Query 022378
Match_columns 298
No_of_seqs 126 out of 398
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:04:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 2.3E-30 5E-35 235.1 24.4 170 115-297 47-216 (219)
2 PF03168 LEA_2: Late embryogen 99.4 9.6E-13 2.1E-17 103.0 7.6 99 170-274 1-100 (101)
3 smart00769 WHy Water Stress an 97.7 0.0003 6.5E-09 56.2 9.7 86 162-252 12-98 (100)
4 PF07092 DUF1356: Protein of u 96.7 0.026 5.6E-07 52.4 11.5 113 97-222 68-181 (238)
5 PF12751 Vac7: Vacuolar segreg 95.5 0.099 2.1E-06 51.6 9.8 31 162-195 347-377 (387)
6 COG5608 LEA14-like dessication 91.8 8.5 0.00018 33.8 14.6 59 165-224 50-109 (161)
7 PLN03160 uncharacterized prote 90.2 15 0.00031 33.7 14.9 85 113-215 48-147 (219)
8 TIGR02588 conserved hypothetic 83.2 2.4 5.1E-05 35.8 4.8 28 119-146 16-45 (122)
9 PF15145 DUF4577: Domain of un 68.3 4.6 0.0001 33.7 2.6 29 102-132 59-88 (128)
10 PF06536 Av_adeno_fibre: Avian 64.7 3.4 7.4E-05 33.1 1.1 12 4-15 21-32 (97)
11 PF04790 Sarcoglycan_1: Sarcog 63.6 98 0.0021 29.3 10.9 37 163-199 84-123 (264)
12 KOG3950 Gamma/delta sarcoglyca 58.2 21 0.00045 33.8 5.2 14 168-181 111-124 (292)
13 PRK10893 lipopolysaccharide ex 56.1 54 0.0012 29.4 7.5 22 129-150 35-56 (192)
14 COG1580 FliL Flagellar basal b 54.1 40 0.00086 29.6 6.1 30 101-131 14-43 (159)
15 PF14927 Neurensin: Neurensin 50.2 16 0.00034 31.6 2.9 36 101-138 40-75 (140)
16 PF09624 DUF2393: Protein of u 45.5 61 0.0013 27.3 5.8 63 122-201 33-97 (149)
17 PF15012 DUF4519: Domain of un 43.1 24 0.00052 25.9 2.5 15 119-133 42-56 (56)
18 COG4736 CcoQ Cbb3-type cytochr 42.4 10 0.00022 28.2 0.4 17 119-135 19-35 (60)
19 PF05545 FixQ: Cbb3-type cytoc 39.3 8.5 0.00019 26.8 -0.3 20 115-134 15-34 (49)
20 PF01102 Glycophorin_A: Glycop 38.9 10 0.00022 31.9 0.0 33 109-141 68-101 (122)
21 PF08113 CoxIIa: Cytochrome c 37.8 14 0.00031 24.3 0.5 11 118-128 14-24 (34)
22 PRK06531 yajC preprotein trans 37.5 10 0.00023 31.5 -0.1 13 125-137 15-27 (113)
23 cd01324 cbb3_Oxidase_CcoQ Cyto 36.7 14 0.0003 26.0 0.4 22 113-134 14-35 (48)
24 PF04478 Mid2: Mid2 like cell 35.8 9.1 0.0002 33.5 -0.8 18 119-136 64-81 (154)
25 KOG4681 Uncharacterized conser 34.1 39 0.00084 32.1 3.0 31 95-131 53-83 (280)
26 PF14283 DUF4366: Domain of un 31.4 54 0.0012 30.2 3.5 19 119-137 172-190 (218)
27 PHA03049 IMV membrane protein; 31.0 13 0.00028 28.2 -0.5 20 113-132 6-25 (68)
28 COG1589 FtsQ Cell division sep 30.2 50 0.0011 30.8 3.2 33 114-146 37-69 (269)
29 PF09753 Use1: Membrane fusion 29.1 43 0.00093 31.0 2.4 15 105-119 228-242 (251)
30 PF12505 DUF3712: Protein of u 28.1 1.3E+02 0.0029 24.5 5.0 25 165-190 100-124 (125)
31 PF10907 DUF2749: Protein of u 27.6 82 0.0018 23.8 3.2 15 119-133 14-28 (66)
32 PF15281 Consortin_C: Consorti 25.2 98 0.0021 25.8 3.6 24 103-128 53-76 (113)
33 PF09680 Tiny_TM_bacill: Prote 25.1 53 0.0011 20.1 1.5 12 110-121 10-21 (24)
34 PF07790 DUF1628: Protein of u 24.3 1.1E+02 0.0023 23.1 3.5 31 109-139 11-42 (80)
35 PF09911 DUF2140: Uncharacteri 23.2 1.1E+02 0.0025 27.2 4.0 18 118-135 14-31 (187)
36 PF06637 PV-1: PV-1 protein (P 23.0 61 0.0013 32.5 2.3 14 115-128 37-50 (442)
37 PF06092 DUF943: Enterobacteri 22.8 44 0.00096 29.4 1.2 15 119-133 15-29 (157)
38 PRK13183 psbN photosystem II r 22.0 1.2E+02 0.0027 21.4 3.0 22 113-134 13-34 (46)
39 COG4698 Uncharacterized protei 21.5 70 0.0015 28.9 2.2 25 120-144 24-48 (197)
40 TIGR00934 2a38euk potassium up 21.3 34 0.00074 37.3 0.2 26 112-137 458-483 (800)
