Query 022382
Match_columns 298
No_of_seqs 131 out of 989
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 03:06:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2787 Lanthionine synthetase 100.0 1.1E-50 2.4E-55 341.2 25.7 291 4-298 106-403 (403)
2 cd04794 euk_LANCL eukaryotic L 100.0 2.7E-44 5.9E-49 324.5 29.1 287 4-294 45-343 (343)
3 PF05147 LANC_like: Lanthionin 100.0 1.1E-41 2.4E-46 308.9 10.1 289 6-296 52-353 (355)
4 cd04434 LanC_like LanC-like pr 100.0 8.3E-39 1.8E-43 288.4 28.2 281 5-288 44-336 (343)
5 cd04791 LanC_SerThrkinase Lant 100.0 8.1E-39 1.8E-43 286.6 23.0 277 5-295 38-321 (321)
6 cd04792 LanM-like LanM-like pr 100.0 1.1E-37 2.3E-42 311.0 26.2 277 5-292 535-823 (825)
7 cd04793 LanC LanC is the cycla 100.0 4.1E-37 8.9E-42 281.8 24.4 281 5-289 43-373 (382)
8 COG4403 LcnDR2 Lantibiotic mod 100.0 8.5E-34 1.8E-38 266.8 18.5 267 2-297 688-963 (963)
9 cd04794 euk_LANCL eukaryotic L 100.0 2.2E-30 4.7E-35 233.9 20.3 258 10-290 1-287 (343)
10 cd04434 LanC_like LanC-like pr 100.0 2.2E-29 4.7E-34 227.0 21.1 257 10-289 1-282 (343)
11 cd04792 LanM-like LanM-like pr 100.0 9.1E-28 2E-32 239.8 21.9 255 4-287 484-761 (825)
12 cd04793 LanC LanC is the cycla 100.0 3.4E-27 7.4E-32 216.2 22.7 267 10-290 1-310 (382)
13 cd04791 LanC_SerThrkinase Lant 99.9 8.7E-25 1.9E-29 195.8 22.4 239 10-288 1-256 (321)
14 PF05147 LANC_like: Lanthionin 99.9 4E-26 8.6E-31 207.0 9.0 260 5-287 3-288 (355)
15 KOG2787 Lanthionine synthetase 99.8 4E-19 8.7E-24 150.8 16.9 257 5-288 61-341 (403)
16 COG4403 LcnDR2 Lantibiotic mod 99.8 6.5E-19 1.4E-23 167.0 18.7 246 5-286 641-895 (963)
17 cd00249 AGE AGE domain; N-acyl 97.4 0.043 9.4E-07 50.3 20.6 232 16-253 58-338 (384)
18 PF07944 DUF1680: Putative gly 96.7 0.15 3.2E-06 49.0 17.5 219 11-246 59-331 (520)
19 cd00249 AGE AGE domain; N-acyl 96.7 0.033 7E-07 51.1 12.3 138 116-253 52-209 (384)
20 PF07944 DUF1680: Putative gly 96.4 0.091 2E-06 50.4 13.9 131 114-247 61-205 (520)
21 COG4225 Predicted unsaturated 96.2 0.34 7.3E-06 43.0 15.0 228 19-255 44-306 (357)
22 COG4225 Predicted unsaturated 96.0 0.15 3.3E-06 45.2 12.0 180 22-206 90-302 (357)
23 TIGR02474 pec_lyase pectate ly 95.5 0.28 6.1E-06 43.0 11.6 132 118-251 45-217 (290)
24 PF07470 Glyco_hydro_88: Glyco 95.2 1.2 2.5E-05 40.2 15.4 209 52-284 24-261 (336)
25 PF07470 Glyco_hydro_88: Glyco 95.0 1.4 3.1E-05 39.6 15.1 182 21-207 77-287 (336)
26 COG1331 Highly conserved prote 94.9 0.51 1.1E-05 45.8 12.4 131 122-253 416-571 (667)
27 PF09492 Pec_lyase: Pectic aci 94.6 0.063 1.4E-06 46.9 5.1 129 119-249 41-210 (289)
28 COG1331 Highly conserved prote 94.1 0.72 1.6E-05 44.8 11.3 76 177-254 416-505 (667)
29 PF03663 Glyco_hydro_76: Glyco 93.9 5 0.00011 36.8 16.3 229 16-250 41-317 (370)
30 PLN02993 lupeol synthase 93.5 1.2 2.5E-05 44.6 11.9 145 51-207 560-713 (763)
31 PF07221 GlcNAc_2-epim: N-acyl 91.8 0.33 7.1E-06 43.9 5.4 130 122-252 26-174 (346)
32 TIGR02474 pec_lyase pectate ly 90.8 6.5 0.00014 34.6 12.1 118 173-290 45-202 (290)
33 PF03663 Glyco_hydro_76: Glyco 90.7 2.3 5E-05 39.0 9.7 72 177-251 93-189 (370)
34 PF09492 Pec_lyase: Pectic aci 89.8 2.5 5.3E-05 37.2 8.6 116 174-289 41-196 (289)
35 COG3533 Uncharacterized protei 89.2 6.9 0.00015 36.9 11.3 134 112-247 65-208 (589)
36 PLN03012 Camelliol C synthase 87.8 9.5 0.0002 38.3 12.1 140 57-207 566-713 (759)
37 PTZ00470 glycoside hydrolase f 86.0 23 0.0005 34.1 13.3 172 26-204 123-319 (522)
38 KOG2430 Glycosyl hydrolase, fa 86.0 5.7 0.00012 35.4 8.5 85 168-254 183-285 (587)
39 PF07221 GlcNAc_2-epim: N-acyl 79.7 25 0.00053 31.7 10.6 184 58-253 24-249 (346)
40 PF13243 Prenyltrans_1: Prenyl 77.1 2.5 5.3E-05 30.9 2.8 58 139-207 1-58 (109)
41 PTZ00470 glycoside hydrolase f 76.9 17 0.00038 34.9 8.9 75 178-252 161-257 (522)
42 cd02889 SQCY Squalene cyclase 76.0 21 0.00046 31.9 9.1 58 139-208 1-59 (348)
43 TIGR03463 osq_cycl 2,3-oxidosq 75.8 63 0.0014 32.0 12.8 140 53-207 449-595 (634)
44 PLN03012 Camelliol C synthase 75.3 67 0.0015 32.4 12.8 102 51-159 615-723 (759)
45 PF06662 C5-epim_C: D-glucuron 74.1 6.9 0.00015 32.2 4.8 39 166-204 22-62 (189)
46 PLN02993 lupeol synthase 73.9 58 0.0013 32.9 12.0 102 51-159 615-723 (763)
47 PF06662 C5-epim_C: D-glucuron 68.5 33 0.0007 28.3 7.6 38 6-43 23-62 (189)
48 COG3533 Uncharacterized protei 63.9 21 0.00046 33.8 6.2 57 22-78 142-201 (589)
49 PRK11097 endo-1,4-D-glucanase; 62.9 63 0.0014 29.7 9.0 85 169-253 113-215 (376)
50 TIGR01507 hopene_cyclase squal 61.2 1.2E+02 0.0026 30.1 11.3 40 119-158 383-424 (635)
51 TIGR03463 osq_cycl 2,3-oxidosq 60.5 1.2E+02 0.0027 30.0 11.3 78 79-159 525-605 (634)
52 TIGR01507 hopene_cyclase squal 60.5 1.8E+02 0.004 28.8 12.9 117 79-207 471-589 (635)
53 PF00432 Prenyltrans: Prenyltr 59.1 5.5 0.00012 24.0 1.1 33 139-171 3-35 (44)
54 KOG2429 Glycosyl hydrolase, fa 58.4 41 0.00088 32.3 7.0 76 180-255 204-296 (622)
55 TIGR01787 squalene_cyclas squa 56.7 2.1E+02 0.0046 28.3 12.8 118 79-207 460-579 (621)
56 cd02892 SQCY_1 Squalene cyclas 48.6 2.8E+02 0.0061 27.4 11.8 39 120-158 378-421 (634)
57 KOG2244 Highly conserved prote 47.5 2.8E+02 0.006 27.0 11.1 120 132-252 524-678 (786)
58 PF06917 Pectate_lyase_2: Peri 46.6 1.1E+02 0.0025 29.1 7.9 114 176-296 388-515 (557)
59 KOG2204 Mannosyl-oligosacchari 45.7 88 0.0019 30.1 7.1 72 180-251 270-364 (625)
60 PF01532 Glyco_hydro_47: Glyco 43.9 50 0.0011 31.1 5.5 75 177-251 82-178 (452)
61 cd02889 SQCY Squalene cyclase 40.4 2.7E+02 0.0058 24.8 13.8 81 122-207 31-129 (348)
62 KOG3760 Heparan sulfate-glucur 40.1 44 0.00094 30.7 4.1 65 138-202 381-452 (594)
63 KOG2431 1, 2-alpha-mannosidase 39.8 1.5E+02 0.0033 27.7 7.4 86 168-254 171-278 (546)
64 cd02892 SQCY_1 Squalene cyclas 39.1 4E+02 0.0086 26.4 13.5 82 123-206 315-411 (634)
65 PF06917 Pectate_lyase_2: Peri 35.1 1.2E+02 0.0027 28.9 6.3 75 16-91 389-472 (557)
66 COG2942 N-acyl-D-glucosamine 2 34.7 3.7E+02 0.0081 24.8 11.8 133 119-253 57-210 (388)
67 PF01532 Glyco_hydro_47: Glyco 33.7 60 0.0013 30.6 4.3 230 20-254 86-392 (452)
68 COG3531 Predicted protein-disu 28.7 32 0.00069 28.4 1.3 20 165-184 9-28 (212)
69 KOG2429 Glycosyl hydrolase, fa 23.1 7.1E+02 0.015 24.3 13.8 32 221-252 375-406 (622)
70 KOG2430 Glycosyl hydrolase, fa 22.7 5.3E+02 0.012 23.4 7.8 77 126-205 197-281 (587)
71 PLN00123 isocitrate dehydrogen 22.4 4.5E+02 0.0098 24.1 7.6 33 176-208 303-335 (360)
72 PF07678 A2M_comp: A-macroglob 21.9 3.8E+02 0.0081 22.8 6.8 83 122-207 33-125 (246)
73 PF11848 DUF3368: Domain of un 21.2 62 0.0013 19.9 1.3 33 171-210 2-34 (48)
74 PF00759 Glyco_hydro_9: Glycos 20.2 5.4E+02 0.012 23.9 8.1 112 134-245 95-243 (444)
No 1
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=100.00 E-value=1.1e-50 Score=341.23 Aligned_cols=291 Identities=64% Similarity=1.199 Sum_probs=265.3
Q ss_pred CCcceeecCchHHHHHHHHHHHHcCChHHHHHHHHHHhhccC-CCCCCcccccchHHHHHHHHHHhhhhCCCcCcHHHHH
Q 022382 4 CRRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKL-PSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMR 82 (298)
Q Consensus 4 ~~~~sl~~G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~G~aGil~~l~~l~~~~~~~~~~~~~~~ 82 (298)
+..++|..|.+|++.+-+.+++.+++++..+..+..+.+++. .++-+++++.|.+|.+++++.+.+..+..++.++.+.
T Consensus 106 ~~~vTFLCG~aGv~avgAvia~~l~~~~~~~~~l~~f~~l~~~~~dlp~ElLyGRaGYL~a~lflNk~ig~~ti~~~~i~ 185 (403)
T KOG2787|consen 106 SRRVTFLCGRAGVCAVGAVIAHKLGEEEELDDCLARFLSLRLCSSDLPDELLYGRAGYLWACLFLNKYIGQETIPDDDIR 185 (403)
T ss_pred cCceEEECCCcchhHHHHHHHHHhccHHHHHHHHHHHHhcccCCccccHHHHhhHHHHHHHHHHHHhhcCCCcCCHHHHH
Confidence 567899999999988888899999999999999988888744 6677899999999999999999999999999888999
Q ss_pred HHHHHHHHhcHhhhhcCC--CCcceeecCccccccccchHHHHHHHhcCCCCCc---hHHHHHHHHHHHHHccCCCCCCC
Q 022382 83 AVVDEIIKAGRRLANRGR--CPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPD---EVEDVKGTLRYMIKNRFPSGNYP 157 (298)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~---~~~~i~~~l~~~~~~~~~~g~w~ 157 (298)
++++.|+.+.+..+.+.+ +|++|+|.++.++|-|||++||++.|+......+ ..+.++.+++|++.+++++|++|
T Consensus 186 ~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~~rfpsGNyP 265 (403)
T KOG2787|consen 186 SIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQNRFPSGNYP 265 (403)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCchhhhccceehhhhhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHHccCCCCCCC
Confidence 999999999998887665 8999999999999999999999999999875544 47889999999999999999999
Q ss_pred CCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCCC-CccccchhhHHHHHHHHHHHhCCH
Q 022382 158 SSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICHGISGNTYVFLSLYRLTGNV 236 (298)
Q Consensus 158 ~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lCHG~aG~~~~l~~l~~~~~~~ 236 (298)
.+..++.+..+.||||+||+++.+.++++++++++|.+.+.++.+.+|++|+.+. +++|||.+||.++++.+|+.|+|.
T Consensus 266 ~s~~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGlLkkg~GichGvaGNaYvFLsLyRLT~d~ 345 (403)
T KOG2787|consen 266 SSEGNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGLLKKGVGICHGVAGNAYVFLSLYRLTGDM 345 (403)
T ss_pred cccCCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcCCcccccccCchhhhHhHHHHcCcH
Confidence 8876677788999999999999999999999999999999999999999999766 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCCCCccccccchHHHHHHHHHccCCCCCCCCCCCC
Q 022382 237 EYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAYEL 298 (298)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gl~~G~sGi~~~Ll~~~~~~~~~~~~~~~ 298 (298)
+|+.+|..+++.+++...+ .| ...++.++||+.|.+|..+.|++++.|++.+||.+|+
T Consensus 346 kYlyRA~kFae~lld~~~~---~g-~r~pDrpySLfeG~AG~v~~l~Dll~P~~arFP~~El 403 (403)
T KOG2787|consen 346 KYLYRAKKFAEWLLDYGFS---HG-CRTPDRPYSLFEGVAGTVYLLLDLLDPEQARFPGYEL 403 (403)
T ss_pred HHHHHHHHHHHHHHhhhhh---cc-CCCCCCChhHHhcccchhhHhhhhcChhhccCCcCcC
Confidence 9999999999999998642 22 2235789999999999999999999999999999986
No 2
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=100.00 E-value=2.7e-44 Score=324.46 Aligned_cols=287 Identities=51% Similarity=0.962 Sum_probs=235.4
Q ss_pred CCcceeecCchHHHHHHHHHHHHcCChHHHHHHHHHHhhcc---C--CCCCCcccccchHHHHHHHHHHhhhhCCCcCcH
Q 022382 4 CRRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIK---L--PSDLPNELLYGRVGFLWACSFLNKHMGKDTIST 78 (298)
Q Consensus 4 ~~~~sl~~G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~d~~~G~aGil~~l~~l~~~~~~~~~~~ 78 (298)
....|++.|.+|+++++..+++.++|+++.+.+.+.++++. . .++...|+++|.||++++|+.+++.+++++...
T Consensus 45 ~~~~~~~~G~aGi~~~l~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~G~aG~l~~Ll~l~~~~~~~~~~~ 124 (343)
T cd04794 45 DRRISFLCGNAGVYAVGAAVYHYLKDEDEVDEFLSKFLQLLESVVSPDSGLPDELLYGRAGYLYALLFLNKKFGFKKIPS 124 (343)
T ss_pred ccCCCccCCcHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhhcccCCchhhhccHHHHHHHHHHHHHHcCcCCCCH
Confidence 35689999999999999999999999988888887766541 1 133458999999999999999999987554444
Q ss_pred HHHHHHHHHHHHhcHhhhhc--CCCCcceeecCccccccccchHHHHHHHhcCCCC---CchHHHHHHHHHHHHHccCCC
Q 022382 79 AQMRAVVDEIIKAGRRLANR--GRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPS 153 (298)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~---~~~~~~i~~~l~~~~~~~~~~ 153 (298)
+.+.++++.+++..+..... ..+|.+++|.+..++|+|||.+||+++|+++++. +++.+.++++++++.+...++
T Consensus 125 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~ 204 (343)
T cd04794 125 SLIKSICDAILESGRTGAAKYRAPCPLMYEWHGKEYLGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPS 204 (343)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCccccccCceecchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccC
Confidence 67888888877764332221 1244555666677899999999999999999864 457789999999998755567
Q ss_pred CCCCCCCCCC-CCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCC-CCccccchhhHHHHHHHHHH
Q 022382 154 GNYPSSEGSE-SDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLK-RVGICHGISGNTYVFLSLYR 231 (298)
Q Consensus 154 g~w~~~~~~~-~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lCHG~aG~~~~l~~l~~ 231 (298)
|+||+..... .....+||||++||+.+++.+++.++|+++.+.++++.+.+|+.++.. ++++|||.+|++++++.+++
T Consensus 205 g~w~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lCHG~~G~~~~lL~~~~ 284 (343)
T cd04794 205 GNFPSSLGNRKRDRLVQWCHGAPGIVYLLAKAYLVFKEEQYLEAAIKCGELIWKRGLLKKGPGLCHGIAGNAYAFLLLYR 284 (343)
T ss_pred CCCCCccCCCCCCccccccCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCccCCCccccCccchHHHHHHHHH
Confidence 8999764321 335678999999999999999999999999999999999999988765 58999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCccccccchHHHHHHHHHccCCCCCCCC
Q 022382 232 LTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFP 294 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gl~~G~sGi~~~Ll~~~~~~~~~~~ 294 (298)
.+++++++++|..+++.+.+...+. + ...++.++|||+|.+|++++|+++.+|+.+.||
T Consensus 285 ~~~~~~~~~~a~~~~~~~~~~~~~~---~-~~~~~~~~~l~~G~aG~~~~ll~~~~p~~~~f~ 343 (343)
T cd04794 285 LTGDLKYLYRACKFAEFLINYGFKN---G-ARIPDRPFSLFEGLAGTACFLADLLQPRQAGFP 343 (343)
T ss_pred HhCcHHHHHHHHHHHHHHhcchhhh---c-cCCCCCCchhhccHHhHHHHHHHHcCcccccCC
Confidence 9999999999999998888775431 1 223468999999999999999999999999998
No 3
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=100.00 E-value=1.1e-41 Score=308.92 Aligned_cols=289 Identities=23% Similarity=0.414 Sum_probs=208.1
Q ss_pred cceeecCchHHHHHHHHHHHHcCChHHHHHHHHHHhhc---cCCCCCC--cccccchHHHHHHHHHHhhhhCCCcCcHHH
Q 022382 6 RVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEI---KLPSDLP--NELLYGRVGFLWACSFLNKHMGKDTISTAQ 80 (298)
Q Consensus 6 ~~sl~~G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~d~~~G~aGil~~l~~l~~~~~~~~~~~~~ 80 (298)
++|+|+|.+|+++++..+++..++....+...+.+.+. ....+.. +|+++|.+|++++++.+++.++++++. +.
T Consensus 52 ~~gl~~G~~Gi~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~D~l~G~aGi~~~ll~~~~~~~~~~~l-~~ 130 (355)
T PF05147_consen 52 SIGLFSGLAGIAYALSYLSKRLGDEKYIEELLKRILNIIENSISNDSNNDYDLLSGLAGIGLYLLSLYEKTKDPKYL-DI 130 (355)
T ss_dssp --STTTSCHHHHHHHHHHCCCTCHHHHHHHHHHHHHHCHHHHHHCT--GGCSTTTSHHHHHHHHCCHHHHHCCHHS--HH
T ss_pred CCcccCChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhhcccccchhhcccHHHHHHHHHHHhhccchHHH-HH
Confidence 78999999999999988888777665554444444332 1112233 899999999999999999888777666 47
Q ss_pred HHHHHHHHHHhcHhhhhcCCCCcceee-cCccccccccchHHHHHHHhcCC-CC---CchHHHHHHHHHHHHHccC-CCC
Q 022382 81 MRAVVDEIIKAGRRLANRGRCPLMYEW-HGKKYWGAAHGLAGIMHVLMDME-LK---PDEVEDVKGTLRYMIKNRF-PSG 154 (298)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~G~aHG~aGi~~~L~~~~-~~---~~~~~~i~~~l~~~~~~~~-~~g 154 (298)
+.++++++++...... ....+....| .+..++|||||.+||+++|++++ +. +++.+.+++.++++.+... .++
T Consensus 131 i~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 209 (355)
T PF05147_consen 131 IEKILEKLLESIINDD-PSENQIGSEWKEGFINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDG 209 (355)
T ss_dssp HHHHHHHCCCHHCCCH-TCCGSSSHHCHTTBEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCC
T ss_pred HHHHHHHHHHHHhhcc-cccCCCccccCCCCccCCccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccC
Confidence 7777777776543211 0112333334 45678999999999999999998 44 2356789999999987654 456
Q ss_pred CCCCCCCCCCC-cccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc-CCCCCccccchhhHHHHHHHHHHH
Q 022382 155 NYPSSEGSESD-RLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG-LLKRVGICHGISGNTYVFLSLYRL 232 (298)
Q Consensus 155 ~w~~~~~~~~~-~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lCHG~aG~~~~l~~l~~~ 232 (298)
.||........ .+++||||++||++++..+.+.++++.+.+.++++.+.+++++ ...++++|||.+|++.+++.+++.
