69 Identities=17% Similarity=0.158 Sum_probs=45.7
Q ss_pred ccccHHHHHHHHhccCCCCcEEEEeCccch---HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHH
Q 022377 44 VRKDIEEACFHLSKLKGLKTLAMTTNGLTL---ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAI 120 (298)
Q Consensus 44 l~~~~~~ii~~~~~~~~~~~v~i~TNG~ll---~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~ 120 (298)
...++.++++.+.+. |+. +.|+|++... .+.++.+.+.|+. +.|+=|+.+++. +...-.++..++
T Consensus 477 ~~~d~~~i~~~a~~~-G~~-lEINa~~~r~~~~~~~~~~~~e~Gv~-i~igSDAH~~~~---------l~~~~~~v~~ar 544 (570)
T PRK08609 477 YDVNIDQLIELAKET-NTA-LELNANPNRLDLSAEHLKKAQEAGVK-LAINTDAHHTEM---------LDDMKYGVATAR 544 (570)
T ss_pred chHHHHHHHHHHHHh-CCE-EEEcCCccccCccHHHHHHHHHcCCE-EEEECCCCChhh---------hCcHHHHHHHHH
Confidence 344566777777774 875 8888877643 3567888888875 777777765542 223445666677
Q ss_pred HcCC
Q 022377 121 EVGY 124 (298)
Q Consensus 121 ~~g~ 124 (298)
+.|+
T Consensus 545 ~~~~ 548 (570)
T PRK08609 545 KGWI 548 (570)
T ss_pred HcCC
Confidence 7776
No 493
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=35.42 E-value=1.6e+02 Score=25.98 Aligned_cols=72 Identities=15% Similarity=0.269 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhCCCCEEEEc-C---CccCccccHH-HHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEE
Q 022377 16 SLNEILRLAYLFVTSGVDKIRLT-G---GEPTVRKDIE-EACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNI 90 (298)
Q Consensus 16 ~~e~~~~~i~~~~~~~~~~v~~t-G---GEPll~~~~~-~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~i 90 (298)
++++..++++ +.|+..+.++ | |----.|.+- ++++.+++..++. +.+---.-+-++.+++..+.|+..|+|
T Consensus 154 ~peea~~Fv~---~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~iP-LVlHGgSG~~~e~~~~ai~~Gi~KiNi 229 (282)
T TIGR01858 154 DPQEAKEFVE---ATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVDVP-LVLHGASDVPDEDVRRTIELGICKVNV 229 (282)
T ss_pred CHHHHHHHHH---HHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhCCC-eEEecCCCCCHHHHHHHHHcCCeEEEe
Q ss_pred e
Q 022377 91 S 91 (298)
Q Consensus 91 S 91 (298)
.
T Consensus 230 ~ 230 (282)
T TIGR01858 230 A 230 (282)
T ss_pred C
No 494
>COG0358 DnaG DNA primase (bacterial type) [DNA replication, recombination, and repair]
Probab=35.33 E-value=2.4e+02 Score=27.54 Aligned_cols=72 Identities=15% Similarity=0.239 Sum_probs=52.3
Q ss_pred HHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCC
Q 022377 48 IEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNP 126 (298)
Q Consensus 48 ~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~ 126 (298)
..++++..+ .|+. -++.|=|+.+ ++.+..|.+ +...|.+.+||. . .+...+.++++.+...+. .
