Query 022380
Match_columns 298
No_of_seqs 230 out of 461
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 03:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022380.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022380hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03479 DUF296: Domain of unk 99.9 7.6E-28 1.7E-32 198.4 10.6 118 108-227 1-120 (120)
2 COG1661 Predicted DNA-binding 99.9 2.9E-23 6.3E-28 178.4 14.0 122 106-231 7-131 (141)
3 PF02178 AT_hook: AT hook moti 89.8 0.13 2.9E-06 28.4 0.5 13 81-93 1-13 (13)
4 smart00384 AT_hook DNA binding 77.8 1.5 3.2E-05 28.6 1.5 15 81-95 1-15 (26)
5 PF14869 DUF4488: Domain of un 34.3 42 0.00091 29.5 3.0 35 135-171 28-62 (133)
6 cd01817 RGS12_RBD Ubiquitin do 33.7 98 0.0021 24.6 4.7 43 111-153 12-56 (73)
7 PF02196 RBD: Raf-like Ras-bin 30.2 1.7E+02 0.0038 22.3 5.5 36 108-143 10-47 (71)
8 TIGR01252 acetolac_decarb alph 28.1 2.6E+02 0.0057 26.3 7.4 92 134-229 106-209 (232)
9 smart00455 RBD Raf-like Ras-bi 27.4 1.4E+02 0.0031 22.8 4.6 45 109-153 10-56 (70)
10 PRK11675 LexA regulated protei 26.3 50 0.0011 27.2 2.0 32 101-134 43-74 (90)
11 cd01760 RBD Ubiquitin-like dom 26.0 1.4E+02 0.0031 23.2 4.5 37 109-145 10-48 (72)
12 cd04603 CBS_pair_KefB_assoc Th 20.2 1.6E+02 0.0034 22.4 3.7 34 108-141 62-95 (111)
No 1
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=99.95 E-value=7.6e-28 Score=198.42 Aligned_cols=118 Identities=25% Similarity=0.429 Sum_probs=100.5
Q ss_pred ceeEEEEeCCCccHHHHHHHHHHhcCcceEEEEeeeeeceEEEecCC--CCCCeeeeeeceEEEEeeeeccCCCCCCCCC
Q 022380 108 LRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPA--AAGAIVTLHGRFEILSLSGSFLPPPAPPGAT 185 (298)
Q Consensus 108 mrphVLrV~pGeDVvesI~~fArr~~ravcVLSg~GsVsnVTLRqp~--s~g~~vtleG~FEILSLsGT~~p~~~~~~~~ 185 (298)
||+|++||++||||+++|.+||+++++..|++|++|+|++|+|++++ ....+.+++|+|||+||+|||.+.++ .+..
T Consensus 1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g-~~~~ 79 (120)
T PF03479_consen 1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG-KPFV 79 (120)
T ss_dssp EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT-EEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC-CCcc
Confidence 79999999999999999999999999988999999999999999984 33578899999999999999998433 2668
Q ss_pred eeEEEEeCCCCcEEceeccCceEecccEEEEEEeeecccccc
Q 022380 186 SLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYER 227 (298)
Q Consensus 186 hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~R 227 (298)
||||+|+|.+|+|+||||..+.+ ..++||++-.+....|+|
T Consensus 80 HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~~~~~ 120 (120)
T PF03479_consen 80 HLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGINFTR 120 (120)
T ss_dssp EEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTEEEEE
T ss_pred eEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCccccC
Confidence 99999999999999999995555 455777777777766665
No 2
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=99.90 E-value=2.9e-23 Score=178.40 Aligned_cols=122 Identities=16% Similarity=0.229 Sum_probs=114.1
Q ss_pred CCceeEEEEeCCCccHHHHHHHHHHhcCcceEEEEeeeeeceEEEecCCCC---CCeeeeeeceEEEEeeeeccCCCCCC
Q 022380 106 NTLRAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAA---GAIVTLHGRFEILSLSGSFLPPPAPP 182 (298)
Q Consensus 106 ~~mrphVLrV~pGeDVvesI~~fArr~~ravcVLSg~GsVsnVTLRqp~s~---g~~vtleG~FEILSLsGT~~p~~~~~ 182 (298)
..-|.+++||++|+|+++.|.+||+++++..++++|+|++++++||+++.. ..++.+.++||||||.|+|...+
T Consensus 7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~--- 83 (141)
T COG1661 7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD--- 83 (141)
T ss_pred ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence 446889999999999999999999999988899999999999999999843 36889999999999999999988
Q ss_pred CCCeeEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccCc
Q 022380 183 GATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLD 231 (298)
Q Consensus 183 ~~~hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~~ 231 (298)
+..|||++|++++|.++|||+..+++.. ++||+|-.+....++|.+++
T Consensus 84 p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~~R~~d~ 131 (141)
T COG1661 84 PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELFRREFDP 131 (141)
T ss_pred CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccceeEecCC
Confidence 7899999999999999999999999888 89999999999999999887
No 3
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=89.76 E-value=0.13 Score=28.37 Aligned_cols=13 Identities=46% Similarity=0.843 Sum_probs=4.2
Q ss_pred CCCCCCCCCCCCC
Q 022380 81 RRPRGRPPGSKNK 93 (298)
Q Consensus 81 rr~RGRP~GSknK 93 (298)
+|+||||+.+..|
T Consensus 1 ~r~RGRP~k~~~~ 13 (13)
T PF02178_consen 1 KRKRGRPRKNAKK 13 (13)
T ss_dssp S--SS--TT----
T ss_pred CCcCCCCccccCC
Confidence 4899999987654
No 4
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=77.84 E-value=1.5 Score=28.55 Aligned_cols=15 Identities=33% Similarity=0.680 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCC
Q 022380 81 RRPRGRPPGSKNKPK 95 (298)
Q Consensus 81 rr~RGRP~GSknK~k 95 (298)
+|+||||+..++...