T Consensus 210 ~~~~~~~~~~~~~~~~WC~G~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~l~~~~~~ 289 (355)
T PF05147_consen 210 GWPDNRNNSNYKSRPSWCYGSPGILLALLKAYKILDDEEYDEEAEQALESILQKGLFLNNPSLCHGTAGILEILLDLYKY 289 (355)
T ss_dssp T--SECTHHHHHC--SSSSSHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-TCTTSS-STTSHHHHHHHHHHHHHH
T ss_pred CCCCCCCccccccccccccCcHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHccccCCCCceeCchHHhHHHHHHHHHH
Confidence 69976532211 1689999999999999999999999999999999999888876 567899999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCccccccchHHHHHHHHHccCCCCCCCCCC
Q 022382 233 TGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSEARFPAY 296 (298)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gl~~G~sGi~~~Ll~~~~~~~~~~~~~ 296 (298)
++++++.+.++++.+.+++...+.......+....++|||+|.+||+++|+++.+|++++||-+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~Gi~~~ll~~~~~~~~~~~~~ 353 (355)
T PF05147_consen 290 TGDEEYKELANKLIQKLLSYYDENGYFPGEPRYRISFGLMTGIAGILYALLRLLNPDKPNWPSI 353 (355)
T ss_dssp H--HCCHHHHHHHHHHHCTTCCC---HHHTS-STTTTSTTTSHHHHHHHHHHHCSGGGS--TTT
T ss_pred cCCHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCCCccccHHHHHHHHHHhcCCCCCCCCcc
Confidence 9999999999888777776544311011123356899999999999999999999999999864
No 4
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=100.00 E-value=8.3e-39 Score=288.36 Aligned_cols=281 Identities=35% Similarity=0.578 Sum_probs=216.5
Q ss_pred CcceeecCchHHHHHHHHHHHHcCChHHHHHHHHHHhhcc--C---CCCCCcccccchHHHHHHHHHHhhhhCCCcCcHH
Q 022382 5 RRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIK--L---PSDLPNELLYGRVGFLWACSFLNKHMGKDTISTA 79 (298)
Q Consensus 5 ~~~sl~~G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~d~~~G~aGil~~l~~l~~~~~~~~~~~~ 79 (298)
.+.|+|+|.+|+++++..+++.++++++.+.+.+.++.+. . ....++|+++|.+|++++++.+++.++++.+. +
T Consensus 44 ~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~G~aG~~~~ll~~~~~~~~~~~~-~ 122 (343)
T cd04434 44 TDISLFSGLAGIAYALAALSKGLGDQELLKELLELLLLLVELILEDLKDLNYDLLSGLAGLLLALLLLYKTFGEEIFL-E 122 (343)
T ss_pred CCeeeecchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhcccCCCCcceeechHHHHHHHHHHHHhcCCcCHH-H
Confidence 4789999999999999999999999999888888777652 1 13467899999999999999999988777665 5
Q ss_pred HHHHHHHHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcCCCCC---chHHHHHHHHHHHHHccCC-CCC
Q 022382 80 QMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP---DEVEDVKGTLRYMIKNRFP-SGN 155 (298)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~---~~~~~i~~~l~~~~~~~~~-~g~ 155 (298)
.+.++++++++..........++ .....+..+.|++||.+||+++|+++++.. ...+.++.++.++.+...+ .+.
T Consensus 123 ~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (343)
T cd04434 123 LIRKILDYLLELGKNGDGKIRWP-MYFPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQDDSGGF 201 (343)
T ss_pred HHHHHHHHHHHhhhhccCCCcee-eeccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHccCCCCCC
Confidence 88888988888654322110000 001123467899999999999999998742 2445666667666543333 344
Q ss_pred CCCC-CCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC--CCCCccccchhhHHHHHHHHHHH
Q 022382 156 YPSS-EGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGL--LKRVGICHGISGNTYVFLSLYRL 232 (298)
Q Consensus 156 w~~~-~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lCHG~aG~~~~l~~l~~~ 232 (298)
|+.. .....+..++||||++||+.++..+++.++++++.+.+++.++.++++.. ..+++||||.+|++.+++.+++.
T Consensus 202 ~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lChG~~G~~~~ll~l~~~ 281 (343)
T cd04434 202 WWPSRSNGGNRFLVAWCHGAPGILLALLLAYKALGDDKYDEAAEKALELAWKRGLLELKNPGLCHGIAGNLLILLLLYKL 281 (343)
T ss_pred CCCCCCCCCccccceecCCChhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhccCCCCCcCcCccchHHHHHHHHHH
Confidence 5531 12234567899999999999999999999999999999999888887765 46899999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCccccccchHHHHHHHHHccCC
Q 022382 233 TGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEP 288 (298)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gl~~G~sGi~~~Ll~~~~~ 288 (298)
++++++.+.+.++...+........ ....+....++|||+|.|||+++|+++.+|
T Consensus 282 ~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~gl~~G~aGi~~~ll~~~~~ 336 (343)
T cd04434 282 TGDLKFLARALALALLLISHANGWL-CGGDSTGDRSPGLMTGLAGIALALLRLLNP 336 (343)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhhc-ccCcCCCCCCchHHhhHHHHHHHHHHHhCC
Confidence 9999999999888877766543211 111123568999999999999999999998
No 5
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=100.00 E-value=8.1e-39 Score=286.60 Aligned_cols=277 Identities=18% Similarity=0.234 Sum_probs=212.3
Q ss_pred CcceeecCchHHHHHHHHHHHHcCChHHHHHHHHHHhhccCCCCCCcccccchHHHHHHHHHHhhhhCCCcCcHHHHHHH
Q 022382 5 RRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAV 84 (298)
Q Consensus 5 ~~~sl~~G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~G~aGil~~l~~l~~~~~~~~~~~~~~~~~ 84 (298)
.+.|+|+|.+|+++++.++ ++.+..+.+.+.+.+. ..++.++|+++|.+|++++++.+++. +++++. +.+.++
T Consensus 38 ~~~gl~~G~~Gi~~~l~~~----~~~~~~~~~~~~~~~~-~~~~~~~dl~~G~aG~~~~ll~l~~~-~~~~~l-~~a~~~ 110 (321)
T cd04791 38 SPPGLYDGRAGIAWVLIEL----GHPARAKALFDTLLDE-PSANLNIDLASGLAGIGLALLYFART-GDPALL-EAAAKI 110 (321)
T ss_pred CCCccccChhhHHHHHHHc----CCHHHHHHHHHHHhcc-cccccCCccccchHHHHHHHHHHHhc-CChHHH-HHHHHH
Confidence 5789999999999887663 4444444444433321 23346789999999999999999999 888876 488888
Q ss_pred HHHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcCCCC---CchHHHHHHHHHHHHHccC-CCCCCCCCC
Q 022382 85 VDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRF-PSGNYPSSE 160 (298)
Q Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~---~~~~~~i~~~l~~~~~~~~-~~g~w~~~~ 160 (298)
++++.+...+. ... ..|...+..+.||+||.|||+++|+++++. +++++.++++++++.+... +.+.|....
T Consensus 111 ~~~l~~~~~~~---~~~-~~~~~~~~~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~ 186 (321)
T cd04791 111 AELLAEALERG---DPA-LLWPDFDRVDHGLLHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQVD 186 (321)
T ss_pred HHHHHHHhhcc---ccc-cccccCCCCCCccccCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceEcC
Confidence 88887764321 111 112112335689999999999999999975 3468889999999886443 334443322
Q ss_pred CCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCCCCccccchhhHHHHHHHHHHHhCCHHHHH
Q 022382 161 GSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNVEYLY 240 (298)
Q Consensus 161 ~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~l~~l~~~~~~~~~~~ 240 (298)
+..+..++||||++||+++++++++.++|+++.+.++++++.+.+.. ..+++||||.+|++.+++.+++.++++++.+
T Consensus 187 -~~~~~~~~wchG~aGi~~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~-~~~~~lchG~~G~~~~l~~~~~~~~~~~~~~ 264 (321)
T cd04791 187 -EGARLLPYLCSGSAGLGLLMLRLEAITGDKRWRDEADGIAHAALSSC-YANPGLFSGTAGLGAHLNDLAAEGDNALYKA 264 (321)
T ss_pred -CCCccCcccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhh-ccCccccCCcHhHHHHHHhhcccccChHHHH
Confidence 23345789999999999999999999999999999999998887654 4689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhccCCCC---CCCccccccchHHHHHHHHHccCCCCCCCCC
Q 022382 241 RAKAFACFLYDRAQKLIAEGKMHG---GDRPYSLFEGIGGMTHLFLDMIEPSEARFPA 295 (298)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~gl~~G~sGi~~~Ll~~~~~~~~~~~~ 295 (298)
.+.++.+++++...... ..++++ ...++|||+|.|||+++|+|+.+++..+||+
T Consensus 265 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~gl~~G~aGi~~~ll~l~~~~~~~~p~ 321 (321)
T cd04791 265 AAERLALYLIATADEIE-GPVFPGDQGLRISTDLATGTAGILLFLLRLLTRARSWLPF 321 (321)
T ss_pred HHHHHHHHhccccCCcc-ccccCCccceeeccccccchHHHHHHHHHHhcCCcccCCC
Confidence 99999988887654311 012233 2468999999999999999999988888985
No 6
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=100.00 E-value=1.1e-37 Score=310.96 Aligned_cols=277 Identities=19% Similarity=0.258 Sum_probs=221.0
Q ss_pred CcceeecCchHHHHHHHHHHHHcCChHHHHHHHHHHhhcc--CCCCCCcccccchHHHHHHHHHHhhhhCCCcCcHHHHH
Q 022382 5 RRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIK--LPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMR 82 (298)
Q Consensus 5 ~~~sl~~G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~G~aGil~~l~~l~~~~~~~~~~~~~~~ 82 (298)
.+.|+|+|.+|+++++..+++.++++.+.+.+.+.++.+. ...+..+|+++|.||++++|+.+++.++++++. +.+.
T Consensus 535 ~~~gl~~G~aGi~~~L~~l~~~~~~~~~~~~a~~~~~~l~~~~~~~~~~D~~~G~aGii~~Ll~l~~~~~~~~~l-~~a~ 613 (825)
T cd04792 535 TGIGAFSGLGGILYALTHLGKLLKDDRLLNLAKEILDLIDELIEKDEKLDFISGAAGLILVLLSLYELFLSERFL-DLAL 613 (825)
T ss_pred cCceeEechhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccCCCEeeecHHHHHHHHHHHhccCChHHH-HHHH
Confidence 5789999999999999999999999988888777666541 234466999999999999999999999888776 4788
Q ss_pred HHHHHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcCCCC---CchHHHHHHHHHHHHHccC-CCCCCCC
Q 022382 83 AVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRF-PSGNYPS 158 (298)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~---~~~~~~i~~~l~~~~~~~~-~~g~w~~ 158 (298)
++++++++...... ... +...+..+.||+||.|||+++|+++++. +.+.+.++++++++.+... ..++|+.
T Consensus 614 ~~~~~l~~~~~~~~---~~~--~~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~~ 688 (825)
T cd04792 614 KCGDHLLENASNED---GGI--GPAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWPR 688 (825)
T ss_pred HHHHHHHHhhhhcc---CCc--ccccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCCC
Confidence 88888876533211 111 1112335689999999999999999874 2357788888888764322 3457883
Q ss_pred CCCCCCCcccccccCchhHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHhcCCCCCccccchhhHHHHHHHHHHHhCCH
Q 022382 159 SEGSESDRLVHWCHGAPGVTLTLAKAAEV--FGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNV 236 (298)
Q Consensus 159 ~~~~~~~~~~~wChG~~Gi~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~l~~l~~~~~~~ 236 (298)
. .......+||||++||+++++.+.+. .+++.+.+.++++++.+++.++..++|||||.+|++.+++.+++.++++
T Consensus 689 ~--~~~~~~~~WChG~~GI~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~~~~~~~slCHG~~Gil~~ll~~~~~~~~~ 766 (825)
T cd04792 689 K--DGNSFSAAWCHGAPGILLARLELLKFNDLDDEELKEEIEIALKTTLKEGFGNNHSLCHGDLGNLEILLYAAKAFGDE 766 (825)
T ss_pred c--CcCCCCCcccCCcHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhcCCCCCeecCCCcchHHHHHHHHHhcCCH
Confidence 2 23345689999999999999999999 7889999999999998887777778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCC---CCCCCccccccchHHHHHHHHHccCCC-CCC
Q 022382 237 EYLYRAKAFACFLYDRAQKLIAEGKM---HGGDRPYSLFEGIGGMTHLFLDMIEPS-EAR 292 (298)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~gl~~G~sGi~~~Ll~~~~~~-~~~ 292 (298)
++.+.+.+.++.+++...+ .++. +....++|||+|.|||+++|+|+.+|+ .|+
T Consensus 767 ~~~~~a~~~~~~l~~~~~~---~~~~~g~~~~~~~~glm~G~aGIgy~LLrl~~p~~vps 823 (825)
T cd04792 767 KLQELANSLAIKVLSQGKK---NGWLCGLPRGFESPGLMTGLAGIGYGLLRLAAPDRVPS 823 (825)
T ss_pred HHHHHHHHHHHHHHHHHHh---cCccCCCCCCCCCchhhhhHHHHHHHHHhhhCCCCCCC
Confidence 9999999998888887654 2332 334578999999999999999999974 443
No 7
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=100.00 E-value=4.1e-37 Score=281.76 Aligned_cols=281 Identities=18% Similarity=0.227 Sum_probs=200.5
Q ss_pred CcceeecCchHHHHHHHHHHH-HcCChHHHHHHHHHHhhc---c--------CCCCCCcccccchHHHHHHHHHHhhhhC
Q 022382 5 RRVTFICGRAGVCALGAVLAK-HAGDERLLDHYLTKFKEI---K--------LPSDLPNELLYGRVGFLWACSFLNKHMG 72 (298)
Q Consensus 5 ~~~sl~~G~~Gi~~~l~~~~~-~~~~~~~~~~~~~~~~~~---~--------~~~~~~~d~~~G~aGil~~l~~l~~~~~ 72 (298)
.+.|+|+|.+|+++++.++.+ ...++++.+.+.+.+..+ . ..++.++|+++|.||++.+|+.+++ .
T Consensus 43 ~~~s~f~G~~Gi~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~yD~i~G~aGi~~~Ll~~~~--~ 120 (382)
T cd04793 43 YSSSLFSGAAGVAFALLILSDNGKRYQELLESLDELIKAIVRRRLEDAKSGEPPTPTNYDVISGLSGIGRYLLLRHE--P 120 (382)
T ss_pred CCCcccccHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceeechHHHHHHHHhccC--c
Confidence 467999999999988887766 334555544544433322 1 1345669999999999999998871 1
Q ss_pred CCcCcHHHHHHHHHHHHHhcHhhhhcCCCCc-----cee----ecCccccccccchHHHHHHHhcCCCC----CchHHHH
Q 022382 73 KDTISTAQMRAVVDEIIKAGRRLANRGRCPL-----MYE----WHGKKYWGAAHGLAGIMHVLMDMELK----PDEVEDV 139 (298)
Q Consensus 73 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~----~~~~~~~G~aHG~aGi~~~L~~~~~~----~~~~~~i 139 (298)
+.... ..+.++.+++++....... ..++. ... ..+..++|||||++||+++|+++++. +...+.+
T Consensus 121 ~~~~~-~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~i 198 (382)
T cd04793 121 DSELL-REILDYLVYLTEPLNQDIT-LYIWSENQPSETESKEFPEGHINLGLAHGIAGPLALLALAKERGIRVDGQLEAI 198 (382)
T ss_pred chhHH-HHHHHHHHHHHHHHhcCCC-CccCcCcCCCccccccCCCccccccchhcchHHHHHHHHHHHcCCCcCChHHHH
Confidence 21121 2455666666554221100 00000 000 01345789999999999999999753 4578899
Q ss_pred HHHHHHHHHccC--CCCCCCCCC-----------CCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Q 022382 140 KGTLRYMIKNRF--PSGNYPSSE-----------GSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWK 206 (298)
Q Consensus 140 ~~~l~~~~~~~~--~~g~w~~~~-----------~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (298)
+++++|+.+..+ +.++|+... ....+.+++||||++||+++++.+++.++|+++.+.+.++++.+++
T Consensus 199 ~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~ 278 (382)
T cd04793 199 QKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALK 278 (382)
T ss_pred HHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 999999887554 234554321 0112346899999999999999999999999999999999887765
Q ss_pred hcC----CCCCccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhccC--------CCCCCCccccccc
Q 022382 207 RGL----LKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGK--------MHGGDRPYSLFEG 274 (298)
Q Consensus 207 ~~~----~~~~~lCHG~aG~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------~~~~~~~~gl~~G 274 (298)
+.. ..+++||||.+|++++++.+++.++++++.+.++++.+.++++..+....+. .+....++|||+|
T Consensus 279 ~~~~~~~~~~~~lChG~~G~~~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~G 358 (382)
T cd04793 279 DKKQLSKLISPTLCHGLAGLLFIFYLLYKDTNTNEFKSALEYLLNQIISSYSEEEPFGFKDIEETTGSIEWLDDSGLLEG 358 (382)
T ss_pred ChhhhccCCCCCcCccHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhcccccccccchhhhcccccccCCceeecC
Confidence 422 2579999999999999999999999999999999999988887654211110 1224578999999
Q ss_pred hHHHHHHHHHccCCC
Q 022382 275 IGGMTHLFLDMIEPS 289 (298)
Q Consensus 275 ~sGi~~~Ll~~~~~~ 289 (298)
.+||+++|+++.+|+
T Consensus 359 ~aGI~l~LL~~~~~~ 373 (382)
T cd04793 359 AAGIALTLLSYYNGE 373 (382)
T ss_pred HHHHHHHHHHhhhCC
Confidence 999999999999987
No 8
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=100.00 E-value=8.5e-34 Score=266.81 Aligned_cols=267 Identities=17% Similarity=0.259 Sum_probs=220.5
Q ss_pred CCCCcceeecCchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--cCCCCCCcccccchHHHHHHHHHHhhhhCCCcCcHH
Q 022382 2 HGCRRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEI--KLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTA 79 (298)
Q Consensus 2 ~~~~~~sl~~G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~G~aGil~~l~~l~~~~~~~~~~~~ 79 (298)
+| ..+|.|+|.+|+.+++..++..++|....+.+.+.+..+ .......+|+++|.+|++.+|..+|+.++++++. +
T Consensus 688 ~~-~~iga~~G~~g~~yal~~I~~~~~~~~l~~~~~~~i~~le~~v~~~~~~d~i~Gl~g~i~~L~~iYk~~~epk~l-~ 765 (963)
T COG4403 688 NP-INIGAFTGLSGYFYALWKIYSVTRDNYLIQSAENSIRHLEILVQKSKDPDFINGLAGVICVLVSIYKLTDEPKFL-E 765 (963)
T ss_pred CC-cccccccccchhhhhhHHHHHhcccHHHHHHHHHHHHHHHHHHhhccCcchhhccHHHHHHHHHHHhhccchHHH-H
Confidence 45 779999999999888888999999998888888877765 2334456999999999999999999999888887 4
Q ss_pred HHHHHHHHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcCCCCCc---hHHHHHHHHHHHHHccCCCCCC
Q 022382 80 QMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPD---EVEDVKGTLRYMIKNRFPSGNY 156 (298)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~---~~~~i~~~l~~~~~~~~~~g~w 156 (298)
.+..+++++.+...... . |+ +..+||+||+|||+++|+.+++.++ .++.+++.+.++.. .+.+
T Consensus 766 ~ais~~~~l~~~~v~~d---~------s~-~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~~~~Er~-~f~~--- 831 (963)
T COG4403 766 LAISLGRILMEKIVGND---S------SE-TVLLGFSHGASGIILTLLKLYEATGEESLLKKIKELLSYERM-KFSD--- 831 (963)
T ss_pred HHHHHHHHHHHHhhccc---c------cc-ceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HHHH---
Confidence 88888888887643211 1 22 4569999999999999999998643 45777777777653 3311
Q ss_pred CCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCCCCccccchhhHHHHHHHHHHHhCCH
Q 022382 157 PSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNV 236 (298)
Q Consensus 157 ~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lCHG~aG~~~~l~~l~~~~~~~ 236 (298)
..+-||||.+||+.++..+.+.+.|+.+.++++.++..+.++++. |.++|||+.|++.+++.+++.++++
T Consensus 832 ---------~~~~Wc~g~~gilv~rl~l~~~~~de~i~~Ei~~~l~~~i~~glg-n~~~Chgdfg~ie~l~~~a~~l~~~ 901 (963)
T COG4403 832 ---------KFTRWCSGAPGILVSRLLLKKIYDDESIDREIQQALKTIINNGLG-NDSLCHGDFGIIEVLLHYAKILSDS 901 (963)
T ss_pred ---------HHHHHhcCCcceeechhhhhhhcchHHHHHHHHHHHHHHHhccCC-CccccccchHHHHHHHHHHHHhCCH
Confidence 146799999999999999999999999999999999999999997 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccCC---CCCCCccccccchHHHHHHHHHccCC-CCCCCCCCC
Q 022382 237 EYLYRAKAFACFLYDRAQKLIAEGKM---HGGDRPYSLFEGIGGMTHLFLDMIEP-SEARFPAYE 297 (298)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~~~gl~~G~sGi~~~Ll~~~~~-~~~~~~~~~ 297 (298)
+.++.+...+..+.+.+.+ .|+. +....+.|||+|.+||+|.|+|+..| ..|+++.+|
T Consensus 902 ~l~es~~~~~~~~~~k~~~---~g~~~~~~~~~~~~glm~GvtGigY~lLR~~~p~~vpsiL~le 963 (963)
T COG4403 902 ELLESANKLANELVSKAIT---YGINQGLNHANESFGLMNGVTGIGYSLLRISSPKFVPSILWLE 963 (963)
T ss_pred HHHHHHHHHHHHHHHhhcc---ccccccCCCccchhHHHhhhHHHHHHHHHHhCcccCCceeecC
Confidence 9999998877777766543 3332 22456899999999999999999999 678877765
No 9
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=99.97 E-value=2.2e-30 Score=233.92 Aligned_cols=258 Identities=17% Similarity=0.193 Sum_probs=187.4
Q ss_pred ecCchHHHHHHHHHHHH----cCChHHHHHHHHHHhhc--cCCCCCCcccccchHHHHHHHHHHhhhhCCCcCcHHHHHH
Q 022382 10 ICGRAGVCALGAVLAKH----AGDERLLDHYLTKFKEI--KLPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRA 83 (298)
Q Consensus 10 ~~G~~Gi~~~l~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~d~~~G~aGil~~l~~l~~~~~~~~~~~~~~~~ 83 (298)
|+|.+|+++++.++++. ++++++.+.+.+.++.. .++.+...|++.|.+|+++++..+++.++++++.+ .+.+
T Consensus 1 Y~G~~Gi~~~l~~l~~~~~~~~~~~~y~~~a~~~i~~~~~~~~~~~~~~~~~G~aGi~~~l~~l~~~~~d~~~~~-~~~~ 79 (343)
T cd04794 1 YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPDDRRISFLCGNAGVYAVGAAVYHYLKDEDEVD-EFLS 79 (343)
T ss_pred CcChHHHHHHHHHHHhccccccCchHHHHHHHHHHHHHHhhcccccCCCccCCcHHHHHHHHHHHHHhcChHHHH-HHHH
Confidence 68999999999999999 99999988888776654 23345678999999999999999999998877653 5555
Q ss_pred HHHHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcCCCCC----chHHHHHHHHHHHHHc---cCC--CC
Q 022382 84 VVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP----DEVEDVKGTLRYMIKN---RFP--SG 154 (298)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~----~~~~~i~~~l~~~~~~---~~~--~g 154 (298)
.++++++...... +....++.||.||++++|+.+++.. ...+.+++.++.+++. ... ..
