Query 022379
Match_columns 298
No_of_seqs 157 out of 758
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 04:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022379.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022379hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t2k_D Cyclic-AMP-dependent tr 99.5 1.3E-13 4.4E-18 101.4 9.3 60 138-197 1-60 (61)
2 2wt7_A Proto-oncogene protein 99.4 5.8E-13 2E-17 98.8 10.1 62 137-198 1-62 (63)
3 1dh3_A Transcription factor CR 99.4 1.8E-13 6E-18 99.8 6.9 50 138-187 1-50 (55)
4 1jnm_A Proto-oncogene C-JUN; B 99.4 2.7E-13 9.4E-18 100.1 7.0 61 138-198 1-61 (62)
5 1ci6_A Transcription factor AT 99.2 3.9E-11 1.4E-15 89.3 7.5 60 138-197 2-61 (63)
6 2dgc_A Protein (GCN4); basic d 99.1 2.1E-10 7E-15 85.6 6.8 48 139-186 10-57 (63)
7 1hjb_A Ccaat/enhancer binding 98.8 4.5E-08 1.5E-12 77.5 10.4 63 138-200 15-77 (87)
8 1gu4_A CAAT/enhancer binding p 98.8 2.3E-08 8E-13 77.7 8.5 61 138-198 15-75 (78)
9 1gd2_E Transcription factor PA 98.8 3E-08 1E-12 75.8 8.8 57 140-196 10-66 (70)
10 2oqq_A Transcription factor HY 98.5 1.7E-07 5.7E-12 65.6 6.0 40 158-197 2-41 (42)
11 2wt7_B Transcription factor MA 98.2 1E-05 3.5E-10 64.6 10.8 65 135-199 24-88 (90)
12 3a5t_A Transcription factor MA 98.2 4.6E-08 1.6E-12 80.2 -4.0 59 134-199 33-91 (107)
13 1skn_P DNA-binding domain of S 96.2 0.002 6.8E-08 51.6 2.2 32 135-166 59-90 (92)
14 2kz5_A Transcription factor NF 90.9 0.02 6.8E-07 45.8 -2.0 25 135-159 63-87 (91)
15 2c9l_Y EB1, zebra, BZLF1 trans 90.5 1.5 5E-05 32.5 7.9 44 141-198 4-47 (63)
16 2yy0_A C-MYC-binding protein; 87.0 1.3 4.3E-05 31.8 5.3 33 166-198 19-51 (53)
17 1nkp_B MAX protein, MYC proto- 86.2 1.3 4.6E-05 33.3 5.5 31 170-200 51-81 (83)
18 3s9g_A Protein hexim1; cyclin 85.4 1.6 5.3E-05 35.6 5.7 38 163-200 41-92 (104)
19 1gd2_E Transcription factor PA 85.0 3.6 0.00012 31.1 7.3 35 159-193 36-70 (70)
20 3mq7_A Bone marrow stromal ant 84.8 3.8 0.00013 34.2 7.9 40 160-199 72-111 (121)
21 3oja_B Anopheles plasmodium-re 84.2 6.4 0.00022 37.8 10.5 47 153-199 531-577 (597)
22 2w6a_A ARF GTPase-activating p 82.3 2.1 7.1E-05 32.1 4.8 33 162-194 30-62 (63)
23 2jee_A YIIU; FTSZ, septum, coi 81.1 5.1 0.00017 31.3 6.9 31 167-197 35-65 (81)
24 1nkp_A C-MYC, MYC proto-oncoge 80.4 2.9 0.0001 32.3 5.4 36 158-200 51-86 (88)
25 1kd8_A GABH AIV, GCN4 acid bas 80.3 2.2 7.6E-05 28.8 4.0 30 160-189 2-31 (36)
26 1nkp_B MAX protein, MYC proto- 78.4 2.8 9.4E-05 31.5 4.6 36 157-192 45-80 (83)
27 2oxj_A Hybrid alpha/beta pepti 77.1 3.4 0.00012 27.7 4.1 24 160-183 2-25 (34)
28 1nlw_A MAD protein, MAX dimeri 76.8 4 0.00014 31.1 5.1 35 157-198 45-79 (80)
29 3o0z_A RHO-associated protein 75.8 23 0.0008 30.8 10.2 51 148-198 79-129 (168)
30 3i00_A HIP-I, huntingtin-inter 75.2 8.1 0.00028 31.8 6.9 47 153-199 34-80 (120)
31 1kd8_B GABH BLL, GCN4 acid bas 74.7 6.8 0.00023 26.5 5.1 28 160-187 2-29 (36)
32 3m48_A General control protein 73.9 3.9 0.00013 27.2 3.7 25 161-185 2-26 (33)
33 1nkp_A C-MYC, MYC proto-oncoge 72.5 8.1 0.00028 29.7 5.9 8 173-180 73-80 (88)
34 3efg_A Protein SLYX homolog; x 72.2 11 0.00039 28.6 6.6 39 159-197 14-52 (78)
35 2jee_A YIIU; FTSZ, septum, coi 71.9 10 0.00035 29.5 6.3 37 160-196 7-43 (81)
36 1fmh_A General control protein 71.4 8.6 0.0003 25.1 4.8 28 161-188 3-30 (33)
37 3c3f_A Alpha/beta peptide with 70.3 6.3 0.00021 26.4 4.1 26 160-185 2-27 (34)
38 1deb_A APC protein, adenomatou 69.9 4.5 0.00015 29.4 3.6 23 176-198 6-28 (54)
39 1zme_C Proline utilization tra 69.8 4.1 0.00014 28.7 3.4 26 157-182 42-67 (70)
40 1am9_A Srebp-1A, protein (ster 69.8 7.2 0.00025 29.5 5.0 52 148-199 12-76 (82)
41 2oqq_A Transcription factor HY 68.8 11 0.00036 26.3 5.1 24 159-182 17-40 (42)
42 1hjb_A Ccaat/enhancer binding 68.1 36 0.0012 26.5 8.7 54 143-196 27-80 (87)
43 1nlw_A MAD protein, MAX dimeri 67.3 11 0.00038 28.6 5.6 23 175-197 49-71 (80)
44 3c3g_A Alpha/beta peptide with 67.3 11 0.00036 25.1 4.7 25 161-185 2-26 (33)
45 1dip_A Delta-sleep-inducing pe 66.9 4 0.00014 31.7 3.0 30 168-197 17-46 (78)
46 2hy6_A General control protein 66.1 7.9 0.00027 25.9 3.9 26 160-185 2-27 (34)
47 2wq1_A General control protein 66.0 12 0.0004 24.9 4.7 25 161-185 2-26 (33)
48 3m91_A Proteasome-associated A 64.3 26 0.0009 24.9 6.7 40 160-199 10-49 (51)
49 2bni_A General control protein 64.3 9 0.00031 25.6 3.9 26 160-185 2-27 (34)
50 4ani_A Protein GRPE; chaperone 64.1 10 0.00035 33.9 5.6 38 161-198 61-98 (213)
51 1gu4_A CAAT/enhancer binding p 63.0 48 0.0017 25.3 8.7 44 143-186 27-70 (78)
52 3swy_A Cyclic nucleotide-gated 62.7 22 0.00075 25.0 5.9 34 163-196 2-35 (46)
53 1uo4_A General control protein 62.1 10 0.00036 25.3 3.9 24 161-184 3-26 (34)
54 2lz1_A Nuclear factor erythroi 61.7 0.12 4.1E-06 41.3 -6.6 23 137-159 65-87 (90)
55 1dip_A Delta-sleep-inducing pe 61.3 8.7 0.0003 29.8 4.0 23 158-180 21-43 (78)
56 1dh3_A Transcription factor CR 61.2 11 0.00036 26.9 4.2 28 174-201 23-50 (55)
57 3m9b_A Proteasome-associated A 60.9 9.2 0.00031 35.3 4.7 43 158-200 53-95 (251)
58 3nmd_A CGMP dependent protein 60.9 9.7 0.00033 29.2 4.1 29 157-185 38-66 (72)
59 1wt6_A Myotonin-protein kinase 60.4 59 0.002 25.4 9.4 50 143-192 22-71 (81)
60 2j5u_A MREC protein; bacterial 60.0 3.7 0.00013 37.0 2.0 37 163-199 23-62 (255)
61 3a7p_A Autophagy protein 16; c 58.6 81 0.0028 27.1 9.9 38 161-198 98-135 (152)
62 1a93_B MAX protein, coiled coi 58.2 20 0.00068 23.9 4.7 28 171-198 5-32 (34)
63 1zxa_A CGMP-dependent protein 58.1 15 0.00052 27.6 4.7 31 157-187 23-53 (67)
64 1go4_E MAD1 (mitotic arrest de 58.0 31 0.0011 27.7 6.8 26 176-201 71-96 (100)
65 3he5_A Synzip1; heterodimeric 58.0 35 0.0012 23.9 6.2 37 160-196 4-47 (49)
66 3m9b_A Proteasome-associated A 57.8 11 0.00036 34.9 4.6 40 156-195 58-97 (251)
67 2akf_A Coronin-1A; coiled coil 57.5 14 0.00048 24.2 3.8 28 162-189 2-29 (32)
68 2er8_A Regulatory protein Leu3 56.4 6.1 0.00021 28.1 2.2 22 157-178 47-68 (72)
69 2zqm_A Prefoldin beta subunit 55.6 41 0.0014 25.8 7.1 43 157-199 68-110 (117)
70 2oa5_A Hypothetical protein BQ 55.2 8.2 0.00028 31.8 3.0 24 176-199 11-34 (110)
71 1fxk_A Prefoldin; archaeal pro 55.1 43 0.0015 25.3 7.1 42 157-198 63-104 (107)
72 3swf_A CGMP-gated cation chann 54.7 22 0.00074 27.4 5.1 35 162-196 3-37 (74)
73 3cve_A Homer protein homolog 1 54.2 43 0.0015 25.4 6.7 35 161-195 9-43 (72)
74 3oja_B Anopheles plasmodium-re 53.6 57 0.0019 31.2 9.1 23 173-195 544-566 (597)
75 4etp_A Kinesin-like protein KA 52.3 19 0.00066 34.4 5.6 35 162-196 20-54 (403)
76 2dfs_A Myosin-5A; myosin-V, in 51.8 69 0.0024 34.5 10.3 22 178-199 1021-1042(1080)
77 2dgc_A Protein (GCN4); basic d 50.6 21 0.00073 26.0 4.4 24 175-198 32-55 (63)
78 3cvf_A Homer-3, homer protein 50.1 53 0.0018 25.4 6.7 7 190-196 65-71 (79)
79 1uii_A Geminin; human, DNA rep 49.9 52 0.0018 25.8 6.7 27 169-195 49-75 (83)
80 3u06_A Protein claret segregat 47.2 31 0.0011 33.2 6.2 41 159-199 17-57 (412)
81 1am9_A Srebp-1A, protein (ster 46.5 89 0.0031 23.4 9.5 29 156-184 47-75 (82)
82 2r2v_A GCN4 leucine zipper; co 46.5 29 0.00099 23.2 4.1 23 161-183 3-25 (34)
83 1hlo_A Protein (transcription 45.7 18 0.00062 26.9 3.4 18 177-194 61-78 (80)
84 3s4r_A Vimentin; alpha-helix, 45.4 1E+02 0.0036 23.8 9.3 28 171-198 54-81 (93)
85 2wuj_A Septum site-determining 45.2 22 0.00076 25.3 3.7 27 159-185 27-53 (57)
86 3ljm_A Coil Ser L9C; de novo d 44.8 39 0.0013 21.8 4.3 25 162-186 4-28 (31)
