BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022378
         (298 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P63730|CARA_STAAW Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus
           (strain MW2) GN=carA PE=3 SV=1
          Length = 366

 Score = 32.7 bits (73), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 187 PIIEMSFGRFPF-ASSHGRKLYAASHGSSLFQLSFGTR--NRPMYGAGRNMQDLLASRKG 243
           P+I+   G+ PF     G +L+A S G+S F++ FG R  N P+        D+ +   G
Sbjct: 233 PMIQGILGKIPFFGICLGHQLFALSQGASSFKMKFGHRGANHPVKNLETGKVDITSQNHG 292

Query: 244 LPLII 248
             + I
Sbjct: 293 YAIDI 297


>sp|Q6GA11|CARA_STAAS Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus
           (strain MSSA476) GN=carA PE=3 SV=1
          Length = 366

 Score = 32.7 bits (73), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 187 PIIEMSFGRFPF-ASSHGRKLYAASHGSSLFQLSFGTR--NRPMYGAGRNMQDLLASRKG 243
           P+I+   G+ PF     G +L+A S G+S F++ FG R  N P+        D+ +   G
Sbjct: 233 PMIQGILGKIPFFGICLGHQLFALSQGASSFKMKFGHRGANHPVKNLETGKVDITSQNHG 292

Query: 244 LPLII 248
             + I
Sbjct: 293 YAIDI 297


>sp|P99147|CARA_STAAN Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus
           (strain N315) GN=carA PE=1 SV=1
          Length = 366

 Score = 32.7 bits (73), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 187 PIIEMSFGRFPF-ASSHGRKLYAASHGSSLFQLSFGTR--NRPMYGAGRNMQDLLASRKG 243
           P+I+   G+ PF     G +L+A S G+S F++ FG R  N P+        D+ +   G
Sbjct: 233 PMIQGILGKIPFFGICLGHQLFALSQGASSFKMKFGHRGANHPVKNLETGKVDITSQNHG 292

Query: 244 LPLII 248
             + I
Sbjct: 293 YAIDI 297


>sp|P63729|CARA_STAAM Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus
           (strain Mu50 / ATCC 700699) GN=carA PE=3 SV=1
          Length = 366

 Score = 32.7 bits (73), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 187 PIIEMSFGRFPF-ASSHGRKLYAASHGSSLFQLSFGTR--NRPMYGAGRNMQDLLASRKG 243
           P+I+   G+ PF     G +L+A S G+S F++ FG R  N P+        D+ +   G
Sbjct: 233 PMIQGILGKIPFFGICLGHQLFALSQGASSFKMKFGHRGANHPVKNLETGKVDITSQNHG 292

Query: 244 LPLII 248
             + I
Sbjct: 293 YAIDI 297


>sp|Q5HGN0|CARA_STAAC Carbamoyl-phosphate synthase small chain OS=Staphylococcus aureus
           (strain COL) GN=carA PE=3 SV=1
          Length = 366

 Score = 32.7 bits (73), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 187 PIIEMSFGRFPF-ASSHGRKLYAASHGSSLFQLSFGTR--NRPMYGAGRNMQDLLASRKG 243
           P+I+   G+ PF     G +L+A S G+S F++ FG R  N P+        D+ +   G
Sbjct: 233 PMIQGILGKIPFFGICLGHQLFALSQGASSFKMKFGHRGANHPVKNLETGKVDITSQNHG 292

Query: 244 LPLII 248
             + I
Sbjct: 293 YAIDI 297


>sp|Q8LPL2|PTR32_ARATH Probable peptide/nitrate transporter At3g16180 OS=Arabidopsis
           thaliana GN=At3g16180 PE=2 SV=2
          Length = 591

 Score = 32.0 bits (71), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 13/67 (19%)

Query: 67  SFLHDELPAGEAPQNRLIIVDPHDDDGDGWYYGSSHKCLLICFRII--------WKLLLS 118
           +F  D+L   E P+N  ++     +   GWYY SS   +LI F +I        WK+   
Sbjct: 165 AFGADQLDNKENPKNERVL-----ESFFGWYYASSSVAVLIAFTVIVYIQDHLGWKIGFG 219

Query: 119 LGIVLLV 125
           +  +L++
Sbjct: 220 IPAILML 226


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,483,750
Number of Sequences: 539616
Number of extensions: 4920888
Number of successful extensions: 9867
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9861
Number of HSP's gapped (non-prelim): 16
length of query: 298
length of database: 191,569,459
effective HSP length: 117
effective length of query: 181
effective length of database: 128,434,387
effective search space: 23246624047
effective search space used: 23246624047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)