Query 022380
Match_columns 298
No_of_seqs 230 out of 461
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 04:32:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022380.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022380hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p6y_A Hypothetical protein VC 100.0 6E-30 2.1E-34 215.6 15.8 120 107-232 1-121 (142)
2 2hx0_A Putative DNA-binding pr 100.0 5.5E-30 1.9E-34 218.7 15.6 127 100-232 10-137 (154)
3 2dt4_A Hypothetical protein PH 100.0 2E-29 6.9E-34 211.9 11.9 120 109-232 10-132 (143)
4 2h6l_A Hypothetical protein; N 100.0 2.9E-29 9.8E-34 211.6 10.8 120 109-232 10-132 (146)
5 3htn_A Putative DNA binding pr 99.9 7.7E-28 2.6E-32 204.5 11.4 121 109-232 16-139 (149)
6 3hwu_A Putative DNA-binding pr 99.9 8.3E-25 2.8E-29 185.2 11.7 121 109-232 13-136 (147)
7 2ezd_A High mobility group pro 97.6 3.2E-05 1.1E-09 48.6 2.2 17 79-95 3-19 (26)
8 4i95_A Putative uncharacterize 57.5 7.2 0.00025 33.3 3.2 34 135-170 37-70 (142)
9 1t3g_A X-linked interleukin-1 36.2 23 0.00077 29.4 3.0 27 115-141 51-77 (159)
10 1xv2_A ALDC, hypothetical prot 35.2 52 0.0018 29.7 5.4 106 119-230 97-214 (237)
11 4gzv_A Hypothetical protein; A 33.8 28 0.00096 29.6 3.1 34 135-170 37-70 (142)
12 1fyx_A TOLL-like receptor 2; b 27.9 31 0.001 28.1 2.4 28 114-141 43-70 (149)
13 2j67_A TOLL like receptor 10; 25.4 34 0.0012 29.0 2.3 27 115-141 74-100 (178)
No 1
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.97 E-value=6e-30 Score=215.62 Aligned_cols=120 Identities=21% Similarity=0.288 Sum_probs=110.3
Q ss_pred CceeEEEEeCCCccHHHHHHHHHHhcCc-ceEEEEeeeeeceEEEecCCCCCCeeeeeeceEEEEeeeeccCCCCCCCCC
Q 022380 107 TLRAHILEVGNGCDVFDCVANYARRRQR-GICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLPPPAPPGAT 185 (298)
Q Consensus 107 ~mrphVLrV~pGeDVvesI~~fArr~~r-avcVLSg~GsVsnVTLRqp~s~g~~vtleG~FEILSLsGT~~p~~~~~~~~ 185 (298)
+|++|++||++||||+++|.+||+++++ ++||++++|+|++++||+++.. .+++++|+|||+||+|||++. ..
T Consensus 1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~-~~~~~~g~~EIlsl~Gti~~~-----~~ 74 (142)
T 2p6y_A 1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSV-STLQVSAPFEILSLSGTLTYQ-----HC 74 (142)
T ss_dssp CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSS-CEEEECSCEEEEEEEEEECSS-----CE
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCC-ccEecCCcEEEEEeEEEEeCC-----CC
Confidence 4899999999999999999999999985 7899999999999999999874 478899999999999999985 38
Q ss_pred eeEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccCch
Q 022380 186 SLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE 232 (298)
Q Consensus 186 hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~~~ 232 (298)
||||+++|.+|+|+||||++++++.+++||++..|.+..|+|.||++
T Consensus 75 HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~~D~e 121 (142)
T 2p6y_A 75 HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREFDPN 121 (142)
T ss_dssp EEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEEEETT
T ss_pred EEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEeeCCC
Confidence 99999999999999999988777788999999999999999999865
No 2
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.97 E-value=5.5e-30 Score=218.67 Aligned_cols=127 Identities=21% Similarity=0.393 Sum_probs=115.3
Q ss_pred eeccCcCCceeEEEEeCCCccHHHHHHHHHHhcCc-ceEEEEeeeeeceEEEecCCCCCCeeeeeeceEEEEeeeeccCC
Q 022380 100 ITRESANTLRAHILEVGNGCDVFDCVANYARRRQR-GICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILSLSGSFLPP 178 (298)
Q Consensus 100 it~~s~~~mrphVLrV~pGeDVvesI~~fArr~~r-avcVLSg~GsVsnVTLRqp~s~g~~vtleG~FEILSLsGT~~p~ 178 (298)
++.++++.+|+|++||++||||+++|.+||+++++ ++||+|++|+|++|+||+++... +++++|+|||+||+|||++.
