Query 022381
Match_columns 298
No_of_seqs 319 out of 1697
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 03:05:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 100.0 2.8E-38 6.1E-43 267.8 23.5 207 86-297 6-226 (231)
2 PRK09481 sspA stringent starva 100.0 2.4E-35 5.2E-40 253.6 21.2 187 88-285 9-205 (211)
3 TIGR00862 O-ClC intracellular 100.0 3.7E-32 8E-37 235.7 20.1 192 96-294 17-232 (236)
4 PLN02473 glutathione S-transfe 100.0 2.3E-32 5E-37 235.3 17.5 186 88-282 1-211 (214)
5 PRK15113 glutathione S-transfe 100.0 1.6E-31 3.4E-36 230.4 19.6 184 88-284 4-210 (214)
6 PLN02817 glutathione dehydroge 100.0 4.3E-31 9.3E-36 233.7 20.9 191 96-295 71-264 (265)
7 PLN02378 glutathione S-transfe 100.0 9.7E-31 2.1E-35 225.3 21.1 189 95-292 17-209 (213)
8 PRK10542 glutathionine S-trans 100.0 4.1E-31 8.8E-36 225.2 15.8 180 90-282 1-197 (201)
9 PRK10357 putative glutathione 100.0 1.5E-30 3.1E-35 222.1 18.9 183 90-282 1-200 (202)
10 PRK13972 GSH-dependent disulfi 100.0 5.5E-31 1.2E-35 227.0 15.9 179 89-282 1-205 (215)
11 KOG0868 Glutathione S-transfer 100.0 7.2E-31 1.6E-35 209.9 14.6 186 88-283 4-208 (217)
12 TIGR01262 maiA maleylacetoacet 100.0 3.1E-30 6.7E-35 221.3 19.4 183 91-283 1-205 (210)
13 PLN02395 glutathione S-transfe 100.0 1.7E-30 3.7E-35 223.7 17.8 184 89-282 2-210 (215)
14 COG0625 Gst Glutathione S-tran 100.0 9.5E-30 2.1E-34 218.7 18.5 176 90-277 1-199 (211)
15 PRK11752 putative S-transferas 100.0 4.8E-29 1E-33 221.3 20.1 189 86-283 41-259 (264)
16 PTZ00057 glutathione s-transfe 100.0 3.4E-27 7.3E-32 202.0 17.7 184 88-283 3-200 (205)
17 PRK10387 glutaredoxin 2; Provi 100.0 2.5E-27 5.3E-32 203.3 16.6 170 90-277 1-208 (210)
18 KOG0867 Glutathione S-transfer 99.9 2.3E-26 4.9E-31 199.5 17.0 188 89-285 2-212 (226)
19 TIGR02182 GRXB Glutaredoxin, G 99.9 1.6E-25 3.4E-30 192.2 16.8 168 91-276 1-206 (209)
20 KOG4420 Uncharacterized conser 99.9 1.6E-24 3.6E-29 183.0 15.2 198 88-290 25-295 (325)
21 KOG1422 Intracellular Cl- chan 99.9 5.4E-23 1.2E-27 169.3 17.1 195 96-293 19-216 (221)
22 KOG1695 Glutathione S-transfer 99.9 2E-22 4.4E-27 170.0 17.8 184 89-283 3-201 (206)
23 COG0435 ECM4 Predicted glutath 99.9 3.4E-22 7.4E-27 170.6 10.9 201 84-290 46-294 (324)
24 KOG2903 Predicted glutathione 99.9 5.5E-22 1.2E-26 167.8 8.7 210 65-282 17-288 (319)
25 PLN02907 glutamate-tRNA ligase 99.8 3.3E-20 7.1E-25 183.3 18.2 155 90-275 3-159 (722)
26 cd03055 GST_N_Omega GST_N fami 99.8 5.9E-19 1.3E-23 130.9 9.7 86 74-162 3-89 (89)
27 PF13417 GST_N_3: Glutathione 99.8 3.4E-19 7.4E-24 127.8 7.9 74 92-168 1-74 (75)
28 cd03061 GST_N_CLIC GST_N famil 99.8 9.8E-19 2.1E-23 128.9 8.4 70 96-168 20-89 (91)
29 cd03059 GST_N_SspA GST_N famil 99.8 4.8E-18 1E-22 120.9 8.8 73 90-165 1-73 (73)
30 cd03052 GST_N_GDAP1 GST_N fami 99.7 3.6E-18 7.9E-23 121.8 7.6 70 90-162 1-73 (73)
31 cd03058 GST_N_Tau GST_N family 99.7 8.7E-18 1.9E-22 120.1 8.4 73 90-165 1-74 (74)
32 cd03041 GST_N_2GST_N GST_N fam 99.7 1.1E-17 2.5E-22 120.5 8.1 74 89-165 1-77 (77)
33 cd03053 GST_N_Phi GST_N family 99.7 5.7E-17 1.2E-21 116.3 8.7 73 89-164 1-76 (76)
34 cd03045 GST_N_Delta_Epsilon GS 99.7 4.8E-17 1E-21 116.1 8.2 71 90-163 1-74 (74)
35 cd03060 GST_N_Omega_like GST_N 99.7 5.3E-17 1.1E-21 115.1 8.0 68 91-161 2-70 (71)
36 cd03048 GST_N_Ure2p_like GST_N 99.7 8.2E-17 1.8E-21 117.1 8.5 74 89-166 1-80 (81)
37 KOG3029 Glutathione S-transfer 99.7 5.8E-16 1.3E-20 132.7 14.7 174 89-273 90-355 (370)
38 cd03050 GST_N_Theta GST_N fami 99.7 1.1E-16 2.4E-21 114.9 8.5 73 90-165 1-76 (76)
39 cd03076 GST_N_Pi GST_N family, 99.7 8E-17 1.7E-21 114.8 7.0 72 90-164 2-73 (73)
40 PF13409 GST_N_2: Glutathione 99.7 1.4E-16 3E-21 112.7 7.2 67 97-164 1-70 (70)
41 cd03056 GST_N_4 GST_N family, 99.7 2.6E-16 5.6E-21 111.8 7.9 70 90-162 1-73 (73)
42 KOG4244 Failed axon connection 99.7 1.3E-15 2.9E-20 130.0 13.5 173 86-273 42-273 (281)
43 cd03049 GST_N_3 GST_N family, 99.7 2.2E-16 4.8E-21 112.4 7.3 70 90-162 1-73 (73)
44 cd03044 GST_N_EF1Bgamma GST_N 99.7 3.7E-16 8.1E-21 111.9 7.7 70 91-163 2-74 (75)
45 COG2999 GrxB Glutaredoxin 2 [P 99.7 1.3E-15 2.8E-20 122.4 11.3 170 90-276 1-207 (215)
46 cd03046 GST_N_GTT1_like GST_N 99.7 5.5E-16 1.2E-20 111.1 8.4 73 90-166 1-76 (76)
47 cd03037 GST_N_GRX2 GST_N famil 99.7 3.8E-16 8.2E-21 110.6 7.4 70 90-163 1-71 (71)
48 cd03039 GST_N_Sigma_like GST_N 99.7 3.1E-16 6.7E-21 111.4 6.9 71 90-163 1-72 (72)
49 cd03203 GST_C_Lambda GST_C fam 99.6 2.2E-15 4.7E-20 118.0 12.1 118 174-291 1-120 (120)
50 cd03051 GST_N_GTT2_like GST_N 99.6 4.2E-16 9E-21 110.9 7.1 70 90-162 1-74 (74)
51 cd03047 GST_N_2 GST_N family, 99.6 5.8E-16 1.3E-20 110.3 7.8 70 90-162 1-73 (73)
52 cd03057 GST_N_Beta GST_N famil 99.6 6.6E-16 1.4E-20 111.1 7.9 73 90-166 1-77 (77)
53 cd03042 GST_N_Zeta GST_N famil 99.6 8.3E-16 1.8E-20 109.2 7.5 70 90-162 1-73 (73)
54 cd03080 GST_N_Metaxin_like GST 99.6 1.4E-15 3.1E-20 108.9 8.7 68 89-166 1-75 (75)
55 cd03040 GST_N_mPGES2 GST_N fam 99.6 1.2E-15 2.7E-20 109.7 7.6 72 89-165 1-76 (77)
56 cd03075 GST_N_Mu GST_N family, 99.6 6.2E-15 1.4E-19 107.4 7.6 73 91-165 2-82 (82)
57 PF02798 GST_N: Glutathione S- 99.6 1E-14 2.2E-19 104.8 8.4 71 90-163 1-76 (76)
58 cd03038 GST_N_etherase_LigE GS 99.6 7.5E-15 1.6E-19 107.5 7.4 67 96-166 14-84 (84)
59 cd03077 GST_N_Alpha GST_N fami 99.6 1.1E-14 2.5E-19 105.3 8.1 72 89-166 1-77 (79)
60 cd03043 GST_N_1 GST_N family, 99.5 2E-14 4.3E-19 102.4 7.4 65 95-162 7-73 (73)
61 cd03184 GST_C_Omega GST_C fami 99.5 9.9E-14 2.1E-18 109.1 11.1 115 177-292 2-123 (124)
62 cd00570 GST_N_family Glutathio 99.5 5.2E-14 1.1E-18 98.1 7.8 70 90-162 1-71 (71)
63 cd03190 GST_C_ECM4_like GST_C 99.5 1.1E-13 2.4E-18 111.5 10.7 117 176-295 3-131 (142)
64 cd03201 GST_C_DHAR GST_C famil 99.5 2.8E-13 6E-18 106.1 11.3 87 204-292 33-120 (121)
65 cd03185 GST_C_Tau GST_C family 99.5 7E-13 1.5E-17 104.2 12.1 113 176-292 2-125 (126)
66 cd03054 GST_N_Metaxin GST_N fa 99.5 2E-13 4.3E-18 96.9 8.1 58 97-164 15-72 (72)
67 cd03198 GST_C_CLIC GST_C famil 99.5 4.8E-13 1E-17 106.0 10.7 88 204-291 32-133 (134)
68 cd03186 GST_C_SspA GST_N famil 99.4 1.5E-12 3.3E-17 99.4 10.6 96 176-279 2-106 (107)
69 cd03196 GST_C_5 GST_C family, 99.4 5.1E-12 1.1E-16 98.1 10.6 102 173-280 2-115 (115)
70 cd03209 GST_C_Mu GST_C family, 99.3 9.1E-12 2E-16 97.4 9.8 100 177-284 2-111 (121)
71 cd03210 GST_C_Pi GST_C family, 99.3 1.5E-11 3.3E-16 96.9 9.9 102 177-283 3-113 (126)
72 cd03208 GST_C_Alpha GST_C fami 99.3 3.1E-11 6.6E-16 96.7 10.4 101 177-283 3-116 (137)
73 cd03200 GST_C_JTV1 GST_C famil 99.3 5.3E-11 1.2E-15 89.3 10.6 93 158-272 1-95 (96)
74 cd03188 GST_C_Beta GST_C famil 99.3 1.9E-11 4.2E-16 94.0 8.4 95 177-280 2-114 (114)
75 cd03182 GST_C_GTT2_like GST_C 99.3 7.6E-11 1.6E-15 91.3 11.2 95 174-276 1-117 (117)
76 cd03079 GST_N_Metaxin2 GST_N f 99.2 3E-11 6.5E-16 85.6 6.8 65 89-164 10-74 (74)
77 cd03187 GST_C_Phi GST_C family 99.2 9.3E-11 2E-15 90.8 8.7 70 204-280 48-118 (118)
78 cd03189 GST_C_GTT1_like GST_C 99.2 3E-10 6.5E-15 88.2 11.5 94 172-274 2-119 (119)
79 cd03191 GST_C_Zeta GST_C famil 99.2 1.1E-10 2.3E-15 91.1 8.3 100 176-282 2-119 (121)
80 cd03177 GST_C_Delta_Epsilon GS 99.2 1.9E-10 4.2E-15 89.3 9.6 97 177-281 2-111 (118)
81 cd03178 GST_C_Ure2p_like GST_C 99.2 7.9E-11 1.7E-15 90.6 7.1 69 204-280 43-112 (113)
82 PF00043 GST_C: Glutathione S- 99.2 1.5E-10 3.3E-15 86.1 8.3 63 204-274 31-95 (95)
83 cd03207 GST_C_8 GST_C family, 99.1 9.3E-11 2E-15 88.8 6.7 69 204-282 33-102 (103)
84 cd03183 GST_C_Theta GST_C fami 99.1 1.9E-10 4E-15 90.4 8.4 70 204-280 48-120 (126)
85 KOG3027 Mitochondrial outer me 99.1 1.1E-09 2.4E-14 90.5 13.0 170 86-272 25-247 (257)
86 cd03181 GST_C_EFB1gamma GST_C 99.1 1.3E-10 2.8E-15 90.7 7.1 102 177-284 1-118 (123)
87 cd03195 GST_C_4 GST_C family, 99.1 5E-10 1.1E-14 86.7 9.9 96 176-281 2-112 (114)
88 cd03180 GST_C_2 GST_C family, 99.1 7.5E-10 1.6E-14 84.5 10.5 64 204-276 46-110 (110)
89 TIGR02190 GlrX-dom Glutaredoxi 99.1 5.1E-10 1.1E-14 80.8 8.3 74 86-162 6-79 (79)
90 PF13410 GST_C_2: Glutathione 99.1 6.2E-10 1.3E-14 78.0 6.9 60 204-269 9-69 (69)
91 cd03204 GST_C_GDAP1 GST_C fami 99.0 7.6E-10 1.6E-14 85.0 7.9 68 204-276 32-111 (111)
92 cd03206 GST_C_7 GST_C family, 98.9 3.1E-09 6.8E-14 80.0 7.5 64 204-276 36-100 (100)
93 cd03078 GST_N_Metaxin1_like GS 98.9 5.3E-09 1.2E-13 74.2 8.2 58 97-164 15-72 (73)
94 cd03194 GST_C_3 GST_C family, 98.9 8.6E-09 1.9E-13 79.8 9.2 70 204-281 44-113 (114)
95 cd03192 GST_C_Sigma_like GST_C 98.9 6.8E-09 1.5E-13 78.6 8.0 88 177-270 2-104 (104)
96 PRK10638 glutaredoxin 3; Provi 98.9 1E-08 2.2E-13 74.7 8.0 72 89-163 3-75 (83)
97 cd03029 GRX_hybridPRX5 Glutare 98.9 1.2E-08 2.6E-13 72.1 7.9 71 89-162 2-72 (72)
98 PF14497 GST_C_3: Glutathione 98.9 5.3E-09 1.1E-13 78.7 6.1 61 204-272 38-99 (99)
99 cd03202 GST_C_etherase_LigE GS 98.8 9.6E-09 2.1E-13 80.7 7.3 62 204-272 61-123 (124)
100 cd03179 GST_C_1 GST_C family, 98.8 7.1E-09 1.5E-13 78.4 6.4 59 204-271 46-105 (105)
101 cd03027 GRX_DEP Glutaredoxin ( 98.7 6.7E-08 1.5E-12 68.5 7.2 69 88-159 1-70 (73)
102 cd03193 GST_C_Metaxin GST_C fa 98.7 4.4E-08 9.6E-13 71.9 6.4 64 204-271 22-88 (88)
103 KOG3028 Translocase of outer m 98.7 1.2E-06 2.6E-11 77.4 15.6 162 97-272 16-233 (313)
104 PF14834 GST_C_4: Glutathione 98.7 2.1E-07 4.5E-12 70.5 9.2 97 174-280 1-112 (117)
105 cd00299 GST_C_family Glutathio 98.6 7.6E-08 1.6E-12 71.5 6.5 61 204-270 39-100 (100)
106 TIGR02196 GlrX_YruB Glutaredox 98.6 2.1E-07 4.6E-12 65.2 7.0 70 89-161 1-73 (74)
107 cd02066 GRX_family Glutaredoxi 98.6 3.2E-07 6.9E-12 63.9 7.3 68 90-160 2-70 (72)
108 PRK10329 glutaredoxin-like pro 98.5 2.9E-07 6.3E-12 66.7 6.9 61 89-152 2-62 (81)
109 cd02976 NrdH NrdH-redoxin (Nrd 98.5 3.6E-07 7.8E-12 63.9 6.1 62 89-153 1-63 (73)
110 cd03211 GST_C_Metaxin2 GST_C f 98.4 2.5E-07 5.5E-12 72.8 4.4 64 204-271 60-126 (126)
111 TIGR02200 GlrX_actino Glutared 98.4 1.3E-06 2.9E-11 62.0 7.4 71 89-162 1-76 (77)
112 cd03418 GRX_GRXb_1_3_like Glut 98.4 1.5E-06 3.3E-11 61.5 7.6 71 89-162 1-73 (75)
113 cd03197 GST_C_mPGES2 GST_C fam 98.4 8.2E-07 1.8E-11 71.2 6.5 62 204-272 82-145 (149)
114 cd03205 GST_C_6 GST_C family, 98.3 1.9E-06 4.1E-11 64.5 7.3 58 204-270 40-98 (98)
115 COG0695 GrxC Glutaredoxin and 98.3 4.9E-06 1.1E-10 60.1 8.1 72 89-162 2-75 (80)
116 PRK11200 grxA glutaredoxin 1; 98.3 4.7E-06 1E-10 60.8 8.0 75 89-166 2-84 (85)
117 cd03212 GST_C_Metaxin1_3 GST_C 98.3 1.2E-06 2.5E-11 70.1 4.6 66 204-272 67-134 (137)
118 TIGR02183 GRXA Glutaredoxin, G 98.2 7.3E-06 1.6E-10 60.0 7.9 76 90-166 2-83 (86)
119 TIGR02181 GRX_bact Glutaredoxi 98.2 5.6E-06 1.2E-10 59.4 7.0 72 90-164 1-73 (79)
120 cd03419 GRX_GRXh_1_2_like Glut 98.2 1.4E-05 3.1E-10 57.4 8.4 72 90-164 2-77 (82)
121 TIGR02194 GlrX_NrdH Glutaredox 98.2 4.8E-06 1E-10 58.8 5.6 56 90-149 1-57 (72)
122 PF00462 Glutaredoxin: Glutare 98.1 3.9E-06 8.5E-11 56.9 4.7 59 90-151 1-60 (60)
123 PHA03050 glutaredoxin; Provisi 98.1 2.1E-05 4.6E-10 60.1 8.5 72 87-159 12-88 (108)
124 TIGR02189 GlrX-like_plant Glut 98.1 2.8E-05 6E-10 58.5 9.0 73 87-162 7-83 (99)
125 TIGR02180 GRX_euk Glutaredoxin 97.9 7E-05 1.5E-09 53.9 8.3 73 90-163 1-77 (84)
126 TIGR00365 monothiol glutaredox 97.9 8.9E-05 1.9E-09 55.5 7.9 73 87-162 11-89 (97)
127 cd03028 GRX_PICOT_like Glutare 97.7 0.00021 4.6E-09 52.6 7.8 72 88-162 8-85 (90)
128 PF10568 Tom37: Outer mitochon 97.7 0.0002 4.3E-09 50.5 7.0 57 97-161 13-71 (72)
129 PRK10824 glutaredoxin-4; Provi 97.1 0.0028 6E-08 48.9 7.6 72 88-162 15-92 (115)
130 cd03199 GST_C_GRX2 GST_C famil 97.0 0.0045 9.9E-08 48.5 8.4 63 204-276 63-125 (128)
131 cd03031 GRX_GRX_like Glutaredo 97.0 0.003 6.5E-08 50.9 7.6 71 89-162 1-82 (147)
132 PRK12759 bifunctional gluaredo 97.0 0.0032 7E-08 59.5 8.2 69 89-159 3-79 (410)
133 PF04399 Glutaredoxin2_C: Glut 96.8 0.0038 8.2E-08 49.3 6.0 62 204-275 62-123 (132)
134 KOG1752 Glutaredoxin and relat 96.7 0.015 3.2E-07 44.0 8.7 74 87-162 13-89 (104)
135 PTZ00062 glutaredoxin; Provisi 96.3 0.021 4.6E-07 48.6 8.2 71 88-161 113-189 (204)
136 cd02973 TRX_GRX_like Thioredox 96.3 0.015 3.2E-07 39.8 6.0 62 89-152 2-64 (67)
137 PF05768 DUF836: Glutaredoxin- 96.0 0.032 7E-07 40.0 6.8 57 89-148 1-57 (81)
138 PRK01655 spxA transcriptional 95.8 0.015 3.3E-07 45.9 4.6 33 89-123 1-33 (131)
139 cd03032 ArsC_Spx Arsenate Redu 95.7 0.019 4.1E-07 44.3 4.8 33 89-123 1-33 (115)
140 cd03036 ArsC_like Arsenate Red 95.7 0.016 3.6E-07 44.3 4.1 32 90-123 1-32 (111)
141 cd02977 ArsC_family Arsenate R 95.4 0.023 4.9E-07 42.9 4.1 32 90-123 1-32 (105)
142 KOG1147 Glutamyl-tRNA syntheta 95.1 0.015 3.3E-07 55.3 2.8 106 146-268 43-150 (712)
143 PRK12559 transcriptional regul 95.0 0.042 9.2E-07 43.4 4.7 33 89-123 1-33 (131)
144 PRK13344 spxA transcriptional 95.0 0.045 9.7E-07 43.3 4.7 33 89-123 1-33 (132)
145 TIGR01617 arsC_related transcr 94.7 0.049 1.1E-06 42.0 4.2 32 90-123 1-32 (117)
146 COG1393 ArsC Arsenate reductas 94.2 0.089 1.9E-06 40.7 4.6 29 88-116 1-29 (117)
147 cd03035 ArsC_Yffb Arsenate Red 94.1 0.084 1.8E-06 40.0 4.2 32 90-123 1-32 (105)
148 cd03033 ArsC_15kD Arsenate Red 93.8 0.11 2.3E-06 40.0 4.4 31 90-122 2-32 (113)
149 TIGR00411 redox_disulf_1 small 93.2 0.38 8.3E-06 33.8 6.3 57 89-149 2-62 (82)
150 PRK10853 putative reductase; P 93.0 0.16 3.4E-06 39.4 4.2 32 89-122 1-32 (118)
151 COG4545 Glutaredoxin-related p 93.0 0.38 8.3E-06 33.7 5.6 62 89-152 3-77 (85)
152 TIGR00412 redox_disulf_2 small 92.9 0.64 1.4E-05 32.7 6.9 56 89-152 2-61 (76)
153 COG0278 Glutaredoxin-related p 92.8 0.39 8.6E-06 35.7 5.8 65 96-163 28-94 (105)
154 cd03026 AhpF_NTD_C TRX-GRX-lik 92.7 0.23 5E-06 36.3 4.6 62 89-152 15-77 (89)
155 cd01659 TRX_superfamily Thiore 92.4 0.33 7E-06 31.1 4.7 54 90-146 1-59 (69)
156 TIGR01616 nitro_assoc nitrogen 92.2 0.24 5.3E-06 38.8 4.4 32 89-122 2-33 (126)
157 PRK10026 arsenate reductase; P 92.0 0.26 5.7E-06 39.4 4.3 32 89-122 3-34 (141)
158 cd03030 GRX_SH3BGR Glutaredoxi 90.8 1 2.2E-05 33.2 6.2 67 90-159 2-79 (92)
159 PHA02125 thioredoxin-like prot 90.4 0.86 1.9E-05 31.9 5.3 52 89-146 1-52 (75)
160 cd03034 ArsC_ArsC Arsenate Red 90.3 0.46 1E-05 36.3 4.2 31 90-122 1-31 (112)
161 TIGR00014 arsC arsenate reduct 90.3 0.46 1E-05 36.4 4.2 31 90-122 1-31 (114)
162 PF11287 DUF3088: Protein of u 88.7 1.4 3.1E-05 33.5 5.6 70 97-166 23-108 (112)
163 PF13192 Thioredoxin_3: Thiore 84.3 2.3 5.1E-05 29.8 4.6 58 89-154 2-63 (76)
164 PF11801 Tom37_C: Tom37 C-term 83.9 3 6.5E-05 34.4 5.7 42 204-245 111-154 (168)
165 PF04908 SH3BGR: SH3-binding, 77.3 11 0.00024 28.2 6.2 72 89-162 2-88 (99)
166 PF03960 ArsC: ArsC family; I 74.3 4.6 0.0001 30.5 3.7 28 93-122 1-28 (110)
167 KOG0911 Glutaredoxin-related p 73.5 9.3 0.0002 32.8 5.6 65 96-163 152-217 (227)
168 PF00085 Thioredoxin: Thioredo 72.5 19 0.00041 25.8 6.6 70 89-163 20-102 (103)
169 TIGR01295 PedC_BrcD bacterioci 72.2 11 0.00023 29.2 5.4 59 90-150 27-102 (122)
170 cd02984 TRX_PICOT TRX domain, 71.6 25 0.00053 25.2 7.0 60 90-151 18-81 (97)
171 cd02949 TRX_NTR TRX domain, no 65.6 19 0.00041 26.1 5.3 61 89-151 16-80 (97)
172 TIGR03140 AhpF alkyl hydropero 65.3 9.8 0.00021 37.1 4.7 75 88-164 119-198 (515)
173 KOG3425 Uncharacterized conser 64.3 20 0.00044 27.7 5.2 66 96-164 43-122 (128)
174 PF09635 MetRS-N: MetRS-N bind 64.1 3.8 8.2E-05 31.7 1.2 33 135-167 30-64 (122)
175 TIGR03143 AhpF_homolog putativ 63.1 12 0.00026 37.0 4.8 59 89-153 479-542 (555)
176 PRK15317 alkyl hydroperoxide r 60.4 14 0.00029 36.1 4.7 75 88-164 118-197 (517)
177 TIGR02187 GlrX_arch Glutaredox 58.1 31 0.00066 29.4 6.0 56 89-146 136-192 (215)
178 cd02989 Phd_like_TxnDC9 Phosdu 57.3 35 0.00075 25.8 5.6 62 89-153 25-90 (113)
179 cd02947 TRX_family TRX family; 55.1 64 0.0014 21.9 7.0 58 90-149 14-74 (93)
180 PRK10996 thioredoxin 2; Provis 54.4 1E+02 0.0022 24.1 8.1 61 89-151 55-119 (139)
181 cd02953 DsbDgamma DsbD gamma f 53.3 42 0.00092 24.4 5.4 53 89-145 14-77 (104)
182 TIGR01068 thioredoxin thioredo 53.2 58 0.0013 23.0 6.1 58 90-149 18-79 (101)
183 cd02975 PfPDO_like_N Pyrococcu 52.2 43 0.00093 25.2 5.4 54 90-145 25-80 (113)
184 PF04134 DUF393: Protein of un 51.3 55 0.0012 24.4 5.9 71 92-164 1-77 (114)
185 cd02959 ERp19 Endoplasmic reti 49.9 34 0.00074 26.1 4.5 61 90-152 23-91 (117)
186 PF06110 DUF953: Eukaryotic pr 45.2 9.7 0.00021 29.5 0.8 60 96-155 36-106 (119)
187 KOG1668 Elongation factor 1 be 44.7 17 0.00038 31.3 2.3 55 207-274 10-65 (231)
188 cd02962 TMX2 TMX2 family; comp 43.7 74 0.0016 25.6 5.7 62 90-152 51-122 (152)
189 PTZ00051 thioredoxin; Provisio 41.9 68 0.0015 22.8 4.9 59 90-150 22-83 (98)
190 cd02956 ybbN ybbN protein fami 40.1 96 0.0021 22.0 5.5 59 90-150 16-78 (96)
191 PHA02278 thioredoxin-like prot 39.5 1.6E+02 0.0034 21.9 6.6 61 90-151 18-85 (103)
192 cd02954 DIM1 Dim1 family; Dim1 37.9 1.4E+02 0.003 22.8 6.1 60 90-151 18-81 (114)
193 cd02957 Phd_like Phosducin (Ph 37.6 91 0.002 23.2 5.2 63 90-155 28-93 (113)
194 cd02963 TRX_DnaJ TRX domain, D 37.6 1.4E+02 0.003 22.2 6.2 57 90-150 28-91 (111)
195 COG5515 Uncharacterized conser 37.4 30 0.00065 23.2 2.0 22 89-110 2-27 (70)
196 COG3011 Predicted thiol-disulf 36.9 2.1E+02 0.0046 22.7 7.9 78 86-165 6-87 (137)
197 cd02948 TRX_NDPK TRX domain, T 36.4 1.7E+02 0.0036 21.3 6.7 58 90-150 21-83 (102)
198 PRK09381 trxA thioredoxin; Pro 34.5 1.8E+02 0.0039 21.1 8.4 59 89-151 24-88 (109)
199 cd02951 SoxW SoxW family; SoxW 34.2 1.3E+02 0.0028 22.6 5.7 17 89-105 17-33 (125)
200 cd02993 PDI_a_APS_reductase PD 32.6 2E+02 0.0044 21.1 6.3 55 89-145 24-83 (109)
201 TIGR02681 phage_pRha phage reg 30.8 43 0.00093 25.4 2.3 26 141-166 2-28 (108)
202 cd03003 PDI_a_ERdj5_N PDIa fam 29.0 1.4E+02 0.003 21.5 4.8 59 89-149 21-83 (101)
203 PF13728 TraF: F plasmid trans 28.8 97 0.0021 26.5 4.4 53 90-145 124-188 (215)
204 PTZ00102 disulphide isomerase; 28.4 3.1E+02 0.0068 26.0 8.4 76 89-166 52-139 (477)
205 PF01323 DSBA: DSBA-like thior 28.3 85 0.0019 25.5 4.0 35 89-125 1-40 (193)
206 cd02952 TRP14_like Human TRX-r 28.2 1.4E+02 0.003 23.0 4.7 58 96-153 38-105 (119)
207 TIGR02187 GlrX_arch Glutaredox 27.9 2E+02 0.0044 24.2 6.3 60 89-150 22-89 (215)
208 PHA03075 glutaredoxin-like pro 27.8 64 0.0014 24.8 2.7 68 87-165 2-70 (123)
209 cd02987 Phd_like_Phd Phosducin 27.8 1.8E+02 0.004 23.8 5.8 61 90-154 87-151 (175)
210 COG2761 FrnE Predicted dithiol 26.9 1.4E+02 0.0031 25.8 5.0 60 87-166 5-68 (225)
211 cd02997 PDI_a_PDIR PDIa family 25.4 1.5E+02 0.0032 21.1 4.4 55 89-145 20-80 (104)
212 PRK11657 dsbG disulfide isomer 24.7 1.3E+02 0.0027 26.4 4.5 22 88-109 119-140 (251)
213 cd02999 PDI_a_ERp44_like PDIa 23.8 1.5E+02 0.0033 21.6 4.2 56 89-145 21-77 (100)
214 cd03020 DsbA_DsbC_DsbG DsbA fa 23.7 1.6E+02 0.0035 24.3 4.9 24 87-110 78-101 (197)
215 cd02972 DsbA_family DsbA famil 23.5 1.3E+02 0.0028 20.7 3.7 22 90-111 1-22 (98)
216 PF13098 Thioredoxin_2: Thiore 23.3 92 0.002 22.8 3.0 21 89-109 8-28 (112)
217 cd03001 PDI_a_P5 PDIa family, 23.3 2.2E+02 0.0047 20.2 5.0 54 90-145 22-77 (103)
218 TIGR01130 ER_PDI_fam protein d 23.2 4.1E+02 0.009 24.8 8.1 76 89-166 21-110 (462)
219 cd03004 PDI_a_ERdj5_C PDIa fam 23.1 1.5E+02 0.0032 21.3 4.1 55 89-145 22-78 (104)
220 PHA00159 endonuclease I 23.1 2.8E+02 0.006 22.1 5.5 68 95-167 14-87 (148)
221 TIGR01764 excise DNA binding d 22.5 1.2E+02 0.0026 18.2 3.0 26 137-162 23-48 (49)
222 cd02950 TxlA TRX-like protein 22.4 1.9E+02 0.0042 22.6 4.8 61 90-151 24-90 (142)
223 cd03006 PDI_a_EFP1_N PDIa fami 22.3 2.3E+02 0.0049 21.4 5.0 56 89-145 32-89 (113)
224 cd02985 TRX_CDSP32 TRX family, 22.2 3.1E+02 0.0067 19.8 5.7 61 90-151 19-84 (103)
225 cd03005 PDI_a_ERp46 PDIa famil 21.9 1.8E+02 0.0039 20.6 4.3 59 89-149 19-84 (102)
226 PF04564 U-box: U-box domain; 21.6 1E+02 0.0022 21.2 2.7 25 140-165 15-39 (73)
227 cd02998 PDI_a_ERp38 PDIa famil 21.5 1.7E+02 0.0038 20.7 4.2 55 89-145 21-80 (105)
228 TIGR01126 pdi_dom protein disu 21.2 1.5E+02 0.0033 20.8 3.8 55 88-145 15-74 (102)
229 PTZ00443 Thioredoxin domain-co 20.3 5.6E+02 0.012 22.0 10.8 76 89-166 55-140 (224)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-38 Score=267.83 Aligned_cols=207 Identities=33% Similarity=0.509 Sum_probs=181.6
Q ss_pred CCCcEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcC-CCCCccEEeeCCeeecCcHHHHHHHHhh
Q 022381 86 FDGTTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVH-LANKVPSLEHNNEVKGESLDLMKFIDSH 164 (298)
Q Consensus 86 ~~~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~n-P~gkvP~L~~~g~~l~eS~aI~~yL~~~ 164 (298)
++|.++||++..|||++|++++|++|||+ |+++++|+.++++|+++ .| +.+|||||+|+|+.|+||..|++|||+.
T Consensus 6 ~~~~vrL~~~w~sPfa~R~~iaL~~KgI~--yE~veedl~~Ks~~ll~-~np~hkKVPvL~Hn~k~i~ESliiveYiDe~ 82 (231)
T KOG0406|consen 6 EDGTVKLLGMWFSPFAQRVRIALKLKGIP--YEYVEEDLTNKSEWLLE-KNPVHKKVPVLEHNGKPICESLIIVEYIDET 82 (231)
T ss_pred CCCeEEEEEeecChHHHHHHHHHHhcCCc--eEEEecCCCCCCHHHHH-hccccccCCEEEECCceehhhHHHHHHHHhh
Confidence 56899999999999999999999999999 89999999999999998 99 6899999999999999999999999999
Q ss_pred CC-CCCCCCCCHHhHHHHHHHHHHHhHh---HHHHHhhccC-Ch-----HHHHHHHHHHHHHHhccCCCCcccCC-CCHH
Q 022381 165 FE-GPSLFPDDPAKREFAEELFSYTDTF---NKTVRSSLQG-DG-----NEASAAFDYLETALSKFNDGPFLLGH-FSIA 233 (298)
Q Consensus 165 ~~-~~~L~p~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~-~~-----~~~~~~L~~le~~L~~~~~~~fl~G~-~T~A 233 (298)
++ +++++|.||.+|++++.|..+++.- ....+....+ +. +++.+.|+.||+.|.+ +++|+.|+ ++++
T Consensus 83 w~~~~~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k--~k~~fgG~~~G~v 160 (231)
T KOG0406|consen 83 WPSGPPILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGK--GKDFFGGETIGFV 160 (231)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhc--CCCCCCCCCcCHh
Confidence 99 6999999999999999999999942 2222222222 32 6689999999999995 79999999 9999
Q ss_pred HHHHHHHHHHHhhhhhhhcc--CCCCCCChHHHHHHHHHhcCcccccccCChHHHHHHHHHHhhhc
Q 022381 234 DIAYAPFIERYQPFLLEVKK--NDITAGRPKLAAWIEEMNKNEAFNQTRRDPKELVETYKKRFAAK 297 (298)
Q Consensus 234 Di~l~~~l~~~~~~~~~~~~--~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 297 (298)
|+++++++.++........+ .....++|+|.+|.+||.++|+|++++++.+++++++++++..+
T Consensus 161 Di~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~~~~ 226 (231)
T KOG0406|consen 161 DIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYRQGS 226 (231)
T ss_pred hhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHHHhc
Confidence 99999888888776555442 23347899999999999999999999999999999999988753
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=2.4e-35 Score=253.56 Aligned_cols=187 Identities=18% Similarity=0.341 Sum_probs=157.0
Q ss_pred CcEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhhCCC
Q 022381 88 GTTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHFEG 167 (298)
Q Consensus 88 ~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~~~~ 167 (298)
++|+||+++.||+|+||+++|+++||+ |+.+.++..+++++|++ +||.|+||+|++||.+|+||.||++||+++||+
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~--~e~~~v~~~~~~~~~~~-~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~ 85 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVS--VEIEQVEKDNLPQDLID-LNPYQSVPTLVDRELTLYESRIIMEYLDERFPH 85 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCC--CEEEeCCcccCCHHHHH-hCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCC
Confidence 369999999999999999999999999 77888888888889998 999999999999999999999999999999998
Q ss_pred CCCCCCCHHhHHHHHHHHHHHhHhHHHHHhhc-cCCh-------HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHH
Q 022381 168 PSLFPDDPAKREFAEELFSYTDTFNKTVRSSL-QGDG-------NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYA 238 (298)
Q Consensus 168 ~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~ 238 (298)
..|+|.++.+++.+++|..++..........+ .++. +.+.+.++.+|+.|+ +++|++|+ +|+||++++
T Consensus 86 ~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~---~~~~l~G~~~t~AD~~l~ 162 (211)
T PRK09481 86 PPLMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFG---EKPYFMSEEFSLVDCYLA 162 (211)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhc---cCCcccCCCccHHHHHHH
Confidence 88999999999999999877653222222111 2211 557788899999998 68999999 999999999
Q ss_pred HHHHHHhhhhhhhccCCCC-CCChHHHHHHHHHhcCcccccccCChHH
Q 022381 239 PFIERYQPFLLEVKKNDIT-AGRPKLAAWIEEMNKNEAFNQTRRDPKE 285 (298)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~-~~~p~L~~w~~r~~~~p~~~~~~~~~~~ 285 (298)
+++.++... +.++. ..+|+|++|+++|.+||+|++++...+.