87 3ghg_A Fibrinogen alpha chain; 44.6 51 0.0018 33.6 7.4 48 152-199 103-150 (562)
88 2v71_A Nuclear distribution pr 44.5 56 0.0019 28.8 6.9 46 153-198 36-81 (189)
89 3mq9_A Bone marrow stromal ant 43.7 1.6E+02 0.0053 27.5 10.3 17 181-197 444-460 (471)
90 1p9i_A Cortexillin I/GCN4 hybr 43.0 29 0.001 22.3 3.5 22 165-186 5-26 (31)
91 3hnw_A Uncharacterized protein 42.9 97 0.0033 25.6 7.8 14 183-196 113-126 (138)
92 2wt7_A Proto-oncogene protein 41.9 93 0.0032 22.2 7.4 25 174-198 24-48 (63)
93 2xdj_A Uncharacterized protein 41.7 77 0.0026 24.3 6.5 38 159-196 6-43 (83)
94 3u1c_A Tropomyosin alpha-1 cha 41.5 1.2E+02 0.0042 23.5 10.0 52 146-197 17-68 (101)
95 3oja_A Leucine-rich immune mol 41.2 1.7E+02 0.0059 27.3 10.2 31 154-184 430-460 (487)
96 3ra3_B P2F; coiled coil domain 40.9 23 0.00079 22.4 2.8 23 170-192 4-26 (28)
97 2oa5_A Hypothetical protein BQ 39.9 16 0.00055 30.0 2.5 25 159-183 8-32 (110)
98 2zxx_A Geminin; coiled-coil, c 38.8 79 0.0027 24.5 6.1 40 157-197 26-65 (79)
99 3vkg_A Dynein heavy chain, cyt 38.8 1.2E+02 0.0042 36.7 10.4 65 134-198 2010-2074(3245)
100 1jcd_A Major outer membrane li 38.7 72 0.0025 22.8 5.5 31 167-197 5-35 (52)
101 4emc_A Monopolin complex subun 38.4 29 0.00098 30.9 4.1 35 166-200 20-54 (190)
102 3m48_A General control protein 38.2 31 0.0011 22.9 3.2 24 176-199 3-26 (33)
103 1a93_B MAX protein, coiled coi 37.9 50 0.0017 22.0 4.2 23 163-185 11-33 (34)
104 3he4_B Synzip5; heterodimeric 37.7 79 0.0027 21.9 5.3 17 157-173 8-24 (46)
105 2wt7_B Transcription factor MA 37.7 59 0.002 25.6 5.3 47 152-198 30-80 (90)
106 2oxj_A Hybrid alpha/beta pepti 37.6 51 0.0017 22.0 4.2 23 176-198 4-26 (34)
107 2wvr_A Geminin; DNA replicatio 37.4 72 0.0025 28.8 6.5 56 129-197 91-146 (209)
108 3qh9_A Liprin-beta-2; coiled-c 36.8 1E+02 0.0036 24.0 6.5 40 159-198 26-65 (81)
109 3nmd_A CGMP dependent protein 36.3 1.4E+02 0.0048 22.7 7.5 32 169-200 36-67 (72)
110 2dfs_A Myosin-5A; myosin-V, in 36.1 1.6E+02 0.0055 31.8 10.1 38 159-196 984-1021(1080)
111 2ve7_C Kinetochore protein NUF 35.9 58 0.002 29.3 5.8 61 134-201 116-176 (250)
112 1t6f_A Geminin; coiled-coil, c 35.7 76 0.0026 21.5 4.8 25 169-193 10-34 (37)
113 3o0z_A RHO-associated protein 35.3 1.7E+02 0.0059 25.4 8.4 52 147-198 26-80 (168)
114 1wlq_A Geminin; coiled-coil; 2 34.9 1E+02 0.0034 24.2 6.2 27 169-195 41-67 (83)
115 1l8d_A DNA double-strand break 34.7 1.5E+02 0.0051 22.5 7.4 38 160-197 65-102 (112)
116 1ci6_A Transcription factor AT 34.3 1.3E+02 0.0044 21.6 7.3 22 176-197 26-47 (63)
117 3w03_C DNA repair protein XRCC 33.5 1E+02 0.0035 27.1 6.8 38 159-196 145-182 (184)
118 3m91_A Proteasome-associated A 33.5 1E+02 0.0035 21.9 5.6 34 165-198 8-41 (51)
119 3oa7_A Head morphogenesis prot 33.0 1.1E+02 0.0037 27.6 6.9 45 158-202 29-73 (206)
120 4ath_A MITF, microphthalmia-as 32.3 1.2E+02 0.0042 23.5 6.4 25 162-186 52-76 (83)
121 3a7o_A Autophagy protein 16; c 32.3 1.5E+02 0.0051 22.8 6.6 44 157-200 30-73 (75)
122 3a2a_A Voltage-gated hydrogen 32.2 56 0.0019 24.0 4.1 21 180-200 32-52 (58)
123 1uii_A Geminin; human, DNA rep 32.0 1.2E+02 0.0043 23.6 6.3 28 172-199 45-72 (83)
124 1hwt_C Protein (heme activator 31.9 18 0.00061 26.0 1.5 22 157-178 56-77 (81)
125 3hnw_A Uncharacterized protein 31.7 2.2E+02 0.0075 23.5 9.4 18 161-178 77-94 (138)
126 1go4_E MAD1 (mitotic arrest de 31.2 83 0.0028 25.2 5.3 24 160-183 13-36 (100)
127 1wle_A Seryl-tRNA synthetase; 30.7 2.1E+02 0.0072 28.3 9.3 46 160-205 117-162 (501)
128 2aze_A Transcription factor DP 30.6 1.1E+02 0.0037 26.4 6.3 18 154-171 21-38 (155)
129 3s9g_A Protein hexim1; cyclin 30.6 2.2E+02 0.0074 23.1 8.3 30 159-195 65-94 (104)
130 2dq0_A Seryl-tRNA synthetase; 30.4 95 0.0033 30.1 6.7 48 161-208 71-118 (455)
131 2wg5_A General control protein 30.1 38 0.0013 26.8 3.2 28 167-194 8-35 (109)
132 3mq9_A Bone marrow stromal ant 30.0 1.1E+02 0.0038 28.5 6.9 38 161-198 431-468 (471)
133 2yy0_A C-MYC-binding protein; 29.9 72 0.0025 22.6 4.3 21 162-182 29-49 (53)
134 1kd8_B GABH BLL, GCN4 acid bas 29.4 86 0.0029 21.1 4.3 25 169-193 4-28 (36)
135 3a2a_A Voltage-gated hydrogen 29.3 1.7E+02 0.0058 21.5 6.3 24 171-194 16-39 (58)
136 1jnm_A Proto-oncogene C-JUN; B 29.0 1.3E+02 0.0044 21.3 5.6 24 175-198 24-47 (62)
137 3u06_A Protein claret segregat 28.7 1.5E+02 0.005 28.5 7.6 34 163-196 7-40 (412)
138 3ol1_A Vimentin; structural ge 28.6 1.5E+02 0.0051 23.7 6.5 22 161-182 22-43 (119)
139 1ses_A Seryl-tRNA synthetase; 28.2 89 0.0031 29.9 6.0 50 158-207 63-112 (421)
140 3coq_A Regulatory protein GAL4 28.2 55 0.0019 23.6 3.6 21 158-178 44-64 (89)
141 1l8d_A DNA double-strand break 28.0 1.4E+02 0.0047 22.8 6.1 42 160-201 4-45 (112)
142 2ve7_A Kinetochore protein HEC 27.8 98 0.0034 28.5 6.0 41 158-198 184-224 (315)
143 3oja_A Leucine-rich immune mol 27.7 1.9E+02 0.0065 27.0 8.1 31 169-199 431-461 (487)
144 3q0x_A Centriole protein; cent 27.0 1.4E+02 0.0049 26.9 6.8 55 138-198 163-217 (228)
145 1pyi_A Protein (pyrimidine pat 25.9 51 0.0017 24.3 3.1 20 158-177 47-66 (96)
146 1fxk_C Protein (prefoldin); ar 25.8 1.7E+02 0.0058 23.0 6.4 32 162-193 98-129 (133)
147 4dci_A Uncharacterized protein 25.8 2.3E+02 0.0077 24.1 7.4 35 156-190 26-60 (150)
148 1fxk_C Protein (prefoldin); ar 25.5 2E+02 0.0067 22.6 6.7 26 167-192 96-121 (133)
149 3qne_A Seryl-tRNA synthetase, 25.4 1.4E+02 0.0049 29.5 7.0 41 161-201 73-113 (485)
150 3a7p_A Autophagy protein 16; c 25.3 2.8E+02 0.0095 23.8 7.9 41 158-198 81-121 (152)
151 2v4h_A NF-kappa-B essential mo 25.0 2.1E+02 0.007 23.4 6.7 18 179-196 89-106 (110)
152 3vmx_A Voltage-gated hydrogen 25.0 1.9E+02 0.0064 20.5 7.4 24 176-199 21-44 (48)
153 4ati_A MITF, microphthalmia-as 25.0 44 0.0015 26.9 2.7 37 159-199 74-110 (118)
154 1t2k_D Cyclic-AMP-dependent tr 25.0 1.8E+02 0.0062 20.4 7.3 24 175-198 24-47 (61)
155 4b4t_K 26S protease regulatory 24.6 1.1E+02 0.0039 29.4 6.0 40 161-200 51-90 (428)
156 3w03_C DNA repair protein XRCC 23.9 1.1E+02 0.0037 26.9 5.2 25 161-185 154-178 (184)
157 3mq7_A Bone marrow stromal ant 23.7 1.3E+02 0.0045 25.0 5.3 30 167-196 72-101 (121)
158 1gk7_A Vimentin; intermediate 23.6 1.7E+02 0.0058 19.5 5.4 17 180-196 20-36 (39)
159 3lss_A Seryl-tRNA synthetase; 23.5 1.6E+02 0.0056 29.1 7.0 40 168-207 113-152 (484)
160 4abm_A Charged multivesicular 23.0 1.9E+02 0.0064 21.8 5.8 22 144-165 41-62 (79)
161 4dzn_A Coiled-coil peptide CC- 22.9 1.6E+02 0.0056 19.1 4.8 27 168-194 4-30 (33)
162 3lay_A Zinc resistance-associa 22.6 3.7E+02 0.012 23.1 8.8 13 134-146 69-81 (175)
163 1hlo_A Protein (transcription 22.5 51 0.0017 24.4 2.5 14 183-196 60-73 (80)
164 1lwu_C Fibrinogen gamma chain; 22.5 1.9E+02 0.0066 27.1 7.0 31 164-194 17-47 (323)
165 2fxo_A Myosin heavy chain, car 22.2 3E+02 0.01 21.9 8.6 39 160-198 84-122 (129)
166 1ykh_B RNA polymerase II holoe 22.2 1.9E+02 0.0066 23.5 6.2 37 162-198 88-124 (132)
167 4etp_A Kinesin-like protein KA 22.1 2.6E+02 0.0089 26.6 7.9 43 154-196 19-61 (403)
168 3c3f_A Alpha/beta peptide with 21.8 1.4E+02 0.0048 19.9 4.1 23 176-198 4-26 (34)
169 3efg_A Protein SLYX homolog; x 21.8 1.6E+02 0.0056 22.1 5.2 42 160-201 22-63 (78)
170 1yke_B RNA polymerase II holoe 21.2 2E+02 0.0068 24.1 6.2 37 162-198 88-124 (151)
171 2z5i_A TM, general control pro 21.1 2.2E+02 0.0075 19.9 5.5 34 164-197 10-43 (52)
