Query 022379
Match_columns 298
No_of_seqs 157 out of 758
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 03:04:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022379.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022379hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0709 CREB/ATF family transc 99.6 1.5E-15 3.3E-20 150.3 6.3 105 131-242 244-350 (472)
2 smart00338 BRLZ basic region l 99.5 3.2E-13 7E-18 100.4 9.7 63 135-197 2-64 (65)
3 KOG4343 bZIP transcription fac 99.4 5E-13 1.1E-17 134.7 10.9 102 125-235 268-380 (655)
4 PF00170 bZIP_1: bZIP transcri 99.4 4.3E-12 9.4E-17 94.3 9.3 62 135-196 2-63 (64)
5 KOG3584 cAMP response element 99.3 4.9E-12 1.1E-16 120.3 7.5 59 128-186 281-339 (348)
6 PF07716 bZIP_2: Basic region 99.1 7E-10 1.5E-14 80.5 8.7 52 136-188 3-54 (54)
7 KOG4005 Transcription factor X 99.0 1.7E-09 3.8E-14 101.0 9.5 68 130-197 61-135 (292)
8 KOG0837 Transcriptional activa 98.3 3.4E-06 7.4E-11 79.7 8.9 76 130-205 197-273 (279)
9 PF03131 bZIP_Maf: bZIP Maf tr 98.0 7.2E-08 1.6E-12 76.8 -7.2 55 135-189 27-81 (92)
10 KOG4571 Activating transcripti 97.8 0.00011 2.4E-09 70.4 9.7 64 135-198 224-287 (294)
11 KOG3119 Basic region leucine z 97.6 0.00034 7.4E-09 65.7 10.0 67 135-201 191-257 (269)
12 PRK10884 SH3 domain-containing 97.0 0.01 2.2E-07 54.3 11.7 75 157-242 123-197 (206)
13 KOG4196 bZIP transcription fac 96.9 0.0058 1.3E-07 53.1 8.8 67 136-202 51-117 (135)
14 KOG3863 bZIP transcription fac 96.1 0.0086 1.9E-07 62.5 5.3 58 141-198 493-550 (604)
15 KOG1414 Transcriptional activa 94.9 0.0013 2.7E-08 64.8 -5.2 75 128-202 144-222 (395)
16 KOG1414 Transcriptional activa 93.3 0.015 3.2E-07 57.3 -1.4 62 133-194 280-342 (395)
17 PF06156 DUF972: Protein of un 90.9 0.74 1.6E-05 38.4 6.1 40 160-199 9-55 (107)
18 PF08172 CASP_C: CASP C termin 88.5 1.6 3.5E-05 41.1 7.1 47 154-200 88-134 (248)
19 PRK13169 DNA replication intia 88.1 1.6 3.5E-05 36.8 6.2 40 160-199 9-55 (110)
20 PF06005 DUF904: Protein of un 86.2 2.7 5.9E-05 32.9 6.0 36 161-196 20-55 (72)
21 PRK13922 rod shape-determining 85.8 2.2 4.8E-05 39.5 6.3 44 156-199 66-112 (276)
22 PF02183 HALZ: Homeobox associ 85.7 2.4 5.1E-05 30.5 5.1 38 163-200 2-39 (45)
23 PF12808 Mto2_bdg: Micro-tubul 84.6 3 6.4E-05 31.2 5.3 45 156-200 1-49 (52)
24 TIGR02449 conserved hypothetic 84.1 4.6 0.0001 31.4 6.3 39 160-198 8-46 (65)
25 PF10473 CENP-F_leu_zip: Leuci 82.2 17 0.00037 31.9 9.9 63 138-200 31-93 (140)
26 PF06156 DUF972: Protein of un 81.6 5.8 0.00012 33.2 6.5 30 158-187 28-57 (107)
27 TIGR00219 mreC rod shape-deter 81.2 4.1 9E-05 38.7 6.3 38 162-199 69-110 (283)
28 PF01166 TSC22: TSC-22/dip/bun 80.5 2.9 6.2E-05 32.1 4.0 32 167-198 15-46 (59)
29 COG4467 Regulator of replicati 79.3 5.1 0.00011 34.3 5.5 39 160-198 9-47 (114)
30 PRK10884 SH3 domain-containing 79.1 39 0.00085 31.1 11.7 37 161-197 134-170 (206)
31 PRK13169 DNA replication intia 79.0 7.9 0.00017 32.7 6.5 29 157-185 27-55 (110)
32 KOG4343 bZIP transcription fac 79.0 1.9 4.1E-05 45.4 3.4 44 155-198 305-348 (655)
33 PRK00295 hypothetical protein; 78.3 9.9 0.00021 29.2 6.4 37 160-196 6-42 (68)
34 TIGR02894 DNA_bind_RsfA transc 77.0 12 0.00026 33.8 7.4 36 163-198 101-136 (161)
35 PRK02793 phi X174 lysis protei 76.8 11 0.00025 29.2 6.4 40 159-198 8-54 (72)
36 PRK04325 hypothetical protein; 76.7 11 0.00024 29.4 6.4 38 159-196 9-46 (74)
37 COG3074 Uncharacterized protei 76.6 7.5 0.00016 31.2 5.4 36 161-196 27-62 (79)
38 PF04102 SlyX: SlyX; InterPro 76.4 14 0.0003 28.2 6.8 42 159-200 4-52 (69)
39 PRK04406 hypothetical protein; 76.3 12 0.00025 29.5 6.4 40 159-198 11-57 (75)
40 PRK02119 hypothetical protein; 76.2 12 0.00026 29.2 6.4 43 158-200 8-57 (73)
41 PF06005 DUF904: Protein of un 75.8 12 0.00027 29.2 6.4 40 160-199 5-51 (72)
42 PF15058 Speriolin_N: Sperioli 75.5 7 0.00015 36.3 5.7 37 162-199 8-44 (200)
43 PRK00736 hypothetical protein; 75.2 13 0.00029 28.5 6.4 41 159-199 5-52 (68)
44 PF09744 Jnk-SapK_ap_N: JNK_SA 74.7 31 0.00068 30.7 9.4 45 153-200 72-116 (158)
45 PF08826 DMPK_coil: DMPK coile 72.8 40 0.00087 25.8 8.5 51 144-194 10-60 (61)
46 PF09726 Macoilin: Transmembra 72.2 26 0.00056 37.8 9.8 36 160-195 546-581 (697)
47 PF08232 Striatin: Striatin fa 71.9 48 0.001 28.5 9.6 60 141-200 14-73 (134)
48 PF04977 DivIC: Septum formati 71.9 12 0.00026 27.7 5.4 28 171-198 22-49 (80)
49 PF13851 GAS: Growth-arrest sp 70.7 52 0.0011 29.9 10.1 61 137-197 71-131 (201)
50 TIGR02449 conserved hypothetic 70.6 11 0.00024 29.2 5.0 30 170-199 4-33 (65)
51 PF06216 RTBV_P46: Rice tungro 70.2 12 0.00026 36.7 6.1 40 159-198 64-103 (389)
52 PRK15422 septal ring assembly 68.1 21 0.00045 28.9 6.2 12 185-196 51-62 (79)
53 PF10226 DUF2216: Uncharacteri 67.7 45 0.00097 31.1 9.0 57 137-196 22-78 (195)
54 PRK00888 ftsB cell division pr 67.5 13 0.00028 30.7 5.1 31 157-187 32-62 (105)
55 PF07106 TBPIP: Tat binding pr 67.2 58 0.0013 28.2 9.3 48 160-207 94-143 (169)
56 PF05377 FlaC_arch: Flagella a 65.2 26 0.00057 26.5 5.9 36 161-196 2-37 (55)
57 PF05377 FlaC_arch: Flagella a 65.1 14 0.00031 28.0 4.4 33 167-199 1-33 (55)
58 PRK00846 hypothetical protein; 64.8 30 0.00066 27.6 6.5 42 158-199 12-60 (77)
59 TIGR02209 ftsL_broad cell divi 64.5 31 0.00067 26.3 6.4 30 169-198 27-56 (85)
60 KOG4196 bZIP transcription fac 64.4 16 0.00034 32.3 5.2 31 170-200 78-108 (135)
61 PF00170 bZIP_1: bZIP transcri 63.8 56 0.0012 24.0 7.9 32 158-189 32-63 (64)
62 PF03980 Nnf1: Nnf1 ; InterPr 63.5 13 0.00027 30.1 4.3 31 157-187 78-108 (109)
63 COG1792 MreC Cell shape-determ 63.2 20 0.00044 34.2 6.3 42 157-198 64-108 (284)
64 PF10224 DUF2205: Predicted co 62.8 55 0.0012 26.3 7.7 40 160-199 24-63 (80)
65 PF12711 Kinesin-relat_1: Kine 61.3 22 0.00048 29.0 5.2 39 164-202 22-66 (86)
66 KOG3119 Basic region leucine z 61.2 46 0.001 31.6 8.2 23 176-198 218-240 (269)
67 PF10205 KLRAQ: Predicted coil 60.8 86 0.0019 26.5 8.7 58 137-194 17-75 (102)
68 PF08614 ATG16: Autophagy prot 60.6 1.2E+02 0.0027 26.9 10.4 28 171-198 156-183 (194)
69 COG2433 Uncharacterized conser 60.3 24 0.00051 37.9 6.6 14 184-197 478-491 (652)
70 PF05812 Herpes_BLRF2: Herpesv 60.1 14 0.00031 31.8 4.1 26 176-201 6-31 (118)
71 KOG1962 B-cell receptor-associ 59.6 26 0.00057 32.9 6.1 45 155-199 168-212 (216)
72 KOG4005 Transcription factor X 59.1 72 0.0016 31.0 9.0 25 174-198 126-150 (292)
73 PF01486 K-box: K-box region; 58.7 27 0.00058 27.9 5.3 28 170-197 72-99 (100)
74 PF11932 DUF3450: Protein of u 58.6 1.1E+02 0.0024 28.2 10.0 49 151-199 48-96 (251)
75 PF11365 DUF3166: Protein of u 57.9 38 0.00082 28.2 6.1 39 161-199 3-41 (96)
76 PRK15422 septal ring assembly 57.5 42 0.00091 27.2 6.1 39 160-198 5-43 (79)
77 PF04977 DivIC: Septum formati 57.5 29 0.00063 25.6 5.1 33 155-187 20-52 (80)
78 PF14915 CCDC144C: CCDC144C pr 57.5 52 0.0011 32.5 7.9 53 148-200 182-241 (305)
79 PF10186 Atg14: UV radiation r 56.9 1.3E+02 0.0028 27.3 10.0 41 156-196 67-107 (302)
80 PF01166 TSC22: TSC-22/dip/bun 56.7 20 0.00043 27.6 4.0 23 158-180 20-42 (59)
81 PF07926 TPR_MLP1_2: TPR/MLP1/ 56.1 1.2E+02 0.0027 25.4 9.6 37 162-198 94-130 (132)
82 TIGR03752 conj_TIGR03752 integ 56.0 27 0.00058 36.3 6.0 28 172-199 108-135 (472)
83 KOG3335 Predicted coiled-coil 55.9 30 0.00064 31.9 5.7 43 138-186 91-133 (181)
84 KOG2483 Upstream transcription 55.5 29 0.00062 32.8 5.7 41 155-202 101-141 (232)
85 COG3074 Uncharacterized protei 54.7 50 0.0011 26.6 6.1 39 160-198 5-43 (79)
86 PRK13729 conjugal transfer pil 54.5 62 0.0014 33.7 8.3 28 171-198 95-122 (475)
87 PRK00888 ftsB cell division pr 54.4 39 0.00084 27.9 5.7 33 168-200 29-61 (105)
88 PF03670 UPF0184: Uncharacteri 54.3 51 0.0011 26.9 6.2 42 159-200 33-74 (83)
89 PRK14127 cell division protein 53.9 52 0.0011 27.8 6.4 41 159-199 30-70 (109)
90 PF13815 Dzip-like_N: Iguana/D 53.2 68 0.0015 26.6 7.0 40 157-196 78-117 (118)
91 PF07558 Shugoshin_N: Shugoshi 53.0 14 0.00031 26.5 2.6 33 164-196 12-44 (46)
92 PF07926 TPR_MLP1_2: TPR/MLP1/ 52.4 88 0.0019 26.3 7.7 44 142-185 88-131 (132)
93 PF04420 CHD5: CHD5-like prote 52.1 86 0.0019 27.5 7.8 26 175-200 68-93 (161)
94 COG1382 GimC Prefoldin, chaper 51.5 69 0.0015 27.6 6.9 44 155-198 66-109 (119)
95 PF05812 Herpes_BLRF2: Herpesv 51.5 27 0.00059 30.1 4.5 30 157-186 1-30 (118)
96 PF15556 Zwint: ZW10 interacto 51.1 1.7E+02 0.0037 28.0 9.9 52 145-196 113-164 (252)
97 PHA03155 hypothetical protein; 50.3 48 0.001 28.6 5.7 24 177-200 12-35 (115)
98 PF10186 Atg14: UV radiation r 49.7 1.3E+02 0.0028 27.2 8.9 8 234-241 215-222 (302)
99 PF12709 Kinetocho_Slk19: Cent 49.4 67 0.0015 26.4 6.2 33 157-196 40-72 (87)
100 PF04728 LPP: Lipoprotein leuc 48.5 63 0.0014 24.6 5.5 31 167-197 4-34 (56)
101 PF07795 DUF1635: Protein of u 48.5 87 0.0019 29.5 7.6 55 142-196 16-70 (214)
102 PHA03162 hypothetical protein; 48.4 27 0.00058 30.8 4.0 24 177-200 17-40 (135)
103 COG4942 Membrane-bound metallo 48.4 1.4E+02 0.0029 30.9 9.5 50 149-198 49-98 (420)
104 PRK11637 AmiB activator; Provi 48.0 1.6E+02 0.0035 29.2 9.9 15 159-173 75-89 (428)
105 PHA03155 hypothetical protein; 47.8 25 0.00054 30.3 3.7 26 159-184 8-33 (115)
106 PLN02320 seryl-tRNA synthetase 47.7 54 0.0012 34.3 6.7 69 142-210 113-181 (502)
107 PF04880 NUDE_C: NUDE protein, 47.0 30 0.00065 31.2 4.2 19 178-196 29-47 (166)
108 PF06424 PRP1_N: PRP1 splicing 47.0 1.5E+02 0.0032 26.0 8.3 22 130-151 58-79 (133)
109 TIGR02894 DNA_bind_RsfA transc 46.8 1.4E+02 0.0029 27.2 8.3 41 156-196 108-148 (161)
110 PF11544 Spc42p: Spindle pole 46.7 1.1E+02 0.0024 24.7 6.9 37 152-188 19-55 (76)
111 PF11559 ADIP: Afadin- and alp 46.7 1.8E+02 0.0039 24.6 9.8 43 141-183 48-90 (151)
112 PF04999 FtsL: Cell division p 46.1 60 0.0013 25.5 5.4 33 168-200 37-69 (97)
113 PRK10803 tol-pal system protei 45.7 1.8E+02 0.0038 27.4 9.3 41 158-198 60-100 (263)
114 PF12718 Tropomyosin_1: Tropom 45.4 71 0.0015 27.6 6.2 28 163-190 18-45 (143)
115 PF12709 Kinetocho_Slk19: Cent 45.4 97 0.0021 25.5 6.5 38 157-194 47-84 (87)
116 PRK09413 IS2 repressor TnpA; R 45.3 83 0.0018 25.9 6.3 31 168-198 73-103 (121)
117 PF14916 CCDC92: Coiled-coil d 44.9 43 0.00093 25.8 4.2 42 159-200 3-48 (60)
118 PHA03162 hypothetical protein; 44.1 19 0.00041 31.8 2.4 28 156-183 10-37 (135)
119 KOG4797 Transcriptional regula 44.0 45 0.00098 28.8 4.6 27 167-193 68-94 (123)
120 PF01920 Prefoldin_2: Prefoldi 44.0 1.3E+02 0.0029 23.2 7.0 42 157-198 60-101 (106)
121 PF14662 CCDC155: Coiled-coil 44.0 2.3E+02 0.0049 26.5 9.5 42 158-199 66-107 (193)
122 smart00338 BRLZ basic region l 43.5 1.3E+02 0.0028 22.1 8.9 22 176-197 29-50 (65)
123 PF10211 Ax_dynein_light: Axon 43.4 2E+02 0.0043 25.9 9.0 16 67-82 69-84 (189)
124 PF14775 NYD-SP28_assoc: Sperm 43.1 1.3E+02 0.0028 22.8 6.5 24 175-198 35-58 (60)
125 TIGR00414 serS seryl-tRNA synt 43.0 98 0.0021 31.1 7.6 65 142-206 50-116 (418)
126 PF13851 GAS: Growth-arrest sp 43.0 86 0.0019 28.5 6.6 22 178-199 98-119 (201)
127 PF05266 DUF724: Protein of un 43.0 2.2E+02 0.0049 25.9 9.2 52 141-192 92-150 (190)
128 PF05529 Bap31: B-cell recepto 42.9 1.7E+02 0.0036 25.8 8.3 34 166-199 154-187 (192)
129 PF05300 DUF737: Protein of un 42.4 1E+02 0.0022 28.3 7.0 47 146-192 121-167 (187)
130 PRK10803 tol-pal system protei 41.8 65 0.0014 30.3 5.8 36 161-196 56-91 (263)
131 PF12999 PRKCSH-like: Glucosid 41.7 1.5E+02 0.0033 27.1 7.9 38 151-188 138-175 (176)
132 PF15035 Rootletin: Ciliary ro 41.7 73 0.0016 28.8 5.9 38 163-200 71-108 (182)
133 KOG0709 CREB/ATF family transc 41.2 96 0.0021 32.4 7.2 61 127-187 243-314 (472)
134 PF11500 Cut12: Spindle pole b 41.2 2.3E+02 0.005 25.4 8.8 49 138-186 84-132 (152)
135 PTZ00454 26S protease regulato 41.1 90 0.002 31.2 7.0 36 159-194 29-64 (398)
136 COG4467 Regulator of replicati 40.9 86 0.0019 27.0 5.8 41 158-198 14-54 (114)
137 PF14197 Cep57_CLD_2: Centroso 40.8 1.3E+02 0.0029 23.2 6.4 13 184-196 51-63 (69)
138 PF13747 DUF4164: Domain of un 40.4 2E+02 0.0042 23.2 8.4 59 134-192 7-65 (89)
139 PF10267 Tmemb_cc2: Predicted 40.4 1.5E+02 0.0033 30.1 8.5 15 229-243 359-373 (395)
140 PF05103 DivIVA: DivIVA protei 40.3 17 0.00037 29.5 1.6 35 159-193 25-59 (131)
141 PF04849 HAP1_N: HAP1 N-termin 40.0 89 0.0019 30.9 6.6 34 165-198 233-266 (306)
142 TIGR03752 conj_TIGR03752 integ 40.0 70 0.0015 33.4 6.1 30 169-198 112-141 (472)
143 PF15619 Lebercilin: Ciliary p 39.8 52 0.0011 30.0 4.7 30 167-196 13-42 (194)
144 PF11932 DUF3450: Protein of u 39.5 3E+02 0.0065 25.3 9.7 36 162-197 45-80 (251)
145 PF07716 bZIP_2: Basic region 39.5 96 0.0021 22.3 5.2 24 175-198 27-50 (54)
146 TIGR02209 ftsL_broad cell divi 39.3 1.4E+02 0.0029 22.7 6.3 32 156-187 28-59 (85)
147 PF15070 GOLGA2L5: Putative go 38.9 1.9E+02 0.0041 31.0 9.2 31 144-174 107-137 (617)
148 PF04859 DUF641: Plant protein 38.7 58 0.0013 28.4 4.6 37 159-195 94-130 (131)
149 TIGR00993 3a0901s04IAP86 chlor 38.5 92 0.002 34.3 6.9 28 146-173 418-445 (763)
150 KOG3540 Beta amyloid precursor 38.3 2.9E+02 0.0063 29.5 10.2 23 175-197 291-313 (615)
151 KOG4797 Transcriptional regula 38.2 72 0.0016 27.6 4.9 29 152-180 67-95 (123)
152 cd07666 BAR_SNX7 The Bin/Amphi 38.1 2.2E+02 0.0047 27.1 8.6 57 140-199 151-207 (243)
153 PRK05431 seryl-tRNA synthetase 38.0 1.3E+02 0.0029 30.2 7.7 48 161-208 68-115 (425)