41 PRK05529 cell division protein 21.1 1.5E+02 0.0032 27.6 4.5 14 134-147 58-71 (255)
42 PF05961 Chordopox_A13L: Chord 20.6 28 0.00062 26.4 -0.4 21 113-133 6-26 (68)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=99.98 E-value=2.3e-30 Score=235.14 Aligned_cols=170 Identities=9% Similarity=0.124 Sum_probs=137.3
Q ss_pred HHHHHHHHheeeEEeecCCCceEEEEEeEEEEEeecCCCCCCccccceeEEEeEEEEEEecCCCeEEEEEeCCEEEEEEC
Q 022378 115 LLLSLGIVLLVYYMASKPPPPKISIKMAGVHQFGIGEGVDGTGVATKTLTCNCSIDLIIDNKSKLFGLHIHPPIIEMSFG 194 (298)
Q Consensus 115 lll~~gi~~LV~wLv~RP~~P~fsV~sa~v~~Fnl~~g~d~sGvpt~~Lt~n~tv~l~a~NPNk~~GI~Y~~~~~~v~Y~ 194 (298)
+++++++++.++|+++|||.|+|+|++++|++|++..+. .+...++++++++++++|||+ +||+|++.++.++|+
T Consensus 47 ~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~----~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~~~~~v~Y~ 121 (219)
T PLN03160 47 LLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNT----TLRPGTNITLIADVSVKNPNV-ASFKYSNTTTTIYYG 121 (219)
T ss_pred HHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCC----CCceeEEEEEEEEEEEECCCc-eeEEEcCeEEEEEEC
Confidence 333477788889999999999999999999999996521 123356666778899999999 899999999999999
Q ss_pred ceeeccCCCCCceecCCCeeEEEEEEEeeeeecccccchhhhhhhcCccEeEEEEEEEEEEEEEEeeEEeeeeeEEEEEE
Q 022378 195 RFPFASSHGRKLYAASHGSSLFQLSFGTRNRPMYGAGRNMQDLLASRKGLPLIIRMSFRSNYRVVGDLIKSNFLHRSECF 274 (298)
Q Consensus 195 ~~~la~~~lp~FyQ~~kntt~v~~~l~g~~vpL~gag~~L~~~~~~~g~VpL~l~v~~rvR~kVvG~l~~~k~~~~V~C~ 274 (298)
|+.+|.+.+|+|||++|+|+.+.+.+.....-+.. +..|..+.. +|.+||++++++++|+++ |++++++++.+|+|+
T Consensus 122 g~~vG~a~~p~g~~~ar~T~~l~~tv~~~~~~~~~-~~~L~~D~~-~G~v~l~~~~~v~gkVkv-~~i~k~~v~~~v~C~ 198 (219)
T PLN03160 122 GTVVGEARTPPGKAKARRTMRMNVTVDIIPDKILS-VPGLLTDIS-SGLLNMNSYTRIGGKVKI-LKIIKKHVVVKMNCT 198 (219)
T ss_pred CEEEEEEEcCCcccCCCCeEEEEEEEEEEeceecc-chhHHHHhh-CCeEEEEEEEEEEEEEEE-EEEEEEEEEEEEEeE
Confidence 99999999999999999999888876533221211 345655555 789999999999999995 678899999999999
Q ss_pred EEEecCCCccccccccCCCeeec
Q 022378 275 LFLHRNYDKRHATQVYNSTCAVT 297 (298)
Q Consensus 275 l~v~~~~~~~~~~~~~~~sC~~~ 297 (298)
+.|+.... .+++..|+++
T Consensus 199 v~V~~~~~-----~i~~~~C~~~ 216 (219)
T PLN03160 199 MTVNITSQ-----AIQGQKCKRH 216 (219)
T ss_pred EEEECCCC-----EEeccEeccc
Confidence 99986432 3567789875
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.39 E-value=9.6e-13 Score=103.02 Aligned_cols=99 Identities=15% Similarity=0.265 Sum_probs=74.1
Q ss_pred EEEEecCCCeEEEEEeCCEEEEEECceeec-cCCCCCceecCCCeeEEEEEEEeeeeecccccchhhhhhhcCccEeEEE
Q 022378 170 DLIIDNKSKLFGLHIHPPIIEMSFGRFPFA-SSHGRKLYAASHGSSLFQLSFGTRNRPMYGAGRNMQDLLASRKGLPLII 248 (298)
Q Consensus 170 ~l~a~NPNk~~GI~Y~~~~~~v~Y~~~~la-~~~lp~FyQ~~kntt~v~~~l~g~~vpL~gag~~L~~~~~~~g~VpL~l 248 (298)
+|.++|||. ++|+|++.++.++|+|..+| ....++|+|++++++++.+.+..+...+ ...+.++. .+..++++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~v~~~~~~l---~~~l~~~~--~~~~~~~v 74 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVPVSVDYSDL---PRLLKDLL--AGRVPFDV 74 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEEEEEEHHHH---HHHHHHHH--HTTSCEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEEEEEcHHHH---HHHHHhhh--ccccceEE
Confidence 478899999 99999999999999999999 7789999999999999999887776555 44444444 34677888
Q ss_pred EEEEEEEEEEEeeEEeeeeeEEEEEE
Q 022378 249 RMSFRSNYRVVGDLIKSNFLHRSECF 274 (298)
Q Consensus 249 ~v~~rvR~kVvG~l~~~k~~~~V~C~ 274 (298)
.++++++++|++.....+++..++|.