T Consensus 1 kRkRGRPrK~~~~~~ 15 (26)
T smart00384 1 KRKRGRPRKAPKDXX 15 (26)
T ss_pred CCCCCCCCCCCCccc
Confidence 589999998776654
No 5
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=34.33 E-value=42 Score=29.49 Aligned_cols=35 Identities=40% Similarity=0.525 Sum_probs=29.1
Q ss_pred ceEEEEeeeeeceEEEecCCCCCCeeeeeeceEEEEe
Q 022380 135 GICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSL 171 (298)
Q Consensus 135 avcVLSg~GsVsnVTLRqp~s~g~~vtleG~FEILSL 171 (298)
.+=|||.-|+..|+++ .+.+ +++++..|.||+.|=
T Consensus 28 ~lKilS~Dgtf~Ni~~-~~~~-~aiIt~~GtY~~~sD 62 (133)
T PF14869_consen 28 VLKILSDDGTFVNITM-IPKS-GAIITGYGTYEQPSD 62 (133)
T ss_pred cEEEEcCCCcEEEEEE-eCCC-CcEEEEeEEEEEcCC
Confidence 4679999999999999 3333 689999999999873
No 6
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=33.74 E-value=98 Score=24.59 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=32.6
Q ss_pred EEEEeCCCccHHHHHHHHHHhcCc--ceEEEEeeeeeceEEEecC
Q 022380 111 HILEVGNGCDVFDCVANYARRRQR--GICILSGSGTVTNVSIRQP 153 (298)
Q Consensus 111 hVLrV~pGeDVvesI~~fArr~~r--avcVLSg~GsVsnVTLRqp 153 (298)
-++.+.||+-|.+.|+..+++|+. ..|.+--.|.=.-+.+-+.
T Consensus 12 T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~~~qD 56 (73)
T cd01817 12 TVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLVLDQD 56 (73)
T ss_pred EEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccccCCc
Confidence 378999999999999999999983 5666665565555555554
No 7
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=30.18 E-value=1.7e+02 Score=22.27 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=29.9
Q ss_pred ceeEEEEeCCCccHHHHHHHHHHhcC--cceEEEEeee
Q 022380 108 LRAHILEVGNGCDVFDCVANYARRRQ--RGICILSGSG 143 (298)
Q Consensus 108 mrphVLrV~pGeDVvesI~~fArr~~--ravcVLSg~G 143 (298)
-++-++.+.+|+-|.+.|...+++++ ...|.+--+|
T Consensus 10 ~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 10 GQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp TEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 35668999999999999999999998 4678887777
No 8
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase. Puruvate can be fermented to 2,3-butanediol. It is first converted to alpha-acetolactate by alpha-acetolactate synthase, then decarboxylated to acetoin by this enzyme. Acetoin can be reduced in some species to 2,3-butanediol by acetoin reductase.