154 COG2900 SlyX Uncharacterized p 38.0 1.5E+02 0.0033 23.7 6.4 38 159-196 8-45 (72)
155 PTZ00454 26S protease regulato 37.8 1.3E+02 0.0029 30.0 7.6 42 161-202 24-65 (398)
156 PF12325 TMF_TATA_bd: TATA ele 37.6 1.2E+02 0.0025 26.0 6.2 9 137-145 18-26 (120)
157 PF06698 DUF1192: Protein of u 37.2 1E+02 0.0022 23.6 5.1 24 161-184 23-46 (59)
158 PF01486 K-box: K-box region; 37.2 1.8E+02 0.004 23.1 7.0 25 159-183 75-99 (100)
159 PF07888 CALCOCO1: Calcium bin 37.1 2.5E+02 0.0055 29.9 9.7 42 138-179 150-191 (546)
160 KOG0818 GTPase-activating prot 37.0 51 0.0011 35.1 4.6 43 158-200 422-464 (669)
161 KOG4643 Uncharacterized coiled 37.0 80 0.0017 36.1 6.3 40 156-195 527-568 (1195)
162 PF09304 Cortex-I_coil: Cortex 36.8 1.6E+02 0.0034 25.2 6.7 59 139-197 17-75 (107)
163 KOG0977 Nuclear envelope prote 36.8 1.9E+02 0.0041 30.8 8.7 40 161-200 150-189 (546)
164 PF02183 HALZ: Homeobox associ 36.7 1.4E+02 0.003 21.5 5.5 34 164-197 10-43 (45)
165 smart00340 HALZ homeobox assoc 36.2 67 0.0014 23.5 3.8 29 174-202 6-34 (44)
166 PF06210 DUF1003: Protein of u 36.1 2.4E+02 0.0051 23.7 7.7 48 143-190 55-104 (108)
167 PLN02678 seryl-tRNA synthetase 35.9 1.3E+02 0.0028 30.9 7.3 65 142-206 53-118 (448)
168 PF04111 APG6: Autophagy prote 35.4 1E+02 0.0022 29.9 6.2 38 161-198 45-82 (314)
169 PF10805 DUF2730: Protein of u 35.2 2.1E+02 0.0046 23.5 7.2 40 158-197 48-89 (106)
170 KOG3650 Predicted coiled-coil 35.1 1.7E+02 0.0038 25.1 6.7 38 162-199 66-103 (120)
171 KOG1318 Helix loop helix trans 34.9 57 0.0012 33.4 4.5 36 161-196 292-327 (411)
172 cd00632 Prefoldin_beta Prefold 34.5 2E+02 0.0043 23.2 6.8 42 157-198 61-102 (105)
173 PF02185 HR1: Hr1 repeat; Int 34.5 2E+02 0.0043 21.6 6.6 52 138-189 8-63 (70)
174 PF10226 DUF2216: Uncharacteri 34.4 2.8E+02 0.0061 26.0 8.5 37 163-199 105-141 (195)
175 PF14362 DUF4407: Domain of un 33.9 3.5E+02 0.0076 25.3 9.4 23 220-242 262-284 (301)
176 KOG1645 RING-finger-containing 33.8 2.1E+02 0.0044 29.9 8.2 60 133-198 52-111 (463)
177 PF10481 CENP-F_N: Cenp-F N-te 33.7 2E+02 0.0044 28.5 7.8 59 141-199 70-128 (307)
178 PF13807 GNVR: G-rich domain o 33.6 2.1E+02 0.0045 21.9 6.5 20 163-182 8-27 (82)
179 PF13805 Pil1: Eisosome compon 33.4 2.5E+02 0.0055 27.3 8.4 59 141-199 130-191 (271)
180 PF02403 Seryl_tRNA_N: Seryl-t 33.0 88 0.0019 24.9 4.6 19 163-181 71-89 (108)
181 PRK12704 phosphodiesterase; Pr 32.6 3.6E+02 0.0078 28.1 9.9 15 238-252 207-221 (520)
182 PF14197 Cep57_CLD_2: Centroso 32.5 1.3E+02 0.0028 23.3 5.2 19 179-197 39-57 (69)
183 PF12718 Tropomyosin_1: Tropom 32.4 1.7E+02 0.0037 25.3 6.5 36 161-196 23-58 (143)
184 PF11068 YlqD: YlqD protein; 32.3 2.5E+02 0.0053 24.4 7.4 35 156-190 17-51 (131)
185 PF07047 OPA3: Optic atrophy 3 32.3 93 0.002 26.6 4.8 21 159-179 112-132 (134)
186 PF09789 DUF2353: Uncharacteri 32.3 3.1E+02 0.0068 27.2 9.0 39 163-201 76-114 (319)
187 COG4026 Uncharacterized protei 32.2 3.3E+02 0.0071 26.6 8.8 28 171-198 161-188 (290)
188 PF12777 MT: Microtubule-bindi 32.1 2.4E+02 0.0052 27.4 8.1 65 134-198 217-281 (344)
189 KOG4571 Activating transcripti 32.1 2.2E+02 0.0048 28.2 7.8 40 145-184 241-280 (294)
190 PF07334 IFP_35_N: Interferon- 32.0 1E+02 0.0022 24.8 4.6 32 168-199 2-33 (76)
191 PRK09039 hypothetical protein; 32.0 3.4E+02 0.0073 26.7 9.2 26 173-198 130-155 (343)
192 KOG0483 Transcription factor H 31.9 70 0.0015 29.6 4.2 40 161-200 107-146 (198)
193 PF14662 CCDC155: Coiled-coil 31.7 1.2E+02 0.0026 28.2 5.7 33 160-192 9-41 (193)
194 PF14282 FlxA: FlxA-like prote 31.6 1.9E+02 0.0042 23.7 6.4 19 157-175 49-67 (106)
195 TIGR02338 gimC_beta prefoldin, 31.4 2.4E+02 0.0051 23.0 6.9 39 159-197 67-105 (110)
196 COG1382 GimC Prefoldin, chaper 30.9 1.5E+02 0.0033 25.6 5.8 44 149-192 67-110 (119)
197 PF12329 TMF_DNA_bd: TATA elem 30.5 2E+02 0.0044 22.3 6.0 39 159-197 33-71 (74)
198 PF08537 NBP1: Fungal Nap bind 30.5 4.3E+02 0.0092 26.5 9.5 23 137-159 121-143 (323)
199 PF10224 DUF2205: Predicted co 30.3 1.7E+02 0.0037 23.6 5.7 35 162-196 19-53 (80)
200 cd07429 Cby_like Chibby, a nuc 30.3 79 0.0017 26.9 3.9 24 167-190 80-103 (108)
201 PF04156 IncA: IncA protein; 30.2 3.6E+02 0.0079 23.3 9.9 33 147-179 118-150 (191)
202 KOG1853 LIS1-interacting prote 29.9 3.6E+02 0.0078 26.7 8.8 38 141-178 27-64 (333)
203 PF08781 DP: Transcription fac 29.9 2.7E+02 0.0059 24.7 7.3 18 154-171 17-34 (142)
204 COG4985 ABC-type phosphate tra 29.8 2.2E+02 0.0048 27.8 7.2 51 151-201 198-249 (289)
205 PF08961 DUF1875: Domain of un 29.7 18 0.00038 34.5 0.0 32 161-192 131-162 (243)
206 KOG1055 GABA-B ion channel rec 29.6 18 0.0004 39.8 0.1 63 138-200 726-793 (865)
207 PRK14872 rod shape-determining 29.6 1.4E+02 0.003 29.8 6.1 39 159-197 57-98 (337)
208 KOG4001 Axonemal dynein light 29.2 3.1E+02 0.0068 26.3 8.0 21 178-198 233-253 (259)
209 PF07106 TBPIP: Tat binding pr 29.2 1.2E+02 0.0026 26.3 5.0 41 158-198 85-127 (169)
210 cd00890 Prefoldin Prefoldin is 29.2 2.2E+02 0.0048 22.8 6.3 27 170-196 98-124 (129)
211 PF14645 Chibby: Chibby family 29.1 86 0.0019 26.5 4.0 15 168-182 80-94 (116)
212 PF12808 Mto2_bdg: Micro-tubul 29.0 1.9E+02 0.0042 21.6 5.4 25 162-186 25-49 (52)
213 TIGR01242 26Sp45 26S proteasom 29.0 1.2E+02 0.0027 29.0 5.6 36 164-199 4-39 (364)
214 PF05700 BCAS2: Breast carcino 28.9 4.5E+02 0.0099 24.0 9.8 37 162-198 178-214 (221)
215 PF13863 DUF4200: Domain of un 28.9 3.1E+02 0.0068 22.1 9.6 21 176-196 84-104 (126)
216 PRK14154 heat shock protein Gr 28.9 1.6E+02 0.0035 27.5 6.1 11 164-174 71-81 (208)
217 PF05266 DUF724: Protein of un 28.8 4.5E+02 0.0098 23.9 9.4 23 164-186 129-151 (190)
218 PRK11239 hypothetical protein; 28.5 97 0.0021 29.3 4.6 26 162-187 186-211 (215)
219 COG3883 Uncharacterized protei 28.3 4.3E+02 0.0093 25.7 9.0 58 143-203 57-114 (265)
220 PF04599 Pox_G5: Poxvirus G5 p 28.2 2E+02 0.0044 29.7 7.1 26 147-172 87-112 (425)
221 PF03908 Sec20: Sec20; InterP 28.1 2.6E+02 0.0055 22.1 6.4 21 159-179 26-46 (92)
222 PF04102 SlyX: SlyX; InterPro 28.0 2.5E+02 0.0053 21.4 6.0 24 170-193 29-52 (69)
223 PTZ00464 SNF-7-like protein; P 27.9 5E+02 0.011 24.1 9.3 50 147-196 60-118 (211)
224 KOG4593 Mitotic checkpoint pro 27.9 3.3E+02 0.0071 30.1 8.8 68 146-213 485-592 (716)
225 PRK11546 zraP zinc resistance 27.7 4.4E+02 0.0094 23.4 8.5 35 132-166 43-77 (143)
226 TIGR03319 YmdA_YtgF conserved 27.5 4.9E+02 0.011 27.1 9.9 17 236-252 199-215 (514)
227 PF07047 OPA3: Optic atrophy 3 27.5 1.6E+02 0.0035 25.1 5.4 24 162-185 108-131 (134)
228 cd07429 Cby_like Chibby, a nuc 27.4 1.6E+02 0.0035 25.0 5.3 16 163-178 83-98 (108)
229 PRK02119 hypothetical protein; 27.4 3E+02 0.0065 21.4 7.3 24 162-185 5-28 (73)
230 PF06785 UPF0242: Uncharacteri 27.4 1.4E+02 0.003 30.4 5.7 43 155-197 123-172 (401)
231 PF08172 CASP_C: CASP C termin 27.3 1.4E+02 0.003 28.3 5.5 55 135-190 82-138 (248)
232 COG4372 Uncharacterized protei 27.1 5.9E+02 0.013 26.7 10.1 51 143-193 128-178 (499)
233 PF02724 CDC45: CDC45-like pro 27.0 74 0.0016 33.7 4.0 7 73-79 123-129 (622)
234 PF03980 Nnf1: Nnf1 ; InterPr 26.9 1.5E+02 0.0033 23.9 5.0 31 169-199 76-106 (109)
235 PF13879 KIAA1430: KIAA1430 ho 26.9 3E+02 0.0064 21.2 6.8 12 185-196 85-96 (98)
236 PF11471 Sugarporin_N: Maltopo 26.7 1.2E+02 0.0027 23.0 4.1 27 163-189 29-55 (60)
237 PF10481 CENP-F_N: Cenp-F N-te 26.5 4E+02 0.0086 26.5 8.4 36 134-169 14-49 (307)
238 PRK14148 heat shock protein Gr 26.4 2E+02 0.0044 26.5 6.2 34 164-197 45-78 (195)
239 COG0172 SerS Seryl-tRNA synthe 26.1 2.5E+02 0.0053 29.0 7.3 66 142-207 49-116 (429)
240 KOG1656 Protein involved in gl 26.0 1.8E+02 0.004 27.6 5.9 26 141-166 54-79 (221)
241 PF07767 Nop53: Nop53 (60S rib 25.9 5.1E+02 0.011 25.5 9.3 23 32-54 181-203 (387)
242 PRK09343 prefoldin subunit bet 25.7 2.6E+02 0.0057 23.4 6.3 61 132-195 52-114 (121)
243 PF05565 Sipho_Gp157: Siphovir 25.6 2.3E+02 0.0049 24.8 6.2 40 159-198 47-86 (162)
244 KOG1265 Phospholipase C [Lipid 25.6 8.5E+02 0.018 28.2 11.6 62 138-199 1028-1101(1189)
245 PF09486 HrpB7: Bacterial type 25.6 2.7E+02 0.0058 25.0 6.6 40 159-198 79-118 (158)
246 KOG0995 Centromere-associated 25.5 5.4E+02 0.012 27.8 9.8 42 158-199 279-327 (581)
247 PF15058 Speriolin_N: Sperioli 25.5 70 0.0015 30.0 3.0 22 177-198 9-30 (200)
248 COG1730 GIM5 Predicted prefold 25.5 2.5E+02 0.0054 24.9 6.4 35 162-196 104-138 (145)
249 PF11382 DUF3186: Protein of u 25.4 1.7E+02 0.0037 28.3 5.8 40 159-198 32-71 (308)
250 PRK13922 rod shape-determining 25.3 1.3E+02 0.0028 27.9 4.8 25 168-192 71-95 (276)
251 KOG0971 Microtubule-associated 25.3 5.2E+02 0.011 29.9 9.9 60 141-200 283-359 (1243)
252 PRK03992 proteasome-activating 25.2 2.4E+02 0.0052 27.7 6.9 32 162-193 18-49 (389)
253 PRK00106 hypothetical protein; 25.1 5.8E+02 0.013 27.1 9.9 15 238-252 222-236 (535)
254 PF00038 Filament: Intermediat 24.9 4.8E+02 0.01 24.3 8.6 31 167-197 217-247 (312)
255 PF09755 DUF2046: Uncharacteri 24.9 7E+02 0.015 24.9 10.1 24 175-198 180-203 (310)
256 PF09753 Use1: Membrane fusion 24.7 5.6E+02 0.012 23.7 11.2 41 158-198 184-224 (251)
257 KOG1103 Predicted coiled-coil 24.7 1.8E+02 0.0038 30.1 5.9 33 164-196 264-296 (561)
258 PF09325 Vps5: Vps5 C terminal 24.7 3.5E+02 0.0076 23.8 7.3 46 156-201 28-73 (236)
259 PF09311 Rab5-bind: Rabaptin-l 24.6 41 0.00089 29.9 1.4 37 163-199 12-48 (181)
260 PF05769 DUF837: Protein of un 24.5 99 0.0022 28.0 3.8 22 176-197 156-177 (181)
261 TIGR01010 BexC_CtrB_KpsE polys 24.4 6.4E+02 0.014 24.2 11.4 16 218-233 339-354 (362)
262 PRK14143 heat shock protein Gr 24.4 2.2E+02 0.0048 27.0 6.2 9 166-174 88-96 (238)
263 PF13094 CENP-Q: CENP-Q, a CEN 24.3 3.6E+02 0.0078 23.1 7.1 15 175-189 64-78 (160)
264 KOG1319 bHLHZip transcription 24.1 5E+02 0.011 24.6 8.3 44 160-203 113-156 (229)
265 KOG0946 ER-Golgi vesicle-tethe 23.9 5.9E+02 0.013 28.9 10.0 57 141-197 653-716 (970)
266 PF10805 DUF2730: Protein of u 23.7 2.2E+02 0.0047 23.4 5.3 39 162-200 45-85 (106)
267 KOG4378 Nuclear protein COP1 [ 23.5 78 0.0017 33.8 3.3 22 174-195 651-672 (673)
268 TIGR03495 phage_LysB phage lys 23.3 3.6E+02 0.0077 23.7 6.8 22 175-196 77-98 (135)
269 PF11180 DUF2968: Protein of u 23.3 5E+02 0.011 24.3 8.1 16 37-52 23-38 (192)
270 PF04728 LPP: Lipoprotein leuc 23.1 3.4E+02 0.0075 20.7 6.4 33 161-193 5-37 (56)
271 PF05557 MAD: Mitotic checkpoi 23.0 2.7E+02 0.0058 29.8 7.2 22 179-200 565-586 (722)
272 PF13600 DUF4140: N-terminal d 22.7 2.5E+02 0.0054 22.2 5.4 10 186-195 90-99 (104)
273 PRK09343 prefoldin subunit bet 22.7 3.9E+02 0.0085 22.4 6.8 39 161-199 73-111 (121)
274 TIGR00293 prefoldin, archaeal 22.7 3.1E+02 0.0067 22.4 6.1 15 167-181 101-115 (126)
275 KOG2072 Translation initiation 22.6 6.8E+02 0.015 28.6 10.1 56 144-199 614-689 (988)
276 cd04776 HTH_GnyR Helix-Turn-He 22.6 4.4E+02 0.0096 21.7 7.3 32 161-192 82-113 (118)
277 PF14915 CCDC144C: CCDC144C pr 22.6 3E+02 0.0066 27.4 6.9 47 152-198 21-81 (305)
278 PF14077 WD40_alt: Alternative 22.5 74 0.0016 23.7 2.1 22 157-178 16-37 (48)
279 PF15188 CCDC-167: Coiled-coil 22.4 1.3E+02 0.0029 24.5 3.8 28 163-190 40-67 (85)
280 KOG4786 Ubinuclein, nuclear pr 22.3 98 0.0021 34.5 3.8 21 59-79 52-72 (1136)
281 TIGR03689 pup_AAA proteasome A 22.2 2.5E+02 0.0054 29.4 6.6 40 162-201 4-43 (512)
282 PF05103 DivIVA: DivIVA protei 22.1 34 0.00074 27.8 0.3 39 160-198 33-71 (131)
283 PF04201 TPD52: Tumour protein 22.1 2.3E+02 0.005 25.8 5.6 26 171-196 41-66 (162)
284 PF08946 Osmo_CC: Osmosensory 22.1 1.9E+02 0.0042 21.4 4.1 30 158-187 11-40 (46)
285 COG1730 GIM5 Predicted prefold 22.1 2.6E+02 0.0057 24.7 5.8 43 139-181 95-137 (145)
286 PRK03947 prefoldin subunit alp 22.0 2.7E+02 0.0058 23.2 5.8 30 164-193 106-135 (140)
287 PRK14160 heat shock protein Gr 21.9 3.2E+02 0.007 25.5 6.7 38 161-198 63-100 (211)
288 PRK04406 hypothetical protein; 21.7 4E+02 0.0087 20.9 7.3 24 162-185 7-30 (75)
289 PF12128 DUF3584: Protein of u 21.3 6.3E+02 0.014 28.9 10.0 66 135-200 465-531 (1201)
290 KOG0288 WD40 repeat protein Ti 21.2 7.3E+02 0.016 26.0 9.5 25 157-181 46-70 (459)
291 PF08647 BRE1: BRE1 E3 ubiquit 21.1 4.4E+02 0.0096 21.2 9.7 61 140-200 5-72 (96)
292 PF07989 Microtub_assoc: Micro 21.0 4.2E+02 0.009 20.8 6.6 29 170-198 40-68 (75)
293 PF11221 Med21: Subunit 21 of 21.0 3.4E+02 0.0073 23.3 6.2 35 164-198 102-136 (144)
294 PF09728 Taxilin: Myosin-like 20.9 7.8E+02 0.017 23.9 9.9 46 143-188 55-100 (309)
295 cd07627 BAR_Vps5p The Bin/Amph 20.9 3.9E+02 0.0083 24.1 6.9 33 155-187 7-39 (216)
296 PF09304 Cortex-I_coil: Cortex 20.7 5.4E+02 0.012 22.0 9.9 42 150-191 7-48 (107)
297 PF13805 Pil1: Eisosome compon 20.4 3.3E+02 0.0072 26.5 6.7 52 137-188 143-194 (271)
298 PRK14161 heat shock protein Gr 20.1 3.2E+02 0.007 24.7 6.2 36 162-197 22-57 (178)
299 PF04999 FtsL: Cell division p 20.1 4E+02 0.0087 20.8 6.1 28 161-188 44-71 (97)
No 1
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=99.58 E-value=1.5e-15 Score=150.32 Aligned_cols=105 Identities=27% Similarity=0.315 Sum_probs=82.3
Q ss_pred CCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccc
Q 022379 131 NADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQE 210 (298)
Q Consensus 131 ~~Dd~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g~~~~~qe 210 (298)
..+++..||.||+|||++|||.||+|||+|++.||.||...+.||++|+++++.|..+|+.|.+||.+.++.......