T Consensus 75 ~~~~~g~~~v~~~~~~~~~~v~~~~~ 100 (101)
T PF03168_consen 75 TYRIRGTFKVLGTPIFGSVRVPVSCE 100 (101)
T ss_dssp EEEEEEEEE-EE-TTTSCEEEEEEEE
T ss_pred EEEEEEEEEEcccceeeeEEEeEEeE
Confidence 88888888865444444555555553
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=97.74 E-value=0.0003 Score=56.15 Aligned_cols=86 Identities=9% Similarity=0.147 Sum_probs=64.1
Q ss_pred eeEEEeEEEEEEecCCCeEEEEEeCCEEEEEECceeeccCCCC-CceecCCCeeEEEEEEEeeeeecccccchhhhhhhc
Q 022378 162 TLTCNCSIDLIIDNKSKLFGLHIHPPIIEMSFGRFPFASSHGR-KLYAASHGSSLFQLSFGTRNRPMYGAGRNMQDLLAS 240 (298)
Q Consensus 162 ~Lt~n~tv~l~a~NPNk~~GI~Y~~~~~~v~Y~~~~la~~~lp-~FyQ~~kntt~v~~~l~g~~vpL~gag~~L~~~~~~ 240 (298)
.+...+.+++.+.|||. +.+.|+..+..++|+|..+|.+..+ ....++++++.+.+.+.-.. ......+. ++.+
T Consensus 12 ~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~~~~~~---~~~~~~~~-~l~~ 86 (100)
T smart00769 12 GLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVPVTVNL---FLAEALIW-HIAN 86 (100)
T ss_pred ceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEEEEeeh---hHhHHHHH-hhcc
Confidence 35567778899999997 6999999999999999999999986 68899999998888876632 11223333 2333
Q ss_pred CccEeEEEEEEE
Q 022378 241 RKGLPLIIRMSF 252 (298)
Q Consensus 241 ~g~VpL~l~v~~ 252 (298)
+..++.++++++
T Consensus 87 ~~~~~y~l~g~l 98 (100)
T smart00769 87 GEEIPYRLDGKL 98 (100)
T ss_pred CCCccEEEEEEE
Confidence 456777766654
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=96.66 E-value=0.026 Score=52.42 Aligned_cols=113 Identities=14% Similarity=0.269 Sum_probs=69.8
Q ss_pred ccccCccchhhHHHHHHHHHHHHHHHheeeEEeecCCCceEEEEEeEEEEEeecCCCCCCccccceeEEEeEEEEEEecC
Q 022378 97 YYGSSHKCLLICFRIIWKLLLSLGIVLLVYYMASKPPPPKISIKMAGVHQFGIGEGVDGTGVATKTLTCNCSIDLIIDNK 176 (298)
Q Consensus 97 ~~~~~~rc~~~~~~v~~~lll~~gi~~LV~wLv~RP~~P~fsV~sa~v~~Fnl~~g~d~sGvpt~~Lt~n~tv~l~a~NP 176 (298)
|..+.|-+++..+.+ ++.|++.|+ +||+|+ ||. +.|..+.+....+.-..+ .+.+.+|++-.+.+.||
T Consensus 68 RLKPrRTklyV~~sV-~~CLl~~~L--~iFFLf--PRs--V~v~~~gv~s~~V~f~~~-----~~~v~l~itn~lNIsN~ 135 (238)
T PF07092_consen 68 RLKPRRTKLYVFLSV-LLCLLLSGL--VIFFLF--PRS--VTVSPVGVKSVTVSFNPD-----KSTVQLNITNTLNISNP 135 (238)
T ss_pred ccCCceeEEEeeHHH-HHHHHHHHh--eEEEEe--CcE--EEEecCcEEEEEEEEeCC-----CCEEEEEEEEEEEccCC
Confidence 666676676654444 233322333 344444 443 444444444444322111 12577888888999999
Q ss_pred CCeEEEEEeCCEEEEEECceeeccCCCCCc-eecCCCeeEEEEEEEe
Q 022378 177 SKLFGLHIHPPIIEMSFGRFPFASSHGRKL-YAASHGSSLFQLSFGT 222 (298)
Q Consensus 177 Nk~~GI~Y~~~~~~v~Y~~~~la~~~lp~F-yQ~~kntt~v~~~l~g 222 (298)
| ++-|......+++.|....+|.+..... .-++++.+.+...+..