172 2gkw_A TNF receptor-associated 21.0 1.5E+02 0.0053 24.7 5.5 32 161-192 2-33 (192)
173 4b4t_J 26S protease regulatory 20.9 1.6E+02 0.0054 28.4 6.2 39 161-199 27-65 (405)
174 3mud_A DNA repair protein XRCC 20.8 2.4E+02 0.0081 24.7 6.7 32 152-183 135-166 (175)
175 3plt_A Sphingolipid long chain 20.5 4.2E+02 0.014 24.0 8.6 57 141-198 96-156 (234)
176 4h22_A Leucine-rich repeat fli 20.1 2.5E+02 0.0085 22.7 6.2 36 160-195 38-73 (103)
No 1
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.49 E-value=1.3e-13 Score=101.44 Aligned_cols=60 Identities=35% Similarity=0.395 Sum_probs=57.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
||++|++|||+||++||+|||+|+.+||.++..|+.+|..|..++..|..|+..|++.|.
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999999999999999999999999873
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.44 E-value=5.8e-13 Score=98.84 Aligned_cols=62 Identities=31% Similarity=0.435 Sum_probs=59.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 137 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 137 ~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+||++|++|||+||++||+|||+|+.+||.++..|+.+|..|..++..|..|...|+..|..
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999988854
No 3
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.44 E-value=1.8e-13 Score=99.83 Aligned_cols=50 Identities=38% Similarity=0.500 Sum_probs=45.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLA 187 (298)
Q Consensus 138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ 187 (298)
|+++|+++||+||++||.|||+|+.+||.+|..|+.+|..|..++..|..
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999888776654
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.42 E-value=2.7e-13 Score=100.07 Aligned_cols=61 Identities=28% Similarity=0.363 Sum_probs=54.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
|+.+|..|||+||++||+|||+|+.+||.++..|+.+|..|..++..|..|+..|++.|..
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~~ 61 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVMN 61 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999999999999999999999999998853
No 5
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.20 E-value=3.9e-11 Score=89.27 Aligned_cols=60 Identities=25% Similarity=0.268 Sum_probs=52.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
|+.+++.+||.||++||+|||++..+|+.++..|+.+|..|..++..|..|++.|++.|.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677888999999999999999999999999999999999999999999999999998774
No 6
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.08 E-value=2.1e-10 Score=85.65 Aligned_cols=48 Identities=33% Similarity=0.274 Sum_probs=39.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 139 KRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVL 186 (298)
Q Consensus 139 R~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~ 186 (298)
..++..+||+||++||+||++|+.+||.++..|+.+|..|..++..|.
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445699999999999999999999999999999998876555443
No 7
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.78 E-value=4.5e-08 Score=77.53 Aligned_cols=63 Identities=24% Similarity=0.220 Sum_probs=57.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
+-..|..||.+||++||+++|..-.+++.++..|+.+|..|+.+|..|..|...|+..|....
T Consensus 15 ~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 455567799999999999999999999999999999999999999999999999999997643
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.77 E-value=2.3e-08 Score=77.70 Aligned_cols=61 Identities=25% Similarity=0.256 Sum_probs=55.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+-..|..||.+||++||+++|....+++.++..|+.+|..|+.+|..|..|+..|++.|..
T Consensus 15 ~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 15 EYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445577999999999999999999999999999999999999999999999999977643
No 9
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.77 E-value=3e-08 Score=75.77 Aligned_cols=57 Identities=23% Similarity=0.152 Sum_probs=44.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 140 RRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 140 ~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
.+|+..||.|++.+|.||++|+.+||.++..|+..+..|......|..++..|...+
T Consensus 10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999998777766544444444444444443
No 10
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=98.52 E-value=1.7e-07 Score=65.56 Aligned_cols=40 Identities=33% Similarity=0.445 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
|+|+.+||.+++.|+..|.+|.+++..|+.||+.|||-|.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 7899999999999999999999999999999999999885
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.24 E-value=1e-05 Score=64.56 Aligned_cols=65 Identities=22% Similarity=0.227 Sum_probs=58.9
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 135 ~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
...|..||-+|||.+|+.||.||.....+||..+..|..+...|...+..+..|-..+++.+..+
T Consensus 24 ~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 24 IRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677899999999999999999999999999999999999999999999999999999888654
No 12
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.18 E-value=4.6e-08 Score=80.20 Aligned_cols=59 Identities=27% Similarity=0.333 Sum_probs=45.9
Q ss_pred ChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 134 DPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 134 d~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
....|.+||.+|||.+|+.||.||.+...+||.++. .|+.+++.|..||..|+..+...
T Consensus 33 ~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~-------~L~~e~e~L~~En~~l~~E~~~l 91 (107)
T 3a5t_A 33 IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKA-------ELQQEVEKLASENASMKLELDAL 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TTSSTTTTTTSTTSHHHHTTTSS
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 456689999999999999999999998888887776 45555555667777777666543
No 13
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.18 E-value=0.002 Score=51.63 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 022379 135 PISKKRRRQLRNRDAAVRSRERKKMYVKDLEM 166 (298)
Q Consensus 135 ~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~ 166 (298)
...+..||..|||.||++||+||......|+.
T Consensus 59 ~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 59 QLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 34577799999999999999999998877653
No 14
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=90.89 E-value=0.02 Score=45.85 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHH
Q 022379 135 PISKKRRRQLRNRDAAVRSRERKKM 159 (298)
Q Consensus 135 ~e~KR~RRllRNReSAqrSR~RKK~ 159 (298)
.-.+..||.-|||.|||.||+||..
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKld 87 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKLE 87 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3457778999999999999999864
No 15
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=90.54 E-value=1.5 Score=32.54 Aligned_cols=44 Identities=27% Similarity=0.352 Sum_probs=28.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 141 RRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 141 RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+..-|||.|+++||.|=|..++....-. ..-..||..||--+..
