Query 022378
Match_columns 298
No_of_seqs 126 out of 398
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 04:30:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 97.7 8.2E-05 2.8E-09 64.7 7.2 105 133-255 43-148 (174)
2 1xo8_A AT1G01470; structural g 97.3 7.9E-05 2.7E-09 63.1 1.7 105 133-255 20-125 (151)
3 3but_A Uncharacterized protein 96.6 0.012 4.1E-07 48.9 9.7 87 164-254 17-104 (136)
4 2vtw_A Fiber protein 2; viral 44.7 7.2 0.00025 33.7 1.2 12 4-15 26-37 (205)
5 3hd7_B Syntaxin-1A; membrane p 28.2 28 0.00094 27.2 2.1 22 101-122 82-103 (109)
6 3s8f_C Cytochrome C oxidase po 27.7 12 0.00043 23.7 -0.0 15 114-128 10-24 (34)
7 2k21_A Potassium voltage-gated 23.4 1.1E+02 0.0037 25.1 4.8 18 105-122 54-71 (138)
8 1oed_C Acetylcholine receptor 17.4 55 0.0019 29.4 2.0 16 94-109 220-237 (260)
9 2yev_C CAA3-type cytochrome ox 21.7 29 0.00099 24.9 0.0 27 119-145 11-37 (66)
10 1oed_E Acetylcholine receptor 16.5 60 0.002 29.2 2.0 37 86-123 212-250 (260)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=97.67 E-value=8.2e-05 Score=64.66 Aligned_cols=105 Identities=8% Similarity=0.060 Sum_probs=78.2
Q ss_pred CCceEEEEEeEEEEEeecCCCCCCccccceeEEEeEEEEEEecCCCeEEEEEeCCEEEEEECceeeccCCCCC-ceecCC
Q 022378 133 PPPKISIKMAGVHQFGIGEGVDGTGVATKTLTCNCSIDLIIDNKSKLFGLHIHPPIIEMSFGRFPFASSHGRK-LYAASH 211 (298)
Q Consensus 133 ~~P~fsV~sa~v~~Fnl~~g~d~sGvpt~~Lt~n~tv~l~a~NPNk~~GI~Y~~~~~~v~Y~~~~la~~~lp~-FyQ~~k 211 (298)
++|++++.++.+..+++.. ..+.+.+.++|||. +.|-+..++..+.-+|..||+|..+. +-.+++
T Consensus 43 ~~PeV~v~~v~~~~~~l~~-------------~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~ 108 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRDG-------------VDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGTIPDPGSLVGS 108 (174)
T ss_dssp CCCEEEEEEEEEEEECSSS-------------EEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEEESCCCBCCSS
T ss_pred CCCEEEEEEeEEeccccce-------------EEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEecCCCceECCC
Confidence 7899999999999877642 34556788899998 58999999999999999999998876 667899
Q ss_pred CeeEEEEEEEeeeeecccccchhhhhhhcCccEeEEEEEEEEEE
Q 022378 212 GSSLFQLSFGTRNRPMYGAGRNMQDLLASRKGLPLIIRMSFRSN 255 (298)
Q Consensus 212 ntt~v~~~l~g~~vpL~gag~~L~~~~~~~g~VpL~l~v~~rvR 255 (298)
+++++.+.+...-..+ ...+. ++.....++-++++.+.+.