T Consensus 10 ~~~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~ 88 (154)
T 2hx0_A 10 VSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT 88 (154)
T ss_dssp --CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT
T ss_pred eccCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC
Confidence 34567889999999999999999999999999885 78999999999999999998644 78999999999999999985
Q ss_pred CCCCCCCeeEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccCch
Q 022380 179 PAPPGATSLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE 232 (298)
Q Consensus 179 ~~~~~~~hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~~~ 232 (298)
..||||+++|.+|+|+||||++++++.+++||++..|.+..|+|.||++
T Consensus 89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~D~e 137 (154)
T 2hx0_A 89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAI 137 (154)
T ss_dssp -----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTT
T ss_pred -----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEecCCC
Confidence 3899999999999999999988777778999999999999999999875
No 3
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.96 E-value=2e-29 Score=211.85 Aligned_cols=120 Identities=21% Similarity=0.351 Sum_probs=108.9
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhcCcceEEEEeeeeeceEEEecCCCCC---CeeeeeeceEEEEeeeeccCCCCCCCCC
Q 022380 109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAG---AIVTLHGRFEILSLSGSFLPPPAPPGAT 185 (298)
Q Consensus 109 rphVLrV~pGeDVvesI~~fArr~~ravcVLSg~GsVsnVTLRqp~s~g---~~vtleG~FEILSLsGT~~p~~~~~~~~ 185 (298)
++|++||++||||+++|.+||+++++..|+++++|+|++|+||+++... ..++++|+|||+||+|||++.+++ ++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~-p~~ 88 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE-PFV 88 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE-EEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC-cee
Confidence 7999999999999999999999999877777999999999999987543 468999999999999999997554 579
Q ss_pred eeEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccCch
Q 022380 186 SLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE 232 (298)
Q Consensus 186 hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~~~ 232 (298)
||||+++|.+|+|+||||...+ .. ++||++.+|.+..|+|+| ++
T Consensus 89 HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~-~e 132 (143)
T 2dt4_A 89 HAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP-TK 132 (143)
T ss_dssp EEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC-CT
T ss_pred eEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC-CC
Confidence 9999999999999999999888 55 899999999999999999 43
No 4
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.96 E-value=2.9e-29 Score=211.60 Aligned_cols=120 Identities=20% Similarity=0.241 Sum_probs=109.3
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhcCcceEEEEeeeeeceEEEecCCCCC---CeeeeeeceEEEEeeeeccCCCCCCCCC
Q 022380 109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAG---AIVTLHGRFEILSLSGSFLPPPAPPGAT 185 (298)
Q Consensus 109 rphVLrV~pGeDVvesI~~fArr~~ravcVLSg~GsVsnVTLRqp~s~g---~~vtleG~FEILSLsGT~~p~~~~~~~~ 185 (298)
++|++||++||||+++|.+||+++++..|+++++|+|++++||+++... .+++++|+|||+||+|||++.+++ ++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~-p~~ 88 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK-PFC 88 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC-cee
Confidence 6999999999999999999999999766666999999999999997654 478999999999999999997554 579
Q ss_pred eeEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccCch
Q 022380 186 SLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE 232 (298)
Q Consensus 186 hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~~~ 232 (298)
||||+|+ .+|+|+||||++.+| .++||++.+|.+..|+|+||++
T Consensus 89 HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~e 132 (146)
T 2h6l_A 89 HIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQ 132 (146)
T ss_dssp EEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTT
T ss_pred eEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCC
Confidence 9999999 999999999999885 6899999999999999999875
No 5
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.95 E-value=7.7e-28 Score=204.45 Aligned_cols=121 Identities=12% Similarity=0.203 Sum_probs=109.6
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhcCcceEEEEeeeeeceEEEecCCCCC---CeeeeeeceEEEEeeeeccCCCCCCCCC
Q 022380 109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAG---AIVTLHGRFEILSLSGSFLPPPAPPGAT 185 (298)
Q Consensus 109 rphVLrV~pGeDVvesI~~fArr~~ravcVLSg~GsVsnVTLRqp~s~g---~~vtleG~FEILSLsGT~~p~~~~~~~~ 185 (298)
|.|++||++|+||+++|.+||+++++..|+++++|+|++|+||+++... ..++++|+|||+||+|||++.+++ +..