T Consensus 4 ~kryknr~asrk~rakfkn~lqh~r~va--------------aaks~en~rlr~l~kq 47 (63)
T 2c9l_Y 4 IKRYKNRVAARKSRAKFKQLLQHYREVA--------------AAKSSENDRLRLLLKQ 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HhhcccchHHHHHHHH
Confidence 3456899999999999887655443322 2334566666655543
No 16
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=86.95 E-value=1.3 Score=31.83 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 166 MKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 166 ~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
..+..|..||..|+.++..|..+|..|+.+|.+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467789999999999999999999999999854
No 17
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=86.15 E-value=1.3 Score=33.31 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 170 YLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
.|+.++..|..++..|..+|..|+++|...+
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555666677777888999999997654
No 18
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=85.36 E-value=1.6 Score=35.63 Aligned_cols=38 Identities=26% Similarity=0.180 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHhcc
Q 022379 163 DLEMKSRYLESECRK--------------LGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 163 eLE~kvk~LE~EN~~--------------L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
.||.++..++.+|.+ |...|..|..||+.|+++-...+
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~ 92 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR 92 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356666666555543 44556778888888887765543
No 19
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=85.03 E-value=3.6 Score=31.07 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LR 193 (298)
..|.+||.....+..+|..|+.++..|..||..||
T Consensus 36 ~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 36 TQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34677888888888888888888888888887764
No 20
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=84.83 E-value=3.8 Score=34.22 Aligned_cols=40 Identities=20% Similarity=0.190 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
.+++|+.+++.|.++.+.....++.|..+|+.|..++...
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~ 111 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADK 111 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhc
Confidence 3889999999999999999999999999999998888653
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=84.23 E-value=6.4 Score=37.80 Aligned_cols=47 Identities=17% Similarity=0.085 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 153 SRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 153 SR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
..+.|++-.+.||.++..++.+....++++..+..||+.+++++...
T Consensus 531 ~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l 577 (597)
T 3oja_B 531 EADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQL 577 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33444555677778888888888888889999999999998888664
No 22
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=82.33 E-value=2.1 Score=32.08 Aligned_cols=33 Identities=39% Similarity=0.409 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRq 194 (298)
+.|=.-...|..|...|+++++.|+.||..||.
T Consensus 30 QQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 30 QQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 344444456777777888899999999999984
No 23
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=81.12 E-value=5.1 Score=31.29 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 167 kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
+...|..++..++.....|..||+.|++...
T Consensus 35 kN~~L~~e~~e~~~~~~~L~~en~qLk~E~~ 65 (81)
T 2jee_A 35 KNNSLSQEVQNAQHQREELERENNHLKEQQN 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3333333333333333446667777776654
No 24
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=80.43 E-value=2.9 Score=32.29 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
-.||..|+.+.. .+...+..|..+|+.|+++|..+.
T Consensus 51 ~~YI~~L~~~~~-------~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 51 TAYILSVQAEEQ-------KLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555554 555555667788888888887654
No 25
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=80.32 E-value=2.2 Score=28.85 Aligned_cols=30 Identities=33% Similarity=0.294 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAEN 189 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~EN 189 (298)
++..||.+|..|..++..|..++..|+..+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 356788888888888888877776666544
No 26
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=78.39 E-value=2.8 Score=31.54 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~L 192 (298)
--.||..|+.++..|+.+...|+.++..|..+-..|
T Consensus 45 Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 45 ATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357999999999999999999988888888776654
No 27
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=77.11 E-value=3.4 Score=27.65 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLH 183 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~ 183 (298)
++..||.||..|-.+|..|+.++.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~ 25 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVX 25 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHH
Confidence 356778888777777776654433
No 28
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=76.79 E-value=4 Score=31.09 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
-..||..|+.+...+..+ ...|..+|..|+++|..
T Consensus 45 A~~yI~~L~~~~~~l~~e-------~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 45 AKLHIKKLEDSDRKAVHQ-------IDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence 346777776666655544 55567778888888753
No 29
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=75.79 E-value=23 Score=30.84 Aligned_cols=51 Identities=24% Similarity=0.283 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 148 DAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 148 eSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+.=++.|.+-.+.+.+|+.++..|+.++.+++.....+..+|+.|...+..
T Consensus 79 ~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~ 129 (168)
T 3o0z_A 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNH 129 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667888888999999999999999999999999999999998888754
No 30
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=75.24 E-value=8.1 Score=31.79 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 153 SRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 153 SR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
-...-..||..|+.++..|+.++..-+...+....||..||.++...
T Consensus 34 l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 34 MKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566779999999999999999999888999999999999999754
No 31
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=74.73 E-value=6.8 Score=26.48 Aligned_cols=28 Identities=25% Similarity=0.182 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLA 187 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ 187 (298)
++..||.+|..|-.++..|+.++..|..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4667888888888777777666655544
No 32
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=73.90 E-value=3.9 Score=27.19 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCV 185 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L 185 (298)
+..||.||..|-.+|..|+..+..|
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3457777777666666665554433
No 33
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=72.54 E-value=8.1 Score=29.74 Aligned_cols=8 Identities=13% Similarity=0.156 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 022379 173 SECRKLGR 180 (298)
Q Consensus 173 ~EN~~L~~ 180 (298)
.+|..|..
T Consensus 73 ~~n~~L~~ 80 (88)
T 1nkp_A 73 KRREQLKH 80 (88)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 34
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=72.19 E-value=11 Score=28.64 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
.++.+||.|+...+..+.+|...|..-..+-..|+.++.
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~ 52 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIR 52 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999988877777775555444444444444443
No 35
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=71.93 E-value=10 Score=29.53 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
-+..||.|++.+-..+.-|+..+..|..+|..|.++.
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888776666555555555555555554444
No 36
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=71.42 E-value=8.6 Score=25.11 Aligned_cols=28 Identities=25% Similarity=0.184 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAE 188 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~E 188 (298)
+..||.++...+.+|-+|.+.+.+|..|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4567888888888888888877777665
No 37
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=70.30 E-value=6.3 Score=26.35 Aligned_cols=26 Identities=12% Similarity=0.024 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCV 185 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L 185 (298)
++..||.||..|-.+|..|+.++..|
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 35667777777777776665554433
No 38
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=69.95 E-value=4.5 Score=29.40 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 022379 176 RKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 176 ~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.+|-+|++.|..||..||+.|..
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~d 28 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELED 28 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHh
Confidence 46777888888888888888754
No 39
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=69.79 E-value=4.1 Score=28.68 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLL 182 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql 182 (298)
.+.|+..||.++..|+.++..|+..+
T Consensus 42 ~~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 42 STKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999998888887654
No 40
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=69.76 E-value=7.2 Score=29.51 Aligned_cols=52 Identities=23% Similarity=0.122 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 148 DAAVRSRERKKMYVKDLEMKSR----------YLES---ECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 148 eSAqrSR~RKK~YV~eLE~kvk----------~LE~---EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
.+-++-|.+=..++..|-.-|- .|.. =+..|+.+++.|..||..|+..++..
T Consensus 12 ~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 12 AIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444566666655431 2222 24567778888888888888877653
No 41
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=68.78 E-value=11 Score=26.32 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLL 182 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql 182 (298)
....+||.++..|+.||+-|++.+
T Consensus 17 ~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Confidence 345789999999999999887765
No 42
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=68.06 E-value=36 Score=26.55 Aligned_cols=54 Identities=20% Similarity=0.180 Sum_probs=35.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 143 QLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 143 llRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
-.|-|+.++.-=.--...+..||.+...|..++..|..++..|..--..+...+
T Consensus 27 arrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~ 80 (87)
T 1hjb_A 27 VRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPL 80 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHH
Confidence 335555555544555667888888888888888888888888776555555544
No 43
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=67.35 E-value=11 Score=28.61 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022379 175 CRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 175 N~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
+..|+.+...+..|+..|+.+..
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~ 71 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666655543
No 44
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=67.30 E-value=11 Score=25.11 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCV 185 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L 185 (298)
+..||.||..|-.+|..|+.++..|
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4567777777777776665554433
No 45
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=66.88 E-value=4 Score=31.68 Aligned_cols=30 Identities=20% Similarity=0.103 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 168 SRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 168 vk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
|..|..++.+|.+++.+|..||.-||+-..
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456677777788888888899999987653
No 46
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=66.10 E-value=7.9 Score=25.88 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCV 185 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L 185 (298)
.+..||.+|..|-.+|..|..++..|
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL 27 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARL 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 35667888887777777776555444
No 47
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=66.05 E-value=12 Score=24.92 Aligned_cols=25 Identities=20% Similarity=-0.019 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCV 185 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L 185 (298)
+..||.||..|-.++..|..++..|
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4668888888777777776555443
No 48
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=64.26 E-value=26 Score=24.95 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
.+.+|..++..|...|.+|..-+.....|-..|+.+|.+.
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456777888888888888888888888888888887654
No 49
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=64.25 E-value=9 Score=25.62 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCV 185 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L 185 (298)
++..||.||..|-.++..|...+..|
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHH
Confidence 35567777777766666665554433
No 50
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=64.11 E-value=10 Score=33.93 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+..|+.++..|+.++..++.++..+.+|-..+|.+..+
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~r 98 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQ 98 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666666666666666666666666544
No 51
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=62.95 E-value=48 Score=25.26 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=30.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 143 QLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVL 186 (298)
Q Consensus 143 llRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~ 186 (298)
--|.|+.++.-=.--...+..|+.+...|..++..|...+..|.
T Consensus 27 akrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr 70 (78)
T 1gu4_A 27 VRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 70 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556555555555566778888888888888888887777664
No 52
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=62.66 E-value=22 Score=24.97 Aligned_cols=34 Identities=26% Similarity=0.262 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 163 eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
+||.+|..|+.-...|+-++..|.+|...-.+.|
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~Kl 35 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKM 35 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999998889888888888876555444
No 53
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=62.10 E-value=10 Score=25.31 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHC 184 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~ 184 (298)
+..||.||..|-.+|..|...+..
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~R 26 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELAR 26 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHH
Confidence 456777777766666666554443
No 54
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=61.65 E-value=0.12 Score=41.28 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=19.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q 022379 137 SKKRRRQLRNRDAAVRSRERKKM 159 (298)
Q Consensus 137 ~KR~RRllRNReSAqrSR~RKK~ 159 (298)
.+..||.-|||.|||.||+||..
T Consensus 65 IrdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 65 IRDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp HHHHHHHSCSCCCCCCCSCCCCS
T ss_pred HHHHHHhhhhHHHHHHcchhhcc
Confidence 35567888999999999999853
No 55
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=61.32 E-value=8.7 Score=29.81 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022379 158 KMYVKDLEMKSRYLESECRKLGR 180 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ 180 (298)
|+.+.+|+.++..|+.||.-|+.