T Consensus 244 KaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an-- 321 (472)
T KOG0709|consen 244 KAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVAN-- 321 (472)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhccc--
Confidence 356788999999999999999999999999999999999999999999999999999999999999998876433222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhc--CCCcccc
Q 022379 211 SAVLLLESLLLGSLLWFLGIMCLFT--LPKPIWS 242 (298)
Q Consensus 211 sAVlll~sl~L~sllw~L~i~cLl~--~P~~~~~ 242 (298)
.+ ...+.|+++++ ..+|+++ +|.++..
T Consensus 322 ~s-~qt~tC~av~~----lS~~l~~s~lp~~~~~ 350 (472)
T KOG0709|consen 322 KS-TQTSTCLAVLL----LSFCLLLSTLPCFSEF 350 (472)
T ss_pred ch-hccchhHHHHH----HHHHHHHhhccccccc
Confidence 11 11234566633 3344444 6665544
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=99.48 E-value=3.2e-13 Score=100.44 Aligned_cols=63 Identities=41% Similarity=0.523 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 135 ~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
+..|+.+|+++||+||++||.||+.|+.+||.++..|+.+|..|..++..|..||..|++++.
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~~ 64 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSELE 64 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345889999999999999999999999999999999999999999999999999999999873
No 3
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.44 E-value=5e-13 Score=134.70 Aligned_cols=102 Identities=27% Similarity=0.435 Sum_probs=74.0
Q ss_pred CCCCCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Q 022379 125 NDTDNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG----- 199 (298)
Q Consensus 125 ~~~~~~~~Dd~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~----- 199 (298)
.-+...+.|.+..||+.||||||+||++||+|||+|+..||.+++.|.+||.+| .+||..||+||...
T Consensus 268 ~stp~~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~L-------k~ENatLk~qL~~l~~En~ 340 (655)
T KOG4343|consen 268 SSTPNVGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQL-------KKENATLKRQLDELVSENQ 340 (655)
T ss_pred CCCCCCccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHHHHhhcCc
Confidence 456678889999999999999999999999999999999999999888887766 46677777776543
Q ss_pred -----ccCCCcccccchhhHHHHHHHHHHHHHHHH-HHhhhc
Q 022379 200 -----NAYGASLTKQESAVLLLESLLLGSLLWFLG-IMCLFT 235 (298)
Q Consensus 200 -----~a~g~~~~~qesAVlll~sl~L~sllw~L~-i~cLl~ 235 (298)
+..|.+..+.+-.|+.| +++.|+++++| +|.+..
T Consensus 341 ~~kvpsp~~~~qKk~Rkvvaim--v~maFi~f~~~~p~ni~n 380 (655)
T KOG4343|consen 341 RLKVPSPKGRNQKKKRKVVAIM--VVMAFIIFNYGSPMNILN 380 (655)
T ss_pred ccccCCCcccccccchhhhhHH--HHHHHHHHhccCcccccC
Confidence 22334444445556644 45555555554 444433
No 4
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.37 E-value=4.3e-12 Score=94.27 Aligned_cols=62 Identities=45% Similarity=0.528 Sum_probs=57.0
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 135 ~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
+..|+.+|+++||+||++||.|||.|+..||.++..|+.+|..|...+..|..++..|+.++
T Consensus 2 ~~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 2 KEDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45688999999999999999999999999999999999999999999999999999998765
No 5
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.29 E-value=4.9e-12 Score=120.30 Aligned_cols=59 Identities=32% Similarity=0.432 Sum_probs=53.6
Q ss_pred CCCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 128 DNDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVL 186 (298)
Q Consensus 128 ~~~~~Dd~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~ 186 (298)
..-..|+...||+.|++|||+||++||+|||+||++||.||..||.+|+.|-+.|..|.
T Consensus 281 p~~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLK 339 (348)
T KOG3584|consen 281 PTQGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLK 339 (348)
T ss_pred CCccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHH
Confidence 44567788899999999999999999999999999999999999999999988877664
No 6
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.09 E-value=7e-10 Score=80.45 Aligned_cols=52 Identities=40% Similarity=0.498 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 136 ISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAE 188 (298)
Q Consensus 136 e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~E 188 (298)
+.++.+|. +||.||++||+|||+|+.+||.++..|+.+|..|..++..|..|
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45667777 99999999999999999999999999999999999998888765
No 7
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=98.99 E-value=1.7e-09 Score=100.97 Aligned_cols=68 Identities=31% Similarity=0.355 Sum_probs=59.6
Q ss_pred CCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 022379 130 DNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRK-------LGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 130 ~~~Dd~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~-------L~~ql~~L~~ENq~LRqqL~ 197 (298)
-+.-..++|-+||++|||+|||.+|+|||+++.++|..+++|+.+|.. |+++.+.|..+|+.|++.|.
T Consensus 61 L~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le 135 (292)
T KOG4005|consen 61 LDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELE 135 (292)
T ss_pred hcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 466788899999999999999999999999999999999998887655 56777788899999988886
No 8
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.28 E-value=3.4e-06 Score=79.73 Aligned_cols=76 Identities=28% Similarity=0.285 Sum_probs=67.1
Q ss_pred CCCCChhHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q 022379 130 DNADDPISKKRRR-QLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGAS 205 (298)
Q Consensus 130 ~~~Dd~e~KR~RR-llRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g~~ 205 (298)
-+.++.+..|..| .+|||++|.+||+||-+++..||.+|+.+..+|..|...+..|...-.+++|++..+-++|+.
T Consensus 197 id~e~qe~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~~hi~ngc~ 273 (279)
T KOG0837|consen 197 IDMEDQEKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVMEHIHNGCQ 273 (279)
T ss_pred ccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4566677766644 789999999999999999999999999999999999999999999999999999887766654
No 9
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=97.99 E-value=7.2e-08 Score=76.76 Aligned_cols=55 Identities=33% Similarity=0.381 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAEN 189 (298)
Q Consensus 135 ~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~EN 189 (298)
...|..||.+|||.+|+.||.||+.++.+||..+..|..+...|..++..+..|.
T Consensus 27 ~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~ 81 (92)
T PF03131_consen 27 AELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQER 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4558889999999999999999999999999998877666555554444444433
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.82 E-value=0.00011 Score=70.39 Aligned_cols=64 Identities=25% Similarity=0.237 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 135 ~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
++.+.+|..++|+.||.|-|+|||+-.+.|+.++..|+.+|.+|+.++..+..|-+.|||-+..
T Consensus 224 ~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 224 PEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445567788899999999999999999999999999999999999999999999998754
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.65 E-value=0.00034 Score=65.69 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022379 135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (298)
Q Consensus 135 ~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a 201 (298)
+..+-..|..||-+||++||.+.|.-..+...|+..|+.||..|+.++.+|..|+..||+-+.....
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~ 257 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPK 257 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3334445667899999999999999999999999999999999999999999999999998876443
No 12
>PRK10884 SH3 domain-containing protein; Provisional
Probab=97.02 E-value=0.01 Score=54.27 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccchhhHHHHHHHHHHHHHHHHHHhhhcC
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQESAVLLLESLLLGSLLWFLGIMCLFTL 236 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g~~~~~qesAVlll~sl~L~sllw~L~i~cLl~~ 236 (298)
.+.-+..++..+..|+++|++|++++..++++|..|++++...... ..+.-.+.|..+-++|+++=+++
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~-----------~~~~wf~~Gg~v~~~GlllGlil 191 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT-----------IIMQWFMYGGGVAGIGLLLGLLL 191 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHchHHHHHHHHHHHHh
Confidence 3444556666677788888888888888888888888887654432 33556677777778899999999
Q ss_pred CCcccc
Q 022379 237 PKPIWS 242 (298)
Q Consensus 237 P~~~~~ 242 (298)
|+|.++
T Consensus 192 p~l~pr 197 (206)
T PRK10884 192 PHLIPR 197 (206)
T ss_pred cccccc
Confidence 998543
No 13
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=96.94 E-value=0.0058 Score=53.08 Aligned_cols=67 Identities=22% Similarity=0.206 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 022379 136 ISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAY 202 (298)
Q Consensus 136 e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~ 202 (298)
-.|.+||-+|||=-|+-||-|+-..-.+||.+...|.+|..+|.+.+..+..|--.++..+......
T Consensus 51 rlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 51 RLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4577789999999999999999987777777776666666666666666666666666655554433
No 14
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.07 E-value=0.0086 Score=62.48 Aligned_cols=58 Identities=26% Similarity=0.223 Sum_probs=46.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 141 RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
||+=|||.|||++|+||-.-|..||..+..|..+-.+|.+.=..+.++-..++++|..
T Consensus 493 RRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~~L~~~kqqls~ 550 (604)
T KOG3863|consen 493 RRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDSTLGVMKQQLSE 550 (604)
T ss_pred ccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777899999999999999999999999999888777765555555666666666643
No 15
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=94.93 E-value=0.0013 Score=64.80 Aligned_cols=75 Identities=23% Similarity=0.189 Sum_probs=68.0
Q ss_pred CCCCCCChhHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 022379 128 DNDNADDPISKKRRRQLRNRDAAVR---SRERKKMYVKDLEMKSRYLE-SECRKLGRLLHCVLAENQSLRFSLQKGNAY 202 (298)
Q Consensus 128 ~~~~~Dd~e~KR~RRllRNReSAqr---SR~RKK~YV~eLE~kvk~LE-~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~ 202 (298)
.+.-...++.|+..|..+|+.+|.+ +|.|++.|...|..+++.|+ ..+..|..+++.|..|++.|...+..++..
T Consensus 144 ~~~~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~~~l~~~l~~h~~~ 222 (395)
T KOG1414|consen 144 PSVLTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEADHLEKELNTHRPP 222 (395)
T ss_pred CCCCCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHHHHHHHHHhccCCC
Confidence 4445567888999999999999999 99999999999999999999 999999999999999999999999876554
No 16
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=93.28 E-value=0.015 Score=57.35 Aligned_cols=62 Identities=37% Similarity=0.439 Sum_probs=50.3
Q ss_pred CChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 022379 133 DDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLG-RLLHCVLAENQSLRF 194 (298)
Q Consensus 133 Dd~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~-~ql~~L~~ENq~LRq 194 (298)
.++.+++++-+.|||.||.++|+|||.++..|+.+...+..+|..|. ..++.|..+...+.+
T Consensus 280 ~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~~~~~ 342 (395)
T KOG1414|consen 280 EDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVKQLSQ 342 (395)
T ss_pred CCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHhhhcc
Confidence 34445556668899999999999999999999999999999999998 556666666665543
No 17
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=90.94 E-value=0.74 Score=38.43 Aligned_cols=40 Identities=30% Similarity=0.316 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhc
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAE-------NQSLRFSLQKG 199 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~E-------Nq~LRqqL~~~ 199 (298)
.+..||.++..+..+...|+.++..|..| |..||.+|...
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777776666555 55555555543
No 18
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=88.49 E-value=1.6 Score=41.13 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 154 RERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 154 R~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
|+|=|....+||.+++.+.+++..|+.++..|++.|..|=.++...+
T Consensus 88 RDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 88 RDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556667999999999999999999999999999999988876643
No 19
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=88.10 E-value=1.6 Score=36.75 Aligned_cols=40 Identities=30% Similarity=0.236 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCV-------LAENQSLRFSLQKG 199 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L-------~~ENq~LRqqL~~~ 199 (298)
.+..||..+..+..+...|+.++..+ ..||+.||..|...
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777766666666666554 55555556666553
No 20
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.19 E-value=2.7 Score=32.87 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
+.-|..++..|..+|..|......|..||+.|++.-
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555666666666666543
No 21
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=85.75 E-value=2.2 Score=39.47 Aligned_cols=44 Identities=27% Similarity=0.182 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
Q 022379 156 RKKMYVKDLEMKSRYLESECRKLGRLLH---CVLAENQSLRFSLQKG 199 (298)
Q Consensus 156 RKK~YV~eLE~kvk~LE~EN~~L~~ql~---~L~~ENq~LRqqL~~~ 199 (298)
..-.+..+|.++.+.|++||.+|+.++. .++.||.+||..|...
T Consensus 66 ~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 66 ESLASLFDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3445567788888888888888877666 7899999999988653
No 22
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.73 E-value=2.4 Score=30.49 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 163 eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
.||..+..|......|......|..||+.|+.++....
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~ 39 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELK 39 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888999999999999999999999999987654
No 23
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=84.55 E-value=3 Score=31.16 Aligned_cols=45 Identities=20% Similarity=0.191 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 156 RKKMYVKDLEMKSRYLES----ECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 156 RKK~YV~eLE~kvk~LE~----EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
|+...+.+||.+++.-.+ ........+..|..||..|+.+|...+
T Consensus 1 kw~~Rl~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 1 KWLLRLEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred CHHHHHHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356678888888775331 245678899999999999999997643
No 24
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=84.11 E-value=4.6 Score=31.36 Aligned_cols=39 Identities=23% Similarity=0.037 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.|+.|=..+..|..+|..|..++..+..|+..|..+...
T Consensus 8 kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~ 46 (65)
T TIGR02449 8 QVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQ 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666778888888888888899998888877643
No 25
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=82.17 E-value=17 Score=31.87 Aligned_cols=63 Identities=24% Similarity=0.261 Sum_probs=55.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
+.......|++.+-.--.-+|+.+..|+.++..++.+.+.|...+..+..|+..|-+.|+..+
T Consensus 31 reLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q 93 (140)
T PF10473_consen 31 RELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ 93 (140)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456678888888888899999999999999999999999999999999999999998754
No 26
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=81.57 E-value=5.8 Score=33.15 Aligned_cols=30 Identities=20% Similarity=0.133 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLA 187 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ 187 (298)
|.++..|..+...|.-||..|++++..+..
T Consensus 28 K~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 28 KKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445566666666666666666666655544
No 27
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=81.23 E-value=4.1 Score=38.71 Aligned_cols=38 Identities=29% Similarity=0.249 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhc
Q 022379 162 KDLEMKSRYLESECRKLGRLLH----CVLAENQSLRFSLQKG 199 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~----~L~~ENq~LRqqL~~~ 199 (298)
.+|+++.+.|..|+.+|+.++. .++.||.+||+.|...
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 4566777777777666644333 3899999999988653
No 28
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=80.53 E-value=2.9 Score=32.14 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 167 kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+|..|..++.+|..++..|..||..||+....
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~~~~p 46 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQNASP 46 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 46677788888888888889999999987643
No 29
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=79.33 E-value=5.1 Score=34.28 Aligned_cols=39 Identities=31% Similarity=0.341 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.|..||..+-.+-+|...|++++..+..||..||-...+
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~ 47 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEK 47 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHH
Confidence 467899999988888888888888877777777655444
No 30
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.14 E-value=39 Score=31.10 Aligned_cols=37 Identities=5% Similarity=0.062 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
+.+|+.+.+.|.+++..++.++..+..+|..++....
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555554443
No 31
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=79.00 E-value=7.9 Score=32.70 Aligned_cols=29 Identities=24% Similarity=0.145 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCV 185 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L 185 (298)
=|.++.+|..+...|+-||..|++.+..+
T Consensus 27 LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 27 LKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777888888888777765
No 32
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=78.98 E-value=1.9 Score=45.38 Aligned_cols=44 Identities=25% Similarity=0.252 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 155 ~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.-=+..++.|+.++..|..||..|++++..|..||+.|+---..
T Consensus 305 ~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~ 348 (655)
T KOG4343|consen 305 LGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPK 348 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCc
Confidence 34566777888888888888888888888888888888654433
No 33
>PRK00295 hypothetical protein; Provisional
Probab=78.33 E-value=9.9 Score=29.22 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
.+.+||.++...+..+..|...|.....+...|+.+|
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql 42 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQM 42 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999888777777555544444444444444
No 34
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=76.99 E-value=12 Score=33.77 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 163 eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.|+.+.+.|+.++.+|+.++..|..||..|.+++..
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~ 136 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELEKLRQRLST 136 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666777777776666543
No 35
>PRK02793 phi X174 lysis protein; Provisional
Probab=76.79 E-value=11 Score=29.20 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLL-------HCVLAENQSLRFSLQK 198 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql-------~~L~~ENq~LRqqL~~ 198 (298)
+++.+||.++...+.-+..|...| ..|..+-+.|..+|..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578899999988887777765544 4455555555555544
No 36
>PRK04325 hypothetical protein; Provisional
Probab=76.69 E-value=11 Score=29.35 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
.++.+||.++...+..+..|...|..-..+...|+.+|
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql 46 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQL 46 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999888877777555544444444444444
No 37
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.55 E-value=7.5 Score=31.18 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
+++|-.+...|+++.+.++.+...|..||..|+++-
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~ 62 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ 62 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555556666667777777776654
No 38
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=76.41 E-value=14 Score=28.20 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcc
Q 022379 159 MYVKDLEMKSRYLESECRKLG-------RLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~-------~ql~~L~~ENq~LRqqL~~~~ 200 (298)
.++.+||.++..++..+.+|. +++..|..+.+.|+.+|....
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578899999988877777664 445556666666666655433
No 39
>PRK04406 hypothetical protein; Provisional
Probab=76.35 E-value=12 Score=29.51 Aligned_cols=40 Identities=15% Similarity=0.164 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLL-------HCVLAENQSLRFSLQK 198 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql-------~~L~~ENq~LRqqL~~ 198 (298)
.++.+||.++...+.-+..|...| ..|..+-+.|.++|..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478899999988877777765444 4455555555555543
No 40
>PRK02119 hypothetical protein; Provisional
Probab=76.24 E-value=12 Score=29.21 Aligned_cols=43 Identities=16% Similarity=0.194 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcc
Q 022379 158 KMYVKDLEMKSRYLESECRKLG-------RLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~-------~ql~~L~~ENq~LRqqL~~~~ 200 (298)
..++.+||.++...+..+..|. +++..|..+-+.|+++|....
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4578899999988777766664 445556666666666665433
No 41
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=75.80 E-value=12 Score=29.24 Aligned_cols=40 Identities=23% Similarity=0.190 Sum_probs=23.9
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 160 YVKDLEMKSRY-------LESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 160 YV~eLE~kvk~-------LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
-+..||.|+.. |+.++.+|+++...|..+|..|+....+.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L 51 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 35677777765 44455555555555555566666665543
No 42
>PF15058 Speriolin_N: Speriolin N terminus
Probab=75.50 E-value=7 Score=36.33 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
+.|-++++.|-.||.+|+++|. |..||++||.-|...