T Consensus 163 ~~~~~~~~~-----~~~~~~~~~p~l~~w~~~~~~rp~~~~~~~~~~~ 205 (211)
T PRK09481 163 PLLWRLPVL-----GIELSGPGAKELKGYMTRVFERDSFLASLTEAER 205 (211)
T ss_pred HHHHHHHhc-----CCCCCCCCChhHHHHHHHHhccHHHHHHcCHHHH
Confidence 999776532 34443 5799999999999999999999876544
No 3
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=3.7e-32 Score=235.73 Aligned_cols=192 Identities=21% Similarity=0.319 Sum_probs=156.2
Q ss_pred CCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhhCCC---CCCCC
Q 022381 96 YTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHFEG---PSLFP 172 (298)
Q Consensus 96 ~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~~~~---~~L~p 172 (298)
+.||||+||+++|+++||+ |+++.+|+.+++++|++ +||.|+||+|+++|.+|+||.+|++||++.|+. +.+.|
T Consensus 17 ~~cp~~~rv~i~L~ekgi~--~e~~~vd~~~~~~~fl~-inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p 93 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVV--FNVTTVDLKRKPEDLQN-LAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSP 93 (236)
T ss_pred CCCHhHHHHHHHHHHcCCC--cEEEEECCCCCCHHHHH-HCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCC
Confidence 5799999999999999999 78888999888899998 999999999999999999999999999999975 45666
Q ss_pred CCHHhHHHHHHHHHHHhHhHHHHHhhccCCh-----HHHHHHHHHHHHHHhcc---------------CCCCcccCC-CC
Q 022381 173 DDPAKREFAEELFSYTDTFNKTVRSSLQGDG-----NEASAAFDYLETALSKF---------------NDGPFLLGH-FS 231 (298)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~~le~~L~~~---------------~~~~fl~G~-~T 231 (298)
.++..++.... +...+.. +...-.+.. +++.+.|+.||+.|... ++++|+.|+ +|
T Consensus 94 ~~~~~~~~~~~---l~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~t 169 (236)
T TIGR00862 94 KHPESNTAGLD---IFAKFSA-YIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDELT 169 (236)
T ss_pred CCHHHHHHHHH---HHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCCccc
Confidence 66665553221 1121111 111111111 45788999999999731 157999999 99
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCChHHHHHHHHHHh
Q 022381 232 IADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDPKELVETYKKRF 294 (298)
Q Consensus 232 ~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~~~~~~~~~~~~ 294 (298)
+|||++++++.++..+..+..++++.+++|+|.+|++++.++|+|+++++..++++..|++++
T Consensus 170 laD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~~~~~~ 232 (236)
T TIGR00862 170 LADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAYADVA 232 (236)
T ss_pred hhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHHhccchHHhhCCChHHHHHHHHHHh
Confidence 999999999999987655566788778999999999999999999999999999999999875
No 4
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=2.3e-32 Score=235.31 Aligned_cols=186 Identities=17% Similarity=0.271 Sum_probs=148.6
Q ss_pred CcEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC---CCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhh
Q 022381 88 GTTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ---NRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSH 164 (298)
Q Consensus 88 ~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~---~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~ 164 (298)
+.|+||+++.||+++||+++|+++||+ |+.+.++.. .+.+++++ +||.|+||+|++||.+|+||.+|++||+++
T Consensus 1 ~~~kLy~~~~s~~~~rv~~~L~e~gi~--ye~~~v~~~~~~~~~~~~~~-~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~ 77 (214)
T PLN02473 1 MVVKVYGQIKAANPQRVLLCFLEKGIE--FEVIHVDLDKLEQKKPEHLL-RQPFGQVPAIEDGDLKLFESRAIARYYATK 77 (214)
T ss_pred CceEEecCCCCCchHHHHHHHHHcCCC--ceEEEecCcccccCCHHHHh-hCCCCCCCeEEECCEEEEehHHHHHHHHHH
Confidence 368999999999999999999999999 666666653 45677887 999999999999999999999999999999
Q ss_pred CCCC--CCCCCCHHhHHHHHHHHHHHhHhHHH---------HHhhccCC----h------HHHHHHHHHHHHHHhccCCC
Q 022381 165 FEGP--SLFPDDPAKREFAEELFSYTDTFNKT---------VRSSLQGD----G------NEASAAFDYLETALSKFNDG 223 (298)
Q Consensus 165 ~~~~--~L~p~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~----~------~~~~~~L~~le~~L~~~~~~ 223 (298)
+++. .|+|.++.+++++++|..+..+.... .+....++ . +++.+.|+.||+.|+ ++
T Consensus 78 ~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~ 154 (214)
T PLN02473 78 YADQGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLA---TN 154 (214)
T ss_pred cCCcCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhc---cC
Confidence 9743 69999999999999999877643321 11111111 1 456778999999998 57
Q ss_pred CcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCC
Q 022381 224 PFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRD 282 (298)
Q Consensus 224 ~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~ 282 (298)
+|++|+ +|+||+++++.+.++..... ..++.+++|+|.+|+++|.+||+|+++...
T Consensus 155 ~~l~Gd~~t~ADi~~~~~~~~~~~~~~---~~~~~~~~P~l~~w~~~~~~~p~~~~~~~~ 211 (214)
T PLN02473 155 RYLGGDEFTLADLTHMPGMRYIMNETS---LSGLVTSRENLNRWWNEISARPAWKKLMEL 211 (214)
T ss_pred CcccCCCCCHHHHHHHHHHHHHHhccc---cHHHHhcCHHHHHHHHHHhcChhhHHHHHH
Confidence 899999 99999999998877642211 112346899999999999999999988653
No 5
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=1.6e-31 Score=230.36 Aligned_cols=184 Identities=21% Similarity=0.337 Sum_probs=150.1
Q ss_pred CcEEEEecC--CChhHHHHHHHHHHcCCCcceeEeecCCCC---CchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHH
Q 022381 88 GTTRLYISY--TCPYAQRVWITRNCKGLQEKIKLVPIDLQN---RPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFID 162 (298)
Q Consensus 88 ~~~~Ly~~~--~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~---~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~ 162 (298)
.+|+||+.+ .||+|+||+++|+++||+ |+.+.++... +.++|++ +||.|+||+|++||.+|+||.||++||+
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~--~e~~~v~~~~~~~~~~~~~~-~nP~g~VP~L~~~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLP--FELKTVDLDAGEHLQPTYQG-YSLTRRVPTLQHDDFELSESSAIAEYLE 80 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCC--CeEEEeCCCCccccCHHHHh-cCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 358999975 699999999999999999 6777777643 4578997 9999999999999999999999999999
Q ss_pred hhCCCCC---CCCCCHHhHHHHHHHHHHHh-HhHHHHH--------hhccCCh------HHHHHHHHHHHHHHhccCCCC
Q 022381 163 SHFEGPS---LFPDDPAKREFAEELFSYTD-TFNKTVR--------SSLQGDG------NEASAAFDYLETALSKFNDGP 224 (298)
Q Consensus 163 ~~~~~~~---L~p~~~~~~a~~~~~~~~~~-~~~~~~~--------~~~~~~~------~~~~~~L~~le~~L~~~~~~~ 224 (298)
++|+++. |+|.++.+++++++|+.+++ ++..... .....+. +++.+.++.+|++|+. +++
T Consensus 81 ~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~ 158 (214)
T PRK15113 81 ERFAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAP--GQP 158 (214)
T ss_pred HHcCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhc--CCC
Confidence 9998765 99999999999999999886 4433211 0001111 6678899999999983 457
Q ss_pred cccCCCCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCChH
Q 022381 225 FLLGHFSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDPK 284 (298)
Q Consensus 225 fl~G~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~~ 284 (298)
|++|++|+||+++++++.++... +.++ .|+|.+|++||.+||+|++++...+
T Consensus 159 ~l~G~~TlADi~l~~~l~~~~~~-----~~~~---~p~l~~~~~r~~~rp~~~~~~~~~~ 210 (214)
T PRK15113 159 NLFGEWCIADTDLALMLNRLVLH-----GDEV---PERLADYATFQWQRASVQRWLALSA 210 (214)
T ss_pred EeeCCccHHHHHHHHHHHHHHHc-----CCCC---CHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 99889999999999999876522 3333 2999999999999999999886644
No 6
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.98 E-value=4.3e-31 Score=233.67 Aligned_cols=191 Identities=22% Similarity=0.443 Sum_probs=153.9
Q ss_pred CCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhhCCCCCCCCCCH
Q 022381 96 YTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHFEGPSLFPDDP 175 (298)
Q Consensus 96 ~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~~~~~~L~p~~~ 175 (298)
..|||++||+++|+++||+ |+.+.+++.++++||++ +||.|+||+|+++|.+|+||.+|++||+++|+++.|. ++
T Consensus 71 g~cp~s~rV~i~L~ekgi~--ye~~~vdl~~~~~~fl~-iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~~ 145 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLP--YDMKLVDLTNKPEWFLK-ISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--TP 145 (265)
T ss_pred CCCcHHHHHHHHHHHcCCC--CEEEEeCcCcCCHHHHh-hCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--CH
Confidence 4599999999999999999 77778888888999998 9999999999999999999999999999999987664 56
Q ss_pred HhHHHHHHHHHHHhHhHHHHHhhccCCh--HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhc
Q 022381 176 AKREFAEELFSYTDTFNKTVRSSLQGDG--NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVK 252 (298)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~ 252 (298)
.+++.++.++. ..+...+.....++. +++.+.|+.||+.|++ +++|++|+ +|+|||++++.+.++........
T Consensus 146 ~era~i~~~l~--~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~--~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~~~ 221 (265)
T PLN02817 146 PEKASVGSKIF--STFIGFLKSKDPGDGTEQALLDELTSFDDYIKE--NGPFINGEKISAADLSLGPKLYHLEIALGHYK 221 (265)
T ss_pred HHHHHHHHHHH--HHHHHHhccCCcchHHHHHHHHHHHHHHHHHhc--CCCeeCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 77887766532 222211111111111 5678889999999984 57999999 99999999999988765433233
Q ss_pred cCCCCCCChHHHHHHHHHhcCcccccccCChHHHHHHHHHHhh
Q 022381 253 KNDITAGRPKLAAWIEEMNKNEAFNQTRRDPKELVETYKKRFA 295 (298)
Q Consensus 253 ~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~~~~~~~~~~~~~ 295 (298)
++++.+.+|+|.+|+++|.++|+|+++.+..++.++.|..+.+
T Consensus 222 ~~~i~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~~~~~~~~~ 264 (265)
T PLN02817 222 NWSVPDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGWRPKVM 264 (265)
T ss_pred CCCccccCHHHHHHHHHHhcchhHhhcCCCHHHHHHHhHhhhc
Confidence 4455578999999999999999999999999999999987653
No 7
>PLN02378 glutathione S-transferase DHAR1
Probab=99.98 E-value=9.7e-31 Score=225.26 Aligned_cols=189 Identities=24% Similarity=0.419 Sum_probs=147.9
Q ss_pred cCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhhCCCCCCCCCC
Q 022381 95 SYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHFEGPSLFPDD 174 (298)
Q Consensus 95 ~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~~~~~~L~p~~ 174 (298)
++.||||+||+++|+++|++ |+.+.+++.+++++|++ +||.|+||+|++||.+|+||.+|++||+++|++..+. +
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~--~e~~~v~~~~~~~~~l~-inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~--~ 91 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLT--YKIHLINLSDKPQWFLD-ISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLK--T 91 (213)
T ss_pred CCCCcchHHHHHHHHHcCCC--CeEEEeCcccCCHHHHH-hCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCCC--C
Confidence 35699999999999999999 77888888888889998 9999999999999999999999999999999876663 5
Q ss_pred HHhHHHHHHHHHHHhHhHHHHHhhcc-CCh--HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhh
Q 022381 175 PAKREFAEELFSYTDTFNKTVRSSLQ-GDG--NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLE 250 (298)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~ 250 (298)
+.+++.++..+.. . ...++.... .+. +.+.+.|+.||+.|+. ++++|++|+ +|+||+++++++.++......
T Consensus 92 ~~~~a~i~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~~ 167 (213)
T PLN02378 92 PAEFASVGSNIFG--T-FGTFLKSKDSNDGSEHALLVELEALENHLKS-HDGPFIAGERVSAVDLSLAPKLYHLQVALGH 167 (213)
T ss_pred HHHHHHHHHHHHH--H-HHHHHhcCChhhHHHHHHHHHHHHHHHHHhc-CCCCCcCCCCCchhhHHHHHHHHHHHHHHHH
Confidence 6667766543221 1 111111111 111 5677889999999973 147899999 999999999999887643222
Q ss_pred hccCCCCCCChHHHHHHHHHhcCcccccccCChHHHHHHHHH
Q 022381 251 VKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDPKELVETYKK 292 (298)
Q Consensus 251 ~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~~~~~~~~~~ 292 (298)
..+.++.++||+|.+|+++|.+||+|+++++.+...+..|..
T Consensus 168 ~~~~~~~~~~p~l~~w~~~~~~rpa~~~~~~~~~~~~~~~~~ 209 (213)
T PLN02378 168 FKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVISGWAP 209 (213)
T ss_pred hcCCCchhHhHHHHHHHHHHhcCCCeecccCChHHHHHHHHh
Confidence 223344468999999999999999999999998887776654
No 8
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.97 E-value=4.1e-31 Score=225.24 Aligned_cols=180 Identities=21% Similarity=0.381 Sum_probs=145.0
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC----CCchhhhhhcCCCCCccEEe-eCCeeecCcHHHHHHHHhh
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ----NRPDWYMEKVHLANKVPSLE-HNNEVKGESLDLMKFIDSH 164 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~----~~~~~~~~~~nP~gkvP~L~-~~g~~l~eS~aI~~yL~~~ 164 (298)
|+||+...+ ++++++++|+++||+ |+.+.++.. .++++|++ +||.|+||+|+ +||.+|+||.+|++||+++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~--~e~~~v~~~~~~~~~~~~~~~-~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~ 76 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLD--FTLVSVDLAKKRLENGDDYLA-INPKGQVPALLLDDGTLLTEGVAIMQYLADS 76 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCC--ceEEEeecccccccCChHHHH-hCcCCCCCeEEeCCCcEeecHHHHHHHHHHh
Confidence 589998765 799999999999999 566666663 24578998 99999999998 6889999999999999999
Q ss_pred CCCCCCC-CCCHHhHHHHHHHHHHHh-HhHHHHHhhccCC---h------HHHHHHHHHHHHHHhccCCCCcccCC-CCH
Q 022381 165 FEGPSLF-PDDPAKREFAEELFSYTD-TFNKTVRSSLQGD---G------NEASAAFDYLETALSKFNDGPFLLGH-FSI 232 (298)
Q Consensus 165 ~~~~~L~-p~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~---~------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ 232 (298)
++++.++ |.++.+++++++|+.+.. .+...+...+.+. . +.+.+.|+.||+.|+ +++|++|+ +|+
T Consensus 77 ~~~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~s~ 153 (201)
T PRK10542 77 VPDRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALA---DEQWICGQRFTI 153 (201)
T ss_pred CcccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhc---CCCeeeCCCCcH
Confidence 9987766 667889999999988765 3443322222111 1 567888999999998 57899999 999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCC
Q 022381 233 ADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRD 282 (298)
Q Consensus 233 ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~ 282 (298)
||+++++++.+.... +.++ +.+|+|.+|+++|.++|+|++++..
T Consensus 154 ADi~l~~~~~~~~~~-----~~~~-~~~p~l~~w~~~~~~~p~~k~~~~~ 197 (201)
T PRK10542 154 ADAYLFTVLRWAYAV-----KLNL-EGLEHIAAYMQRVAERPAVAAALKA 197 (201)
T ss_pred HhHHHHHHHHHhhcc-----CCCc-ccchHHHHHHHHHHcCHHHHHHHHH
Confidence 999999998876532 3343 5799999999999999999998754
No 9
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.97 E-value=1.5e-30 Score=222.14 Aligned_cols=183 Identities=23% Similarity=0.273 Sum_probs=148.2
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEe-eCCeeecCcHHHHHHHHhhCCCC
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE-HNNEVKGESLDLMKFIDSHFEGP 168 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 168 (298)
|+||+++.||++++|+++|+++||+ |+.+.++...++.++.+ +||.|+||+|+ ++|.+|+||.+|++||+++++++
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~--ye~~~~~~~~~~~~~~~-~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGIT--FEFVNELPYNADNGVAQ-YNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCC--CeEEecCCCCCchhhhh-cCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC
Confidence 5899999999999999999999999 67777777666677887 99999999998 78899999999999999999877
Q ss_pred CCCCCCHHhHHHHHHHHHHHhHhHHHH----Hhhc-cC---Ch-------HHHHHHHHHHHHHHhccCCCCcccCC-CCH
Q 022381 169 SLFPDDPAKREFAEELFSYTDTFNKTV----RSSL-QG---DG-------NEASAAFDYLETALSKFNDGPFLLGH-FSI 232 (298)
Q Consensus 169 ~L~p~~~~~~a~~~~~~~~~~~~~~~~----~~~~-~~---~~-------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ 232 (298)
.|+|.++.+++++++|..+.+...... .... .+ .. +.+.+.|+.||++|. +++ ++|+ +|+
T Consensus 78 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~---~~~-l~Gd~~t~ 153 (202)
T PRK10357 78 AMLPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLV---DGT-LKTDTVNL 153 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhc---cCc-ccCCCcCH
Confidence 899999999999999987765433221 1111 11 11 457788999999998 466 9999 999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCC
Q 022381 233 ADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRD 282 (298)
Q Consensus 233 ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~ 282 (298)
||+++++.+.++.... .+..+..++|+|.+|+++|.+||+|+++.+.
T Consensus 154 ADi~l~~~l~~~~~~~---~~~~~~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 154 ATIAIACAVGYLNFRR---VAPGWCVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHHHHHHHHHHhcc---cCcchhhcChHHHHHHHHHhcChhhhhcCCC
Confidence 9999999988765311 1122335799999999999999999998875
No 10
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.97 E-value=5.5e-31 Score=227.01 Aligned_cols=179 Identities=18% Similarity=0.282 Sum_probs=141.5
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCC---CchhhhhhcCCCCCccEEee-----CC--eeecCcHHHH
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQN---RPDWYMEKVHLANKVPSLEH-----NN--EVKGESLDLM 158 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~---~~~~~~~~~nP~gkvP~L~~-----~g--~~l~eS~aI~ 158 (298)
||+||+.+ +|+++||+++|+++||+ |+.+.++... +.++|++ +||.|+||+|++ || .+|+||.||+
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~--~e~~~v~~~~~~~~~~~~~~-iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~ 76 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELD--YRLIKVDLGKGGQFRPEFLR-ISPNNKIPAIVDHSPADGGEPLSLFESGAIL 76 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCC--cEEEEecCcccccCCHHHHh-hCcCCCCCEEEeCCCCCCCCceeEEcHHHHH
Confidence 58999886 79999999999999999 6777777643 3577887 999999999996 45 5799999999
Q ss_pred HHHHhhCCCCCCCCCCHHhHHHHHHHHHHHhHhHHHHHhh---c-c--C--C-h------HHHHHHHHHHHHHHhccCCC
Q 022381 159 KFIDSHFEGPSLFPDDPAKREFAEELFSYTDTFNKTVRSS---L-Q--G--D-G------NEASAAFDYLETALSKFNDG 223 (298)
Q Consensus 159 ~yL~~~~~~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~---~-~--~--~-~------~~~~~~L~~le~~L~~~~~~ 223 (298)
+||+++|+ .+.|.++.+++++++|+.|.+......+.. + . . + . +.+.+.|+.||++|+ ++
T Consensus 77 ~YL~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~ 151 (215)
T PRK13972 77 LYLAEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLE---NS 151 (215)
T ss_pred HHHHHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhc---cC
Confidence 99999986 477888999999999998876322221110 1 0 1 1 1 456778999999998 67
Q ss_pred CcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCC
Q 022381 224 PFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRD 282 (298)
Q Consensus 224 ~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~ 282 (298)
+|++|+ +|+|||++++++..+... +.++ ++||+|.+|+++|.+||+|++++..
T Consensus 152 ~~l~Gd~~t~ADi~l~~~~~~~~~~-----~~~~-~~~P~l~~w~~r~~~rp~~~~~~~~ 205 (215)
T PRK13972 152 PWLGGENYSIADIACWPWVNAWTRQ-----RIDL-AMYPAVKNWHERIRSRPATGQALLK 205 (215)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhhc-----CCcc-hhCHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999 999999998877544311 2333 6899999999999999999887654
No 11
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.2e-31 Score=209.90 Aligned_cols=186 Identities=24% Similarity=0.397 Sum_probs=156.1
Q ss_pred CcEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCC----CchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHh
Q 022381 88 GTTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQN----RPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDS 163 (298)
Q Consensus 88 ~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~----~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~ 163 (298)
.+.+||.++.|..++|||++|.+|||+ |++..+++-. ...+|++ +||.++||+|++||.+|+||.||++||++
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~iD--Yey~PvnLlk~~~q~~~ef~~-iNPm~kVP~L~i~g~tl~eS~AII~YLeE 80 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGID--YEYKPVNLLKEEDQSDSEFKE-INPMEKVPTLVIDGLTLTESLAIIEYLEE 80 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCCC--cceeehhhhcchhhhhhHHhh-cCchhhCCeEEECCEEeehHHHHHHHHHh
Confidence 467899999999999999999999999 6777777732 2457887 99999999999999999999999999999
Q ss_pred hCCCCCCCCCCHHhHHHHHHHHHHHhH-hH----HHHHhhccCC----h-----HHHHHHHHHHHHHHhccCCCCcccCC
Q 022381 164 HFEGPSLFPDDPAKREFAEELFSYTDT-FN----KTVRSSLQGD----G-----NEASAAFDYLETALSKFNDGPFLLGH 229 (298)
Q Consensus 164 ~~~~~~L~p~~~~~~a~~~~~~~~~~~-~~----~~~~~~~~~~----~-----~~~~~~L~~le~~L~~~~~~~fl~G~ 229 (298)
.+|++.|+|.|+..|+.++++...+.+ +. ..++..+.++ . ..+-+.|..||+.|..+ .|.|.+||
T Consensus 81 t~P~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~-aGkycvGD 159 (217)
T KOG0868|consen 81 TYPDPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSH-AGKYCVGD 159 (217)
T ss_pred cCCCCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHc-cCCcccCc
Confidence 999999999999999999999887763 22 1233333211 1 45678899999999875 68999999
Q ss_pred -CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCCh
Q 022381 230 -FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDP 283 (298)
Q Consensus 230 -~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~ 283 (298)
+|+||+++.+.+.... .+..++ ..||-+.+..+.+.+.|+|+.+.++.
T Consensus 160 evtiADl~L~pqv~nA~-----rf~vdl-~PYPti~ri~e~l~elpaFq~ahP~n 208 (217)
T KOG0868|consen 160 EVTIADLCLPPQVYNAN-----RFHVDL-TPYPTITRINEELAELPAFQAAHPDN 208 (217)
T ss_pred eeehhhhccchhhhhhh-----hccccC-CcCchHHHHHHHHHhCHHHHhcCCCC
Confidence 9999999999887654 346676 58999999999999999999998864
No 12
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.97 E-value=3.1e-30 Score=221.29 Aligned_cols=183 Identities=25% Similarity=0.432 Sum_probs=148.2
Q ss_pred EEEecCCChhHHHHHHHHHHcCCCcceeEeecCC----CCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhhCC
Q 022381 91 RLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDL----QNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHFE 166 (298)
Q Consensus 91 ~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~----~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~~~ 166 (298)
+||++..||+++|||++|+++||+ |+.+.++. ..+++++++ +||.|+||+|++||.+|+||.+|++||+++++
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~--~~~~~v~~~~~~~~~~~~~~~-~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~ 77 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGID--YEYVPVNLLRDGEQRSPEFLA-LNPQGLVPTLDIDGEVLTQSLAIIEYLEETYP 77 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCC--ceEEecccccccccCChhhhh-cCCCCcCCEEEECCEEeecHHHHHHHHHHhCC
Confidence 489999999999999999999999 56666665 224677887 99999999999999999999999999999999
Q ss_pred CCCCCCCCHHhHHHHHHHHHHHh-HhHH----HHH----hhccCC-h-------HHHHHHHHHHHHHHhccCCCCcccCC
Q 022381 167 GPSLFPDDPAKREFAEELFSYTD-TFNK----TVR----SSLQGD-G-------NEASAAFDYLETALSKFNDGPFLLGH 229 (298)
Q Consensus 167 ~~~L~p~~~~~~a~~~~~~~~~~-~~~~----~~~----~~~~~~-~-------~~~~~~L~~le~~L~~~~~~~fl~G~ 229 (298)
++.|+|.++.+++.+++|..++. .+.. .+. ...... . +.+.+.|+.||++|+.. +++|++|+
T Consensus 78 ~~~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~ 156 (210)
T TIGR01262 78 DPPLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPH-AGAFCVGD 156 (210)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCEeeCC
Confidence 87899999999999999988775 3221 111 111111 1 45778899999999841 36799999
Q ss_pred -CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCCh
Q 022381 230 -FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDP 283 (298)
Q Consensus 230 -~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~ 283 (298)
+|+||+++++++.++... +.++ ++||+|++|+++|.+||+|+++....
T Consensus 157 ~~T~ADi~~~~~l~~~~~~-----~~~~-~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 157 TPTLADLCLVPQVYNAERF-----GVDL-TPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred CCCHHHHHHHHHHHHHHHc-----CCCc-ccchHHHHHHHHHhcCHHHHHhCccc
Confidence 999999999998876522 3333 68999999999999999999998764
No 13
>PLN02395 glutathione S-transferase
Probab=99.97 E-value=1.7e-30 Score=223.74 Aligned_cols=184 Identities=22% Similarity=0.356 Sum_probs=144.9
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC---CCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhhC
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ---NRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHF 165 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~---~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~~ 165 (298)
.++||+... ++++||+++|+++||+ |+.+.++.. +++++|++ +||.|+||+|+++|.+|+||.+|++||+++|
T Consensus 2 ~~~ly~~~~-~~~~rv~~~L~e~gl~--~e~~~v~~~~~~~~~~~~~~-~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~ 77 (215)
T PLN02395 2 VLKVYGPAF-ASPKRALVTLIEKGVE--FETVPVDLMKGEHKQPEYLA-LQPFGVVPVIVDGDYKIFESRAIMRYYAEKY 77 (215)
T ss_pred eEEEEcCCc-CcHHHHHHHHHHcCCC--ceEEEeccccCCcCCHHHHh-hCCCCCCCEEEECCEEEEcHHHHHHHHHHHc
Confidence 489999755 4699999999999999 666666653 45678997 9999999999999999999999999999999
Q ss_pred CC--CCCCCCCHHhHHHHHHHHHHHhH-h----HHH----HHhhc---cCCh-------HHHHHHHHHHHHHHhccCCCC
Q 022381 166 EG--PSLFPDDPAKREFAEELFSYTDT-F----NKT----VRSSL---QGDG-------NEASAAFDYLETALSKFNDGP 224 (298)
Q Consensus 166 ~~--~~L~p~~~~~~a~~~~~~~~~~~-~----~~~----~~~~~---~~~~-------~~~~~~L~~le~~L~~~~~~~ 224 (298)
++ +.|+|.++.+++++++|+.+.+. + ... .+... ..+. +++.+.++.||+.|+ +++
T Consensus 78 ~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~ 154 (215)
T PLN02395 78 RSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLS---KSK 154 (215)
T ss_pred CCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhc---CCc
Confidence 75 36999999999999999987652 1 111 11111 1111 556788999999998 578
Q ss_pred cccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCC
Q 022381 225 FLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRD 282 (298)
Q Consensus 225 fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~ 282 (298)
|++|+ +|+||+++++++.++.... ......+.+|+|.+|+++|.++|+|++++..
T Consensus 155 ~l~G~~~s~ADi~l~~~~~~~~~~~---~~~~~~~~~p~L~~w~~~~~~rp~~k~~~~~ 210 (215)
T PLN02395 155 YLAGDFVSLADLAHLPFTEYLVGPI---GKAYLIKDRKHVSAWWDDISSRPAWKEVLAK 210 (215)
T ss_pred cccCCCcCHHHHHHHHHHHHHhccc---chhhhhccCchHHHHHHHHHcChHHHHHHHH
Confidence 99999 9999999999887763210 0112246799999999999999999988653
No 14
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.5e-30 Score=218.66 Aligned_cols=176 Identities=31% Similarity=0.552 Sum_probs=144.0
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC--CCchhhhhhcCCCCCccEEeeCCe-eecCcHHHHHHHHhhCC
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ--NRPDWYMEKVHLANKVPSLEHNNE-VKGESLDLMKFIDSHFE 166 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~--~~~~~~~~~~nP~gkvP~L~~~g~-~l~eS~aI~~yL~~~~~ 166 (298)
|+||+.+.||+++||+++|.++|++ |+.+.++.. .++++|+. +||.|+||+|+++|. +|+||.||++||+++||
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~--ye~~~v~~~~~~~~~~~~~-~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~ 77 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLP--YEIVLVDLDAEQKPPDFLA-LNPLGKVPALVDDDGEVLTESGAILEYLAERYP 77 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCC--ceEEEeCcccccCCHHHHh-cCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCC
Confidence 5899999999999999999999999 677777775 47788998 999999999997765 99999999999999999
Q ss_pred CCCCCCCCHH---hHHHHHHHHHHHh-HhHHHHHhhc---c----C-Ch-------HHHHHHHHHHHHHHhccCCCCccc
Q 022381 167 GPSLFPDDPA---KREFAEELFSYTD-TFNKTVRSSL---Q----G-DG-------NEASAAFDYLETALSKFNDGPFLL 227 (298)
Q Consensus 167 ~~~L~p~~~~---~~a~~~~~~~~~~-~~~~~~~~~~---~----~-~~-------~~~~~~L~~le~~L~~~~~~~fl~ 227 (298)
++.|+|.++. +|+.+..|..+.. .+...+.... . . .. +.+...++.+|..|+ +++|++
T Consensus 78 ~~~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~ 154 (211)
T COG0625 78 GPPLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLA---DGPYLA 154 (211)
T ss_pred CCCcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhc---cCCccc
Confidence 8779998875 7777778888775 2222211110 0 0 11 667889999999999 699999
Q ss_pred CC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccc
Q 022381 228 GH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFN 277 (298)
Q Consensus 228 G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~ 277 (298)
|+ +|+||+++++.+.++... +.++ +.+|++.+|++||.++|+++
T Consensus 155 G~~~tiAD~~~~~~~~~~~~~-----~~~~-~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 155 GDRFTIADIALAPLLWRLALL-----GEEL-ADYPALKAWYERVLARPAFR 199 (211)
T ss_pred CCCCCHHHHHHHHHHHHhhhc-----Cccc-ccChHHHHHHHHHHcCCchh
Confidence 99 999999999999886532 3333 68999999999999999965
No 15
>PRK11752 putative S-transferase; Provisional
Probab=99.97 E-value=4.8e-29 Score=221.28 Aligned_cols=189 Identities=19% Similarity=0.227 Sum_probs=145.9
Q ss_pred CCCcEEEEecCCChhHHHHHHHHHHc------CCCcceeEeecCCC---CCchhhhhhcCCCCCccEEeeC----Ceeec
Q 022381 86 FDGTTRLYISYTCPYAQRVWITRNCK------GLQEKIKLVPIDLQ---NRPDWYMEKVHLANKVPSLEHN----NEVKG 152 (298)
Q Consensus 86 ~~~~~~Ly~~~~sp~~~rvrl~L~~~------gi~~~~~~~~v~~~---~~~~~~~~~~nP~gkvP~L~~~----g~~l~ 152 (298)
.+..|+||+.+ ||+++||+++|+++ |++ |+.+.+++. ...++|++ +||.|+||+|+++ |.+|+
T Consensus 41 ~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~--ye~~~v~~~~~~~~~~e~~~-iNP~GkVP~Lv~~dg~~~~~L~ 116 (264)
T PRK11752 41 GKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAE--YDAWLIRIGEGDQFSSGFVE-INPNSKIPALLDRSGNPPIRVF 116 (264)
T ss_pred CCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCc--eEEEEecCccccccCHHHHh-hCCCCCCCEEEeCCCCCCeEEE
Confidence 45579999975 99999999999997 888 677777763 34678998 9999999999974 37999
Q ss_pred CcHHHHHHHHhhCCCCCCCCCCHHhHHHHHHHHHHHhHhHH----HHHhh--ccCC--h-------HHHHHHHHHHHHHH
Q 022381 153 ESLDLMKFIDSHFEGPSLFPDDPAKREFAEELFSYTDTFNK----TVRSS--LQGD--G-------NEASAAFDYLETAL 217 (298)
Q Consensus 153 eS~aI~~yL~~~~~~~~L~p~~~~~~a~~~~~~~~~~~~~~----~~~~~--~~~~--~-------~~~~~~L~~le~~L 217 (298)
||.||++||+++|+ .|+|.++.+++++++|+.+...... .+... ..++ . +++.+.|+.||++|
T Consensus 117 ES~AIl~YL~~~~~--~L~P~~~~era~v~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L 194 (264)
T PRK11752 117 ESGAILLYLAEKFG--AFLPKDLAARTETLNWLFWQQGSAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQL 194 (264)
T ss_pred cHHHHHHHHHHhcC--CcCCCCHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999997 4999999999999999888753221 11111 1111 1 45778899999999
Q ss_pred hccCCCCcccCC-CCHHHHHHHHHHHHHhhhhh-hhccCCCCCCChHHHHHHHHHhcCcccccccCCh
Q 022381 218 SKFNDGPFLLGH-FSIADIAYAPFIERYQPFLL-EVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDP 283 (298)
Q Consensus 218 ~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~-~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~ 283 (298)
+ +++|++|+ +|+|||++++++.++..... ...+....+.||+|.+|+++|.+||+|+++....