T Consensus 80 ~~~~~~~~~~~~~------------~~~~~d~l~G~aG~l~~Ll~l~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~ 147 (343)
T cd04794 80 KFLQLLESVVSPD------------SGLPDELLYGRAGYLYALLFLNKKFGFKKIPSSLIKSICDAILESGRTGAAKYRA 147 (343)
T ss_pred HHHHHHHHHhhcc------------cCCchhhhccHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhhhccCC
Confidence 6666554321100 0113588999999999999997642 1244555555443321 111 12
Q ss_pred CCCCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh----cCC----------CCCccccchh
Q 022382 155 NYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR----GLL----------KRVGICHGIS 220 (298)
Q Consensus 155 ~w~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------~~~~lCHG~a 220 (298)
.|+...........+||||.+||+++++.+.+.++++++.+.++++++.+.+. +.. ...+||||.+
T Consensus 148 ~~~~~~~~~~~~~~G~aHG~aGI~~~L~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~g~w~~~~~~~~~~~~~~wChG~~ 227 (343)
T cd04794 148 PCPLMYEWHGKEYLGAAHGLAGILYILLQTPLFLLKPSLAPLIKRSLDYLLSLQFPSGNFPSSLGNRKRDRLVQWCHGAP 227 (343)
T ss_pred CCCccccccCceecchhhhHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHHHhhccCCCCCCccCCCCCCccccccCCCc
Confidence 35433222233458999999999999999999999999999999998766443 211 1257999999
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCccccccchHHHHHHHHHccCCCC
Q 022382 221 GNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPSE 290 (298)
Q Consensus 221 G~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gl~~G~sGi~~~Ll~~~~~~~ 290 (298)
|++.+++.+++.++++++.+.+++..+.+... | . ...+++||+|.+|+++.|+++.++..
T Consensus 228 Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------g-~--~~~~~~lCHG~~G~~~~lL~~~~~~~ 287 (343)
T cd04794 228 GIVYLLAKAYLVFKEEQYLEAAIKCGELIWKR-------G-L--LKKGPGLCHGIAGNAYAFLLLYRLTG 287 (343)
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh-------C-C--ccCCCccccCccchHHHHHHHHHHhC
Confidence 99999999999999999888877765543321 1 1 12468999999999999999876543
No 10
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=99.97 E-value=2.2e-29 Score=227.00 Aligned_cols=257 Identities=20% Similarity=0.210 Sum_probs=190.5
Q ss_pred ecCchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--cCCCC--CCcccccchHHHHHHHHHHhhhhCCCcCcHHHHHHHH
Q 022382 10 ICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEI--KLPSD--LPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVV 85 (298)
Q Consensus 10 ~~G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~d~~~G~aGil~~l~~l~~~~~~~~~~~~~~~~~~ 85 (298)
|+|.+||++++.++++.++++++.+.+.+.++.+ ..... ...++++|.+|+++++..+++.++++++. +.+.+++
T Consensus 1 y~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~G~~Gi~~~l~~l~~~~~~~~~~-~~~~~~~ 79 (343)
T cd04434 1 YHGAAGIALLLLELYRVTPDEKYQDLAHKALEYIVKSLSSLPDTDISLFSGLAGIAYALAALSKGLGDQELL-KELLELL 79 (343)
T ss_pred CCChHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHhCCCCCeeeecchHHHHHHHHHHHHHcCCHHHH-HHHHHHH
Confidence 6899999999999999999988877777666654 12222 46899999999999999999988887654 3455555
Q ss_pred HHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcCCCC---CchHHHHHHHHHHHHHccCC--CC-CCCCC
Q 022382 86 DEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFP--SG-NYPSS 159 (298)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~---~~~~~~i~~~l~~~~~~~~~--~g-~w~~~ 159 (298)
+.+...... . ......++.||.||++++|+.+++. +...+.+++..+++.+...+ ++ .|+..
T Consensus 80 ~~~~~~~~~---~---------~~~~~~d~~~G~aG~~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 147 (343)
T cd04434 80 LLLVELILE---D---------LKDLNYDLLSGLAGLLLALLLLYKTFGEEIFLELIRKILDYLLELGKNGDGKIRWPMY 147 (343)
T ss_pred HHhhhhhhc---c---------cCCCCcceeechHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHhhhhccCCCceeee
Confidence 555443210 0 0123589999999999999999864 45677888888887764332 22 34411
Q ss_pred CCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh---------------cCCCCCccccchhhHHH
Q 022382 160 EGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR---------------GLLKRVGICHGISGNTY 224 (298)
Q Consensus 160 ~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~lCHG~aG~~~ 224 (298)
........+||||.+||++++..+++.+.++.+.+.++.+.....+. ....+++||||.+|++.
T Consensus 148 -~~~~~~~~g~~HG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wChG~~Gi~~ 226 (343)
T cd04434 148 -FPEGRVNLGLAHGLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQDDSGGFWWPSRSNGGNRFLVAWCHGAPGILL 226 (343)
T ss_pred -ccCCccccchhhhhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHccCCCCCCCCCCCCCCCccccceecCCChhHHH
Confidence 12234568999999999999999999998888888887776543221 01134899999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCccccccchHHHHHHHHHccCCC
Q 022382 225 VFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEPS 289 (298)
Q Consensus 225 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gl~~G~sGi~~~Ll~~~~~~ 289 (298)
+++.+++.++++.+.+.+.+..+.+...... ...+++||+|.+|++++++++.+..
T Consensus 227 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~lChG~~G~~~~ll~l~~~~ 282 (343)
T cd04434 227 ALLLAYKALGDDKYDEAAEKALELAWKRGLL---------ELKNPGLCHGIAGNLLILLLLYKLT 282 (343)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHhhhc---------cCCCCCcCcCccchHHHHHHHHHHh
Confidence 9999999999999988887776665554321 1578999999999999999987543
No 11
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=99.96 E-value=9.1e-28 Score=239.79 Aligned_cols=255 Identities=20% Similarity=0.191 Sum_probs=190.0
Q ss_pred CCcceeecCchHHHHHHHHHHHHcCChHHHHHHHHHHhhcc--CCC----CCCcccccchHHHHHHHHHHhhhhCCCcCc
Q 022382 4 CRRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIK--LPS----DLPNELLYGRVGFLWACSFLNKHMGKDTIS 77 (298)
Q Consensus 4 ~~~~sl~~G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~d~~~G~aGil~~l~~l~~~~~~~~~~ 77 (298)
..+.++|+|.+||++++.++++.++++++.+.+.+.++.+. ... ..+.++++|.+|+++++..+++.++++++.
T Consensus 484 ~~~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~G~aGi~~~L~~l~~~~~~~~~~ 563 (825)
T cd04792 484 PLGNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFSGLGGILYALTHLGKLLKDDRLL 563 (825)
T ss_pred cCCCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEechhHHHHHHHHHHHHcCCHHHH
Confidence 35679999999999999999999999988877777666541 111 246789999999999999999998887665
Q ss_pred HHHHHHHHHHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcCCCC---CchHHHHHHHHHHHHHccCCCC
Q 022382 78 TAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPSG 154 (298)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~---~~~~~~i~~~l~~~~~~~~~~g 154 (298)
+.+.++++.+.+... .....|+.||.||++++|+.+++. +.+.+.++++++++.+....+.
T Consensus 564 -~~a~~~~~~l~~~~~---------------~~~~~D~~~G~aGii~~Ll~l~~~~~~~~~l~~a~~~~~~l~~~~~~~~ 627 (825)
T cd04792 564 -NLAKEILDLIDELIE---------------KDEKLDFISGAAGLILVLLSLYELFLSERFLDLALKCGDHLLENASNED 627 (825)
T ss_pred -HHHHHHHHHHHHhhc---------------cccCCCEeeecHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHhhhhcc
Confidence 355555555433211 113479999999999999999864 3467888888888875433222
Q ss_pred CCCCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc------------CCCCCccccchhhH
Q 022382 155 NYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG------------LLKRVGICHGISGN 222 (298)
Q Consensus 155 ~w~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~lCHG~aG~ 222 (298)
.|... .......+||||.+||++++..+++.++++++.+.+.++++...... ...+++||||.+|+
T Consensus 628 ~~~~~--~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~~~~~~~w~~~~~~~~~~~WChG~~GI 705 (825)
T cd04792 628 GGIGP--AEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLFSEEGWNWPRKDGNSFSAAWCHGAPGI 705 (825)
T ss_pred CCccc--ccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhcCHhhcCCCCcCcCCCCCcccCCcHHH
Confidence 22211 12345689999999999999999999999999999999886542210 11247999999999
Q ss_pred HHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCccccccchHHHHHHHHHccC
Q 022382 223 TYVFLSLYRL--TGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIE 287 (298)
Q Consensus 223 ~~~l~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gl~~G~sGi~~~Ll~~~~ 287 (298)
+.+++.+++. .+++.+.+.+.+..+.+... +...+++||+|.+|++..|+.+..
T Consensus 706 ~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~-----------~~~~~~slCHG~~Gil~~ll~~~~ 761 (825)
T cd04792 706 LLARLELLKFNDLDDEELKEEIEIALKTTLKE-----------GFGNNHSLCHGDLGNLEILLYAAK 761 (825)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHh-----------cCCCCCeecCCCcchHHHHHHHHH
Confidence 9999999998 67777777665554433321 134578999999999999998764
No 12
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=99.96 E-value=3.4e-27 Score=216.21 Aligned_cols=267 Identities=17% Similarity=0.137 Sum_probs=179.8
Q ss_pred ecCchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--cCCCC-CCcccccchHHHHHHHHHHhh-hhCCCcCcHHHHHHHH
Q 022382 10 ICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEI--KLPSD-LPNELLYGRVGFLWACSFLNK-HMGKDTISTAQMRAVV 85 (298)
Q Consensus 10 ~~G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~d~~~G~aGil~~l~~l~~-~~~~~~~~~~~~~~~~ 85 (298)
|+|.+||++++.++++.++++++.+.+.+.++.+ .+.+. ...++++|.+|+++++..+.+ ...++++. +.+.+..
T Consensus 1 y~G~~GIalf~~~l~~~~~~~~~~~~a~~~l~~~~~~l~~~~~~~s~f~G~~Gi~~al~~~~~~~~~~~~~~-~~~~~~~ 79 (382)
T cd04793 1 SHGAPGIALLLSELAKHTKDEGYWERVHQYLSKALNYLLSLGYSSSLFSGAAGVAFALLILSDNGKRYQELL-ESLDELI 79 (382)
T ss_pred CCcHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHccCcHhHHHHH-HHHHHHH
Confidence 6899999999999999999998888777766654 12222 467899999999999999876 22333322 2333444
Q ss_pred HHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcCC-CCCchHHHHHHHHHHHHHccCC--CCCCCCCCC-
Q 022382 86 DEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDME-LKPDEVEDVKGTLRYMIKNRFP--SGNYPSSEG- 161 (298)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~-~~~~~~~~i~~~l~~~~~~~~~--~g~w~~~~~- 161 (298)
..+++........ .+. ......+|.||.||++.+|++++ ...+..+.+.+.++.+.+.... .+.|+....
T Consensus 80 ~~l~~~~~~~~~~--~~~----~~~~~yD~i~G~aGi~~~Ll~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 153 (382)
T cd04793 80 KAIVRRRLEDAKS--GEP----PTPTNYDVISGLSGIGRYLLLRHEPDSELLREILDYLVYLTEPLNQDITLYIWSENQP 153 (382)
T ss_pred HHHHHHHHHHHhc--CCC----CCCCCCceeechHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhcCCCCccCcCcCC
Confidence 4443321111000 110 01234799999999999999997 3344445566666665543221 112432210
Q ss_pred --------CCCCcccccccCchhHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHh-------------------------
Q 022382 162 --------SESDRLVHWCHGAPGVTLTLAKAAEVF-GEKEFLQAAVDAGEVVWKR------------------------- 207 (298)
Q Consensus 162 --------~~~~~~~~wChG~~Gi~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~------------------------- 207 (298)
.......+||||.+||+.+|..+++.. .++++.+.++++++...+.
T Consensus 154 ~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 233 (382)
T cd04793 154 SETESKEFPEGHINLGLAHGIAGPLALLALAKERGIRVDGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPN 233 (382)
T ss_pred CccccccCCCccccccchhcchHHHHHHHHHHHcCCCcCChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccc
Confidence 011235699999999999999999887 7888888888876543210
Q ss_pred -cCCCCCccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCccccccchHHHHHHHHHcc
Q 022382 208 -GLLKRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMI 286 (298)
Q Consensus 208 -~~~~~~~lCHG~aG~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gl~~G~sGi~~~Ll~~~ 286 (298)
....+++||||.+|++.+++.+++.++++.+.+.+.+..+.+...... . ....+++||+|.+|+++.|+++.
T Consensus 234 ~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~--~~~~~~~lChG~~G~~~~l~~~~ 306 (382)
T cd04793 234 NPNPFRDAWCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKKQ-----L--SKLISPTLCHGLAGLLFIFYLLY 306 (382)
T ss_pred cCCCCCCCCCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChhh-----h--ccCCCCCcCccHHHHHHHHHHHH
Confidence 001247899999999999999999999999998887776655543211 0 02468899999999999999987
Q ss_pred CCCC
Q 022382 287 EPSE 290 (298)
Q Consensus 287 ~~~~ 290 (298)
++..
T Consensus 307 ~~~~ 310 (382)
T cd04793 307 KDTN 310 (382)
T ss_pred HHhC
Confidence 6544
No 13
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=99.94 E-value=8.7e-25 Score=195.81 Aligned_cols=239 Identities=21% Similarity=0.216 Sum_probs=168.4
Q ss_pred ecCchHHHHHHHHHHHHcCChHHHHHHHHHHhhcc--CCCCCCcccccchHHHHHHHHHHhhhhCCCcCcHHHHHHHHHH
Q 022382 10 ICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIK--LPSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDE 87 (298)
Q Consensus 10 ~~G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~G~aGil~~l~~l~~~~~~~~~~~~~~~~~~~~ 87 (298)
|+|.+||++++.+++. ..+.+...+.+++.. .......++++|.+|+++++..+... +..+++++.
T Consensus 1 ~~G~aGi~~~l~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~gl~~G~~Gi~~~l~~~~~~--------~~~~~~~~~ 68 (321)
T cd04791 1 AHGAAGVLMALLRSGF----GDYAENALDWIEEAATRELSGSPPGLYDGRAGIAWVLIELGHP--------ARAKALFDT 68 (321)
T ss_pred CchHHHHHHHHHHhcC----CCCCchHHHHHHHHhhccCCCCCCccccChhhHHHHHHHcCCH--------HHHHHHHHH
Confidence 6899999999887651 112223333333321 22224579999999999998876432 233444444
Q ss_pred HHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcCCCC--CchHHHHHHHHHHHHHccCCCCCCCCCCCCCCC
Q 022382 88 IIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELK--PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESD 165 (298)
Q Consensus 88 l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~--~~~~~~i~~~l~~~~~~~~~~g~w~~~~~~~~~ 165 (298)
+.+... .....++.||.+|++++|+.+++. +++.+.++++.+++.+...+...|+... +...
T Consensus 69 ~~~~~~---------------~~~~~dl~~G~aG~~~~ll~l~~~~~~~~l~~a~~~~~~l~~~~~~~~~~~~~~-~~~~ 132 (321)
T cd04791 69 LLDEPS---------------ANLNIDLASGLAGIGLALLYFARTGDPALLEAAAKIAELLAEALERGDPALLWP-DFDR 132 (321)
T ss_pred Hhcccc---------------cccCCccccchHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccccccc-cCCC
Confidence 332210 113579999999999999999865 4467888888888875433222222111 1223
Q ss_pred cccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc------C-------CCCCccccchhhHHHHHHHHHHH
Q 022382 166 RLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG------L-------LKRVGICHGISGNTYVFLSLYRL 232 (298)
Q Consensus 166 ~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-------~~~~~lCHG~aG~~~~l~~l~~~ 232 (298)
...+||||.+||+++++.+++.++|+++.+.++++++...+.- . ...+.||||.+|++.+++.+++.