T Consensus 136 N-Fy~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~~q~~~tV~t 181 (238)
T PF07092_consen 136 N-FYPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSSKQVNYTVKT 181 (238)
T ss_pred C-EEEEEEEeEEEEEEEEEeEEeeeEecceEEecccCCceEEEEeeE
Confidence 9 5789999999999999999998876544 4466666655555443
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=95.48 E-value=0.099 Score=51.64 Aligned_cols=31 Identities=13% Similarity=0.046 Sum_probs=24.3
Q ss_pred eeEEEeEEEEEEecCCCeEEEEEeCCEEEEEECc
Q 022378 162 TLTCNCSIDLIIDNKSKLFGLHIHPPIIEMSFGR 195 (298)
Q Consensus 162 ~Lt~n~tv~l~a~NPNk~~GI~Y~~~~~~v~Y~~ 195 (298)
-|-+++ ++.+.|||- |.|..+..++.+|=.-
T Consensus 347 ELmfdl--~V~A~NPn~-~~V~I~d~dldIFAKS 377 (387)
T PF12751_consen 347 ELMFDL--TVEAFNPNW-FTVTIDDMDLDIFAKS 377 (387)
T ss_pred eEEEee--EEEEECCCe-EEEEeccceeeeEecC
Confidence 455555 788999995 7999999999987543
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=91.82 E-value=8.5 Score=33.82 Aligned_cols=59 Identities=8% Similarity=0.056 Sum_probs=49.0
Q ss_pred EEeEEEEEEecCCCeEEEEEeCCEEEEEECceeeccCCC-CCceecCCCeeEEEEEEEeee
Q 022378 165 CNCSIDLIIDNKSKLFGLHIHPPIIEMSFGRFPFASSHG-RKLYAASHGSSLFQLSFGTRN 224 (298)
Q Consensus 165 ~n~tv~l~a~NPNk~~GI~Y~~~~~~v~Y~~~~la~~~l-p~FyQ~~kntt~v~~~l~g~~ 224 (298)
..+-.++.++|||. |-|-.......++-+|..+|.|.. ..+..++++..++.+.+.-+.
T Consensus 50 ~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l~~d~ 109 (161)
T COG5608 50 TEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPLRLDN 109 (161)
T ss_pred eEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEEEEeh
Confidence 35566788899997 688888888899999999999975 458889999999998877654
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=90.21 E-value=15 Score=33.67 Aligned_cols=85 Identities=9% Similarity=0.142 Sum_probs=50.4
Q ss_pred HHHHHHHHHHheeeEEeecC--CCceEEEEEeEEEE-------EeecCCCCCCccccceeEEEeE------EEEEEecCC
Q 022378 113 WKLLLSLGIVLLVYYMASKP--PPPKISIKMAGVHQ-------FGIGEGVDGTGVATKTLTCNCS------IDLIIDNKS 177 (298)
Q Consensus 113 ~~lll~~gi~~LV~wLv~RP--~~P~fsV~sa~v~~-------Fnl~~g~d~sGvpt~~Lt~n~t------v~l~a~NPN 177 (298)
++++++++++++.++=.=+| +--.++|+.+.+.. +|+ +|+++++ +.+.++|
T Consensus 48 l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~------------tl~~~v~v~NPN~~~~~Y~~-- 113 (219)
T PLN03160 48 LILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNI------------TLIADVSVKNPNVASFKYSN-- 113 (219)
T ss_pred HHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEE------------EEEEEEEEECCCceeEEEcC--
Confidence 45555566666655555677 45667777776642 222 2222222 2355543
Q ss_pred CeEEEEEeCCEEEEEECceeeccCCCCCceecCCCeeE
Q 022378 178 KLFGLHIHPPIIEMSFGRFPFASSHGRKLYAASHGSSL 215 (298)
Q Consensus 178 k~~GI~Y~~~~~~v~Y~~~~la~~~lp~FyQ~~kntt~ 215 (298)
-...++|+...+ +...+..+..+++.+.+.+.+.
T Consensus 114 ~~~~v~Y~g~~v----G~a~~p~g~~~ar~T~~l~~tv 147 (219)
T PLN03160 114 TTTTIYYGGTVV----GEARTPPGKAKARRTMRMNVTV 147 (219)
T ss_pred eEEEEEECCEEE----EEEEcCCcccCCCCeEEEEEEE
Confidence 346789988544 4566777788888888888774
No 8
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=83.17 E-value=2.4 Score=35.77 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=20.5
Q ss_pred HHHHheeeE--EeecCCCceEEEEEeEEEE
Q 022378 119 LGIVLLVYY--MASKPPPPKISIKMAGVHQ 146 (298)
Q Consensus 119 ~gi~~LV~w--Lv~RP~~P~fsV~sa~v~~ 146 (298)
++++.+|+| +.-++++|.+.+.......
T Consensus 16 l~viglv~y~~l~~~~~pp~l~v~~~~~~r 45 (122)
T TIGR02588 16 AAMFGLVAYDWLRYSNKAAVLEVAPAEVER 45 (122)
T ss_pred HHHHHHHHHHhhccCCCCCeEEEeehheeE
Confidence 566666665 7778899999887766554
No 9
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=68.32 E-value=4.6 Score=33.68 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=20.5
Q ss_pred ccch-hhHHHHHHHHHHHHHHHheeeEEeecC
Q 022378 102 HKCL-LICFRIIWKLLLSLGIVLLVYYMASKP 132 (298)
Q Consensus 102 ~rc~-~~~~~v~~~lll~~gi~~LV~wLv~RP 132 (298)
++|+ ++.++ ++++++++++.||++|+++-
T Consensus 59 ~~~lffvgli--i~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 59 SRSLFFVGLI--IVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred ceeehHHHHH--HHHHHHHHHHHHHHHheeec
Confidence 4664 44444 36777789999999988874
No 10
>PF06536 Av_adeno_fibre: Avian adenovirus fibre; InterPro: IPR010537 This family contains avian adenovirus fibre proteins, which have been linked to variations in virulence []. Avian adenoviruses possess penton capsomers that consist of a pentameric base associated with two fibres [].; PDB: 2VTW_F.