T Consensus 195 ~---~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~ 259 (264)
T PRK11752 195 A---EHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVN 259 (264)
T ss_pred c---cCCCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhcc
Confidence 8 57899999 99999999998877643110 0001111358999999999999999999987654
No 16
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.95 E-value=3.4e-27 Score=202.02 Aligned_cols=184 Identities=16% Similarity=0.219 Sum_probs=135.4
Q ss_pred CcEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhh-----h-hhcCCCCCccEEeeCCeeecCcHHHHHHH
Q 022381 88 GTTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWY-----M-EKVHLANKVPSLEHNNEVKGESLDLMKFI 161 (298)
Q Consensus 88 ~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~-----~-~~~nP~gkvP~L~~~g~~l~eS~aI~~yL 161 (298)
++++||+++.++++++||++|+++||+ |+.+.++.. ++++. + +++||.|+||+|++||.+|+||.||++||
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~--ye~~~~~~~-~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YL 79 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIE--YTDKRFGEN-GDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYL 79 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCC--eEEEecccc-chHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence 348999999999999999999999999 666655432 22211 1 02899999999999999999999999999
Q ss_pred HhhCCCCCCCCCCHHhHHHHHHHHHHHhHhHHHHHhh--ccCCh-----HHHHHHHHHHHHHHhccCCCCcccCC-CCHH
Q 022381 162 DSHFEGPSLFPDDPAKREFAEELFSYTDTFNKTVRSS--LQGDG-----NEASAAFDYLETALSKFNDGPFLLGH-FSIA 233 (298)
Q Consensus 162 ~~~~~~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~L~~le~~L~~~~~~~fl~G~-~T~A 233 (298)
+++|+ +.+.+..++..++.+...+.++...+... +..+. +.+.+.|+.||+.|++ ++++|++|+ +|+|
T Consensus 80 a~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~~l~Gd~~T~A 155 (205)
T PTZ00057 80 SKKYK---ICGESELNEFYADMIFCGVQDIHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKK-NHCNYFVGDNLTYA 155 (205)
T ss_pred HHHcC---CCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCeeeCCcccHH
Confidence 99997 44556555555554444333332211110 10111 6678899999999984 135899999 9999
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCCh
Q 022381 234 DIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDP 283 (298)
Q Consensus 234 Di~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~ 283 (298)
|+++++++.++... .+.++ +.||+|.+|++||.++|+|++++.++
T Consensus 156 D~~l~~~~~~~~~~----~~~~l-~~~P~l~~~~~r~~~~P~~k~y~~~~ 200 (205)
T PTZ00057 156 DLAVFNLYDDIETK----YPNSL-KNFPLLKAHNEFISNLPNIKNYISNR 200 (205)
T ss_pred HHHHHHHHHHHHHh----Chhhh-ccChhHHHHHHHHHhChHHHHHHHhC
Confidence 99999998876521 12333 68999999999999999999987654
No 17
>PRK10387 glutaredoxin 2; Provisional
Probab=99.95 E-value=2.5e-27 Score=203.26 Aligned_cols=170 Identities=21% Similarity=0.326 Sum_probs=128.9
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEe-eCCeeecCcHHHHHHHHhhCCCC
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE-HNNEVKGESLDLMKFIDSHFEGP 168 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 168 (298)
|+||++..||+|+||+++|+++||+ |+.+.++...... ... .||.|+||+|+ +||.+|+||.+|++||+++|+++
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~--y~~~~~~~~~~~~-~~~-~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIP--VELIVLANDDEAT-PIR-MIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCC--eEEEEcCCCchhh-HHH-hcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 6899999999999999999999999 6777776543222 244 89999999995 88999999999999999999875
Q ss_pred CCCCCCHHhHHHHHHHHHHHhHhH-HHHHhhc------------------------cC---------Ch--HHHHHHHHH
Q 022381 169 SLFPDDPAKREFAEELFSYTDTFN-KTVRSSL------------------------QG---------DG--NEASAAFDY 212 (298)
Q Consensus 169 ~L~p~~~~~~a~~~~~~~~~~~~~-~~~~~~~------------------------~~---------~~--~~~~~~L~~ 212 (298)
.+.+ .+++.+++|+.+..... ..++..+ .+ +. +++.+.|+.
T Consensus 77 ~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 153 (210)
T PRK10387 77 LLTG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRA 153 (210)
T ss_pred cCCC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHH
Confidence 4532 25667777777664211 1111110 00 01 467788899
Q ss_pred HHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccc
Q 022381 213 LETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFN 277 (298)
Q Consensus 213 le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~ 277 (298)
+|++|+ + +|++|+ +|+||+++++++.++.... +. +.+|+|.+|++||.+||++.
T Consensus 154 le~~L~---~-~~l~G~~~s~ADi~l~~~l~~~~~~~----~~---~~~p~l~~w~~r~~~r~~~~ 208 (210)
T PRK10387 154 LDPLIV---K-PNAVNGELSTDDIHLFPILRNLTLVK----GI---EWPPRVADYRDNMSKKTQVP 208 (210)
T ss_pred HHHHhc---C-ccccCCCCCHHHHHHHHHHhcceeec----CC---CCCHHHHHHHHHHHHHhCCC
Confidence 999887 5 999999 9999999999998886321 22 24699999999999999863
No 18
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=2.3e-26 Score=199.46 Aligned_cols=188 Identities=23% Similarity=0.414 Sum_probs=153.1
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCC---CCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhhC
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDL---QNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHF 165 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~---~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~~ 165 (298)
.++||++..+|.+++|.++++++|++ ++.+.++. ++++++|++ +||.|+||+|+|+|..++||.||+.||.++|
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~--~e~~~v~~~~ge~~~pefl~-~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky 78 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLE--VELKPVDLVKGEQKSPEFLK-LNPLGKVPALEDGGLTLWESHAILRYLAEKY 78 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCc--eeEEEeeccccccCCHHHHh-cCcCCCCCeEecCCeEEeeHHHHHHHHHHHc
Confidence 58999999999999999999999999 66776665 457888997 9999999999999999999999999999999
Q ss_pred C-CCC-CCCCCHHhHHHHHHHHHHHhHhH-HHH-----Hhh-ccCC-------h---HHHHHHHHHHHHHHhccCCCCcc
Q 022381 166 E-GPS-LFPDDPAKREFAEELFSYTDTFN-KTV-----RSS-LQGD-------G---NEASAAFDYLETALSKFNDGPFL 226 (298)
Q Consensus 166 ~-~~~-L~p~~~~~~a~~~~~~~~~~~~~-~~~-----~~~-~~~~-------~---~~~~~~L~~le~~L~~~~~~~fl 226 (298)
. ... |+|.++.+++.+++|+.+..+.. ... +.. ..+. . +++...++.+|+.|. ++.|+
T Consensus 79 ~~~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~---~~~yl 155 (226)
T KOG0867|consen 79 GPLGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLK---TQVYL 155 (226)
T ss_pred CCCCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHc---cCCcc
Confidence 6 334 99999999999999998876422 221 111 1111 1 788999999999999 68999
Q ss_pred cCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCChHH
Q 022381 227 LGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDPKE 285 (298)
Q Consensus 227 ~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~~~ 285 (298)
.|+ +|+||+.+.+.+..+.. ...+.....++|++.+|++++.++|++++.......
T Consensus 156 ~g~~~tlADl~~~~~~~~~~~---~~~~~~~~~~~p~v~~W~~~~~~~P~~~e~~~~~~~ 212 (226)
T KOG0867|consen 156 AGDQLTLADLSLASTLSQFQG---KFATEKDFEKYPKVARWYERIQKRPAYEEANEKGAA 212 (226)
T ss_pred cCCcccHHHHHHhhHHHHHhH---hhhhhhhhhhChHHHHHHHHHHhCccHHHHHHHHHH
Confidence 999 99999999999888741 111233347899999999999999998887765433
No 19
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.94 E-value=1.6e-25 Score=192.25 Aligned_cols=168 Identities=20% Similarity=0.316 Sum_probs=125.1
Q ss_pred EEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEe-eCCeeecCcHHHHHHHHhhCCCCC
Q 022381 91 RLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE-HNNEVKGESLDLMKFIDSHFEGPS 169 (298)
Q Consensus 91 ~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~-~~g~~l~eS~aI~~yL~~~~~~~~ 169 (298)
+||++..||||+|||++|+++|++ |+.+.++...... ..+ +||.|+||+|+ +||.+++||.+|++||+++|+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~--~e~~~~~~~~~~~-~~~-~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~ 76 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIP--VEKHVLLNDDEET-PIR-MIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPL 76 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCC--eEEEECCCCcchh-HHH-hcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCcc
Confidence 589999999999999999999999 6666665433222 355 99999999998 899999999999999999998654
Q ss_pred CCCCCHHhHHHHHHHHHHHhHhHH-HHHhhcc------------------------C---------Ch--HHHHHHHHHH
Q 022381 170 LFPDDPAKREFAEELFSYTDTFNK-TVRSSLQ------------------------G---------DG--NEASAAFDYL 213 (298)
Q Consensus 170 L~p~~~~~~a~~~~~~~~~~~~~~-~~~~~~~------------------------~---------~~--~~~~~~L~~l 213 (298)
+.|. .++.+++|+.++..+.. .++..+. + +. +.+++.|+.|
T Consensus 77 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l 153 (209)
T TIGR02182 77 LTGK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEEL 153 (209)
T ss_pred CCCC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHH
Confidence 4332 34556666665443221 1111100 0 11 5678889999
Q ss_pred HHHHhccCCCCcccCCCCHHHHHHHHHHHHHhhhhhhhccCCCCCCCh-HHHHHHHHHhcCccc
Q 022381 214 ETALSKFNDGPFLLGHFSIADIAYAPFIERYQPFLLEVKKNDITAGRP-KLAAWIEEMNKNEAF 276 (298)
Q Consensus 214 e~~L~~~~~~~fl~G~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p-~L~~w~~r~~~~p~~ 276 (298)
|++|+ +++|++|++|+||+++++++.++.... +. .+| +|.+|++||.+++++
T Consensus 154 e~~L~---~~~~l~g~~TiADi~l~~~l~~~~~~~----~~----~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 154 DKLID---GPNAVNGELSEDDILVFPLLRNLTLVA----GI----NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHHHh---CccccCCCCCHHHHHHHHHhcCeeeec----CC----CCChHHHHHHHHHHHHhCC
Confidence 99998 789995559999999999998776321 11 356 999999999999876
No 20
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.92 E-value=1.6e-24 Score=182.97 Aligned_cols=198 Identities=20% Similarity=0.316 Sum_probs=144.1
Q ss_pred CcEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC---CCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhh
Q 022381 88 GTTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ---NRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSH 164 (298)
Q Consensus 88 ~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~---~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~ 164 (298)
..+.||+++.|--+||||+++++|||+ ++-..|++. ...+||.. +||.|+||||++|+.+|.|+..|++|++++
T Consensus 25 e~~vLyhhpysf~sQkVrlvi~EK~id--~~~y~V~l~~geh~epwFmr-lNp~gevPVl~~g~~II~d~tqIIdYvErt 101 (325)
T KOG4420|consen 25 ESLVLYHHPYSFSSQKVRLVIAEKGID--CEEYDVSLPQGEHKEPWFMR-LNPGGEVPVLIHGDNIISDYTQIIDYVERT 101 (325)
T ss_pred hcceeeecCcccccceeeeehhhcccc--cceeeccCccccccCchhee-cCCCCCCceEecCCeecccHHHHHHHHHHh
Confidence 349999999999999999999999999 677777763 46899998 999999999999999999999999999999
Q ss_pred CC-CCCCCCCCH-HhHHHHHHHHHHHh-----H----------h-----H---H-----------HHHhhcc--------
Q 022381 165 FE-GPSLFPDDP-AKREFAEELFSYTD-----T----------F-----N---K-----------TVRSSLQ-------- 200 (298)
Q Consensus 165 ~~-~~~L~p~~~-~~~a~~~~~~~~~~-----~----------~-----~---~-----------~~~~~~~-------- 200 (298)
|- +..|.|+-. .+..++..+....+ . + . . .+.....
T Consensus 102 f~ger~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ 181 (325)
T KOG4420|consen 102 FTGERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAE 181 (325)
T ss_pred hcccccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhH
Confidence 85 455777321 11111111111111 0 0 0 0 0000000
Q ss_pred ----------------CCh-------HHHHHHHHHHHHHHhcc-CCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCC
Q 022381 201 ----------------GDG-------NEASAAFDYLETALSKF-NDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKND 255 (298)
Q Consensus 201 ----------------~~~-------~~~~~~L~~le~~L~~~-~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~ 255 (298)
.+. +++...|+.+|..|+.. ...+||+|+ +|+||+.+.+.|.++..++-.. ..
T Consensus 182 ay~akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~--~y 259 (325)
T KOG4420|consen 182 AYLAKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEK--KY 259 (325)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHH--Hh
Confidence 000 55677888888888832 126899999 9999999999999998764322 12
Q ss_pred CC-CCChHHHHHHHHHhcCcccccccCChHHHHHHH
Q 022381 256 IT-AGRPKLAAWIEEMNKNEAFNQTRRDPKELVETY 290 (298)
Q Consensus 256 ~~-~~~p~L~~w~~r~~~~p~~~~~~~~~~~~~~~~ 290 (298)
|. .+.|||.+|++|+.+|++|++++++.-.++.++
T Consensus 260 w~~gsrpnle~Yf~rvrrR~sf~kvlg~~fnilr~~ 295 (325)
T KOG4420|consen 260 WEDGSRPNLESYFERVRRRFSFRKVLGDIFNILRFR 295 (325)
T ss_pred cccCCCccHHHHHHHHHhhhHHHHhhhhHHHHHHHH
Confidence 22 578999999999999999999999877776643
No 21
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.91 E-value=5.4e-23 Score=169.33 Aligned_cols=195 Identities=20% Similarity=0.392 Sum_probs=157.0
Q ss_pred CCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhhCCCCCCCCC-C
Q 022381 96 YTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHFEGPSLFPD-D 174 (298)
Q Consensus 96 ~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~~~~~~L~p~-~ 174 (298)
..||||||+.+.|.++|++ |.+.-||...+|+||+. +.|.|++|+|..|+.+++||..|.++|+++++.+.+--- +
T Consensus 19 Gdcpf~qr~~m~L~~k~~~--f~vttVd~~~kp~~f~~-~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~ 95 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVP--FKVTTVDLSRKPEWFLD-ISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAP 95 (221)
T ss_pred CCChhHHHHHHHHHHcCCC--ceEEEeecCCCcHHHHh-hCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCC
Confidence 5799999999999999999 67777889999999998 999999999999999999999999999999997654221 3
Q ss_pred HHhHHHHHHHHHHHhHhHHHHHh-hccCChHHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhc
Q 022381 175 PAKREFAEELFSYTDTFNKTVRS-SLQGDGNEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVK 252 (298)
Q Consensus 175 ~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~ 252 (298)
++.......+..-+..|...--. .-.+-++.+...|..|++.|..-++++|+.|| +|.|||.|.|-|+.++.+..++.
T Consensus 96 ~E~asag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~k~yk 175 (221)
T KOG1422|consen 96 PESASAGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAAKHYK 175 (221)
T ss_pred HHHHhhHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHHHHHhc
Confidence 33222222222222222111000 00011156788889999999852369999999 99999999999999999999999
Q ss_pred cCCCCCCChHHHHHHHHHhcCcccccccCChHHHHHHHHHH
Q 022381 253 KNDITAGRPKLAAWIEEMNKNEAFNQTRRDPKELVETYKKR 293 (298)
Q Consensus 253 ~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~~~~~~~~~~~ 293 (298)
++++.+..+.+++|+..+.++.+|..+++..+++...|+..
T Consensus 176 ~~~IP~~lt~V~rYl~~~ya~d~F~~tcp~d~ei~~~y~~~ 216 (221)
T KOG1422|consen 176 NFEIPASLTGVWRYLKNAYARDEFTNTCPADQEIILAYAPV 216 (221)
T ss_pred CCCCchhhhHHHHHHHHHHhHHHhhcCCchHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999863
No 22
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2e-22 Score=170.03 Aligned_cols=184 Identities=15% Similarity=0.207 Sum_probs=149.1
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhhCCCC
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHFEGP 168 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~~~~~ 168 (298)
.++|+|++..+++.-+|+++++.|++ ||...+..++.-+..+. ..|+|++|+|..||..|.+|.||++||+++|+
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~--fEd~r~~~~~~w~~~K~-~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g-- 77 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVS--FEDKRITMEDAWEELKD-KMPFGQLPVLEVDGKKLVQSRAILRYLARKFG-- 77 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCC--cceeeeccccchhhhcc-cCCCCCCCEEeECCEeeccHHHHHHHHHHHhC--
Confidence 58999999999999999999999999 66666665542122344 57999999999999999999999999999998
Q ss_pred CCCCCCHHhHHHHHHHHHHHhHhHHHHHhhc-----cCC-h--------HHHHHHHHHHHHHHhccCCCCcccCC-CCHH
Q 022381 169 SLFPDDPAKREFAEELFSYTDTFNKTVRSSL-----QGD-G--------NEASAAFDYLETALSKFNDGPFLLGH-FSIA 233 (298)
Q Consensus 169 ~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~-~--------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~A 233 (298)
|.+.++.+.++++.+.+.+.++...++... .+. . ......+..+++.|... ++.|++|| +|+|
T Consensus 78 -l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~-~sgflvGd~lT~a 155 (206)
T KOG1695|consen 78 -LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKN-KSGFLVGDKLTWA 155 (206)
T ss_pred -cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhC-CCCeeecCcccHH
Confidence 999999999999999988887666533221 111 1 24567888999999863 56799999 9999
Q ss_pred HHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCCh
Q 022381 234 DIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDP 283 (298)
Q Consensus 234 Di~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~ 283 (298)
|+.++..+..+... ......+.+|+|.++.+++.++|.+++.+...
T Consensus 156 Dl~i~e~l~~l~~~----~~~~~~~~~P~L~a~~~kv~~~p~ik~~i~~r 201 (206)
T KOG1695|consen 156 DLVIAEHLDTLEEL----LDPSALDHFPKLKAFKERVSSIPNIKKYLESR 201 (206)
T ss_pred HHHHHHHHHHHHHh----cCchhhccChHHHHHHHHHhcCchHHHHHhcC
Confidence 99999999888742 23344568899999999999999999887653
No 23
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=3.4e-22 Score=170.59 Aligned_cols=201 Identities=25% Similarity=0.391 Sum_probs=158.4
Q ss_pred CCCCCcEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCC-C------ch-----------------hhhhhcCCC-
Q 022381 84 PLFDGTTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQN-R------PD-----------------WYMEKVHLA- 138 (298)
Q Consensus 84 ~~~~~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~-~------~~-----------------~~~~~~nP~- 138 (298)
+++.|++.||..-.|||++|..++.++||++..+.+..+++.. . ++ .|.. -.|.
T Consensus 46 ~~e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~-adP~Y 124 (324)
T COG0435 46 KAEKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTR-ADPDY 124 (324)
T ss_pred CCCCCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhh-cCCCC
Confidence 4589999999999999999999999999999767777666521 0 11 1111 2332
Q ss_pred ---CCccEEeeC---CeeecCcHHHHHHHHhhCCC-----CCCCCCCHHhHHHHHHHHHHHh-HhHHHHHhhccCCh---
Q 022381 139 ---NKVPSLEHN---NEVKGESLDLMKFIDSHFEG-----PSLFPDDPAKREFAEELFSYTD-TFNKTVRSSLQGDG--- 203 (298)
Q Consensus 139 ---gkvP~L~~~---g~~l~eS~aI~~yL~~~~~~-----~~L~p~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~--- 203 (298)
-+||||+|. ..|-.||..|++.++..|.+ ..|+|.+ -|.+++.+++++. .+...+|+.-..+.
T Consensus 125 sgRvTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~a 202 (324)
T COG0435 125 SGRVTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWIYDTVNNGVYKAGFATTQEA 202 (324)
T ss_pred CCceeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhhcccccCceeeecccchHHH
Confidence 379999975 35789999999999988752 4688865 6788999999887 56666666532211
Q ss_pred -----HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCC--CCChHHHHHHHHHhcCcc
Q 022381 204 -----NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDIT--AGRPKLAAWIEEMNKNEA 275 (298)
Q Consensus 204 -----~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~--~~~p~L~~w~~r~~~~p~ 275 (298)
+++.+.|+.||..|+ ++.|++|+ +|.||+.||+.|.+++.++..++++++. .+||+|..|+..+.+.|+
T Consensus 203 Yeea~~~lF~~Ld~lE~~L~---~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg 279 (324)
T COG0435 203 YEEAVKKLFEALDKLEQILS---ERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPG 279 (324)
T ss_pred HHHHHHHHHHHHHHHHHHhh---cCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCcc
Confidence 678899999999999 69999999 9999999999999999999888888764 579999999999999999
Q ss_pred cccccCChHHHHHHH
Q 022381 276 FNQTRRDPKELVETY 290 (298)
Q Consensus 276 ~~~~~~~~~~~~~~~ 290 (298)
|.+++.-...-..+|
T Consensus 280 ~~~T~df~hIK~hYy 294 (324)
T COG0435 280 FAETVDFDHIKLHYY 294 (324)
T ss_pred cccccchhHhhhhhe
Confidence 999986443333333
No 24
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.5e-22 Score=167.81 Aligned_cols=210 Identities=26% Similarity=0.383 Sum_probs=158.7
Q ss_pred ccchhhhcCCCCCCCCCCCCCCCCcEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCC-CCCchh-------------
Q 022381 65 SNVVKEVLPPALDSTSEPPPLFDGTTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDL-QNRPDW------------- 130 (298)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~-~~~~~~------------- 130 (298)
.++..+.+++ .... ..| ..|++.||....|||++|..+++.+||++..+.+..+.+ .+...|
T Consensus 17 ~ssfr~~iSk--d~~~-~~p-akgryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~ 92 (319)
T KOG2903|consen 17 ASSFRETISK--DHPI-FKP-AKGRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSE 92 (319)
T ss_pred ecccccccCC--CCCc-cCC-CCceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchh
Confidence 3466676666 1111 223 349999999999999999999999999997777766665 211111
Q ss_pred ------------------hhhhcCCC----CCccEEeeC---CeeecCcHHHHHHHHhhCC---------CCCCCCCCHH
Q 022381 131 ------------------YMEKVHLA----NKVPSLEHN---NEVKGESLDLMKFIDSHFE---------GPSLFPDDPA 176 (298)
Q Consensus 131 ------------------~~~~~nP~----gkvP~L~~~---g~~l~eS~aI~~yL~~~~~---------~~~L~p~~~~ 176 (298)
|.. -+|. -+||||+|- ..|-.||..|++.+...|. .-.|+|.+
T Consensus 93 ~l~~~~d~~~g~k~l~elY~~-~~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~-- 169 (319)
T KOG2903|consen 93 RLGVTPDPLNGAKRLRELYYI-ASPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS-- 169 (319)
T ss_pred cccCCCcccccchhHHHHHhh-cCCCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH--
Confidence 111 2222 379999974 5688999999999994442 23678855
Q ss_pred hHHHHHHHHHHHh-HhHHHHHhhccC---Ch-----HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhh
Q 022381 177 KREFAEELFSYTD-TFNKTVRSSLQG---DG-----NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQP 246 (298)
Q Consensus 177 ~~a~~~~~~~~~~-~~~~~~~~~~~~---~~-----~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~ 246 (298)
.+++++.+..|+. .+...+|+.-.. +. .++.+.|+++|+.|.+. .+.|++|+ +|.|||.|++.+.|++.
T Consensus 170 L~~~Ide~N~wvy~~INNGVYk~GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~-~~~f~~G~~LTeaDirLy~TiIRFD~ 248 (319)
T KOG2903|consen 170 LRAQIDETNSWVYDKINNGVYKCGFAEKQEAYEEEVNQLFEALDRCEDVLGKN-RKYFLCGDTLTEADIRLYTTIIRFDE 248 (319)
T ss_pred HHHHHhhhhceecccccCceeeeccccccchHHHHHHHHHHHHHHHHHHHhcc-cceEeeccccchhheeeeeeEEeehh
Confidence 6789999999987 566667765321 11 67889999999999952 34599999 99999999999999999
Q ss_pred hhhhhccCCC---CCCChHHHHHHHHHhc-CcccccccCC
Q 022381 247 FLLEVKKNDI---TAGRPKLAAWIEEMNK-NEAFNQTRRD 282 (298)
Q Consensus 247 ~~~~~~~~~~---~~~~p~L~~w~~r~~~-~p~~~~~~~~ 282 (298)
++..+++++. .++||+|..|+.++.. .|+|..+..-
T Consensus 249 VY~~hFKCn~~~ir~~Yp~l~~~lk~iY~~~~~~~~Ttd~ 288 (319)
T KOG2903|consen 249 VYVQHFKCNKKTIRDEYPNLHNWLKNIYWNIPGFSSTTDF 288 (319)
T ss_pred hhheeeecchhhhhccCcHHHHHHHHHHhhccchhhccch
Confidence 9988888764 3699999999999997 8999998854
No 25
>PLN02907 glutamate-tRNA ligase
Probab=99.85 E-value=3.3e-20 Score=183.26 Aligned_cols=155 Identities=20% Similarity=0.324 Sum_probs=127.9
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEe-eCCeeecCcHHHHHHHHhhCCCC
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE-HNNEVKGESLDLMKFIDSHFEGP 168 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 168 (298)
++||+.+.++ +.++.++|++.|++ ++.+. .+|.|+||+|+ +||.+|+||.||++||++.+++.
T Consensus 3 ~kLy~~~~S~-~~~v~~~L~~lgv~--~e~~~-------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPPDSP-PLAVIAAAKVAGVP--LTIDP-------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECCCCC-hHHHHHHHHHcCCC--cEEee-------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCc
Confidence 7899998764 67899999999999 55542 46899999999 58899999999999999999988
Q ss_pred CCCCCCHHhHHHHHHHHHHHhHhHHHHHhhccCChHHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhh
Q 022381 169 SLFPDDPAKREFAEELFSYTDTFNKTVRSSLQGDGNEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPF 247 (298)
Q Consensus 169 ~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~ 247 (298)
.|+|.++.+++++++|+.+...+.. ...+.+.++.||++|+ +++||+|+ +|+||+++++.+......
T Consensus 67 ~L~p~d~~erAqV~qWL~~~~~~~~---------~~~l~~~L~~LE~~L~---~rtYLvGd~lTLADIaL~~~L~~~~~~ 134 (722)
T PLN02907 67 GFYGQDAFESSQVDEWLDYAPTFSS---------GSEFENACEYVDGYLA---SRTFLVGYSLTIADIAIWSGLAGSGQR 134 (722)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhccc---------HHHHHHHHHHHHHHhc---cCCeecCCCCCHHHHHHHHHHHhhhhh
Confidence 8999999999999999988765321 1456778999999998 68999999 999999999987554111
Q ss_pred hhhhccCCCCCCChHHHHHHHHHhcCcc
Q 022381 248 LLEVKKNDITAGRPKLAAWIEEMNKNEA 275 (298)
Q Consensus 248 ~~~~~~~~~~~~~p~L~~w~~r~~~~p~ 275 (298)
..+......||+|.+|+++|.++|+
T Consensus 135 ---~~~~~~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 135 ---WESLRKSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred ---hhcccccccCHHHHHHHHHHHhCCC
Confidence 1122234689999999999999999
No 26
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.79 E-value=5.9e-19 Score=130.86 Aligned_cols=86 Identities=36% Similarity=0.663 Sum_probs=77.1
Q ss_pred CCCCCCCCCCCCCCCcEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeC-Ceeec
Q 022381 74 PALDSTSEPPPLFDGTTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHN-NEVKG 152 (298)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~-g~~l~ 152 (298)
+++++.+++++..+|+++||+.+.||+|+|++++|+++|++ |+.+.++...+++++.+ +||.|+||+|+++ |.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl~--~~~~~v~~~~~~~~~~~-~np~~~vPvL~~~~g~~l~ 79 (89)
T cd03055 3 KHLAKGSAEPPPVPGIIRLYSMRFCPYAQRARLVLAAKNIP--HEVININLKDKPDWFLE-KNPQGKVPALEIDEGKVVY 79 (89)
T ss_pred cccccCCCCCCCCCCcEEEEeCCCCchHHHHHHHHHHcCCC--CeEEEeCCCCCcHHHHh-hCCCCCcCEEEECCCCEEE
Confidence 45677778777899999999999999999999999999999 67777887666778887 9999999999976 89999
Q ss_pred CcHHHHHHHH
Q 022381 153 ESLDLMKFID 162 (298)
Q Consensus 153 eS~aI~~yL~ 162 (298)
||.+|++||+
T Consensus 80 eS~aI~~yLe 89 (89)
T cd03055 80 ESLIICEYLD 89 (89)
T ss_pred CHHHHHHhhC
Confidence 9999999996
No 27
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.79 E-value=3.4e-19 Score=127.82 Aligned_cols=74 Identities=28% Similarity=0.577 Sum_probs=69.8
Q ss_pred EEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhhCCCC
Q 022381 92 LYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHFEGP 168 (298)
Q Consensus 92 Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~~~~~ 168 (298)
||++..||||+|+|++|+++||+ ++.+.++..++.+++.+ +||.|+||+|++||.+++||.+|++||+++|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~--~~~~~v~~~~~~~~~~~-~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIP--YELVPVDPEEKRPEFLK-LNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEE--EEEEEEBTTSTSHHHHH-HSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCe--EEEeccCcccchhHHHh-hcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 89999999999999999999999 88888888877888998 9999999999999999999999999999999864
No 28
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.77 E-value=9.8e-19 Score=128.87 Aligned_cols=70 Identities=23% Similarity=0.484 Sum_probs=66.3
Q ss_pred CCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhhCCCC
Q 022381 96 YTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHFEGP 168 (298)
Q Consensus 96 ~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~~~~~ 168 (298)
..||||+|+|++|++|||+ |+++.+++.++++||++ +||.|+||+|+++|.+|+||.+|++||++.++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~--ye~~~vd~~~~p~~~~~-~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVV--FNVTTVDMKRKPEDLKD-LAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCc--eEEEEeCCCCCCHHHHH-hCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 5799999999999999999 88899999999999998 9999999999999999999999999999998754
No 29
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.75 E-value=4.8e-18 Score=120.89 Aligned_cols=73 Identities=29% Similarity=0.433 Sum_probs=67.8
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhhC
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHF 165 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~~ 165 (298)
|+||+.+.||+|+|++++|+++|++ |+.+.++..++++++++ +||.|+||+|++||..++||.+|++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~--~~~~~v~~~~~~~~~~~-~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVS--VEIIDVDPDNPPEDLAE-LNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCc--cEEEEcCCCCCCHHHHh-hCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999 77778888777788987 9999999999999999999999999999875
No 30
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.75 E-value=3.6e-18 Score=121.77 Aligned_cols=70 Identities=20% Similarity=0.416 Sum_probs=63.0
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCC---CCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHH
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDL---QNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFID 162 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~---~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~ 162 (298)
++||+++.||+++||+++|+++|++ |+.+.++. ..++++|.+ +||.|+||+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~--~e~~~v~~~~~~~~~~~~~~-inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLR--CEEYDVSLPLSEHNEPWFMR-LNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCC--CEEEEecCCcCccCCHHHHH-hCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999 66777766 345778997 9999999999999999999999999995
No 31
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.74 E-value=8.7e-18 Score=120.08 Aligned_cols=73 Identities=29% Similarity=0.479 Sum_probs=66.6
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCC-CCccEEeeCCeeecCcHHHHHHHHhhC
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLA-NKVPSLEHNNEVKGESLDLMKFIDSHF 165 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~-gkvP~L~~~g~~l~eS~aI~~yL~~~~ 165 (298)
|+||+++.||+|+|++++|+++|++ ++.+.++...+++++++ +||. |+||+|++||.+++||.+|++||++.+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~--~~~~~~~~~~~~~~~~~-~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVP--YEYVEEDLGNKSELLLA-SNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCC--CEEEEeCcccCCHHHHH-hCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 6899999999999999999999999 67777777777788887 9995 999999999999999999999999875
No 32
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.73 E-value=1.1e-17 Score=120.49 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=64.6
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCC-CchhhhhhcCCCCCccEEee--CCeeecCcHHHHHHHHhhC
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQN-RPDWYMEKVHLANKVPSLEH--NNEVKGESLDLMKFIDSHF 165 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~-~~~~~~~~~nP~gkvP~L~~--~g~~l~eS~aI~~yL~~~~ 165 (298)
|++||+++.||||+||+++|+++||+ |+.+.++... ..+++++ +||.|+||+|++ +|.+++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~--y~~~~v~~~~~~~~~~~~-~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELD--VILYPCPKGSPKRDKFLE-KGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCc--EEEEECCCChHHHHHHHH-hCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 48999999999999999999999999 6777776543 3567886 999999999996 4789999999999999875
No 33
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.71 E-value=5.7e-17 Score=116.34 Aligned_cols=73 Identities=22% Similarity=0.353 Sum_probs=64.8
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC---CCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhh
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ---NRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSH 164 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~---~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~ 164 (298)
.++||+.+.||+|+++|++|+++|++ ++.+.++.. .+++++.+ +||.|+||+|+++|.+++||.+|++||+++
T Consensus 1 ~~~Ly~~~~s~~s~~v~~~l~~~~i~--~~~~~~~~~~~~~~~~~~~~-~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 1 VLKLYGAAMSTCVRRVLLCLEEKGVD--YELVPVDLTKGEHKSPEHLA-RNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred CeEEEeCCCChhHHHHHHHHHHcCCC--cEEEEeCccccccCCHHHHh-hCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 37999999999999999999999999 666666653 45678887 999999999999999999999999999874
No 34
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.70 E-value=4.8e-17 Score=116.08 Aligned_cols=71 Identities=23% Similarity=0.338 Sum_probs=63.5
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC---CCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHh
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ---NRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDS 163 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~---~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~ 163 (298)
|+||+++.||+|++++++|+++|++ |+.+.++.. .+.+++++ +||.|+||+|+++|.+++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~--~e~~~i~~~~~~~~~~~~~~-~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLE--LNLKEVNLMKGEHLKPEFLK-LNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCC--CEEEEecCccCCcCCHHHHh-hCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 5899999999999999999999999 667777753 24578887 99999999999999999999999999975
No 35
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.70 E-value=5.3e-17 Score=115.09 Aligned_cols=68 Identities=31% Similarity=0.516 Sum_probs=63.0
Q ss_pred EEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeC-CeeecCcHHHHHHH
Q 022381 91 RLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHN-NEVKGESLDLMKFI 161 (298)
Q Consensus 91 ~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~-g~~l~eS~aI~~yL 161 (298)
+||++..||||+|++++|+++|++ ++.+.++..++++++++ +||.|+||+|+++ |..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~--~e~~~v~~~~~~~~~~~-~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGIT--VELREVELKNKPAEMLA-ASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCC--cEEEEeCCCCCCHHHHH-HCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 799999999999999999999999 77888888777788987 9999999999974 99999999999996
No 36
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.70 E-value=8.2e-17 Score=117.08 Aligned_cols=74 Identities=18% Similarity=0.354 Sum_probs=65.2
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC---CCchhhhhhcCCCCCccEEeeC---CeeecCcHHHHHHHH
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ---NRPDWYMEKVHLANKVPSLEHN---NEVKGESLDLMKFID 162 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~---~~~~~~~~~~nP~gkvP~L~~~---g~~l~eS~aI~~yL~ 162 (298)
+++||+++. |+|+|++++|+++||+ ++.+.++.. ++.++|++ +||.|+||+|+++ |.+|+||.+|++||+
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~--~~~~~~~~~~~~~~~~~~~~-~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~ 76 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLP--YEIHPVDISKGEQKKPEFLK-INPNGRIPAIVDHNGTPLTVFESGAILLYLA 76 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCC--cEEEEecCcCCcccCHHHHH-hCcCCCCCEEEeCCCCceEEEcHHHHHHHHH
Confidence 589999986 9999999999999999 666666652 45678987 9999999999987 899999999999999
Q ss_pred hhCC
Q 022381 163 SHFE 166 (298)
Q Consensus 163 ~~~~ 166 (298)
++|+
T Consensus 77 ~~~~ 80 (81)
T cd03048 77 EKYD 80 (81)
T ss_pred HHhC
Confidence 9986
No 37
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.69 E-value=5.8e-16 Score=132.73 Aligned_cols=174 Identities=21% Similarity=0.298 Sum_probs=119.4
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHh-----
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDS----- 163 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~----- 163 (298)
.++||.+..||||.|||.+|.+.||+ |++++|++-.+.+ . |.+...|||+|..+|+.+.||.+|+.-|..