T Consensus 109 g~~~v~Vpv~v~~~~l---~~~~~-~l~~~~~i~Y~L~g~L~id 148 (174)
T 1yyc_A 109 GTTVLDVPVKVAYSIA---VSLMK-DMCTDWDIDYQLDIGLTFD 148 (174)
T ss_dssp EEEEEEEEEEESHHHH---HHTCC-CCCSSEEECEEEEEEEEEE
T ss_pred CcEEEEEEEEEEHHHH---HHHHH-hcCCCCccceEEEEEEEec
Confidence 9999988876642111 11222 2233457888887766544
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=97.25 E-value=7.9e-05 Score=63.09 Aligned_cols=105 Identities=5% Similarity=0.005 Sum_probs=75.9
Q ss_pred CCceEEEEEeEEEEEeecCCCCCCccccceeEEEeEEEEEEecCCCeEEEEEeCCEEEEEECceeeccCCCCC-ceecCC
Q 022378 133 PPPKISIKMAGVHQFGIGEGVDGTGVATKTLTCNCSIDLIIDNKSKLFGLHIHPPIIEMSFGRFPFASSHGRK-LYAASH 211 (298)
Q Consensus 133 ~~P~fsV~sa~v~~Fnl~~g~d~sGvpt~~Lt~n~tv~l~a~NPNk~~GI~Y~~~~~~v~Y~~~~la~~~lp~-FyQ~~k 211 (298)
++|++++.++.+..+++. ...+.+.+.++|||. +.|.+...+..+.=+|..+|+|..+. .-.+++
T Consensus 20 ~~P~v~v~~v~~~~~~~~-------------~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~ 85 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRD-------------SVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAK 85 (151)
T ss_dssp CSCCCBCSEEEECCCTTT-------------EECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSS
T ss_pred CCCEEEEEEeEEeccCcc-------------eeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEecCCCcEECCC
Confidence 789999999988866543 234666888999998 58888888888888999999998875 667899
Q ss_pred CeeEEEEEEEeeeeecccccchhhhhhhcCccEeEEEEEEEEEE
Q 022378 212 GSSLFQLSFGTRNRPMYGAGRNMQDLLASRKGLPLIIRMSFRSN 255 (298)
Q Consensus 212 ntt~v~~~l~g~~vpL~gag~~L~~~~~~~g~VpL~l~v~~rvR 255 (298)
+++++.+.+...-..+ -..+. ++.....++-++++++.+.
T Consensus 86 g~~~v~vpv~v~~~~l---~~~~~-~l~~~~~i~Y~l~g~l~i~ 125 (151)
T 1xo8_A 86 DMTALDIPVVVPYSIL---FNLAR-DVGVDWDIDYELQIGLTID 125 (151)
T ss_dssp SEEEEEECCCEEHHHH---HHHHH-HHHHHSEEEEEEEEEEEEC
T ss_pred CcEEEEEEEEEEHHHH---HHHHH-hcccCCcccEEEEEEEEEc
Confidence 9998888865542111 11222 2333467888887777544
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=96.63 E-value=0.012 Score=48.94 Aligned_cols=87 Identities=6% Similarity=0.003 Sum_probs=62.2
Q ss_pred EEEeEEEEEEecCCCeEEEEEeCCEEEEEECceeeccCC-CCCceecCCCeeEEEEEEEeeeeecccccchhhhhhhcCc
Q 022378 164 TCNCSIDLIIDNKSKLFGLHIHPPIIEMSFGRFPFASSH-GRKLYAASHGSSLFQLSFGTRNRPMYGAGRNMQDLLASRK 242 (298)
Q Consensus 164 t~n~tv~l~a~NPNk~~GI~Y~~~~~~v~Y~~~~la~~~-lp~FyQ~~kntt~v~~~l~g~~vpL~gag~~L~~~~~~~g 242 (298)
...+.+.+.+.|||. +.+.++..+..+..+|+.+|+|. ...+--++.+++++.+.+..+.-.+. ..+.+.++++.
T Consensus 17 ~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~---~~~~~hi~nge 92 (136)
T 3but_A 17 QTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLR---EWWVTHIANGE 92 (136)
T ss_dssp EEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHT---THHHHHHHTTS
T ss_pred EEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhH---HHHHHHhhcCC
Confidence 356777899999997 59999999999999999999986 55688899999999998877653332 22333344332
Q ss_pred cEeEEEEEEEEE
Q 022378 243 GLPLIIRMSFRS 254 (298)
Q Consensus 243 ~VpL~l~v~~rv 254 (298)
.-.|++++++.+
T Consensus 93 ~s~l~i~~~~~l 104 (136)
T 3but_A 93 KTKIRVAIKPTI 104 (136)
T ss_dssp EEEEEEEEEEEE
T ss_pred ceEEEEEEEEEE
Confidence 444555555443
No 4
>2vtw_A Fiber protein 2; viral protein, CELO, short fibre head; 2.00A {Fowl adenovirus 1}
Probab=44.74 E-value=7.2 Score=33.71 Aligned_cols=12 Identities=17% Similarity=0.576 Sum_probs=10.0
Q ss_pred CcccceeEEEeC
Q 022378 4 TYPVVCGYYVKR 15 (298)
Q Consensus 4 ~~~~~~~y~v~~ 15 (298)
.++.||+||.|.