T Consensus 133 ~~~G~~hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~wchG~aGi~~~l~~l~~~ 212 (321)
T cd04791 133 VDHGLLHGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDDGGLLQVDEGARLLPYLCSGSAGLGLLMLRLEAI 212 (321)
T ss_pred CCCccccCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCCCCceEcCCCCccCcccCCCcHHHHHHHHHHHHh
Confidence 4679999999999999999999999999999999987764321 1 11367999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCccccccchHHHHHHHHHccCC
Q 022382 233 TGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEP 288 (298)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gl~~G~sGi~~~Ll~~~~~ 288 (298)
++|+++.+.+++..+.+... ...++++|+|.+|++++++++.+.
T Consensus 213 ~~d~~~~~~a~~~~~~~~~~------------~~~~~~lchG~~G~~~~l~~~~~~ 256 (321)
T cd04791 213 TGDKRWRDEADGIAHAALSS------------CYANPGLFSGTAGLGAHLNDLAAE 256 (321)
T ss_pred cCCHHHHHHHHHHHHHHhhh------------hccCccccCCcHhHHHHHHhhccc
Confidence 99999998887766555432 246789999999999999987653
No 14
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=99.93 E-value=4e-26 Score=207.01 Aligned_cols=260 Identities=18% Similarity=0.258 Sum_probs=179.3
Q ss_pred CcceeecCchHHHHHHHHHHHHcCChHHHHHHHHHHhhcc--CCCC--CCcccccchHHHHHHHHHHhhhhCCCcCcHHH
Q 022382 5 RRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIK--LPSD--LPNELLYGRVGFLWACSFLNKHMGKDTISTAQ 80 (298)
Q Consensus 5 ~~~sl~~G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~d~~~G~aGil~~l~~l~~~~~~~~~~~~~ 80 (298)
.+.|+|+|.+|+++++.++++.++|+++.+.+.+.++++. +... ....+++|.+|+++++..+.+..++....
T Consensus 3 ~~~sly~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gl~~G~~Gi~~~l~~~~~~~~~~~~~--- 79 (355)
T PF05147_consen 3 LDYSLYDGSAGIALFLSELYRITGDPKYLDLAEKLLEKLINYIENNPYDSIGLFSGLAGIAYALSYLSKRLGDEKYI--- 79 (355)
T ss_dssp CGGSTTTSHHHHHHHHHCCCCCCTHHHHHHHHHHHHHHHCCCHHCC--S--STTTSCHHHHHHHHHHCCCTCHHHHH---
T ss_pred CCCcCCCchHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhccCcCCcccCChHHHHHHHHHHHHhccchHHH---
Confidence 4689999999999999999999999999999998888762 1122 27899999999999999998776644322
Q ss_pred HHHHHHHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcCCC---CCchHHHHHHHHHHHHHccCCC--CC
Q 022382 81 MRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMEL---KPDEVEDVKGTLRYMIKNRFPS--GN 155 (298)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~---~~~~~~~i~~~l~~~~~~~~~~--g~ 155 (298)
++..+.+........... . ....++.+|.||++.+++.+++ .+.+++.+.+.++.+.+..... ..
T Consensus 80 -~~~l~~~~~~i~~~~~~~-~--------~~~~D~l~G~aGi~~~ll~~~~~~~~~~~l~~i~~~~~~l~~~~~~~~~~~ 149 (355)
T PF05147_consen 80 -EELLKRILNIIENSISND-S--------NNDYDLLSGLAGIGLYLLSLYEKTKDPKYLDIIEKILEKLLESIINDDPSE 149 (355)
T ss_dssp -HHHHHHHHHCHHHHHHCT-----------GGCSTTTSHHHHHHHHCCHHHHHCCHHS-HHHHHHHHHCCCHHCCCHTCC
T ss_pred -HHHHHHHHHHHHHhhhhc-c--------cccchhhcccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhccccc
Confidence 233333333222111110 0 0117899999999999999984 3345677777777665433221 11
Q ss_pred CCCCCCC-CCCcccccccCchhHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHhc------C----C-C----CCccccc
Q 022382 156 YPSSEGS-ESDRLVHWCHGAPGVTLTLAKAA-EVFGEKEFLQAAVDAGEVVWKRG------L----L-K----RVGICHG 218 (298)
Q Consensus 156 w~~~~~~-~~~~~~~wChG~~Gi~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~----~-~----~~~lCHG 218 (298)
.+..... ......++.||.+||++++..++ +.++++++.+.++++++...+.. + . . .++||||
T Consensus 150 ~~~~~~~~~~~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WC~G 229 (355)
T PF05147_consen 150 NQIGSEWKEGFINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDDGGWPDNRNNSNYKSRPSWCYG 229 (355)
T ss_dssp GSSSHHCHTTBEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGCCT--SECTHHHHHC--SSSSS
T ss_pred CCCccccCCCCccCCccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCcccCCCCCCCCccccccccccccC
Confidence 1111000 23446899999999999999999 58999999999999987765432 1 0 1 4799999
Q ss_pred hhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCccccccchHHHHHHHHHccC
Q 022382 219 ISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIE 287 (298)
Q Consensus 219 ~aG~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gl~~G~sGi~~~Ll~~~~ 287 (298)
.+|++.++..+++.++++.+.+.+++..+.+.+.. ....++++|+|.+|+++.+..+.+
T Consensus 230 ~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~lCHG~aG~~~~l~~~~~ 288 (355)
T PF05147_consen 230 SPGILLALLKAYKILDDEEYDEEAEQALESILQKG----------LFLNNPSLCHGTAGILEILLDLYK 288 (355)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-----------TCTTSS-STTSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcc----------ccCCCCceeCchHHhHHHHHHHHH
Confidence 99999999999999999999888877766655531 046789999999999999998764
No 15
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=99.83 E-value=4e-19 Score=150.80 Aligned_cols=257 Identities=18% Similarity=0.225 Sum_probs=181.8
Q ss_pred CcceeecCchHHHHHHHHHHHHcCChHHHHHHHHHHhhccC--CCCCCcccccchHHHHHHHHHHhhhhCCCcCcHHHHH
Q 022382 5 RRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEIKL--PSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMR 82 (298)
Q Consensus 5 ~~~sl~~G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~~G~aGil~~l~~l~~~~~~~~~~~~~~~ 82 (298)
.+.++|+|.+|+++++..+|+.|+|...++...+.++.... .+...+.|+.|.||+..+-..+++..++++. ..
T Consensus 61 ~d~tlYtG~~GiAfl~~kly~vTrd~~~L~~~~e~Vk~~~~~~~s~~~vTFLCG~aGv~avgAvia~~l~~~~~----~~ 136 (403)
T KOG2787|consen 61 RDGTLYTGWLGIAFLYLKLYEVTRDLYDLLLCLEIVKACLVASRSSRRVTFLCGRAGVCAVGAVIAHKLGEEEE----LD 136 (403)
T ss_pred cCCceeechHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccCceEEECCCcchhHHHHHHHHHhccHHH----HH
Confidence 56789999999999999999999999999888888776521 2345589999999999888888888887643 33
Q ss_pred HHHHHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcCCCC---Cc-hHHHHHHHHHHHHHcc--C-CCCC
Q 022382 83 AVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELK---PD-EVEDVKGTLRYMIKNR--F-PSGN 155 (298)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~---~~-~~~~i~~~l~~~~~~~--~-~~g~ 155 (298)
....+++..... . ..++ --+-.|-+|.+++++-+.+. .. ..+.++...+.+++.- . +.++
T Consensus 137 ~~l~~f~~l~~~---~--~dlp--------~ElLyGRaGYL~a~lflNk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~ 203 (403)
T KOG2787|consen 137 DCLARFLSLRLC---S--SDLP--------DELLYGRAGYLWACLFLNKYIGQETIPDDDIRSIVQAILTSGRELAKKEN 203 (403)
T ss_pred HHHHHHHhcccC---C--cccc--------HHHHhhHHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 444444332110 0 1111 24678999999999888653 11 2244554555444321 1 1222
Q ss_pred --CCCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-----------C--CCccccchh
Q 022382 156 --YPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL-----------K--RVGICHGIS 220 (298)
Q Consensus 156 --w~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~--~~~lCHG~a 220 (298)
=|-..........+=.||.+||...++.-.--..++.+.++++..+++.++..+. + -..||||..
T Consensus 204 ~~cPLmYewhg~~Y~GAAhGLagI~~vLm~~~L~~d~~~~~~dVK~sldym~~~rfpsGNyP~s~~~~~drLVhWcHGAp 283 (403)
T KOG2787|consen 204 SPCPLMYEWHGKRYWGAAHGLAGILYVLMDPTLKVDQPALLKDVKGSLDYMIQNRFPSGNYPSSEGNKRDRLVHWCHGAP 283 (403)
T ss_pred CCCCchhhhccceehhhhhhHHHHHHHHhCCCCCCcchhHHHhhhhHHHHHHHccCCCCCCCcccCCCcceeeeeccCCc
Confidence 1111111223456779999999999888443334567888998899888775441 1 178999999
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCccccccchHHHHHHHHHccCC
Q 022382 221 GNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMIEP 288 (298)
Q Consensus 221 G~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gl~~G~sGi~~~Ll~~~~~ 288 (298)
|+++.|.++++++++++|++.+.+..+.+.++.. -...+|+|+|+||.+|++|.+++-
T Consensus 284 Gv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGl----------Lkkg~GichGvaGNaYvFLsLyRL 341 (403)
T KOG2787|consen 284 GVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGL----------LKKGVGICHGVAGNAYVFLSLYRL 341 (403)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh----------hhcCCcccccccCchhhhHhHHHH
Confidence 9999999999999999999999888877766531 235689999999999999998764
No 16
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=99.82 E-value=6.5e-19 Score=166.98 Aligned_cols=246 Identities=18% Similarity=0.184 Sum_probs=178.9
Q ss_pred CcceeecCchHHHHHHHHHHHHcCChHHHHHHHHHHhhc--cCC-C--CCCcccccchHHHHHHHHHHhhhhCCCcCcHH
Q 022382 5 RRVTFICGRAGVCALGAVLAKHAGDERLLDHYLTKFKEI--KLP-S--DLPNELLYGRVGFLWACSFLNKHMGKDTISTA 79 (298)
Q Consensus 5 ~~~sl~~G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~-~--~~~~d~~~G~aGil~~l~~l~~~~~~~~~~~~ 79 (298)
-+.++|+|.+||++++++++.+||...|.+.|.+.+..+ .++ + +.+..-+.|.+|+.+++..++..+++..+. .
T Consensus 641 ~g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~~L~~~~~sv~~~~~~~~iga~~G~~g~~yal~~I~~~~~~~~l~-~ 719 (963)
T COG4403 641 LGNDLYDGSAGIALFFAYLALVTGKDYYKEIAIKALQDSRKSVNNNLNPINIGAFTGLSGYFYALWKIYSVTRDNYLI-Q 719 (963)
T ss_pred CCchhhcCcchHHHHHHHHHHhcChHHHHHHHHHHHHHHHHhhhhccCCcccccccccchhhhhhHHHHHhcccHHHH-H
Confidence 467899999999999999999999999998888877655 111 1 134678899999999999999988775433 2
Q ss_pred HHHHHHHHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcCCCCC---chHHHHHHHHHHHHHccCCCCCC
Q 022382 80 QMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKP---DEVEDVKGTLRYMIKNRFPSGNY 156 (298)
Q Consensus 80 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~---~~~~~i~~~l~~~~~~~~~~g~w 156 (298)
.+.+.+.++....+ .. ...||..|.+|++.+|.++|+.+ ..++.+....+.+.+.......|
T Consensus 720 ~~~~~i~~le~~v~----~~-----------~~~d~i~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~~v~~d~s 784 (963)
T COG4403 720 SAENSIRHLEILVQ----KS-----------KDPDFINGLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKIVGNDSS 784 (963)
T ss_pred HHHHHHHHHHHHHh----hc-----------cCcchhhccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhccccc
Confidence 33344444333221 11 23789999999999999999753 45677777777777544322223
Q ss_pred CCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-CCCCccccchhhHHHHHHHHHHHhCC
Q 022382 157 PSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGL-LKRVGICHGISGNTYVFLSLYRLTGN 235 (298)
Q Consensus 157 ~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lCHG~aG~~~~l~~l~~~~~~ 235 (298)
+ ....++.||++||+++++.++++++++.+.+.+.+.+..-... + ..-.-||||..|++...+.+.+...|
T Consensus 785 ~-------~~l~gfshg~sgi~~tL~~ly~~T~e~~l~~~i~e~~~~Er~~-f~~~~~~Wc~g~~gilv~rl~l~~~~~d 856 (963)
T COG4403 785 E-------TVLLGFSHGASGIILTLLKLYEATGEESLLKKIKELLSYERMK-FSDKFTRWCSGAPGILVSRLLLKKIYDD 856 (963)
T ss_pred c-------ceecccccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCcceeechhhhhhhcch
Confidence 3 2578999999999999999999999999999998876322111 1 12367999999999998888888777
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCccccccchHHHHHHHHHcc
Q 022382 236 VEYLYRAKAFACFLYDRAQKLIAEGKMHGGDRPYSLFEGIGGMTHLFLDMI 286 (298)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~gl~~G~sGi~~~Ll~~~ 286 (298)
++..+..+.....+... +.. +-++|+|.-|++-.|+.+.
T Consensus 857 e~i~~Ei~~~l~~~i~~-----------glg-n~~~Chgdfg~ie~l~~~a 895 (963)
T COG4403 857 ESIDREIQQALKTIINN-----------GLG-NDSLCHGDFGIIEVLLHYA 895 (963)
T ss_pred HHHHHHHHHHHHHHHhc-----------cCC-CccccccchHHHHHHHHHH
Confidence 66555544333322221 233 6689999999999988765
No 17
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=97.42 E-value=0.043 Score=50.25 Aligned_cols=232 Identities=13% Similarity=0.032 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcc--C-CCC------------CC--ccc-ccchHHHHHHHHHHhhhhCCCcCc
Q 022382 16 VCALGAVLAKHAGDERLLDHYLTKFKEIK--L-PSD------------LP--NEL-LYGRVGFLWACSFLNKHMGKDTIS 77 (298)
Q Consensus 16 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~------------~~--~d~-~~G~aGil~~l~~l~~~~~~~~~~ 77 (298)
.++.++..+..++++++++.+.+.++-+. . +.+ .. ... +...+=++.++..+++.++++++.
T Consensus 58 ~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l 137 (384)
T cd00249 58 QVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEAR 137 (384)
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHH
Confidence 46677788999999998888877665431 1 111 01 111 334455677788899999998877
Q ss_pred HHHHHHHHHHHHHhcHhhhhcCCCCcceeec-Cccccc-cccchHHHHHHHhcCCC---CCchHHHHHHHHHHHHHccC-
Q 022382 78 TAQMRAVVDEIIKAGRRLANRGRCPLMYEWH-GKKYWG-AAHGLAGIMHVLMDMEL---KPDEVEDVKGTLRYMIKNRF- 151 (298)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~G-~aHG~aGi~~~L~~~~~---~~~~~~~i~~~l~~~~~~~~- 151 (298)
+.++++++.+.+... ...+..... ... +....+ -.|. =.+.+++.++. .+.+.+.+++.++.+.+...
T Consensus 138 -~~A~~~~~~l~~~~~-~~~g~~~~~--~~~~~~~~~~~~~~~--h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~~~ 211 (384)
T cd00249 138 -ALAEETIDLLERRFW-EDHPGAFDE--ADPGTPPYRGSNPHM--HLLEAMLAAYEATGEQKYLDRADEIADLILDRFID 211 (384)
T ss_pred -HHHHHHHHHHHHHhc-cCCCcccCC--CCCCCCCCCCCChhH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Confidence 477788887777643 111100000 000 011111 1122 01223444443 24467788888777665332
Q ss_pred -CCCCCCCCCCC------CCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCCC-Ccccc-c----
Q 022382 152 -PSGNYPSSEGS------ESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKR-VGICH-G---- 218 (298)
Q Consensus 152 -~~g~w~~~~~~------~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lCH-G---- 218 (298)
++|.++..... .......+-.+..=.+..++.+++.++++++.+.+++..+.+.+.+.... .+++. .
T Consensus 212 ~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~~~~~~~ 291 (384)
T cd00249 212 AESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDPERGGLYYSFLDDG 291 (384)
T ss_pred cccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCccCCCEEEeeECCC
Confidence 24433211100 00111122222223455677888889999999999999887766543111 12322 1
Q ss_pred ------------hhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 022382 219 ------------ISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA 253 (298)
Q Consensus 219 ------------~aG~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 253 (298)
.+=.+..++.+++.++|++|.+.+.++.+.+....
T Consensus 292 ~~~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~ 338 (384)
T cd00249 292 GLLEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRHF 338 (384)
T ss_pred CCcccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 11234446678899999999999988888777654
No 18
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=96.72 E-value=0.15 Score=48.98 Aligned_cols=219 Identities=16% Similarity=0.056 Sum_probs=126.2
Q ss_pred cCchH-HHHHHHHHHHHcCChHHHHHHHHHHhhc---cCC--------CCC--Cc-cc-------ccchHHHHHHHHHHh
Q 022382 11 CGRAG-VCALGAVLAKHAGDERLLDHYLTKFKEI---KLP--------SDL--PN-EL-------LYGRVGFLWACSFLN 68 (298)
Q Consensus 11 ~G~~G-i~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~--------~~~--~~-d~-------~~G~aGil~~l~~l~ 68 (298)
....| -+-.++..+..++|+++.+++.+.++.+ +.+ ... .. +. ..-..-++-+|+..+
T Consensus 59 ~~~~g~wl~a~a~~~~~~~D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~~ll~gl~~~y 138 (520)
T PF07944_consen 59 GHDVGKWLEAAAYAYAYTGDPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLGKLLEGLIDYY 138 (520)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHhHHHHHHHHHH
Confidence 34556 3444556677899999888888877765 111 111 00 11 223344777888999
Q ss_pred hhhCCCcCcHHHHHHHHHHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcCCCCCc---hHHHHHHHHHH
Q 022382 69 KHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPD---EVEDVKGTLRY 145 (298)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~---~~~~i~~~l~~ 145 (298)
+.+++++.+ +.+.+.++++.+....+... +. ..-..-|..|+..+|.++|+.+. +++.++..++
T Consensus 139 ~~tG~~~~L-~v~~k~ad~~~~~~~~~~~~---~~--------~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~- 205 (520)
T PF07944_consen 139 EATGNERAL-DVATKLADWVYRRLSRLGPE---PG--------QKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVD- 205 (520)
T ss_pred HHHCcHHHH-HHHHHHHHHHHHHhccCCHH---Hh--------hcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHH-
Confidence 999998876 47777888774332221110 10 00111244578899999997543 4555554332
Q ss_pred HHHccC-CC-CCC--CCCCCCCCCcccccccCc--hhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-c----------
Q 022382 146 MIKNRF-PS-GNY--PSSEGSESDRLVHWCHGA--PGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR-G---------- 208 (298)
Q Consensus 146 ~~~~~~-~~-g~w--~~~~~~~~~~~~~wChG~--~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------- 208 (298)
.+. .- +.+ .+.. ..........|.. .=..-+.+.+++.++|+++.+.+++..+.+.+. .
