BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022379
         (298 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1O54|A Chain A, Crystal Structure Of Sam-Dependent O-Methyltransferase
           (Tm0748) From Thermotoga Maritima At 1.65 A Resolution
          Length = 277

 Score = 33.9 bits (76), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 238 KPIWSHLESVPLVQVEEKAPGNLVQREAGSKNYLL 272
           K + +HL  + L +V EK PG +++  AG K Y+L
Sbjct: 44  KKLHTHLGIIDLNEVFEKGPGEIIRTSAGKKGYIL 78


>pdb|1T2K|D Chain D, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
           Jun Bound To Dna
          Length = 61

 Score = 31.6 bits (70), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 27/36 (75%), Gaps = 1/36 (2%)

Query: 139 KRRRQL-RNRDAAVRSRERKKMYVKDLEMKSRYLES 173
           KRR+ L RNR AA RSR+++K++V+ LE K+  L S
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSS 36


>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
           Basis For Creb Faimly Selective Dimerization And Dna
           Binding
 pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
           Basis For Creb Faimly Selective Dimerization And Dna
           Binding
          Length = 55

 Score = 29.6 bits (65), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 25/37 (67%)

Query: 142 RQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKL 178
           R ++NR+AA  SR +KK YVK LE +   LE++ + L
Sbjct: 5   RLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTL 41


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.129    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,717,610
Number of Sequences: 62578
Number of extensions: 280594
Number of successful extensions: 539
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 524
Number of HSP's gapped (non-prelim): 16
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)