T Consensus 256 ymDViaL~~--aGi~-naVA~lGTalt~ehi~~L~r-~~~~vil~fDgD-~---------AG~~Aa~ral~~~~~~~~-~ 320 (568)
T COG0358 256 YMDVIALHK--AGIK-NAVASLGTALTEEHIKLLSR-GKKKVILCFDGD-R---------AGRKAAKRALQLVLPLDF-V 320 (568)
T ss_pred hHHHHHHHH--cCCc-ceeecccccCCHHHHHHHHh-cCCCEEEEeCCh-H---------HHHHHHHHHHHHhhhhcc-C
Confidence 445555443 3885 7788999987 678888888 566799999993 2 246677778888888776 4
Q ss_pred EEEEEEEec
Q 022377 127 VKVNCVVMR 135 (298)
Q Consensus 127 v~i~~vi~~ 135 (298)
. +.++..|
T Consensus 321 ~-v~v~~~P 328 (568)
T COG0358 321 G-VFVILLP 328 (568)
T ss_pred C-eEEEECC
Confidence 4 7777777
No 495
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=35.30 E-value=2.8e+02 Score=23.53 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=59.6
Q ss_pred CccCccccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEecCCCCHHhhhhhcCC-------CcHHHH
Q 022377 40 GEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNISLDTLVPAKFEFLTRR-------KGHEKV 112 (298)
Q Consensus 40 GEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~-------~~~~~v 112 (298)
|=|-..-..-+++..-.- +. -+.+-|-|.+-++ ..+..|.|+.-+.....+.+++.. .+|+-+
T Consensus 66 GipS~sIY~~ELi~~y~V-k~--iIRvGt~Gal~~~-------v~l~DvVia~~A~tds~~~~~~f~~~df~~~ad~~Ll 135 (236)
T COG0813 66 GIPSISIYSRELITDYGV-KK--IIRVGTCGALSED-------VKLRDVVIAQGASTDSNVNRIRFKPHDFAPIADFELL 135 (236)
T ss_pred CCccHHHHHHHHHHHhCc-ce--EEEEEccccccCC-------cccceEEEeccccCcchhhhcccCcccccccCCHHHH
Confidence 544443333344443222 12 2567788876533 234557777666555555555432 348889
Q ss_pred HHHHHHHHHcCCCCEEEEEEEecCCCH-hHHHHHHHHHhhCCC
Q 022377 113 MESINAAIEVGYNPVKVNCVVMRGFND-DEICDFVELTRDRPI 154 (298)
Q Consensus 113 ~~~i~~l~~~g~~~v~i~~vi~~~~n~-~~i~~i~~~~~~~g~ 154 (298)
..+.+.+.+.|+ .+.+..+...-.-+ .+ .++.+.+.+.|+
T Consensus 136 ~~a~~~A~e~gi-~~hvgnv~ssD~FY~~~-~~~~~~~~~~gv 176 (236)
T COG0813 136 EKAYETAKELGI-DTHVGNVFSSDLFYNPD-TEMFDLMAKYGV 176 (236)
T ss_pred HHHHHHHHHhCC-ceeeeeeeeeecccCCC-HHHHHHHHHhCC
Confidence 999999999999 88886555532222 22 555666666555
No 496
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=35.28 E-value=2.8e+02 Score=23.53 Aligned_cols=49 Identities=14% Similarity=0.324 Sum_probs=31.0
Q ss_pred CCccCc--cccHHHHHHHHhccCCCCcEEEEeCccchHhhHHHHHHcCCCeEEEe
Q 022377 39 GGEPTV--RKDIEEACFHLSKLKGLKTLAMTTNGLTLARKLPKLKESGLTSVNIS 91 (298)
Q Consensus 39 GGEPll--~~~~~~ii~~~~~~~~~~~v~i~TNG~ll~~~~~~l~~~~~~~v~iS 91 (298)
||=-+. ...+.++++.+++ .|+. |++-.++ ..+.++.-++.|.+.|.+.
T Consensus 102 gGlD~~~~~~~l~~~v~~L~~-~Gir-VSLFiD~--d~~qi~aa~~~gA~~IELh 152 (243)
T COG0854 102 GGLDVAGQLDKLRDAVRRLKN-AGIR-VSLFIDP--DPEQIEAAAEVGAPRIELH 152 (243)
T ss_pred cchhhhhhhhhHHHHHHHHHh-CCCe-EEEEeCC--CHHHHHHHHHhCCCEEEEe
Confidence 555555 3345677787777 4884 8876653 2345666677777776665
No 497
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=35.14 E-value=1.8e+02 Score=26.09 Aligned_cols=25 Identities=36% Similarity=0.357 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcC
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLTG 39 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~tG 39 (298)
++.+++..+.+.+.+.|+..|.+++
T Consensus 213 ~~~~~~~~ia~~l~~aGad~I~~~n 237 (327)
T cd04738 213 LSDEELEDIADVALEHGVDGIIATN 237 (327)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEC
Confidence 4556666677766677777776654
No 498
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.10 E-value=2.8e+02 Score=23.46 Aligned_cols=80 Identities=10% Similarity=0.031 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHHhCCCCEEEEcCCccCccccHHHHHHHHhccCCCCcEEEEeCccch-HhhHHHHHHcCCCeEEEecC
Q 022377 15 LSLNEILRLAYLFVTSGVDKIRLTGGEPTVRKDIEEACFHLSKLKGLKTLAMTTNGLTL-ARKLPKLKESGLTSVNISLD 93 (298)
Q Consensus 15 l~~e~~~~~i~~~~~~~~~~v~~tGGEPll~~~~~~ii~~~~~~~~~~~v~i~TNG~ll-~~~~~~l~~~~~~~v~iSld 93 (298)
-+.++...+++.+.+.|++.+-+|---|-...-+..+.++..+..+ .+ +.--|+.+ .+.++...++|.+ +.||-
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p--~~-~vGaGTVl~~e~a~~a~~aGA~-FiVsP- 98 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELP--GM-ILGVGSIVDAATAALYIQLGAN-FIVTP- 98 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCC--Ce-EEeeEeCcCHHHHHHHHHcCCC-EEECC-
Confidence 5788999999999999998887775444433344444444433212 13 34567777 5789999999998 77884
Q ss_pred CCCHHh
Q 022377 94 TLVPAK 99 (298)
Q Consensus 94 g~~~~~ 99 (298)
+.+++.