T Consensus 206 ---~~~~~~~~~~~~~d~~-~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~y~tGg~g~~~ 281 (520)
T PF07944_consen 206 ---QRGFDPYDLAYGQDHL-PGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHMYATGGIGSDH 281 (520)
T ss_pred ---HhCCCCCchhhcCccC-CCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCeeccCCCcCCC
Confidence 221 10 000 0000 0011122233332 111224577888899999999999988776543 1
Q ss_pred ----CC-----CC---CccccchhhHHHHHHHHHHHhCCHHHHHHHHHHH
Q 022382 209 ----LL-----KR---VGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFA 246 (298)
Q Consensus 209 ----~~-----~~---~~lCHG~aG~~~~l~~l~~~~~~~~~~~~~~~~~ 246 (298)
+. .+ .+=.|...+.+.+...+++.+||.+|.+..++.+
T Consensus 282 ~~E~f~~~~~lp~~~~~~EtCas~~~~~~~~~L~~~tgd~~yaD~~Er~l 331 (520)
T PF07944_consen 282 EGEHFGPPYDLPNRLAYAETCASVNMMKLARRLFRLTGDARYADYYERAL 331 (520)
T ss_pred CCccCCCCCCCCcCCCCccccHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 10 00 1335778888999999999999999998887653
No 19
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=96.66 E-value=0.033 Score=51.07 Aligned_cols=138 Identities=21% Similarity=0.167 Sum_probs=90.9
Q ss_pred ccchHHHHHHHhcCCCC---CchHHHHHHHHHHHHHccC-CC-CCCCCCCC-CCCCccccc-ccCchhHHHHHHHHHHHh
Q 022382 116 AHGLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRF-PS-GNYPSSEG-SESDRLVHW-CHGAPGVTLTLAKAAEVF 188 (298)
Q Consensus 116 aHG~aGi~~~L~~~~~~---~~~~~~i~~~l~~~~~~~~-~~-g~w~~~~~-~~~~~~~~w-ChG~~Gi~~~l~~~~~~~ 188 (298)
....+=.+++++.++.. ++.++.++++++++.++.. ++ |.|....+ +..+....- ++.-+=++.++..+++++
T Consensus 52 ~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at 131 (384)
T cd00249 52 LWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDGRPVDATKDLYSHAFALLAAAQAAKVG 131 (384)
T ss_pred EEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCCCCcccccchHHHHHHHHHHHHHHHhc
Confidence 44455677788877653 5578999999999997655 34 65543221 111111222 555566777888999999
Q ss_pred CcHHHHHHHHHHHHHHHHhcC------C----CCCccccchhhH---HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 022382 189 GEKEFLQAAVDAGEVVWKRGL------L----KRVGICHGISGN---TYVFLSLYRLTGNVEYLYRAKAFACFLYDRA 253 (298)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~------~----~~~~lCHG~aG~---~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 253 (298)
+++++.+.|+++.+.+.+.-. . .+..--++..+. +..++.++..++++.|.+.++++.+.+....
T Consensus 132 ~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd~~~~~~A~~l~~~~~~~~ 209 (384)
T cd00249 132 GDPEARALAEETIDLLERRFWEDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGEQKYLDRADEIADLILDRF 209 (384)
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 999999999998877654321 0 000111222222 4567888999999999999999888777765
No 20
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=96.41 E-value=0.091 Score=50.40 Aligned_cols=131 Identities=19% Similarity=0.252 Sum_probs=86.7
Q ss_pred ccccchHHHHHHHhcCCCCCchHHHHHHHHHHHHHccCCCCC---CCCCC--CCCCCccc----ccccCchhHHHHHHHH
Q 022382 114 GAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGN---YPSSE--GSESDRLV----HWCHGAPGVTLTLAKA 184 (298)
Q Consensus 114 G~aHG~aGi~~~L~~~~~~~~~~~~i~~~l~~~~~~~~~~g~---w~~~~--~~~~~~~~----~wChG~~Gi~~~l~~~ 184 (298)
.+.|=++|.++++.... .++..+.+.+.++.+.+.+.++|. ++... .....-.+ -||-| -++-+++..
T Consensus 61 ~~g~wl~a~a~~~~~~~-D~~l~~~~d~~V~~l~~~Q~~dGYl~~~~~~~~~~~~~~w~~~~he~Y~~~--~ll~gl~~~ 137 (520)
T PF07944_consen 61 DVGKWLEAAAYAYAYTG-DPELKAKADEIVDELAAAQQPDGYLGTYPEERNFNPDDRWAPDMHELYCLG--KLLEGLIDY 137 (520)
T ss_pred cHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhccCCceecccccccccccccCCCCCccceehHh--HHHHHHHHH
Confidence 34455677776665432 234557777888887765556774 33221 00111111 24433 355678889
Q ss_pred HHHhCcHHHHHHHHHHHHHHHHh--cCCC---CCccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 022382 185 AEVFGEKEFLQAAVDAGEVVWKR--GLLK---RVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFAC 247 (298)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~lCHG~aG~~~~l~~l~~~~~~~~~~~~~~~~~~ 247 (298)
++++++++..+.+.+..+.+.+. .+.. ...++.|..|+...+.++|+.|||++|++.|+++.+
T Consensus 138 y~~tG~~~~L~v~~k~ad~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LY~~Tgd~~yL~lA~~f~~ 205 (520)
T PF07944_consen 138 YEATGNERALDVATKLADWVYRRLSRLGPEPGQKMGYPEHGGINEALVRLYEITGDERYLDLAEYFVD 205 (520)
T ss_pred HHHHCcHHHHHHHHHHHHHHHHHhccCCHHHhhcccccccchHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999998877322 1211 245666888999999999999999999999887754
No 21
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=96.21 E-value=0.34 Score=43.03 Aligned_cols=228 Identities=18% Similarity=0.162 Sum_probs=123.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhhccCCCC-CCcccccch-HHHHHHHHHHhhhhCCCcCcHHHHHHHHHHHHHhcHhhh
Q 022382 19 LGAVLAKHAGDERLLDHYLTKFKEIKLPSD-LPNELLYGR-VGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLA 96 (298)
Q Consensus 19 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~G~-aGil~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 96 (298)
-+.++|+.|+|++|++...+.+++. +..+ -+.+.+... +| +.|+-+++.+++++|+ +.+.+.++.+.... +..
T Consensus 44 Gv~~~~eAT~d~~yl~~l~~~~d~~-i~~~g~~~~~id~i~~g--~~L~~L~e~T~~~~Yl-~~a~~~a~~l~~~~-Rt~ 118 (357)
T COG4225 44 GVARAYEATGDAEYLDYLKTWFDEQ-IDEGGLPPRNIDHIAAG--LTLLPLYEQTGDPRYL-EAAIKLASWLVHEP-RTK 118 (357)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhh-hccCCCCccchhhhccC--ceeeehhhhhCCHHHH-HHHHHHHHHHhhCc-ccC
Confidence 3456788999999999999998876 3333 233333332 33 3567888999999998 47788888887754 222
Q ss_pred hcCCCCcceeecCccccccccchHHHHHHHhcCCCCCchHHHHHHHH-HHHHHccC---C-CCC----CCCCC-----CC
Q 022382 97 NRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTL-RYMIKNRF---P-SGN----YPSSE-----GS 162 (298)
Q Consensus 97 ~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~i~~~l-~~~~~~~~---~-~g~----w~~~~-----~~ 162 (298)
++. .|.-.+...-=...|+---..+++++.+..+..+.+..++ ++.+..++ + .|- |.... ++
T Consensus 119 eG~----f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~~~~~w~~~ 194 (357)
T COG4225 119 EGG----FQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRDPETGLYYHGWDEDGTMPWANN 194 (357)
T ss_pred CCc----cccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccCCCcCceEEeeccCCCCccccc
Confidence 210 0000000000113344444578888877543333333333 23322222 1 232 32111 01
Q ss_pred CCCcccccccCchhHHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHH----hcC-----C----CCCccccchhhHHH
Q 022382 163 ESDRLVHWCHGAPGVTLTLAKAAEVFGEK-----EFLQAAVDAGEVVWK----RGL-----L----KRVGICHGISGNTY 224 (298)
Q Consensus 163 ~~~~~~~wChG~~Gi~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~----~~~-----~----~~~~lCHG~aG~~~ 224 (298)
.+....-|..|..=++.++..+.+.++++ .+.+..+..+..+.+ .|+ . .|.-=--|++|+++
T Consensus 195 ~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~Qde~GlW~tiLDd~~~~sy~EsSaSa~faY 274 (357)
T COG4225 195 ESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRYQDESGLWHTILDDGRPGSYLESSASAGFAY 274 (357)
T ss_pred cCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCCCchhhhHHHHHHH
Confidence 11112558888888888888888886642 233333333333322 122 1 12222458888888
Q ss_pred HHHHHHHH-hCCHHHHHHHHHHHHHHHHHHhh
Q 022382 225 VFLSLYRL-TGNVEYLYRAKAFACFLYDRAQK 255 (298)
Q Consensus 225 ~l~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~ 255 (298)
.+++--+. .-++++...+++..+-+++.+.+
T Consensus 275 allkgi~~G~l~~~~~~~~~kA~~aLl~~i~~ 306 (357)
T COG4225 275 ALLKGINLGILDPEYAPVAEKALDALLGHIDE 306 (357)
T ss_pred HHHHHHhcCCCCchhhHHHHHHHHHHHhhccc
Confidence 88764433 33567777777777777776543
No 22
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=96.03 E-value=0.15 Score=45.20 Aligned_cols=180 Identities=16% Similarity=0.117 Sum_probs=97.3
Q ss_pred HHHHHcCChHHHHHHHHHHhhcc----CCC------CCCcc--cccchHHHHHHHHHHhhhhCCCcCcHHHHHHHHHHHH
Q 022382 22 VLAKHAGDERLLDHYLTKFKEIK----LPS------DLPNE--LLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEII 89 (298)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~----~~~------~~~~d--~~~G~aGil~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 89 (298)
-+++.|+|++|++.+.+..+.+. .+. ...++ ...|+-=.++-+..+.+.++++++.++.+.+. .
T Consensus 90 ~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~~~~p~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF----~ 165 (357)
T COG4225 90 PLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHKVKYPHQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQF----S 165 (357)
T ss_pred ehhhhhCCHHHHHHHHHHHHHHhhCcccCCCccccccCchhHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHH----H
Confidence 46889999999999998877651 111 01111 33343222345677888888887665443332 2
Q ss_pred HhcHhhhhcCCCCccee-ec--C-----ccccc----cccchHHHHHHHhcCCCC-----Cc---hHHHHHHHHHHHHHc
Q 022382 90 KAGRRLANRGRCPLMYE-WH--G-----KKYWG----AAHGLAGIMHVLMDMELK-----PD---EVEDVKGTLRYMIKN 149 (298)
Q Consensus 90 ~~~~~~~~~~~~~~~~~-~~--~-----~~~~G----~aHG~aGi~~~L~~~~~~-----~~---~~~~i~~~l~~~~~~ 149 (298)
...+.+.+. ...+.|. |. + ....| .+.|++=+++++..+-.. ++ ..+.+...++-+++-
T Consensus 166 ~~~~~l~Dp-~TGL~YH~wd~~~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r~ 244 (357)
T COG4225 166 LHEKYLRDP-ETGLYYHGWDEDGTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIRY 244 (357)
T ss_pred HHHHHccCC-CcCceEEeeccCCCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHh
Confidence 222222211 1122221 21 1 11233 344444455555555431 22 234455555556543
Q ss_pred cCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHH
Q 022382 150 RFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEV-FGEKEFLQAAVDAGEVVWK 206 (298)
Q Consensus 150 ~~~~g~w~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 206 (298)
+-++|-|....++..+.+.-=..|++|+++++++..+. .-++++...++++++.+.+
T Consensus 245 Qde~GlW~tiLDd~~~~sy~EsSaSa~faYallkgi~~G~l~~~~~~~~~kA~~aLl~ 302 (357)
T COG4225 245 QDESGLWHTILDDGRPGSYLESSASAGFAYALLKGINLGILDPEYAPVAEKALDALLG 302 (357)
T ss_pred hccccchhhhhccCCCCCchhhhHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHh
Confidence 44788898765332122222367899999999986544 3367777888888776654
No 23
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=95.51 E-value=0.28 Score=42.96 Aligned_cols=132 Identities=12% Similarity=0.146 Sum_probs=81.4
Q ss_pred chHHHHHHHhcCCCC---CchHHHHHHHHHHHHHccCCCCCCCCCCCCCCC--cccccccC-chhHHHHHHHHHHHhC--
Q 022382 118 GLAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESD--RLVHWCHG-APGVTLTLAKAAEVFG-- 189 (298)
Q Consensus 118 G~aGi~~~L~~~~~~---~~~~~~i~~~l~~~~~~~~~~g~w~~~~~~~~~--~~~~wChG-~~Gi~~~l~~~~~~~~-- 189 (298)
+..--+-+|+++++. +.+.+.+.++++|+++.++++|.||...+.... ....+|.. ...++..|..+.+...
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~ 124 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPF 124 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCc
Confidence 345667788888764 347899999999999988899999865422111 11223333 4456666655554322
Q ss_pred -------cHHHHHHHHHHHHHHHHhc------------------C-------CCCCccccc-hhhHHHHHHHHHHHhCCH
Q 022382 190 -------EKEFLQAAVDAGEVVWKRG------------------L-------LKRVGICHG-ISGNTYVFLSLYRLTGNV 236 (298)
Q Consensus 190 -------~~~~~~~~~~~~~~~~~~~------------------~-------~~~~~lCHG-~aG~~~~l~~l~~~~~~~ 236 (298)
.++....++++++.+.+.. + ...+++|-+ ++|++.+|+.+. .+++
T Consensus 125 ~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~--~ps~ 202 (290)
T TIGR02474 125 DVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQP--NPSA 202 (290)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCC--CCCH
Confidence 1467777778777764421 0 013788855 568888877665 3456
Q ss_pred HHHHHHHHHHHHHHH
Q 022382 237 EYLYRAKAFACFLYD 251 (298)
Q Consensus 237 ~~~~~~~~~~~~~~~ 251 (298)
++++.++...+.+..
T Consensus 203 ~i~~ai~~A~~W~~~ 217 (290)
T TIGR02474 203 EIKEAIRAGVAWFDT 217 (290)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777666655444433
No 24
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=95.24 E-value=1.2 Score=40.17 Aligned_cols=209 Identities=14% Similarity=0.100 Sum_probs=108.0
Q ss_pred ccccchHHHHHHHHHHhhhhCCCcCcHHHHHHHHHHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHH-hcCC
Q 022382 52 ELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVL-MDME 130 (298)
Q Consensus 52 d~~~G~aGil~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L-~~~~ 130 (298)
+...|. ....+..+++.++|+++. +.+++.++.++..... . ..+-+=..|.+++. .+..
T Consensus 24 ~W~~G~--~~~gl~~~~~~tgd~~~~-~~a~~~~~~~~~~~~~-----~------------~~~d~~~~g~~~~~~y~~t 83 (336)
T PF07470_consen 24 DWTNGV--FWYGLLEAYEYTGDERYL-DYAERWADRFIEEDGS-----D------------YNLDDHDIGFLLLDLYERT 83 (336)
T ss_dssp SHHHHH--HHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHT-----T------------TSCCGTTHHHHHHHHHHHH
T ss_pred CcChhh--HHHHHHHHHHHHCCHHHH-HHHHHHHHHHHhccCC-----c------------cCCchhhhHHHHHHHHHHh
Confidence 555551 233345778889998876 4666667666654321 0 01111223444432 2222
Q ss_pred CCCchHHHHHHHHHHHHHccC--CCCC-CCCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Q 022382 131 LKPDEVEDVKGTLRYMIKNRF--PSGN-YPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR 207 (298)
Q Consensus 131 ~~~~~~~~i~~~l~~~~~~~~--~~g~-w~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (298)
..+++.+.+.+..+++++... ++|. |... .....-|+.+.-=..-.++.+.+.++|+++.+.|.+-++...+.
T Consensus 84 ~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~----~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a~~q~~~~~~~ 159 (336)
T PF07470_consen 84 GDEKYKDAAIQAADWLLARRPRTSDGGFWHNR----PYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEAVRQFRLTRKY 159 (336)
T ss_dssp -THHHHHHHHHHHHHHHHTSCBECTGCBECTT----TSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCCCCCCCccccCC----CCCCceeeccccccHHHHHHHHHHHCCcHHHHHHHHHHHHHHHh
Confidence 234577888888887876544 3454 4421 12345688887666777888899999999999887766555432
Q ss_pred ------cCC--------C----CCccccchhhHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhhhh-hcc-C---CC
Q 022382 208 ------GLL--------K----RVGICHGISGNTYVFLSLYRLTGN-VEYLYRAKAFACFLYDRAQKLI-AEG-K---MH 263 (298)
Q Consensus 208 ------~~~--------~----~~~lCHG~aG~~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~g-~---~~ 263 (298)
++. . +.+|.-|.+=.+.-+..+++.+++ ....+.....++.+.+...+.. ..| + +.
T Consensus 160 ~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~G~w~~~~~ 239 (336)
T PF07470_consen 160 LYDPETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDEDGLWYQDLD 239 (336)
T ss_dssp HB-TTTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTTSBEBSBTT
T ss_pred ccCCCCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCCCCcceecC
Confidence 221 0 123655555444555555566643 2223333333333333322211 122 1 11
Q ss_pred CCC-CccccccchHHHHHHHHH
Q 022382 264 GGD-RPYSLFEGIGGMTHLFLD 284 (298)
Q Consensus 264 ~~~-~~~gl~~G~sGi~~~Ll~ 284 (298)
.+. .++-=.+|.+.++++|++
T Consensus 240 ~~~~~~~~etSatA~~a~~l~~ 261 (336)
T PF07470_consen 240 DPDPGNYRETSATAMFAYGLLR 261 (336)
T ss_dssp TTTTTS-BEHHHHHHHHHHHHH
T ss_pred CCCCCCcccHHHHHHHHHHHHH
Confidence 111 233345678888888876
No 25
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=94.98 E-value=1.4 Score=39.62 Aligned_cols=182 Identities=15% Similarity=0.082 Sum_probs=90.7
Q ss_pred HHHHHHcCChHHHHHHHHHHhhc--cCCC--C---------CCcccccchHHHHHHHHHHhhhhCCCcCcHHHHHHHHHH
Q 022382 21 AVLAKHAGDERLLDHYLTKFKEI--KLPS--D---------LPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDE 87 (298)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~---------~~~d~~~G~aGil~~l~~l~~~~~~~~~~~~~~~~~~~~ 87 (298)
..+|+.++|+++.+.+.+.++.+ .... + ..--++.+.-=..-.|....+.++|+++.+.. .++
T Consensus 77 ~~~y~~t~d~~y~~~~~~~a~~~l~~~~~~~~G~~~~~~~~~~~~wiD~~~M~~p~l~~~~~~tgd~~~~~~a----~~q 152 (336)
T PF07470_consen 77 LDLYERTGDEKYKDAAIQAADWLLARRPRTSDGGFWHNRPYPNQVWIDGMYMNLPFLAWAGKLTGDPKYLDEA----VRQ 152 (336)
T ss_dssp HHHHHHH-THHHHHHHHHHHHHHHHTSCBECTGCBECTTTSTTEEETTHHHHHHHHHHHHHHHHTGHHHHHHH----HHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHhCCCCCCCccccCCCCCCceeeccccccHHHHHHHHHHHCCcHHHHHH----HHH
Confidence 44789999999998888888733 1111 0 11124555544556667778889988765433 333
Q ss_pred HHHhcHhhhhcCCCCcce-eec--Cccc---cccccchHHHHHHHhcCCC----C----CchHHHHHHHHHHHHHccCCC
Q 022382 88 IIKAGRRLANRGRCPLMY-EWH--GKKY---WGAAHGLAGIMHVLMDMEL----K----PDEVEDVKGTLRYMIKNRFPS 153 (298)
Q Consensus 88 l~~~~~~~~~~~~~~~~~-~~~--~~~~---~G~aHG~aGi~~~L~~~~~----~----~~~~~~i~~~l~~~~~~~~~~ 153 (298)
+....+.+-+. ...+.+ .+. +... ..-+-|.+=.++++...++ . ..+++.+++.++.+.+.+-++
T Consensus 153 ~~~~~~~~~d~-~tGl~~h~~~~~~~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~q~~~ 231 (336)
T PF07470_consen 153 FRLTRKYLYDP-ETGLYYHGYTYQGYADWSDSFWSRGNGWAIYGLAEVLEYLPEDHPERDELLEIAKKLADALARYQDED 231 (336)
T ss_dssp HHHHHHHHB-T-TTSSBESEEETTSSSTTST--BHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTSTTT
T ss_pred HHHHHHhccCC-CCCceeeccCCCCCcCcccccCcchhhHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHhcCCCC
Confidence 22222212111 111111 111 1110 1133343333333333332 1 123455556665654322357
Q ss_pred CCCCCCCCCCCCcccccccCchhHHHHHHHHHHH--hCcHHHHHHHHHHHHHHHHh
Q 022382 154 GNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEV--FGEKEFLQAAVDAGEVVWKR 207 (298)
Q Consensus 154 g~w~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~ 207 (298)
|.|+.......+...-=.-|++.++.++++.... ..++++.+.++++.+.+.++
T Consensus 232 G~w~~~~~~~~~~~~~etSatA~~a~~l~~gi~~g~~d~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 232 GLWYQDLDDPDPGNYRETSATAMFAYGLLRGIRLGLLDPEEYRPAAEKALEALLSN 287 (336)
T ss_dssp SBEBSBTTTTTTTS-BEHHHHHHHHHHHHHHHHTTSSTHHHHHHHHHHHHHHHHHC
T ss_pred CCcceecCCCCCCCcccHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHhC
Confidence 8776433211111222345677777777663322 44688999999999888776
No 26
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.51 Score=45.82 Aligned_cols=131 Identities=16% Similarity=0.216 Sum_probs=83.6
Q ss_pred HHHHHhcCCC---CCchHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHH
Q 022382 122 IMHVLMDMEL---KPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAV 198 (298)
Q Consensus 122 i~~~L~~~~~---~~~~~~~i~~~l~~~~~~~~~~g~w~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~ 198 (298)
++.+|+..+. .+++++.++++.+++.++.+.+ ..+...........+.-.==+=.+.+++.+++++.|.+|.+.|+
T Consensus 416 mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~-rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~ 494 (667)
T COG1331 416 MIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD-RLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAI 494 (667)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc-chheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHH
Confidence 4556776665 3557899999999998754422 21111000000011111111235678899999999999999998
Q ss_pred HHHHHHHH----h--cC-----------CC-----CCccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 022382 199 DAGEVVWK----R--GL-----------LK-----RVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA 253 (298)
Q Consensus 199 ~~~~~~~~----~--~~-----------~~-----~~~lCHG~aG~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 253 (298)
+..+.+.. . |+ .+ +...=-|.+=++..|+++...|++..|.+.|++..+......