Probab=64.67 E-value=3.4 Score=33.11 Aligned_cols=12 Identities=25% Similarity=1.043 Sum_probs=9.0
Q ss_pred CcccceeEEEeC
Q 022378 4 TYPVVCGYYVKR 15 (298)
Q Consensus 4 ~~~~~~~y~v~~ 15 (298)
.++.+|+||.|.
T Consensus 21 ~~~F~caYyLQQ 32 (97)
T PF06536_consen 21 AFSFSCAYYLQQ 32 (97)
T ss_dssp S-EEEEEEEEEE
T ss_pred CCccchHHHHHH
Confidence 357899999995
No 11
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=63.63 E-value=98 Score=29.31 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=20.7
Q ss_pred eEEEeEEEEEEecCCCeEE--EEEeCCE-EEEEECceeec
Q 022378 163 LTCNCSIDLIIDNKSKLFG--LHIHPPI-IEMSFGRFPFA 199 (298)
Q Consensus 163 Lt~n~tv~l~a~NPNk~~G--I~Y~~~~-~~v~Y~~~~la 199 (298)
++.+-.+.+.++|.|.... +..++.. +....+...+-
T Consensus 84 i~s~~~v~~~~r~~~g~~~~~l~v~~~~~v~~~~~~F~V~ 123 (264)
T PF04790_consen 84 IQSSRNVTLNARNENGSVTSRLVVGPDGTVEAQSNRFEVK 123 (264)
T ss_pred EEecCceEEEEecCCCcccceEEECCCccEEEecCeEEEE
Confidence 3444456777888887543 5555544 44444444443
No 12
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=58.20 E-value=21 Score=33.79 Aligned_cols=14 Identities=7% Similarity=0.045 Sum_probs=11.2
Q ss_pred EEEEEEecCCCeEE
Q 022378 168 SIDLIIDNKSKLFG 181 (298)
Q Consensus 168 tv~l~a~NPNk~~G 181 (298)
.+++.+||||.++.
T Consensus 111 nvtvnarn~~g~v~ 124 (292)
T KOG3950|consen 111 NVTVNARNPNGKVT 124 (292)
T ss_pred CeeEEccCCCCcee
Confidence 47888999998664
No 13
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=56.14 E-value=54 Score=29.36 Aligned_cols=22 Identities=5% Similarity=0.037 Sum_probs=18.3
Q ss_pred eecCCCceEEEEEeEEEEEeec
Q 022378 129 ASKPPPPKISIKMAGVHQFGIG 150 (298)
Q Consensus 129 v~RP~~P~fsV~sa~v~~Fnl~ 150 (298)
...++.|.|.+++++...|+-+
T Consensus 35 ~~~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 35 VVNNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred cCCCCCCCEEEeccEEEEECCC
Confidence 3457889999999999998763
No 14
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=54.11 E-value=40 Score=29.58 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=19.7
Q ss_pred CccchhhHHHHHHHHHHHHHHHheeeEEeec
Q 022378 101 SHKCLLICFRIIWKLLLSLGIVLLVYYMASK 131 (298)
Q Consensus 101 ~~rc~~~~~~v~~~lll~~gi~~LV~wLv~R 131 (298)
..+-+||.+++ +++++++|+++.++|+..+
T Consensus 14 ~k~~~~I~liv-~ivl~~~a~~~~~~~~~~~ 43 (159)
T COG1580 14 KKKSLWILLIV-LIVLLALAGAGYFFWFGSK 43 (159)
T ss_pred CCceeehHHHH-HHHHHHHHHHHHHHhhhcc
Confidence 33445666655 4666667888888888763
No 15
>PF14927 Neurensin: Neurensin
Probab=50.23 E-value=16 Score=31.57 Aligned_cols=36 Identities=36% Similarity=0.393 Sum_probs=16.8
Q ss_pred CccchhhHHHHHHHHHHHHHHHheeeEEeecCCCceEE
Q 022378 101 SHKCLLICFRIIWKLLLSLGIVLLVYYMASKPPPPKIS 138 (298)
Q Consensus 101 ~~rc~~~~~~v~~~lll~~gi~~LV~wLv~RP~~P~fs 138 (298)
..-||-+.|+++ ++++++|++++++=.+ =|++++..
T Consensus 40 ~s~~wkV~~i~g-~l~Ll~Gi~~l~vgY~-vP~~~e~~ 75 (140)
T PF14927_consen 40 SSVCWKVGFISG-LLLLLLGIVALTVGYL-VPPKIEVF 75 (140)
T ss_pred cchhHHHHHHHH-HHHHHHHHHHHHhhcc-cCCcceec
Confidence 334443445544 3444467765544333 34444443
No 16
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=45.54 E-value=61 Score=27.30 Aligned_cols=63 Identities=8% Similarity=0.088 Sum_probs=35.1
Q ss_pred HheeeEEeecC--CCceEEEEEeEEEEEeecCCCCCCccccceeEEEeEEEEEEecCCCeEEEEEeCCEEEEEECceeec
Q 022378 122 VLLVYYMASKP--PPPKISIKMAGVHQFGIGEGVDGTGVATKTLTCNCSIDLIIDNKSKLFGLHIHPPIIEMSFGRFPFA 199 (298)
Q Consensus 122 ~~LV~wLv~RP--~~P~fsV~sa~v~~Fnl~~g~d~sGvpt~~Lt~n~tv~l~a~NPNk~~GI~Y~~~~~~v~Y~~~~la 199 (298)
+.+++|.++.. ++|+.++.+.. .+..++ ...+..+++|-+++ .|..=..++.+..++....