T Consensus 26 ~f~F~cAYyLQQ 37 (205)
T 2vtw_A 26 NNPFNGSYFLQQ 37 (205)
T ss_dssp SCEEEEEEEEEE
T ss_pred cCCcchHHHHHH
Confidence 357899999996
No 5
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=28.18 E-value=28 Score=27.19 Aligned_cols=22 Identities=5% Similarity=-0.035 Sum_probs=8.2
Q ss_pred CccchhhHHHHHHHHHHHHHHH
Q 022378 101 SHKCLLICFRIIWKLLLSLGIV 122 (298)
Q Consensus 101 ~~rc~~~~~~v~~~lll~~gi~ 122 (298)
.++|.|++++++++++++++++
T Consensus 82 ~rkk~~i~l~~~~i~~~i~~~~ 103 (109)
T 3hd7_B 82 ARRKKIMIIICCVILGIIIAST 103 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcceehHHHHHHHHHHHHHH
Confidence 3344343333323333334443
No 6
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=27.75 E-value=12 Score=23.73 Aligned_cols=15 Identities=27% Similarity=0.780 Sum_probs=8.7
Q ss_pred HHHHHHHHHheeeEE
Q 022378 114 KLLLSLGIVLLVYYM 128 (298)
Q Consensus 114 ~lll~~gi~~LV~wL 128 (298)
.+++++|++++++|+
T Consensus 10 ~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 10 AVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 344446666677663
No 7
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=23.41 E-value=1.1e+02 Score=25.09 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=9.8
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 022378 105 LLICFRIIWKLLLSLGIV 122 (298)
Q Consensus 105 ~~~~~~v~~~lll~~gi~ 122 (298)
+.|+++++|.-.+++||.
T Consensus 54 lYIL~vmgffgff~~GIm 71 (138)
T 2k21_A 54 LYVLMVLGFFGFFTLGIM 71 (138)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHHH
Confidence 455555555555555554
No 8
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=17.45 E-value=55 Score=29.43 Aligned_cols=16 Identities=6% Similarity=0.248 Sum_probs=4.8
Q ss_pred CCccccc--CccchhhHH
Q 022378 94 DGWYYGS--SHKCLLICF 109 (298)
Q Consensus 94 ~~~~~~~--~~rc~~~~~ 109 (298)
+.|+++. ..|.|+..|
T Consensus 220 ~dWk~vAmVlDRlfL~iF 237 (260)
T 1oed_C 220 GNWNLVGQTIDRLSMFII 237 (260)
T ss_dssp ------CCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 4899885 555543333
No 9
>2yev_C CAA3-type cytochrome oxidase subunit IV; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=21.72 E-value=29 Score=24.94 Aligned_cols=27 Identities=15% Similarity=0.255 Sum_probs=18.2
Q ss_pred HHHHheeeEEeecCCCceEEEEEeEEE
Q 022378 119 LGIVLLVYYMASKPPPPKISIKMAGVH 145 (298)
Q Consensus 119 ~gi~~LV~wLv~RP~~P~fsV~sa~v~ 145 (298)
..++..++|++++|+.-...=+++.+.
T Consensus 11 a~lVt~~~Yl~lnPR~late~e~~DLr 37 (66)
T 2yev_C 11 AALVTLFFYLILNPRVLTTEGETFDLR 37 (66)
Confidence 445678899999999765554444433
No 10
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=16.51 E-value=60 Score=29.18 Aligned_cols=37 Identities=14% Similarity=0.184 Sum_probs=0.0
Q ss_pred cCCCCCCCCCccccc--CccchhhHHHHHHHHHHHHHHHh
Q 022378 86 VDPHDDDGDGWYYGS--SHKCLLICFRIIWKLLLSLGIVL 123 (298)
Q Consensus 86 ~~~~~~~~~~~~~~~--~~rc~~~~~~v~~~lll~~gi~~ 123 (298)
+|+.++..+.|+++. ..|.|+..|++ +.++-.+|+++
T Consensus 212 ~d~~~~~~~dWk~vAmVlDRlfL~iF~i-~~i~gT~~I~l 250 (260)
T 1oed_E 212 QNDSGSENENWVLIGKVIDKACFWIALL-LFSIGTLAIFL 250 (260)
T ss_dssp --------------CCHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Done!