BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022380
         (298 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HX0|A Chain A, Three-Dimensional Structure Of The Hypothetical Protein
           From Salmonella Cholerae-Suis (Aka Salmonella Enterica)
           At The Resolution 1.55 A. Northeast Structural Genomics
           Target Scr59
          Length = 154

 Score = 37.0 bits (84), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 100 ITRESANTLRAHILEVGNGCDVFDCVANYARRRQ-RGICILSGSGTVTNVSIRQPAAAGA 158
           ++  +A+T R + L +  G +VF  +  + ++ Q R   I   +G++T+V++R  A   A
Sbjct: 10  VSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRY-AGQEA 68

Query: 159 IVTLHGRFEILSLSGSF 175
             +L G FE++SL+G+ 
Sbjct: 69  TTSLTGTFEVISLNGTL 85


>pdb|2NMU|A Chain A, Crystal Structure Of The Hypothetical Protein From
           Salmonella Typhimurium Lt2. Northeast Structural
           Genomics Consortium Target Str127
          Length = 156

 Score = 36.6 bits (83), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 2/77 (2%)

Query: 100 ITRESANTLRAHILEVGNGCDVFDCVANYARRRQ-RGICILSGSGTVTNVSIRQPAAAGA 158
           ++  +A+T R + L +  G +VF  +  + ++ Q R   I   +G++T+V++R  A   A
Sbjct: 10  VSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRY-AGQEA 68

Query: 159 IVTLHGRFEILSLSGSF 175
             +L G FE++SL+G+ 
Sbjct: 69  TTSLTGTFEVISLNGTL 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.136    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,348,932
Number of Sequences: 62578
Number of extensions: 300852
Number of successful extensions: 554
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 3
length of query: 298
length of database: 14,973,337
effective HSP length: 98
effective length of query: 200
effective length of database: 8,840,693
effective search space: 1768138600
effective search space used: 1768138600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)