T Consensus 21 Ke~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 21 KEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888887754
No 56
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=61.20 E-value=11 Score=26.92 Aligned_cols=28 Identities=14% Similarity=0.106 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022379 174 ECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (298)
Q Consensus 174 EN~~L~~ql~~L~~ENq~LRqqL~~~~a 201 (298)
....|..++..|..||..|+.++.....
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~ 50 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKD 50 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888999999999999876543
No 57
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=60.88 E-value=9.2 Score=35.30 Aligned_cols=43 Identities=19% Similarity=0.122 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
...+.+|+.++..|+.+|..|...+..+..|...|+.++.+.+
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3345667777777777777777777777777777777776643
No 58
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.86 E-value=9.7 Score=29.16 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCV 185 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L 185 (298)
|...+.+||.++...+.++++|+.++..+
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44446666666666666666555555443
No 59
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=60.44 E-value=59 Score=25.40 Aligned_cols=50 Identities=16% Similarity=0.157 Sum_probs=27.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 143 QLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (298)
Q Consensus 143 llRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~L 192 (298)
-|+.+++=++-=.+-|.-...++.+++..+..|..|...+..+..+-..|
T Consensus 22 EIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 22 EVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445566666666666666666666655555544
No 60
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=60.05 E-value=3.7 Score=36.99 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Q 022379 163 DLEMKSRYLESECRKLGR---LLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 163 eLE~kvk~LE~EN~~L~~---ql~~L~~ENq~LRqqL~~~ 199 (298)
.|..+.+.|.+||.+|+. ++..+..||.+||..|...
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~~ 62 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDIT 62 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 444555666677666653 4557788999999988654
No 61
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=58.61 E-value=81 Score=27.10 Aligned_cols=38 Identities=18% Similarity=0.005 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
++.|-.++..|.-++..+..++..|..||..|-+++..
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555567777888889999999999999888754
No 62
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=58.21 E-value=20 Score=23.95 Aligned_cols=28 Identities=7% Similarity=0.050 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 171 LESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 171 LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+..+|+..+..+..|..+|..|.+|+..
T Consensus 5 mRrKn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 4566777777788888888888877753
No 63
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=58.09 E-value=15 Score=27.65 Aligned_cols=31 Identities=32% Similarity=0.352 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLA 187 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ 187 (298)
|.+.+.+||..+..-..++++|+.++..+..
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qs 53 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLHKCQS 53 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888888887777777777766665543
No 64
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=58.02 E-value=31 Score=27.73 Aligned_cols=26 Identities=23% Similarity=0.109 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Q 022379 176 RKLGRLLHCVLAENQSLRFSLQKGNA 201 (298)
Q Consensus 176 ~~L~~ql~~L~~ENq~LRqqL~~~~a 201 (298)
++.++.+..|+.|+..||..+.....
T Consensus 71 ~~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 71 QRLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678889999999999999987654
No 65
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=57.99 E-value=35 Score=23.90 Aligned_cols=37 Identities=27% Similarity=0.283 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 022379 160 YVKDLEMKSRYLESECRKLGRL-------LHCVLAENQSLRFSL 196 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~q-------l~~L~~ENq~LRqqL 196 (298)
.+..||.++..|+.+|..|+++ +.-|..|-..||..+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 3566777888887777776543 445677777777654
No 66
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=57.82 E-value=11 Score=34.88 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 156 RKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (298)
Q Consensus 156 RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqq 195 (298)
.++..+..|+.+...|..+.+++++++..|+.|+..|++-
T Consensus 58 eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sP 97 (251)
T 3m9b_A 58 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQP 97 (251)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3567789999999999999999999999999999999865
No 67
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=57.52 E-value=14 Score=24.15 Aligned_cols=28 Identities=25% Similarity=0.196 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAEN 189 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~EN 189 (298)
..||..++.|..-.++|++++..|..--
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3588888888888888888888776543
No 68
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=56.39 E-value=6.1 Score=28.08 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESECRKL 178 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L 178 (298)
++.|+..||.++..|+..+..|
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999888776655
No 69
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=55.64 E-value=41 Score=25.76 Aligned_cols=43 Identities=23% Similarity=0.173 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
+...+..|+.+...++.+...|..++..+..+-..|+..|...
T Consensus 68 ~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 68 KDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777777778888888888888888888888877653
No 70
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=55.25 E-value=8.2 Score=31.76 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 176 RKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 176 ~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
.+|..+++.|+.||..||++|+..
T Consensus 11 EeLaaeL~kLqmENK~LKkkl~~~ 34 (110)
T 2oa5_A 11 EEMVKEVERLKLENKTLKQKVKSS 34 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467778888899999999999753
No 71
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=55.08 E-value=43 Score=25.25 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+...+..|+.+...++.+...|..++..+..+-..|+..|+.
T Consensus 63 ~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 63 KDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777777777888888888888888888888877753
No 72
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=54.69 E-value=22 Score=27.39 Aligned_cols=35 Identities=31% Similarity=0.305 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
++||.+|..|+.-...|+-++..|.+|...-.+.|
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KL 37 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYESMQQKL 37 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999998888888888888877775554444
No 73
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=54.20 E-value=43 Score=25.45 Aligned_cols=35 Identities=17% Similarity=0.374 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqq 195 (298)
++++|.+...|+.+...|+.+++..+.+-..++..
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~E 43 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSN 43 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444333333333
No 74
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=53.59 E-value=57 Score=31.17 Aligned_cols=23 Identities=26% Similarity=0.188 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022379 173 SECRKLGRLLHCVLAENQSLRFS 195 (298)
Q Consensus 173 ~EN~~L~~ql~~L~~ENq~LRqq 195 (298)
+++.+++++++.-...-..|+++
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e 566 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQE 566 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhhhHHHHHHHH
Confidence 33333333333333333333333
No 75
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=52.26 E-value=19 Score=34.39 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
.+|+.+++.++.++.++.+++..-..+-..|-.++
T Consensus 20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 20 AALKEKIKDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444343334443343
No 76
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=51.76 E-value=69 Score=34.51 Aligned_cols=22 Identities=14% Similarity=0.096 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 022379 178 LGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 178 L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
|+.++..|..||+.|++++...
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l 1042 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEEL 1042 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667888888888877553
No 77
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=50.63 E-value=21 Score=25.98 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 175 CRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 175 N~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+..|..++..|..+|..|+.++..
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~ 55 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVAR 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555543
No 78
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=50.12 E-value=53 Score=25.35 Aligned_cols=7 Identities=43% Similarity=0.458 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 022379 190 QSLRFSL 196 (298)
Q Consensus 190 q~LRqqL 196 (298)
..||+.|
T Consensus 65 ~elRqgL 71 (79)
T 3cvf_A 65 SELREGL 71 (79)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 79
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=49.93 E-value=52 Score=25.79 Aligned_cols=27 Identities=19% Similarity=0.118 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 169 RYLESECRKLGRLLHCVLAENQSLRFS 195 (298)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~ENq~LRqq 195 (298)
+.|..++..|+..+..|..+|..||.-
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555543
No 80
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.19 E-value=31 Score=33.18 Aligned_cols=41 Identities=12% Similarity=-0.014 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
+..++|+.+++.++.++..+.+++.....+...|-.+++..
T Consensus 17 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l 57 (412)
T 3u06_A 17 QRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDL 57 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456666666677777777766666666666666666543
No 81
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=46.55 E-value=89 Score=23.36 Aligned_cols=29 Identities=21% Similarity=0.264 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 156 RKKMYVKDLEMKSRYLESECRKLGRLLHC 184 (298)
Q Consensus 156 RKK~YV~eLE~kvk~LE~EN~~L~~ql~~ 184 (298)
+--.||..|+.++..|+.++..|+..++.
T Consensus 47 ~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 47 KAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34579999999999999999888877654
No 82
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=46.53 E-value=29 Score=23.17 Aligned_cols=23 Identities=17% Similarity=0.063 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLH 183 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~ 183 (298)
+..||.||..|-.++..|..++.
T Consensus 3 MnQledKvEel~~~~~~l~nEv~ 25 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELA 25 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHH
Confidence 45677777766666655544443
No 83
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.66 E-value=18 Score=26.92 Aligned_cols=18 Identities=17% Similarity=0.110 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022379 177 KLGRLLHCVLAENQSLRF 194 (298)
Q Consensus 177 ~L~~ql~~L~~ENq~LRq 194 (298)
.|+.+++.|..++..|++
T Consensus 61 ~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 61 YMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444444444444444443
No 84
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=45.40 E-value=1e+02 Score=23.80 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 171 LESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 171 LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
++.++..|+.++.++..+|..|..++..
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dn 81 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDN 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666666666655555443
No 85
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=45.24 E-value=22 Score=25.30 Aligned_cols=27 Identities=4% Similarity=0.064 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCV 185 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L 185 (298)
+|+..+...+..|..+|..|+.++..|
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555444433
No 86
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=44.79 E-value=39 Score=21.77 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVL 186 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~ 186 (298)
+-||.++..|+...+.|.++++.|.
T Consensus 4 ealekkcaalesklqalekkleale 28 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEALE 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888888888777654
No 87
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=44.65 E-value=51 Score=33.56 Aligned_cols=48 Identities=6% Similarity=0.049 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 152 RSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 152 rSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
.....+.+|-++||.++..|+.++..-..+++.|+.--..++..++++
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666678888888888775544455666665555555555553
No 88
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=44.45 E-value=56 Score=28.82 Aligned_cols=46 Identities=20% Similarity=0.124 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 153 SRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 153 SR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
...=-+++=.+||..+..++..+..|+.++..|..|...+|..+..