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~-p~~ 94 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQ-VYL 94 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCC-ceE
Confidence 7999999999999999999999999887777999999999999987532 378999999999999999997654 578
Q ss_pred eeEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccCch
Q 022380 186 SLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE 232 (298)
Q Consensus 186 hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~~~ 232 (298)
||||+|+|++|+|+||||..+ ++.+++||++..+.. .++|.+|++
T Consensus 95 HlH~sl~~~~G~v~gGHl~~g-~V~~t~Ei~i~~~~~-~~~R~~D~~ 139 (149)
T 3htn_A 95 HLHITVGRSDYSALAGHLLSA-IQNGAGEFVVEDYSE-RISRTYNPD 139 (149)
T ss_dssp EEEEEEECTTSBEEEEEEEEE-EEEEEEEEEEEECCS-CCEEEEETT
T ss_pred EEEEEEECCCCCEEeEEeCCC-EEEEEEEEEEEEcCC-eeEEeeCCc
Confidence 999999999999999999987 667889999999988 899998865
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.92 E-value=8.3e-25 Score=185.22 Aligned_cols=121 Identities=15% Similarity=0.185 Sum_probs=105.8
Q ss_pred eeEEEEeCCCccHHHHHHHHHHhcCcceEEEEeeeeeceEEEecCCCCC---CeeeeeeceEEEEeeeeccCCCCCCCCC
Q 022380 109 RAHILEVGNGCDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAG---AIVTLHGRFEILSLSGSFLPPPAPPGAT 185 (298)
Q Consensus 109 rphVLrV~pGeDVvesI~~fArr~~ravcVLSg~GsVsnVTLRqp~s~g---~~vtleG~FEILSLsGT~~p~~~~~~~~ 185 (298)
+.+++||++|+||+++|.+||+++++..++++++|++++++||.++... ...+++ ++||+||+||+++.++. ++.
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG~-p~~ 90 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEGK-PSI 90 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETTE-EEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCCC-ceE
Confidence 5689999999999999999999999888888999999999999887533 356788 89999999999986643 578
Q ss_pred eeEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccCch
Q 022380 186 SLTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLDE 232 (298)
Q Consensus 186 hLhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~~~ 232 (298)
|||++++|.+|+|+||||....|..+|+||++..+. ..|+|.+|++
T Consensus 91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~-~~~~R~~D~~ 136 (147)
T 3hwu_A 91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYP-QRLDRFVDPE 136 (147)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEES-SCCBEEEETT
T ss_pred EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcC-CeEEEEECCc
Confidence 999999999999999999888665558999999875 5999998764
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=97.56 E-value=3.2e-05 Score=48.60 Aligned_cols=17 Identities=65% Similarity=1.083 Sum_probs=15.2
Q ss_pred CCCCCCCCCCCCCCCCC
Q 022380 79 VARRPRGRPPGSKNKPK 95 (298)
Q Consensus 79 ~~rr~RGRP~GSknK~k 95 (298)
..|||||||.|||||.-
T Consensus 3 tpKrpRgRpkGSKNk~~ 19 (26)
T 2ezd_A 3 TPKRPRGRPKGSKNKGA 19 (26)
T ss_dssp SCCCCSSCCTTCCCCSC
T ss_pred CCcCCCCCcCcccccCc
Confidence 57999999999999964
No 8
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=57.45 E-value=7.2 Score=33.27 Aligned_cols=34 Identities=35% Similarity=0.587 Sum_probs=29.6
Q ss_pred ceEEEEeeeeeceEEEecCCCCCCeeeeeeceEEEE
Q 022380 135 GICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILS 170 (298)
Q Consensus 135 avcVLSg~GsVsnVTLRqp~s~g~~vtleG~FEILS 170 (298)
.+=|||.-|+..|++++ ++ ..++++..|.|||.|
T Consensus 37 ~lKIlSdDgtF~Ni~m~-~~-~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 37 TFKVLSDDGRIVNFTIR-PG-TDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEECTTSEEEEEECC-TT-SCCEEEEEEEEEEEE
T ss_pred cEEEEcCCCcEEEEEEe-cC-CCcEEEEeEEEEecC
Confidence 46689999999999999 33 478999999999987
No 9
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=36.24 E-value=23 Score=29.37 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=24.5
Q ss_pred eCCCccHHHHHHHHHHhcCcceEEEEe
Q 022380 115 VGNGCDVFDCVANYARRRQRGICILSG 141 (298)
Q Consensus 115 V~pGeDVvesI~~fArr~~ravcVLSg 141 (298)
+.+|++|.+.|.+..++-.+.|+|||-
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~ 77 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTP 77 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEcc
Confidence 679999999999999888899999985
No 10
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=35.23 E-value=52 Score=29.71 Aligned_cols=106 Identities=14% Similarity=0.135 Sum_probs=59.7
Q ss_pred ccHHHHHHHHHHhcCcceEEEEeeeeeceEEEecCCCCCC-------eeeeeeceEEEEeeeec----cCCCCCC-CCCe
Q 022380 119 CDVFDCVANYARRRQRGICILSGSGTVTNVSIRQPAAAGA-------IVTLHGRFEILSLSGSF----LPPPAPP-GATS 186 (298)
Q Consensus 119 eDVvesI~~fArr~~ravcVLSg~GsVsnVTLRqp~s~g~-------~vtleG~FEILSLsGT~----~p~~~~~-~~~h 186 (298)
+++.+.|.+.. ...-.|.+-..|..++|+.|....+.. ++.-+=.|+.=-.+||+ +|.-... ...+
T Consensus 97 ~~l~~~i~~~~--s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi~v~G 174 (237)
T 1xv2_A 97 DVFAQIKNEML--SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAG 174 (237)
T ss_dssp HHHHHHHHHSS--CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTTBCSE
T ss_pred HHHHHHHHhhh--ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhcccCCce
Confidence 44444444433 345678889999999999997642221 11222335554555554 5543211 2246
Q ss_pred eEEEEeCCCCcEEceeccCceEecccEEEEEEeeeccccccccC
Q 022380 187 LTIFLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPL 230 (298)
Q Consensus 187 LhISLAd~qGqViGGhV~G~LIAAtpV~VV~gSF~n~~f~RlP~ 230 (298)
+|+.+.+.|-+ +||||..--+...+| -++.+.+... +||.