T Consensus 8 eGlrhqierLv~ENeeLKKlVr-LirEN~eLksaL~ea 44 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVR-LIRENHELKSALGEA 44 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 4566778888899999998885 667899999987653
No 43
>PRK00736 hypothetical protein; Provisional
Probab=75.20 E-value=13 Score=28.48 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhc
Q 022379 159 MYVKDLEMKSRYLESECRKLG-------RLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~-------~ql~~L~~ENq~LRqqL~~~ 199 (298)
.++.+||.++...+.-+..|. +++..|..+-+.|..+|...
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458999999988777766664 44555555556665555443
No 44
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=74.68 E-value=31 Score=30.68 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 153 SRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 153 SR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
.|++....+..+| ..++++++.|..++..|..+|..|...+....
T Consensus 72 ~r~~~e~~l~~~E---d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~ 116 (158)
T PF09744_consen 72 LRKQAEEELLELE---DQWRQERKDLQSQVEQLEEENRQLELKLKNLS 116 (158)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3444444444444 46677889999999999999999998776543
No 45
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=72.83 E-value=40 Score=25.80 Aligned_cols=51 Identities=22% Similarity=0.183 Sum_probs=32.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 144 LRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (298)
Q Consensus 144 lRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRq 194 (298)
||.+++.+.-=.+=|.-...+|.+++..+..|..|..+|..|..+-..||.
T Consensus 10 irakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 10 IRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455555555444555555667777777777777777777777776666553
No 46
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=72.18 E-value=26 Score=37.76 Aligned_cols=36 Identities=22% Similarity=0.183 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqq 195 (298)
...+||.+++.|+.+.....+++..+..|.+.||..
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666677777777777777765
No 47
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=71.89 E-value=48 Score=28.46 Aligned_cols=60 Identities=22% Similarity=0.107 Sum_probs=54.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 141 RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
.|..|.|.+.---|.==|+.|..||-+.+.++.-+..|.+.|..|...+...|..+....
T Consensus 14 ~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 14 HRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 477888999999999999999999999999999999999999999999999999987643
No 48
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=71.87 E-value=12 Score=27.70 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 171 LESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 171 LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+..+...|+.+++.+..+|..|++++..
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~ 49 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIER 49 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443
No 49
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=70.74 E-value=52 Score=29.92 Aligned_cols=61 Identities=23% Similarity=0.247 Sum_probs=48.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 137 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 137 ~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
-...++.+++-+.-..+=..-|..+..++.+++.|+-++..|..++..+..|-..|..+..
T Consensus 71 ~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 71 VEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777777778888888888888888888888888888888888876653
No 50
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=70.57 E-value=11 Score=29.23 Aligned_cols=30 Identities=23% Similarity=0.188 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 170 YLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
.|+....+|-...+.|..||..||+++...
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~ 33 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTW 33 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566667777788899999888654
No 51
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=70.22 E-value=12 Score=36.71 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.|+=.+|.+.+.+..|+-.|..|+..|+..|..+|+++..
T Consensus 64 ~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~ 103 (389)
T PF06216_consen 64 DYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIRE 103 (389)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778889999999999999999999999999999999976
No 52
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=68.12 E-value=21 Score=28.93 Aligned_cols=12 Identities=25% Similarity=0.216 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHH
Q 022379 185 VLAENQSLRFSL 196 (298)
Q Consensus 185 L~~ENq~LRqqL 196 (298)
|..||+.|++..
T Consensus 51 L~~en~qLk~E~ 62 (79)
T PRK15422 51 LERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHH
Confidence 555666666554
No 53
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=67.66 E-value=45 Score=31.06 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=44.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 137 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 137 ~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
.+|.||....+.++-.-+-+ -+.+.-.+++..-.|+..|+...+.|+.+|+.||.-+
T Consensus 22 ~~rLR~~E~ek~~~m~~~g~---lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 22 VRRLRRAEAEKMSLMVEHGR---LMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777665543 4667777888888888899999999999999999776
No 54
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=67.52 E-value=13 Score=30.68 Aligned_cols=31 Identities=10% Similarity=-0.038 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLA 187 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ 187 (298)
.++.+..++.++..++++|..|+.++..|..
T Consensus 32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4444555555555555566666555555543
No 55
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=67.16 E-value=58 Score=28.16 Aligned_cols=48 Identities=25% Similarity=0.185 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcccCCCccc
Q 022379 160 YVKDLEMKSRYLESE--CRKLGRLLHCVLAENQSLRFSLQKGNAYGASLT 207 (298)
Q Consensus 160 YV~eLE~kvk~LE~E--N~~L~~ql~~L~~ENq~LRqqL~~~~a~g~~~~ 207 (298)
.+..|+.+++.|... +.+|..++..|..|+..|..+|......+..++
T Consensus 94 ~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs 143 (169)
T PF07106_consen 94 EVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVS 143 (169)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 344555555555443 567789999999999999999988776444433
No 56
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=65.16 E-value=26 Score=26.51 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
+.+||.++..++.....++.+++.+..+...+.+.+
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666555554444444444444444443333
No 57
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=65.10 E-value=14 Score=27.95 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 167 kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
|+..+|.+...+...+..++.||+.|+..+...
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888888888888887654
No 58
>PRK00846 hypothetical protein; Provisional
Probab=64.83 E-value=30 Score=27.64 Aligned_cols=42 Identities=19% Similarity=0.112 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhc
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLLH-------CVLAENQSLRFSLQKG 199 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql~-------~L~~ENq~LRqqL~~~ 199 (298)
.+++.+||.++...+.-+..|...+. .|..+-+.|..+|...
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788999999877766666654444 4444445555555443
No 59
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=64.46 E-value=31 Score=26.25 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 169 RYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
..+..+...++.++..+..||..|+.+...
T Consensus 27 ~~~~~~~~~~~~~~~~l~~en~~L~~ei~~ 56 (85)
T TIGR02209 27 RQLNNELQKLQLEIDKLQKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555544
No 60
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=64.41 E-value=16 Score=32.25 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 170 YLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
.||.++..|+.+|+.|..||..++..+....
T Consensus 78 eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999996543
No 61
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=63.83 E-value=56 Score=24.04 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAEN 189 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~EN 189 (298)
...+..|+.+...|..++..|...+..|..+|
T Consensus 32 e~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 32 EEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34456666666666666666666666666665
No 62
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=63.49 E-value=13 Score=30.13 Aligned_cols=31 Identities=23% Similarity=0.159 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLA 187 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ 187 (298)
|+.++..|..++..++.+|..|..+|..+..
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5777888999999999998888888776654
No 63
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=63.23 E-value=20 Score=34.19 Aligned_cols=42 Identities=24% Similarity=0.201 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Q 022379 157 KKMYVKDLEMKSRYLESECRK---LGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~---L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+-.+..++..+.+.|..++.+ +..+++.|++||++||..|..
T Consensus 64 ~~~~~~~~~~en~~Lk~~l~~~~~~~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 64 FLKSLKDLALENEELKKELAELEQLLEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344455555566666665544 456678899999999999855
No 64
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=62.82 E-value=55 Score=26.32 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
.+..|..-+..|-.....-++....|..||+.|.+.+..+
T Consensus 24 ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 24 EILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666677777788888888888664
No 65
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=61.25 E-value=22 Score=29.00 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhcccC
Q 022379 164 LEMKSRYLESECRKLGRLL------HCVLAENQSLRFSLQKGNAY 202 (298)
Q Consensus 164 LE~kvk~LE~EN~~L~~ql------~~L~~ENq~LRqqL~~~~a~ 202 (298)
++...+.|..|++-|+.++ .....||..|+.++...+..
T Consensus 22 ~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f 66 (86)
T PF12711_consen 22 LEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSF 66 (86)
T ss_pred hHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444467777777777654 46889999999999876643
No 66
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=61.16 E-value=46 Score=31.60 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 022379 176 RKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 176 ~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.+++.++..|..||..||.++..
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~ 240 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQ 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666555544
No 67
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=60.84 E-value=86 Score=26.47 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=39.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 137 SKKRRRQLRNRDAAVRSRERKKM-YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (298)
Q Consensus 137 ~KR~RRllRNReSAqrSR~RKK~-YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRq 194 (298)
.|+----.+.+.++-...-|.|+ -+..+|.++..|...|++|.+++..|+.|-.....
T Consensus 17 LKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~ 75 (102)
T PF10205_consen 17 LKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESEQ 75 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34443344555555555555555 67788888888888888888888888887664433
No 68
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=60.62 E-value=1.2e+02 Score=26.93 Aligned_cols=28 Identities=21% Similarity=0.143 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 171 LESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 171 LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
|.-++..+..++..|..||..|-+++..
T Consensus 156 L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 156 LQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566678888888888888887744
No 69
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=60.33 E-value=24 Score=37.92 Aligned_cols=14 Identities=14% Similarity=0.003 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 022379 184 CVLAENQSLRFSLQ 197 (298)
Q Consensus 184 ~L~~ENq~LRqqL~ 197 (298)
.+..++..|+..|.
T Consensus 478 ~~~~~I~~L~~~L~ 491 (652)
T COG2433 478 ARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444445554443
No 70
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=60.08 E-value=14 Score=31.79 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 022379 176 RKLGRLLHCVLAENQSLRFSLQKGNA 201 (298)
Q Consensus 176 ~~L~~ql~~L~~ENq~LRqqL~~~~a 201 (298)
.+|..+|+.|+.||..|+++|....+
T Consensus 6 EeLaaeL~kLqmENk~LKkkl~~~~~ 31 (118)
T PF05812_consen 6 EELAAELQKLQMENKALKKKLRQSVG 31 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 46777888889999999999987664
No 71
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=59.63 E-value=26 Score=32.90 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 155 ~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
++|+.+++.++.++..|+.+...++..-..|.+||+.|+.++...
T Consensus 168 ~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 168 EKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 346667788888888888888888888899999999999998653
No 72
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=59.15 E-value=72 Score=31.05 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 174 ECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 174 EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+|++|...+..+..|-..|+++.+.
T Consensus 126 ~n~el~~~le~~~~~l~~~~~~~~~ 150 (292)
T KOG4005|consen 126 KNHELDSELELLRQELAELKQQQQH 150 (292)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3555556666666666666666544
No 73
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.73 E-value=27 Score=27.95 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 170 YLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
.+..++..|+.+...+..+|..|++++.
T Consensus 72 ~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 72 LLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566778888888899999999988763
No 74
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=58.64 E-value=1.1e+02 Score=28.16 Aligned_cols=49 Identities=18% Similarity=0.098 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 151 VRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 151 qrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
...++.-+.-+..|+.++..|+..|.+++..+.....+-..|.+++...
T Consensus 48 ~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~ 96 (251)
T PF11932_consen 48 DDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI 96 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666677777777777777777777777777777777553
No 75
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=57.95 E-value=38 Score=28.18 Aligned_cols=39 Identities=28% Similarity=0.311 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
..+|-..++..+.|-.-|++.+..+..+|..|..+|.+.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~ky 41 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKY 41 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777888889998999999999999999999999874
No 76
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=57.54 E-value=42 Score=27.23 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
-+..||.|++..-..+.-|+-.+..|..+|..|.+....
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888887777777777777777777777776544
No 77
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=57.52 E-value=29 Score=25.63 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLA 187 (298)
Q Consensus 155 ~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ 187 (298)
.+.+..+..|+.++..++.+|..|+.+++.|..
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566788888888888888888888888833
No 78
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=57.46 E-value=52 Score=32.51 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 148 DAAVRSRERKKMYVKDLEMKSR-------YLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 148 eSAqrSR~RKK~YV~eLE~kvk-------~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
+++|+-.....-.++++|.... .+...-..+++++.+|+.||.-|||||--..
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~ 241 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAH 241 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445544555555666665443 4444555678999999999999999996543
No 79
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=56.88 E-value=1.3e+02 Score=27.27 Aligned_cols=41 Identities=12% Similarity=0.053 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 156 RKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 156 RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
+++..+..|..++..+..++...++++..+...+...+..+
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443
No 80
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=56.67 E-value=20 Score=27.64 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022379 158 KMYVKDLEMKSRYLESECRKLGR 180 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ 180 (298)
|..+.+|+.++..|+.||.-|+.
T Consensus 20 K~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 20 KEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777777776654
No 81
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=56.12 E-value=1.2e+02 Score=25.45 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
...+.+-..|+.++..+..++..|..+|.-|-.||..
T Consensus 94 ~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 94 ASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4455566678888889999999999999999988864
No 82
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.01 E-value=27 Score=36.32 Aligned_cols=28 Identities=21% Similarity=0.239 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 172 ESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 172 E~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
+.+.+++.++.++|..+-+.|+.+|..+
T Consensus 108 ~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 108 QSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555556666655555555443
No 83
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=55.85 E-value=30 Score=31.88 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=24.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVL 186 (298)
Q Consensus 138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~ 186 (298)
.|.+|..+++ -+..+..+.+|+.++..|+.+..+++..+.+|-
T Consensus 91 ~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~ 133 (181)
T KOG3335|consen 91 WRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQLH 133 (181)
T ss_pred HHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555554 234445556666666666666666665555554
No 84
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=55.52 E-value=29 Score=32.84 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 022379 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAY 202 (298)
Q Consensus 155 ~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~ 202 (298)
+|.++|+..|+.+.. ....+++.|..||..|+++|..+...
T Consensus 101 ~kA~~~i~~l~~~~~-------~~~~~~e~l~~e~~~l~~rl~ql~~~ 141 (232)
T KOG2483|consen 101 DKALEHIQSLERKSA-------TQQQDIEDLSRENRKLKARLEQLSLP 141 (232)
T ss_pred hhHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 567777777777665 45556667788899999999876643
No 85
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.70 E-value=50 Score=26.57 Aligned_cols=39 Identities=21% Similarity=0.136 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
-++.||.+++..-..+.-|+-.+..|...|..|.+..+.
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~ 43 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 467788888877777777777777777777777776654
No 86
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=54.45 E-value=62 Score=33.74 Aligned_cols=28 Identities=14% Similarity=0.111 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 171 LESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 171 LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+..+...++++|+.+..||+.|+.|+..
T Consensus 95 ~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 95 LNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3356667889999999999999999843
No 87
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.38 E-value=39 Score=27.90 Aligned_cols=33 Identities=9% Similarity=-0.035 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 168 SRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 168 vk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
...++++...++++++.+..+|+.|+.++...+
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555666666666666777777777776654
No 88
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=54.35 E-value=51 Score=26.88 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
.++..|..-+..||+.|..|..+++.|...|++-|.+++...
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~ 74 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQEQL 74 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666677777777788888888888999999998887643
No 89
>PRK14127 cell division protein GpsB; Provisional
Probab=53.85 E-value=52 Score=27.83 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
+|++.+-..+..|..+|..|++++..|..+...++.++...
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 56777777777888888888888888888888888887654
No 90
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=53.17 E-value=68 Score=26.58 Aligned_cols=40 Identities=23% Similarity=0.170 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
=-..+..|+.+++.+..++.+|+..+.....+...|+.++
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344677777777777777777777777777777776654
No 91
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=53.04 E-value=14 Score=26.47 Aligned_cols=33 Identities=24% Similarity=0.257 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 164 LEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 164 LE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
|-.....+...++.|...+..|..||..||.+.
T Consensus 12 laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 12 LAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ------------------HHHHHHHHHHHHHHH
T ss_pred HHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 333444556666777777777888888888765
No 92
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=52.43 E-value=88 Score=26.32 Aligned_cols=44 Identities=14% Similarity=0.144 Sum_probs=31.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 142 RQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCV 185 (298)
Q Consensus 142 RllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L 185 (298)
.+..++.++..-|..=..-+.+++.++..|..+|.-|..||+.+
T Consensus 88 ~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 88 ELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455666666666666677788888888888888888877643
No 93
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=52.11 E-value=86 Score=27.46 Aligned_cols=26 Identities=31% Similarity=0.247 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 175 CRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 175 N~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
-.+|++++..+..|-+.+.+.+....
T Consensus 68 waKl~Rk~~kl~~el~~~~~~~~~~~ 93 (161)
T PF04420_consen 68 WAKLNRKLDKLEEELEKLNKSLSSEK 93 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999999988886643
No 94
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=51.54 E-value=69 Score=27.61 Aligned_cols=44 Identities=23% Similarity=0.225 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 155 ~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
..|..-+++|+.+...|+-+...|.++-..+..+-..|+..|+.
T Consensus 66 ~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 66 VSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677788888888777778877777777777778777765
No 95
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=51.54 E-value=27 Score=30.09 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVL 186 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~ 186 (298)
|-.-+++|..++..|+-||..|+++|..-.
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 345689999999999999999999876543
No 96
>PF15556 Zwint: ZW10 interactor
Probab=51.11 E-value=1.7e+02 Score=28.00 Aligned_cols=52 Identities=15% Similarity=0.081 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 145 RNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 145 RNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
|.+++..+.|--.|.|...-|..+..|..-..+.+++......|-..|.+.|
T Consensus 113 KKqva~eK~r~AQkqwqlqQeK~LQ~Lae~sAEvrerq~~~qqeLe~l~qeL 164 (252)
T PF15556_consen 113 KKQVAMEKLRAAQKQWQLQQEKHLQHLAEVSAEVRERQTGTQQELERLYQEL 164 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555444444444444333333444444433
No 97
>PHA03155 hypothetical protein; Provisional
Probab=50.31 E-value=48 Score=28.61 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 177 KLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 177 ~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
+|..+++.|..||..|+++|....
T Consensus 12 eLaaeL~kL~~ENK~LKkkl~~~~ 35 (115)
T PHA03155 12 ELEKELQKLKIENKALKKKLLQHG 35 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC
Confidence 566677777888999998886654
No 98
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=49.72 E-value=1.3e+02 Score=27.20 Aligned_cols=8 Identities=25% Similarity=0.422 Sum_probs=3.5
Q ss_pred hcCCCccc
Q 022379 234 FTLPKPIW 241 (298)
Q Consensus 234 l~~P~~~~ 241 (298)
|.+|-.|.
T Consensus 215 L~v~Lpy~ 222 (302)
T PF10186_consen 215 LGVPLPYP 222 (302)
T ss_pred hCCCCCCC
Confidence 44444443
No 99
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=49.37 E-value=67 Score=26.40 Aligned_cols=33 Identities=36% Similarity=0.375 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
||.|=...|.++..|+.+ +..+..||..|+.+|
T Consensus 40 KksYe~rwek~v~~L~~e-------~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENE-------NKALKRENEQLKKKL 72 (87)
T ss_pred HhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 444444444444444443 444445555555554
No 100
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.52 E-value=63 Score=24.60 Aligned_cols=31 Identities=23% Similarity=0.287 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 167 kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
++..|..+.+.|..++.+|..+-..||..++
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555553
No 101
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=48.45 E-value=87 Score=29.54 Aligned_cols=55 Identities=15% Similarity=0.050 Sum_probs=47.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 142 RQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 142 RllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
.+..-|.+|+.-.+|+++-+..|..-++..-+|-.+.+.+++.|..++..|.++.
T Consensus 16 ELE~~k~~A~EElRk~eeqi~~L~~Ll~~a~~ERDEAr~qlq~Ll~~~~~l~~~~ 70 (214)
T PF07795_consen 16 ELEATKMEANEELRKREEQIAHLKDLLKKAYQERDEAREQLQKLLLEKLSLQQQQ 70 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 4667899999999999999999999999988899999999999998886666443
No 102
>PHA03162 hypothetical protein; Provisional
Probab=48.43 E-value=27 Score=30.83 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 177 KLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 177 ~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
+|..+|+.|+.||..|+++|....
T Consensus 17 eLaaeL~kLqmENK~LKkkl~~~~ 40 (135)
T PHA03162 17 DLAAEIAKLQLENKALKKKIKEGT 40 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 566666777888888888886543
No 103
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=48.38 E-value=1.4e+02 Score=30.87 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 149 AAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 149 SAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+-.++....+.....||..++.++.++..+..++.....++..+++++..