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgis--Y~VVEVnpV~r~e-I--k~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~ 164 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGIS--YAVVEVNPVLRQE-I--KWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDK 164 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCc--eEEEEecchhhhh-c--cccccccccEEEeccceechhHHHHHHHHHHhccC
Confidence 69999999999999999999999999 8999999865544 2 377899999999878889999999877743
Q ss_pred ---------hCCCCCC------------------CCC-C----HHhHHHHHHHHHHHhHhH-----HHHHhhc-------
Q 022381 164 ---------HFEGPSL------------------FPD-D----PAKREFAEELFSYTDTFN-----KTVRSSL------- 199 (298)
Q Consensus 164 ---------~~~~~~L------------------~p~-~----~~~~a~~~~~~~~~~~~~-----~~~~~~~------- 199 (298)
.||..+. +.+ | .+.+..-+.|-.|+|+.+ +++|...
T Consensus 165 ~q~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletF 244 (370)
T KOG3029|consen 165 RQDLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETF 244 (370)
T ss_pred CCCHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHH
Confidence 2331000 001 1 112234455666666311 1111110
Q ss_pred -----cCC------------------------------------h-HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHH
Q 022381 200 -----QGD------------------------------------G-NEASAAFDYLETALSKFNDGPFLLGH-FSIADIA 236 (298)
Q Consensus 200 -----~~~------------------------------------~-~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~ 236 (298)
.|+ . +.+.++.+.+-..|.+ +++|+.|+ |++||+.
T Consensus 245 ewf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgk--nr~flGG~kPnLaDLs 322 (370)
T KOG3029|consen 245 EWFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGK--NRPFLGGKKPNLADLS 322 (370)
T ss_pred HHHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCC--CCCccCCCCCchhhhh
Confidence 011 0 4455566666666653 89999999 9999999
Q ss_pred HHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcC
Q 022381 237 YAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKN 273 (298)
Q Consensus 237 l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~ 273 (298)
+|+.|.-+..... ..+.. ...++..|+-+|++.
T Consensus 323 vfGvl~sm~gc~a---fkd~~-q~t~I~eW~~rmeal 355 (370)
T KOG3029|consen 323 VFGVLRSMEGCQA---FKDCL-QNTSIGEWYYRMEAL 355 (370)
T ss_pred hhhhhhHhhhhhH---HHHHH-hcchHHHHHHHHHHH
Confidence 9999988774431 12333 568999999999863
No 38
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.69 E-value=1.1e-16 Score=114.93 Aligned_cols=73 Identities=19% Similarity=0.385 Sum_probs=64.7
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCC---CchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhhC
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQN---RPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHF 165 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~---~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~~ 165 (298)
++||+++.|+++++++++|+++|++ ++.+.++..+ +.+++.+ +||.|+||+|+++|.+++||.||++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~--~~~~~v~~~~~~~~~~~~~~-~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIP--FEECPIDLRKGEQLTPEFKK-INPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCC--cEEEEecCCCCCcCCHHHHH-hCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5799999999999999999999999 6667776532 3567887 9999999999999999999999999999875
No 39
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.68 E-value=8e-17 Score=114.83 Aligned_cols=72 Identities=8% Similarity=0.072 Sum_probs=64.0
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhh
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSH 164 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~ 164 (298)
++||+++.|++++++|++|+++|++ ++.+.++.....+++++ +||.|+||+|++||.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~--~e~~~v~~~~~~~~~~~-~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGIS--WEEERVTYEEWQESLKP-KMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCC--CEEEEecHHHhhhhhhc-cCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 7999999999999999999999999 67777766444556777 999999999999999999999999999863
No 40
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.67 E-value=1.4e-16 Score=112.65 Aligned_cols=67 Identities=31% Similarity=0.579 Sum_probs=54.5
Q ss_pred CChhHHHHHHHHHHcCCCcceeEeec--CCCCCchhhhhhcCCCCCccEEee-CCeeecCcHHHHHHHHhh
Q 022381 97 TCPYAQRVWITRNCKGLQEKIKLVPI--DLQNRPDWYMEKVHLANKVPSLEH-NNEVKGESLDLMKFIDSH 164 (298)
Q Consensus 97 ~sp~~~rvrl~L~~~gi~~~~~~~~v--~~~~~~~~~~~~~nP~gkvP~L~~-~g~~l~eS~aI~~yL~~~ 164 (298)
+|||++|++++|+++||+|++..+.. +...++++|.+ +||.|+||+|++ +|.+++||.+|++||++.
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~-~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLA-LNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHH-HSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhc-cCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999965555422 12345688998 999999999996 899999999999999974
No 41
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.66 E-value=2.6e-16 Score=111.77 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=62.7
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC---CCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHH
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ---NRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFID 162 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~---~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~ 162 (298)
++||+++.||+|++++++|+++|++ ++.+.++.. .+.+++++ +||.|+||+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~-~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIP--YEWVEVDILKGETRTPEFLA-LNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCC--cEEEEecCCCcccCCHHHHH-hCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999 666777653 35688887 9999999999999999999999999984
No 42
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.66 E-value=1.3e-15 Score=130.03 Aligned_cols=173 Identities=18% Similarity=0.176 Sum_probs=124.4
Q ss_pred CCCcEEEEecCC-------ChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHH
Q 022381 86 FDGTTRLYISYT-------CPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLM 158 (298)
Q Consensus 86 ~~~~~~Ly~~~~-------sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~ 158 (298)
..+.+-||.++. ||||.|+...|+..+|| ||.+.- ++.. .+..|++|.++-||+.+.||..|.
T Consensus 42 kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~Ip--YE~~~~-------~~~~-rSr~G~lPFIELNGe~iaDS~~I~ 111 (281)
T KOG4244|consen 42 KKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIP--YEIVDC-------SLKR-RSRNGTLPFIELNGEHIADSDLIE 111 (281)
T ss_pred ccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCC--ceeccc-------ccee-eccCCCcceEEeCCeeccccHHHH
Confidence 556789999964 99999999999999999 666542 2333 788999999999999999999999
Q ss_pred HHHHhhCCCCCCCCCCHHhHHHHHHHHHHHh-HhHH-----------------------------------------HHH
Q 022381 159 KFIDSHFEGPSLFPDDPAKREFAEELFSYTD-TFNK-----------------------------------------TVR 196 (298)
Q Consensus 159 ~yL~~~~~~~~L~p~~~~~~a~~~~~~~~~~-~~~~-----------------------------------------~~~ 196 (298)
.+|.++|.-+..+ .++++++...+...++ .+.. .++
T Consensus 112 ~~L~~hf~~~~~L--~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~ 189 (281)
T KOG4244|consen 112 DRLRKHFKIPDDL--SAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVY 189 (281)
T ss_pred HHHHHHcCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence 9999999754423 3446666665555544 1110 001
Q ss_pred hhcc---CC----h--HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHH
Q 022381 197 SSLQ---GD----G--NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAW 266 (298)
Q Consensus 197 ~~~~---~~----~--~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w 266 (298)
.... |+ + +.+.+.|+.++..|. +++||+|+ +|-+|+.+|+.|..+..-.......-+.+++|+|.+|
T Consensus 190 ~r~~g~IG~f~~~Ei~ell~rDlr~i~~~Lg---~KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eY 266 (281)
T KOG4244|consen 190 KRSTGAIGDFESAEIDELLHRDLRAISDYLG---DKKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEY 266 (281)
T ss_pred HHhhccccCcCHHHHHHHHHHHHHHHHHHhC---CCccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHH
Confidence 1111 11 0 445788888999998 79999999 9999999999988765310111111133789999999
Q ss_pred HHHHhcC
Q 022381 267 IEEMNKN 273 (298)
Q Consensus 267 ~~r~~~~ 273 (298)
++||++.
T Consensus 267 ceRIr~~ 273 (281)
T KOG4244|consen 267 CERIRKE 273 (281)
T ss_pred HHHHHHH
Confidence 9999863
No 43
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.66 E-value=2.2e-16 Score=112.40 Aligned_cols=70 Identities=23% Similarity=0.366 Sum_probs=63.9
Q ss_pred EEEEecCCChhHHHHHHHHHH--cCCCcceeEeecCCCCCchhhhhhcCCCCCccEEe-eCCeeecCcHHHHHHHH
Q 022381 90 TRLYISYTCPYAQRVWITRNC--KGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE-HNNEVKGESLDLMKFID 162 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~--~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~-~~g~~l~eS~aI~~yL~ 162 (298)
++||+++.||+|+|+|++|++ +|++ ++.+.++...+.+++++ +||.|+||+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~--~~~~~~~~~~~~~~~~~-~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDD--VELVLVNPWSDDESLLA-VNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCC--cEEEEcCcccCChHHHH-hCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8888 78888887777788887 99999999998 58899999999999986
No 44
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.65 E-value=3.7e-16 Score=111.93 Aligned_cols=70 Identities=19% Similarity=0.295 Sum_probs=63.2
Q ss_pred EEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC--CCchhhhhhcCCCCCccEEee-CCeeecCcHHHHHHHHh
Q 022381 91 RLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ--NRPDWYMEKVHLANKVPSLEH-NNEVKGESLDLMKFIDS 163 (298)
Q Consensus 91 ~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~--~~~~~~~~~~nP~gkvP~L~~-~g~~l~eS~aI~~yL~~ 163 (298)
+||+++.||++++++++|+++|++ ++.+.++.. .+.++|++ +||.|+||+|++ +|.+++||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~--~~~~~v~~~~~~~~~~~~~-~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLD--VEIVDFQPGKENKTPEFLK-KFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCc--eEEEecccccccCCHHHHH-hCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999 777777764 46788997 999999999996 58999999999999986
No 45
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.3e-15 Score=122.36 Aligned_cols=170 Identities=17% Similarity=0.280 Sum_probs=117.4
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEe-eCCeeecCcHHHHHHHHhhCCCC
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE-HNNEVKGESLDLMKFIDSHFEGP 168 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 168 (298)
|+||.+..||||-|+|++..++||| ++.......+... =.+ +-...+||+|+ ++|..+.||..|++|+++..+.+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nip--ve~~vL~nDDe~T-p~r-miG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIP--VELHVLLNDDEET-PIR-MIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCC--hhhheeccCcccC-hhh-hhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 6899999999999999999999999 5555544432111 111 45568899999 89999999999999999998764
Q ss_pred CCCCCCHHhHHHHHHHHHHHhHhHHH-HHhhc-------------------cCCh----------------HHHHHHHHH
Q 022381 169 SLFPDDPAKREFAEELFSYTDTFNKT-VRSSL-------------------QGDG----------------NEASAAFDY 212 (298)
Q Consensus 169 ~L~p~~~~~~a~~~~~~~~~~~~~~~-~~~~~-------------------~~~~----------------~~~~~~L~~ 212 (298)
-|-. +-+..++.|...+...... ++..+ +.+. .++...|+.
T Consensus 77 ~lt~---~~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~ 153 (215)
T COG2999 77 LLTG---KVRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRA 153 (215)
T ss_pred hhcc---CcCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHH
Confidence 3422 1233455555544422111 11111 1110 556778888
Q ss_pred HHHHHhccCCCCcccCCCCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCccc
Q 022381 213 LETALSKFNDGPFLLGHFSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAF 276 (298)
Q Consensus 213 le~~L~~~~~~~fl~G~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 276 (298)
++..+. +..=+.|.+++-||.+|++|..+..+ .|..|. .++..|+++|.+.-.+
T Consensus 154 l~~Li~---~~s~~n~~l~~ddi~vFplLRnlt~v----~gi~wp---s~v~dy~~~msektqV 207 (215)
T COG2999 154 LDKLIV---GPSAVNGELSEDDILVFPLLRNLTLV----AGIQWP---SRVADYRDNMSEKTQV 207 (215)
T ss_pred HHHHhc---CcchhccccchhhhhhhHHhccceec----ccCCCc---HHHHHHHHHHHHhhCc
Confidence 888887 33445666999999999999877643 266665 6899999999876544
No 46
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.65 E-value=5.5e-16 Score=111.08 Aligned_cols=73 Identities=23% Similarity=0.300 Sum_probs=64.0
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC---CCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhhCC
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ---NRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHFE 166 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~---~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~~~ 166 (298)
|+||+++. +++++++++|+++|++ ++.+.++.. .+.+++++ +||.|+||+|+++|.+++||.+|++||+++|+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~--~~~~~~~~~~~~~~~~~~~~-~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLP--YELVLYDRGPGEQAPPEYLA-INPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCC--cEEEEeCCCCCccCCHHHHh-cCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58999875 6899999999999999 566666653 46788887 99999999999999999999999999999875
No 47
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.65 E-value=3.8e-16 Score=110.62 Aligned_cols=70 Identities=26% Similarity=0.480 Sum_probs=59.9
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeC-CeeecCcHHHHHHHHh
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHN-NEVKGESLDLMKFIDS 163 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~-g~~l~eS~aI~~yL~~ 163 (298)
|+||++..||||+|+|++|.++|++ |+.+.++.... ....+ .||.|+||+|+++ |.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~--~~~~~~~~~~~-~~~~~-~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIP--VEQIILQNDDE-ATPIR-MIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCC--eEEEECCCCch-HHHHH-hcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 6899999999999999999999999 67777775432 23445 8999999999975 8999999999999985
No 48
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.65 E-value=3.1e-16 Score=111.38 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=61.5
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCC-chhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHh
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNR-PDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDS 163 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~-~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~ 163 (298)
++||+++.|++|+++|++|+++|++ |+.+.++.... .+.+.+ +||.|+||+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~--~e~~~~~~~~~~~~~~~~-~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVE--YEDVRITYEEWPELDLKP-TLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCC--cEEEEeCHHHhhhhhhcc-CCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 5899999999999999999999999 66777776432 233776 99999999999999999999999999974
No 49
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.65 E-value=2.2e-15 Score=118.00 Aligned_cols=118 Identities=66% Similarity=1.081 Sum_probs=93.7
Q ss_pred CHHhHHHHHHHHHHHhHhHHHHHhhc-cCCh-HHHHHHHHHHHHHHhccCCCCcccCCCCHHHHHHHHHHHHHhhhhhhh
Q 022381 174 DPAKREFAEELFSYTDTFNKTVRSSL-QGDG-NEASAAFDYLETALSKFNDGPFLLGHFSIADIAYAPFIERYQPFLLEV 251 (298)
Q Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~L~~le~~L~~~~~~~fl~G~~T~ADi~l~~~l~~~~~~~~~~ 251 (298)
|+.+|+.+++++.+.+.+...++... .+.. +++.+.++.||+.|+.+++++|++|++|+|||++++++.++.......
T Consensus 1 d~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Le~~L~~~~~~~fl~G~~tlADi~l~~~~~~~~~~~~~~ 80 (120)
T cd03203 1 DPAKREFADELLAYTDAFTKALYSSLIKGDPSAEAAAALDYIENALSKFDDGPFFLGQFSLVDIAYVPFIERFQIFLSEL 80 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcCCCCCcCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 56789999999998666665554443 3333 788999999999998433579999999999999999998776433233
Q ss_pred ccCCCCCCChHHHHHHHHHhcCcccccccCChHHHHHHHH
Q 022381 252 KKNDITAGRPKLAAWIEEMNKNEAFNQTRRDPKELVETYK 291 (298)
Q Consensus 252 ~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~~~~~~~~~ 291 (298)
.+.++.+++|+|.+|+++|.++|+|+++.+..+++++.++
T Consensus 81 ~~~~~~~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~~~~~ 120 (120)
T cd03203 81 FNYDITEGRPNLAAWIEEMNKIEAYTQTKQDPQELLDLAK 120 (120)
T ss_pred cCccccccCcHHHHHHHHHhcchHHHhHcCCHHHHHhhhC
Confidence 4566656899999999999999999999999888887653
No 50
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.65 E-value=4.2e-16 Score=110.89 Aligned_cols=70 Identities=33% Similarity=0.525 Sum_probs=61.1
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC---CCchhhhhhcCCCCCccEEe-eCCeeecCcHHHHHHHH
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ---NRPDWYMEKVHLANKVPSLE-HNNEVKGESLDLMKFID 162 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~---~~~~~~~~~~nP~gkvP~L~-~~g~~l~eS~aI~~yL~ 162 (298)
|+||+++.||+|+|++++|+++|++ ++.+.++.. .+.+++.+ +||.|+||+|+ +||..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~--~~~~~v~~~~~~~~~~~~~~-~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGID--VPLVTVDLAAGEQRSPEFLA-KNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCC--ceEEEeecccCccCCHHHHh-hCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999 566666653 34577887 99999999999 57889999999999986
No 51
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.64 E-value=5.8e-16 Score=110.28 Aligned_cols=70 Identities=17% Similarity=0.195 Sum_probs=61.4
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC---CCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHH
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ---NRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFID 162 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~---~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~ 162 (298)
++||+++.||++++++++|+++|++ |+.+.++.. .+.+++++ +||.|+||+|+++|..|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~--~~~~~~~~~~~~~~~~~~~~-~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLP--YERIDAGGQFGGLDTPEFLA-MNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCC--CEEEEeccccccccCHHHHh-hCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999 566666542 34577887 9999999999999999999999999984
No 52
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.64 E-value=6.6e-16 Score=111.12 Aligned_cols=73 Identities=25% Similarity=0.386 Sum_probs=63.4
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC---CCchhhhhhcCCCCCccEEeeC-CeeecCcHHHHHHHHhhC
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ---NRPDWYMEKVHLANKVPSLEHN-NEVKGESLDLMKFIDSHF 165 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~---~~~~~~~~~~nP~gkvP~L~~~-g~~l~eS~aI~~yL~~~~ 165 (298)
|+||+++.+ ++++|+++|+++|++ ++.+.++.. .+++++++ +||.|+||+|+++ |..++||.+|++||+++|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~--~~~~~~~~~~~~~~~~~~~~-~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~ 76 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLP--FELVRVDLRTKTQKGADYLA-INPKGQVPALVLDDGEVLTESAAILQYLADLH 76 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCC--ceEEEEecccCccCCHhHHH-hCCCCCCCEEEECCCcEEEcHHHHHHHHHHhC
Confidence 589999865 689999999999999 666666663 35788987 9999999999976 899999999999999988
Q ss_pred C
Q 022381 166 E 166 (298)
Q Consensus 166 ~ 166 (298)
|
T Consensus 77 p 77 (77)
T cd03057 77 P 77 (77)
T ss_pred c
Confidence 5
No 53
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.63 E-value=8.3e-16 Score=109.20 Aligned_cols=70 Identities=29% Similarity=0.436 Sum_probs=62.6
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC---CCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHH
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ---NRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFID 162 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~---~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~ 162 (298)
|+||++..|+++++++++|+++|++ |+.+.++.. .+.+++++ +||.|+||+|+++|.+++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~--~~~~~~~~~~~~~~~~~~~~-~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLD--YEYVPVNLLKGEQLSPAYRA-LNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCC--CeEEEecCccCCcCChHHHH-hCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999 666677652 45678887 9999999999999999999999999985
No 54
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.63 E-value=1.4e-15 Score=108.91 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=60.1
Q ss_pred cEEEEecC-------CChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHH
Q 022381 89 TTRLYISY-------TCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFI 161 (298)
Q Consensus 89 ~~~Ly~~~-------~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL 161 (298)
+++||+++ .||+|+||+++|+++|++ |+.+.++. .+ +||.|+||+|+++|.+++||.+|++||
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~--~~~~~~~~-------~~-~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIP--YENKFGGL-------AK-RSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCC--cEEeecCc-------cc-CCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 47899997 589999999999999999 66666653 23 899999999999999999999999999
Q ss_pred HhhCC
Q 022381 162 DSHFE 166 (298)
Q Consensus 162 ~~~~~ 166 (298)
+++|+
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99874
No 55
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.62 E-value=1.2e-15 Score=109.68 Aligned_cols=72 Identities=19% Similarity=0.316 Sum_probs=62.0
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeC----CeeecCcHHHHHHHHhh
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHN----NEVKGESLDLMKFIDSH 164 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~----g~~l~eS~aI~~yL~~~ 164 (298)
+++||+++.||||+|++++|+++||+ |+.+.++....++ + + .||.|+||+|+++ |.+++||.+|++||++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~--y~~~~~~~~~~~~-~-~-~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~ 75 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIP--YEVVEVNPVSRKE-I-K-WSSYKKVPILRVESGGDGQQLVDSSVIISTLKTY 75 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCc--eEEEECCchhHHH-H-H-HhCCCccCEEEECCCCCccEEEcHHHHHHHHHHH
Confidence 48999999999999999999999999 7777777644333 3 4 7999999999965 78999999999999987
Q ss_pred C
Q 022381 165 F 165 (298)
Q Consensus 165 ~ 165 (298)
.
T Consensus 76 ~ 76 (77)
T cd03040 76 L 76 (77)
T ss_pred c
Confidence 4
No 56
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.58 E-value=6.2e-15 Score=107.45 Aligned_cols=73 Identities=11% Similarity=0.077 Sum_probs=59.9
Q ss_pred EEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCC----Cchhhhhhc----CCCCCccEEeeCCeeecCcHHHHHHHH
Q 022381 91 RLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQN----RPDWYMEKV----HLANKVPSLEHNNEVKGESLDLMKFID 162 (298)
Q Consensus 91 ~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~----~~~~~~~~~----nP~gkvP~L~~~g~~l~eS~aI~~yL~ 162 (298)
+||++..++.|++++++|+++||+ |+.+.+++.. +.+++.... +|.|+||+|++||.+++||.||++||+
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~--~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEK--YEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCC--cEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHh
Confidence 789999999999999999999999 6777777643 123333212 299999999999999999999999999
Q ss_pred hhC
Q 022381 163 SHF 165 (298)
Q Consensus 163 ~~~ 165 (298)
++|
T Consensus 80 ~~~ 82 (82)
T cd03075 80 RKH 82 (82)
T ss_pred hcC
Confidence 875
No 57
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.57 E-value=1e-14 Score=104.77 Aligned_cols=71 Identities=20% Similarity=0.332 Sum_probs=57.4
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC---CCchhhhhhcCCC-CCccEEeeC-CeeecCcHHHHHHHHh
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ---NRPDWYMEKVHLA-NKVPSLEHN-NEVKGESLDLMKFIDS 163 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~---~~~~~~~~~~nP~-gkvP~L~~~-g~~l~eS~aI~~yL~~ 163 (298)
|+|++++..++++++|++|+++|++ |+.+.++.. ++.+++++ .||. |+||+|+++ |.+|+||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~--~e~~~v~~~~~~~~~~e~~~-~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVE--YEDVRVDFEKGEHKSPEFLA-INPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT----EEEEEEETTTTGGGSHHHHH-HTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhccc--CceEEEecccccccchhhhh-cccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 4555555556999999999999999 667777763 23477887 9999 999999999 9999999999999985
No 58
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.57 E-value=7.5e-15 Score=107.47 Aligned_cols=67 Identities=21% Similarity=0.351 Sum_probs=56.9
Q ss_pred CCChhHHHHHHHHHHcCCCcceeEeecCCCCC---chhhhhhcCCCCCccEEeeC-CeeecCcHHHHHHHHhhCC
Q 022381 96 YTCPYAQRVWITRNCKGLQEKIKLVPIDLQNR---PDWYMEKVHLANKVPSLEHN-NEVKGESLDLMKFIDSHFE 166 (298)
Q Consensus 96 ~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~---~~~~~~~~nP~gkvP~L~~~-g~~l~eS~aI~~yL~~~~~ 166 (298)
..||+|+|+|++|+++||+ |+.+.++...+ .+++ + +||.|+||+|+++ |.+++||.+|++||+++||
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~--~~~~~~~~~~~~~~~~~~-~-~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLE--YKTVPVEFPDIPPILGEL-T-SGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCC--CeEEEecCCCcccccccc-c-CCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 5799999999999999999 66666665432 2334 4 8999999999998 8999999999999999875
No 59
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.57 E-value=1.1e-14 Score=105.30 Aligned_cols=72 Identities=10% Similarity=0.116 Sum_probs=60.4
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcC-----CCCCccEEeeCCeeecCcHHHHHHHHh
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVH-----LANKVPSLEHNNEVKGESLDLMKFIDS 163 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~n-----P~gkvP~L~~~g~~l~eS~aI~~yL~~ 163 (298)
+++||+++.++.+++++++|+++|++ ++.+.++.. +++.+ .| |.|+||+|++||.+|+||.||++||.+
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~--~e~~~v~~~---~~~~~-~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVE--FEEKFIESA---EDLEK-LKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAG 74 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCC--cEEEEeccH---HHHHh-hccccCCCCCCCCEEEECCEEEeeHHHHHHHHHH
Confidence 36899999999999999999999999 666666642 22222 33 589999999999999999999999999
Q ss_pred hCC
Q 022381 164 HFE 166 (298)
Q Consensus 164 ~~~ 166 (298)
+|+
T Consensus 75 ~~~ 77 (79)
T cd03077 75 KYN 77 (79)
T ss_pred HcC
Confidence 986
No 60
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.54 E-value=2e-14 Score=102.43 Aligned_cols=65 Identities=18% Similarity=0.343 Sum_probs=56.5
Q ss_pred cCCChhHHHHHHHHHHcCCCcceeEeecCCC--CCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHH
Q 022381 95 SYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ--NRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFID 162 (298)
Q Consensus 95 ~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~--~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~ 162 (298)
...||+++|++++|+++|++ |+.+.++.. .+.++|++ +||.|+||+|+++|.+++||.+|++||.
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~--~e~~~v~~~~~~~~~~~~~-~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIP--FEEILVPLYTPDTRARILE-FSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCC--CEEEEeCCCCccccHHHHh-hCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 35799999999999999999 666666654 34578887 9999999999999999999999999984
No 61
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.53 E-value=9.9e-14 Score=109.10 Aligned_cols=115 Identities=22% Similarity=0.287 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHhHhHHHHHhhccCCh------HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhh
Q 022381 177 KREFAEELFSYTDTFNKTVRSSLQGDG------NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLL 249 (298)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~ 249 (298)
+|++.+.|+.+++.+...++..+..++ +.+.+.|+.+|+.|++ ++++|++|+ +|+||+++++++.++..+..
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~~yl~G~~~t~aDi~~~~~~~~~~~~~~ 80 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYKLLGAPSDREEKKAELRSALENLEEELTK-RGTPFFGGDSPGMVDYMIWPWFERLEALKL 80 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHHHHhccccchhhHHHHHHHHHHHHHHHHh-cCCCCcCCCCccHHHHHhhHHHHHHHHHHh
Confidence 478888999888877666665543211 7788999999999983 148999999 99999999999988765432
Q ss_pred hhccCCCCCCChHHHHHHHHHhcCcccccccCChHHHHHHHHH
Q 022381 250 EVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDPKELVETYKK 292 (298)
Q Consensus 250 ~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~~~~~~~~~~ 292 (298)
........+.+|+|.+|+++|.++|+|++++.+.+..++.++.
T Consensus 81 ~~~~~~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~~ 123 (124)
T cd03184 81 LLGYEFPLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLKS 123 (124)
T ss_pred hccccCCcccChHHHHHHHHhccChHHHHHhCCHHHHHHHHhc
Confidence 1111112368999999999999999999999999999988874
No 62
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.52 E-value=5.2e-14 Score=98.07 Aligned_cols=70 Identities=31% Similarity=0.494 Sum_probs=60.7
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCch-hhhhhcCCCCCccEEeeCCeeecCcHHHHHHHH
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPD-WYMEKVHLANKVPSLEHNNEVKGESLDLMKFID 162 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~-~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~ 162 (298)
++||+++.||+|++++++|+++|++ |+.+.++...... ++.+ .+|.+++|+|+++|.+++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~--~~~~~~~~~~~~~~~~~~-~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLP--YELVPVDLGEGEQEEFLA-LNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCC--cEEEEeCCCCCCCHHHHh-cCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999 6666666644333 4776 9999999999999999999999999985
No 63
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.52 E-value=1.1e-13 Score=111.55 Aligned_cols=117 Identities=22% Similarity=0.259 Sum_probs=89.0
Q ss_pred HhHHHHHHHHHHHh-HhHHHHHhhc-cCCh-------HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHh
Q 022381 176 AKREFAEELFSYTD-TFNKTVRSSL-QGDG-------NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQ 245 (298)
Q Consensus 176 ~~~a~~~~~~~~~~-~~~~~~~~~~-~~~~-------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~ 245 (298)
+.++.+++|++|.. .+...++... ..+. +++.+.|+.||+.|+ +++|++|+ +|+|||++++++.++.
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~---~~~yl~Gd~~TlADi~l~~~l~~~~ 79 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLS---DRRYLLGDRLTEADIRLFTTLIRFD 79 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHc---cCCeeeCCCccHHHHHHHHHHHHHH
Confidence 36788999999987 3444444432 2221 667889999999998 68999999 9999999999988765
Q ss_pred hhhhhhc--cCCCCCCChHHHHHHHHHhcCcccccccCChHHHHHHHHHHhh
Q 022381 246 PFLLEVK--KNDITAGRPKLAAWIEEMNKNEAFNQTRRDPKELVETYKKRFA 295 (298)
Q Consensus 246 ~~~~~~~--~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~~~~~~~~~~~~~ 295 (298)
.+..... +....+.||+|.+|+++|.++|+|+++...++...++++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~~~~~~ 131 (142)
T cd03190 80 AVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYYGSHFP 131 (142)
T ss_pred HHhhhhcccccchhhhCchHHHHHHHHhcCchHhhhcCHHHHHHHHHhhcCC
Confidence 3321111 1122358999999999999999999999988888888888754
No 64
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.50 E-value=2.8e-13 Score=106.14 Aligned_cols=87 Identities=18% Similarity=0.375 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCC
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRD 282 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~ 282 (298)
+++.+.|+.||+.|.. +++|++|+ +|+||+++++++.++........+..+.+.+|+|.+|+++|.+||+|+++++.
T Consensus 33 ~~l~~~l~~Le~~L~~--~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~~~t~~~ 110 (121)
T cd03201 33 QALLDELEALEDHLKE--NGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESFVKTKAE 110 (121)
T ss_pred HHHHHHHHHHHHHHhc--CCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchhhhcCCC
Confidence 6788899999999983 47999999 99999999998887764333222344447899999999999999999999999
Q ss_pred hHHHHHHHHH
Q 022381 283 PKELVETYKK 292 (298)
Q Consensus 283 ~~~~~~~~~~ 292 (298)
.+++++.|+.
T Consensus 111 ~~~~~~~~~~ 120 (121)
T cd03201 111 KEDVIAGWAP 120 (121)
T ss_pred HHHHHHHhcc
Confidence 9999998864
No 65
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.47 E-value=7e-13 Score=104.16 Aligned_cols=113 Identities=28% Similarity=0.379 Sum_probs=85.3
Q ss_pred HhHHHHHHHHHHHh-HhHHHHHhhccC-Ch------HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhh
Q 022381 176 AKREFAEELFSYTD-TFNKTVRSSLQG-DG------NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQP 246 (298)
Q Consensus 176 ~~~a~~~~~~~~~~-~~~~~~~~~~~~-~~------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~ 246 (298)
.+++.+++|+.+.+ .+...+...+.. +. +++.+.++.||+.|+ +++|++|+ +|+|||++++++.++..
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~t~ADi~l~~~~~~~~~ 78 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELG---GKPFFGGDTIGYVDIALGSFLGWFRA 78 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCCCcchHHHHHHHHHHHHHH
Confidence 46888999998876 343333222211 11 667889999999998 57999999 99999999999988764
Q ss_pred hhhhhccCCC--CCCChHHHHHHHHHhcCcccccccCChHHHHHHHHH
Q 022381 247 FLLEVKKNDI--TAGRPKLAAWIEEMNKNEAFNQTRRDPKELVETYKK 292 (298)
Q Consensus 247 ~~~~~~~~~~--~~~~p~L~~w~~r~~~~p~~~~~~~~~~~~~~~~~~ 292 (298)
... ..+.+. .+.+|++.+|+++|.++|+|+++....+...+.+++
T Consensus 79 ~~~-~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~~ 125 (126)
T cd03185 79 YEE-VGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDRDKLVEFAKA 125 (126)
T ss_pred HHH-HcCccccCcccCchHHHHHHHHHhccHHHHhCCCHHHHHHHHHh
Confidence 321 123331 367999999999999999999999998888776654
No 66
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.47 E-value=2e-13 Score=96.88 Aligned_cols=58 Identities=19% Similarity=0.207 Sum_probs=52.2
Q ss_pred CChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhh
Q 022381 97 TCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSH 164 (298)
Q Consensus 97 ~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~ 164 (298)
.||+|++++++|+++||+ |+.+.++.. . +||.|+||+|+++|.++.||.+|++||+++
T Consensus 15 ~sp~~~~v~~~L~~~~i~--~~~~~~~~~-------~-~~p~g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 15 LSPECLKVETYLRMAGIP--YEVVFSSNP-------W-RSPTGKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CCHHHHHHHHHHHhCCCc--eEEEecCCc-------c-cCCCcccCEEEECCEEEcCHHHHHHHHhhC
Confidence 799999999999999999 777777642 2 789999999999999999999999999875
No 67
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.47 E-value=4.8e-13 Score=105.95 Aligned_cols=88 Identities=20% Similarity=0.268 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHhcc-------------CCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHH
Q 022381 204 NEASAAFDYLETALSKF-------------NDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEE 269 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~-------------~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r 269 (298)
+.+.+.|+.||+.|.+. .+++|++|+ +|+|||.+++.+.++..+.....+..+...+|+|.+|+++
T Consensus 32 ~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~~P~L~aw~~r 111 (134)
T cd03198 32 KGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPADLTGLWRYLKN 111 (134)
T ss_pred HHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccccCHHHHHHHHH
Confidence 67889999999999840 137899999 9999999999998886544333355655789999999999
Q ss_pred HhcCcccccccCChHHHHHHHH
Q 022381 270 MNKNEAFNQTRRDPKELVETYK 291 (298)
Q Consensus 270 ~~~~p~~~~~~~~~~~~~~~~~ 291 (298)
|.+||+|+++++..++++..|+
T Consensus 112 i~aRPsfk~t~~~~~~i~~~~~ 133 (134)
T cd03198 112 AYQREEFTNTCPADQEIELAYK 133 (134)
T ss_pred HHCCHHHHHHcCCHHHHHHHhc
Confidence 9999999999999999988875
No 68
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.43 E-value=1.5e-12 Score=99.39 Aligned_cols=96 Identities=18% Similarity=0.331 Sum_probs=73.8
Q ss_pred HhHHHHHHHHHHHhH-hHHHHHhhccC-Ch------HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhh
Q 022381 176 AKREFAEELFSYTDT-FNKTVRSSLQG-DG------NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQP 246 (298)
Q Consensus 176 ~~~a~~~~~~~~~~~-~~~~~~~~~~~-~~------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~ 246 (298)
.+|++++.|+.+++. +...+.....+ +. +.+.+.|+.||+.|+ +++|++|+ +|+|||++++.+.++..
