BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 022380
         (298 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 145/338 (42%), Positives = 186/338 (55%), Gaps = 81/338 (23%)

Query: 7   GTASRYVHHQLHRPDLHLQH------------------------QPADDSEEHDNNNNNN 42
           G ASRY H+ L RP++H Q                         QP+DDS E D++N ++
Sbjct: 9   GGASRYFHN-LFRPEIHHQQLQPQGGINLIDQHHHQHQQHQQQQQPSDDSRESDHSNKDH 67

Query: 43  NNNHRVGGAQFSDGSDHHQGLDLVNAAGNSGGHGDIVARRPRGRPPGSKNKPKPPVIITR 102
                           H QG    +   +S   G    +RPRGRPPGSKNK KPP+I+TR
Sbjct: 68  ----------------HQQGRPDSDPNTSSSAPG----KRPRGRPPGSKNKAKPPIIVTR 107

Query: 103 ESANTLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAA------- 155
           +S N LR+H+LEV  G D+ + V+ YARRR RG+ +L G+GTV+NV++RQP         
Sbjct: 108 DSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGV 167

Query: 156 --AGAIVTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPV 213
              G +VTLHGRFEILSL+G+ LPPPAPPGA  L+IFLAGGQGQVVGGSVV  L A+ PV
Sbjct: 168 SGGGGVVTLHGRFEILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPV 227

Query: 214 IVIAASFTNVAYERLPLDEDEQL-------------QMQQASGGSGGAGGGNPNNLFADA 260
           I++AASF+N  +ERLP++E+E+              QMQQA   S  +G      L    
Sbjct: 228 ILMAASFSNAVFERLPIEEEEEEGGGGGGGGGGGPPQMQQAPSASPPSGVTGQGQL---- 283

Query: 261 GAGSAGGLPFFNLPLNMPPNVQLPVEGWSGNAGVRPPF 298
             G+ GG  F   P  +         GW      RPPF
Sbjct: 284 -GGNVGGYGFSGDPHLL---------GWGAGTPSRPPF 311


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.315    0.136    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134,259,552
Number of Sequences: 539616
Number of extensions: 6618610
Number of successful extensions: 88661
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 160
Number of HSP's that attempted gapping in prelim test: 49508
Number of HSP's gapped (non-prelim): 28775
length of query: 298
length of database: 191,569,459
effective HSP length: 117
effective length of query: 181
effective length of database: 128,434,387
effective search space: 23246624047
effective search space used: 23246624047
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)