T Consensus 36 FqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~ 81 (189)
T 2v71_A 36 FQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEH 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666777766666666666666665543
No 89
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=43.75 E-value=1.6e+02 Score=27.50 Aligned_cols=17 Identities=24% Similarity=0.196 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022379 181 LLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 181 ql~~L~~ENq~LRqqL~ 197 (298)
+++.|..|-..|.++|+
T Consensus 444 ~~~~~~~~~~~~~~~~~ 460 (471)
T 3mq9_A 444 KVEELEGEITTLNHKLQ 460 (471)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 90
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=43.02 E-value=29 Score=22.34 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022379 165 EMKSRYLESECRKLGRLLHCVL 186 (298)
Q Consensus 165 E~kvk~LE~EN~~L~~ql~~L~ 186 (298)
-.-+..|+.+|.+|+.+++.|.
T Consensus 5 nallasleaenkqlkakveell 26 (31)
T 1p9i_A 5 NALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666666665555443
No 91
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=42.94 E-value=97 Score=25.63 Aligned_cols=14 Identities=7% Similarity=0.048 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 022379 183 HCVLAENQSLRFSL 196 (298)
Q Consensus 183 ~~L~~ENq~LRqqL 196 (298)
..|..+|..|..++
T Consensus 113 ~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 113 KELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444333
No 92
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=41.90 E-value=93 Score=22.22 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 174 ECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 174 EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.+..|+.++..|..+|..|+.++..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888754
No 93
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=41.70 E-value=77 Score=24.35 Aligned_cols=38 Identities=24% Similarity=0.086 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
..|..||..+.....-...|..+++.+..|...||-++
T Consensus 6 ~rv~~LEr~~~~~~q~~~~Lq~Ql~~Lq~Ev~~LRGqi 43 (83)
T 2xdj_A 6 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQI 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhHH
No 94
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=41.52 E-value=1.2e+02 Score=23.53 Aligned_cols=52 Identities=19% Similarity=0.245 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 146 NRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 146 NReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
-.+.|..--..-..-+..+|.+...++.++..|+++++.+..+--.+..+|.
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555566666677777777777777777766666555555553
No 95
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=41.15 E-value=1.7e+02 Score=27.31 Aligned_cols=31 Identities=16% Similarity=0.033 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 154 RERKKMYVKDLEMKSRYLESECRKLGRLLHC 184 (298)
Q Consensus 154 R~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~ 184 (298)
|.|.+.+++..-.+.+.+.+++.+++..++.
T Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (487)
T 3oja_A 430 QNNAIRDWDMYQHKETQLAEENARLKKLNGE 460 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhhhhhhhhHHHHHHHHhhhhhhhhhh
Confidence 3334444444444444444444444444433
No 96
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=40.88 E-value=23 Score=22.36 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022379 170 YLESECRKLGRLLHCVLAENQSL 192 (298)
Q Consensus 170 ~LE~EN~~L~~ql~~L~~ENq~L 192 (298)
.|.+.|.+|++.+..|.-|-..|
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 34444555555555544444433
No 97
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=39.89 E-value=16 Score=30.01 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLH 183 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~ 183 (298)
.-+++|..++..|+-||..|++++.
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3478999999999999999999885
No 98
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=38.84 E-value=79 Score=24.45 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
+++--+.|+ ..+.|..++.+++..+..|..||..|+.-+.
T Consensus 26 R~AL~eaL~-EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 26 RKALYEALK-ENEKLHKEIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344334443 2344555666666666677777776655443
No 99
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.81 E-value=1.2e+02 Score=36.74 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 134 DPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 134 d~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.|..++.+...++-..|+..=+.+++-+.+||.++..|+.+..++..+.+.|+.|-.....+|.+
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~r 2074 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDR 2074 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566777777777777778888888888888888877766666666666655555555543
No 100
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=38.67 E-value=72 Score=22.77 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 167 KSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 167 kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
++..|..+.+.|..++.+|..+-..||..++
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555443
No 101
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=38.37 E-value=29 Score=30.92 Aligned_cols=35 Identities=20% Similarity=0.097 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 166 MKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 166 ~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
.-|..|..||..|..+++....|+..|+.+|....
T Consensus 20 ~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~ 54 (190)
T 4emc_A 20 LLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLN 54 (190)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777777777765543
No 102
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=38.19 E-value=31 Score=22.87 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 176 RKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 176 ~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
.+|..++..|..+|..|.+.+.+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHH
Confidence 356677777777777777776554
No 103
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=37.89 E-value=50 Score=21.99 Aligned_cols=23 Identities=9% Similarity=0.066 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 022379 163 DLEMKSRYLESECRKLGRLLHCV 185 (298)
Q Consensus 163 eLE~kvk~LE~EN~~L~~ql~~L 185 (298)
..-..+.+|+.+|..|..++..|
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHHHHhc
Confidence 34455667777777777776554
No 104
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=37.72 E-value=79 Score=21.86 Aligned_cols=17 Identities=29% Similarity=0.511 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLES 173 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~ 173 (298)
-|.|+++||.+...|..
T Consensus 8 lknyiqeleernaelkn 24 (46)
T 3he4_B 8 LKNYIQELEERNAELKN 24 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHh
Confidence 36788888887765543
No 105
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=37.67 E-value=59 Score=25.63 Aligned_cols=47 Identities=19% Similarity=0.171 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 152 RSRERKKMYVKDLEMK----SRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 152 rSR~RKK~YV~eLE~k----vk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+-|-|-+.|-..=-.+ ...|+.++..|+.+++.|..||..+...+..
T Consensus 30 RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~ 80 (90)
T 2wt7_B 30 RRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDA 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667776543332 3579999999999999999999999887754
No 106
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=37.59 E-value=51 Score=21.98 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 022379 176 RKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 176 ~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
++|..++..|..+|..|..++.+
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~r 26 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHH
Confidence 34555555555555555555443
No 107
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=37.45 E-value=72 Score=28.75 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=30.7
Q ss_pred CCCCCChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 129 NDNADDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 129 ~~~~Dd~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
.+++.+..+|...- +|+++--+-|+ +.+.|..++..|+..+..|..||..|+.-..
T Consensus 91 ~e~Pse~YWk~lAE------------~RR~AL~eaLe-EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 91 KENPSSQYWKEVAE------------KRRKALYEALK-ENEKLHKEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp CCSCCTTHHHHHHH------------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHH------------HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666532 12333333333 3445666666666666677777777765543
No 108
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=36.77 E-value=1e+02 Score=23.98 Aligned_cols=40 Identities=23% Similarity=0.203 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+-|.+|--+|..|+.|-.+...++..-..|-+.|+++|..
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~ 65 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVAL 65 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3456666677777777666677777777777777777743
No 109
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.31 E-value=1.4e+02 Score=22.69 Aligned_cols=32 Identities=22% Similarity=-0.010 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 169 RYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
+..+..+..|..++.....+.+.|+.+|-+.+
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455666666667777788888886654
No 110
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=36.09 E-value=1.6e+02 Score=31.76 Aligned_cols=38 Identities=11% Similarity=-0.017 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
.-+..|+.++..++.++.++.+....++..++.++..|
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L 1021 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444333
No 111
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=35.88 E-value=58 Score=29.28 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=34.0
Q ss_pred ChhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022379 134 DPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (298)
Q Consensus 134 d~e~KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a 201 (298)
.|..+|.+|.+.-=.-=.+.|+-+..-.. .+-.+...+..+++++..||+.+.++|.+...
T Consensus 116 kP~~~Rt~~iLSalINF~~FRE~~~~~~~-------e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~ 176 (250)
T 2ve7_C 116 CPKAKRTSRFLSGIINFIHFREACRETYM-------EFLWQYKSSADKMQQLNAAHQEALMKLERLEK 176 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHTTHHHHHHHHHHHHHHHHHHSCC----
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888876654444455555444332 33333445666666677777777777766543
No 112
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=35.69 E-value=76 Score=21.47 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 169 RYLESECRKLGRLLHCVLAENQSLR 193 (298)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~ENq~LR 193 (298)
..|..++.+-.+++..|..||..|+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4455555566777888888888875
No 113
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=35.30 E-value=1.7e+02 Score=25.38 Aligned_cols=52 Identities=25% Similarity=0.224 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 147 RDAAVRSRERKKMY---VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 147 ReSAqrSR~RKK~Y---V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
=++|.+.|+---++ +..+|..++.|...+..|...-..|..++..|..+|..
T Consensus 26 sE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 26 SDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555554433332 35566666666666666666666666666666666643
No 114
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=34.87 E-value=1e+02 Score=24.18 Aligned_cols=27 Identities=19% Similarity=0.115 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 169 RYLESECRKLGRLLHCVLAENQSLRFS 195 (298)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~ENq~LRqq 195 (298)
..|..++..++..+..|..||..|+.-
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666667777666543
No 115
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=34.74 E-value=1.5e+02 Score=22.54 Aligned_cols=38 Identities=8% Similarity=0.042 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
.+...+.++..+..+...|..++..+..+-..|+.++.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555566666666666666666666654
No 116
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=34.29 E-value=1.3e+02 Score=21.62 Aligned_cols=22 Identities=14% Similarity=0.061 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022379 176 RKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 176 ~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
..|..+++.|..+|..|+.++.
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 117
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=33.54 E-value=1e+02 Score=27.08 Aligned_cols=38 Identities=5% Similarity=-0.112 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
+++.-+=.++..|+.+|.+|++..+.|..|-.....|+
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555566555555555555555555444444443
No 118
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=33.50 E-value=1e+02 Score=21.87 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 165 EMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 165 E~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
|.++..|..++..|..+...|...-+.-|++|..
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~ 41 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLA 41 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555444444555443
No 119
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=32.96 E-value=1.1e+02 Score=27.59 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAY 202 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~ 202 (298)
-+-++.||+.....-.+.+.|......+++||..||..|.+..+.
T Consensus 29 ~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 29 TEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 356788899988888899999999999999999999999997655
No 120
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=32.34 E-value=1.2e+02 Score=23.51 Aligned_cols=25 Identities=32% Similarity=0.294 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVL 186 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~ 186 (298)
.+.|.+.+.|+..|..|-.+++.|.