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~t~aDi~~~~~~~~~~~ 78 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFA---HKPYFMSEEFSLVDCALAPLLWRLPA 78 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHc---CCCcccCCCCcHHHHHHHHHHHHHHH
Confidence 478999999999874 44433322211 11 567889999999998 68999999 99999999999865542
Q ss_pred hhhhhccCCCCCCChHHHHHHHHHhcCcccccc
Q 022381 247 FLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQT 279 (298)
Q Consensus 247 ~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~ 279 (298)
.+.++...+|+|.+|+++|.+||+|+++
T Consensus 79 -----~~~~~~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 79 -----LGIELPKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred -----cCCCCcccchHHHHHHHHHHCCHHHHHh
Confidence 2444445899999999999999999875
No 69
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.37 E-value=5.1e-12 Score=98.07 Aligned_cols=102 Identities=25% Similarity=0.366 Sum_probs=76.4
Q ss_pred CCHHhHHHHHHHHHHHhH-hHHHHHhhc----cC--Ch----HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHH
Q 022381 173 DDPAKREFAEELFSYTDT-FNKTVRSSL----QG--DG----NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPF 240 (298)
Q Consensus 173 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~----~~--~~----~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~ 240 (298)
.|+..++.+++|..+.+. +.+.+.... .. +. +++.+.++.||+.|+ +++|++|+ +|+|||+++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~---~~~yl~Gd~~tlADi~l~~~ 78 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQ---QHSYLLGDKPSLADWAIFPF 78 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHc---cCCccCCCCccHHHHHHHHH
Confidence 478899999999999874 333332211 11 11 678899999999998 57999999 99999999998
Q ss_pred HHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCccccccc
Q 022381 241 IERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTR 280 (298)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~ 280 (298)
+.++.... ..... ..++|+|.+|+++|.++|+|++++
T Consensus 79 l~~~~~~~--~~~~~-~~~~P~L~~w~~r~~~rpa~~~~~ 115 (115)
T cd03196 79 VRQFAHVD--PKWFD-QSPYPRLRRWLNGFLASPLFSKIM 115 (115)
T ss_pred HHHHHHhh--hcccC-cccCHHHHHHHHHHHcChHHHhhC
Confidence 87654321 11112 368999999999999999998753
No 70
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.33 E-value=9.1e-12 Score=97.45 Aligned_cols=100 Identities=13% Similarity=0.205 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHhHhHHHHHhhccC-C--h------HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhh
Q 022381 177 KREFAEELFSYTDTFNKTVRSSLQG-D--G------NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQP 246 (298)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~~-~--~------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~ 246 (298)
+++.++++.+.+.++...++..+.. + . +.+.+.++.||+.|+ +++|++|+ +|+||+++++++.++..
T Consensus 2 e~~~id~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~T~aDi~l~~~~~~~~~ 78 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGLARICYSPDFEKLKPDYLAKLPDKLKLFSDFLG---DRPWFAGDKITYVDFLLYEALDQHRI 78 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhC---CCCCcCCCCccHHHHHHHHHHHHHHH
Confidence 5678888888888777665443221 1 1 557789999999998 57899999 99999999999988763
Q ss_pred hhhhhccCCCCCCChHHHHHHHHHhcCcccccccCChH
Q 022381 247 FLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDPK 284 (298)
Q Consensus 247 ~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~~ 284 (298)
. +....+.||+|.+|++++.++|++++++.+..
T Consensus 79 ~-----~~~~~~~~P~l~~~~~rv~~~p~vk~~~~~~~ 111 (121)
T cd03209 79 F-----EPDCLDAFPNLKDFLERFEALPKISAYMKSDR 111 (121)
T ss_pred h-----CccccccChHHHHHHHHHHHCHHHHHHHhccc
Confidence 2 12224689999999999999999999987653
No 71
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.31 E-value=1.5e-11 Score=96.93 Aligned_cols=102 Identities=14% Similarity=0.171 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHhHhHHHHHhhccCCh--------HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhh
Q 022381 177 KREFAEELFSYTDTFNKTVRSSLQGDG--------NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPF 247 (298)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~ 247 (298)
+++.++++.+.+.++...+...+.... +.+.+.|..||+.|++.++++|++|+ +|+||+++++++.++...
T Consensus 3 e~~~vd~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~ 82 (126)
T cd03210 3 EAALIDMVNDGVEDLRLKYVRMIYQNYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVL 82 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHh
Confidence 567788888877776665443322111 55788999999999841136899999 999999999999887632
Q ss_pred hhhhccCCCCCCChHHHHHHHHHhcCcccccccCCh
Q 022381 248 LLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDP 283 (298)
Q Consensus 248 ~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~ 283 (298)
. ......+|+|.+|+++|.++|+|++++...
T Consensus 83 ~-----~~~~~~~P~l~~~~~rv~~~p~v~~~~~~~ 113 (126)
T cd03210 83 A-----PGCLDAFPLLKAFVERLSARPKLKAYLESD 113 (126)
T ss_pred C-----hHhhhcChHHHHHHHHHHhCcHHHHHHhCc
Confidence 1 112368999999999999999999987654
No 72
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.28 E-value=3.1e-11 Score=96.65 Aligned_cols=101 Identities=16% Similarity=0.174 Sum_probs=76.8
Q ss_pred hHHHHHHHHHHHhHhHHHHHhhcc-CC-h----------HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHH
Q 022381 177 KREFAEELFSYTDTFNKTVRSSLQ-GD-G----------NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIER 243 (298)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~-~~-~----------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~ 243 (298)
+.+.++++++.+.++...++.... .. . +.+.+.|+.||+.|+. ++++|++|+ +|+||+++++.+.+
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~-~~~~~l~G~~~T~ADi~l~~~l~~ 81 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKS-HGQDFLVGNKLSRADIHLLEAILM 81 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCeeeCCCCCHHHHHHHHHHHH
Confidence 577888888888777665554331 11 1 3456889999999973 257899999 99999999999988
Q ss_pred HhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCCh
Q 022381 244 YQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDP 283 (298)
Q Consensus 244 ~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~ 283 (298)
+... .......||+|.+|+++|.++|++++++...
T Consensus 82 ~~~~-----~~~~l~~~P~l~~~~~rv~~~P~vk~~~~~~ 116 (137)
T cd03208 82 VEEL-----DPSLLSDFPLLQAFKTRISNLPTIKKFLQPG 116 (137)
T ss_pred HHHh-----chhhhccChHHHHHHHHHHcCHHHHHHHhcC
Confidence 7632 1223468999999999999999999988753
No 73
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.27 E-value=5.3e-11 Score=89.29 Aligned_cols=93 Identities=19% Similarity=0.363 Sum_probs=74.7
Q ss_pred HHHHHhhCCCCCCCCCCHHhHHHHHHHHHHHh-HhHHHHHhhccCChHHHHHHHHHHHHHHhccCCCCcccCC-CCHHHH
Q 022381 158 MKFIDSHFEGPSLFPDDPAKREFAEELFSYTD-TFNKTVRSSLQGDGNEASAAFDYLETALSKFNDGPFLLGH-FSIADI 235 (298)
Q Consensus 158 ~~yL~~~~~~~~L~p~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi 235 (298)
++||.+.- .|+|.++.+.+.+++|++... .+. .++..++.+.++.+|+.|+ +++|++|+ +|+|||
T Consensus 1 ~r~~~~~~---~~~~~~~~~~~~vd~~~d~~~~~l~-------~~~~~~~~~~l~~le~~L~---~~~fl~Gd~~tiADi 67 (96)
T cd03200 1 ARFLYRLL---GPAPNAPNAATNIDSWVDTAIFQLA-------EGSSKEKAAVLRALNSALG---RSPWLVGSEFTVADI 67 (96)
T ss_pred CchHHHHh---cccCCCchHHHHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHHHc---CCCccCCCCCCHHHH
Confidence 47888882 499999999999999998655 333 2344677799999999998 68999999 999999
Q ss_pred HHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhc
Q 022381 236 AYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNK 272 (298)
Q Consensus 236 ~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~ 272 (298)
++++.+.+. +.. ...+|+|.+|++||.+
T Consensus 68 ~l~~~l~~~--------~~~-~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 68 VSWCALLQT--------GLA-SAAPANVQRWLKSCEN 95 (96)
T ss_pred HHHHHHHHc--------ccc-cccChHHHHHHHHHHh
Confidence 999887542 222 2579999999999976
No 74
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.27 E-value=1.9e-11 Score=93.99 Aligned_cols=95 Identities=23% Similarity=0.392 Sum_probs=71.0
Q ss_pred hHHHHHHHHHHHh-HhHHHHHhhc-----cC--C--h-------HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHH
Q 022381 177 KREFAEELFSYTD-TFNKTVRSSL-----QG--D--G-------NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYA 238 (298)
Q Consensus 177 ~~a~~~~~~~~~~-~~~~~~~~~~-----~~--~--~-------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~ 238 (298)
+|+.+++|+.+.+ .+.+.+.... .. + . +.+.+.++.+|+.|+ +++|++|+ +|+|||+++
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~---~~~~l~G~~~t~aDi~~~ 78 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLA---GGPYLLGDRFSVADAYLF 78 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhc---CCCeeeCCCcchHHHHHH
Confidence 4788899988886 3443321111 00 0 1 567889999999998 68899999 999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCccccccc
Q 022381 239 PFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTR 280 (298)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~ 280 (298)
+.+.++... +.++ +++|+|.+|+++|.++|+|++++
T Consensus 79 ~~~~~~~~~-----~~~~-~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 79 VVLRWAPGV-----GLDL-SDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHHHHhhc-----CCCh-hhChHHHHHHHHHHhCHHhHhhC
Confidence 998876531 3333 47999999999999999998863
No 75
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.26 E-value=7.6e-11 Score=91.26 Aligned_cols=95 Identities=21% Similarity=0.312 Sum_probs=72.0
Q ss_pred CHHhHHHHHHHHHHHh-HhHHHHHhhc-------c----CC--h-------HHHHHHHHHHHHHHhccCCCCcccCC-CC
Q 022381 174 DPAKREFAEELFSYTD-TFNKTVRSSL-------Q----GD--G-------NEASAAFDYLETALSKFNDGPFLLGH-FS 231 (298)
Q Consensus 174 ~~~~~a~~~~~~~~~~-~~~~~~~~~~-------~----~~--~-------~~~~~~L~~le~~L~~~~~~~fl~G~-~T 231 (298)
|+.+++.+++|+.+++ .+...+...+ . +. . +++.+.|+.||+.|+ +++|++|+ +|
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~---~~~~l~gd~~t 77 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLA---GSPYVAGDRFT 77 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhc---CCCcccCCCCC
Confidence 4678999999999876 4433222111 1 11 1 567889999999998 57899999 99
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCccc
Q 022381 232 IADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAF 276 (298)
Q Consensus 232 ~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 276 (298)
+|||++++.+.++... +.++...+|+|.+|++++.++|++
T Consensus 78 ~aDi~l~~~~~~~~~~-----~~~~~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 78 IADITAFVGLDFAKVV-----KLRVPEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHHHHhHHHHhc-----CCCCccccHHHHHHHHHHHhccCC
Confidence 9999999999877532 445556899999999999999974
No 76
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.23 E-value=3e-11 Score=85.60 Aligned_cols=65 Identities=15% Similarity=0.146 Sum_probs=50.8
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhh
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSH 164 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~ 164 (298)
...|+. .+++|.|++++|++.|+| |+.+.. .+ ... .+|.|+||+|++||.+|+||.+|+.||.++
T Consensus 10 ~~~~~~--~~~~~~kv~~~L~elglp--ye~~~~--~~--~~~---~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 10 EQILLP--DNASCLAVQTFLKMCNLP--FNVRCR--AN--AEF---MSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CeeecC--CCCCHHHHHHHHHHcCCC--cEEEec--CC--ccc---cCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 344443 467899999999999999 565532 11 111 678999999999999999999999999864
No 77
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.19 E-value=9.3e-11 Score=90.78 Aligned_cols=70 Identities=23% Similarity=0.488 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCccccccc
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTR 280 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~ 280 (298)
+.+.+.|+.||+.|+ +++|++|+ +|+|||++++++.++.... .....+++|+|.+|+++|.++|+|++++
T Consensus 48 ~~~~~~l~~le~~L~---~~~~l~G~~~t~aDi~l~~~~~~~~~~~----~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 48 EKLKKVLDVYEARLS---KSKYLAGDSFTLADLSHLPYLQYLMATP----FAKLFDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHHHHHHHcc---cCcccCCCCccHHHHHHHHHHHHHHHcc----chhhhhcCchHHHHHHHHHhCHHHHhhC
Confidence 567888999999998 68999999 9999999999988875311 1112357999999999999999998763
No 78
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.19 E-value=3e-10 Score=88.22 Aligned_cols=94 Identities=19% Similarity=0.278 Sum_probs=70.8
Q ss_pred CCCHHhHHHHHHHHHHHh-HhHHHH----Hh-hccC----------Ch-------HHHHHHHHHHHHHHhccCCCCcccC
Q 022381 172 PDDPAKREFAEELFSYTD-TFNKTV----RS-SLQG----------DG-------NEASAAFDYLETALSKFNDGPFLLG 228 (298)
Q Consensus 172 p~~~~~~a~~~~~~~~~~-~~~~~~----~~-~~~~----------~~-------~~~~~~L~~le~~L~~~~~~~fl~G 228 (298)
|.++.+++++++|+.+.. .+...+ +. .... +. +++.+.|+.||+.|+ +++|++|
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G 78 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLA---KKGYFVG 78 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHc---cCCCCCC
Confidence 568889999999998876 333322 11 1111 01 467889999999998 6899999
Q ss_pred C-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCc
Q 022381 229 H-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNE 274 (298)
Q Consensus 229 ~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p 274 (298)
+ +|+|||++++.+.++... +.. ...+|+|.+|++++.++|
T Consensus 79 d~~t~ADi~l~~~~~~~~~~-----~~~-~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 79 DKLTAADIMMSFPLEAALAR-----GPL-LEKYPNIAAYLERIEARP 119 (119)
T ss_pred CCCCHHHHHHHHHHHHHHHc-----Ccc-cccCchHHHHHHHHhcCC
Confidence 9 999999999888877532 222 468999999999999986
No 79
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.17 E-value=1.1e-10 Score=91.11 Aligned_cols=100 Identities=25% Similarity=0.309 Sum_probs=73.3
Q ss_pred HhHHHHHHHHHHHh-HhHH----HHHhhc---cC--Ch-------HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHH
Q 022381 176 AKREFAEELFSYTD-TFNK----TVRSSL---QG--DG-------NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAY 237 (298)
Q Consensus 176 ~~~a~~~~~~~~~~-~~~~----~~~~~~---~~--~~-------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l 237 (298)
.+++.+++|+.+++ .+.. .++... .+ +. +.+.+.|+.||+.|++. +++|++|+ +|+|||++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~~~l~G~~~t~ADi~~ 80 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQT-AGKFCFGDEPTLADICL 80 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeecCCcCCHHHHHH
Confidence 46888999998876 3321 122111 11 11 45788899999999731 24799999 99999999
Q ss_pred HHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCC
Q 022381 238 APFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRD 282 (298)
Q Consensus 238 ~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~ 282 (298)
++.+.++... +.++ ..+|+|.+|++++.++|+|+++.+.
T Consensus 81 ~~~~~~~~~~-----~~~~-~~~p~l~~w~~~~~~~p~~~~~~~~ 119 (121)
T cd03191 81 VPQVYNARRF-----GVDL-SPYPTIARINEACLELPAFQAAHPD 119 (121)
T ss_pred HHHHHHHHHh-----CCCc-ccCcHHHHHHHHHHhChhHHHhCcC
Confidence 9998766522 3333 6899999999999999999998764
No 80
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.17 E-value=1.9e-10 Score=89.34 Aligned_cols=97 Identities=21% Similarity=0.461 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHh-HhHHHH----Hhhc-cCCh------HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHH
Q 022381 177 KREFAEELFSYTD-TFNKTV----RSSL-QGDG------NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIER 243 (298)
Q Consensus 177 ~~a~~~~~~~~~~-~~~~~~----~~~~-~~~~------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~ 243 (298)
+++++++|+.+.. .+...+ +... ..+. +++.+.|+.||+.|+ +++|++|+ +|+||+++++++.+
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~s~aDi~l~~~~~~ 78 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLE---GSDYVAGDQLTIADLSLVATVST 78 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHc---cCCeeCCCCcCHHHHHHHHHHHH
Confidence 4677888887764 233221 1111 1111 678899999999997 57899999 99999999999988
Q ss_pred HhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccC
Q 022381 244 YQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRR 281 (298)
Q Consensus 244 ~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~ 281 (298)
+... .+.+. ..+|+|.+|+++|.++|+|++...
T Consensus 79 ~~~~----~~~~~-~~~p~l~~w~~~~~~~p~~~~~~~ 111 (118)
T cd03177 79 LEAL----LPLDL-SKYPNVRAWLERLKALPPYEEANG 111 (118)
T ss_pred HHHh----cCCCh-hhCchHHHHHHHHHcccchHHHHH
Confidence 7631 13333 479999999999999999998653
No 81
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.16 E-value=7.9e-11 Score=90.58 Aligned_cols=69 Identities=28% Similarity=0.485 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCccccccc
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTR 280 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~ 280 (298)
+.+.+.++.+|+.|+ +++|++|+ +|+|||++++++.+.... +.++.+.+|++.+|+++|.++|+|++++
T Consensus 43 ~~~~~~l~~le~~L~---~~~~l~G~~~t~aDi~l~~~~~~~~~~-----~~~~~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 43 NEAKRLYGVLDKRLA---GRDYLAGDEYSIADIAIFPWVRRLEWI-----GIDDLDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred HHHHHHHHHHHHHHc---cCCcccCCCCCeeeeeHHHHHHHHHhc-----cccchhhchHHHHHHHHHhhCHHHHHhc
Confidence 667889999999998 68999999 999999999999887533 2333468999999999999999999865
No 82
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.16 E-value=1.5e-10 Score=86.12 Aligned_cols=63 Identities=32% Similarity=0.585 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCC-CCChHHHHHHHHHhcCc
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDIT-AGRPKLAAWIEEMNKNE 274 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~-~~~p~L~~w~~r~~~~p 274 (298)
.++.+.|+.+|+.|+ +++|++|+ +|+||+++++++.++... +.... ++||+|.+|+++|.+||
T Consensus 31 ~~~~~~l~~le~~l~---~~~~l~G~~~t~ADi~~~~~~~~~~~~-----~~~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 31 AKVPRYLEVLEKRLK---GGPYLVGDKLTIADIALFPMLDWLERL-----GPDFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHH---TSSSSSBSS-CHHHHHHHHHHHHHHHH-----TTTTTHTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHc---CCCeeeccCCchhHHHHHHHHHHHHHh-----CCCcccccCHHHHHHHHHHHcCC
Confidence 667889999999999 79999999 999999999999988755 33443 79999999999999997
No 83
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.15 E-value=9.3e-11 Score=88.81 Aligned_cols=69 Identities=28% Similarity=0.471 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCC
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRD 282 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~ 282 (298)
+++.+.++.||+.|+ +++|++|+ +|+|||++++++.++... + +..++|+|.+|+++|.++|+|+++...
T Consensus 33 ~~~~~~l~~le~~l~---~~~~l~g~~~t~aDi~~~~~~~~~~~~-----~--~~~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 33 GSYDDVLAALEQALA---KGPYLLGERFTAADVLVGSPLGWGLQF-----G--LLPERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred hhHHHHHHHHHHHHc---cCCcccCCccCHHHHHHHHHHHHHHHc-----C--CCCCChHHHHHHHHHHcCHHHHHHhcc
Confidence 668999999999998 67899999 999999999999887532 2 236899999999999999999988753
No 84
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.14 E-value=1.9e-10 Score=90.42 Aligned_cols=70 Identities=36% Similarity=0.572 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhc--Cccccccc
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNK--NEAFNQTR 280 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~--~p~~~~~~ 280 (298)
+.+.+.++.+|+.|.+ +++|++|+ +|+|||++++.+.+.... +.++.+.+|+|.+|+++|.+ ||+|+++.
T Consensus 48 ~~~~~~l~~le~~l~~--~~~~l~Gd~~t~ADi~l~~~~~~~~~~-----~~~~~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 48 ENLEESLDLLENYFLK--DKPFLAGDEISIADLSAVCEIMQPEAA-----GYDVFEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHHHHHHHHhc--CCCcccCCCCCHHHHHHHHHHHHHHhc-----CCcccccCchHHHHHHHHHHhcchhHHHHH
Confidence 5678889999997542 57899999 999999999988766522 44444689999999999999 99998855
No 85
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.1e-09 Score=90.50 Aligned_cols=170 Identities=13% Similarity=0.083 Sum_probs=118.6
Q ss_pred CCCcEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhhC
Q 022381 86 FDGTTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHF 165 (298)
Q Consensus 86 ~~~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~~ 165 (298)
....+-|+.+ .-|..|..+|++.++| +.++.. ...+| ++|.|+||.|..|.+++.|-..|+.+.+.+-
T Consensus 25 e~eQiLl~d~---ascLAVqtfLrMcnLP--f~v~~~----~Naef---mSP~G~vPllr~g~~~~aef~pIV~fVeak~ 92 (257)
T KOG3027|consen 25 EAEQILLPDN---ASCLAVQTFLRMCNLP--FNVRQR----ANAEF---MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKG 92 (257)
T ss_pred cccccccccc---hhHHHHHHHHHHcCCC--ceeeec----CCccc---cCCCCCCceeeecchhhhhhhHHHHHHHHhc
Confidence 3344444444 4578999999999999 444332 23455 8899999999999999999999999999985
Q ss_pred CCCCCCC-CCHHhHHHHHHHHHHHhHhHHH--HHhhc------------------------------------------c
Q 022381 166 EGPSLFP-DDPAKREFAEELFSYTDTFNKT--VRSSL------------------------------------------Q 200 (298)
Q Consensus 166 ~~~~L~p-~~~~~~a~~~~~~~~~~~~~~~--~~~~~------------------------------------------~ 200 (298)
- .|-. -+..+++.++.+++.++.++.. +|-.+ .
T Consensus 93 ~--~l~s~lsE~qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W 170 (257)
T KOG3027|consen 93 V--TLTSWLSEDQKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDW 170 (257)
T ss_pred c--chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCc
Confidence 3 2311 2445778788877777643321 00000 0
Q ss_pred CCh------HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhcc-CCCCCCChHHHHHHHHHhc
Q 022381 201 GDG------NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKK-NDITAGRPKLAAWIEEMNK 272 (298)
Q Consensus 201 ~~~------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~-~~~~~~~p~L~~w~~r~~~ 272 (298)
++. +++....+.|+..|+ ..+||.|+ ||.+|..+|+.+..+....-.... ....++|++|-++.+|+++
T Consensus 171 ~~~~~DqVie~vdkc~~aLsa~L~---~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq 247 (257)
T KOG3027|consen 171 DDKTMDQVIEQVDKCCRALSAQLG---SQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQ 247 (257)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhc---CCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHH
Confidence 000 566778888888888 69999999 999999999998877643211111 1234789999999999986
No 86
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.13 E-value=1.3e-10 Score=90.75 Aligned_cols=102 Identities=18% Similarity=0.265 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHh-HhHHHH---Hh-hcc---CCh-------HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHH
Q 022381 177 KREFAEELFSYTD-TFNKTV---RS-SLQ---GDG-------NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPF 240 (298)
Q Consensus 177 ~~a~~~~~~~~~~-~~~~~~---~~-~~~---~~~-------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~ 240 (298)
+++.+++|+.+.+ .+...+ +. ... .+. +.+.+.|+.||+.|+ +++|++|+ +|+||+++++.
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~---~~~~l~G~~~siaDi~l~~~ 77 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLL---KRTYLVGERLTLADIFVAGA 77 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHc---cCceeccCCccHHHHHHHHH
Confidence 3677888888776 333322 11 111 011 667889999999998 57899999 99999999999
Q ss_pred HHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccCChH
Q 022381 241 IERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRRDPK 284 (298)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~~~~ 284 (298)
+.++..... +..+.+.+|++.+|++++.++|+|++++.+.+
T Consensus 78 ~~~~~~~~~---~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 118 (123)
T cd03181 78 LLLGFTYVF---DKEWRAKYPNVTRWFNTVVNQPIFKAVFGEVK 118 (123)
T ss_pred HHHHHHHHc---CHHHHHhChHHHHHHHHHHcCHHHHHHcCCCC
Confidence 988643211 11123579999999999999999999887643
No 87
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.12 E-value=5e-10 Score=86.72 Aligned_cols=96 Identities=14% Similarity=0.143 Sum_probs=72.6
Q ss_pred HhHHHHHHHHHHHh-HhHHHHH----hh-cc-C----Ch----HHHHHHHHHHHHHHhccCCCCcccCCCCHHHHHHHHH
Q 022381 176 AKREFAEELFSYTD-TFNKTVR----SS-LQ-G----DG----NEASAAFDYLETALSKFNDGPFLLGHFSIADIAYAPF 240 (298)
Q Consensus 176 ~~~a~~~~~~~~~~-~~~~~~~----~~-~~-~----~~----~~~~~~L~~le~~L~~~~~~~fl~G~~T~ADi~l~~~ 240 (298)
.+++++++|+.+++ ++..... .. +. . .. +.+.+.++.+|..|+. +++|++|++|+||++++++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~--~~~~l~G~fSiAD~~l~~~ 79 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPP--GAANLFGEWCIADTDLALM 79 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhc--CCCcccCCccHHHHHHHHH
Confidence 57889999999987 4443211 11 11 1 11 5668888889999962 5589999999999999999
Q ss_pred HHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccC
Q 022381 241 IERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRR 281 (298)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~ 281 (298)
+.|.... +.++ . |++.+|++||.+||+|++.+.
T Consensus 80 ~~~~~~~-----g~~l-~--p~l~ay~~r~~~rPa~~~~~~ 112 (114)
T cd03195 80 LNRLVLN-----GDPV-P--ERLRDYARRQWQRPSVQAWLA 112 (114)
T ss_pred HHHHHHc-----CCCC-C--HHHHHHHHHHHCCHHHHHHHh
Confidence 9988743 5555 2 999999999999999998764
No 88
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.12 E-value=7.5e-10 Score=84.48 Aligned_cols=64 Identities=23% Similarity=0.441 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCccc
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAF 276 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 276 (298)
+.+.+.|+.||+.|+ +++|++|+ +|+||+++++++...... +.. ..++|+|.+|+++|.++|+|
T Consensus 46 ~~~~~~l~~lE~~L~---~~~~l~g~~~t~aDi~~~~~~~~~~~~-----~~~-~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 46 AAWAKLMAILDAQLA---GRPYLAGDRFTLADIPLGCSAYRWFEL-----PIE-RPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHHHHHHHHHHHhC---CCCcccCCCCCHHHHHHHHHHHHHHHc-----ccc-cccCchHHHHHHHHHhCCCC
Confidence 567889999999998 57899999 999999999988544311 222 36899999999999999986
No 89
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.10 E-value=5.1e-10 Score=80.83 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=63.2
Q ss_pred CCCcEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHH
Q 022381 86 FDGTTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFID 162 (298)
Q Consensus 86 ~~~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~ 162 (298)
.+.+++||+.++||+|.+++.+|+.+||+ |+.+.++-....+.+.. .++..+||++..||..+.++..|.+||+
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~--y~~idi~~~~~~~~~~~-~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGYD--FEEIPLGNDARGRSLRA-VTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCCC--cEEEECCCChHHHHHHH-HHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 56789999999999999999999999999 67777765433344555 7788999999999999999999999984
No 90
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.05 E-value=6.2e-10 Score=77.96 Aligned_cols=60 Identities=45% Similarity=0.670 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHH
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEE 269 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r 269 (298)
+++.+.|+.||+.|+ +++|++|+ +|+||+++++++.++..... +.++...+|+|.+|++|
T Consensus 9 ~~~~~~l~~le~~L~---~~~fl~G~~~s~aD~~l~~~l~~~~~~~~---~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 9 AQLEAALDALEDHLA---DGPFLFGDRPSLADIALAPFLWRLRFVGP---DFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHT---TSSBTTBSS--HHHHHHHHHHHHHHHCTH---TCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---hCCCCCCCCCCHHHHHHHHHHHHHHHhCc---CcCccccCHHHHHHHhC
Confidence 568889999999999 67799999 99999999999999987643 23445799999999986
No 91
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.05 E-value=7.6e-10 Score=84.98 Aligned_cols=68 Identities=26% Similarity=0.432 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHhcc-------CCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCC----CCCChHHHHHHHHHh
Q 022381 204 NEASAAFDYLETALSKF-------NDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDI----TAGRPKLAAWIEEMN 271 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~-------~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~----~~~~p~L~~w~~r~~ 271 (298)
+++.+.|+.||+.|.+. ++++|++|+ +|+|||++++++.++..+ +.+. ...||+|.+|++||.
T Consensus 32 ~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~-----~~~~~~~~~~~~P~l~~w~~rv~ 106 (111)
T cd03204 32 DELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFL-----GLSRRYWGNGKRPNLEAYFERVL 106 (111)
T ss_pred HHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHc-----CccccccccccChHHHHHHHHHH
Confidence 67889999999999831 012699999 999999999999887643 2222 257999999999999
Q ss_pred cCccc
Q 022381 272 KNEAF 276 (298)
Q Consensus 272 ~~p~~ 276 (298)
+||+|
T Consensus 107 aRpsf 111 (111)
T cd03204 107 QRESF 111 (111)
T ss_pred cCCCC
Confidence 99986
No 92
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.94 E-value=3.1e-09 Score=80.03 Aligned_cols=64 Identities=23% Similarity=0.407 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCccc
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAF 276 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 276 (298)
+++.+.++.+|+.|+ +++|++|+ +|+||+++++++.+... .+.. .+++|+|.+|+++|.++|+|
T Consensus 36 ~~~~~~l~~le~~L~---~~~~l~G~~~t~aDi~~~~~~~~~~~-----~~~~-~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 36 ARAHRLLRLLEEHLA---GRDWLAGDRPTIADVAVYPYVALAPE-----GGVD-LEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHc---cCCccCCCCCCHHHHHHHHHHHHHhc-----cCCC-hhhCcHHHHHHHHHHhCcCC
Confidence 678899999999998 57899999 99999999998865431 1222 35899999999999999986
No 93
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=98.94 E-value=5.3e-09 Score=74.25 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=48.9
Q ss_pred CChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhh
Q 022381 97 TCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSH 164 (298)
Q Consensus 97 ~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~ 164 (298)
.||+|.++.++|+..|++ |+++... . + . .+|.|++|+|+++|+.+.||..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~--~~v~~~~---n-~---~-~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAP--LKVVPSN---N-P---W-RSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCC--EEEEecC---C-C---C-CCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 489999999999999999 5554322 1 1 1 679999999999999999999999999875
No 94
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.91 E-value=8.6e-09 Score=79.78 Aligned_cols=70 Identities=26% Similarity=0.542 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCCCCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcccccccC
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGHFSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTRR 281 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~~ 281 (298)
+.+.+.++.+|..|+..++++|++|++|+||+++++++.++... +.++ .|+|.+|+++|.++|+|++.+.
T Consensus 44 ~~~~~~~~~le~~l~~~~~~~yl~Gd~T~ADi~l~~~~~~~~~~-----~~~~---~P~l~~~~~rv~~rPsv~~~~~ 113 (114)
T cd03194 44 ADIARIEAIWAECLARFQGGPFLFGDFSIADAFFAPVVTRFRTY-----GLPL---SPAAQAYVDALLAHPAMQEWIA 113 (114)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHHc-----CCCC---CHHHHHHHHHHHCCHHHHHHHh
Confidence 55667777777777543367899999999999999999887522 3332 3999999999999999988653
No 95
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=98.90 E-value=6.8e-09 Score=78.57 Aligned_cols=88 Identities=16% Similarity=0.226 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHhHhHHHHHhhccC-------Ch------HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHH
Q 022381 177 KREFAEELFSYTDTFNKTVRSSLQG-------DG------NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIE 242 (298)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~ 242 (298)
+++.++.+++..+++...+...+.. +. +.+.+.++.||+.|... +++|++|+ +|+||+++++++.
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~-~~~~~~G~~~s~aDi~l~~~~~ 80 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKEN-GGGYLVGDKLTWADLVVFDVLD 80 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCCeeeCCCccHHHHHHHHHHH
Confidence 4677888888777666655443321 11 66788999999999821 27899999 9999999999998
Q ss_pred HHhhhhhhhccCCC-CCCChHHHHHHHHH
Q 022381 243 RYQPFLLEVKKNDI-TAGRPKLAAWIEEM 270 (298)
Q Consensus 243 ~~~~~~~~~~~~~~-~~~~p~L~~w~~r~ 270 (298)
++... +... ...+|+|.+|++++
T Consensus 81 ~~~~~-----~~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 81 YLLYL-----DPKLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHhh-----CchhhHHhChhHHHHHHhC
Confidence 88643 2222 46899999999875
No 96
>PRK10638 glutaredoxin 3; Provisional
Probab=98.88 E-value=1e-08 Score=74.73 Aligned_cols=72 Identities=22% Similarity=0.360 Sum_probs=61.9
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCC-CchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHh
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQN-RPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDS 163 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~-~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~ 163 (298)
+++||..+.||||++++.+|+++||+ |+.+.++... ..+++.+ .++.++||++..||..+.....+..+-.+
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi~--y~~~dv~~~~~~~~~l~~-~~g~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGVS--FQEIPIDGDAAKREEMIK-RSGRTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCCC--cEEEECCCCHHHHHHHHH-HhCCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 58999999999999999999999999 7778777543 3566776 89999999999999999999888776543
No 97
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=98.87 E-value=1.2e-08 Score=72.13 Aligned_cols=71 Identities=23% Similarity=0.325 Sum_probs=59.4
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHH
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFID 162 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~ 162 (298)
+++||..+.||+|.+++-+|+.+|++ |+.+.++.......+.. .....+||++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~--~~~~~v~~~~~~~~~~~-~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGIS--YEEIPLGKDITGRSLRA-VTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCC--cEEEECCCChhHHHHHH-HhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 58999999999999999999999999 67777765433334444 6677899999999999999999999984
No 98
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=98.86 E-value=5.3e-09 Score=78.72 Aligned_cols=61 Identities=31% Similarity=0.524 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhc
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNK 272 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~ 272 (298)
+++.+.+..+|+.|+.. +++|++|+ +|+||+.+++.|..+.. . ++.+++|+|.+|++||++
T Consensus 38 ~~~~~~l~~l~~~L~~~-~~~~l~G~~~T~AD~~v~~~l~~~~~------~-~~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 38 EELPKALKILEKHLAER-GGDFLVGDKPTLADIAVFGFLASLRW------A-DFPKDYPNLVRWYERIEE 99 (99)
T ss_dssp HHHHHHHHHHHHHHHHT-SSSSSSSSS--HHHHHHHHHHHHHHC------C-HHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcC-CCeeecCCCCCHHHHHHHHHHHHHhh------c-ccccccHHHHHHHHhhcC
Confidence 77899999999999952 33499999 99999999998866542 1 122589999999999974
No 99
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.84 E-value=9.6e-09 Score=80.73 Aligned_cols=62 Identities=19% Similarity=0.167 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhc
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNK 272 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~ 272 (298)
+++.+.|+.+|+.|+ +++|+.|+ +|+||+++++++.+..... +.++.+.+|+|.+|++||.+
T Consensus 61 ~~~~~~l~~l~~~L~---~~~fl~Gd~~t~AD~~l~~~l~~~~~~~----~~~~~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 61 ANFRAALEPLRATLK---GQPFLGGAAPNYADYIVFGGFQWARIVS----PFPLLEEDDPVYDWFERCLD 123 (124)
T ss_pred HHHHHHHHHHHHHHc---CCCccCCCCCchhHHHHHHHHHHHHHcC----cccccccCChHHHHHHHHhc
Confidence 778999999999998 68999999 9999999999998886421 34444689999999999976
No 100
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.84 E-value=7.1e-09 Score=78.41 Aligned_cols=59 Identities=32% Similarity=0.508 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHh
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMN 271 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~ 271 (298)
+++.+.++.||+.|+ +++|++|+ +|+|||++++++.++... +.+ ..++|+|.+|+++++
T Consensus 46 ~~~~~~l~~le~~L~---~~~~l~g~~~slaDi~~~~~~~~~~~~-----~~~-~~~~p~l~~~~~~~~ 105 (105)
T cd03179 46 ERGHAALAVLEAHLA---GRDFLVGDALTIADIALAAYTHVADEG-----GFD-LADYPAIRAWLARIE 105 (105)
T ss_pred HHHHHHHHHHHHHHc---cCccccCCCCCHHHHHHHHHHHhcccc-----CCC-hHhCccHHHHHHhhC
Confidence 667889999999997 67899999 999999999999887532 333 357999999999874
No 101
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.70 E-value=6.7e-08 Score=68.49 Aligned_cols=69 Identities=25% Similarity=0.284 Sum_probs=56.7
Q ss_pred CcEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCC-CchhhhhhcCCCCCccEEeeCCeeecCcHHHHH
Q 022381 88 GTTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQN-RPDWYMEKVHLANKVPSLEHNNEVKGESLDLMK 159 (298)
Q Consensus 88 ~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~-~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~ 159 (298)
++++||+.+.||+|++++.+|+.+||+ |+.+.++... ..+++.+ +++.+++|++..||..+..-.+..+
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~--~~~~di~~~~~~~~el~~-~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLP--YVEINIDIFPERKAELEE-RTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCc--eEEEECCCCHHHHHHHHH-HhCCCCcCEEEECCEEEeCHHHHHh
Confidence 578999999999999999999999999 7777666432 2355776 8999999999999999887665543
No 102
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=98.69 E-value=4.4e-08 Score=71.93 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhh--ccCCCCCCChHHHHHHHHHh
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEV--KKNDITAGRPKLAAWIEEMN 271 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~--~~~~~~~~~p~L~~w~~r~~ 271 (298)
+++.+.++.+|+.|+ +++|++|+ +|+|||++++++.++....... .... .+++|+|.+|++||.