Probab=28.10 E-value=2.6e+02 Score=26.34 Aligned_cols=92 Identities=14% Similarity=0.254 Sum_probs=56.2
Q ss_pred cceEEEEeeeeeceEEEecCCCCC-------CeeeeeeceEEEEeeeecc----CCCCCC-CCCeeEEEEeCCCCcEEce
Q 022380 134 RGICILSGSGTVTNVSIRQPAAAG-------AIVTLHGRFEILSLSGSFL----PPPAPP-GATSLTIFLAGGQGQVVGG 201 (298)
Q Consensus 134 ravcVLSg~GsVsnVTLRqp~s~g-------~~vtleG~FEILSLsGT~~----p~~~~~-~~~hLhISLAd~qGqViGG 201 (298)
...+-+-..|..++|+.|-.-.+. .++.=.-.||+-.++||+. |.-... .-.++|+.+-+.| +-+||
T Consensus 106 N~f~Airi~G~F~~v~~Rsvp~Q~kPy~~l~e~~~~Q~~f~~~nv~GTlvGF~sP~~~~gi~v~G~HlHFisdD-r~~GG 184 (232)
T TIGR01252 106 NVFYAIRITGEFPKVQTRTVPKQEKPYPPFVEVVKGQPEFHFDNVTGTIVGFWTPAYAKGINVAGYHLHFISED-RTFGG 184 (232)
T ss_pred ccEEEEEEEEEeceeEEEecCCCCCCCcCHHHHhcCCceEEEeccEEEEEEEecchhccccCCceEEEEEecCC-CCCCc
Confidence 468888999999999999864322 1122245577766666654 432111 2246666666554 45699
Q ss_pred eccCceEecccEEEEEEeeecccccccc
Q 022380 202 SVVGELTAAGPVIVIAASFTNVAYERLP 229 (298)
Q Consensus 202 hV~G~LIAAtpV~VV~gSF~n~~f~RlP 229 (298)
||..--+.. +.|-+..+.+... +||
T Consensus 185 HVld~~~~~--~~~~i~~~~~~~~-~lP 209 (232)
T TIGR01252 185 HVLDYIIDN--GTLEIGQIQEFNL-QLP 209 (232)
T ss_pred ceeEEEeee--eEEEEeecccEEE-eCC
Confidence 999876654 4455555554443 456
No 9
>smart00455 RBD Raf-like Ras-binding domain.
Probab=27.39 E-value=1.4e+02 Score=22.77 Aligned_cols=45 Identities=22% Similarity=0.411 Sum_probs=34.0
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhcCc--ceEEEEeeeeeceEEEecC
Q 022380 109 RAHILEVGNGCDVFDCVANYARRRQR--GICILSGSGTVTNVSIRQP 153 (298)
Q Consensus 109 rphVLrV~pGeDVvesI~~fArr~~r--avcVLSg~GsVsnVTLRqp 153 (298)
+...+.+.||+-|.+.|...|++++. ..|.|.-.|.=..+.+.++
T Consensus 10 ~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ldl~~~ 56 (70)
T smart00455 10 QRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLDLNQP 56 (70)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcceecCCc
Confidence 56689999999999999999999983 5677776663334444444
No 10
>PRK11675 LexA regulated protein; Provisional
Probab=26.35 E-value=50 Score=27.20 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=24.5
Q ss_pred eccCcCCceeEEEEeCCCccHHHHHHHHHHhcCc
Q 022380 101 TRESANTLRAHILEVGNGCDVFDCVANYARRRQR 134 (298)
Q Consensus 101 t~~s~~~mrphVLrV~pGeDVvesI~~fArr~~r 134 (298)
-+|-..+++..-|+ --+|++++|.+||.+++.
T Consensus 43 ~rdk~~glKRveVK--ldedl~ekL~eyAe~~ni 74 (90)
T PRK11675 43 KRDKVRGLKRVELK--LNADLVDALNELAEARNI 74 (90)
T ss_pred HHHHHcCceeEEEE--ECHHHHHHHHHHHHHcCC
Confidence 35667788855444 568999999999999874
No 11
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=26.05 E-value=1.4e+02 Score=23.17 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=29.6
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhcCc--ceEEEEeeeee
Q 022380 109 RAHILEVGNGCDVFDCVANYARRRQR--GICILSGSGTV 145 (298)
Q Consensus 109 rphVLrV~pGeDVvesI~~fArr~~r--avcVLSg~GsV 145 (298)
+..++.|.||+-|.+.|...|++++. ..|.|--.|.-
T Consensus 10 ~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~ 48 (72)
T cd01760 10 QRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLD 48 (72)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCC
Confidence 45589999999999999999999983 56666655554
No 12
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=20.18 E-value=1.6e+02 Score=22.36 Aligned_cols=34 Identities=9% Similarity=0.045 Sum_probs=28.1
Q ss_pred ceeEEEEeCCCccHHHHHHHHHHhcCcceEEEEe
Q 022380 108 LRAHILEVGNGCDVFDCVANYARRRQRGICILSG 141 (298)
Q Consensus 108 mrphVLrV~pGeDVvesI~~fArr~~ravcVLSg 141 (298)
|+..+..+.+.+.+.+.+..+.+.+...++|+..
T Consensus 62 ~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~ 95 (111)
T cd04603 62 YIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK 95 (111)
T ss_pred eecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC
Confidence 5555678999999999999998888788888865
Done!