T Consensus 495 ~L~~~~i~~f~d~~gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~ 571 (667)
T COG1331 495 ELADEAIADFWDDEGGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAFAGLA 571 (667)
T ss_pred HHHHHHHHHhcCCCCCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Confidence 87765532 1 21 11 233445668899999999999999999999988776555444
No 27
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=94.63 E-value=0.063 Score=46.94 Aligned_cols=129 Identities=19% Similarity=0.201 Sum_probs=74.1
Q ss_pred hHHHHHHHhcCCCC---CchHHHHHHHHHHHHHccCCCCCCCCCCCCCCC--cccccccCc-hhHHHHHHHHHHHhCcH-
Q 022382 119 LAGIMHVLMDMELK---PDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESD--RLVHWCHGA-PGVTLTLAKAAEVFGEK- 191 (298)
Q Consensus 119 ~aGi~~~L~~~~~~---~~~~~~i~~~l~~~~~~~~~~g~w~~~~~~~~~--~~~~wChG~-~Gi~~~l~~~~~~~~~~- 191 (298)
..--+-+|++++.. +.+.+.+.++++|+++.++++|.||...+.... ....+-.++ .+++..|..+.+..++.
T Consensus 41 T~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~ 120 (289)
T PF09492_consen 41 TTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFA 120 (289)
T ss_dssp THHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTST
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCcc
Confidence 45677888998863 347889999999999989999999864322111 112233333 35555566655544433
Q ss_pred --------HHHHHHHHHHHHHHHhcC-------------------------CCCCccccc-hhhHHHHHHHHHHHhCCHH
Q 022382 192 --------EFLQAAVDAGEVVWKRGL-------------------------LKRVGICHG-ISGNTYVFLSLYRLTGNVE 237 (298)
Q Consensus 192 --------~~~~~~~~~~~~~~~~~~-------------------------~~~~~lCHG-~aG~~~~l~~l~~~~~~~~ 237 (298)
+..+.++++++.+.+... ...+++|-+ ++|++.+|+.+.+-+ ++
T Consensus 121 ~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps--~~ 198 (289)
T PF09492_consen 121 FVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS--PE 198 (289)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS----HH
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC--HH
Confidence 566666666666644311 013888865 578888887776655 66
Q ss_pred HHHHHHHHHHHH
Q 022382 238 YLYRAKAFACFL 249 (298)
Q Consensus 238 ~~~~~~~~~~~~ 249 (298)
+++.++...+.+
T Consensus 199 v~~aI~~AvaWl 210 (289)
T PF09492_consen 199 VLAAIEAAVAWL 210 (289)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666655544433
No 28
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.72 Score=44.83 Aligned_cols=76 Identities=26% Similarity=0.316 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCCCCcccc----chh----------hHHHHHHHHHHHhCCHHHHHHH
Q 022382 177 VTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRVGICH----GIS----------GNTYVFLSLYRLTGNVEYLYRA 242 (298)
Q Consensus 177 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lCH----G~a----------G~~~~l~~l~~~~~~~~~~~~~ 242 (298)
++.+++.++.+++++++.+.|+++.+.+.++-. .+ .+|| |.+ =.+..++.+|+++++.+|++.|
T Consensus 416 mi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~-~~-rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A 493 (667)
T COG1331 416 MIAALAEAGRVLGDPEYLEAAERAADFILDNLY-VD-RLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKA 493 (667)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhc-cc-chheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 345688999999999999999999988876533 22 3444 333 3456788899999999999999
Q ss_pred HHHHHHHHHHHh
Q 022382 243 KAFACFLYDRAQ 254 (298)
Q Consensus 243 ~~~~~~~~~~~~ 254 (298)
.++.+.++....
T Consensus 494 ~~L~~~~i~~f~ 505 (667)
T COG1331 494 IELADEAIADFW 505 (667)
T ss_pred HHHHHHHHHHhc
Confidence 999888777654
No 29
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=93.91 E-value=5 Score=36.78 Aligned_cols=229 Identities=12% Similarity=0.088 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcc------CCC-CCCc-ccccchHHHHHHHHHHhhhhCCC-----cCcHHHHH
Q 022382 16 VCALGAVLAKHAGDERLLDHYLTKFKEIK------LPS-DLPN-ELLYGRVGFLWACSFLNKHMGKD-----TISTAQMR 82 (298)
Q Consensus 16 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~-d~~~G~aGil~~l~~l~~~~~~~-----~~~~~~~~ 82 (298)
+.-.+...++.++++++.+.+.+.+.... ... .... .+..=.+=.+++++..++.++++ +|+ +.++
T Consensus 41 ~~~~~~d~~~~t~d~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DD~aw~~la~l~aye~t~~~~~~~~~yL-~~A~ 119 (370)
T PF03663_consen 41 MLSALIDYYRRTGDPTYNDLIQNALLNQRGPNYDSYNPSNGSGDRYYDDNAWWALALLRAYELTGDQPSDNPKYL-DLAK 119 (370)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTSSS--S------BHHHHHHHHHHHHHHHHHH--H-----HHH-HHHH
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHHHHHhcccccccccccccccCccChHHHHHHHHHHHHHhhCCCcchHHHHH-HHHH
Confidence 45556667888999988877777665441 110 0011 13333444677889999999998 777 4777
Q ss_pred HHHHHHHHhcHhhhhcCCCCcceee----cCccc-cccccchHHHHHHHhcCCC---CCchHHHHHHHHHHHHH-ccC-C
Q 022382 83 AVVDEIIKAGRRLANRGRCPLMYEW----HGKKY-WGAAHGLAGIMHVLMDMEL---KPDEVEDVKGTLRYMIK-NRF-P 152 (298)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~-~G~aHG~aGi~~~L~~~~~---~~~~~~~i~~~l~~~~~-~~~-~ 152 (298)
++.+.+...-....- ..-+.|.. .+..+ .-.+.|. .+...+++++ ...+++.++++.+|+.+ ..+ +
T Consensus 120 ~i~~~~~~~wd~~~c--gGGi~W~~~~~~~~~~~Kna~sN~~--~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~ 195 (370)
T PF03663_consen 120 EIFDFLISGWDDTSC--GGGIWWSIDDTNSGYDYKNAISNGP--AAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLIDP 195 (370)
T ss_dssp HHHHHHHHTB-SGG---GS-BEEET----TEEEEEEHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--
T ss_pred HHHHHHHHhcCCccC--CCCccccccccCCCCCcccccchHH--HHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeEEC
Confidence 888777744321100 01122320 01111 2234443 3334444443 23488999999999987 333 2
Q ss_pred -CCCCCCCCCCC----CCcccccccCchhHH-HHHHHHHHHhCcH-HHHHHHHHHHHHHHHhcC------CCC-----Cc
Q 022382 153 -SGNYPSSEGSE----SDRLVHWCHGAPGVT-LTLAKAAEVFGEK-EFLQAAVDAGEVVWKRGL------LKR-----VG 214 (298)
Q Consensus 153 -~g~w~~~~~~~----~~~~~~wChG~~Gi~-~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~-----~~ 214 (298)
+|...+..... ......|-+ ..|+. -++..+++.|+++ .|++.+++.++.+.+.-+ +.. ..
T Consensus 196 ~~g~v~Dg~~~~~~c~~~~~~~~TY-NqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~~~~~~~gil~e~~ce~~~ 274 (370)
T PF03663_consen 196 STGLVYDGINIDGNCTNINKTKWTY-NQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINHFFDNGDGILTEEACEPSG 274 (370)
T ss_dssp TTS-B--EE-TTSSS-B-TT---HH-HHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHEETT--EE---------
T ss_pred CCcEEEeCCccCCCCCcCCCceech-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhCCCCCeeeeccccccCc
Confidence 24322221101 111223333 23444 4688999999877 999999999988866521 111 22
Q ss_pred cccchhhHH-----HHHHHHHHHhCC--HHHHHHHHHHHHHHH
Q 022382 215 ICHGISGNT-----YVFLSLYRLTGN--VEYLYRAKAFACFLY 250 (298)
Q Consensus 215 lCHG~aG~~-----~~l~~l~~~~~~--~~~~~~~~~~~~~~~ 250 (298)
-|++..+.. .-|..+.+..++ +.+.+....-++.+.
T Consensus 275 ~~~~d~~~Fkgi~~r~L~~l~~~~~~~~~~~~~~l~~~a~~a~ 317 (370)
T PF03663_consen 275 TCDGDQPLFKGIFARYLADLAQVAPDTADTYRDFLRKNADAAW 317 (370)
T ss_dssp -SSSGGGGHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHH
T ss_pred CcCCccHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHH
Confidence 377776632 222334455554 455555544444444
No 30
>PLN02993 lupeol synthase
Probab=93.48 E-value=1.2 Score=44.57 Aligned_cols=145 Identities=10% Similarity=0.017 Sum_probs=85.4
Q ss_pred cccccchHHHHHHHHHHhhhhCCC---cCcHHHHHHHHHHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHh
Q 022382 51 NELLYGRVGFLWACSFLNKHMGKD---TISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLM 127 (298)
Q Consensus 51 ~d~~~G~aGil~~l~~l~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~ 127 (298)
++....++-++-+|..+.+..++. ++ +..+.+.+++|.+.....+ +|.+.-...+..|.+-.+.+|.
T Consensus 560 ~~~~dcT~~vl~aL~~~~~~~p~~r~~ei-~~~i~rAv~yL~~~Q~~DG---------SW~G~Wgv~y~YgT~~aL~aL~ 629 (763)
T PLN02993 560 REYVECTSAVIQALVLFKQLYPDHRTKEI-IKSIEKAVQFIESKQTPDG---------SWYGNWGICFIYATWFALGGLA 629 (763)
T ss_pred CCCcCHHHHHHHHHHHhcccCcchhhhhH-HHHHHHHHHHHHHhcCCCC---------CcccccccccCcHHHHHHHHHH
Confidence 567778888888877765433321 12 2356667777766432211 1333223556668888888888
Q ss_pred cCCCCCchHHHHHHHHHHHHHccCCCCCCCCCCCCCCCccccccc--Cc----hhHHHHHHHHHHHhCcHHHHHHHHHHH
Q 022382 128 DMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCH--GA----PGVTLTLAKAAEVFGEKEFLQAAVDAG 201 (298)
Q Consensus 128 ~~~~~~~~~~~i~~~l~~~~~~~~~~g~w~~~~~~~~~~~~~wCh--G~----~Gi~~~l~~~~~~~~~~~~~~~~~~~~ 201 (298)
.+....+..+.++++++|+++.+.++|.|-.+-.. -....+.. |. ...++|++.+...-..++..+.+++++
T Consensus 630 a~G~~~~~~~~IrrAv~fLls~Q~~DGGWGEs~~S--~~~~~y~~~~~~~St~~qTAwAllaL~~aG~~~~~~~~l~Rgi 707 (763)
T PLN02993 630 AAGKTYNDCLAMRKGVHFLLTIQRDDGGWGESYLS--CPEQRYIPLEGNRSNLVQTAWAMMGLIHAGQAERDLIPLHRAA 707 (763)
T ss_pred HcCCCCCCcHHHHHHHHHHHHhcCCCCCcCcCcCc--CCCcccccCCCCCCchhhHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 77665444578899999999877788888643211 00111221 11 466667666665522333345667777
Q ss_pred HHHHHh
Q 022382 202 EVVWKR 207 (298)
Q Consensus 202 ~~~~~~ 207 (298)
+.+.++
T Consensus 708 ~~L~~~ 713 (763)
T PLN02993 708 KLIITS 713 (763)
T ss_pred HHHHhc
Confidence 777654
No 31
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=91.76 E-value=0.33 Score=43.90 Aligned_cols=130 Identities=22% Similarity=0.180 Sum_probs=77.3
Q ss_pred HHHHHhcCCC--CCchHHHHHHHHHHHHHccC--CCCCCCCCCCCCCC-cccccccCchhHHHHHHHHHHHhCcHHHHHH
Q 022382 122 IMHVLMDMEL--KPDEVEDVKGTLRYMIKNRF--PSGNYPSSEGSESD-RLVHWCHGAPGVTLTLAKAAEVFGEKEFLQA 196 (298)
Q Consensus 122 i~~~L~~~~~--~~~~~~~i~~~l~~~~~~~~--~~g~w~~~~~~~~~-~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~ 196 (298)
.++++++++. .+++++.++++++++.+... +.|.|-.......+ ....=++..+=+++++.. +..++++++.+.
T Consensus 26 ~~~~fa~a~~~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~~~~~~~~Y~~af~l~ala~-~~~tg~~~~~~~ 104 (346)
T PF07221_consen 26 QLYTFARAYRLGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGPLDPQKDLYDQAFALLALAE-ARATGDPEALEL 104 (346)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEEEE--EEHHHHHHHHHHHHH-HHCTT-TTHHHH
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCCCccccchHHHHHHHHHHHH-HHHhCChhHHHH
Confidence 5555555543 45678999999999997654 34555432211110 011123333344555566 566889999999
Q ss_pred HHHHHHHHHHhcCC-----------CCCccccchhh---HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 022382 197 AVDAGEVVWKRGLL-----------KRVGICHGISG---NTYVFLSLYRLTGNVEYLYRAKAFACFLYDR 252 (298)
Q Consensus 197 ~~~~~~~~~~~~~~-----------~~~~lCHG~aG---~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 252 (298)
|+++++.+.+.-.. .+.+.-.+..- ++..++.++++++++.|+++++++.+.+.+.
T Consensus 105 A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~~~~ 174 (346)
T PF07221_consen 105 AEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLFLDR 174 (346)
T ss_dssp HHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccccCcceeccCCccccCCCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 99988776543110 11111112222 3456677899999999999999988877643
No 32
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=90.82 E-value=6.5 Score=34.59 Aligned_cols=118 Identities=9% Similarity=-0.068 Sum_probs=69.3
Q ss_pred CchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC--------C-------CCCccccc-hhhHHHHHHHHHHHhC--
Q 022382 173 GAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGL--------L-------KRVGICHG-ISGNTYVFLSLYRLTG-- 234 (298)
Q Consensus 173 G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-------~~~~lCHG-~aG~~~~l~~l~~~~~-- 234 (298)
++.--+..|+.++..++++++.+.++++++.+..... . ...++|-. ...++.+|..+++..+
T Consensus 45 aT~~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~aQypnGGWPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~~~ 124 (290)
T TIGR02474 45 ATVTEIRYLAQVYQQEKNAKYRDAARKGIEYLLKAQYPNGGWPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKDPF 124 (290)
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhhCCCCCcCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccCCc
Confidence 3445666789999999999999999999999865311 1 12334433 5566666666665333
Q ss_pred ---C----HHHHHHHHHHHHHHHHHHhhh--hhccCCCCC------------CCccccccch-HHHHHHHHHccCCCC
Q 022382 235 ---N----VEYLYRAKAFACFLYDRAQKL--IAEGKMHGG------------DRPYSLFEGI-GGMTHLFLDMIEPSE 290 (298)
Q Consensus 235 ---~----~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~------------~~~~gl~~G~-sGi~~~Ll~~~~~~~ 290 (298)
+ ++....+.+..++++..-.+. +..+|...+ -+.+||..+. +||+.+|+++.+|+.
T Consensus 125 ~~~~~~~~~r~~~Ai~Rgid~ILktQ~~~gg~~t~Wg~Qyd~~tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps~ 202 (290)
T TIGR02474 125 DVFPDSTRTRAKTAVTKGIECILKTQVVQNGKLTVWCQQHDALTLQPKKARAYELPSLSSSESVGILLFLMTQPNPSA 202 (290)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhhcccCCcCCchhhccCccccccccccccCCcccccccHHHHHHHHhcCCCCCH
Confidence 2 233333444444444432110 111121111 1568888875 588889998877653
No 33
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=90.66 E-value=2.3 Score=38.98 Aligned_cols=72 Identities=28% Similarity=0.409 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhCcH-----HHHHHHHHHHHHHHHhcCCCCCccccc--------------------hhhHHHHHHHHHH
Q 022382 177 VTLTLAKAAEVFGEK-----EFLQAAVDAGEVVWKRGLLKRVGICHG--------------------ISGNTYVFLSLYR 231 (298)
Q Consensus 177 i~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~lCHG--------------------~aG~~~~l~~l~~ 231 (298)
++++++.++++++++ +|++.+++..+.++ .+. +...|.| ..--+.+..++++
T Consensus 93 ~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~-~~w--d~~~cgGGi~W~~~~~~~~~~~Kna~sN~~~~~laarL~~ 169 (370)
T PF03663_consen 93 WALALLRAYELTGDQPSDNPKYLDLAKEIFDFLI-SGW--DDTSCGGGIWWSIDDTNSGYDYKNAISNGPAAQLAARLYR 169 (370)
T ss_dssp HHHHHHHHHHHH--H-----HHHHHHHHHHHHHH-HTB---SGG-GS-BEEET----TEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHH-Hhc--CCccCCCCccccccccCCCCCcccccchHHHHHHHHHHHH
Confidence 778899999999999 99999999988776 332 2223333 2234556677899
Q ss_pred HhCCHHHHHHHHHHHHHHHH
Q 022382 232 LTGNVEYLYRAKAFACFLYD 251 (298)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~ 251 (298)
.|+++.|++.|+++.+.+.+
T Consensus 170 ~t~~~~Yl~~A~~~~~W~~~ 189 (370)
T PF03663_consen 170 ITGDQTYLDWAKKIYDWMRD 189 (370)
T ss_dssp HH--HHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHhhc
Confidence 99999999999998887777
No 34
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=89.78 E-value=2.5 Score=37.18 Aligned_cols=116 Identities=14% Similarity=0.080 Sum_probs=64.6
Q ss_pred chhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC---------------CCCccccc-hhhHHHHHHHHHHHhCCH-
Q 022382 174 APGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL---------------KRVGICHG-ISGNTYVFLSLYRLTGNV- 236 (298)
Q Consensus 174 ~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~lCHG-~aG~~~~l~~l~~~~~~~- 236 (298)
+.--+..|++++..++|++|.+.+.++++++.+..+. .-.++=.+ ...++.+|..+++..++-
T Consensus 41 T~~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~aQypnGGWPQ~yP~~~~Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~ 120 (289)
T PF09492_consen 41 TTTEIRFLARVYQATKDPRYREAFLKGLDYLLKAQYPNGGWPQFYPLRGGYHDHITFNDDAMVNVLELLRDVAEGKGDFA 120 (289)
T ss_dssp THHHHHHHHHHHHHCG-HHHHHHHHHHHHHHHHHS-TTS--BSECS--SGGGGSEE-GGGHHHHHHHHHHHHHCT-TTST
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCCCceEEccHHHHHHHHHHHHHHhhcCCcc
Confidence 3456667999999999999999999999999765321 01333333 345666666666665543
Q ss_pred ----HHHHHHHHHHHHHHHHHhhhh------hccCC---------CC---CCCccccccch-HHHHHHHHHccCCC
Q 022382 237 ----EYLYRAKAFACFLYDRAQKLI------AEGKM---------HG---GDRPYSLFEGI-GGMTHLFLDMIEPS 289 (298)
Q Consensus 237 ----~~~~~~~~~~~~~~~~~~~~~------~~g~~---------~~---~~~~~gl~~G~-sGi~~~Ll~~~~~~ 289 (298)
..++++...++.-++.+.+.. ..+|. |. .-+.+||..+. +||+.+|+++.+|+
T Consensus 121 ~v~~~~~~r~~~A~~kgi~ciL~tQi~~~g~~t~W~qQhD~~Tl~Pa~AR~yE~pSls~~ES~~iv~~LM~~~~ps 196 (289)
T PF09492_consen 121 FVDESLRARARAAVDKGIDCILKTQIRQNGKLTAWCQQHDEVTLQPAWARAYEPPSLSGSESVGIVRFLMSLPNPS 196 (289)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHS-EETTEE----SEE-TTT-SB---STT--SSEECCCHHHHHHHHCTSSS--
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHcccCCCCCchhhccCcccccccccccCCCcccccccHHHHHHHHhcCCCCC
Confidence 344444444333333322211 12221 11 11578888885 58999999988776
No 35
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.17 E-value=6.9 Score=36.88 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=84.0
Q ss_pred ccccccchHHHHHHHhcCCCCCchHHHHHHHHHHHHHccCCCCC---CCCCC-CCCCCcccccccCc--hhHHH-HHHHH
Q 022382 112 YWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGN---YPSSE-GSESDRLVHWCHGA--PGVTL-TLAKA 184 (298)
Q Consensus 112 ~~G~aHG~aGi~~~L~~~~~~~~~~~~i~~~l~~~~~~~~~~g~---w~~~~-~~~~~~~~~wChG~--~Gi~~-~l~~~ 184 (298)
..++.|=++-+++.|.+=. .+...+.+...++-+-+.+-++|. |.... +........|||=. +|-+. +....