T Consensus 22 ~~~~~~l~~le~~L~---~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~-~~~~p~l~~~~~r~~ 88 (88)
T cd03193 22 SLAKKDLKALSDLLG---DKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLI-LKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHhC---CCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHH-HHhCcHHHHHHHHhC
Confidence 678899999999999 68999999 9999999999998875321000 0011 257999999999974
No 103
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=1.2e-06 Score=77.36 Aligned_cols=162 Identities=17% Similarity=0.234 Sum_probs=106.8
Q ss_pred CChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEe-eCCeeecCcHHHHHHHHhhCCCCCCCCCC-
Q 022381 97 TCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE-HNNEVKGESLDLMKFIDSHFEGPSLFPDD- 174 (298)
Q Consensus 97 ~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~-~~g~~l~eS~aI~~yL~~~~~~~~L~p~~- 174 (298)
.++-|..+.+++++.+-| .+++..+ ..| ..|.|++|+|+ ++|..+..-.-|+.+|...-.+..+-+..
T Consensus 16 id~~sL~~l~y~kl~~~~--l~v~~ss----N~~----~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~ 85 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAP--LKVVVSS----NPW----RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLS 85 (313)
T ss_pred cChhHHHHHHHHHHhCCC--ceeEeec----CCC----CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHH
Confidence 388999999999999966 4443322 122 57899999999 55699999999999999842221122211
Q ss_pred HHhHHHHHHHHHHHhH-hHH------------------HHHh-hc-----------------------cCCh--------
Q 022381 175 PAKREFAEELFSYTDT-FNK------------------TVRS-SL-----------------------QGDG-------- 203 (298)
Q Consensus 175 ~~~~a~~~~~~~~~~~-~~~------------------~~~~-~~-----------------------~~~~-------- 203 (298)
..+++....|+.+++. +.. .+|. .+ .|..
T Consensus 86 ~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~ 165 (313)
T KOG3028|consen 86 AKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIY 165 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHH
Confidence 3456666666666552 111 1111 00 0100
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhh-hhhc-cCCCCCCChHHHHHHHHHhc
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFL-LEVK-KNDITAGRPKLAAWIEEMNK 272 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~-~~~~-~~~~~~~~p~L~~w~~r~~~ 272 (298)
..+.++++.|.+.|+ ++.|++|| +|--|+.++..+..+-.+. +... ...+ ..++||.+|.+++..
T Consensus 166 ~~Aska~~~LS~~Lg---s~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l-~~~~NL~~~~~~i~s 233 (313)
T KOG3028|consen 166 KDASKALNLLSTLLG---SKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHL-LAHKNLVRYVERIRS 233 (313)
T ss_pred HHHHHHHHHHHHHhc---CceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHH-HhcchHHHHHHHHHH
Confidence 445778888888888 79999999 9999999999988733221 1000 0112 358999999999875
No 104
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.66 E-value=2.1e-07 Score=70.49 Aligned_cols=97 Identities=22% Similarity=0.316 Sum_probs=66.7
Q ss_pred CHHhHHHHHHHHHHHhHhHHHHHhhc------cC---Ch------HHHHHHHHHHHHHHhccCCCCcccCCCCHHHHHHH
Q 022381 174 DPAKREFAEELFSYTDTFNKTVRSSL------QG---DG------NEASAAFDYLETALSKFNDGPFLLGHFSIADIAYA 238 (298)
Q Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~------~~---~~------~~~~~~L~~le~~L~~~~~~~fl~G~~T~ADi~l~ 238 (298)
|..+|+.++++..|+.+-+..+.... .+ .+ ..+.+.+...+..|.. +++||+|+.|+||..++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~--g~~~LFGewsIAD~dlA 78 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLAD--GGPNLFGEWSIADADLA 78 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT----SSTTSS--HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhcc--CCCCccccchHHHHHHH
Confidence 56789999999999985333322211 11 11 5567778888888885 89999999999999999
Q ss_pred HHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCccccccc
Q 022381 239 PFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAFNQTR 280 (298)
Q Consensus 239 ~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~~~~~ 280 (298)
+++.++... |.++. +++.+|.++.-++|++++.+
T Consensus 79 ~ml~Rl~~~-----gd~vP---~~l~~Ya~~qwqrpsVQ~Wl 112 (117)
T PF14834_consen 79 LMLNRLVTY-----GDPVP---ERLADYAERQWQRPSVQRWL 112 (117)
T ss_dssp HHHHHHHTT-----T-------HHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHHHc-----CCCCC---HHHHHHHHHHHCCHHHHHHH
Confidence 999999743 44444 88999999999999998754
No 105
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=98.64 E-value=7.6e-08 Score=71.52 Aligned_cols=61 Identities=38% Similarity=0.629 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHH
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEM 270 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~ 270 (298)
+++.+.++.||+.|+ +++|++|+ +|+||+++++++.++....... .+.+.+|+|.+|+++|
T Consensus 39 ~~~~~~~~~l~~~L~---~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~~---~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 39 EELAAALAALEKLLA---GRPYLAGDRFSLADIALAPVLARLDLLGPLL---GLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHHHHHHHHHHHHHc---cCCCCCCCCcCHHHHHHHHHHHHHHHhhhhh---hhhccCccHHHHHHhC
Confidence 668889999999998 67899999 9999999999999987543211 1346899999999875
No 106
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.58 E-value=2.1e-07 Score=65.24 Aligned_cols=70 Identities=13% Similarity=0.234 Sum_probs=55.1
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCC-chhhhhhcCCCCCccEEeeCCeee--cCcHHHHHHH
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNR-PDWYMEKVHLANKVPSLEHNNEVK--GESLDLMKFI 161 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~-~~~~~~~~nP~gkvP~L~~~g~~l--~eS~aI~~yL 161 (298)
+++||+.++||+|++++.+|+.+|++ +..+.++.... .+++.+ .++.+.||+++++|+.+ .+..+|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~--~~~vdi~~~~~~~~~~~~-~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIA--FEEIDVEKDSAAREEVLK-VLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCe--EEEEeccCCHHHHHHHHH-HhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 48999999999999999999999998 67666654321 244565 78999999999988877 5666666665
No 107
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.56 E-value=3.2e-07 Score=63.89 Aligned_cols=68 Identities=22% Similarity=0.253 Sum_probs=57.2
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCC-CchhhhhhcCCCCCccEEeeCCeeecCcHHHHHH
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQN-RPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKF 160 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~-~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~y 160 (298)
+++|+.+.||+|++++.+|+.+|++ |+.+.++... ..+++.+ +++..++|++..+|..+.++..|.+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~i~--~~~~di~~~~~~~~~l~~-~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLGIE--FEEIDILEDGELREELKE-LSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCc--EEEEECCCCHHHHHHHHH-HhCCCCcCEEEECCEEEecHHHHHHh
Confidence 7899999999999999999999999 6766665432 3456665 88999999999999999999888764
No 108
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.54 E-value=2.9e-07 Score=66.65 Aligned_cols=61 Identities=8% Similarity=0.162 Sum_probs=47.6
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeec
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKG 152 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~ 152 (298)
+++||..++||+|.+++-+|+.+||+ |+.+.++-......... .++...||+++.+|..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~--~~~idi~~~~~~~~~~~-~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFD--FEMINVDRVPEAAETLR-AQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCc--eEEEECCCCHHHHHHHH-HcCCCCcCEEEECCEEEe
Confidence 68999999999999999999999999 78777764322222223 468889999998886544
No 109
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.49 E-value=3.6e-07 Score=63.93 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=51.2
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCC-CchhhhhhcCCCCCccEEeeCCeeecC
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQN-RPDWYMEKVHLANKVPSLEHNNEVKGE 153 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~-~~~~~~~~~nP~gkvP~L~~~g~~l~e 153 (298)
.+++|+..+||+|.+++.+|+++|++ |..+.++... ..+++.+ +||.+++|+|+++|..+.+
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~--~~~~~i~~~~~~~~~~~~-~~~~~~vP~i~~~~~~i~g 63 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIP--FEEVDVDEDPEALEELKK-LNGYRSVPVVVIGDEHLSG 63 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCC--eEEEeCCCCHHHHHHHHH-HcCCcccCEEEECCEEEec
Confidence 37899999999999999999999999 7777776532 2456776 8999999999998876655
No 110
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.42 E-value=2.5e-07 Score=72.85 Aligned_cols=64 Identities=14% Similarity=0.153 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhh-h-hccCCCCCCChHHHHHHHHHh
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLL-E-VKKNDITAGRPKLAAWIEEMN 271 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~-~-~~~~~~~~~~p~L~~w~~r~~ 271 (298)
..+.+.|+.|++.|. +++|++|+ +|.+|+.+++++..+..... . ..+ ....++|||.+|++||.
T Consensus 60 ~~~~~~l~aLs~~Lg---~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~-~~~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 60 EEVDQCCQALSQRLG---TQPYFFGDQPTELDALVFGHLFTILTTQLPNDELA-EKVKKYSNLLAFCRRIE 126 (126)
T ss_pred HHHHHHHHHHHHHHC---CCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHH-HHHHhCcHHHHHHHhcC
Confidence 667889999999998 68999999 99999999999877753211 0 111 12368999999999984
No 111
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.41 E-value=1.3e-06 Score=61.98 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=54.2
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCC-chhhhhhcC-CCCCccEEe-eCCeeecCcH--HHHHHHH
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNR-PDWYMEKVH-LANKVPSLE-HNNEVKGESL--DLMKFID 162 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~-~~~~~~~~n-P~gkvP~L~-~~g~~l~eS~--aI~~yL~ 162 (298)
+++||+..+||+|++++.+|+..|++ |+.+.++-... .+++.+ +| +...||+++ ++|.++.+.. .|..+|.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~--~~~idi~~~~~~~~~~~~-~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l~ 76 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAA--YEWVDIEEDEGAADRVVS-VNNGNMTVPTVKFADGSFLTNPSAAQVKAKLQ 76 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCc--eEEEeCcCCHhHHHHHHH-HhCCCceeCEEEECCCeEecCCCHHHHHHHhh
Confidence 47899999999999999999999999 67776654332 345555 76 889999997 6778877653 4555553
No 112
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.40 E-value=1.5e-06 Score=61.54 Aligned_cols=71 Identities=18% Similarity=0.249 Sum_probs=55.5
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCC-CchhhhhhcCCCC-CccEEeeCCeeecCcHHHHHHHH
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQN-RPDWYMEKVHLAN-KVPSLEHNNEVKGESLDLMKFID 162 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~-~~~~~~~~~nP~g-kvP~L~~~g~~l~eS~aI~~yL~ 162 (298)
+++||+.+.||+|.+++-+|+.+||+ |+.+.++... ..+++.+ ..... .||++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~--~~~i~i~~~~~~~~~~~~-~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVD--YEEIDVDGDPALREEMIN-RSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCc--EEEEECCCCHHHHHHHHH-HhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 37899999999999999999999999 7777776431 1233333 34444 89999999999999998887744
No 113
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.39 E-value=8.2e-07 Score=71.24 Aligned_cols=62 Identities=24% Similarity=0.309 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccC-CCCCCChHHHHHHHHHhc
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKN-DITAGRPKLAAWIEEMNK 272 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~-~~~~~~p~L~~w~~r~~~ 272 (298)
+.+.++++.+-+.+.. +++|+.|+ +|+||+++++++..+.... +. ++ .++|+|.+|++||++
T Consensus 82 ~~L~~a~~~w~~~~~~--~~~FlaGd~ptIADisvyg~l~s~e~~~----~~~Dl-~~~p~I~~W~eRm~~ 145 (149)
T cd03197 82 EWLYDALNTWVAALGK--DRQFHGGSKPNLADLAVYGVLRSVEGHP----AFKDM-VEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHhcC--CCCccCCCCCCHHHHHHHHHHHHHHHhc----cccch-hhCcCHHHHHHHHHH
Confidence 5556665555555543 67899999 9999999999998776432 34 54 489999999999986
No 114
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.34 E-value=1.9e-06 Score=64.52 Aligned_cols=58 Identities=31% Similarity=0.393 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHH
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEM 270 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~ 270 (298)
+.+.+.|+.+|+.|+ +++| + +|+|||++++.+.++.... .+.++..++|+|.+|+++|
T Consensus 40 ~~~~~~l~~le~~L~---~~~~---d~~TlADi~l~~~l~~~~~~~---~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 40 GKIERALDALEAELA---KLPL---DPLDLADIAVACALGYLDFRH---PDLDWRAAHPALAAWYARF 98 (98)
T ss_pred HHHHHHHHHHHHhhh---hCCC---CCCCHHHHHHHHHHHHHHhHc---cCcchhhhChHHHHHHHhC
Confidence 667889999999998 5788 6 9999999999998875321 1233346899999999986
No 115
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=4.9e-06 Score=60.07 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=54.9
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCC--CchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHH
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQN--RPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFID 162 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~--~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~ 162 (298)
++++|.-++||||.++.-+|+.+|++ |+.+.++... ...++..+.++..+||++..||..+.....+-++..
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~--~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~ 75 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVD--YEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEA 75 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCC--cEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHh
Confidence 57899999999999999999999999 6776666544 332333326688999999999988776655555443
No 116
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.28 E-value=4.7e-06 Score=60.78 Aligned_cols=75 Identities=13% Similarity=0.199 Sum_probs=59.7
Q ss_pred cEEEEecCCChhHHHHHHHHHH-----cCCCcceeEeecCCCC-CchhhhhhcCCC--CCccEEeeCCeeecCcHHHHHH
Q 022381 89 TTRLYISYTCPYAQRVWITRNC-----KGLQEKIKLVPIDLQN-RPDWYMEKVHLA--NKVPSLEHNNEVKGESLDLMKF 160 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~-----~gi~~~~~~~~v~~~~-~~~~~~~~~nP~--gkvP~L~~~g~~l~eS~aI~~y 160 (298)
.+++|+.++||+|.+++-+|+. .|++ |+.+.++... ..+++.. .... ..||.+..||+.+.+...|.++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~--~~~idi~~~~~~~~el~~-~~~~~~~~vP~ifi~g~~igg~~~~~~~ 78 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFD--YRYVDIHAEGISKADLEK-TVGKPVETVPQIFVDQKHIGGCTDFEAY 78 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCc--EEEEECCCChHHHHHHHH-HHCCCCCcCCEEEECCEEEcCHHHHHHH
Confidence 5899999999999999999999 8888 7777666432 1233443 3332 5899999999999999999999
Q ss_pred HHhhCC
Q 022381 161 IDSHFE 166 (298)
Q Consensus 161 L~~~~~ 166 (298)
+.+.++
T Consensus 79 ~~~~~~ 84 (85)
T PRK11200 79 VKENLG 84 (85)
T ss_pred HHHhcc
Confidence 998864
No 117
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.26 E-value=1.2e-06 Score=70.10 Aligned_cols=66 Identities=15% Similarity=0.237 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccC-CCCCCChHHHHHHHHHhc
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKN-DITAGRPKLAAWIEEMNK 272 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~-~~~~~~p~L~~w~~r~~~ 272 (298)
+++.+.++.||+.|+ +++|++|+ +|.+|+.+++++..+.......... ....++|+|.+|++||.+
T Consensus 67 ~~a~~~l~~l~~~L~---~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 67 RDAKECLNLLSQRLG---ESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILS 134 (137)
T ss_pred HHHHHHHHHHHHHHC---CCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHH
Confidence 667889999999998 68999999 9999999999887664211100000 113689999999999975
No 118
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.22 E-value=7.3e-06 Score=60.00 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=57.5
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCC---cceeEeecCCCC-CchhhhhhcCCC--CCccEEeeCCeeecCcHHHHHHHHh
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQ---EKIKLVPIDLQN-RPDWYMEKVHLA--NKVPSLEHNNEVKGESLDLMKFIDS 163 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~---~~~~~~~v~~~~-~~~~~~~~~nP~--gkvP~L~~~g~~l~eS~aI~~yL~~ 163 (298)
+++|+.++||||.+++-+|+.++++ +.|+.+.++... ..+++.+ .... ..||++..||..+.++..|.+++.+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~-~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~ 80 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEK-TVGKPVETVPQIFVDEKHVGGCTDFEQLVKE 80 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHH-HhCCCCCCcCeEEECCEEecCHHHHHHHHHh
Confidence 6899999999999999999998654 225665555322 1233444 3332 6899999999999999999999998
Q ss_pred hCC
Q 022381 164 HFE 166 (298)
Q Consensus 164 ~~~ 166 (298)
+++
T Consensus 81 ~~~ 83 (86)
T TIGR02183 81 NFD 83 (86)
T ss_pred ccc
Confidence 764
No 119
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.21 E-value=5.6e-06 Score=59.38 Aligned_cols=72 Identities=21% Similarity=0.250 Sum_probs=57.7
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCC-CchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhh
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQN-RPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSH 164 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~-~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~ 164 (298)
+++|+.+.||+|.+++-+|+.+|++ |+.+.++... ..+++.+ ......||++..+|..+.+...+.++-++.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~--~~~~di~~~~~~~~~~~~-~~g~~~vP~i~i~g~~igg~~~~~~~~~~g 73 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVT--FTEIRVDGDPALRDEMMQ-RSGRRTVPQIFIGDVHVGGCDDLYALDREG 73 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCC--cEEEEecCCHHHHHHHHH-HhCCCCcCEEEECCEEEcChHHHHHHHHcC
Confidence 5799999999999999999999999 6777766432 2234554 667889999999999999988888776653
No 120
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.16 E-value=1.4e-05 Score=57.41 Aligned_cols=72 Identities=22% Similarity=0.324 Sum_probs=59.6
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCc----hhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhh
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRP----DWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSH 164 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~----~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~ 164 (298)
+++|+.++||+|.+++-+|+..+++ |+.++++..... +.+.+ ++...++|++..+|..+.+...|.++..+.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~--~~~~~v~~~~~~~~~~~~~~~-~~g~~~~P~v~~~g~~igg~~~~~~~~~~g 77 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK--PAVVELDQHEDGSEIQDYLQE-LTGQRTVPNVFIGGKFIGGCDDLMALHKSG 77 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC--cEEEEEeCCCChHHHHHHHHH-HhCCCCCCeEEECCEEEcCHHHHHHHHHcC
Confidence 7899999999999999999999998 777777765432 23444 667789999999999999999999987753
No 121
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.16 E-value=4.8e-06 Score=58.75 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=43.4
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCc-hhhhhhcCCCCCccEEeeCCe
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRP-DWYMEKVHLANKVPSLEHNNE 149 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~-~~~~~~~nP~gkvP~L~~~g~ 149 (298)
++||+.+.||+|++++-+|+.+||+ |+.+.++-.... +++. ..+...||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~--~~~~di~~~~~~~~~~~--~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIA--FEEINIDEQPEAIDYVK--AQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCc--eEEEECCCCHHHHHHHH--HcCCcccCEEEECCC
Confidence 5799999999999999999999999 777777643322 3333 346678999998654
No 122
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.14 E-value=3.9e-06 Score=56.89 Aligned_cols=59 Identities=19% Similarity=0.275 Sum_probs=48.8
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC-CCchhhhhhcCCCCCccEEeeCCeee
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ-NRPDWYMEKVHLANKVPSLEHNNEVK 151 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~-~~~~~~~~~~nP~gkvP~L~~~g~~l 151 (298)
+++|+.+.||+|.+++-+|+.+|++ |+.+.++.. ...+++.+ .....++|++..||+.|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~--y~~~dv~~~~~~~~~l~~-~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIP--YEEVDVDEDEEAREELKE-LSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBE--EEEEEGGGSHHHHHHHHH-HHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCe--eeEcccccchhHHHHHHH-HcCCCccCEEEECCEEC
Confidence 5799999999999999999999999 788887765 23455555 66778999999998864
No 123
>PHA03050 glutaredoxin; Provisional
Probab=98.10 E-value=2.1e-05 Score=60.08 Aligned_cols=72 Identities=17% Similarity=0.383 Sum_probs=57.3
Q ss_pred CCcEEEEecCCChhHHHHHHHHHHcCCCc-ceeEeecCCCC-C---chhhhhhcCCCCCccEEeeCCeeecCcHHHHH
Q 022381 87 DGTTRLYISYTCPYAQRVWITRNCKGLQE-KIKLVPIDLQN-R---PDWYMEKVHLANKVPSLEHNNEVKGESLDLMK 159 (298)
Q Consensus 87 ~~~~~Ly~~~~sp~~~rvrl~L~~~gi~~-~~~~~~v~~~~-~---~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~ 159 (298)
..++++|..++||||.+++-+|+.+|+++ +|+.++++-.. . .+++.+ ++...+||.+..||+.+.....+..
T Consensus 12 ~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~-~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 12 NNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQ-ITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred cCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHH-HcCCCCcCEEEECCEEEeChHHHHH
Confidence 35699999999999999999999999942 27777777422 2 245555 7778899999999999988877766
No 124
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.10 E-value=2.8e-05 Score=58.53 Aligned_cols=73 Identities=12% Similarity=0.115 Sum_probs=58.0
Q ss_pred CCcEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCC-c---hhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHH
Q 022381 87 DGTTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNR-P---DWYMEKVHLANKVPSLEHNNEVKGESLDLMKFID 162 (298)
Q Consensus 87 ~~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~-~---~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~ 162 (298)
...+++|.-++||||.+++-+|+..|++ |+.++++.... . +.+.. ++...+||.+..+|..+.....+.....
T Consensus 7 ~~~Vvvysk~~Cp~C~~ak~~L~~~~i~--~~~vdid~~~~~~~~~~~l~~-~tg~~tvP~Vfi~g~~iGG~ddl~~l~~ 83 (99)
T TIGR02189 7 EKAVVIFSRSSCCMCHVVKRLLLTLGVN--PAVHEIDKEPAGKDIENALSR-LGCSPAVPAVFVGGKLVGGLENVMALHI 83 (99)
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHcCCC--CEEEEcCCCccHHHHHHHHHH-hcCCCCcCeEEECCEEEcCHHHHHHHHH
Confidence 3569999999999999999999999999 67787775432 1 22443 6678899999999999998887776533
No 125
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.94 E-value=7e-05 Score=53.95 Aligned_cols=73 Identities=18% Similarity=0.296 Sum_probs=57.7
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCch----hhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHh
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPD----WYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDS 163 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~----~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~ 163 (298)
+++|+.++||+|.+++-+|+..+++..++.+.++.....+ .+.+ ......+|.+..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~-~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEE-ITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHH-HhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4689999999999999999999988446677776543322 2343 56677899999999999999988887765
No 126
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.86 E-value=8.9e-05 Score=55.54 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=55.1
Q ss_pred CCcEEEEec-----CCChhHHHHHHHHHHcCCCcceeEeecCCCC-CchhhhhhcCCCCCccEEeeCCeeecCcHHHHHH
Q 022381 87 DGTTRLYIS-----YTCPYAQRVWITRNCKGLQEKIKLVPIDLQN-RPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKF 160 (298)
Q Consensus 87 ~~~~~Ly~~-----~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~-~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~y 160 (298)
...+.+|.- +.||||.+++-+|+.+||+ |+.+.++-.. ..+++.+ ++...+||.+..||..+.....+.+.
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~--~~~~di~~~~~~~~~l~~-~tg~~tvP~vfi~g~~iGG~ddl~~l 87 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVP--FAYVNVLEDPEIRQGIKE-YSNWPTIPQLYVKGEFVGGCDIIMEM 87 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCC--EEEEECCCCHHHHHHHHH-HhCCCCCCEEEECCEEEeChHHHHHH
Confidence 346888865 7899999999999999999 6766664221 1233444 67778999999999999888877765
Q ss_pred HH
Q 022381 161 ID 162 (298)
Q Consensus 161 L~ 162 (298)
..
T Consensus 88 ~~ 89 (97)
T TIGR00365 88 YQ 89 (97)
T ss_pred HH
Confidence 44
No 127
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.71 E-value=0.00021 Score=52.64 Aligned_cols=72 Identities=17% Similarity=0.167 Sum_probs=55.2
Q ss_pred CcEEEEec-----CCChhHHHHHHHHHHcCCCcceeEeecCCCCC-chhhhhhcCCCCCccEEeeCCeeecCcHHHHHHH
Q 022381 88 GTTRLYIS-----YTCPYAQRVWITRNCKGLQEKIKLVPIDLQNR-PDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFI 161 (298)
Q Consensus 88 ~~~~Ly~~-----~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~-~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL 161 (298)
..+.+|.. +.||||.+++-+|+..|++ |+.+.++.... .+++.+ .+...++|.+..||..+.+...+.+..
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~--y~~idv~~~~~~~~~l~~-~~g~~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVD--FGTFDILEDEEVRQGLKE-YSNWPTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCC--eEEEEcCCCHHHHHHHHH-HhCCCCCCEEEECCEEEeCHHHHHHHH
Confidence 45777765 5899999999999999999 77777653321 233444 667789999999999999988887754
Q ss_pred H
Q 022381 162 D 162 (298)
Q Consensus 162 ~ 162 (298)
.
T Consensus 85 ~ 85 (90)
T cd03028 85 E 85 (90)
T ss_pred H
Confidence 3
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=97.69 E-value=0.0002 Score=50.49 Aligned_cols=57 Identities=18% Similarity=0.319 Sum_probs=47.4
Q ss_pred CChhHHHHHHHHHHcCCCcc-eeEeecCCCCCchhhhhhcCCCCCccEEee-CCeeecCcHHHHHHH
Q 022381 97 TCPYAQRVWITRNCKGLQEK-IKLVPIDLQNRPDWYMEKVHLANKVPSLEH-NNEVKGESLDLMKFI 161 (298)
Q Consensus 97 ~sp~~~rvrl~L~~~gi~~~-~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~-~g~~l~eS~aI~~yL 161 (298)
-+|-|..+.++|+..+.+.. ++++..+- ++ ++|.|++|+|.+ +++.+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n----~~----~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN----PW----LSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCC----CC----cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 47899999999999999954 55554331 21 789999999998 999999999999998
No 129
>PRK10824 glutaredoxin-4; Provisional
Probab=97.11 E-value=0.0028 Score=48.89 Aligned_cols=72 Identities=14% Similarity=0.123 Sum_probs=54.2
Q ss_pred CcEEEEec-----CCChhHHHHHHHHHHcCCCcceeEeecCCCC-CchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHH
Q 022381 88 GTTRLYIS-----YTCPYAQRVWITRNCKGLQEKIKLVPIDLQN-RPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFI 161 (298)
Q Consensus 88 ~~~~Ly~~-----~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~-~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL 161 (298)
..+.+|.- +.||||.++.-+|...|++ |+.++++... -.+.+.+ .+...+||-+..+|+.|.....+....
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~--~~~idi~~d~~~~~~l~~-~sg~~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGER--FAYVDILQNPDIRAELPK-YANWPTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCC--ceEEEecCCHHHHHHHHH-HhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 34666655 4899999999999999999 5666655321 1234555 777889999999999999988877754
Q ss_pred H
Q 022381 162 D 162 (298)
Q Consensus 162 ~ 162 (298)
.
T Consensus 92 ~ 92 (115)
T PRK10824 92 Q 92 (115)
T ss_pred H
Confidence 4
No 130
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.05 E-value=0.0045 Score=48.46 Aligned_cols=63 Identities=19% Similarity=0.273 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCCCCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCccc
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGHFSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEAF 276 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~~ 276 (298)
.++...|+.++..+. ......|.+|+-||.+|++|..+..+. |..+. |++.+|+++|.+.-.+
T Consensus 63 ~~l~~~L~~l~~ll~---~~~~~n~~ls~DDi~lFp~LR~Lt~vk----gi~~P---~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 63 AALNALLEELDPLIL---SSEAVNGQLSTDDIILFPILRNLTLVK----GLVFP---PKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHc---CccccCCcCCHHHHHHHHHHhhhhhhc----CCCCC---HHHHHHHHHHHHHhCC
Confidence 778888999999986 233444459999999999998887543 55554 8999999999876543
No 131
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.05 E-value=0.003 Score=50.93 Aligned_cols=71 Identities=11% Similarity=0.114 Sum_probs=54.1
Q ss_pred cEEEEecC------CChhHHHHHHHHHHcCCCcceeEeecCCCC-CchhhhhhcCC----CCCccEEeeCCeeecCcHHH
Q 022381 89 TTRLYISY------TCPYAQRVWITRNCKGLQEKIKLVPIDLQN-RPDWYMEKVHL----ANKVPSLEHNNEVKGESLDL 157 (298)
Q Consensus 89 ~~~Ly~~~------~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~-~~~~~~~~~nP----~gkvP~L~~~g~~l~eS~aI 157 (298)
++.||... .+|+|.+++-+|+.+||+ |+.+.++... ..+++.+ +.. ..+||.+..+|..|.....+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~--~~e~DVs~~~~~~~EL~~-~~g~~~~~~tvPqVFI~G~~IGG~del 77 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVK--FDERDVSMDSGFREELRE-LLGAELKAVSLPRVFVDGRYLGGAEEV 77 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCc--EEEEECCCCHHHHHHHHH-HhCCCCCCCCCCEEEECCEEEecHHHH
Confidence 36889998 899999999999999999 6777776532 1234444 433 37899999999999988877
Q ss_pred HHHHH
Q 022381 158 MKFID 162 (298)
Q Consensus 158 ~~yL~ 162 (298)
.+.-+
T Consensus 78 ~~L~e 82 (147)
T cd03031 78 LRLNE 82 (147)
T ss_pred HHHHH
Confidence 76433
No 132
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.95 E-value=0.0032 Score=59.50 Aligned_cols=69 Identities=16% Similarity=0.262 Sum_probs=52.6
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhc--------CCCCCccEEeeCCeeecCcHHHHH
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKV--------HLANKVPSLEHNNEVKGESLDLMK 159 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~--------nP~gkvP~L~~~g~~l~eS~aI~~ 159 (298)
++++|..+.||+|.++.-+|+.+||+ |+.+.++-.....++.+.+ ....+||.+..||..+.+-..+..
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~gi~--~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGANDIP--FTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCC--eEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 58999999999999999999999999 7788777322211221112 356789999999998888777655
No 133
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=96.78 E-value=0.0038 Score=49.27 Aligned_cols=62 Identities=26% Similarity=0.370 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccCCCCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCcc
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLGHFSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNEA 275 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G~~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p~ 275 (298)
.++...|+.||..|. ......|.+|+-||.+|+.|..+..+. |..+. |++.+|+++|.+.-.
T Consensus 62 ~~l~~~L~~Le~ll~---~~~~~n~~LS~dDi~lFp~LR~Ltivk----gi~~P---~~V~~Y~~~~s~~t~ 123 (132)
T PF04399_consen 62 AELNADLEELEPLLA---SPNAVNGELSIDDIILFPILRSLTIVK----GIQWP---PKVRAYMDRMSKATG 123 (132)
T ss_dssp HHHHHHHHHHHHH-S---CTTBTTSS--HHHHHHHHHHHHHCTCT----TS------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc---cccccCCCCCHHHHHHHHHHhhhhhcc----CCcCC---HHHHHHHHHHHHHcC
Confidence 677888888888887 345555569999999999998887543 55555 999999999987544
No 134
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.015 Score=44.03 Aligned_cols=74 Identities=20% Similarity=0.302 Sum_probs=58.0
Q ss_pred CCcEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhh---hcCCCCCccEEeeCCeeecCcHHHHHHHH
Q 022381 87 DGTTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYME---KVHLANKVPSLEHNNEVKGESLDLMKFID 162 (298)
Q Consensus 87 ~~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~---~~nP~gkvP~L~~~g~~l~eS~aI~~yL~ 162 (298)
...+..|.-..||||.++.-+|...|++ +.++++|......++.+ ++.-..+||.+..+|+.+.....+..+-.
T Consensus 13 ~~~VVifSKs~C~~c~~~k~ll~~~~v~--~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 13 ENPVVIFSKSSCPYCHRAKELLSDLGVN--PKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred cCCEEEEECCcCchHHHHHHHHHhCCCC--CEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 3457888889999999999999999999 78888887644333222 25556799999999999999888877644
No 135
>PTZ00062 glutaredoxin; Provisional
Probab=96.33 E-value=0.021 Score=48.63 Aligned_cols=71 Identities=15% Similarity=0.099 Sum_probs=53.2
Q ss_pred CcEEEEec-----CCChhHHHHHHHHHHcCCCcceeEeecCCCC-CchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHH
Q 022381 88 GTTRLYIS-----YTCPYAQRVWITRNCKGLQEKIKLVPIDLQN-RPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFI 161 (298)
Q Consensus 88 ~~~~Ly~~-----~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~-~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL 161 (298)
..+.||.- +.||||+++.-+|+..||+ |+.+.++-.. ..+.+.+ .+...+||.+..+|+.|.....+.+..
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~--y~~~DI~~d~~~~~~l~~-~sg~~TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVK--YETYNIFEDPDLREELKV-YSNWPTYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCC--EEEEEcCCCHHHHHHHHH-HhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 34677744 5899999999999999999 6666665322 1234444 677789999999999998887777643
No 136
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.31 E-value=0.015 Score=39.80 Aligned_cols=62 Identities=24% Similarity=0.304 Sum_probs=40.9
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCc-ceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeec
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQE-KIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKG 152 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~-~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~ 152 (298)
++++|+.++||+|.++.-+|++....+ .+++..+|..+.++ +.+ ......+|++..+|+.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~-l~~-~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD-LAD-EYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh-HHH-HcCCcccCEEEECCEEEE
Confidence 478999999999999988888652221 14444445443333 333 334457999998887665
No 137
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.04 E-value=0.032 Score=40.04 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=43.8
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCC
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNN 148 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g 148 (298)
+++||+-+.|+.|..+.-.|+.......+++..+|....++++.+ .. -.||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l~~~-Y~--~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPELFEK-YG--YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHHHHH-SC--TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH-hc--CCCCEEEEcC
Confidence 478999999999999999999877665577777777766676654 43 4799999777
No 138
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=95.80 E-value=0.015 Score=45.92 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=29.1
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecC
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPID 123 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~ 123 (298)
|+++|+.+.||+|++++-+|+.+||+ |+.+.+.