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~--~l~~~~--------------~~~v~g~V~N~g~~-~i~~c~i~~~l~~~~~~~~ 95 (149)
T PF09624_consen 33 IPFFGYYWLDKYLKKIELTLTSQK--RLQYSE--------------SFYVDGTVTNTGKF-TIKKCKITVKLYNDKQVSG 95 (149)
T ss_pred HHHHHHHHHhhhcCCceEEEeeee--eeeecc--------------EEEEEEEEEECCCC-EeeEEEEEEEEEeCCCccC
Confidence 44455555555 66666655543 344332 24456777888864 5665566677766555444
Q ss_pred cC
Q 022378 200 SS 201 (298)
Q Consensus 200 ~~ 201 (298)
+.
T Consensus 96 n~ 97 (149)
T PF09624_consen 96 NK 97 (149)
T ss_pred ch
Confidence 43
No 17
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=43.13 E-value=24 Score=25.88 Aligned_cols=15 Identities=13% Similarity=0.565 Sum_probs=11.2
Q ss_pred HHHHheeeEEeecCC
Q 022378 119 LGIVLLVYYMASKPP 133 (298)
Q Consensus 119 ~gi~~LV~wLv~RP~ 133 (298)
+-++++++|+..||+
T Consensus 42 ~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 42 FLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHhheeEEeccCC
Confidence 334568889999995
No 18
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=42.43 E-value=10 Score=28.19 Aligned_cols=17 Identities=24% Similarity=0.336 Sum_probs=12.3
Q ss_pred HHHHheeeEEeecCCCc
Q 022378 119 LGIVLLVYYMASKPPPP 135 (298)
Q Consensus 119 ~gi~~LV~wLv~RP~~P 135 (298)
+.+++.++|.++||++=
T Consensus 19 ~l~fiavi~~ayr~~~K 35 (60)
T COG4736 19 TLFFIAVIYFAYRPGKK 35 (60)
T ss_pred HHHHHHHHHHHhcccch
Confidence 44566778899999753
No 19
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=39.32 E-value=8.5 Score=26.78 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=12.5
Q ss_pred HHHHHHHHheeeEEeecCCC
Q 022378 115 LLLSLGIVLLVYYMASKPPP 134 (298)
Q Consensus 115 lll~~gi~~LV~wLv~RP~~ 134 (298)
+++++++++.|+|.+++|++
T Consensus 15 ~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHcccc
Confidence 33335556667777778874
No 20
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=38.89 E-value=10 Score=31.93 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHheeeEEeecC-CCceEEEEE
Q 022378 109 FRIIWKLLLSLGIVLLVYYMASKP-PPPKISIKM 141 (298)
Q Consensus 109 ~~v~~~lll~~gi~~LV~wLv~RP-~~P~fsV~s 141 (298)
++++.+++-++|+++||+|++-|= |++...++.
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 333334554567777888877754 555555554
No 21
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=37.84 E-value=14 Score=24.32 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=7.2
Q ss_pred HHHHHheeeEE
Q 022378 118 SLGIVLLVYYM 128 (298)
Q Consensus 118 ~~gi~~LV~wL 128 (298)
++++++||||+
T Consensus 14 iLt~~ILvFWf 24 (34)
T PF08113_consen 14 ILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 35667777774
No 22
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=37.49 E-value=10 Score=31.47 Aligned_cols=13 Identities=0% Similarity=0.235 Sum_probs=8.7
Q ss_pred eeEEeecCCCceE
Q 022378 125 VYYMASKPPPPKI 137 (298)
Q Consensus 125 V~wLv~RP~~P~f 137 (298)
++|+.+||++=+.
T Consensus 15 i~yf~iRPQkKr~ 27 (113)
T PRK06531 15 LIFFMQRQQKKQA 27 (113)
T ss_pred HHHheechHHHHH
Confidence 3566799976543
No 23
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=36.71 E-value=14 Score=26.04 Aligned_cols=22 Identities=32% Similarity=0.330 Sum_probs=14.7
Q ss_pred HHHHHHHHHHheeeEEeecCCC
Q 022378 113 WKLLLSLGIVLLVYYMASKPPP 134 (298)
Q Consensus 113 ~~lll~~gi~~LV~wLv~RP~~ 134 (298)
|.+++++++++.|++.+++|+.
T Consensus 14 ~~l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 14 WGLLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHHHhCCCc
Confidence 4454446667777778888864
No 24
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=35.82 E-value=9.1 Score=33.53 Aligned_cols=18 Identities=28% Similarity=0.528 Sum_probs=14.2
Q ss_pred HHHHheeeEEeecCCCce
Q 022378 119 LGIVLLVYYMASKPPPPK 136 (298)
Q Consensus 119 ~gi~~LV~wLv~RP~~P~ 136 (298)
+++++||||+-.|+++=.