T Consensus 99 ~~~~~v 104 (222)
T PRK07114 99 LFNPDI 104 (222)
T ss_pred CCCHHH
Confidence 445553
No 499
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=35.08 E-value=90 Score=27.69 Aligned_cols=68 Identities=18% Similarity=0.101 Sum_probs=36.8
Q ss_pred HHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHcCCCCEEEEEEEecCC------CH-hHHHHHHHHH
Q 022377 77 LPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEVGYNPVKVNCVVMRGF------ND-DEICDFVELT 149 (298)
Q Consensus 77 ~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~g~~~v~i~~vi~~~~------n~-~~i~~i~~~~ 149 (298)
++...+.|+..|.+. +|..+. ..++.+.+.++.+++.+. .+.+... ++.. +. --.++.++.+
T Consensus 45 ~~~~~~~G~~~i~l~-gg~~~~--------~~~~~~~~i~~~Ik~~~~-~i~~~~~-s~~e~~~~~~~~g~~~~e~l~~L 113 (309)
T TIGR00423 45 VKEAVAKGATEVCIQ-GGLNPQ--------LDIEYYEELFRAIKQEFP-DVHIHAF-SPMEVYFLAKNEGLSIEEVLKRL 113 (309)
T ss_pred HHHHHHCCCCEEEEe-cCCCCC--------CCHHHHHHHHHHHHHHCC-CceEEec-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 444456678888876 442221 235777788888877654 4443321 1100 00 0135677777
Q ss_pred hhCCCe
Q 022377 150 RDRPIN 155 (298)
Q Consensus 150 ~~~g~~ 155 (298)
++.|++
T Consensus 114 keAGl~ 119 (309)
T TIGR00423 114 KKAGLD 119 (309)
T ss_pred HHcCCC
Confidence 777764
No 500
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=34.88 E-value=3e+02 Score=23.84 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=55.7
Q ss_pred EEEEeCccchH---hhHHHHHHcCCCeEEEecCCCCHHhhhhhcCCCcHHHHHHHHHHHHHc-CCCCEEEEEEEecCCCH
Q 022377 64 LAMTTNGLTLA---RKLPKLKESGLTSVNISLDTLVPAKFEFLTRRKGHEKVMESINAAIEV-GYNPVKVNCVVMRGFND 139 (298)
Q Consensus 64 v~i~TNG~ll~---~~~~~l~~~~~~~v~iSldg~~~~~~~~ir~~~~~~~v~~~i~~l~~~-g~~~v~i~~vi~~~~n~ 139 (298)
+.++-.|.-.+ +.++.+.+.|.+.|.+.+..++...... -....+.+.+.++.+++. ++ ++.+.+. ++...
T Consensus 101 vi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~--~~~~~~~~~eiv~~vr~~~~~-pv~vKl~--~~~~~ 175 (289)
T cd02810 101 LIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQ--LGQDPEAVANLLKAVKAAVDI-PLLVKLS--PYFDL 175 (289)
T ss_pred EEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcc--cccCHHHHHHHHHHHHHccCC-CEEEEeC--CCCCH
Confidence 55555555443 4567777788999999887765321111 012356666666666664 56 6666654 23456
Q ss_pred hHHHHHHHHHhhCCCee
Q 022377 140 DEICDFVELTRDRPINI 156 (298)
Q Consensus 140 ~~i~~i~~~~~~~g~~~ 156 (298)
+++.++++.+.+.|++.
T Consensus 176 ~~~~~~a~~l~~~Gad~ 192 (289)
T cd02810 176 EDIVELAKAAERAGADG 192 (289)
T ss_pred HHHHHHHHHHHHcCCCE
Confidence 68999999999989863
Done!