T Consensus 1 mi~iY~~~~C~~C~ka~~~L~~~gi~--~~~idi~ 33 (131)
T PRK01655 1 MVTLFTSPSCTSCRKAKAWLEEHDIP--FTERNIF 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCC--cEEeecc
Confidence 48999999999999999999999999 6666553
No 139
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=95.73 E-value=0.019 Score=44.26 Aligned_cols=33 Identities=12% Similarity=0.122 Sum_probs=29.4
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecC
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPID 123 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~ 123 (298)
|+++|+.+.|++|++++-.|+.+||+ |+++.+.
T Consensus 1 mi~iY~~~~C~~c~ka~~~L~~~gi~--~~~idi~ 33 (115)
T cd03032 1 MIKLYTSPSCSSCRKAKQWLEEHQIP--FEERNLF 33 (115)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCc--eEEEecC
Confidence 48999999999999999999999999 7777654
No 140
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=95.65 E-value=0.016 Score=44.32 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=28.4
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecC
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPID 123 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~ 123 (298)
++||+.+.||+|++++-+|+.+|++ |+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~--~~~idi~ 32 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVD--YTAIDIV 32 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCc--eEEeccc
Confidence 5899999999999999999999999 6776654
No 141
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=95.41 E-value=0.023 Score=42.95 Aligned_cols=32 Identities=9% Similarity=0.227 Sum_probs=28.4
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecC
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPID 123 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~ 123 (298)
+++|+.+.||+|++++-+|+.+||+ |+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~--~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIE--YEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCC--cEEEeec
Confidence 5799999999999999999999999 6776654
No 142
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=95.10 E-value=0.015 Score=55.35 Aligned_cols=106 Identities=19% Similarity=0.273 Sum_probs=73.1
Q ss_pred eCCeeecCcHHHHHHHHhhCC-CCCCCCCCHHhHHHHHHHHHHHhHhHHHHHhhccCChHHHHHHHHHHHHHHhccCCCC
Q 022381 146 HNNEVKGESLDLMKFIDSHFE-GPSLFPDDPAKREFAEELFSYTDTFNKTVRSSLQGDGNEASAAFDYLETALSKFNDGP 224 (298)
Q Consensus 146 ~~g~~l~eS~aI~~yL~~~~~-~~~L~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~~~~~ 224 (298)
-+|..+.+...+..|....-. .+.||+.+ .++.+++.|..+.... ..+++...+..++..|. -..
T Consensus 43 ~d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~~----------~~~~~s~~~~~ld~~l~---~~t 108 (712)
T KOG1147|consen 43 LDGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSSTF----------SFDEISSSLSELDKFLV---LRT 108 (712)
T ss_pred cccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhhc----------chHHHHHHHHHHHhhhh---HHH
Confidence 346667777777777664322 34588876 7899999998886541 11567778888888888 488
Q ss_pred cccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHH
Q 022381 225 FLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIE 268 (298)
Q Consensus 225 fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~ 268 (298)
||+|. +|+||+++|..+..-...... ....+.+-++.+|++
T Consensus 109 ~lvg~sls~Ad~aiw~~l~~n~~~~~~---lk~~k~~~~v~Rw~~ 150 (712)
T KOG1147|consen 109 FLVGNSLSIADFAIWGALHSNGMRQEQ---LKAKKDYQNVERWYD 150 (712)
T ss_pred HhhccchhHHHHHHHHHHhcccchHHH---HHhhCCchhhhhhcC
Confidence 99999 999999999988642111111 111245678888887
No 143
>PRK12559 transcriptional regulator Spx; Provisional
Probab=95.00 E-value=0.042 Score=43.39 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=29.2
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecC
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPID 123 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~ 123 (298)
|+++|+.+.|+.|++++-+|+.+||+ |+.+.+.
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~--~~~~di~ 33 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQID--YTEKNIV 33 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCC--eEEEEee
Confidence 58999999999999999999999999 6666554
No 144
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=94.96 E-value=0.045 Score=43.32 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=29.4
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecC
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPID 123 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~ 123 (298)
|+++|+.+.|+.|++++-.|+.+||+ |+.+.+.
T Consensus 1 Mi~iY~~~~C~~crkA~~~L~~~~i~--~~~~d~~ 33 (132)
T PRK13344 1 MIKIYTISSCTSCKKAKTWLNAHQLS--YKEQNLG 33 (132)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHcCCC--eEEEECC
Confidence 48999999999999999999999999 6776654
No 145
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=94.69 E-value=0.049 Score=42.03 Aligned_cols=32 Identities=16% Similarity=0.358 Sum_probs=28.3
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecC
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPID 123 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~ 123 (298)
++||+.+.||+|++++-+|+.+||+ |+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~--~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIE--YQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCc--eEEEecC
Confidence 4799999999999999999999999 6776654
No 146
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=94.16 E-value=0.089 Score=40.69 Aligned_cols=29 Identities=10% Similarity=0.164 Sum_probs=26.6
Q ss_pred CcEEEEecCCChhHHHHHHHHHHcCCCcc
Q 022381 88 GTTRLYISYTCPYAQRVWITRNCKGLQEK 116 (298)
Q Consensus 88 ~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~ 116 (298)
+++++|+++.|.-|++++-.|+..||+|+
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~~~ 29 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIEYT 29 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCCcE
Confidence 36999999999999999999999999943
No 147
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=94.05 E-value=0.084 Score=39.99 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=28.1
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeecC
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPID 123 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~ 123 (298)
+++|+.+.|+.|++++-.|+.+|++ |+++.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~--~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVA--YTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCC--eEEEecc
Confidence 5799999999999999999999999 6666543
No 148
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=93.78 E-value=0.11 Score=40.00 Aligned_cols=31 Identities=13% Similarity=0.205 Sum_probs=27.8
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeec
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPI 122 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v 122 (298)
++||+.+.|+.|++++-+|+.+|++ |+++.+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~--~~~~d~ 32 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHE--VEVRDL 32 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCC--cEEeeh
Confidence 7899999999999999999999999 666544
No 149
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=93.21 E-value=0.38 Score=33.83 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=39.4
Q ss_pred cEEEEecCCChhHHHHHHHHHH----cCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCe
Q 022381 89 TTRLYISYTCPYAQRVWITRNC----KGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNE 149 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~----~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~ 149 (298)
++++|+.++||+|..+.-.++. .+.. +.+..+|....++.. + ......+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~--~~~~~vd~~~~~~~~-~-~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA--VEVEYINVMENPQKA-M-EYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc--eEEEEEeCccCHHHH-H-HcCCccCCEEEECCE
Confidence 4789999999999988777653 3433 666777765544433 2 344557999998775
No 150
>PRK10853 putative reductase; Provisional
Probab=92.99 E-value=0.16 Score=39.36 Aligned_cols=32 Identities=13% Similarity=0.206 Sum_probs=28.2
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeec
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPI 122 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v 122 (298)
|+++|+++.|.-|++++-.|+.+|++ ++++.+
T Consensus 1 Mi~iy~~~~C~t~rkA~~~L~~~~i~--~~~~d~ 32 (118)
T PRK10853 1 MVTLYGIKNCDTIKKARRWLEAQGID--YRFHDY 32 (118)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHcCCC--cEEeeh
Confidence 48999999999999999999999999 666543
No 151
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=0.38 Score=33.69 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=43.6
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCC-----------CCchhhhh-hcCCCCCccEEe-eCCeeec
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ-----------NRPDWYME-KVHLANKVPSLE-HNNEVKG 152 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~-----------~~~~~~~~-~~nP~gkvP~L~-~~g~~l~ 152 (298)
+.+||+...||-|-...-.|+-.+++ |+.|++.-. +..++|-+ |.|..--+|+|. +||+++.
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~v~--yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLNVD--YDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcCCC--ceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 45899999999999999999999998 777777531 22333433 234444689998 6666554
No 152
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=92.86 E-value=0.64 Score=32.74 Aligned_cols=56 Identities=11% Similarity=0.088 Sum_probs=39.0
Q ss_pred cEEEEecCCChhHHHH----HHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeec
Q 022381 89 TTRLYISYTCPYAQRV----WITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKG 152 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rv----rl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~ 152 (298)
.+.+|. ++||.|..+ .-++++.|++ ++++.++- .++.. ..-...+|++..||+.+.
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~--~~~~~v~~---~~~a~--~~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGID--AEFEKVTD---MNEIL--EAGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCC--eEEEEeCC---HHHHH--HcCCCcCCEEEECCEEEE
Confidence 356776 899999987 5677778887 77777762 22222 234567999998887653
No 153
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.84 E-value=0.39 Score=35.68 Aligned_cols=65 Identities=15% Similarity=0.112 Sum_probs=47.4
Q ss_pred CCChhHHHHHHHHHHcC-CCcceeEeecCCC-CCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHh
Q 022381 96 YTCPYAQRVWITRNCKG-LQEKIKLVPIDLQ-NRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDS 163 (298)
Q Consensus 96 ~~sp~~~rvrl~L~~~g-i~~~~~~~~v~~~-~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~ 163 (298)
|.|+|+.++-=+|...| ++ |..+.|=.. +-.+.+++ .+-..++|=|..+|+.+..|..|.+...+
T Consensus 28 P~CGFS~~~vqiL~~~g~v~--~~~vnVL~d~eiR~~lk~-~s~WPT~PQLyi~GEfvGG~DIv~Em~q~ 94 (105)
T COG0278 28 PQCGFSAQAVQILSACGVVD--FAYVDVLQDPEIRQGLKE-YSNWPTFPQLYVNGEFVGGCDIVREMYQS 94 (105)
T ss_pred CCCCccHHHHHHHHHcCCcc--eeEEeeccCHHHHhccHh-hcCCCCCceeeECCEEeccHHHHHHHHHc
Confidence 67999999999999999 55 555544221 11223343 66778999999999999999888776553
No 154
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=92.73 E-value=0.23 Score=36.34 Aligned_cols=62 Identities=23% Similarity=0.158 Sum_probs=40.3
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCc-ceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeec
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQE-KIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKG 152 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~-~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~ 152 (298)
.+.+|..++||+|..+.-+++..--.+ .+++..+|....++... ...-..+|.++.||+.+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~--~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVE--ERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHH--HcCCccCCEEEECCEEEE
Confidence 588999999999998877666653222 24455555444444333 334456999998887654
No 155
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=92.40 E-value=0.33 Score=31.12 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=34.7
Q ss_pred EEEEecCCChhHHHHHHHHH-----HcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEee
Q 022381 90 TRLYISYTCPYAQRVWITRN-----CKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEH 146 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~-----~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~ 146 (298)
+.+|+...|++|++++..+. ..++. +..+.++.......... .++.+.+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVK--FEAVDVDEDPALEKELK-RYGVGGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcE--EEEEEcCCChHHhhHHH-hCCCccccEEEE
Confidence 35788889999999988888 34444 44444443322221123 567889999983
No 156
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=92.19 E-value=0.24 Score=38.80 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=28.3
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeec
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPI 122 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v 122 (298)
.++||+++.|.-|++++-.|+++||+ |+++.+
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~--~~~~d~ 33 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHD--VEVQDI 33 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCC--cEEEec
Confidence 58999999999999999999999999 566543
No 157
>PRK10026 arsenate reductase; Provisional
Probab=91.96 E-value=0.26 Score=39.39 Aligned_cols=32 Identities=9% Similarity=0.191 Sum_probs=28.2
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeec
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPI 122 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v 122 (298)
++++|+++.|.-|++++-.|+.+|++ |+++.+
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL~~~gi~--~~~~d~ 34 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMIRNSGTE--PTIIHY 34 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHCCCC--cEEEee
Confidence 68999999999999999999999999 555543
No 158
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=90.81 E-value=1 Score=33.17 Aligned_cols=67 Identities=18% Similarity=0.253 Sum_probs=48.1
Q ss_pred EEEEecCCCh------hHHHHHHHHHHcCCCcceeEeecCCCC-CchhhhhhcC----CCCCccEEeeCCeeecCcHHHH
Q 022381 90 TRLYISYTCP------YAQRVWITRNCKGLQEKIKLVPIDLQN-RPDWYMEKVH----LANKVPSLEHNNEVKGESLDLM 158 (298)
Q Consensus 90 ~~Ly~~~~sp------~~~rvrl~L~~~gi~~~~~~~~v~~~~-~~~~~~~~~n----P~gkvP~L~~~g~~l~eS~aI~ 158 (298)
+++|+...+. .|++|+.+|+-+||+ |+.+.++... ..+|+.+ .. +...||-+..||..+.+...+.
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~--f~eiDI~~d~~~r~em~~-~~~~~~g~~tvPQIFi~~~~iGg~ddl~ 78 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIE--FEEVDISMNEENRQWMRE-NVPNENGKPLPPQIFNGDEYCGDYEAFF 78 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCc--eEEEecCCCHHHHHHHHH-hcCCCCCCCCCCEEEECCEEeeCHHHHH
Confidence 5677765433 457889999999999 7888776532 2345554 43 3478999999999999887665
Q ss_pred H
Q 022381 159 K 159 (298)
Q Consensus 159 ~ 159 (298)
+
T Consensus 79 ~ 79 (92)
T cd03030 79 E 79 (92)
T ss_pred H
Confidence 5
No 159
>PHA02125 thioredoxin-like protein
Probab=90.36 E-value=0.86 Score=31.89 Aligned_cols=52 Identities=15% Similarity=0.202 Sum_probs=36.3
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEee
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEH 146 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~ 146 (298)
|+.+|+.++|+.|+++.-.|+ +++ ++++.+|.+...+ +.+ ...-..+|++.+
T Consensus 1 ~iv~f~a~wC~~Ck~~~~~l~--~~~--~~~~~vd~~~~~~-l~~-~~~v~~~PT~~~ 52 (75)
T PHA02125 1 MIYLFGAEWCANCKMVKPMLA--NVE--YTYVDVDTDEGVE-LTA-KHHIRSLPTLVN 52 (75)
T ss_pred CEEEEECCCCHhHHHHHHHHH--HHh--heEEeeeCCCCHH-HHH-HcCCceeCeEEC
Confidence 478899999999999877776 455 5666677544333 333 444567999983
No 160
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=90.27 E-value=0.46 Score=36.30 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=27.2
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeec
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPI 122 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v 122 (298)
+++|+.+.|.-|++++-.|+..|++ |+++.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~--~~~~di 31 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIE--PEIVEY 31 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCC--eEEEec
Confidence 5899999999999999999999999 666543
No 161
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=90.26 E-value=0.46 Score=36.44 Aligned_cols=31 Identities=16% Similarity=0.303 Sum_probs=27.3
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCcceeEeec
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQEKIKLVPI 122 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v 122 (298)
+++|+.+.|+-|++++-.|+..|++ ++++.+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~--~~~~di 31 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIE--PEVVKY 31 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCC--eEEEec
Confidence 5799999999999999999999999 666544
No 162
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=88.69 E-value=1.4 Score=33.47 Aligned_cols=70 Identities=10% Similarity=0.221 Sum_probs=45.4
Q ss_pred CChhHHHHHHHHHHc-CCCcceeEeecCCCCCchhhhhhcCC-CCCccEEe-eCC-------------eeecCcHHHHHH
Q 022381 97 TCPYAQRVWITRNCK-GLQEKIKLVPIDLQNRPDWYMEKVHL-ANKVPSLE-HNN-------------EVKGESLDLMKF 160 (298)
Q Consensus 97 ~sp~~~rvrl~L~~~-gi~~~~~~~~v~~~~~~~~~~~~~nP-~gkvP~L~-~~g-------------~~l~eS~aI~~y 160 (298)
.||.|..+.=+|... .+....++..|++..-.....+-+.. ...+|+|+ .+| ..|.|...|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 588888887666642 23334566667775433333221222 45689998 333 278999999999
Q ss_pred HHhhCC
Q 022381 161 IDSHFE 166 (298)
Q Consensus 161 L~~~~~ 166 (298)
|.++|+
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999987
No 163
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=84.28 E-value=2.3 Score=29.76 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=36.2
Q ss_pred cEEEEecCCChhHHHHHH----HHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCc
Q 022381 89 TTRLYISYTCPYAQRVWI----TRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGES 154 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl----~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS 154 (298)
++++ ..+.||+|.++.- ++...|+. ++.+.+ .+ .+.. . ...-..+|+|+.||+..+..
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~--~ei~~~--~~-~~~~-~-~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIE--VEIIDI--ED-FEEI-E-KYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEE--EEEEET--TT-HHHH-H-HTT-SSSSEEEETTEEEEES
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCe--EEEEEc--cC-HHHH-H-HcCCCCCCEEEECCEEEEEe
Confidence 4667 4556999986644 45556766 666654 22 3333 2 35567899999998875544
No 164
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=83.94 E-value=3 Score=34.37 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccC-C-CCHHHHHHHHHHHHHh
Q 022381 204 NEASAAFDYLETALSKFNDGPFLLG-H-FSIADIAYAPFIERYQ 245 (298)
Q Consensus 204 ~~~~~~L~~le~~L~~~~~~~fl~G-~-~T~ADi~l~~~l~~~~ 245 (298)
....+.++.|++.|+......|++| + +|-+||.+++.|.-+.
T Consensus 111 ~~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l 154 (168)
T PF11801_consen 111 KLAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLL 154 (168)
T ss_pred HHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 3456788889999984111278888 4 9999999999886553
No 165
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=77.25 E-value=11 Score=28.17 Aligned_cols=72 Identities=21% Similarity=0.299 Sum_probs=41.4
Q ss_pred cEEEEecCCChh------HHHHHHHHHHcCCCcceeEeecCCCC-Cchhhhhhc--------CCCCCccEEeeCCeeecC
Q 022381 89 TTRLYISYTCPY------AQRVWITRNCKGLQEKIKLVPIDLQN-RPDWYMEKV--------HLANKVPSLEHNNEVKGE 153 (298)
Q Consensus 89 ~~~Ly~~~~sp~------~~rvrl~L~~~gi~~~~~~~~v~~~~-~~~~~~~~~--------nP~gkvP~L~~~g~~l~e 153 (298)
.+++|....+.. .+++...|+.++|+ |+.+.+.... ...+.+++. ++....|-+..||..+++
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~--fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gd 79 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIP--FEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGD 79 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT----EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCC--cEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEee
Confidence 467888765443 46899999999999 7877666532 223444312 222334688889988887
Q ss_pred cHHHHHHHH
Q 022381 154 SLDLMKFID 162 (298)
Q Consensus 154 S~aI~~yL~ 162 (298)
-..+-+.-+
T Consensus 80 ye~f~ea~E 88 (99)
T PF04908_consen 80 YEDFEEANE 88 (99)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 666655433
No 166
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=74.27 E-value=4.6 Score=30.51 Aligned_cols=28 Identities=11% Similarity=0.262 Sum_probs=21.2
Q ss_pred EecCCChhHHHHHHHHHHcCCCcceeEeec
Q 022381 93 YISYTCPYAQRVWITRNCKGLQEKIKLVPI 122 (298)
Q Consensus 93 y~~~~sp~~~rvrl~L~~~gi~~~~~~~~v 122 (298)
|+.+.|.-|++++-.|+..|++ |+++.+
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~--~~~~d~ 28 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIE--YEFIDY 28 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT----EEEEET
T ss_pred CcCCCCHHHHHHHHHHHHcCCC--eEeehh
Confidence 8889999999999999999999 677654
No 167
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.51 E-value=9.3 Score=32.83 Aligned_cols=65 Identities=11% Similarity=0.068 Sum_probs=48.6
Q ss_pred CCChhHHHHHHHHHHcCCCcceeEeecCCCC-CchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHh
Q 022381 96 YTCPYAQRVWITRNCKGLQEKIKLVPIDLQN-RPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDS 163 (298)
Q Consensus 96 ~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~-~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~ 163 (298)
+.|+|++++.-.|+..|++ |+...|--++ -...+++ .+-..+.|=|-.+|.-+.+...|.+.+.+
T Consensus 152 P~CGFS~~~v~iL~~~nV~--~~~fdIL~DeelRqglK~-fSdWPTfPQlyI~GEFiGGlDIl~~m~~~ 217 (227)
T KOG0911|consen 152 PKCGFSRQLVGILQSHNVN--YTIFDVLTDEELRQGLKE-FSDWPTFPQLYVKGEFIGGLDILKEMHEK 217 (227)
T ss_pred ccccccHHHHHHHHHcCCC--eeEEeccCCHHHHHHhhh-hcCCCCccceeECCEeccCcHHHHHHhhc
Confidence 6799999999999999999 6666553221 1223444 77788999999999999988777665543
No 168
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=72.47 E-value=19 Score=25.85 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=43.8
Q ss_pred cEEEEecCCChhHHHHHHHHH-----HcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCeee------cCcH
Q 022381 89 TTRLYISYTCPYAQRVWITRN-----CKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEVK------GESL 155 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~-----~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~l------~eS~ 155 (298)
.+..|+.++|+.|+...=.++ +.+ + +.+..+|....++ +.+ ..--..+|.+. .+|..+ .+..
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~--v~~~~vd~~~~~~-l~~-~~~v~~~Pt~~~~~~g~~~~~~~g~~~~~ 94 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKD-N--VKFAKVDCDENKE-LCK-KYGVKSVPTIIFFKNGKEVKRYNGPRNAE 94 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTT-T--SEEEEEETTTSHH-HHH-HTTCSSSSEEEEEETTEEEEEEESSSSHH
T ss_pred EEEEEeCCCCCccccccceeccccccccc-c--cccchhhhhccch-hhh-ccCCCCCCEEEEEECCcEEEEEECCCCHH
Confidence 466778889999998764433 333 3 7777777765443 333 34467799998 566543 2345
Q ss_pred HHHHHHHh
Q 022381 156 DLMKFIDS 163 (298)
Q Consensus 156 aI~~yL~~ 163 (298)
.|.++|++
T Consensus 95 ~l~~~i~~ 102 (103)
T PF00085_consen 95 SLIEFIEK 102 (103)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 66666654
No 169
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=72.24 E-value=11 Score=29.17 Aligned_cols=59 Identities=14% Similarity=0.143 Sum_probs=32.3
Q ss_pred EEEEecCCChhHHHHHHHHHH----cCCCcceeEeecCCCC---Cc-----hhhhhhc---CCCCCccEEe--eCCee
Q 022381 90 TRLYISYTCPYAQRVWITRNC----KGLQEKIKLVPIDLQN---RP-----DWYMEKV---HLANKVPSLE--HNNEV 150 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~----~gi~~~~~~~~v~~~~---~~-----~~~~~~~---nP~gkvP~L~--~~g~~ 150 (298)
+..|+.++||+|+.+.=.|+. .+++ +-.+.++... .. .++.++. .....+|+++ .+|+.
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~--~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~ 102 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAP--IYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQ 102 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCc--EEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeE
Confidence 556777999999986444433 3444 5555555321 01 1232211 1234599998 56654
No 170
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=71.61 E-value=25 Score=25.16 Aligned_cols=60 Identities=8% Similarity=0.102 Sum_probs=37.1
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCC--cceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCeee
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQ--EKIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEVK 151 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~--~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~l 151 (298)
+..|+.++|+.|++..-.|+...-. ..+.+..+|....++...+ .+ ...+|++. .+|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~-~~-i~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEK-FE-ITAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHh-cC-CccccEEEEEECCEEE
Confidence 5567788999999886666542111 1367777776655544333 44 35599887 566543
No 171
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=65.61 E-value=19 Score=26.10 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=36.7
Q ss_pred cEEEEecCCChhHHHHHHHHHHc--CCCcceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCeee
Q 022381 89 TTRLYISYTCPYAQRVWITRNCK--GLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEVK 151 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~--gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~l 151 (298)
.+.+|+.++|+.|....-.++.. .....+.+..+|....++...+ . --..+|++. .+|+++
T Consensus 16 vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~-~-~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 16 ILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEA-A-GIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHH-C-CCeeccEEEEEECCeEE
Confidence 46677889999999876666441 1212256677776554443222 2 235789887 566554
No 172
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=65.31 E-value=9.8 Score=37.10 Aligned_cols=75 Identities=23% Similarity=0.150 Sum_probs=46.6
Q ss_pred CcEEEEecCCChhHHHHHHHHHHcCCC-cceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCc----HHHHHHHH
Q 022381 88 GTTRLYISYTCPYAQRVWITRNCKGLQ-EKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGES----LDLMKFID 162 (298)
Q Consensus 88 ~~~~Ly~~~~sp~~~rvrl~L~~~gi~-~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS----~aI~~yL~ 162 (298)
-.+++|..+.||||-.+.-+++...+. -.++...+|....++.. + ......||.+..+|..+.+. ..+++.|.
T Consensus 119 ~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~-~-~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~ 196 (515)
T TIGR03140 119 LHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEV-E-ALGIQGVPAVFLNGEEFHNGRMDLAELLEKLE 196 (515)
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHH-H-hcCCcccCEEEECCcEEEecCCCHHHHHHHHh
Confidence 358899999999999876666654433 12444445554445543 3 34455899999887766553 23455554
Q ss_pred hh
Q 022381 163 SH 164 (298)
Q Consensus 163 ~~ 164 (298)
+.
T Consensus 197 ~~ 198 (515)
T TIGR03140 197 ET 198 (515)
T ss_pred hc
Confidence 43
No 173
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.34 E-value=20 Score=27.70 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=42.8
Q ss_pred CCChhHHHH----HHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCC-------CccEEe--e-CCeeecCcHHHHHHH
Q 022381 96 YTCPYAQRV----WITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLAN-------KVPSLE--H-NNEVKGESLDLMKFI 161 (298)
Q Consensus 96 ~~sp~~~rv----rl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~g-------kvP~L~--~-~g~~l~eS~aI~~yL 161 (298)
.+||.|.++ .=+|++.+-+ ..++.++.++++-|--. -||+. -||+|. . .+..+.+...-...|
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~--~~~v~v~VG~rp~Wk~p-~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~L 119 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPED--VHFVHVYVGNRPYWKDP-ANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHL 119 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCc--eEEEEEEecCCCcccCC-CCccccCCCceeecceeeEEcCccccchHhHhhHHHH
Confidence 479999875 4555655555 88888888877766443 45543 478887 2 345566666666666
Q ss_pred Hhh
Q 022381 162 DSH 164 (298)
Q Consensus 162 ~~~ 164 (298)
.+.
T Consensus 120 ve~ 122 (128)
T KOG3425|consen 120 VEM 122 (128)
T ss_pred HHH
Confidence 554
No 174
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=64.11 E-value=3.8 Score=31.73 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=15.5
Q ss_pred cCCCCCccEEe--eCCeeecCcHHHHHHHHhhCCC
Q 022381 135 VHLANKVPSLE--HNNEVKGESLDLMKFIDSHFEG 167 (298)
Q Consensus 135 ~nP~gkvP~L~--~~g~~l~eS~aI~~yL~~~~~~ 167 (298)
+|....-|-|. -+|..++|..||++||..-|.+
T Consensus 30 v~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~ 64 (122)
T PF09635_consen 30 VNEDESGPLLKDKKSGFELFEPNAIVRYLANDFEG 64 (122)
T ss_dssp E-SS--S--EEE-S--S----HHHHHHHHTT--TT
T ss_pred eCCccccceeeecCCceEEecccHHHHHHHhhcCC
Confidence 44444557885 4688999999999999998864
No 175
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=63.11 E-value=12 Score=36.97 Aligned_cols=59 Identities=12% Similarity=0.239 Sum_probs=37.6
Q ss_pred cEEEEecCCChhHHHHHHHHH----Hc-CCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecC
Q 022381 89 TTRLYISYTCPYAQRVWITRN----CK-GLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGE 153 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~----~~-gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~e 153 (298)
.+++|..+.||+|-.+.-+++ +. +|. .+.+.+. +.+++ .+ ...-..||.++.||+++.+
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~--~~~i~~~--~~~~~-~~-~~~v~~vP~~~i~~~~~~~ 542 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVE--AEMIDVS--HFPDL-KD-EYGIMSVPAIVVDDQQVYF 542 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCce--EEEEECc--ccHHH-HH-hCCceecCEEEECCEEEEe
Confidence 588999999999987644333 33 455 5555443 33443 32 3445679999988875543
No 176
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=60.44 E-value=14 Score=36.14 Aligned_cols=75 Identities=21% Similarity=0.183 Sum_probs=46.7
Q ss_pred CcEEEEecCCChhHHHHHHHHHHcCCC-cceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCc----HHHHHHHH
Q 022381 88 GTTRLYISYTCPYAQRVWITRNCKGLQ-EKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGES----LDLMKFID 162 (298)
Q Consensus 88 ~~~~Ly~~~~sp~~~rvrl~L~~~gi~-~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS----~aI~~yL~ 162 (298)
-.+++|..+.||||-.+.-+++..-+. -.++...+|....++. .+ ......||.+..+|..+.+. ..+++.+.
T Consensus 118 ~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~-~~-~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~ 195 (517)
T PRK15317 118 FHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDE-VE-ARNIMAVPTVFLNGEEFGQGRMTLEEILAKLD 195 (517)
T ss_pred eEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhH-HH-hcCCcccCEEEECCcEEEecCCCHHHHHHHHh
Confidence 358899999999999876665554332 1244444555444443 33 34456899999887665542 34566665
Q ss_pred hh
Q 022381 163 SH 164 (298)
Q Consensus 163 ~~ 164 (298)
+.
T Consensus 196 ~~ 197 (517)
T PRK15317 196 TG 197 (517)
T ss_pred cc
Confidence 53
No 177
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=58.13 E-value=31 Score=29.35 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=35.5
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCC-cceeEeecCCCCCchhhhhhcCCCCCccEEee
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQ-EKIKLVPIDLQNRPDWYMEKVHLANKVPSLEH 146 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~-~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~ 146 (298)
.+.+|+.++||+|..+.-+++..--. .++.+..+|....++ ... ...-..+|+++.
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~-~~~-~~~V~~vPtl~i 192 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPD-LAE-KYGVMSVPKIVI 192 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH-HHH-HhCCccCCEEEE
Confidence 57779999999999887766653221 125555566654444 333 334456999994
No 178
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=57.32 E-value=35 Score=25.78 Aligned_cols=62 Identities=8% Similarity=0.033 Sum_probs=39.5
Q ss_pred cEEEEecCCChhHHHHHHHHHHcC--CCcceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCeeecC
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKG--LQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEVKGE 153 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~g--i~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~l~e 153 (298)
-+..|+.++|+.|+.+.-.++... .+ ++.++.+|....++ +.+ -..-..+|++. .+|+.+..
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~~-l~~-~~~v~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAPF-LVE-KLNIKVLPTVILFKNGKTVDR 90 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCHH-HHH-HCCCccCCEEEEEECCEEEEE
Confidence 356677789999998776664421 22 25677777655443 333 44556899998 67876653
No 179
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=55.07 E-value=64 Score=21.92 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=33.2
Q ss_pred EEEEecCCChhHHHHHHHHHHcCC-CcceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCe
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGL-QEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNE 149 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi-~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~ 149 (298)
+..|+.++|+.|+...-.++..-- .-.+.+..++....++ +.. ......+|+++ .+|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPE-LAE-EYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChh-HHH-hcCcccccEEEEEECCE
Confidence 667788899999988766665111 1123444555543333 332 33345689877 4565
No 180
>PRK10996 thioredoxin 2; Provisional
Probab=54.43 E-value=1e+02 Score=24.15 Aligned_cols=61 Identities=10% Similarity=0.113 Sum_probs=36.4
Q ss_pred cEEEEecCCChhHHHHHHHHHHc--CCCcceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCeee
Q 022381 89 TTRLYISYTCPYAQRVWITRNCK--GLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEVK 151 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~--gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~l 151 (298)
.+..|+.++|+.|+...-.++.. .....+.++.+|....++...+ . --..+|+++ .+|+.+
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~-~-~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSAR-F-RIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHh-c-CCCccCEEEEEECCEEE
Confidence 36667778999999764444332 1112366777777655443332 3 346699887 567643
No 181
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=53.26 E-value=42 Score=24.44 Aligned_cols=53 Identities=9% Similarity=-0.049 Sum_probs=31.3
Q ss_pred cEEEEecCCChhHHHHHHHH--------HHcCCCcceeEeecCCCCC---chhhhhhcCCCCCccEEe
Q 022381 89 TTRLYISYTCPYAQRVWITR--------NCKGLQEKIKLVPIDLQNR---PDWYMEKVHLANKVPSLE 145 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L--------~~~gi~~~~~~~~v~~~~~---~~~~~~~~nP~gkvP~L~ 145 (298)
.+..|+.++|++|++..-.+ .+.+ . +.++.+|.... ...+.+ ......+|++.
T Consensus 14 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~--~~~~~vd~~~~~~~~~~~~~-~~~i~~~Pti~ 77 (104)
T cd02953 14 VFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-D--VVLLRADWTKNDPEITALLK-RFGVFGPPTYL 77 (104)
T ss_pred EEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-C--eEEEEEecCCCCHHHHHHHH-HcCCCCCCEEE
Confidence 35668889999999875332 2222 2 66666776432 223333 33445689887
No 182
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=53.21 E-value=58 Score=23.00 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=32.9
Q ss_pred EEEEecCCChhHHHHHHHHHHc--CCCcceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCe
Q 022381 90 TRLYISYTCPYAQRVWITRNCK--GLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNE 149 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~--gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~ 149 (298)
+..++.++|+.|+...-.++.. ..+-.+.+..+|....++...+ . --..+|++. .+|.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~-~-~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAK-Y-GIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHH-c-CCCcCCEEEEEeCCc
Confidence 5566778899999875444332 1221266677776544433222 2 234689887 4554
No 183
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=52.25 E-value=43 Score=25.23 Aligned_cols=54 Identities=17% Similarity=0.104 Sum_probs=33.0
Q ss_pred EEEE-ecCCChhHHHHHHHHHHcCCCc-ceeEeecCCCCCchhhhhhcCCCCCccEEe
Q 022381 90 TRLY-ISYTCPYAQRVWITRNCKGLQE-KIKLVPIDLQNRPDWYMEKVHLANKVPSLE 145 (298)
Q Consensus 90 ~~Ly-~~~~sp~~~rvrl~L~~~gi~~-~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~ 145 (298)
+.++ +.++||+|+.+.-+++...-.+ .+++..+|....+ .+.. ...-..+|++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~-~l~~-~~~v~~vPt~~ 80 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK-EKAE-KYGVERVPTTI 80 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH-HHHH-HcCCCcCCEEE
Confidence 5555 5679999998877666443221 2455556654433 3444 44567899998
No 184
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=51.31 E-value=55 Score=24.42 Aligned_cols=71 Identities=11% Similarity=0.197 Sum_probs=41.7
Q ss_pred EEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhh--hhhcCC---CCCccEEeeCCe-eecCcHHHHHHHHhh
Q 022381 92 LYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWY--MEKVHL---ANKVPSLEHNNE-VKGESLDLMKFIDSH 164 (298)
Q Consensus 92 Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~--~~~~nP---~gkvP~L~~~g~-~l~eS~aI~~yL~~~ 164 (298)
||+...||+|.+..-.+...+-.-.++++.+.-....+.. .. +++ ...+-+ ..+|. +..++.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYG-ISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcC-cCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHc
Confidence 4677789999997766666665434666655221111101 11 222 233444 55665 999999998886654
No 185
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=49.93 E-value=34 Score=26.06 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=31.9
Q ss_pred EEEEecCCChhHHHHHHHHHHc-C---CCcceeEeecCCCCCchhhhhhcCCCC-CccEEe--e-CCeeec
Q 022381 90 TRLYISYTCPYAQRVWITRNCK-G---LQEKIKLVPIDLQNRPDWYMEKVHLAN-KVPSLE--H-NNEVKG 152 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~-g---i~~~~~~~~v~~~~~~~~~~~~~nP~g-kvP~L~--~-~g~~l~ 152 (298)
+.-|+.++|+.|++..-.+... . ...++..+.++....+ .... .+..| -+|+++ + +|+.+.