T Consensus 64 l~il~lvf~~c~r~kktd 81 (154)
T PF04478_consen 64 LGILALVFIFCIRRKKTD 81 (154)
T ss_pred HHHHHhheeEEEecccCc
Confidence 467778899999998744
No 25
>KOG4681 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.08 E-value=39 Score=32.12 Aligned_cols=31 Identities=23% Similarity=0.519 Sum_probs=16.8
Q ss_pred CcccccCccchhhHHHHHHHHHHHHHHHheeeEEeec
Q 022378 95 GWYYGSSHKCLLICFRIIWKLLLSLGIVLLVYYMASK 131 (298)
Q Consensus 95 ~~~~~~~~rc~~~~~~v~~~lll~~gi~~LV~wLv~R 131 (298)
||+ ....|++..+.++|.++ |+ +|--|-++|
T Consensus 53 g~~--~~g~c~~~~~g~sf~lm---gl-vlgg~~lyr 83 (280)
T KOG4681|consen 53 GWV--MEGGCFDLLFGLSFGLM---GL-VLGGAYLYR 83 (280)
T ss_pred cCc--cCcchHHHHHhHHHHHH---hh-hcccceeEE
Confidence 886 67778665554444333 44 344444444
No 26
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=31.43 E-value=54 Score=30.19 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=13.1
Q ss_pred HHHHheeeEEeecCCCceE
Q 022378 119 LGIVLLVYYMASKPPPPKI 137 (298)
Q Consensus 119 ~gi~~LV~wLv~RP~~P~f 137 (298)
+|..++.++-++|||....
T Consensus 172 ~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 172 IGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred hhcceEEEEEEeccccccc
Confidence 4445566668999987654
No 27
>PHA03049 IMV membrane protein; Provisional
Probab=30.97 E-value=13 Score=28.17 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=15.5
Q ss_pred HHHHHHHHHHheeeEEeecC
Q 022378 113 WKLLLSLGIVLLVYYMASKP 132 (298)
Q Consensus 113 ~~lll~~gi~~LV~wLv~RP 132 (298)
+++++++++++||+|.+++=
T Consensus 6 ~l~iICVaIi~lIvYgiYnk 25 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNK 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 35666788899999988864
No 28
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=30.22 E-value=50 Score=30.82 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=27.0
Q ss_pred HHHHHHHHHheeeEEeecCCCceEEEEEeEEEE
Q 022378 114 KLLLSLGIVLLVYYMASKPPPPKISIKMAGVHQ 146 (298)
Q Consensus 114 ~lll~~gi~~LV~wLv~RP~~P~fsV~sa~v~~ 146 (298)
.+++++++.++++|...-+..|.|.++.+.|++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 37 LYLVLLLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHHHHHHheehhhhcCCccceEEEEec
Confidence 333446667788999999999999999999995
No 29
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=29.08 E-value=43 Score=30.96 Aligned_cols=15 Identities=7% Similarity=0.104 Sum_probs=8.4
Q ss_pred hhhHHHHHHHHHHHH
Q 022378 105 LLICFRIIWKLLLSL 119 (298)
Q Consensus 105 ~~~~~~v~~~lll~~ 119 (298)
||.|+++++++++++
T Consensus 228 ~~~~~~i~~v~~~Fi 242 (251)
T PF09753_consen 228 CWTWLMIFVVIIVFI 242 (251)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777776644444333
No 30
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=28.08 E-value=1.3e+02 Score=24.54 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=16.2
Q ss_pred EEeEEEEEEecCCCeEEEEEeCCEEE
Q 022378 165 CNCSIDLIIDNKSKLFGLHIHPPIIE 190 (298)
Q Consensus 165 ~n~tv~l~a~NPNk~~GI~Y~~~~~~ 190 (298)
.++..++.+.||+. ++|......+.
T Consensus 100 ~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 100 INLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred EEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 34555677799996 67766555443
No 31
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=27.58 E-value=82 Score=23.84 Aligned_cols=15 Identities=7% Similarity=0.076 Sum_probs=12.5
Q ss_pred HHHHheeeEEeecCC
Q 022378 119 LGIVLLVYYMASKPP 133 (298)
Q Consensus 119 ~gi~~LV~wLv~RP~ 133 (298)
.+.+..+.|++++|+
T Consensus 14 aa~a~~atwviVq~~ 28 (66)
T PF10907_consen 14 AAAAGAATWVIVQPR 28 (66)
T ss_pred HhhhceeEEEEECCC
Confidence 455778899999998
No 32
>PF15281 Consortin_C: Consortin C-terminus
Probab=25.24 E-value=98 Score=25.77 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=10.2
Q ss_pred cchhhHHHHHHHHHHHHHHHheeeEE
Q 022378 103 KCLLICFRIIWKLLLSLGIVLLVYYM 128 (298)
Q Consensus 103 rc~~~~~~v~~~lll~~gi~~LV~wL 128 (298)
+|+.++++-..++++++| .-.+|-
T Consensus 53 Scl~L~LlclvTv~lS~g--GTALYC 76 (113)
T PF15281_consen 53 SCLLLLLLCLVTVVLSVG--GTALYC 76 (113)
T ss_pred ccHHHHHHHHHHHHHhcc--ceEEEE
Confidence 675444432224443343 334453
No 33
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=25.07 E-value=53 Score=20.08 Aligned_cols=12 Identities=25% Similarity=0.611 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 022378 110 RIIWKLLLSLGI 121 (298)
Q Consensus 110 ~v~~~lll~~gi 121 (298)
+++|++|+++|.