T Consensus 49 ~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~ 98 (420)
T COG4942 49 ALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 33344444555667788888888888888888888777777777777654
No 104
>PRK11637 AmiB activator; Provisional
Probab=47.98 E-value=1.6e+02 Score=29.15 Aligned_cols=15 Identities=13% Similarity=-0.046 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLES 173 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~ 173 (298)
..+..|+.++..++.
T Consensus 75 ~~l~~l~~qi~~~~~ 89 (428)
T PRK11637 75 AQLKKQEEAISQASR 89 (428)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 105
>PHA03155 hypothetical protein; Provisional
Probab=47.79 E-value=25 Score=30.27 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHC 184 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~ 184 (298)
.-+++|+.++..|+-||..|++++.+
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34799999999999999999999854
No 106
>PLN02320 seryl-tRNA synthetase
Probab=47.71 E-value=54 Score=34.25 Aligned_cols=69 Identities=16% Similarity=0.007 Sum_probs=44.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccccc
Q 022379 142 RQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTKQE 210 (298)
Q Consensus 142 RllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g~~~~~qe 210 (298)
|..||..|.+-..++++.-.+.|-.+++.+..+...|..++..+..+-..+-..|.+.-.-.++.+.-+
T Consensus 113 r~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP~G~de 181 (502)
T PLN02320 113 RAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVGGED 181 (502)
T ss_pred HHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCCC
Confidence 455666666555434444456777777788888888888887777777777777777554444444333
No 107
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=47.01 E-value=30 Score=31.22 Aligned_cols=19 Identities=21% Similarity=0.207 Sum_probs=1.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022379 178 LGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 178 L~~ql~~L~~ENq~LRqqL 196 (298)
|+..++.|+.|-..||+.|
T Consensus 29 L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 29 LREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444
No 108
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=46.99 E-value=1.5e+02 Score=26.03 Aligned_cols=22 Identities=14% Similarity=0.143 Sum_probs=12.5
Q ss_pred CCCCChhHHHHHHHHHhHHHHH
Q 022379 130 DNADDPISKKRRRQLRNRDAAV 151 (298)
Q Consensus 130 ~~~Dd~e~KR~RRllRNReSAq 151 (298)
-+.++.+.-+.--.+-.|...+
T Consensus 58 yD~dD~EAD~Iy~~ID~rmd~R 79 (133)
T PF06424_consen 58 YDDDDEEADRIYESIDRRMDSR 79 (133)
T ss_pred CccchHHHHHHHHHHHHHHHhc
Confidence 4556666666655555554433
No 109
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=46.78 E-value=1.4e+02 Score=27.20 Aligned_cols=41 Identities=27% Similarity=0.245 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 156 RKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 156 RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
+.+..+..|..+++.|+.+|..|.+++..+..+=..|-..+
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555554444444444
No 110
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=46.71 E-value=1.1e+02 Score=24.69 Aligned_cols=37 Identities=19% Similarity=0.090 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 152 RSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAE 188 (298)
Q Consensus 152 rSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~E 188 (298)
.-=.|-+.|+..|..++..|+.-|.+|+.+...++..
T Consensus 19 eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 19 EEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3446778889999999999988888888777666665
No 111
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=46.69 E-value=1.8e+02 Score=24.61 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=20.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLH 183 (298)
Q Consensus 141 RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~ 183 (298)
.|-+..|+.......++..-+..|+..+..|+.++..+++.+.
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544444444444444444444433333
No 112
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=46.08 E-value=60 Score=25.54 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 168 SRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 168 vk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
.+.+..++.+++.+...+..||..|+.+.....
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445566677777777777888888877776543
No 113
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=45.72 E-value=1.8e+02 Score=27.44 Aligned_cols=41 Identities=10% Similarity=0.146 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
...++.|..+|..|..++.++..+++++......|-+.|..
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777777777776666644
No 114
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=45.41 E-value=71 Score=27.64 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 163 DLEMKSRYLESECRKLGRLLHCVLAENQ 190 (298)
Q Consensus 163 eLE~kvk~LE~EN~~L~~ql~~L~~ENq 190 (298)
.+|.+++.++.++.++...|..|..-|+
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~ 45 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQ 45 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 115
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=45.39 E-value=97 Score=25.48 Aligned_cols=38 Identities=26% Similarity=0.235 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRq 194 (298)
=...|.+|+.++..+..+|.+|+.++..-..|-+.|-.
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ 84 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTEREEKQELLK 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456888888888888888888888887777777654
No 116
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=45.29 E-value=83 Score=25.91 Aligned_cols=31 Identities=23% Similarity=0.180 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 168 SRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 168 vk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
...++.++.+|++++..|..||.-|+.-+.-
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~ 103 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEY 103 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457778888888899999999988877644
No 117
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=44.87 E-value=43 Score=25.76 Aligned_cols=42 Identities=24% Similarity=0.297 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 159 MYVKDLEMKSRYLESEC----RKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN----~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
..|..+|.-+..|++|- ..|...|..|+.+|..|.-+|.+..
T Consensus 3 ~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~kL~m~~ 48 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTFKLIMKQ 48 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeecC
Confidence 45778888888888874 4567788888999998888886544
No 118
>PHA03162 hypothetical protein; Provisional
Probab=44.13 E-value=19 Score=31.77 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 156 RKKMYVKDLEMKSRYLESECRKLGRLLH 183 (298)
Q Consensus 156 RKK~YV~eLE~kvk~LE~EN~~L~~ql~ 183 (298)
++..-|++|..++..|+-||..|++++.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999999999884
No 119
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=44.04 E-value=45 Score=28.82 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 167 KSRYLESECRKLGRLLHCVLAENQSLR 193 (298)
Q Consensus 167 kvk~LE~EN~~L~~ql~~L~~ENq~LR 193 (298)
+|..|..++.+|.+++..|..||.-||
T Consensus 68 EVe~Lk~qI~eL~er~~~Le~EN~lLk 94 (123)
T KOG4797|consen 68 EVEVLKEQIRELEERNSALERENSLLK 94 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555554
No 120
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=43.97 E-value=1.3e+02 Score=23.24 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+...+..|+.+...++.+...|..++..+..+-..++..|..
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888888888888888887777777754
No 121
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=43.97 E-value=2.3e+02 Score=26.46 Aligned_cols=42 Identities=26% Similarity=0.203 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
++-+++|-.-++.++.+++.|..+..++..||+.|-..+...
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~L 107 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETL 107 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666677788888888888888888888777776554
No 122
>smart00338 BRLZ basic region leucin zipper.
Probab=43.51 E-value=1.3e+02 Score=22.09 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022379 176 RKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 176 ~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
..|..++..|..+|..|+.++.
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~ 50 (65)
T smart00338 29 EELERKVEQLEAENERLKKEIE 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555554443
No 123
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=43.44 E-value=2e+02 Score=25.94 Aligned_cols=16 Identities=25% Similarity=0.472 Sum_probs=9.3
Q ss_pred HHHHhhhhhcCCCCCC
Q 022379 67 DDFFADVFVDQPSPAS 82 (298)
Q Consensus 67 ~~f~~d~l~d~p~~~~ 82 (298)
++++--|=+|||.-|-
T Consensus 69 ~ELIRQVTi~C~ERGl 84 (189)
T PF10211_consen 69 DELIRQVTIDCPERGL 84 (189)
T ss_pred HHHHHHHHhCcHHHhH
Confidence 3444445567777555
No 124
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=43.12 E-value=1.3e+02 Score=22.76 Aligned_cols=24 Identities=21% Similarity=0.146 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 175 CRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 175 N~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
...|..+...|+.+|..||..|+.
T Consensus 35 R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 35 RAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355677778899999999988864
No 125
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=43.05 E-value=98 Score=31.07 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=41.9
Q ss_pred HHHHhHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Q 022379 142 RQLRNRDAAVRSRERK-KMY-VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASL 206 (298)
Q Consensus 142 RllRNReSAqrSR~RK-K~Y-V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g~~~ 206 (298)
|..||..|.+--..++ ++. .+.|-.+++.+.++...|..++..+..+-..+...|.+.-.-.++.
T Consensus 50 ~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~ 116 (418)
T TIGR00414 50 QAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPV 116 (418)
T ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 4556666665544222 223 5677777788888888888888888777777777777754443333
No 126
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=43.04 E-value=86 Score=28.55 Aligned_cols=22 Identities=23% Similarity=0.157 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 022379 178 LGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 178 L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
+..++..|.-|+..|.+++.+.
T Consensus 98 ~ek~l~~Lk~e~evL~qr~~kl 119 (201)
T PF13851_consen 98 LEKELKDLKWEHEVLEQRFEKL 119 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666666554
No 127
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=43.00 E-value=2.2e+02 Score=25.91 Aligned_cols=52 Identities=23% Similarity=0.140 Sum_probs=25.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 022379 141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYL-------ESECRKLGRLLHCVLAENQSL 192 (298)
Q Consensus 141 RRllRNReSAqrSR~RKK~YV~eLE~kvk~L-------E~EN~~L~~ql~~L~~ENq~L 192 (298)
+..+....+-+..+.+.+.+.+.||.++..- +.+..+|..++..|+.+.+.+
T Consensus 92 ~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~ 150 (190)
T PF05266_consen 92 RSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKL 150 (190)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555556666666666655533 444444444444444443333
No 128
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=42.89 E-value=1.7e+02 Score=25.81 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 166 MKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 166 ~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
.+.+.++.|..+|++++.....+...|+.|....
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777778887777543
No 129
>PF05300 DUF737: Protein of unknown function (DUF737); InterPro: IPR007964 This family consists of several uncharacterised mammalian proteins of unknown function.
Probab=42.41 E-value=1e+02 Score=28.28 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 146 NRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (298)
Q Consensus 146 NReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~L 192 (298)
-|.++..-|.|-+.|...||.+=+.|.....=.++||..|..-|..+
T Consensus 121 er~~~~~E~~ka~~la~qLe~ke~el~~~d~fykeql~~le~k~~e~ 167 (187)
T PF05300_consen 121 ERASTEQERQKAKQLARQLEEKEAELKKQDAFYKEQLARLEEKNAEF 167 (187)
T ss_pred hhhcchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455667777888888888888888777888888888888665
No 130
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=41.85 E-value=65 Score=30.32 Aligned_cols=36 Identities=8% Similarity=-0.041 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
+.+|..++..|+.|+.+|+-+++.+..+...++++-
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq 91 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQ 91 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 467778888888888888888877777776665544
No 131
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=41.72 E-value=1.5e+02 Score=27.09 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 151 VRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAE 188 (298)
Q Consensus 151 qrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~E 188 (298)
+.-=++|++|+..-..+...++.+..+|+.++...+.|
T Consensus 138 ~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 138 KEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33334566777777777777777777776666655443
No 132
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=41.71 E-value=73 Score=28.83 Aligned_cols=38 Identities=24% Similarity=0.151 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 163 eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
+=..++..|.+.|.-|+.+++.....|..|...|.+.+
T Consensus 71 EEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt 108 (182)
T PF15035_consen 71 EEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLT 108 (182)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345667777788888888888888888877776643
No 133
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=41.16 E-value=96 Score=32.40 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=39.5
Q ss_pred CCCCCCCChhHHHH-HHHHHhHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 127 TDNDNADDPISKKR-RRQLRNRDAAVRSRERKKMYV----------KDLEMKSRYLESECRKLGRLLHCVLA 187 (298)
Q Consensus 127 ~~~~~~Dd~e~KR~-RRllRNReSAqrSR~RKK~YV----------~eLE~kvk~LE~EN~~L~~ql~~L~~ 187 (298)
|.-+...=+..+|+ |-|+.--+|-++...-=+..= ++|-.+|..|+.+|..|..|++.|++
T Consensus 243 TKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 243 TKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQT 314 (472)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 33333434444444 556666677776666544322 67888999999999999888876654
No 134
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=41.15 E-value=2.3e+02 Score=25.43 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=35.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVL 186 (298)
Q Consensus 138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~ 186 (298)
+..+++++.|..|.-.=++|-.-..+|-.+++.-+..+.++...|..+.
T Consensus 84 ~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~ela 132 (152)
T PF11500_consen 84 KEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELA 132 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788888888888888888888888887766666666655555443
No 135
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=41.11 E-value=90 Score=31.17 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRq 194 (298)
..+..|+.+...++.++.++++++..+..|...|+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 29 KELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345566666666666666666666666666666643
No 136
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=40.87 E-value=86 Score=27.03 Aligned_cols=41 Identities=20% Similarity=0.045 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.+.+..|=+++..|.+....|-+....|+-||..||.+|..
T Consensus 14 e~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 14 EEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 34566777788888888888888889999999999999976
No 137
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=40.75 E-value=1.3e+02 Score=23.24 Aligned_cols=13 Identities=38% Similarity=0.429 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q 022379 184 CVLAENQSLRFSL 196 (298)
Q Consensus 184 ~L~~ENq~LRqqL 196 (298)
.|..||..|+.+|
T Consensus 51 ~Lk~E~e~L~~el 63 (69)
T PF14197_consen 51 KLKEENEALRKEL 63 (69)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 138
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=40.44 E-value=2e+02 Score=23.23 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=42.5
Q ss_pred ChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 134 DPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (298)
Q Consensus 134 d~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~L 192 (298)
+...++..+.+.+=+++-..|--+..-..+||.+++.|...-.+|-+++.+.......|
T Consensus 7 e~al~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~L 65 (89)
T PF13747_consen 7 EAALTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRL 65 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHH
Confidence 34557777888888888877777777778899998888888777766666554444433
No 139
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=40.36 E-value=1.5e+02 Score=30.13 Aligned_cols=15 Identities=13% Similarity=-0.002 Sum_probs=8.0
Q ss_pred HHHhhhcCCCccccc
Q 022379 229 GIMCLFTLPKPIWSH 243 (298)
Q Consensus 229 ~i~cLl~~P~~~~~~ 243 (298)
..+|-|..|-+-++.
T Consensus 359 St~~~~~~Pl~~tR~ 373 (395)
T PF10267_consen 359 STVANCPLPLTRTRL 373 (395)
T ss_pred HHHhcCCcHHhhccH
Confidence 445556666555553
No 140
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=40.27 E-value=17 Score=29.49 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LR 193 (298)
.|+..|...+..|..+|..|+.++..|..+...++
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~ 59 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELR 59 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 57777777777777777777666665544444443
No 141
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=40.01 E-value=89 Score=30.86 Aligned_cols=34 Identities=26% Similarity=0.196 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 165 EMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 165 E~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
...+..|..+...|+.+++.+..||..|.+.|..
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ 266 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQA 266 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3344455566677788888888888888888865
No 142
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=39.96 E-value=70 Score=33.36 Aligned_cols=30 Identities=17% Similarity=0.055 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 169 RYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.+++.+..+|+.+.++++..-+.|..+|..
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666677777777777777777777743
No 143
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=39.76 E-value=52 Score=30.01 Aligned_cols=30 Identities=30% Similarity=0.318 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 167 KSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 167 kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
++..|..++..|+..++.+..||+.|++.-
T Consensus 13 ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq 42 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELRKENKTLKQLQ 42 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777777777777776544
No 144
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=39.50 E-value=3e+02 Score=25.33 Aligned_cols=36 Identities=19% Similarity=0.221 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
..+..+...|..+...|..+++.|...|..|..++.
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555555555555554443
No 145
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=39.46 E-value=96 Score=22.25 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 175 CRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 175 N~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
...|...+..|..+|..|++++..
T Consensus 27 ~~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 27 EEELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777654
No 146
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=39.35 E-value=1.4e+02 Score=22.69 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 156 RKKMYVKDLEMKSRYLESECRKLGRLLHCVLA 187 (298)
Q Consensus 156 RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ 187 (298)
.....+..++.+...++.+|.+|+.++..|..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566788888888888899999888887765
No 147
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=38.86 E-value=1.9e+02 Score=31.03 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=19.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 144 LRNRDAAVRSRERKKMYVKDLEMKSRYLESE 174 (298)
Q Consensus 144 lRNReSAqrSR~RKK~YV~eLE~kvk~LE~E 174 (298)
.+|.+.-.+--..++..+.+||.++..+..+
T Consensus 107 v~~ne~Ls~L~~EqEerL~ELE~~le~~~e~ 137 (617)
T PF15070_consen 107 VENNEQLSRLNQEQEERLAELEEELERLQEQ 137 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333347788888888888766554
No 148
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=38.71 E-value=58 Score=28.36 Aligned_cols=37 Identities=32% Similarity=0.308 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqq 195 (298)
.-++.||.+++.-..|+..|++++..+...|..|..+
T Consensus 94 ~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 94 IVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4466788888888888888889998888888887644
No 149
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=38.46 E-value=92 Score=34.33 Aligned_cols=28 Identities=21% Similarity=0.481 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 146 NRDAAVRSRERKKMYVKDLEMKSRYLES 173 (298)
Q Consensus 146 NReSAqrSR~RKK~YV~eLE~kvk~LE~ 173 (298)
.=+=|..+...||+|+++|+-|++-|..
T Consensus 418 ksq~~kl~k~q~k~y~de~dyr~kl~~k 445 (763)
T TIGR00993 418 KAQMAKLSKEQRKAYLEEYDYRVKLLQK 445 (763)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455778889999999999999987654
No 150
>KOG3540 consensus Beta amyloid precursor protein [General function prediction only]
Probab=38.34 E-value=2.9e+02 Score=29.54 Aligned_cols=23 Identities=13% Similarity=0.122 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022379 175 CRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 175 N~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
|+..++.++.|..|-..-||||.
T Consensus 291 nqhFQ~~v~sLEee~a~erqqlv 313 (615)
T KOG3540|consen 291 NQHFQKTVSSLEEEAARERQQLV 313 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666654
No 151
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=38.23 E-value=72 Score=27.63 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 152 RSRERKKMYVKDLEMKSRYLESECRKLGR 180 (298)
Q Consensus 152 rSR~RKK~YV~eLE~kvk~LE~EN~~L~~ 180 (298)
+-=+-=|+.+.+||.++..|++||.-|+.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445567788888888888888887754
No 152
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.10 E-value=2.2e+02 Score=27.08 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=45.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 140 RRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 140 ~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
.|-.++-|+.+|.--++|.+|+..+-..-..+..+...+..++++. |..+|..+.+-
T Consensus 151 lK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a---~~~~k~e~~Rf 207 (243)
T cd07666 151 LMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA---NNALKADWERW 207 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 3456788999999999999999887765567888888888888887 66677776553
No 153
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=38.03 E-value=1.3e+02 Score=30.22 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccc
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTK 208 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g~~~~~ 208 (298)
.+.|-.+.+.+.++...|..++..+..+-..+...|.+.-.-.++.+.
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN~~~~~vP~g~ 115 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELEELLLRIPNLPHDSVPVGK 115 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCC
Confidence 445666667777777777777777777766666666665444444433
No 154
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.97 E-value=1.5e+02 Score=23.69 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
+++.+||.++..-+.-+..|...+......-..++.+|
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~ql 45 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQL 45 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888777776666665555444444444444
No 155
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=37.76 E-value=1.3e+02 Score=30.00 Aligned_cols=42 Identities=12% Similarity=0.117 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAY 202 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~ 202 (298)
...|+.++..|+.++..+..+...+..|...|+.++.+.+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (398)
T PTZ00454 24 LKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSV 65 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 455788889999999999999999999999999999885443
No 156
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=37.62 E-value=1.2e+02 Score=25.99 Aligned_cols=9 Identities=33% Similarity=0.497 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 022379 137 SKKRRRQLR 145 (298)
Q Consensus 137 ~KR~RRllR 145 (298)
-.+....+|
T Consensus 18 ve~L~s~lr 26 (120)
T PF12325_consen 18 VERLQSQLR 26 (120)
T ss_pred HHHHHHHHH
Confidence 333333333
No 157
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=37.23 E-value=1e+02 Score=23.62 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHC 184 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~ 184 (298)
|.+|+.++..|+.|+.+++..+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777776666555543
No 158
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=37.18 E-value=1.8e+02 Score=23.10 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLH 183 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~ 183 (298)
..+..|..+...+..+|..|+.++.