T Consensus 175 ~HlHFisdDr~-~GGHVldf~~~~~~~--~~~~~~~~~l-~lP~ 214 (237)
T 1xv2_A 175 FHIHFADDERA-YGGHVLDFEVDDVVV--EIQNFETFQQ-HFPV 214 (237)
T ss_dssp EEEEEEETTSS-CEEEEEEEEEEEEEE--EEEECSEEEE-ECCT
T ss_pred eEEEEEcCCCC-CCcceEEEEecceEE--EEeecccEEE-ECCC
Confidence 66666666554 899999876655444 4444444332 5665
No 11
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=33.77 E-value=28 Score=29.63 Aligned_cols=34 Identities=32% Similarity=0.451 Sum_probs=28.5
Q ss_pred ceEEEEeeeeeceEEEecCCCCCCeeeeeeceEEEE
Q 022380 135 GICILSGSGTVTNVSIRQPAAAGAIVTLHGRFEILS 170 (298)
Q Consensus 135 avcVLSg~GsVsnVTLRqp~s~g~~vtleG~FEILS 170 (298)
..=|||.-|+..|+++..- ++++++..|.|||.|
T Consensus 37 ~~KIlS~DgtF~N~~m~~~--~~aiIt~yGtY~l~S 70 (142)
T 4gzv_A 37 TFKVLSDDGRIVNFTIIPG--ADAIITGYGTYKQLT 70 (142)
T ss_dssp EEEEECTTSEEEEEECCTT--SCCEEEEEEEEEEEE
T ss_pred ceEEECCCCcEEEEEEeCC--CCcEEEEeEEEEecC
Confidence 4569999999999998542 267899999999987
No 12
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=27.91 E-value=31 Score=28.07 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=25.0
Q ss_pred EeCCCccHHHHHHHHHHhcCcceEEEEe
Q 022380 114 EVGNGCDVFDCVANYARRRQRGICILSG 141 (298)
Q Consensus 114 rV~pGeDVvesI~~fArr~~ravcVLSg 141 (298)
.+.+|+++.+.|.+-.++-.+.++|||-
T Consensus 43 d~~~G~~~~~~i~~~i~~Sr~~I~VlS~ 70 (149)
T 1fyx_A 43 DFIHGKWIIDNIIDSIEKSHKTVFVLSE 70 (149)
T ss_dssp HCCSSSCHHHHHHHHHHHEEEEEEEECH
T ss_pred cCCCchhHHHHHHHHHHHcCEEEEEeCc
Confidence 3789999999999999888899999985
No 13
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=25.44 E-value=34 Score=28.99 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=24.4
Q ss_pred eCCCccHHHHHHHHHHhcCcceEEEEe
Q 022380 115 VGNGCDVFDCVANYARRRQRGICILSG 141 (298)
Q Consensus 115 V~pGeDVvesI~~fArr~~ravcVLSg 141 (298)
+.+|++|.+.|.+..++-.+.|+|||-
T Consensus 74 ~~~G~~i~~~i~~aI~~Sr~~IvVlS~ 100 (178)
T 2j67_A 74 FDPGKSISENIVSFIEKSYKSIFVLSP 100 (178)
T ss_dssp CCTTSCHHHHHHHHHHTEEEEEEEECH
T ss_pred CCCCccHHHHHHHHHHhCCEEEEEecc
Confidence 779999999999998888899999985
Done!