T Consensus 10 vVLFILLiIvG~ 21 (24)
T PF09680_consen 10 VVLFILLIIVGA 21 (24)
T ss_pred HHHHHHHHHhcc
Confidence 344566655554
No 34
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=24.26 E-value=1.1e+02 Score=23.10 Aligned_cols=31 Identities=26% Similarity=0.421 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHheeeEE-eecCCCceEEE
Q 022378 109 FRIIWKLLLSLGIVLLVYYM-ASKPPPPKISI 139 (298)
Q Consensus 109 ~~v~~~lll~~gi~~LV~wL-v~RP~~P~fsV 139 (298)
++++.++++...+.++++-+ ...++.|+..+
T Consensus 11 LliaitVilaavv~~~~~~~~~~~~~~P~~~~ 42 (80)
T PF07790_consen 11 LLIAITVILAAVVGAFVFGLDSSPESPPQASI 42 (80)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCCCEEEE
Confidence 33433344333333344434 34457888776
No 35
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=23.24 E-value=1.1e+02 Score=27.22 Aligned_cols=18 Identities=28% Similarity=0.720 Sum_probs=13.9
Q ss_pred HHHHHheeeEEeecCCCc
Q 022378 118 SLGIVLLVYYMASKPPPP 135 (298)
Q Consensus 118 ~~gi~~LV~wLv~RP~~P 135 (298)
.+++++.++..+++|..|
T Consensus 14 ~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 14 NLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHhheeeEEEccCCC
Confidence 356677788899999876
No 36
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=23.01 E-value=61 Score=32.53 Aligned_cols=14 Identities=43% Similarity=0.823 Sum_probs=8.4
Q ss_pred HHHHHHHHheeeEE
Q 022378 115 LLLSLGIVLLVYYM 128 (298)
Q Consensus 115 lll~~gi~~LV~wL 128 (298)
.|+++|+++|.+|.
T Consensus 37 ~LIIlgLVLFmVYG 50 (442)
T PF06637_consen 37 FLIILGLVLFMVYG 50 (442)
T ss_pred HHHHHHHHHHHhhC
Confidence 34556766666664
No 37
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=22.82 E-value=44 Score=29.36 Aligned_cols=15 Identities=20% Similarity=0.545 Sum_probs=11.0
Q ss_pred HHHHheeeEEeecCC
Q 022378 119 LGIVLLVYYMASKPP 133 (298)
Q Consensus 119 ~gi~~LV~wLv~RP~ 133 (298)
+|+++.++|+.+||-
T Consensus 15 ~~~~~y~~W~~~rpV 29 (157)
T PF06092_consen 15 LACILYFLWLTLRPV 29 (157)
T ss_pred HHHHHHhhhhccCCe
Confidence 444448899999994
No 38
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=21.97 E-value=1.2e+02 Score=21.35 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=16.9
Q ss_pred HHHHHHHHHHheeeEEeecCCC
Q 022378 113 WKLLLSLGIVLLVYYMASKPPP 134 (298)
Q Consensus 113 ~~lll~~gi~~LV~wLv~RP~~ 134 (298)
++..+++|+...-+|.++-|..
T Consensus 13 ~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 13 TILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred HHHHHHHHHhhheeeeccCCcc
Confidence 4455558999999999998853
No 39
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.53 E-value=70 Score=28.95 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=18.4
Q ss_pred HHHheeeEEeecCCCceEEEEEeEE
Q 022378 120 GIVLLVYYMASKPPPPKISIKMAGV 144 (298)
Q Consensus 120 gi~~LV~wLv~RP~~P~fsV~sa~v 144 (298)
+++++|+-.++.|+.|...+.++.=
T Consensus 24 l~~~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 24 LLAVLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHHhheeeccCCCCCchhhccCc
Confidence 3346777788999998888777654
No 40
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=21.26 E-value=34 Score=37.28 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHheeeEEeecCCCceE
Q 022378 112 IWKLLLSLGIVLLVYYMASKPPPPKI 137 (298)
Q Consensus 112 ~~~lll~~gi~~LV~wLv~RP~~P~f 137 (298)
-|+++.++|+++++.|+...|+.+.+
T Consensus 458 Y~~~~~llG~i~l~~wi~~~~~~~~~ 483 (800)
T TIGR00934 458 YFLGFNILGFVLLLPWINHVKTYSEV 483 (800)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHH
Confidence 35666678999999999877776654
No 41
>PRK05529 cell division protein FtsQ; Provisional
Probab=21.11 E-value=1.5e+02 Score=27.60 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=12.0
Q ss_pred CceEEEEEeEEEEE
Q 022378 134 PPKISIKMAGVHQF 147 (298)
Q Consensus 134 ~P~fsV~sa~v~~F 147 (298)
.|.|.|+.+.|+.-
T Consensus 58 Sp~~~v~~I~V~Gn 71 (255)
T PRK05529 58 SPLLALRSIEVAGN 71 (255)
T ss_pred CCceEEEEEEEECC
Confidence 59999999999853
No 42
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=20.64 E-value=28 Score=26.42 Aligned_cols=21 Identities=14% Similarity=0.281 Sum_probs=15.7
Q ss_pred HHHHHHHHHHheeeEEeecCC
Q 022378 113 WKLLLSLGIVLLVYYMASKPP 133 (298)
Q Consensus 113 ~~lll~~gi~~LV~wLv~RP~ 133 (298)
+++++++++++||+|.+++-+
T Consensus 6 iLi~ICVaii~lIlY~iYnr~ 26 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRK 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 356667888899999888644
Done!