T Consensus 75 ~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 75 EQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567888888889999998887764
No 159
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=37.13 E-value=2.5e+02 Score=29.91 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=22.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLG 179 (298)
Q Consensus 138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~ 179 (298)
|.+..+++...........-+..+..|+..+...+.++.+|.
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555566666655556666666665554444444443
No 160
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=37.03 E-value=51 Score=35.10 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
|..+.+|+..+..|..|+++|.+-++.|..+|..|+..+...+
T Consensus 422 ~~e~s~l~~~~vt~~~q~~el~~~v~~l~~~n~~l~s~~~~~r 464 (669)
T KOG0818|consen 422 KSELSDLRKQAVTLTKQVQELTEVVHALQASNAKLQSLMKVNR 464 (669)
T ss_pred hhhhhhHhhcchhhHHHHHHHHHHHHHHHhhhHHHHHHHhhcc
Confidence 6678999999999999999999999999999999999886544
No 161
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=36.95 E-value=80 Score=36.07 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q 022379 156 RKKMYVKDLEMKSRYLESECRKLGRLLHCVLA--ENQSLRFS 195 (298)
Q Consensus 156 RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~--ENq~LRqq 195 (298)
.++...+.||..+-.|+.+|..|..+|+.|.. +|..+..+
T Consensus 527 ~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq 568 (1195)
T KOG4643|consen 527 LLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQ 568 (1195)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34556677778888888888888888888877 77665443
No 162
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=36.79 E-value=1.6e+02 Score=25.19 Aligned_cols=59 Identities=12% Similarity=0.045 Sum_probs=42.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 139 KRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 139 R~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
+..-+.+-.+....|+..=...-+.|+..+..|.+++....+.+..|+++-..++..|-
T Consensus 17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777776665566668888888888887777777777777777776664
No 163
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=36.76 E-value=1.9e+02 Score=30.79 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
+.+||.++..+...+..|...+..|..||..|+.+|....
T Consensus 150 l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 150 LSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4567777777777777777888888888888888886643
No 164
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=36.73 E-value=1.4e+02 Score=21.46 Aligned_cols=34 Identities=29% Similarity=0.227 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 164 LEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 164 LE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
|-.....|..++..|....+.|.+|-+.|+..++
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334445555555555555555555555555553
No 165
>smart00340 HALZ homeobox associated leucin zipper.
Probab=36.21 E-value=67 Score=23.50 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 022379 174 ECRKLGRLLHCVLAENQSLRFSLQKGNAY 202 (298)
Q Consensus 174 EN~~L~~ql~~L~~ENq~LRqqL~~~~a~ 202 (298)
.+.-|++=...|..||.+|+..++.+++.
T Consensus 6 dCe~LKrcce~LteeNrRL~ke~~eLral 34 (44)
T smart00340 6 DCELLKRCCESLTEENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445555556666677776666665543
No 166
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=36.08 E-value=2.4e+02 Score=23.66 Aligned_cols=48 Identities=23% Similarity=0.196 Sum_probs=24.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 143 QLRNRDAAVRSRERKKMYVKDLEM--KSRYLESECRKLGRLLHCVLAENQ 190 (298)
Q Consensus 143 llRNReSAqrSR~RKK~YV~eLE~--kvk~LE~EN~~L~~ql~~L~~ENq 190 (298)
+-.||++++.-++-...|--.|.. ++..+..+...+..++.....+.+
T Consensus 55 msQNRq~~~dr~ra~~D~~inl~ae~ei~~l~~~l~~l~~~~~~~~~~~~ 104 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINLKAEQEIERLHRKLDALREKLGELLERDQ 104 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 447898888655555555544433 233444444444444444444333
No 167
>PLN02678 seryl-tRNA synthetase
Probab=35.93 E-value=1.3e+02 Score=30.93 Aligned_cols=65 Identities=11% Similarity=-0.019 Sum_probs=39.7
Q ss_pred HHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcc
Q 022379 142 RQLRNRDAAVRSR-ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASL 206 (298)
Q Consensus 142 RllRNReSAqrSR-~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g~~~ 206 (298)
|..||..|.+-.. ++.++-.++|-.+++.|.++...|..++..+..+-..+...|.+.-.-.++.
T Consensus 53 r~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi~~~~VP~ 118 (448)
T PLN02678 53 RKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNLVHDSVPV 118 (448)
T ss_pred HHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 3445555554432 2333445566667777777777777777777777777777777654433333
No 168
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=35.39 E-value=1e+02 Score=29.85 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+..++.+++.|+.+...|.+++..|..|+..|.+++..
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~ 82 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEE 82 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 169
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=35.24 E-value=2.1e+02 Score=23.45 Aligned_cols=40 Identities=25% Similarity=0.198 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 158 KMYVKDLEMKSRYL--ESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 158 K~YV~eLE~kvk~L--E~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
..++..+|.+++.| ..+...|+-.+..+.-+-..|..+++
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~ 89 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQ 89 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 33444555555544 44444444444444444444444443
No 170
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=35.12 E-value=1.7e+02 Score=25.06 Aligned_cols=38 Identities=16% Similarity=0.032 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
-+|..-+..|.+.....++..-.|..|||.|-|.+.++
T Consensus 66 LELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 66 LELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 33444444444444444444445578899998888663
No 171
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=34.93 E-value=57 Score=33.42 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
..+++.+-+.|+..|++|..+++.|+.++..+..++
T Consensus 292 ~~E~~~rqk~le~~n~~L~~rieeLk~~~~~~~~~~ 327 (411)
T KOG1318|consen 292 ARELENRQKKLESTNQELALRIEELKSEAGRHGLQV 327 (411)
T ss_pred HHHHHhhhhHHHhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 344444445555555566656555555555555444
No 172
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=34.55 E-value=2e+02 Score=23.15 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+..=+..|+.++..++.+...+..++..+..+-..|+..|..
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777777777777777777777777777777654
No 173
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=34.50 E-value=2e+02 Score=21.55 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=33.7
Q ss_pred HHHHHHHHhHHHHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 138 KKRRRQLRNRDAAVRSRE---RKKMY-VKDLEMKSRYLESECRKLGRLLHCVLAEN 189 (298)
Q Consensus 138 KR~RRllRNReSAqrSR~---RKK~Y-V~eLE~kvk~LE~EN~~L~~ql~~L~~EN 189 (298)
++..+-.+-|+.|...++ ..+.- ....+.++......+..|+.++..+..++
T Consensus 8 ~~i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~ 63 (70)
T PF02185_consen 8 KKIDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQRS 63 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455666677888888776 33333 56677777777777777766666655443
No 174
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=34.39 E-value=2.8e+02 Score=25.99 Aligned_cols=37 Identities=11% Similarity=0.006 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 163 eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
-+-++|..|.+...+|..+.+.|..||..||.....+
T Consensus 105 vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~L 141 (195)
T PF10226_consen 105 VMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYL 141 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455678888888888888899999999999887664
No 175
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=33.87 E-value=3.5e+02 Score=25.34 Aligned_cols=23 Identities=35% Similarity=0.379 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHhhhcCCCcccc
Q 022379 220 LLGSLLWFLGIMCLFTLPKPIWS 242 (298)
Q Consensus 220 ~L~sllw~L~i~cLl~~P~~~~~ 242 (298)
.+..++|++..+|+=.+|.+..+
T Consensus 262 ~~~~~~i~llfi~iel~Pv~~Kl 284 (301)
T PF14362_consen 262 LLASLFIFLLFIAIELLPVLFKL 284 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666777777766554
No 176
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.81 E-value=2.1e+02 Score=29.90 Aligned_cols=60 Identities=18% Similarity=0.173 Sum_probs=35.5
Q ss_pred CChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 133 DDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 133 Dd~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+++.-||.-|.+ .|.|+-.-+-+--..||.+ .++..+.+++........-|.+++++|++
T Consensus 52 ~~katkr~i~~e----~alR~qa~dt~~~~rle~q--~~T~~ctree~t~k~~~~lt~e~~~~lqq 111 (463)
T KOG1645|consen 52 SGKATKRQIRPE----YALRVQAMDTENEQRLEEQ--RRTHTCTREEKTNKEHVELTAELRAQLQQ 111 (463)
T ss_pred CChhHHHHHHHH----HHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHhhhh
Confidence 345556665543 3333333333333444444 44555666777777777778888888877
No 177
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=33.74 E-value=2e+02 Score=28.50 Aligned_cols=59 Identities=10% Similarity=0.172 Sum_probs=46.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 141 RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
.+++--.+.-.++|+|=-.-+.-=|..|..|+.++...+++++.|..|...++..|.+.
T Consensus 70 q~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 70 QSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred hhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45656666666666666666666677888899999999999999999999999999774
No 178
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=33.57 E-value=2.1e+02 Score=21.94 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022379 163 DLEMKSRYLESECRKLGRLL 182 (298)
Q Consensus 163 eLE~kvk~LE~EN~~L~~ql 182 (298)
.|+..+..-++-...|.++.
T Consensus 8 ~L~R~~~~~~~~Y~~Ll~r~ 27 (82)
T PF13807_consen 8 RLQRDVEIKRELYETLLQRY 27 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666655555555554443
No 179
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=33.39 E-value=2.5e+02 Score=27.33 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=40.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLES---ECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 141 RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~---EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
-.-+||||..-..++++|.-+.+--.+++..+- ....|+.++..+..||...-.+|...
T Consensus 130 LK~IR~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~ 191 (271)
T PF13805_consen 130 LKSIRNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNI 191 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 467899998877766666666554455554322 24667888888888888888888653
No 180
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=33.02 E-value=88 Score=24.92 Aligned_cols=19 Identities=21% Similarity=0.373 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022379 163 DLEMKSRYLESECRKLGRL 181 (298)
Q Consensus 163 eLE~kvk~LE~EN~~L~~q 181 (298)
.|-.+++.+..+...+..+
T Consensus 71 ~l~~e~~~lk~~i~~le~~ 89 (108)
T PF02403_consen 71 ELKAEVKELKEEIKELEEQ 89 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 181
>PRK12704 phosphodiesterase; Provisional
Probab=32.64 E-value=3.6e+02 Score=28.14 Aligned_cols=15 Identities=7% Similarity=0.034 Sum_probs=7.3
Q ss_pred Ccccccccccchhhh
Q 022379 238 KPIWSHLESVPLVQV 252 (298)
Q Consensus 238 ~~~~~~~~~~p~~~~ 252 (298)
+-.+.+.+.+|.+-+
T Consensus 207 ~e~~~~~v~lp~d~m 221 (520)
T PRK12704 207 AETTVSVVNLPNDEM 221 (520)
T ss_pred hhhceeeeecCCchh
Confidence 334445555565433
No 182
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=32.52 E-value=1.3e+02 Score=23.33 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022379 179 GRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 179 ~~ql~~L~~ENq~LRqqL~ 197 (298)
..++.....+|..|+..+.
T Consensus 39 ~~~l~~a~~e~~~Lk~E~e 57 (69)
T PF14197_consen 39 ERQLGDAYEENNKLKEENE 57 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555543
No 183
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=32.41 E-value=1.7e+02 Score=25.30 Aligned_cols=36 Identities=28% Similarity=0.221 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
+..||.+...++.++..|+.++..|..+--.+..+|
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443
No 184
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=32.31 E-value=2.5e+02 Score=24.37 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 156 RKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQ 190 (298)
Q Consensus 156 RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq 190 (298)
.|..-...|+..+..++.++++|..+...+..|+.
T Consensus 17 ~K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~ 51 (131)
T PF11068_consen 17 WKEELLQELQEQIQQLDQELQQLEFQGKRMIKEIK 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566677788888888888888777777666653
No 185
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=32.28 E-value=93 Score=26.56 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLG 179 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~ 179 (298)
+.++.||.++..|+.++.+++
T Consensus 112 ~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 112 ERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455666666666665555543
No 186
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=32.28 E-value=3.1e+02 Score=27.24 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022379 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (298)
Q Consensus 163 eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a 201 (298)
+...+.+.|..++..|++++..++-+|..||.++.....
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~ 114 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRV 114 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhh
Confidence 334455567777777788888888899999998877543
No 187
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=32.18 E-value=3.3e+02 Score=26.56 Aligned_cols=28 Identities=32% Similarity=0.348 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 171 LESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 171 LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
++.+...++.++..|..||..|...+.+
T Consensus 161 le~e~ee~~erlk~le~E~s~LeE~~~~ 188 (290)
T COG4026 161 LEAEYEEVQERLKRLEVENSRLEEMLKK 188 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555666666666666555544
No 188
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=32.13 E-value=2.4e+02 Score=27.37 Aligned_cols=65 Identities=17% Similarity=0.146 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 134 DPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 134 d~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.|..++......+-..|+..=+.++..+..++.++..|+.+......+...|..+-.....+|..
T Consensus 217 ~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 217 EPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp CHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 45445555555555666666667777888888888888888777777777777776666666654
No 189
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=32.09 E-value=2.2e+02 Score=28.16 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 145 RNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHC 184 (298)
Q Consensus 145 RNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~ 184 (298)
|-|+-.+.-++-=---++.||.+...|..+..+|.+.|+-
T Consensus 241 RYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~y 280 (294)
T KOG4571|consen 241 RYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRY 280 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333333334445555555555555555544443
No 190
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=31.98 E-value=1e+02 Score=24.76 Aligned_cols=32 Identities=19% Similarity=0.101 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 168 SRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 168 vk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
+..+.++|.+|++.++.|.+|-+.++...+-.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~~qIk 33 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKREFQIK 33 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 34677888899999888888888887775443
No 191
>PRK09039 hypothetical protein; Validated
Probab=31.96 E-value=3.4e+02 Score=26.67 Aligned_cols=26 Identities=12% Similarity=0.014 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 173 SECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 173 ~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.+..+...++..|..|-..||.||..
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~ 155 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAA 155 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555555555443
No 192
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=31.89 E-value=70 Score=29.60 Aligned_cols=40 Identities=23% Similarity=0.123 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
.+.||..+..|..+...|......|+.|++.|+.++....
T Consensus 107 ~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~ 146 (198)
T KOG0483|consen 107 TKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLK 146 (198)
T ss_pred chhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhh
Confidence 4678999999999999999999999999999999987643
No 193
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=31.74 E-value=1.2e+02 Score=28.21 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~L 192 (298)
-|.+|+.-.+.|..+|..|+..+......|+.|
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L 41 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQL 41 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888877776544444444
No 194
>PF14282 FlxA: FlxA-like protein
Probab=31.60 E-value=1.9e+02 Score=23.71 Aligned_cols=19 Identities=16% Similarity=0.256 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESEC 175 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN 175 (298)
|+..+..|...+..|+.++
T Consensus 49 k~~q~q~Lq~QI~~LqaQI 67 (106)
T PF14282_consen 49 KQQQIQLLQAQIQQLQAQI 67 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 195
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=31.41 E-value=2.4e+02 Score=22.99 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
.-+.+|+.++..++.....|..+...+...-..++.+|+
T Consensus 67 e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 67 EAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555555554
No 196
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.89 E-value=1.5e+02 Score=25.59 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 149 AAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (298)
Q Consensus 149 SAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~L 192 (298)
+--....-=+..++.||.+++.|+.+-..++++++.|..+-+.+
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444556678999999999999999999999998775544
No 197
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=30.51 E-value=2e+02 Score=22.35 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
.-+..|-.++..++.++..|..++..+..+-..|+..+.
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566666667777777777777777777777777664
No 198
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=30.50 E-value=4.3e+02 Score=26.54 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=17.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 022379 137 SKKRRRQLRNRDAAVRSRERKKM 159 (298)
Q Consensus 137 ~KR~RRllRNReSAqrSR~RKK~ 159 (298)
.++.|+++++|......=+||-.
T Consensus 121 ~~e~r~~lk~RI~rSEAFKRKll 143 (323)
T PF08537_consen 121 GREERRLLKDRILRSEAFKRKLL 143 (323)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 35557899999999988888743
No 199
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=30.35 E-value=1.7e+02 Score=23.55 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
+.|..++..|+.....|..++.....||..|++.=
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN 53 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESEN 53 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666666666666665543
No 200
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=30.33 E-value=79 Score=26.87 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 167 KSRYLESECRKLGRLLHCVLAENQ 190 (298)
Q Consensus 167 kvk~LE~EN~~L~~ql~~L~~ENq 190 (298)
+.+.|++||+-|+.+++-|.....
T Consensus 80 k~~~LeEENNlLklKievLLDMLt 103 (108)
T cd07429 80 KNQQLEEENNLLKLKIEVLLDMLA 103 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788888888888776655443
No 201
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.20 E-value=3.6e+02 Score=23.31 Aligned_cols=33 Identities=18% Similarity=0.136 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 147 RDAAVRSRERKKMYVKDLEMKSRYLESECRKLG 179 (298)
Q Consensus 147 ReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~ 179 (298)
....+.-++..+..+..++..++.+..+...+.
T Consensus 118 ~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 118 LQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334445555556666666666655555555
No 202
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=29.90 E-value=3.6e+02 Score=26.72 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=21.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKL 178 (298)
Q Consensus 141 RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L 178 (298)
.+.+.-|+--.....--.+|-.+||.++.+++..|..|
T Consensus 27 q~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl 64 (333)
T KOG1853|consen 27 QHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDL 64 (333)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666666665555544444
No 203
>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.
Probab=29.86 E-value=2.7e+02 Score=24.69 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022379 154 RERKKMYVKDLEMKSRYL 171 (298)
Q Consensus 154 R~RKK~YV~eLE~kvk~L 171 (298)
=++|++|+++|..+...|
T Consensus 17 I~~K~~~LqEL~~Q~va~ 34 (142)
T PF08781_consen 17 IKKKKEQLQELILQQVAF 34 (142)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367889998888765543
No 204
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=29.84 E-value=2.2e+02 Score=27.81 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022379 151 VRSRERKKMYVKDLEMKS-RYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (298)
Q Consensus 151 qrSR~RKK~YV~eLE~kv-k~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a 201 (298)
-+-.+||++--..|..+. ..+-.+..+|+++.+.|..|-..|++.+.+..-
T Consensus 198 LRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r~~l 249 (289)
T COG4985 198 LRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAELERQFL 249 (289)
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhceE
Confidence 334445555445555553 346677888999999999999999998876543
No 205
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=29.68 E-value=18 Score=34.55 Aligned_cols=32 Identities=31% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~L 192 (298)
+.+|...|..|-.+|.+|++.+++|.+||.+|
T Consensus 131 I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 131 IADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566667777777777777777777777
No 206
>KOG1055 consensus GABA-B ion channel receptor subunit GABABR1 and related subunits, G-protein coupled receptor superfamily [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=29.65 E-value=18 Score=39.80 Aligned_cols=63 Identities=24% Similarity=0.218 Sum_probs=51.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 138 KKRRRQLRNRDAAVRSRERKKMY----VKDLEM-KSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 138 KR~RRllRNReSAqrSR~RKK~Y----V~eLE~-kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
.|.+..++|=+.+..+|..++-- +.+.++ +.+.+..||.+|++++....+.-++|+++|+-..
T Consensus 726 pKv~~l~t~p~~~se~q~n~~~~~ss~~~k~~eer~~~lk~EN~~l~~~i~ekee~i~e~~~~l~~~~ 793 (865)
T KOG1055|consen 726 PKLRHLITNPQWASEAQRNMKTGPSSSVNENEEERLRLLKKENRRLRKKIMEKEERLSELKHQLQPRP 793 (865)
T ss_pred hhheeeecCchhhhhhhhccccCcccccchhHHHHhhhhhcccHHHHHhcccchHHHHHHHHhccccc
Confidence 46677888888888887776655 666665 7888999999999999999999999999997654
No 207
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=29.60 E-value=1.4e+02 Score=29.81 Aligned_cols=39 Identities=15% Similarity=-0.003 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHC---VLAENQSLRFSLQ 197 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~---L~~ENq~LRqqL~ 197 (298)
.+...|.++.+.|.+||.+|+.++.. +..||..|+..+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKSYEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44577777888888888887555443 5688888776654
No 208
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=29.23 E-value=3.1e+02 Score=26.32 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 022379 178 LGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 178 L~~ql~~L~~ENq~LRqqL~~ 198 (298)
..+.++.|..-|+.|+.||..