T Consensus 65 dsdlgkwlea~A~~l~~~~-dp~Lekr~D~vi~~~a~~QdedGYl~~~~q~~~pe~Rw~nlr~~HelY~aghLieg~va~ 143 (589)
T COG3533 65 DSDLGKWLEAAAYSLANKG-DPELEKRIDEVVEELARAQDEDGYLGGWFQADFPEERWGNLRPNHELYCAGHLIEGGVAA 143 (589)
T ss_pred cccHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhhccCCcccceeeccCchhhhhccccchHHHHhHHHHhhhhHH
Confidence 3678888887777765432 122334455555444332334553 54332 11112346678762 23333 46666
Q ss_pred HHHhCcHHHHHHHHHHHHHHHHhcCC---CCCccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 022382 185 AEVFGEKEFLQAAVDAGEVVWKRGLL---KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFAC 247 (298)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~lCHG~aG~~~~l~~l~~~~~~~~~~~~~~~~~~ 247 (298)
+.+++..++.+.+.+..+.+.. .+. ..--.-+|-.++-+.+.++|+.||+++|++.|+++..
T Consensus 144 ~qaTGkr~lldV~~rlADhi~t-vfgp~~~q~~g~~gH~eielAl~~Ly~~Tg~~rYL~LA~~Fi~ 208 (589)
T COG3533 144 HQATGKRRLLDVVCRLADHIAT-VFGPEEDQVPGYCGHPEIELALAELYRLTGDQRYLDLARRFIH 208 (589)
T ss_pred HHhhCcchHHHHHHHHHHhhhh-hcCccccccccccCCCchhHHHHHHHHHhcChHHHHHHHHHHH
Confidence 7778999999988887776643 231 2344556888999999999999999999999988753
No 36
>PLN03012 Camelliol C synthase
Probab=87.82 E-value=9.5 Score=38.28 Aligned_cols=140 Identities=10% Similarity=0.016 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhhhhCCCc--CcHHHHHHHHHHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcCCCCCc
Q 022382 57 RVGFLWACSFLNKHMGKDT--ISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPD 134 (298)
Q Consensus 57 ~aGil~~l~~l~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~ 134 (298)
++-.+-+|..+.+..++.+ -.+..+.+.++.|.+.....+ +|.+.--.-+.+|.+-.+.+|..+.+...
T Consensus 566 Ta~~l~aL~~f~~~~~~~r~~~i~~~i~rAv~~L~~~Q~~DG---------sW~G~Wgv~y~YgT~~aL~aL~a~g~~~~ 636 (759)
T PLN03012 566 TSSAIQALILFKQLYPDHRTEEINAFIKKAAEYIENIQMLDG---------SWYGNWGICFTYGTWFALAGLAAAGKTFN 636 (759)
T ss_pred HHHHHHHHHHHhhhCcccchhhhHHHHHHHHHHHHHhcCCCC---------CCcccccccCCcHHHHHHHHHHHhCccCC
Confidence 6666666666554433211 012356667777766432211 13332234566788888888887766433
Q ss_pred hHHHHHHHHHHHHHccCCCCCCCCCCCCCCCccccccc--Cc----hhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Q 022382 135 EVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCH--GA----PGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR 207 (298)
Q Consensus 135 ~~~~i~~~l~~~~~~~~~~g~w~~~~~~~~~~~~~wCh--G~----~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (298)
.-+.|+++++|+++.+.++|.|..+-.. -....+.. |. ...++|+..+...-..++=...++++++.++++
T Consensus 637 ~~~~Irrav~fLls~Q~~DGGWGEs~~S--c~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~Ll~~ 713 (759)
T PLN03012 637 DCEAIRKGVHFLLAAQKDNGGWGESYLS--CPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLIINS 713 (759)
T ss_pred CcHHHHHHHHHHHHhcCCCCCcCCCCCC--CCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHc
Confidence 3478999999999888888988754211 01112222 22 456666666654421111113456666766653
No 37
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=86.03 E-value=23 Score=34.05 Aligned_cols=172 Identities=14% Similarity=0.133 Sum_probs=89.2
Q ss_pred HcCChHHHHHHHHHHhh-ccC--CCCCCcccccchHHHHHHHHHHhhhhCCCcCcHHHHHHHHHHHHHhcHhhhhcCCCC
Q 022382 26 HAGDERLLDHYLTKFKE-IKL--PSDLPNELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCP 102 (298)
Q Consensus 26 ~~~~~~~~~~~~~~~~~-~~~--~~~~~~d~~~G~aGil~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 102 (298)
+.|..+..+++.+.+.+ +.+ +.+...+++-=..=++=.|+..|..++++.++ +.+.++++.|+..... ....|
T Consensus 123 IMgl~~Ef~~a~~~V~~~l~f~~~~~~~vsvFEttIR~LGGLLSAy~Ls~d~~lL-~kA~dLgd~Ll~AFdT---ptgiP 198 (522)
T PTZ00470 123 IMGLKKEYKEGRDWVANNLKQSKDTGLGVSVFETTIRVLGGLLSAYDLTGDEMYL-EKAREIADRLLPAFNE---DTGFP 198 (522)
T ss_pred HcCChHHHHHHHHHHHhhCCCCCCCCCeeeeeeeehhhHhHHHHHHHHcCCHHHH-HHHHHHHHHHHHhhcC---CCCCC
Confidence 46887777888887764 444 32333444443333333445556667777666 4778899988876431 11233
Q ss_pred cce-eec-Cc-ccc---ccccchHHHHHH---HhcCCC---CCchHHHHHHHHHHHHHccCC-CCCCCCCCCCCCCcccc
Q 022382 103 LMY-EWH-GK-KYW---GAAHGLAGIMHV---LMDMEL---KPDEVEDVKGTLRYMIKNRFP-SGNYPSSEGSESDRLVH 169 (298)
Q Consensus 103 ~~~-~~~-~~-~~~---G~aHG~aGi~~~---L~~~~~---~~~~~~~i~~~l~~~~~~~~~-~g~w~~~~~~~~~~~~~ 169 (298)
..+ .+. +. ... +=....|.+... +.++.+ .+.+.+.++++.+.+.+.+-. .|-||...+. ....
T Consensus 199 ~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i~~~l~~~~~~~~GL~p~~i~~---~~g~ 275 (522)
T PTZ00470 199 ASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVMDALFSMKPAINGLYPIFLNP---DAGR 275 (522)
T ss_pred cceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhcCCCCCCccceEECC---ccCc
Confidence 211 111 00 001 111112333332 333333 244678888888777653333 5778764321 1234
Q ss_pred cccCchhHH-------HHHHHHHHHhC--cHHHHHHHHHHHHHH
Q 022382 170 WCHGAPGVT-------LTLAKAAEVFG--EKEFLQAAVDAGEVV 204 (298)
Q Consensus 170 wChG~~Gi~-------~~l~~~~~~~~--~~~~~~~~~~~~~~~ 204 (298)
|+.+..|+. -.+++.+..++ ++.+.+.-+++.+.+
T Consensus 276 ~~~~~~siGa~~DS~YEYLlK~~il~~~~d~~~~~~~~~a~~~i 319 (522)
T PTZ00470 276 FCGNHISLGALGDSYYEYLLKQWLYTNGREERYRRLFVESAKGI 319 (522)
T ss_pred cCCCceeecCCcchhHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 665555544 24666666664 666666555555444
No 38
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=86.01 E-value=5.7 Score=35.40 Aligned_cols=85 Identities=24% Similarity=0.314 Sum_probs=61.3
Q ss_pred cccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC------------------CCCCccccchhhHHHHHHHH
Q 022382 168 VHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGL------------------LKRVGICHGISGNTYVFLSL 229 (298)
Q Consensus 168 ~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~lCHG~aG~~~~l~~l 229 (298)
..=|-|+ +++-+..+...++++-+.+.++++++.+|++.. .++.+.--|.-.-...++++
T Consensus 183 ctac~gt--lilefaals~~tg~~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgigagidsyyey~lka 260 (587)
T KOG2430|consen 183 CTACAGT--LILEFAALSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGIGAGIDSYYEYLLKA 260 (587)
T ss_pred hhhccch--hhhhHHHHhhccCChhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccCcCcchHHHHHHHHHH
Confidence 3445554 344567777789999999999999999997521 02355555666667788888
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHHh
Q 022382 230 YRLTGNVEYLYRAKAFACFLYDRAQ 254 (298)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (298)
|-.+||+.|+++...-.+.+..++.
T Consensus 261 yillgddsfldrfn~hydai~ryi~ 285 (587)
T KOG2430|consen 261 YILLGDDSFLDRFNKHYDAIKRYIN 285 (587)
T ss_pred hheeccHHHHHHHHHHHHHHHHHhc
Confidence 9999999999988776666665543
No 39
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=79.67 E-value=25 Score=31.67 Aligned_cols=184 Identities=17% Similarity=0.195 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhhhhCCCcCcHHHHHHHHHHHHHhcHhhhhcCCCCcceee-cCc----cccccccchHHHHHHHhcCC--
Q 022382 58 VGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEW-HGK----KYWGAAHGLAGIMHVLMDME-- 130 (298)
Q Consensus 58 aGil~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~----~~~G~aHG~aGi~~~L~~~~-- 130 (298)
+=.++++...+. .+++.+. +.++..++.+.+....... ....+.. .+. ..-.+++-. ++++++.+.
T Consensus 24 ~R~~~~fa~a~~-~g~~~~l-~~A~~~~~fl~~~~~D~~~---Gg~~~~~~~~~~~~~~~~~Y~~af--~l~ala~~~~t 96 (346)
T PF07221_consen 24 ARQLYTFARAYR-LGRPEYL-ELAEHGFDFLRKHFRDPEY---GGWYRSLDDGGPLDPQKDLYDQAF--ALLALAEARAT 96 (346)
T ss_dssp HHHHHHHHHHHH-TTSHHHH-HHHHHHHHHHHHTTBTTTT---SSBSSEEETTEEEE--EEHHHHHH--HHHHHHHHHCT
T ss_pred HHHHHHHHHHHh-cCchhHH-HHHHHHHHHHHHhcccCCC---CCEEEEeCCCCCCccccchHHHHH--HHHHHHHHHHh
Confidence 335777777877 7777665 4677777777665431111 1111111 111 111222222 334444422
Q ss_pred CCCchHHHHHHHHHHHHHccC-C-CCCCCCCCCC-CCCcccccccCch---hHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Q 022382 131 LKPDEVEDVKGTLRYMIKNRF-P-SGNYPSSEGS-ESDRLVHWCHGAP---GVTLTLAKAAEVFGEKEFLQAAVDAGEVV 204 (298)
Q Consensus 131 ~~~~~~~~i~~~l~~~~~~~~-~-~g~w~~~~~~-~~~~~~~wChG~~---Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~ 204 (298)
..++.++.++++++.+.+... + .|.+....+. .... .+.. =++-+++.++++++++++.+.++++++.+
T Consensus 97 g~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~-----r~~n~~mhl~eA~l~l~~~~~~~~~~~~a~~l~~~~ 171 (346)
T PF07221_consen 97 GDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPP-----RGQNPHMHLLEAFLALYEATGDPRYLDRAEELLDLF 171 (346)
T ss_dssp T-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCB-----EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccC-----CCCChhHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 235678899999998876432 3 2333221111 1111 1111 12336777888999999999999988776
Q ss_pred HHh------cCC-----C------CCccccchhh----------HHHHHHHHH--HHhCCHHHHHHHHHHHHHHHHHH
Q 022382 205 WKR------GLL-----K------RVGICHGISG----------NTYVFLSLY--RLTGNVEYLYRAKAFACFLYDRA 253 (298)
Q Consensus 205 ~~~------~~~-----~------~~~lCHG~aG----------~~~~l~~l~--~~~~~~~~~~~~~~~~~~~~~~~ 253 (298)
..+ +.. . +....+..-| -+.+++.+. ...+++.+++.+.++........
T Consensus 172 ~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~~~~~~~~a~~l~~~~~~~G 249 (346)
T PF07221_consen 172 LDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRGDPDWLERARRLFDFALEHG 249 (346)
T ss_dssp HTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT-HTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhe
Confidence 532 110 0 0111111111 156666666 45677888888888777666654
No 40
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=77.06 E-value=2.5 Score=30.94 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=12.4
Q ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Q 022382 139 VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR 207 (298)
Q Consensus 139 i~~~l~~~~~~~~~~g~w~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (298)
|+++++|+++.+.++|.|..... +...+...++.+....+++.+.+.++++.+.+.+.
T Consensus 1 i~~~~~~l~~~Q~~dG~W~~~~~-----------~~~~~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~ 58 (109)
T PF13243_consen 1 IKRAAEWLLSQQNPDGSWGYNWG-----------SDVFVTAALILALAAAGDAAVDEAIKKAIDWLLSH 58 (109)
T ss_dssp ---------------------------------------------------TS-SSBSSHHHHHHHHH-
T ss_pred Ccccccccccccccccccccccc-----------ccccccccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 46788999987888999964311 22222223333333345667888888888877654
No 41
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=76.87 E-value=17 Score=34.88 Aligned_cols=75 Identities=17% Similarity=0.172 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHHHHh-----cCC-----------CC-----CccccchhhHH-HHHHHHHHHhCC
Q 022382 178 TLTLAKAAEVFGEKEFLQAAVDAGEVVWKR-----GLL-----------KR-----VGICHGISGNT-YVFLSLYRLTGN 235 (298)
Q Consensus 178 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~-----------~~-----~~lCHG~aG~~-~~l~~l~~~~~~ 235 (298)
+=.|+.++..++|+.+++.|+...+.+... +.. .. .+-|=..+|.+ +=+..|++.|||
T Consensus 161 LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g~~~~~~~~~~~~~lAe~gSl~LEF~~LS~lTGd 240 (522)
T PTZ00470 161 LGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATGRKSYPGWAGGCSILSEVGTLQLEFNYLSEITGD 240 (522)
T ss_pred HhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccCCCCCcccCCCccchhhhhhHHHHHHHHHHhhCC
Confidence 446788888899999999999988776431 110 01 11122222222 225678999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 022382 236 VEYLYRAKAFACFLYDR 252 (298)
Q Consensus 236 ~~~~~~~~~~~~~~~~~ 252 (298)
++|.+.++++.+.+.+.
T Consensus 241 ~kY~~~a~~i~~~l~~~ 257 (522)
T PTZ00470 241 PKYAEYVDKVMDALFSM 257 (522)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999988777654
No 42
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=76.01 E-value=21 Score=31.93 Aligned_cols=58 Identities=22% Similarity=0.221 Sum_probs=34.2
Q ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCCcccccccCchhHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhc
Q 022382 139 VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHGAPGVTLTLAKAAEVFGE-KEFLQAAVDAGEVVWKRG 208 (298)
Q Consensus 139 i~~~l~~~~~~~~~~g~w~~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 208 (298)
|+++++|+.+++.++|.|+... .........+.+....+. +++.+.++++++.+.+..
T Consensus 1 ~~~~~~~L~~~Q~~dG~W~~~~------------~~~~~Ta~~~~al~~~g~~~~~~~~~~ka~~~l~~~q 59 (348)
T cd02889 1 IRRALDFLLSLQAPDGHWPGEY------------SQVWDTALALQALLEAGLAPEFDPALKKALEWLLKSQ 59 (348)
T ss_pred CchHHHHHHHhccCCCCccccC------------CchHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHhcC
Confidence 3568899998777888887531 112222222222222333 567788888888776654
No 43
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=75.83 E-value=63 Score=31.99 Aligned_cols=140 Identities=18% Similarity=0.076 Sum_probs=68.8
Q ss_pred cccchHHHHHHHHHHhhhhCC---CcCcHHHHHHHHHHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcC
Q 022382 53 LLYGRVGFLWACSFLNKHMGK---DTISTAQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDM 129 (298)
Q Consensus 53 ~~~G~aGil~~l~~l~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~ 129 (298)
.+..++-++.+|..+.+..++ +++ ...+.+.++.|.+..... .. |.+.-...+.+|.+=.+.+|..+
T Consensus 449 ~~d~Ta~~l~aL~~~~~~~~~~~~~~i-~~ai~rav~~L~~~Q~~d---Gs------W~g~Wg~~~~Y~T~~al~aL~~~ 518 (634)
T TIGR03463 449 YVECTSSCLQALAAWRKHHPHVPDGRI-TRAISRGVRFLRSRQRED---GS------FPGSWGVCFTYGTFHGVMGLRAA 518 (634)
T ss_pred cCcHHHHHHHHHHHHhhcCcchhhhHH-HHHHHHHHHHHHHhcCCC---CC------ccccCCCCCcHHHHHHHHHHHHc
Confidence 555666666666665433321 111 234566677766543211 11 11110123445665556666554
Q ss_pred CCCCchHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccccC----chhHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Q 022382 130 ELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHG----APGVTLTLAKAAEVFGEKEFLQAAVDAGEVVW 205 (298)
Q Consensus 130 ~~~~~~~~~i~~~l~~~~~~~~~~g~w~~~~~~~~~~~~~wChG----~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 205 (298)
....+ .+.++++++|+++.+.++|.|...... .....+..| ....+.++..+... +.. -.+.++++++.+.