T Consensus 52 ~e~e~r~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 52 KDLENRQKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3445555555555555555554444
No 121
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=32.31 E-value=1.5e+02 Score=22.77 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 157 KKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
|...+..|+..++--.+...+|.-.+-.+--||.-|+++|+..+
T Consensus 30 Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 30 KEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 44455666655544333444666667788899999999997654
No 122
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=32.24 E-value=56 Score=24.04 Aligned_cols=21 Identities=14% Similarity=-0.116 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcc
Q 022379 180 RLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 180 ~ql~~L~~ENq~LRqqL~~~~ 200 (298)
.+...-..|+.+|+.-|..++
T Consensus 32 ~~c~e~eQEieRL~~LLkqHg 52 (58)
T 3a2a_A 32 FSCSEKEQEIERLNKLLRQHG 52 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 333333556666666665543
No 123
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=32.04 E-value=1.2e+02 Score=23.62 Aligned_cols=28 Identities=18% Similarity=-0.006 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 172 ESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 172 E~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
=.||..|..++.++..|+..|+..+...
T Consensus 45 L~EN~~Lh~~ie~l~eEi~~lk~en~eL 72 (83)
T 1uii_A 45 LKENEKLHKEIEQKDNEIARLKKENKEL 72 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3477888888888888888888777553
No 124
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=31.89 E-value=18 Score=25.99 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022379 157 KKMYVKDLEMKSRYLESECRKL 178 (298)
Q Consensus 157 KK~YV~eLE~kvk~LE~EN~~L 178 (298)
++.|+..|+.++..||.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 5679999999999998776655
No 125
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=31.65 E-value=2.2e+02 Score=23.48 Aligned_cols=18 Identities=17% Similarity=0.219 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKL 178 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L 178 (298)
...|+..+..+..++..|
T Consensus 77 ~~~L~~~l~~~~kE~~~l 94 (138)
T 3hnw_A 77 ADSLSLDIENKDKEIYDL 94 (138)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444443333
No 126
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=31.18 E-value=83 Score=25.23 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLH 183 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~ 183 (298)
-+..|..++..|+.+|.+|.+++.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~ 36 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKR 36 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666654433
No 127
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=30.67 E-value=2.1e+02 Score=28.26 Aligned_cols=46 Identities=9% Similarity=-0.042 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCc
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGAS 205 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g~~ 205 (298)
-...|-.+++.+..+...|..++..+..+-..+...|.+.-.-.++
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~~vP 162 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVP 162 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 3445556666666666666666666666655555555554333333
No 128
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=30.64 E-value=1.1e+02 Score=26.39 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022379 154 RERKKMYVKDLEMKSRYL 171 (298)
Q Consensus 154 R~RKK~YV~eLE~kvk~L 171 (298)
=++|++|+++|..+...+
T Consensus 21 I~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 21 IKQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367888888888765543
No 129
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=30.58 E-value=2.2e+02 Score=23.12 Aligned_cols=30 Identities=33% Similarity=0.404 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqq 195 (298)
..|.+|+.++..|..+|+.| ..||..-+++
T Consensus 65 ~~v~eLe~everL~~ENq~L-------~~e~~~~~~~ 94 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQL-------LTENELHRQQ 94 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHH-------HHHHHhhccc
Confidence 45566666666666666555 5666666654
No 130
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=30.40 E-value=95 Score=30.12 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcccc
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLTK 208 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g~~~~~ 208 (298)
...|-.+++.+..+...|..++..+..+-..+...|.+.-.-.++.+.
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP~g~ 118 (455)
T 2dq0_A 71 VDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGK 118 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCC
Confidence 445566666666677777777766666666666666665444444443
No 131
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=30.09 E-value=38 Score=26.82 Aligned_cols=28 Identities=21% Similarity=0.116 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 167 KSRYLESECRKLGRLLHCVLAENQSLRF 194 (298)
Q Consensus 167 kvk~LE~EN~~L~~ql~~L~~ENq~LRq 194 (298)
+.++|+.+...|++++..+..|...|++
T Consensus 8 ~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 8 RMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566777777777777777777777754
No 132
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=30.04 E-value=1.1e+02 Score=28.54 Aligned_cols=38 Identities=8% Similarity=0.093 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
...||.++.+-+..+++|..++..|..+-+.++.++..
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 431 MASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666555555556666665555555555555543
No 133
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=29.88 E-value=72 Score=22.56 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLL 182 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql 182 (298)
.+|..++..|..++.+|+.++
T Consensus 29 ~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 29 AEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544
No 134
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=29.42 E-value=86 Score=21.13 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 169 RYLESECRKLGRLLHCVLAENQSLR 193 (298)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~ENq~LR 193 (298)
.+|+....+|......|..|-.+||
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3344333344333333333333333
No 135
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=29.28 E-value=1.7e+02 Score=21.48 Aligned_cols=24 Identities=8% Similarity=-0.042 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 171 LESECRKLGRLLHCVLAENQSLRF 194 (298)
Q Consensus 171 LE~EN~~L~~ql~~L~~ENq~LRq 194 (298)
|.+.|.+|-.+++.|...|..--|
T Consensus 16 LKq~n~~L~~kv~~Le~~c~e~eQ 39 (58)
T 3a2a_A 16 LKQMNVQLAAKIQHLEFSCSEKEQ 39 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 136
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=28.95 E-value=1.3e+02 Score=21.30 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 175 CRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 175 N~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+..|..++..|..+|..|+.++..
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~ 47 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANM 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666644
No 137
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=28.67 E-value=1.5e+02 Score=28.51 Aligned_cols=34 Identities=21% Similarity=0.083 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 163 DLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 163 eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
.|+.++..+.+++.+|+++++.+..|+..++++|
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444
No 138
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=28.59 E-value=1.5e+02 Score=23.67 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLL 182 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql 182 (298)
+.+|-.++..+..++.+|.-++
T Consensus 22 I~~LR~qid~~~~e~a~l~lel 43 (119)
T 3ol1_A 22 MRELRRQVDQLTNDKARVEVER 43 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 139
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=28.25 E-value=89 Score=29.91 Aligned_cols=50 Identities=18% Similarity=0.119 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccc
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLT 207 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g~~~~ 207 (298)
++-...|-.+++.+..+...|..++..+..+-..+...|.+.-...++.+
T Consensus 63 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g 112 (421)
T 1ses_A 63 PEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVG 112 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCSS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 34455666666667777777777776666666666666655444334433
No 140
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=28.21 E-value=55 Score=23.61 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 022379 158 KMYVKDLEMKSRYLESECRKL 178 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L 178 (298)
+.|+..||.++..||.....|
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l 64 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLI 64 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999888777665
No 141
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=28.02 E-value=1.4e+02 Score=22.75 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a 201 (298)
.+.+++.+...+..+...|+.....+..+-..|+..+.....
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~ 45 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKK 45 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456666666666667677766666777777777777666544
No 142
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=27.81 E-value=98 Score=28.55 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
.+.++.|+.+.+.|++|+.+|+++.+.+...|..-+.+|++
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk 224 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKANAERLKRLQK 224 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 45678888888888888888877777776666555444443
No 143
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.69 E-value=1.9e+02 Score=27.02 Aligned_cols=31 Identities=10% Similarity=-0.068 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 169 RYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 169 k~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
..+++.....+++++.+..||..|+..+...
T Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 431 NNAIRDWDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhhhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 3344455566777888888888888777653
No 144
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=26.96 E-value=1.4e+02 Score=26.88 Aligned_cols=55 Identities=16% Similarity=0.045 Sum_probs=41.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 138 KKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 138 KR~RRllRNReSAqrSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
...|+-+..|-.+-+ ..+..|+.+++....|++.+..++.+++..-..||.+..+
T Consensus 163 e~Ik~yLa~R~~~lK------~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 163 SVVKQFLAFRLSEVK------GTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555443 3457889999999999999999999999999999988755
No 145
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=25.86 E-value=51 Score=24.29 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 022379 158 KMYVKDLEMKSRYLESECRK 177 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~ 177 (298)
+.|+..||.++..||....+
T Consensus 47 ~~~~~~Le~rl~~le~~l~~ 66 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKE 66 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45888999988887755443
No 146
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.82 E-value=1.7e+02 Score=22.97 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLR 193 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LR 193 (298)
+.|+..+..++.+...++.++..+..+-+.+.
T Consensus 98 ~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 98 NELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555444443
No 147
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=25.75 E-value=2.3e+02 Score=24.08 Aligned_cols=35 Identities=9% Similarity=0.049 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 156 RKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQ 190 (298)
Q Consensus 156 RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq 190 (298)
.|..-...|+..+..++.++++|..+...+.+|.+
T Consensus 26 ~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~ 60 (150)
T 4dci_A 26 WKEEAEREISNGIANADQQLAQLEQEGQTVVDQVR 60 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556677777777777777777776666665554
No 148
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=25.52 E-value=2e+02 Score=22.60 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 167 KSRYLESECRKLGRLLHCVLAENQSL 192 (298)
Q Consensus 167 kvk~LE~EN~~L~~ql~~L~~ENq~L 192 (298)
|++.++.....|.+++..+..+-..+
T Consensus 96 r~~~l~~~~~~l~~~l~~l~~~i~~~ 121 (133)
T 1fxk_C 96 QKNELESTLQKMGENLRAITDIMMKL 121 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 149
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.45 E-value=1.4e+02 Score=29.49 Aligned_cols=41 Identities=15% Similarity=-0.062 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a 201 (298)
.+.|-.+++.+..+...|..++..+..+-..+...|.+.-.
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~ 113 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVH 113 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 45566666677777777777777666666666666655433
No 150
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=25.31 E-value=2.8e+02 Score=23.77 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 158 KMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 158 K~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+..+.+|+..++.-...+..++..+..|..++..+.+++.+
T Consensus 81 ~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~k 121 (152)
T 3a7p_A 81 EQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSD 121 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444433333444444444444444444444443
No 151
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=25.05 E-value=2.1e+02 Score=23.44 Aligned_cols=18 Identities=6% Similarity=-0.033 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 022379 179 GRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 179 ~~ql~~L~~ENq~LRqqL 196 (298)
....+.|..++..|..++
T Consensus 89 ~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 89 VEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 152
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=25.01 E-value=1.9e+02 Score=20.55 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 176 RKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 176 ~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
++|+.....+..||.+|+.-|...