T Consensus 233 ~~eei~fLk~tN~qLKaQLeg 253 (259)
T KOG4001|consen 233 MKEEIEFLKETNRQLKAQLEG 253 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 344566677888888888864
No 209
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.22 E-value=1.2e+02 Score=26.27 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLL--HCVLAENQSLRFSLQK 198 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql--~~L~~ENq~LRqqL~~ 198 (298)
++.+..|+..++.|+.+...|...+ ..|..+...|++++..
T Consensus 85 ~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~ 127 (169)
T PF07106_consen 85 REELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEE 127 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443 3455555555555543
No 210
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=29.19 E-value=2.2e+02 Score=22.77 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 170 YLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
.++.+...|...+..+..+-..|+..+
T Consensus 98 ~l~~~~~~l~~~~~~~~~~~~~l~~~l 124 (129)
T cd00890 98 TLEKQIEKLEKQLEKLQDQITELQEEL 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 211
>PF14645 Chibby: Chibby family
Probab=29.11 E-value=86 Score=26.53 Aligned_cols=15 Identities=27% Similarity=0.222 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 022379 168 SRYLESECRKLGRLL 182 (298)
Q Consensus 168 vk~LE~EN~~L~~ql 182 (298)
.+.|++||+-|+-++
T Consensus 80 n~~L~EENN~Lklk~ 94 (116)
T PF14645_consen 80 NQQLEEENNLLKLKI 94 (116)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444333
No 212
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=29.02 E-value=1.9e+02 Score=21.62 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVL 186 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~ 186 (298)
.....++..|+.+|..|+.++..++
T Consensus 25 ~~a~~rl~~l~~EN~~Lr~eL~~~r 49 (52)
T PF12808_consen 25 SAARKRLSKLEGENRLLRAELERLR 49 (52)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455677777778888877776554
No 213
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=28.98 E-value=1.2e+02 Score=29.02 Aligned_cols=36 Identities=28% Similarity=0.293 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 164 LEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 164 LE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
|+.+++.|+.+...++.+...+..|...++.++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (364)
T TIGR01242 4 LDVRIRKLEDEKRSLEKEKIRLERELERLRSEIERL 39 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555566555543
No 214
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=28.89 E-value=4.5e+02 Score=24.02 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
..||.+-..+-..|-++...+..|..|...||++...
T Consensus 178 ~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 178 RYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666666666666666666665544
No 215
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=28.89 E-value=3.1e+02 Score=22.13 Aligned_cols=21 Identities=29% Similarity=0.213 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022379 176 RKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 176 ~~L~~ql~~L~~ENq~LRqqL 196 (298)
..|..++..|..+...|...+
T Consensus 84 ~~l~~~l~~l~~~~~k~e~~l 104 (126)
T PF13863_consen 84 KKLKAELEELKSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444443333
No 216
>PRK14154 heat shock protein GrpE; Provisional
Probab=28.89 E-value=1.6e+02 Score=27.49 Aligned_cols=11 Identities=9% Similarity=0.045 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 022379 164 LEMKSRYLESE 174 (298)
Q Consensus 164 LE~kvk~LE~E 174 (298)
|..++..+.++
T Consensus 71 lkd~~lRl~AD 81 (208)
T PRK14154 71 YKTQYLRAQAE 81 (208)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 217
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=28.77 E-value=4.5e+02 Score=23.95 Aligned_cols=23 Identities=26% Similarity=0.175 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022379 164 LEMKSRYLESECRKLGRLLHCVL 186 (298)
Q Consensus 164 LE~kvk~LE~EN~~L~~ql~~L~ 186 (298)
+|.++..|+....+|+++.+.+.
T Consensus 129 ~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 129 LESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555443333
No 218
>PRK11239 hypothetical protein; Provisional
Probab=28.53 E-value=97 Score=29.30 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLA 187 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ 187 (298)
..||.++..|+++...|+.+++.|..
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55888888888888888888777654
No 219
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.31 E-value=4.3e+02 Score=25.74 Aligned_cols=58 Identities=9% Similarity=0.073 Sum_probs=30.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 022379 143 QLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYG 203 (298)
Q Consensus 143 llRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g 203 (298)
+..-=+..+..++-++..+..++.+++.|+.++..+.+.+ ...|..|..|++....+|
T Consensus 57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I---~~r~~~l~~raRAmq~nG 114 (265)
T COG3883 57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI---VERQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcC
Confidence 3333344455555555555566666665555555555443 455566666665544443
No 220
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=28.21 E-value=2e+02 Score=29.71 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 147 RDAAVRSRERKKMYVKDLEMKSRYLE 172 (298)
Q Consensus 147 ReSAqrSR~RKK~YV~eLE~kvk~LE 172 (298)
|.|-+..-+||++.++.|+...+.|.
T Consensus 87 r~a~k~~~~RK~~~i~~l~~~~~~ld 112 (425)
T PF04599_consen 87 RKALKNTIKRKREEIENLEDCIKNLD 112 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 78888888999999999988877443
No 221
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=28.10 E-value=2.6e+02 Score=22.06 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLG 179 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~ 179 (298)
.-++.|+..-+.|..-+.++.
T Consensus 26 ~t~~~L~~Ss~~L~~~~~e~~ 46 (92)
T PF03908_consen 26 LTLQTLEESSATLRSTNDEYD 46 (92)
T ss_pred HHHHHHHHhHHHHHHHHHHHH
Confidence 334444444444444444443
No 222
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=27.99 E-value=2.5e+02 Score=21.38 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 170 YLESECRKLGRLLHCVLAENQSLR 193 (298)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~ENq~LR 193 (298)
....++..|++++..|...-..+.
T Consensus 29 ~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 29 EQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444444444433
No 223
>PTZ00464 SNF-7-like protein; Provisional
Probab=27.91 E-value=5e+02 Score=24.12 Aligned_cols=50 Identities=12% Similarity=0.171 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Q 022379 147 RDAAVRSRERKKMYVKDLEMKS---RYLESECRKL------GRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 147 ReSAqrSR~RKK~YV~eLE~kv---k~LE~EN~~L------~~ql~~L~~ENq~LRqqL 196 (298)
|..|.++=+|||.|-..|+... -.|++.+..+ ..-+..+..-|..|+...
T Consensus 60 K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~ 118 (211)
T PTZ00464 60 KQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQF 118 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887666543 3344433222 223344555555555443
No 224
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=27.90 E-value=3.3e+02 Score=30.07 Aligned_cols=68 Identities=19% Similarity=0.118 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH-----------------------------------HHHHHHH
Q 022379 146 NRDAAVRSRERKKMY-----VKDLEMKSRYLESECRKL-----------------------------------GRLLHCV 185 (298)
Q Consensus 146 NReSAqrSR~RKK~Y-----V~eLE~kvk~LE~EN~~L-----------------------------------~~ql~~L 185 (298)
+|......++|++.- +.....+...|+.+|.+| +.++..|
T Consensus 485 ~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~L 564 (716)
T KOG4593|consen 485 SSREQSLLFQREESELLREKIEQYLKELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEEL 564 (716)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhcccCCCcccccchhh
Q 022379 186 LAENQSLRFSLQKGNAYGASLTKQESAV 213 (298)
Q Consensus 186 ~~ENq~LRqqL~~~~a~g~~~~~qesAV 213 (298)
++||..||..+......+....-.+-+|
T Consensus 565 qaE~~~lk~~l~~le~~~~~~~d~~i~~ 592 (716)
T KOG4593|consen 565 QAELERLKERLTALEGDKMQFRDGEIAV 592 (716)
T ss_pred HHHHHHHHHHHHHHhccCCcccchhhHH
No 225
>PRK11546 zraP zinc resistance protein; Provisional
Probab=27.72 E-value=4.4e+02 Score=23.41 Aligned_cols=35 Identities=17% Similarity=0.099 Sum_probs=26.0
Q ss_pred CCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 022379 132 ADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEM 166 (298)
Q Consensus 132 ~Dd~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~ 166 (298)
.-++|.......|.+.=.++-..-|.+.|.+..|-
T Consensus 43 ~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~EL 77 (143)
T PRK11546 43 PLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEY 77 (143)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777778888888888888888877766653
No 226
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=27.51 E-value=4.9e+02 Score=27.12 Aligned_cols=17 Identities=6% Similarity=-0.042 Sum_probs=9.9
Q ss_pred CCCcccccccccchhhh
Q 022379 236 LPKPIWSHLESVPLVQV 252 (298)
Q Consensus 236 ~P~~~~~~~~~~p~~~~ 252 (298)
+.+-.+.+.+.+|.+-+
T Consensus 199 ~~~e~~~~~v~lp~d~~ 215 (514)
T TIGR03319 199 HVAETTVSVVNLPNDEM 215 (514)
T ss_pred hhhhheeeeEEcCChhh
Confidence 34455556666776654
No 227
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=27.48 E-value=1.6e+02 Score=25.12 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCV 185 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L 185 (298)
+.++.++..|+.+..+|..+++.+
T Consensus 108 ~~~~~~l~~L~~~i~~L~~~~~~~ 131 (134)
T PF07047_consen 108 EELQERLEELEERIEELEEQVEKQ 131 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777776665544
No 228
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=27.42 E-value=1.6e+02 Score=25.04 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 022379 163 DLEMKSRYLESECRKL 178 (298)
Q Consensus 163 eLE~kvk~LE~EN~~L 178 (298)
.||++...|.-++.-|
T Consensus 83 ~LeEENNlLklKievL 98 (108)
T cd07429 83 QLEEENNLLKLKIEVL 98 (108)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444443333
No 229
>PRK02119 hypothetical protein; Provisional
Probab=27.38 E-value=3e+02 Score=21.42 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCV 185 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L 185 (298)
..+|.|+..||....-...-++.|
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~L 28 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEEL 28 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666655554444443
No 230
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=27.37 E-value=1.4e+02 Score=30.42 Aligned_cols=43 Identities=28% Similarity=0.222 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 022379 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLA-------ENQSLRFSLQ 197 (298)
Q Consensus 155 ~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~-------ENq~LRqqL~ 197 (298)
.|-|.....||.-+..+++||+.|+-+++.+.. |++.|...|.
T Consensus 123 ~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 123 MKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHH
Confidence 467778889999999999999998888776544 5566655543
No 231
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=27.28 E-value=1.4e+02 Score=28.33 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=37.4
Q ss_pred hhHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 135 PISKKRR--RQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQ 190 (298)
Q Consensus 135 ~e~KR~R--RllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq 190 (298)
+.-..|| -+.||.+==.+-| +-+.-+..|..++..|+..|.+|-+++.-|+.=+.
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr-~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~ 138 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELR-KQQQTISSLRREVESLRADNVKLYEKIRYLQSYNN 138 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcc
Confidence 4455554 4555544444332 23456789999999999999999999887766543
No 232
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=27.13 E-value=5.9e+02 Score=26.71 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=37.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 143 QLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (298)
Q Consensus 143 llRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LR 193 (298)
.-+|.-+|++--.|-...-.+|..+++.|-.+-.+|..+.+.|.++-..|.
T Consensus 128 a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 128 ARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888877777777788888888887777777666666666655554
No 233
>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46. Homologs of CDC45 have been identified in human [], mouse and the smut fungus, Melampsora spp., (tsd2 protein) among others.; GO: 0006270 DNA-dependent DNA replication initiation
Probab=27.04 E-value=74 Score=33.74 Aligned_cols=7 Identities=14% Similarity=0.463 Sum_probs=3.1
Q ss_pred hhhcCCC
Q 022379 73 VFVDQPS 79 (298)
Q Consensus 73 ~l~d~p~ 79 (298)
.+.+.|.
T Consensus 123 ~l~~~~~ 129 (622)
T PF02724_consen 123 ALEEMPE 129 (622)
T ss_pred Hhhhccc
Confidence 3444444
No 234
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=26.89 E-value=1.5e+02 Score=23.87 Aligned_cols=31 Identities=26% Similarity=0.300 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 169 RYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
..+..+..+|...++.+..+|..|..++...
T Consensus 76 ~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 76 PYKKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666788888888999999998888654
No 235
>PF13879 KIAA1430: KIAA1430 homologue
Probab=26.85 E-value=3e+02 Score=21.19 Aligned_cols=12 Identities=42% Similarity=0.307 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 022379 185 VLAENQSLRFSL 196 (298)
Q Consensus 185 L~~ENq~LRqqL 196 (298)
+..||+.|..+|
T Consensus 85 I~~EN~~l~~RL 96 (98)
T PF13879_consen 85 IDRENQKLLKRL 96 (98)
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 236
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=26.75 E-value=1.2e+02 Score=22.95 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 163 DLEMKSRYLESECRKLGRLLHCVLAEN 189 (298)
Q Consensus 163 eLE~kvk~LE~EN~~L~~ql~~L~~EN 189 (298)
.+|.|+..||++.+..+.+.+....+-
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~ 55 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARA 55 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666666655555444443
No 237
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=26.45 E-value=4e+02 Score=26.54 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=20.6
Q ss_pred ChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 134 DPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSR 169 (298)
Q Consensus 134 d~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk 169 (298)
.+...|..-+..+-+--.+-|+-|+-.++.||.-+.
T Consensus 14 ~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLq 49 (307)
T PF10481_consen 14 TRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQ 49 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344555555555555555566666666666665544
No 238
>PRK14148 heat shock protein GrpE; Provisional
Probab=26.42 E-value=2e+02 Score=26.50 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 164 LEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 164 LE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
|+.++..|+.++.+|+.++..+.++...+|.+..
T Consensus 45 l~~~l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~ 78 (195)
T PRK14148 45 AKDTIKELEDSCDQFKDEALRAKAEMENIRKRAE 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444443
No 239
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.14 E-value=2.5e+02 Score=29.04 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=45.9
Q ss_pred HHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccc
Q 022379 142 RQLRNRDAAVRSRERK--KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLT 207 (298)
Q Consensus 142 RllRNReSAqrSR~RK--K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g~~~~ 207 (298)
+..||+.|.+-.+..+ +.|...|-.+++.+..+...+..++..+..+-+.+...+++.-.-.++.+
T Consensus 49 ~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~~~~VPvg 116 (429)
T COG0172 49 QAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNIPHESVPVG 116 (429)
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCccccCcC
Confidence 3446666666654322 33788888888888888888888888888888888777777544444443
No 240
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.00 E-value=1.8e+02 Score=27.58 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=20.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 022379 141 RRQLRNRDAAVRSRERKKMYVKDLEM 166 (298)
Q Consensus 141 RRllRNReSAqrSR~RKK~YV~eLE~ 166 (298)
+-.-+|+..|-++=+|||.|=+.|.+
T Consensus 54 k~~tkNKR~AlqaLkrKK~~E~qL~q 79 (221)
T KOG1656|consen 54 KYGTKNKRMALQALKRKKRYEKQLAQ 79 (221)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34457999999999999998666654
No 241
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=25.94 E-value=5.1e+02 Score=25.45 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=13.5
Q ss_pred CCCCCCCCcchHHHHHhhccCCC
Q 022379 32 PSPDGSVSPWIGDIESMLMNDND 54 (298)
Q Consensus 32 ~~p~~~~~~~~~eie~~lm~d~~ 54 (298)
+.|.-|.-|-+.+=..+|....+
T Consensus 181 Ph~G~SYNP~~edhqelL~~a~~ 203 (387)
T PF07767_consen 181 PHPGQSYNPSFEDHQELLAKAVE 203 (387)
T ss_pred CCCCCCCCcCHHHHHHHHHHHHH
Confidence 34444556667776666665444
No 242
>PRK09343 prefoldin subunit beta; Provisional
Probab=25.66 E-value=2.6e+02 Score=23.42 Aligned_cols=61 Identities=25% Similarity=0.290 Sum_probs=28.1
Q ss_pred CCChhHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 132 ADDPISKKRRRQL--RNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (298)
Q Consensus 132 ~Dd~e~KR~RRll--RNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqq 195 (298)
+|.+.=|-.-+++ ..+..|..-=..|++|+ +.+++.|+.+-..|++++..++..-+.+.++
T Consensus 52 ~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i---e~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 52 DDTPIYKIVGNLLVKVDKTKVEKELKERKELL---ELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred CcchhHHHhhHHHhhccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444443322 33444443333333333 3555555555555555555555444444333
No 243
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=25.57 E-value=2.3e+02 Score=24.81 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.|+..+|..+..+..+..+|+.+-....+....|++.|..
T Consensus 47 ~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~ 86 (162)
T PF05565_consen 47 KVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLD 86 (162)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777778877777777777777777754
No 244
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=25.57 E-value=8.5e+02 Score=28.24 Aligned_cols=62 Identities=26% Similarity=0.337 Sum_probs=40.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHhc
Q 022379 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLG------------RLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~------------~ql~~L~~ENq~LRqqL~~~ 199 (298)
..+-|-+.||+-.+.++.+...|-.+.|.+-..+.++++.|. +--..+..|-..|++++.+.
T Consensus 1028 ~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kk 1101 (1189)
T KOG1265|consen 1028 AGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKK 1101 (1189)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777777777777766666655553 33334566777788777664
No 245
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=25.56 E-value=2.7e+02 Score=24.99 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.|+..|+.++..++.++..|+..+.....+-...+..|.+
T Consensus 79 ~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIar 118 (158)
T PF09486_consen 79 RYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIAR 118 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666655555555555555544443
No 246
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.53 E-value=5.4e+02 Score=27.78 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhc
Q 022379 158 KMYVKDLEMKSRYLESECRKL-------GRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L-------~~ql~~L~~ENq~LRqqL~~~ 199 (298)
+.|+..++.+.+.++.....| ..+++.|+.+|..|+.++...
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467777766666555544444 555667777777777777654
No 247
>PF15058 Speriolin_N: Speriolin N terminus
Probab=25.51 E-value=70 Score=29.95 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 022379 177 KLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 177 ~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
-|++|++.|+.||.+||.++.-
T Consensus 9 GlrhqierLv~ENeeLKKlVrL 30 (200)
T PF15058_consen 9 GLRHQIERLVRENEELKKLVRL 30 (200)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH
Confidence 4678888889999999988765
No 248
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=25.51 E-value=2.5e+02 Score=24.85 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
++|+.....+++...+|..++..+..+++.+-++-
T Consensus 104 ~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~ 138 (145)
T COG1730 104 EELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQ 138 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666667777777777777777776654
No 249
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=25.39 E-value=1.7e+02 Score=28.25 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.-+..|+.++..|.++|.+|+.+++.+..++....+-+..