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~-~~~~-~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEP-KDEE-FSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCc-hhhh-cccCCCccceEEEECCCCCCch
Confidence 5557778999999874444431 1 2212334444432211 1122 55554 499988 3 566544
No 186
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=45.16 E-value=9.7 Score=29.47 Aligned_cols=60 Identities=22% Similarity=0.299 Sum_probs=29.2
Q ss_pred CCChhHHHHHHHHHH--cCCCcceeEeecCCCCCchhhhh----hcCC---CCCccEEe--eCCeeecCcH
Q 022381 96 YTCPYAQRVWITRNC--KGLQEKIKLVPIDLQNRPDWYME----KVHL---ANKVPSLE--HNNEVKGESL 155 (298)
Q Consensus 96 ~~sp~~~rvrl~L~~--~gi~~~~~~~~v~~~~~~~~~~~----~~nP---~gkvP~L~--~~g~~l~eS~ 155 (298)
.+||.|.++.-.++. .+.+-+..++.+..+++++|--. +.+| ...||+|+ .++..|.|..
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e 106 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEE 106 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhh
Confidence 479999987543332 22443467776666555544221 1233 25689998 4555566544
No 187
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=44.72 E-value=17 Score=31.32 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhccCCCCcccCC-CCHHHHHHHHHHHHHhhhhhhhccCCCCCCChHHHHHHHHHhcCc
Q 022381 207 SAAFDYLETALSKFNDGPFLLGH-FSIADIAYAPFIERYQPFLLEVKKNDITAGRPKLAAWIEEMNKNE 274 (298)
Q Consensus 207 ~~~L~~le~~L~~~~~~~fl~G~-~T~ADi~l~~~l~~~~~~~~~~~~~~~~~~~p~L~~w~~r~~~~p 274 (298)
...++.++..|. +..|.-|. ++-+|+.+|.-+. .-+....+++..+|+..+...-
T Consensus 10 ~~glk~l~~sLA---~ks~~~g~~~s~edv~vf~al~----------~ep~s~~~v~~~~w~~~l~a~~ 65 (231)
T KOG1668|consen 10 PAGLKKLNKSLA---EKSYIEGYQLSKEDVVVFAALG----------VEPQSARLVNAERWYSKLEALL 65 (231)
T ss_pred hhhhhhhhHhhh---cccCCCCCCcccccceeehhcc----------cCcchhhhhHHHHHHHHHHHHH
Confidence 467888999999 79999998 9999999887652 1222346778888887776543
No 188
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=43.66 E-value=74 Score=25.64 Aligned_cols=62 Identities=15% Similarity=0.180 Sum_probs=36.1
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCc---ceeEeecCCCCCchhhhhhcCCC-----CCccEEe--eCCeeec
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQE---KIKLVPIDLQNRPDWYMEKVHLA-----NKVPSLE--HNNEVKG 152 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~---~~~~~~v~~~~~~~~~~~~~nP~-----gkvP~L~--~~g~~l~ 152 (298)
+..|+.++||.|+...-.++..--.+ .+.+..+|....++ +.++.+-. +.+|+++ .+|+.+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~-la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN-VAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH-HHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 66678889999997754443322111 26677777655443 22213222 3489988 6777654
No 189
>PTZ00051 thioredoxin; Provisional
Probab=41.89 E-value=68 Score=22.85 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=33.1
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCc-ceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCee
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQE-KIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEV 150 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~-~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~ 150 (298)
+..|+.++|+.|+...-.++...-.+ ++.++.+|...... +.+ ...-..+|+++ .+|+.
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~-~~~-~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSE-VAE-KENITSMPTFKVFKNGSV 83 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHH-HHH-HCCCceeeEEEEEeCCeE
Confidence 56677889999998755554421111 14555566543222 333 33346789887 45544
No 190
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=40.07 E-value=96 Score=21.95 Aligned_cols=59 Identities=7% Similarity=0.079 Sum_probs=34.4
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCc--ceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCee
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQE--KIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEV 150 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~--~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~ 150 (298)
+..|+.++|+.|++..-.++...-.+ .+.+..+|....++ +.+ .-.-..+|+++ ++|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~-l~~-~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ-IAQ-QFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH-HHH-HcCCCCCCEEEEEeCCEE
Confidence 45567789999998755554322111 25566667654433 333 23345689998 56654
No 191
>PHA02278 thioredoxin-like protein
Probab=39.51 E-value=1.6e+02 Score=21.86 Aligned_cols=61 Identities=8% Similarity=0.046 Sum_probs=32.5
Q ss_pred EEEEecCCChhHHHHHHHHHHcC--CCcceeEeecCCCCC---chhhhhhcCCCCCccEEe--eCCeee
Q 022381 90 TRLYISYTCPYAQRVWITRNCKG--LQEKIKLVPIDLQNR---PDWYMEKVHLANKVPSLE--HNNEVK 151 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~g--i~~~~~~~~v~~~~~---~~~~~~~~nP~gkvP~L~--~~g~~l 151 (298)
+.-|+.++|+.|+...=.++... ..+...+..++.... .+.+.. ..--..+|++. .+|+.+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~-~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVK-LFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHH-HCCCccccEEEEEECCEEE
Confidence 44566789999997764443321 111133444444321 123333 33345689998 577654
No 192
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=37.85 E-value=1.4e+02 Score=22.85 Aligned_cols=60 Identities=10% Similarity=0.021 Sum_probs=35.1
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCC--cceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCeee
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQ--EKIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEVK 151 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~--~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~l 151 (298)
+.-|+..+||.|+.+.=.++..--. ..+.+..+|.+..++ +.+ ..--..+|++. .+|+.+
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~-la~-~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD-FNK-MYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH-HHH-HcCCCCCCEEEEEECCEEE
Confidence 4447778999999875555433222 124566777665443 333 23334599998 566654
No 193
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=37.63 E-value=91 Score=23.22 Aligned_cols=63 Identities=13% Similarity=0.115 Sum_probs=36.5
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCCc-ceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCeeecCcH
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQE-KIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEVKGESL 155 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~~-~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~l~eS~ 155 (298)
+..|+.++|+.|+.+.-.++...-.| .+.++.+|.... .+.+ ..--..+|+++ .+|+.+..-.
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~--~l~~-~~~i~~~Pt~~~f~~G~~v~~~~ 93 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA--FLVN-YLDIKVLPTLLVYKNGELIDNIV 93 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh--HHHH-hcCCCcCCEEEEEECCEEEEEEe
Confidence 55677789999997755554322111 145566665432 3333 33346789988 5777655433
No 194
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=37.60 E-value=1.4e+02 Score=22.19 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=32.4
Q ss_pred EEEEecCCChhHHHHHHHH-----HHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCee
Q 022381 90 TRLYISYTCPYAQRVWITR-----NCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEV 150 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L-----~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~ 150 (298)
+..|+.++|+.|+...-.+ ++.|.. +.+..+|....+. +.. ...-..+|++. .+|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~--v~~~~vd~d~~~~-l~~-~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLG--VGIATVNAGHERR-LAR-KLGAHSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcC--ceEEEEeccccHH-HHH-HcCCccCCEEEEEECCEE
Confidence 5668888999998654332 333333 4555566543322 232 33456789887 56653
No 195
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=37.43 E-value=30 Score=23.25 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=17.2
Q ss_pred cEEEEec----CCChhHHHHHHHHHH
Q 022381 89 TTRLYIS----YTCPYAQRVWITRNC 110 (298)
Q Consensus 89 ~~~Ly~~----~~sp~~~rvrl~L~~ 110 (298)
+|+||-+ ..+.||+||-.+|+.
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHhC
Confidence 4677766 458899999999885
No 196
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=36.89 E-value=2.1e+02 Score=22.67 Aligned_cols=78 Identities=8% Similarity=0.002 Sum_probs=47.2
Q ss_pred CCCcEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCC---C-CccEEeeCCeeecCcHHHHHHH
Q 022381 86 FDGTTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLA---N-KVPSLEHNNEVKGESLDLMKFI 161 (298)
Q Consensus 86 ~~~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~---g-kvP~L~~~g~~l~eS~aI~~yL 161 (298)
.++++.+++..-||+|-..--+|..+.-.-.+.+..+.-+..-. +++ ..+. . ..=+++.+|..+.+|.|+++-+
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~~-~l~-~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~ 83 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQA-LLE-AAGLDPEDVDSVLLVEAGQLLVGSDAAIRIL 83 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhhh-HHh-hcCCChhhhheeeEecCCceEeccHHHHHHH
Confidence 44567788888999998755555555544335555544332211 222 2222 1 1223346899999999999988
Q ss_pred HhhC
Q 022381 162 DSHF 165 (298)
Q Consensus 162 ~~~~ 165 (298)
-..-
T Consensus 84 ~~L~ 87 (137)
T COG3011 84 RLLP 87 (137)
T ss_pred HHCC
Confidence 8764
No 197
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=36.42 E-value=1.7e+02 Score=21.26 Aligned_cols=58 Identities=12% Similarity=0.045 Sum_probs=31.1
Q ss_pred EEEEecCCChhHHHHHHHHHHc--CCCc-ceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCee
Q 022381 90 TRLYISYTCPYAQRVWITRNCK--GLQE-KIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEV 150 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~--gi~~-~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~ 150 (298)
+..|+.++|+.|+...-.++.. .... .+.+..++.+ .++ ..+ ..--..+|++. .+|..
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~-~~~-~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID-TLK-RYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH-HHH-HcCCCcCcEEEEEECCEE
Confidence 5567778999999765444321 1110 1445555544 223 222 33346689776 56653
No 198
>PRK09381 trxA thioredoxin; Provisional
Probab=34.50 E-value=1.8e+02 Score=21.12 Aligned_cols=59 Identities=12% Similarity=0.099 Sum_probs=34.2
Q ss_pred cEEEEecCCChhHHHHHHHHHH----cCCCcceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCeee
Q 022381 89 TTRLYISYTCPYAQRVWITRNC----KGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEVK 151 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~----~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~l 151 (298)
.+..++.++||.|+...-.++. .+-. +.+..+|....+....+ . .-..+|+++ .+|+.+
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~--~~~~~vd~~~~~~~~~~-~-~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGK--LTVAKLNIDQNPGTAPK-Y-GIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCC--cEEEEEECCCChhHHHh-C-CCCcCCEEEEEeCCeEE
Confidence 3556777899999977544432 1212 55666666544443322 3 446799887 566644
No 199
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=34.21 E-value=1.3e+02 Score=22.65 Aligned_cols=17 Identities=24% Similarity=0.546 Sum_probs=13.7
Q ss_pred cEEEEecCCChhHHHHH
Q 022381 89 TTRLYISYTCPYAQRVW 105 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvr 105 (298)
.+..|+.++|++|++..
T Consensus 17 vlv~f~a~wC~~C~~~~ 33 (125)
T cd02951 17 LLLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEEeCCCCHHHHHHH
Confidence 46678889999999864
No 200
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=32.55 E-value=2e+02 Score=21.07 Aligned_cols=55 Identities=13% Similarity=0.237 Sum_probs=30.7
Q ss_pred cEEEEecCCChhHHHHHHHHH-----HcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEe
Q 022381 89 TTRLYISYTCPYAQRVWITRN-----CKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE 145 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~-----~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~ 145 (298)
.+..|+.++||.|++..-.++ ++|.. +.+..++.......+..+...-..+|++.
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~--~~~~~vd~d~~~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSN--VKVAKFNADGEQREFAKEELQLKSFPTIL 83 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCC--eEEEEEECCccchhhHHhhcCCCcCCEEE
Confidence 477788899999997643333 23333 45555554331111211134456789886
No 201
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=30.78 E-value=43 Score=25.36 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=22.0
Q ss_pred ccEEe-eCCeeecCcHHHHHHHHhhCC
Q 022381 141 VPSLE-HNNEVKGESLDLMKFIDSHFE 166 (298)
Q Consensus 141 vP~L~-~~g~~l~eS~aI~~yL~~~~~ 166 (298)
+|.+. .+|.++++|..|+++.+..|.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 45555 789999999999999998875
No 202
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=29.03 E-value=1.4e+02 Score=21.47 Aligned_cols=59 Identities=14% Similarity=0.040 Sum_probs=33.0
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCC--cceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCe
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQ--EKIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNE 149 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~--~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~ 149 (298)
-+..|+.++|+.|+...-.++...-. -.+.+..+|....+. +.+ ..--..+|++. .+|.
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~-~~~-~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM-LCR-SQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH-HHH-HcCCCccCEEEEEcCCC
Confidence 36668889999998764444332111 125566666654333 222 22346789886 4454
No 203
>PF13728 TraF: F plasmid transfer operon protein
Probab=28.81 E-value=97 Score=26.51 Aligned_cols=53 Identities=17% Similarity=0.274 Sum_probs=32.2
Q ss_pred EEEEecCCChhHHH----HHHHHHHcCCCcceeEeecCCCC--------CchhhhhhcCCCCCccEEe
Q 022381 90 TRLYISYTCPYAQR----VWITRNCKGLQEKIKLVPIDLQN--------RPDWYMEKVHLANKVPSLE 145 (298)
Q Consensus 90 ~~Ly~~~~sp~~~r----vrl~L~~~gi~~~~~~~~v~~~~--------~~~~~~~~~nP~gkvP~L~ 145 (298)
+.+++...||+|+. ++.+-+..|+. +..+.+|-.. ......++++. ..+|+|.
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~--v~~vs~DG~~~~~fp~~~~~~g~~~~l~v-~~~Pal~ 188 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFS--VIPVSLDGRPIPSFPNPRPDPGQAKRLGV-KVTPALF 188 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCE--EEEEecCCCCCcCCCCCCCCHHHHHHcCC-CcCCEEE
Confidence 66777789999986 45566666777 6666666321 11222222444 4889987
No 204
>PTZ00102 disulphide isomerase; Provisional
Probab=28.42 E-value=3.1e+02 Score=25.99 Aligned_cols=76 Identities=12% Similarity=0.145 Sum_probs=43.7
Q ss_pred cEEEEecCCChhHHHHHHHHH-----HcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCeee-----cCcHH
Q 022381 89 TTRLYISYTCPYAQRVWITRN-----CKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEVK-----GESLD 156 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~-----~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~l-----~eS~a 156 (298)
.+..|+.++|+.|++..=.++ +++-..++.+..+|.....+...+ .+ -..+|++. .+|..+ .....
T Consensus 52 ~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~-~~-i~~~Pt~~~~~~g~~~~y~g~~~~~~ 129 (477)
T PTZ00102 52 VLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQE-FG-VRGYPTIKFFNKGNPVNYSGGRTADG 129 (477)
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHh-cC-CCcccEEEEEECCceEEecCCCCHHH
Confidence 467788899999997642111 122211266777776543332222 33 34589886 444321 24567
Q ss_pred HHHHHHhhCC
Q 022381 157 LMKFIDSHFE 166 (298)
Q Consensus 157 I~~yL~~~~~ 166 (298)
|.+|+.+..+
T Consensus 130 l~~~l~~~~~ 139 (477)
T PTZ00102 130 IVSWIKKLTG 139 (477)
T ss_pred HHHHHHHhhC
Confidence 8999988754
No 205
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=28.25 E-value=85 Score=25.52 Aligned_cols=35 Identities=20% Similarity=0.485 Sum_probs=24.5
Q ss_pred cEEEEecCCChhHHH----HHHHHHHc-CCCcceeEeecCCC
Q 022381 89 TTRLYISYTCPYAQR----VWITRNCK-GLQEKIKLVPIDLQ 125 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~r----vrl~L~~~-gi~~~~~~~~v~~~ 125 (298)
++++|+...||||.. ++-+++.. ++. ++..++.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~--i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVE--IEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCE--EEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCc--EEEeccccc
Confidence 478899999999975 34444555 776 777766654
No 206
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=28.23 E-value=1.4e+02 Score=23.01 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=28.7
Q ss_pred CCChhHHHHHHHHHHc--CCCcceeEeecCCCCCc------hhhhhhcCCCCCccEEe--eCCeeecC
Q 022381 96 YTCPYAQRVWITRNCK--GLQEKIKLVPIDLQNRP------DWYMEKVHLANKVPSLE--HNNEVKGE 153 (298)
Q Consensus 96 ~~sp~~~rvrl~L~~~--gi~~~~~~~~v~~~~~~------~~~~~~~nP~gkvP~L~--~~g~~l~e 153 (298)
.+||.|+.+.-.++.. ..+..+.++.++.++.+ ..+..+.+-...+|++. .+|..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCCceecc
Confidence 7899999764433221 11112556666664322 22322011113699998 44444443
No 207
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=27.86 E-value=2e+02 Score=24.25 Aligned_cols=60 Identities=12% Similarity=0.132 Sum_probs=34.8
Q ss_pred cEEEEec---CCChhHHHHHHHHHHcCCCc---ceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCee
Q 022381 89 TTRLYIS---YTCPYAQRVWITRNCKGLQE---KIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEV 150 (298)
Q Consensus 89 ~~~Ly~~---~~sp~~~rvrl~L~~~gi~~---~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~ 150 (298)
.+.+|.. ++||.|+.+.=.+++..-.| ++..+.+|....++ +.+ ..--..+|++. .+|..
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~-l~~-~~~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKE-EAE-KYGVERVPTTIILEEGKD 89 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHH-HHH-HcCCCccCEEEEEeCCee
Confidence 3667777 88999998766665542221 14455555433332 333 33456789988 45543
No 208
>PHA03075 glutaredoxin-like protein; Provisional
Probab=27.80 E-value=64 Score=24.83 Aligned_cols=68 Identities=10% Similarity=0.220 Sum_probs=41.8
Q ss_pred CCcEEEEecCCChhHHHHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeC-CeeecCcHHHHHHHHhhC
Q 022381 87 DGTTRLYISYTCPYAQRVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHN-NEVKGESLDLMKFIDSHF 165 (298)
Q Consensus 87 ~~~~~Ly~~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~-g~~l~eS~aI~~yL~~~~ 165 (298)
.+++.|++-|.|+-|.-+.-+|.. ++.+|++..|+.-. | ..-.|.|=+|-.+ +..+ =..+.+||...+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~--ledeY~ilrVNIlS----f---FsK~g~v~~lg~d~~y~l--Inn~~~~lgne~ 70 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKE--LEDEYDILRVNILS----F---FSKDGQVKVLGMDKGYTL--INNFFKHLGNEY 70 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHH--hhccccEEEEEeee----e---eccCCceEEEecccceeh--HHHHHHhhcccE
Confidence 356899999999999999888854 45557777776521 1 1224555555532 2222 134666666544
No 209
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=27.80 E-value=1.8e+02 Score=23.82 Aligned_cols=61 Identities=13% Similarity=0.090 Sum_probs=35.5
Q ss_pred EEEEecCCChhHHHHHHHHHHc--CCCcceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCeeecCc
Q 022381 90 TRLYISYTCPYAQRVWITRNCK--GLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEVKGES 154 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~--gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~l~eS 154 (298)
+..|+.++|+.|+.+--.|+.. .-+ .+.++.|+.... .+.. ..+-..||++. .+|..+..-
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~--~l~~-~f~v~~vPTlllyk~G~~v~~~ 151 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT--GASD-EFDTDALPALLVYKGGELIGNF 151 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch--hhHH-hCCCCCCCEEEEEECCEEEEEE
Confidence 4446668899998654333221 112 266777776532 3333 44556899988 577766543
No 210
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=26.86 E-value=1.4e+02 Score=25.80 Aligned_cols=60 Identities=12% Similarity=0.219 Sum_probs=33.7
Q ss_pred CCcEEEEecCCChhHH----HHHHHHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHH
Q 022381 87 DGTTRLYISYTCPYAQ----RVWITRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFID 162 (298)
Q Consensus 87 ~~~~~Ly~~~~sp~~~----rvrl~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~ 162 (298)
..++.+|....||||. |..-++...+-...+++. ..|.-..|.+..+ ...+-+||.
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~--------------w~pf~l~p~~~~~------g~~~~~~l~ 64 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIR--------------WRPFELDPDLPPE------GLDRKEYLA 64 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEE--------------ecccccCCCCCcc------cccHHHHHH
Confidence 3456778888999996 455555555543222222 3344444444322 344667777
Q ss_pred hhCC
Q 022381 163 SHFE 166 (298)
Q Consensus 163 ~~~~ 166 (298)
.+|+
T Consensus 65 ~k~g 68 (225)
T COG2761 65 QKYG 68 (225)
T ss_pred HHhC
Confidence 7776
No 211
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=25.41 E-value=1.5e+02 Score=21.11 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=29.2
Q ss_pred cEEEEecCCChhHHHHHHHH-----HHcCCCcceeEeecCCCCC-chhhhhhcCCCCCccEEe
Q 022381 89 TTRLYISYTCPYAQRVWITR-----NCKGLQEKIKLVPIDLQNR-PDWYMEKVHLANKVPSLE 145 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L-----~~~gi~~~~~~~~v~~~~~-~~~~~~~~nP~gkvP~L~ 145 (298)
.+.+|+.++|+.|+...-.+ .+.+ ...+.+..+|.... ...+.. ...-..+|.++
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~-~~~i~~~Pt~~ 80 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKE-DGKGVLAAVDCTKPEHDALKE-EYNVKGFPTFK 80 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhh-CCceEEEEEECCCCccHHHHH-hCCCccccEEE
Confidence 36778888999999763222 2221 11245555555431 222333 22335689887
No 212
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=24.72 E-value=1.3e+02 Score=26.44 Aligned_cols=22 Identities=18% Similarity=0.653 Sum_probs=16.9
Q ss_pred CcEEEEecCCChhHHHHHHHHH
Q 022381 88 GTTRLYISYTCPYAQRVWITRN 109 (298)
Q Consensus 88 ~~~~Ly~~~~sp~~~rvrl~L~ 109 (298)
..+..|..+.||||+|.+-.+.
T Consensus 119 ~~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 119 RIVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred eEEEEEECCCChhHHHHHHHHH
Confidence 3466777789999999876654
No 213
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=23.80 E-value=1.5e+02 Score=21.56 Aligned_cols=56 Identities=14% Similarity=0.150 Sum_probs=28.3
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCc-ceeEeecCCCCCchhhhhhcCCCCCccEEe
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQE-KIKLVPIDLQNRPDWYMEKVHLANKVPSLE 145 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~-~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~ 145 (298)
.+..|+.++|+.|++..-.++...-.+ .+.+..+|..+....+.+ ..--..+|++.
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~-~~~V~~~PT~~ 77 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLS-RYGVVGFPTIL 77 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHH-hcCCeecCEEE
Confidence 355677789999998754443321110 123444554412222322 22335689876
No 214
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=23.67 E-value=1.6e+02 Score=24.34 Aligned_cols=24 Identities=13% Similarity=0.332 Sum_probs=18.9
Q ss_pred CCcEEEEecCCChhHHHHHHHHHH
Q 022381 87 DGTTRLYISYTCPYAQRVWITRNC 110 (298)
Q Consensus 87 ~~~~~Ly~~~~sp~~~rvrl~L~~ 110 (298)
+..+.+|..+.||||++..-.+..
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhh
Confidence 345677788999999999877764
No 215
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=23.53 E-value=1.3e+02 Score=20.69 Aligned_cols=22 Identities=14% Similarity=0.111 Sum_probs=16.7
Q ss_pred EEEEecCCChhHHHHHHHHHHc
Q 022381 90 TRLYISYTCPYAQRVWITRNCK 111 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~ 111 (298)
+.+|..+.||+|....-.++..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 3578889999999876666553
No 216
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=23.28 E-value=92 Score=22.77 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=13.8
Q ss_pred cEEEEecCCChhHHHHHHHHH
Q 022381 89 TTRLYISYTCPYAQRVWITRN 109 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~ 109 (298)
.+.+|+.++||+|++..-.+.
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHH
Confidence 356677799999998755554
No 217
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=23.27 E-value=2.2e+02 Score=20.17 Aligned_cols=54 Identities=9% Similarity=0.115 Sum_probs=29.5
Q ss_pred EEEEecCCChhHHHHHHHHHHc--CCCcceeEeecCCCCCchhhhhhcCCCCCccEEe
Q 022381 90 TRLYISYTCPYAQRVWITRNCK--GLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE 145 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~--gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~ 145 (298)
+.+++.++|+.|+...-.++.. ..+..+.+..+|....++-..+ .+. ..+|++.
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~-~~i-~~~P~~~ 77 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQ-YGV-RGFPTIK 77 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHH-CCC-CccCEEE
Confidence 5667778999998764322221 1111255666665544443333 444 4589876
No 218
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=23.19 E-value=4.1e+02 Score=24.82 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=43.3
Q ss_pred cEEEEecCCChhHHHHHHHH-----HHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCee-------ecCc
Q 022381 89 TTRLYISYTCPYAQRVWITR-----NCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEV-------KGES 154 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L-----~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~-------l~eS 154 (298)
.+.+|+.++|+.|++..-.+ .+.+..-.+.+..+|....++ +.+ ...-..+|++. .+|.. ..+.
T Consensus 21 ~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~-l~~-~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~ 98 (462)
T TIGR01130 21 VLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKD-LAQ-KYGVSGYPTLKIFRNGEDSVSDYNGPRDA 98 (462)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHH-HHH-hCCCccccEEEEEeCCccceeEecCCCCH
Confidence 46778889999999764222 222221125666666654333 332 22334588876 33432 1246
Q ss_pred HHHHHHHHhhCC
Q 022381 155 LDLMKFIDSHFE 166 (298)
Q Consensus 155 ~aI~~yL~~~~~ 166 (298)
..|.+++.+..+
T Consensus 99 ~~l~~~i~~~~~ 110 (462)
T TIGR01130 99 DGIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHHhcC
Confidence 678888888754
No 219
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=23.13 E-value=1.5e+02 Score=21.33 Aligned_cols=55 Identities=13% Similarity=0.065 Sum_probs=31.0
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCC--cceeEeecCCCCCchhhhhhcCCCCCccEEe
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQ--EKIKLVPIDLQNRPDWYMEKVHLANKVPSLE 145 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~--~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~ 145 (298)
.+..|+.++|+.|++..-.++...-. ..+.+..+|....++ +.+ ...-..+|++.
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~-~~~-~~~i~~~Pt~~ 78 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES-LCQ-QANIRAYPTIR 78 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH-HHH-HcCCCcccEEE
Confidence 36678889999998764433322111 114556666654333 322 23446789887
No 220
>PHA00159 endonuclease I
Probab=23.11 E-value=2.8e+02 Score=22.10 Aligned_cols=68 Identities=10% Similarity=0.114 Sum_probs=44.0
Q ss_pred cCCChhHHHHHHHHHHcCCCcceeEeecCCC----C--CchhhhhhcCCCCCccEEeeCCeeecCcHHHHHHHHhhCCC
Q 022381 95 SYTCPYAQRVWITRNCKGLQEKIKLVPIDLQ----N--RPDWYMEKVHLANKVPSLEHNNEVKGESLDLMKFIDSHFEG 167 (298)
Q Consensus 95 ~~~sp~~~rvrl~L~~~gi~~~~~~~~v~~~----~--~~~~~~~~~nP~gkvP~L~~~g~~l~eS~aI~~yL~~~~~~ 167 (298)
...|..=.++--.|+-+||+|+||...+.+. + -.++| +-|.|.+ ++..|....|-..=+.-+.++||+
T Consensus 14 ~fRSgLE~k~ak~Le~~gv~~~yE~~ki~y~~pA~~~~YTPDF---~LpnGii--iEvKG~w~~ddR~K~lli~eQ~P~ 87 (148)
T PHA00159 14 AFRSGLEDKVSKQLEKKGVKFDYELWKIPYVIPASDHKYTPDF---LLPNGII--IETKGLWDSDDRKKHLLIREQYPE 87 (148)
T ss_pred cccchHHHHHHHHHHhcCCCeEeeeeeeeeeccCCCCeeCCce---ecCCCCE--EEecccCChHHHHHHHHHHHHCCC
Confidence 3567888899999999999988888777661 1 12334 2356665 555565555555555555666664
No 221
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=22.46 E-value=1.2e+02 Score=18.18 Aligned_cols=26 Identities=8% Similarity=0.240 Sum_probs=21.3
Q ss_pred CCCCccEEeeCCeeecCcHHHHHHHH
Q 022381 137 LANKVPSLEHNNEVKGESLDLMKFID 162 (298)
Q Consensus 137 P~gkvP~L~~~g~~l~eS~aI~~yL~ 162 (298)
-.|++|....++..+..-..|.+|++
T Consensus 23 ~~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 23 HEGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred HcCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 35788988778888888888988876
No 222
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=22.37 E-value=1.9e+02 Score=22.62 Aligned_cols=61 Identities=8% Similarity=0.061 Sum_probs=30.5
Q ss_pred EEEEecCCChhHHHHHHHHHHcC--CCcceeEeecCCCCC-chhhhhhcCCCCCccEEe--e-CCeee
Q 022381 90 TRLYISYTCPYAQRVWITRNCKG--LQEKIKLVPIDLQNR-PDWYMEKVHLANKVPSLE--H-NNEVK 151 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~g--i~~~~~~~~v~~~~~-~~~~~~~~nP~gkvP~L~--~-~g~~l 151 (298)
+..|+.++|+.|++..-.++... ....+.++.++.... ...+.. ..--..+|.++ + +|.++
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~-~~~V~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEID-RYRVDGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHH-HcCCCCCCEEEEECCCCCEE
Confidence 45577789999987654443221 111134454444321 112222 23335689887 3 46544
No 223
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=22.27 E-value=2.3e+02 Score=21.41 Aligned_cols=56 Identities=9% Similarity=-0.059 Sum_probs=31.4
Q ss_pred cEEEEecCCChhHHHHHHHHHHcCCCc--ceeEeecCCCCCchhhhhhcCCCCCccEEe
Q 022381 89 TTRLYISYTCPYAQRVWITRNCKGLQE--KIKLVPIDLQNRPDWYMEKVHLANKVPSLE 145 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~gi~~--~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~ 145 (298)
.+..|+.++|+.|+...-.+++..-.+ .+.+..+|.....+...+ ..--..+|+|.
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~-~~~I~~~PTl~ 89 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRK-QKHFFYFPVIH 89 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHH-hcCCcccCEEE
Confidence 356688899999998766555543211 245566665433222111 12234688887
No 224
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=22.21 E-value=3.1e+02 Score=19.84 Aligned_cols=61 Identities=7% Similarity=-0.026 Sum_probs=32.3
Q ss_pred EEEEecCCChhHHHHHHHHHHcCCC-cceeEeecCCCCCc--hhhhhhcCCCCCccEEe--eCCeee
Q 022381 90 TRLYISYTCPYAQRVWITRNCKGLQ-EKIKLVPIDLQNRP--DWYMEKVHLANKVPSLE--HNNEVK 151 (298)
Q Consensus 90 ~~Ly~~~~sp~~~rvrl~L~~~gi~-~~~~~~~v~~~~~~--~~~~~~~nP~gkvP~L~--~~g~~l 151 (298)
+..|+.++|+.|+...=.++...-. -.+.+..+|....+ ..+.+ ..--..+|+++ .+|..+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~-~~~V~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCR-REKIIEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHH-HcCCCcCCEEEEEeCCeEE
Confidence 4557778999998764444321111 12456666654322 23333 23345589877 466543
No 225
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=21.92 E-value=1.8e+02 Score=20.60 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=32.6
Q ss_pred cEEEEecCCChhHHHHHH-----HHHHcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCe
Q 022381 89 TTRLYISYTCPYAQRVWI-----TRNCKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNE 149 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl-----~L~~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~ 149 (298)
.+..|+.++|+.|+...- +-+..+-.-.+.+..+|....+.. .+ ...-..+|++. .+|.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~-~~-~~~v~~~Pt~~~~~~g~ 84 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHREL-CS-EFQVRGYPTLLLFKDGE 84 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhh-Hh-hcCCCcCCEEEEEeCCC
Confidence 466788889999997532 223333111256666666543332 22 22345689876 4444
No 226
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=21.60 E-value=1e+02 Score=21.24 Aligned_cols=25 Identities=8% Similarity=0.142 Sum_probs=21.2
Q ss_pred CccEEeeCCeeecCcHHHHHHHHhhC
Q 022381 140 KVPSLEHNNEVKGESLDLMKFIDSHF 165 (298)
Q Consensus 140 kvP~L~~~g~~l~eS~aI~~yL~~~~ 165 (298)
+=||+...| ..+|-.+|.+||.+..
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcCC
Confidence 459998888 8899999999999943
No 227
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=21.52 E-value=1.7e+02 Score=20.66 Aligned_cols=55 Identities=9% Similarity=0.103 Sum_probs=31.2
Q ss_pred cEEEEecCCChhHHHHHHHHHH----cCCCcceeEeecCCCC-CchhhhhhcCCCCCccEEe
Q 022381 89 TTRLYISYTCPYAQRVWITRNC----KGLQEKIKLVPIDLQN-RPDWYMEKVHLANKVPSLE 145 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~----~gi~~~~~~~~v~~~~-~~~~~~~~~nP~gkvP~L~ 145 (298)
.+..|+.++|+.|+...-.++. .+-...+.+..+|... .+. +.. ...-..+|++.
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~-~~~i~~~P~~~ 80 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD-LAK-KYGVSGFPTLK 80 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh-hHH-hCCCCCcCEEE
Confidence 4677888999999865333322 1211126666677654 333 332 23345789887
No 228
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=21.15 E-value=1.5e+02 Score=20.80 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=30.8
Q ss_pred CcEEEEecCCChhHHHHHHHHH-----HcCCCcceeEeecCCCCCchhhhhhcCCCCCccEEe
Q 022381 88 GTTRLYISYTCPYAQRVWITRN-----CKGLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE 145 (298)
Q Consensus 88 ~~~~Ly~~~~sp~~~rvrl~L~-----~~gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~ 145 (298)
..+.+|+.++|+.|+...-.++ ..+-+ .+.+..+|....+ .+.+ ......+|.+.
T Consensus 15 ~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~-~~~~-~~~i~~~P~~~ 74 (102)
T TIGR01126 15 DVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATAEK-DLAS-RFGVSGFPTIK 74 (102)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccchH-HHHH-hCCCCcCCEEE
Confidence 3477888899999987533332 22211 2455555554332 2333 33346689885
No 229
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=20.31 E-value=5.6e+02 Score=22.03 Aligned_cols=76 Identities=11% Similarity=0.144 Sum_probs=42.9
Q ss_pred cEEEEecCCChhHHHHHHHHHHc--CCCcceeEeecCCCCCchhhhhhcCCCCCccEEe--eCCeee------cCcHHHH
Q 022381 89 TTRLYISYTCPYAQRVWITRNCK--GLQEKIKLVPIDLQNRPDWYMEKVHLANKVPSLE--HNNEVK------GESLDLM 158 (298)
Q Consensus 89 ~~~Ly~~~~sp~~~rvrl~L~~~--gi~~~~~~~~v~~~~~~~~~~~~~nP~gkvP~L~--~~g~~l------~eS~aI~ 158 (298)
-+..|+.++|+.|++..-.++.. ..+..+.+..+|....++ +.+ ...-..+|++. ++|..+ .....|.
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~-l~~-~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~L~ 132 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALN-LAK-RFAIKGYPTLLLFDKGKMYQYEGGDRSTEKLA 132 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH-HHH-HcCCCcCCEEEEEECCEEEEeeCCCCCHHHHH
Confidence 36678889999998764433321 111125556666544333 333 23345789887 566543 2345677
Q ss_pred HHHHhhCC
Q 022381 159 KFIDSHFE 166 (298)
Q Consensus 159 ~yL~~~~~ 166 (298)
+|+.+.+.
T Consensus 133 ~fi~~~~~ 140 (224)
T PTZ00443 133 AFALGDFK 140 (224)
T ss_pred HHHHHHHH
Confidence 77777764
Done!