T Consensus 21 ~~Le~~c~~~eQEieRL~~LLkqH 44 (48)
T 3vmx_A 21 QHLEFSCSEKEQEIERLNKLLKQN 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHccHHHHHHHHHHHHHHHc
Confidence 334444444456666666666543
No 153
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=25.01 E-value=44 Score=26.90 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 159 MYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 159 ~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
.||..|..++..|..+. .+...|..+|..|..+++.+
T Consensus 74 eYIk~Lq~~~~~l~~~~----~~~~~l~~~n~~L~~riqeL 110 (118)
T 4ati_A 74 DYIRKLQREQQRAKDLE----NRQKKLEHANRHLLLRVQEL 110 (118)
T ss_dssp HHHHHHHHHHHHHHHHC----C-------------------
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555444332 22445677777777776553
No 154
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.98 E-value=1.8e+02 Score=20.38 Aligned_cols=24 Identities=13% Similarity=0.072 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 175 CRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 175 N~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
+..|+.++..|..+|..|+.++..
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~ 47 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTL 47 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666544
No 155
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.55 E-value=1.1e+02 Score=29.37 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGN 200 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~ 200 (298)
++.||.....|+.|+..++.++..+..|-..++.++...+
T Consensus 51 lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 51 LKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556666666666666666666666666666666665543
No 156
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=23.95 E-value=1.1e+02 Score=26.94 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCV 185 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L 185 (298)
+.+|..++..|+++|.+|+.....+
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n~~ 178 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWNDV 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555444433
No 157
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.66 E-value=1.3e+02 Score=24.99 Aligned_cols=30 Identities=33% Similarity=0.237 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 167 KSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 167 kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
++++|+.|+..|.++++...+|-.+||..-
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345555555555555555555555555444
No 158
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=23.61 E-value=1.7e+02 Score=19.53 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022379 180 RLLHCVLAENQSLRFSL 196 (298)
Q Consensus 180 ~ql~~L~~ENq~LRqqL 196 (298)
.++..|..+|..|..++
T Consensus 20 dkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444445555555444
No 159
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=23.52 E-value=1.6e+02 Score=29.05 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccc
Q 022379 168 SRYLESECRKLGRLLHCVLAENQSLRFSLQKGNAYGASLT 207 (298)
Q Consensus 168 vk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a~g~~~~ 207 (298)
++.+..+...|..++..+..+-..+...|.+.-.-.++.+
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g 152 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIA 152 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 5666666666666666666666666555555443334443
No 160
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=22.96 E-value=1.9e+02 Score=21.85 Aligned_cols=22 Identities=41% Similarity=0.594 Sum_probs=14.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 022379 144 LRNRDAAVRSRERKKMYVKDLE 165 (298)
Q Consensus 144 lRNReSAqrSR~RKK~YV~eLE 165 (298)
-+|+..|..+=+|||.|=..|+
T Consensus 41 ~knK~~Al~aLkrKK~~E~qL~ 62 (79)
T 4abm_A 41 TKNKRAALQALKRKKRYEKQLA 62 (79)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHhHHHHHHH
Confidence 4577788888788877644443
No 161
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=22.89 E-value=1.6e+02 Score=19.08 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 168 SRYLESECRKLGRLLHCVLAENQSLRF 194 (298)
Q Consensus 168 vk~LE~EN~~L~~ql~~L~~ENq~LRq 194 (298)
+..|.+++..|++.+..|.-|-..|+|
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344556666666666666666666655
No 162
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.61 E-value=3.7e+02 Score=23.05 Aligned_cols=13 Identities=0% Similarity=0.107 Sum_probs=6.8
Q ss_pred ChhHHHHHHHHHh
Q 022379 134 DPISKKRRRQLRN 146 (298)
Q Consensus 134 d~e~KR~RRllRN 146 (298)
+++.+.+-+.++.
T Consensus 69 T~EQq~ql~~I~~ 81 (175)
T 3lay_A 69 TTEQQATAQKIYD 81 (175)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 4555555555544
No 163
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.54 E-value=51 Score=24.39 Aligned_cols=14 Identities=7% Similarity=0.181 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 022379 183 HCVLAENQSLRFSL 196 (298)
Q Consensus 183 ~~L~~ENq~LRqqL 196 (298)
..|+.+++.|..++
T Consensus 60 ~~L~~~~~~L~~e~ 73 (80)
T 1hlo_A 60 QYMRRKNHTHQQDI 73 (80)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 164
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.51 E-value=1.9e+02 Score=27.13 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 164 LEMKSRYLESECRKLGRLLHCVLAENQSLRF 194 (298)
Q Consensus 164 LE~kvk~LE~EN~~L~~ql~~L~~ENq~LRq 194 (298)
||..+...+.++..|+.++..+...-+.|.+
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~ 47 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQ 47 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333333333
No 165
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=22.18 E-value=3e+02 Score=21.95 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
-+.+|+.++...+..|..|...-..+..+...|+.++.-
T Consensus 84 ~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 84 KVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666666666677777777776643
No 166
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.18 E-value=1.9e+02 Score=23.53 Aligned_cols=37 Identities=8% Similarity=0.021 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
++-..+++.|+.||....+++.....|...|..++..
T Consensus 88 e~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 88 EEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567778888888877777777777777777654
No 167
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.07 E-value=2.6e+02 Score=26.56 Aligned_cols=43 Identities=23% Similarity=0.122 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 154 RERKKMYVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSL 196 (298)
Q Consensus 154 R~RKK~YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL 196 (298)
....+.+++.++.+++.+.++..+....-..|..+-+.|+-.+
T Consensus 19 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 19 IAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 3445566677777777776666665555556666666665443
No 168
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=21.83 E-value=1.4e+02 Score=19.87 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 022379 176 RKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 176 ~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
++|..+++.|..+|..|.+++.+
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~R 26 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXAR 26 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHH
Confidence 35555566666666666555543
No 169
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=21.80 E-value=1.6e+02 Score=22.11 Aligned_cols=42 Identities=12% Similarity=-0.188 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKGNA 201 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~~a 201 (298)
.+.-+|.-+..|.....+.+.++..|..+.+.|..++.....
T Consensus 22 klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 22 RLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456677788888888888999999999999999999876543
No 170
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.15 E-value=2e+02 Score=24.15 Aligned_cols=37 Identities=8% Similarity=0.016 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 162 KDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 162 ~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
++-..+++.|+.||....+++.....|...|..++..
T Consensus 88 eeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~ 124 (151)
T 1yke_B 88 EEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDS 124 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888999988888888888888888888765
No 171
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.10 E-value=2.2e+02 Score=19.93 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 164 LEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQ 197 (298)
Q Consensus 164 LE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~ 197 (298)
-|..|..|+.++..|...+..-...|..+.+.|.
T Consensus 10 AERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD 43 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELYAQKLKYKAISEELD 43 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555555566666665555555566666666553
No 172
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=21.03 E-value=1.5e+02 Score=24.65 Aligned_cols=32 Identities=16% Similarity=-0.131 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSL 192 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~L 192 (298)
+..||.++..++.+...+..++..+...-+.|
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (192)
T 2gkw_A 2 TGLLESQLSRHDQMLSVHDIRLADMDLRFQVL 33 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777777666666666555444444
No 173
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.94 E-value=1.6e+02 Score=28.40 Aligned_cols=39 Identities=15% Similarity=0.171 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 022379 161 VKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFSLQKG 199 (298)
Q Consensus 161 V~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqqL~~~ 199 (298)
++++|.+++..++...+|..+...|..+...++..+...
T Consensus 27 i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l 65 (405)
T 4b4t_J 27 IQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLL 65 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555444444445444444444444555555443
No 174
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=20.80 E-value=2.4e+02 Score=24.67 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 152 RSRERKKMYVKDLEMKSRYLESECRKLGRLLH 183 (298)
Q Consensus 152 rSR~RKK~YV~eLE~kvk~LE~EN~~L~~ql~ 183 (298)
++-.+-+.-+..||.++.....++..+++.+.
T Consensus 135 rtV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 135 DTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555544444444444443
No 175
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=20.53 E-value=4.2e+02 Score=24.00 Aligned_cols=57 Identities=25% Similarity=0.322 Sum_probs=32.4
Q ss_pred HHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 022379 141 RRQLRNRDAAVR-SRERKKMYVKDLEMKSRYL---ESECRKLGRLLHCVLAENQSLRFSLQK 198 (298)
Q Consensus 141 RRllRNReSAqr-SR~RKK~YV~eLE~kvk~L---E~EN~~L~~ql~~L~~ENq~LRqqL~~ 198 (298)
-.-+|||++.-+ +|.||+.-...+. +++.- ......|++++..+..+|..--.+|..
T Consensus 96 LK~IR~~E~svqp~R~~R~~l~~~I~-kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n 156 (234)
T 3plt_A 96 LKSIRNIEASVQPSRDRKEKITDEIA-HLKYKDPQSTKIPVLEQELVRAEAESLVAEAQLSN 156 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCTTCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH-HHhccCCCCchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 467899998855 4555444434332 22211 123456666666777777776667755
No 176
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=20.11 E-value=2.5e+02 Score=22.70 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 022379 160 YVKDLEMKSRYLESECRKLGRLLHCVLAENQSLRFS 195 (298)
Q Consensus 160 YV~eLE~kvk~LE~EN~~L~~ql~~L~~ENq~LRqq 195 (298)
-++++|..+..+..++.+..+.+..+...+..|..+
T Consensus 38 ~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~ 73 (103)
T 4h22_A 38 MLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQ 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555544444444444434333333
Done!