T Consensus 32 ~l~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~ 71 (308)
T PF11382_consen 32 NLIDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAA 71 (308)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888888888888888888888777666544
No 250
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=25.29 E-value=1.3e+02 Score=27.86 Aligned_cols=25 Identities=24% Similarity=0.085 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 168 SRYLESECRKLGRLLHCVLAENQSL 192 (298)
Q Consensus 168 vk~LE~EN~~L~~ql~~L~~ENq~L 192 (298)
...+.+||.+|++++..|..++..|
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777744
No 251
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.28 E-value=5.2e+02 Score=29.91 Aligned_cols=60 Identities=20% Similarity=0.311 Sum_probs=36.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 141 RRQLRNRDAAVRSRERKKMYVKDL-----------------EMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 141 RRllRNReSAqrSR~RKK~YV~eL-----------------E~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
|++.+-|..|...-.-|-.|..+| |.|...|+.+...|+++++.|..+-.-||......+
T Consensus 283 rel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG 359 (1243)
T KOG0971|consen 283 RELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKG 359 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566777766666666665544 233344555666667777777666666776666543
No 252
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=25.24 E-value=2.4e+02 Score=27.72 Aligned_cols=32 Identities=41% Similarity=0.504 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LR 193 (298)
+.|+.+.+.+..+...++.++..+..++..|.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (389)
T PRK03992 18 RQLELKLRDLEAENEKLERELERLKSELEKLK 49 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444455555555555555555555555444
No 253
>PRK00106 hypothetical protein; Provisional
Probab=25.09 E-value=5.8e+02 Score=27.06 Aligned_cols=15 Identities=7% Similarity=-0.141 Sum_probs=8.1
Q ss_pred Ccccccccccchhhh
Q 022379 238 KPIWSHLESVPLVQV 252 (298)
Q Consensus 238 ~~~~~~~~~~p~~~~ 252 (298)
+=.+.+.+.+|.+-+
T Consensus 222 ~e~tvs~v~lp~dem 236 (535)
T PRK00106 222 TEQTITTVHLPDDNM 236 (535)
T ss_pred hhheeeeEEcCChHh
Confidence 334455566666544
No 254
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=24.95 E-value=4.8e+02 Score=24.25 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 167 kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
.+..+....+.|+.++..|...|..|..++.
T Consensus 217 E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~ 247 (312)
T PF00038_consen 217 ELKELRRQIQSLQAELESLRAKNASLERQLR 247 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhhhhhhccccchhhhhhhHH
Confidence 3334444444555555555555555555553
No 255
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=24.87 E-value=7e+02 Score=24.87 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 175 CRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 175 N~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
++.|++++..|.+|+..|+.+|..
T Consensus 180 vN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 180 VNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 678999999999999999999975
No 256
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=24.73 E-value=5.6e+02 Score=23.66 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
..+=.-|+...+.|..-...+..-+..+..++..|.....+
T Consensus 184 ~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~ 224 (251)
T PF09753_consen 184 LAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSK 224 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445666667777777777788888899999999887543
No 257
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=24.71 E-value=1.8e+02 Score=30.13 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 164 LEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 164 LE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
+|.+-+.+..|+..|++-+..+.+..|.||-.+
T Consensus 264 ee~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNe 296 (561)
T KOG1103|consen 264 EEKRQKMLKEEMESLKEIVKDLEADHQHLRPNE 296 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCccc
Confidence 333444444444444444444444444444333
No 258
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=24.68 E-value=3.5e+02 Score=23.81 Aligned_cols=46 Identities=17% Similarity=0.106 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022379 156 RKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (298)
Q Consensus 156 RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a 201 (298)
..+.|+..||.+++.+......+..+-..+...-..|-..+...+.
T Consensus 28 ~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~ 73 (236)
T PF09325_consen 28 EIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAK 73 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3588999999999998888888877766666666666655555443
No 259
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=24.61 E-value=41 Score=29.90 Aligned_cols=37 Identities=30% Similarity=0.277 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 163 eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
.+-..+..++.+.++|+.++..|..||.-||..+...
T Consensus 12 ~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~t 48 (181)
T PF09311_consen 12 ALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANT 48 (181)
T ss_dssp HHHHHHHHHHHCCHHHHT-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666667777778888888888888877653
No 260
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=24.46 E-value=99 Score=27.96 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022379 176 RKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 176 ~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
.+.++.+.+|..||..||..|+
T Consensus 156 ~~~qe~i~qL~~EN~~LRelL~ 177 (181)
T PF05769_consen 156 QEEQEIIAQLETENKGLRELLQ 177 (181)
T ss_pred HhHHHHHHHHHHHHHHHHHHHh
Confidence 3557889999999999999985
No 261
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=24.43 E-value=6.4e+02 Score=24.21 Aligned_cols=16 Identities=13% Similarity=0.173 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhh
Q 022379 218 SLLLGSLLWFLGIMCL 233 (298)
Q Consensus 218 sl~L~sllw~L~i~cL 233 (298)
.+++++++|..+.+.+
T Consensus 339 ~~~~gl~l~~~~~l~~ 354 (362)
T TIGR01010 339 TFVILLILYGVLSLLL 354 (362)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555565544443
No 262
>PRK14143 heat shock protein GrpE; Provisional
Probab=24.37 E-value=2.2e+02 Score=26.98 Aligned_cols=9 Identities=0% Similarity=0.051 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 022379 166 MKSRYLESE 174 (298)
Q Consensus 166 ~kvk~LE~E 174 (298)
.++..+.++
T Consensus 88 d~~lR~~Ad 96 (238)
T PRK14143 88 SQYMRIAAD 96 (238)
T ss_pred HHHHHHHHH
Confidence 333333333
No 263
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=24.34 E-value=3.6e+02 Score=23.10 Aligned_cols=15 Identities=13% Similarity=0.142 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 022379 175 CRKLGRLLHCVLAEN 189 (298)
Q Consensus 175 N~~L~~ql~~L~~EN 189 (298)
..+|+..++.+..++
T Consensus 64 L~~Le~~~~~~~~e~ 78 (160)
T PF13094_consen 64 LQELEKNAKALERER 78 (160)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 264
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=24.07 E-value=5e+02 Score=24.64 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYG 203 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g 203 (298)
|+.-|-.....-+.|...|+.++..|..--....+-++..+.++
T Consensus 113 yi~~L~~~k~kqe~e~s~L~k~vtAL~iIk~~YEqM~~~~qdnp 156 (229)
T KOG1319|consen 113 YIQFLHKEKKKQEEEVSTLRKDVTALKIIKVNYEQMVKAHQDNP 156 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 44444444444444455555555555444444445555555554
No 265
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.87 E-value=5.9e+02 Score=28.94 Aligned_cols=57 Identities=11% Similarity=0.030 Sum_probs=30.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 022379 141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLH-------CVLAENQSLRFSLQ 197 (298)
Q Consensus 141 RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~-------~L~~ENq~LRqqL~ 197 (298)
....++-..-..-+++-...++.|-+..+.|+.+|.+|..+++ ++..++.-|+.||.
T Consensus 653 e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 653 EELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444444444444455555555555555555555544 55666666666665
No 266
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=23.68 E-value=2.2e+02 Score=23.43 Aligned_cols=39 Identities=21% Similarity=0.188 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcc
Q 022379 162 KDLEMKSRYLESECRKL--GRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L--~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
...+.|+..+|.+...| +..++.|..+-..++-.+....
T Consensus 45 ~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~ 85 (106)
T PF10805_consen 45 DEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELS 85 (106)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 33477777777777777 7777777777777777665544
No 267
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=23.51 E-value=78 Score=33.83 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022379 174 ECRKLGRLLHCVLAENQSLRFS 195 (298)
Q Consensus 174 EN~~L~~ql~~L~~ENq~LRqq 195 (298)
+|+-|..+++.|++|||.||+.
T Consensus 651 eNe~l~aelk~lreenq~lr~~ 672 (673)
T KOG4378|consen 651 ENEMLKAELKFLREENQTLRCG 672 (673)
T ss_pred hhHHHHHHHHHHHHhhhhhhcc
Confidence 5666778888888888888864
No 268
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=23.30 E-value=3.6e+02 Score=23.67 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022379 175 CRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 175 N~~L~~ql~~L~~ENq~LRqqL 196 (298)
..+-++++..|..||..||.=-
T Consensus 77 l~~re~~i~rL~~ENe~lR~Wa 98 (135)
T TIGR03495 77 LAQREQRIERLKRENEDLRRWA 98 (135)
T ss_pred HHHHHHHHHHHHHcCHHHHHHh
Confidence 3344667778888888887543
No 269
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=23.26 E-value=5e+02 Score=24.28 Aligned_cols=16 Identities=0% Similarity=0.302 Sum_probs=11.4
Q ss_pred CCCcchHHHHHhhccC
Q 022379 37 SVSPWIGDIESMLMND 52 (298)
Q Consensus 37 ~~~~~~~eie~~lm~d 52 (298)
+....+.|+++|+-.-
T Consensus 23 ~~~g~vaEL~qli~~~ 38 (192)
T PF11180_consen 23 AAQGNVAELQQLIQDH 38 (192)
T ss_pred cCcccHHHHHHHHHcC
Confidence 3456889999887543
No 270
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=23.11 E-value=3.4e+02 Score=20.66 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LR 193 (298)
|..|...|..|..+..+|...+..+..+-+..+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak 37 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQAAK 37 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666555555544444333
No 271
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=22.96 E-value=2.7e+02 Score=29.76 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 022379 179 GRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 179 ~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
+..+..|..||..|+.++....
T Consensus 565 ~~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4667789999999999996543
No 272
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=22.75 E-value=2.5e+02 Score=22.18 Aligned_cols=10 Identities=30% Similarity=0.169 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 022379 186 LAENQSLRFS 195 (298)
Q Consensus 186 ~~ENq~LRqq 195 (298)
..+...++++
T Consensus 90 ~~~~~~~~~~ 99 (104)
T PF13600_consen 90 QDEIQALEAQ 99 (104)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 273
>PRK09343 prefoldin subunit beta; Provisional
Probab=22.71 E-value=3.9e+02 Score=22.35 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
..+|+.++..++.++..|..+...+...-..+..+|...
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~l 111 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEM 111 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777777777777777666553
No 274
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=22.68 E-value=3.1e+02 Score=22.36 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 022379 167 KSRYLESECRKLGRL 181 (298)
Q Consensus 167 kvk~LE~EN~~L~~q 181 (298)
.+..|+.....++.+
T Consensus 101 ~~~~l~~~l~~l~~~ 115 (126)
T TIGR00293 101 AIEKLQEALAELASR 115 (126)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 275
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=22.63 E-value=6.8e+02 Score=28.56 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=34.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 144 LRNRDAAVRSRERKKMYVKDLEMKSRYLESE--------------------CRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 144 lRNReSAqrSR~RKK~YV~eLE~kvk~LE~E--------------------N~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
.+-|++-+.-|.+++...+.+..++..+.+. -+-+..++..+..|++.|..+|+..
T Consensus 614 ~~Ere~~R~l~E~e~i~~k~~ke~~~~~~~te~~aK~~k~~d~ed~e~lD~d~i~~~q~eel~Ke~kElq~rL~~q 689 (988)
T KOG2072|consen 614 KKEREAKRILREKEAIRKKELKERLEQLKQTEVGAKGGKEKDLEDLEKLDADQIKARQIEELEKERKELQSRLQYQ 689 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555554421 1223678889999999999998774
No 276
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=22.59 E-value=4.4e+02 Score=21.71 Aligned_cols=32 Identities=19% Similarity=0.237 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~L 192 (298)
+.-|+.+...++++..+|+..++.|...-...
T Consensus 82 ~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~ 113 (118)
T cd04776 82 LEKIEKRRAELEQQRRDIDAALAELDAAEERC 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555554444443333
No 277
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=22.57 E-value=3e+02 Score=27.37 Aligned_cols=47 Identities=28% Similarity=0.404 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 152 RSRERKKMYVKDLEMKSR--------------YLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 152 rSR~RKK~YV~eLE~kvk--------------~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.+..|.+.|+++.|.--. .|+...-+...++..|.+||..|...|.+
T Consensus 21 q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~ 81 (305)
T PF14915_consen 21 QNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEK 81 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHH
Confidence 466778889888765221 23444556678889999999999999855
No 278
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=22.54 E-value=74 Score=23.66 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESECRKL 178 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L 178 (298)
-+.+|.+||.+|+.|..-|..|
T Consensus 16 l~vrv~eLEeEV~~LrKINrdL 37 (48)
T PF14077_consen 16 LRVRVSELEEEVRTLRKINRDL 37 (48)
T ss_pred heeeHHHHHHHHHHHHHHhHHH
Confidence 3456777777777777766665
No 279
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=22.41 E-value=1.3e+02 Score=24.52 Aligned_cols=28 Identities=21% Similarity=0.204 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 163 DLEMKSRYLESECRKLGRLLHCVLAENQ 190 (298)
Q Consensus 163 eLE~kvk~LE~EN~~L~~ql~~L~~ENq 190 (298)
.||.+...+........++++.|..||+
T Consensus 40 ~lE~E~~~l~~~l~~~E~eL~~LrkENr 67 (85)
T PF15188_consen 40 SLEKELNELKEKLENNEKELKLLRKENR 67 (85)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhh
Confidence 4455555555555555555555555553
No 280
>KOG4786 consensus Ubinuclein, nuclear protein interacting with cellular and viral transcription factors [Transcription; Signal transduction mechanisms]
Probab=22.34 E-value=98 Score=34.49 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=16.7
Q ss_pred CCCCcccHHHHHhhhhhcCCC
Q 022379 59 LEPNQQSLDDFFADVFVDQPS 79 (298)
Q Consensus 59 ~~~~~~~~~~f~~d~l~d~p~ 79 (298)
.+++.-.|++||-|-|||--.
T Consensus 52 ~~~~~~~C~~F~~~EiV~~~~ 72 (1136)
T KOG4786|consen 52 LQHFNRKCDDFIDDEIVDDTT 72 (1136)
T ss_pred cccccccCcccccHHHhhhcc
Confidence 457777899999999997444
No 281
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=22.22 E-value=2.5e+02 Score=29.44 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a 201 (298)
.+|..++..|.++|.+|.+.+.....+-..|+.+|.+.+.
T Consensus 4 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 43 (512)
T TIGR03689 4 RELQATNSSLGARNAKLAELLKAARDKLSKLKSQLEQLAQ 43 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677788888999999999999999999999999987543
No 282
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=22.11 E-value=34 Score=27.76 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.+..|..++..|..++..|+.++..+...+..|+..|..
T Consensus 33 ~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~ 71 (131)
T PF05103_consen 33 ELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQ 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhh
Confidence 345566666666666666666666666666666666533
No 283
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=22.09 E-value=2.3e+02 Score=25.76 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 171 LESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 171 LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
.|.|++.|++-|..-...-..||++|
T Consensus 41 vEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 41 VEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34444444444444444444444444
No 284
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=22.07 E-value=1.9e+02 Score=21.38 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLA 187 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ 187 (298)
+++-...|.++..+.+++..|+++-+.|..
T Consensus 11 qe~~d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 11 QEHYDNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp ----THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 456678899999998888888877555544
No 285
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=22.07 E-value=2.6e+02 Score=24.70 Aligned_cols=43 Identities=14% Similarity=0.148 Sum_probs=22.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 139 KRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRL 181 (298)
Q Consensus 139 R~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~q 181 (298)
...++.++.+.=..++++=.+-+.+|..+...+.++++++..+
T Consensus 95 Aie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 95 AIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444554555555555555555555555444
No 286
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=22.02 E-value=2.7e+02 Score=23.23 Aligned_cols=30 Identities=30% Similarity=0.269 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 164 LEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (298)
Q Consensus 164 LE~kvk~LE~EN~~L~~ql~~L~~ENq~LR 193 (298)
|+..+..++.+...++.++..+...-+.|.
T Consensus 106 l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 106 LEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444333
No 287
>PRK14160 heat shock protein GrpE; Provisional
Probab=21.93 E-value=3.2e+02 Score=25.54 Aligned_cols=38 Identities=26% Similarity=0.239 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+..|+.++..|+.++..|+.++..+.++...+|.+..+
T Consensus 63 ~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~k 100 (211)
T PRK14160 63 NNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAK 100 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777655
No 288
>PRK04406 hypothetical protein; Provisional
Probab=21.73 E-value=4e+02 Score=20.90 Aligned_cols=24 Identities=17% Similarity=0.140 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCV 185 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L 185 (298)
..+|.|+..||....-+..-++.|
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~L 30 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEEL 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666665555444444
No 289
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=21.30 E-value=6.3e+02 Score=28.91 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 135 PISKKRRRQLRNR-DAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 135 ~e~KR~RRllRNR-eSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
++.+.+.+....| +.|+.......+-+..++.+...+..+..+...++..+..+-..+++++....
T Consensus 465 ~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~ 531 (1201)
T PF12128_consen 465 EEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQ 531 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334443333333 45566666666667777777777777777777777777777777777776543
No 290
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=21.21 E-value=7.3e+02 Score=26.03 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRL 181 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~q 181 (298)
=++.+...|..++.|+.||.+|.+.
T Consensus 46 i~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 46 IKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888899999888877543
No 291
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=21.13 E-value=4.4e+02 Score=21.16 Aligned_cols=61 Identities=21% Similarity=0.085 Sum_probs=46.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcc
Q 022379 140 RRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRK-------LGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 140 ~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~-------L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
..++...+......=..|+.-+..||.++..|+.+..+ +.+....+..||..|+.++.+.+
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~ 72 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSS 72 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Confidence 34566667777777778888888999999888877544 45667788999999998886643
No 292
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=21.02 E-value=4.2e+02 Score=20.81 Aligned_cols=29 Identities=21% Similarity=0.050 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 170 YLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.+..+|.+|+-.+..|..|++.++..|..
T Consensus 40 ~~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 40 ELLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666777777777666654
No 293
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=20.99 E-value=3.4e+02 Score=23.30 Aligned_cols=35 Identities=20% Similarity=0.147 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 164 LEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 164 LE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
-..+++.|+.||....+++.....|...|..++..
T Consensus 102 Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 136 (144)
T PF11221_consen 102 QLKRIKELEEENEEAEEELQEAVKEAEELLKQVQE 136 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777777777777777777777766653
No 294
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=20.88 E-value=7.8e+02 Score=23.93 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=28.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 143 QLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAE 188 (298)
Q Consensus 143 llRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~E 188 (298)
+.+.+...+.-..|-..--..||.-|+.|..+|..+......+..+
T Consensus 55 l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~e 100 (309)
T PF09728_consen 55 LQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRARE 100 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666656666777777777777777665444433333
No 295
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=20.87 E-value=3.9e+02 Score=24.14 Aligned_cols=33 Identities=18% Similarity=0.166 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 155 ERKKMYVKDLEMKSRYLESECRKLGRLLHCVLA 187 (298)
Q Consensus 155 ~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ 187 (298)
..+|.|+..||..++.+......|..+-..|..
T Consensus 7 ~~~k~~i~~Le~~Lk~l~~~~~~l~~~r~ela~ 39 (216)
T cd07627 7 IEKKQYLDSLESQLKQLYKSLELVSSQRKELAS 39 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999988877666444333333
No 296
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=20.68 E-value=5.4e+02 Score=22.01 Aligned_cols=42 Identities=14% Similarity=0.008 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 150 AVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQS 191 (298)
Q Consensus 150 AqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~ 191 (298)
...||.-....+..|+..+..+.....+|..+-..|.+-++.
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~ 48 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQS 48 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH
Confidence 333444444445555555544444333333333333333333
No 297
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=20.43 E-value=3.3e+02 Score=26.52 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=33.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 137 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAE 188 (298)
Q Consensus 137 ~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~E 188 (298)
.+..|+.+.+..+.-+.++-.-..+..||+++..++.++.-...++..+..+
T Consensus 143 ~R~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 143 SRDRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 3444556666666555444444467888888888888877777666665554
No 298
>PRK14161 heat shock protein GrpE; Provisional
Probab=20.11 E-value=3.2e+02 Score=24.72 Aligned_cols=36 Identities=22% Similarity=0.144 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
..++.++..|+.+..+++.++..+.+|-..+|.+..
T Consensus 22 ~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ 57 (178)
T PRK14161 22 ETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLE 57 (178)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444455555555554443
No 299
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=20.05 E-value=4e+02 Score=20.80 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAE 188 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~E 188 (298)
+..++.+...++.+|.+|+-+...+..-
T Consensus 44 l~~l~~~~~~l~~e~~~L~lE~~~l~~~ 71 (97)
T PF04999_consen 44 LQQLEKEIDQLQEENERLRLEIATLSSP 71 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCH
Confidence 6777777777777777776666655543
Done!