T Consensus 519 G~~~~-~~~i~rA~~~Ll~~Q~~DGgWg~~~~s--~~~~~y~~~~~S~~~~TA~Al~aL~~~-g~~-~~~~i~rgi~~L~ 593 (634)
T TIGR03463 519 GASPD-DMALQRAAAWLRSYQRADGGWGEVYES--CLQARYVEGKQSQAVMTSWALLALAEA-GEG-GHDAVQRGVAWLR 593 (634)
T ss_pred CCCcC-cHHHHHHHHHHHHccCCCCCccCccCc--cccccccCCCCCcHHHHHHHHHHHHHc-CCc-CCHHHHHHHHHHH
Confidence 43322 367888999999877788988643211 000111122 23455555555443 211 1334566666665
Q ss_pred Hh
Q 022382 206 KR 207 (298)
Q Consensus 206 ~~ 207 (298)
++
T Consensus 594 ~~ 595 (634)
T TIGR03463 594 SR 595 (634)
T ss_pred Hh
Confidence 43
No 44
>PLN03012 Camelliol C synthase
Probab=75.29 E-value=67 Score=32.44 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=59.8
Q ss_pred cccccchHHHHHHHHHHhhhhCCCcCcHHHHHHHHHHHHHhcHhhhhcCCCCccee-ecCccccccc---cchHHHHHHH
Q 022382 51 NELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYE-WHGKKYWGAA---HGLAGIMHVL 126 (298)
Q Consensus 51 ~d~~~G~aGil~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~G~a---HG~aGi~~~L 126 (298)
..+.+|++-.+.+|..+.+...+. ..+++.++.|++.....+ .+...+. .....+.+.- .=....++|+
T Consensus 615 v~y~YgT~~aL~aL~a~g~~~~~~----~~Irrav~fLls~Q~~DG---GWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl 687 (759)
T PLN03012 615 ICFTYGTWFALAGLAAAGKTFNDC----EAIRKGVHFLLAAQKDNG---GWGESYLSCPKKIYIAQEGEISNLVQTAWAL 687 (759)
T ss_pred ccCCcHHHHHHHHHHHhCccCCCc----HHHHHHHHHHHHhcCCCC---CcCCCCCCCCCccccCCCCCCCcHHHHHHHH
Confidence 567778888888887765433321 477889999987643221 1111110 0112233322 1135666666
Q ss_pred hcCCC---CCchHHHHHHHHHHHHHccCCCCCCCCC
Q 022382 127 MDMEL---KPDEVEDVKGTLRYMIKNRFPSGNYPSS 159 (298)
Q Consensus 127 ~~~~~---~~~~~~~i~~~l~~~~~~~~~~g~w~~~ 159 (298)
+-+-. .....+.++++++++++.+.++|.|+..
T Consensus 688 ~aLi~ag~~~~~~~~i~Rg~~~Ll~~Q~~dG~W~q~ 723 (759)
T PLN03012 688 MGLIHAGQAERDPIPLHRAAKLIINSQLENGDFPQQ 723 (759)
T ss_pred HHHHHcCCCCCCcHHHHHHHHHHHHcccCCCCCCCc
Confidence 65532 2223357899999999877789999864
No 45
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=74.15 E-value=6.9 Score=32.19 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=31.3
Q ss_pred cccccccCch-hHHH-HHHHHHHHhCcHHHHHHHHHHHHHH
Q 022382 166 RLVHWCHGAP-GVTL-TLAKAAEVFGEKEFLQAAVDAGEVV 204 (298)
Q Consensus 166 ~~~~wChG~~-Gi~~-~l~~~~~~~~~~~~~~~~~~~~~~~ 204 (298)
..++|--+.+ |.++ ++.+++..|+|++|.+.|+++++..
T Consensus 22 l~~gW~SamaQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f 62 (189)
T PF06662_consen 22 LSPGWYSAMAQGQAISVLARAYQLTGDEKYLDAAKKALNSF 62 (189)
T ss_pred CCCCcHhHHHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHh
Confidence 4577877766 5555 4889999999999999999998754
No 46
>PLN02993 lupeol synthase
Probab=73.87 E-value=58 Score=32.92 Aligned_cols=102 Identities=14% Similarity=0.173 Sum_probs=57.1
Q ss_pred cccccchHHHHHHHHHHhhhhCCCcCcHHHHHHHHHHHHHhcHhhhhcCCCCccee-ecCccccccc--cc-hHHHHHHH
Q 022382 51 NELLYGRVGFLWACSFLNKHMGKDTISTAQMRAVVDEIIKAGRRLANRGRCPLMYE-WHGKKYWGAA--HG-LAGIMHVL 126 (298)
Q Consensus 51 ~d~~~G~aGil~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~G~a--HG-~aGi~~~L 126 (298)
..+..|++-.+.+|....+...+ . ..+++.++.|++.....+ .+...+. -.+..+.+.- +. ..+.++++
T Consensus 615 v~y~YgT~~aL~aL~a~G~~~~~---~-~~IrrAv~fLls~Q~~DG---GWGEs~~S~~~~~y~~~~~~~St~~qTAwAl 687 (763)
T PLN02993 615 ICFIYATWFALGGLAAAGKTYND---C-LAMRKGVHFLLTIQRDDG---GWGESYLSCPEQRYIPLEGNRSNLVQTAWAM 687 (763)
T ss_pred cccCcHHHHHHHHHHHcCCCCCC---c-HHHHHHHHHHHHhcCCCC---CcCcCcCcCCCcccccCCCCCCchhhHHHHH
Confidence 56777888888777655433222 1 367889999987643211 1111110 0111233211 11 24555555
Q ss_pred hcCC---CCCchHHHHHHHHHHHHHccCCCCCCCCC
Q 022382 127 MDME---LKPDEVEDVKGTLRYMIKNRFPSGNYPSS 159 (298)
Q Consensus 127 ~~~~---~~~~~~~~i~~~l~~~~~~~~~~g~w~~~ 159 (298)
+.+. ......+.++++++++++.+.++|.|+..
T Consensus 688 laL~~aG~~~~~~~~l~Rgi~~L~~~Q~~~G~W~q~ 723 (763)
T PLN02993 688 MGLIHAGQAERDLIPLHRAAKLIITSQLENGDFPQQ 723 (763)
T ss_pred HHHHHcCCCCCCcHHHHHHHHHHHhccCCCCCCCCc
Confidence 5443 22233467889999999877788999864
No 47
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=68.50 E-value=33 Score=28.26 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=29.2
Q ss_pred cceeecCchH--HHHHHHHHHHHcCChHHHHHHHHHHhhc
Q 022382 6 RVTFICGRAG--VCALGAVLAKHAGDERLLDHYLTKFKEI 43 (298)
Q Consensus 6 ~~sl~~G~~G--i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 43 (298)
+.+-+++++- .+.++.++|++|+|++|++.|.+.++..
T Consensus 23 ~~gW~SamaQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f 62 (189)
T PF06662_consen 23 SPGWYSAMAQGQAISVLARAYQLTGDEKYLDAAKKALNSF 62 (189)
T ss_pred CCCcHhHHHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHh
Confidence 3445566664 3677788999999999999999987754
No 48
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.89 E-value=21 Score=33.79 Aligned_cols=57 Identities=18% Similarity=0.114 Sum_probs=45.0
Q ss_pred HHHHHcCChHHHHHHHHHHhhcc--CC-CCCCcccccchHHHHHHHHHHhhhhCCCcCcH
Q 022382 22 VLAKHAGDERLLDHYLTKFKEIK--LP-SDLPNELLYGRVGFLWACSFLNKHMGKDTIST 78 (298)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~d~~~G~aGil~~l~~l~~~~~~~~~~~ 78 (298)
..++.||.+..++.+.+.++.+. +. .....-...|-.+|=++|..+++.+++++|.+
T Consensus 142 a~~qaTGkr~lldV~~rlADhi~tvfgp~~~q~~g~~gH~eielAl~~Ly~~Tg~~rYL~ 201 (589)
T COG3533 142 AAHQATGKRRLLDVVCRLADHIATVFGPEEDQVPGYCGHPEIELALAELYRLTGDQRYLD 201 (589)
T ss_pred HHHHhhCcchHHHHHHHHHHhhhhhcCccccccccccCCCchhHHHHHHHHHhcChHHHH
Confidence 35788999999888888888762 21 22345677889999999999999999999873
No 49
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=62.92 E-value=63 Score=29.68 Aligned_cols=85 Identities=12% Similarity=0.093 Sum_probs=56.4
Q ss_pred ccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCCCC----ccccchhh--------------HHHHHHHHH
Q 022382 169 HWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLLKRV----GICHGISG--------------NTYVFLSLY 230 (298)
Q Consensus 169 ~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~lCHG~aG--------------~~~~l~~l~ 230 (298)
+=..|..=|+++|+.+.+..++++|.++++..++.++++.....+ -|==|..| +..++..++
T Consensus 113 sASDGDl~IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~~~~~~~~NPSY~~p~~~~~fa 192 (376)
T PRK11097 113 SASDADLWIAYSLLEAGRLWKEPRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFADDGSWRLNPSYLPPQLLRRFA 192 (376)
T ss_pred CCChHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhcccccCCCceeeccccccccCCCCCeECcccccHHHHHHHH
Confidence 345667779999999999999999999999998888765321111 11111111 345566677
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHH
Q 022382 231 RLTGNVEYLYRAKAFACFLYDRA 253 (298)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~ 253 (298)
+.++++.|.+.++.-.+.+.+..
T Consensus 193 ~~~~~~~W~~l~~~~~~lL~~~a 215 (376)
T PRK11097 193 RFLPGGPWAALAATNARLLLETA 215 (376)
T ss_pred HhcCCchHHHHHHHHHHHHHHhc
Confidence 88888888777666555554443
No 50
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=61.20 E-value=1.2e+02 Score=30.07 Aligned_cols=40 Identities=13% Similarity=0.274 Sum_probs=28.5
Q ss_pred hHHHHHHHhcCCC--CCchHHHHHHHHHHHHHccCCCCCCCC
Q 022382 119 LAGIMHVLMDMEL--KPDEVEDVKGTLRYMIKNRFPSGNYPS 158 (298)
Q Consensus 119 ~aGi~~~L~~~~~--~~~~~~~i~~~l~~~~~~~~~~g~w~~ 158 (298)
.+-++.+|..... .+...+.++++++|+++.+.++|.|..
T Consensus 383 Ta~~L~AL~~~~~~~~~~~~~~i~ra~~wLl~~Qn~dGgw~a 424 (635)
T TIGR01507 383 TAVVVWALNGLRLPDERRRRDAMTKAFRWIAGMQSSNGGWGA 424 (635)
T ss_pred HHHHHHHHHHcCCCccccchHHHHHHHHHHHHhcCCCCCEec
Confidence 4556777766632 223457899999999987778898864
No 51
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=60.54 E-value=1.2e+02 Score=30.00 Aligned_cols=78 Identities=12% Similarity=0.142 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhcHhhhhcCCCCcceee-cCccccccc-cchHHHHHHHhcCCCC-CchHHHHHHHHHHHHHccCCCCC
Q 022382 79 AQMRAVVDEIIKAGRRLANRGRCPLMYEW-HGKKYWGAA-HGLAGIMHVLMDMELK-PDEVEDVKGTLRYMIKNRFPSGN 155 (298)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~G~a-HG~aGi~~~L~~~~~~-~~~~~~i~~~l~~~~~~~~~~g~ 155 (298)
..+++.+++|++..... ..+...+.. ....+.+-. .-..+.++++..+... ....+.++++++|+++.+.++|.
T Consensus 525 ~~i~rA~~~Ll~~Q~~D---GgWg~~~~s~~~~~y~~~~~S~~~~TA~Al~aL~~~g~~~~~~i~rgi~~L~~~Q~~dG~ 601 (634)
T TIGR03463 525 MALQRAAAWLRSYQRAD---GGWGEVYESCLQARYVEGKQSQAVMTSWALLALAEAGEGGHDAVQRGVAWLRSRQQEDGR 601 (634)
T ss_pred HHHHHHHHHHHHccCCC---CCccCccCccccccccCCCCCcHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhCCCCCC
Confidence 46788889988753321 111111100 001122211 1145666666666432 12245788999999987778999
Q ss_pred CCCC
Q 022382 156 YPSS 159 (298)
Q Consensus 156 w~~~ 159 (298)
|+..
T Consensus 602 W~~~ 605 (634)
T TIGR03463 602 WPRE 605 (634)
T ss_pred CCCC
Confidence 9864
No 52
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=60.48 E-value=1.8e+02 Score=28.83 Aligned_cols=117 Identities=12% Similarity=0.134 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcCCCCCchHHHHHHHHHHHHHccCCCCCCCC
Q 022382 79 AQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPS 158 (298)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~i~~~l~~~~~~~~~~g~w~~ 158 (298)
..+++.+++|.+...+.+ . |.+.-...+.+|.+-.+.+|...... ...+.++++++|+++.+.++|.|..
T Consensus 471 ~~i~rav~~L~~~Q~~dG---~------W~g~wg~~~~Y~T~~al~aL~~~g~~-~~~~~i~rAv~wL~~~Q~~DGGWge 540 (635)
T TIGR01507 471 PVIERAVEYLKREQEPDG---S------WFGRWGVNYLYGTGAVLSALKAVGID-TREPYIQKALAWLESHQNPDGGWGE 540 (635)
T ss_pred HHHHHHHHHHHHccCCCC---C------CccCCCCccccHHHHHHHHHHHcCCC-cccHHHHHHHHHHHHhcCCCCCCCC
Confidence 467788888877532211 1 11111123455665566666655433 2246788999999987778898864
Q ss_pred CCCC-CCCcccccccC-chhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Q 022382 159 SEGS-ESDRLVHWCHG-APGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR 207 (298)
Q Consensus 159 ~~~~-~~~~~~~wChG-~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (298)
.... ..+...+-..+ .+..+.++..+...-..+ .+.++++++.+.+.
T Consensus 541 ~~~sy~~~~~~g~g~s~~s~TA~AL~AL~~ag~~~--~~~I~rav~~L~~~ 589 (635)
T TIGR01507 541 DCRSYEDPAYAGKGASTASQTAWALIALIAAGRAE--SEAARRGVQYLVET 589 (635)
T ss_pred CCcccccccccCCCCCcHHHHHHHHHHHHHhCCCC--cHHHHHHHHHHHHh
Confidence 3111 11111121111 224455555555442211 24566777776643
No 53
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family.; InterPro: IPR001330 The beta subunit of the farnesyltransferases is responsible for peptide binding. Squalene-hopene cyclase is a bacterial enzyme that catalyzes the cyclization of squalene into hopene, a key step in hopanoid (triterpenoid) metabolism []. Lanosterol synthase (5.4.99.7 from EC) (oxidosqualene-lanosterol cyclase) catalyzes the cyclization of (S)-2,3-epoxysqualene to lanosterol, the initial precursor of cholesterol, steroid hormones and vitamin D in vertebrates and of ergosterol in fungi []. Cycloartenol synthase () (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ....
Probab=59.05 E-value=5.5 Score=24.03 Aligned_cols=33 Identities=27% Similarity=0.661 Sum_probs=20.5
Q ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCCcccccc
Q 022382 139 VKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWC 171 (298)
Q Consensus 139 i~~~l~~~~~~~~~~g~w~~~~~~~~~~~~~wC 171 (298)
++++.+|+++.+.++|.|....+...+...+||
T Consensus 3 ~~~~~~~l~~~Q~~dGGf~~~~~~~~d~~~t~~ 35 (44)
T PF00432_consen 3 VEKLIRFLLSCQNPDGGFGGRPGGESDTCYTYC 35 (44)
T ss_dssp HHHHHHHHHHTBBTTSSBBSSTTSSBBHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCChHHHHH
Confidence 567888998877688888655422223344444
No 54
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=58.40 E-value=41 Score=32.28 Aligned_cols=76 Identities=24% Similarity=0.271 Sum_probs=55.6
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHhc----CC-------------CCCccccchhhHHHHHHHHHHHhCCHHHHHHH
Q 022382 180 TLAKAAEVFGEKEFLQAAVDAGEVVWKRG----LL-------------KRVGICHGISGNTYVFLSLYRLTGNVEYLYRA 242 (298)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------------~~~~lCHG~aG~~~~l~~l~~~~~~~~~~~~~ 242 (298)
-+-.+...++|++|...|++|++.+|+.- +. .+.++=-|.=.-...+++.|-.++|+++++..
T Consensus 204 EFg~LSrLTGD~~fE~vA~~A~~~lW~~RS~igLlGn~idV~tG~W~~~~sGIGAgiDSfyEYllK~yILfgd~e~lemf 283 (622)
T KOG2429|consen 204 EFGTLSRLTGDPKFEKVARRALDALWSLRSGIGLLGNHIDVQTGEWTAPDSGIGAGIDSFYEYLLKGYILFGDPELLEMF 283 (622)
T ss_pred ehhhhHHhhCCcHHHHHHHHHHHHHHhhcCCCCcccceeeccccceeccccccccchHHHHHHHHHHheecCCHHHHHHH
Confidence 35566677999999999999999999752 11 23455555555566677777779999999988
Q ss_pred HHHHHHHHHHHhh
Q 022382 243 KAFACFLYDRAQK 255 (298)
Q Consensus 243 ~~~~~~~~~~~~~ 255 (298)
.+..+.+..+.++
T Consensus 284 ~ea~~ai~~y~r~ 296 (622)
T KOG2429|consen 284 NEAYEAIQKYTRK 296 (622)
T ss_pred HHHHHHHHHHhhc
Confidence 8777767666654
No 55
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=56.68 E-value=2.1e+02 Score=28.32 Aligned_cols=118 Identities=13% Similarity=0.162 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcHhhhhcCCCCcceeecCccccccccchHHHHHHHhcCCCCCchHHHHHHHHHHHHHccCCCCCCCC
Q 022382 79 AQMRAVVDEIIKAGRRLANRGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPS 158 (298)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~G~aHG~aGi~~~L~~~~~~~~~~~~i~~~l~~~~~~~~~~g~w~~ 158 (298)
+.+++.+++|.+..++.. . |.+.-...+..|.+=.+.+|..+.+.....+.++++++|+++.+.++|.|..
T Consensus 460 ~~i~rAl~~L~~~Q~~DG---s------w~g~wg~~y~YgT~~al~aL~~~G~~~~~~~~i~rA~~~L~~~Q~~DGGWge 530 (621)
T TIGR01787 460 NVLERALEYLRREQRADG---S------WFGRWGVNYTYGTGFVLSALAAAGRTYRNCPEVQKACDWLLSRQMPDGGWGE 530 (621)
T ss_pred HHHHHHHHHHHHhcCCCC---C------CcccCCCCCchhHHHHHHHHHHhCCcccCCHHHHHHHHHHHhhcCCCCCCCc
Confidence 467777777776532211 1 1111112344455545556666654322237888999999987778888853
Q ss_pred CCCC-CCCccccccc-CchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Q 022382 159 SEGS-ESDRLVHWCH-GAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR 207 (298)
Q Consensus 159 ~~~~-~~~~~~~wCh-G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (298)
.... ..+....-.. -.+-.++++..+... ++.. .+.++++++.+.+.
T Consensus 531 ~~~s~~~~~y~~~~~S~~s~Ta~AL~AL~~a-g~~~-~~ai~rgv~~L~~~ 579 (621)
T TIGR01787 531 DCFSYEDPSYVGSGGSTPSQTGWALMALIAA-GEAD-SEAIERGVKYLLET 579 (621)
T ss_pred CCccccccccCCCCCCCHHHHHHHHHHHHHc-Cccc-hHHHHHHHHHHHHh
Confidence 3211 1111111011 122344455544433 2221 23577787877653
No 56
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=48.59 E-value=2.8e+02 Score=27.44 Aligned_cols=39 Identities=13% Similarity=0.327 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCC-----chHHHHHHHHHHHHHccCCCCCCCC
Q 022382 120 AGIMHVLMDMELKP-----DEVEDVKGTLRYMIKNRFPSGNYPS 158 (298)
Q Consensus 120 aGi~~~L~~~~~~~-----~~~~~i~~~l~~~~~~~~~~g~w~~ 158 (298)
+-++.+|+.+...+ ...+.++++++|+++.+.++|.|..
T Consensus 378 a~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~~Qn~dGgf~~ 421 (634)
T cd02892 378 AEALKALLRLQELPPFGEKVSRERLYDAVDWLLGMQNSNGGFAA 421 (634)
T ss_pred HHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHhccCCCCCEee
Confidence 55666776665432 2457899999999987667787753
No 57
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=47.51 E-value=2.8e+02 Score=26.99 Aligned_cols=120 Identities=13% Similarity=0.081 Sum_probs=71.5
Q ss_pred CCchHHHHHHHHHHHHHccCCCC--CC-C----CCC--CCCCCcccccccCch----hHHHHHHHHHHHhCcHHHHHHHH
Q 022382 132 KPDEVEDVKGTLRYMIKNRFPSG--NY-P----SSE--GSESDRLVHWCHGAP----GVTLTLAKAAEVFGEKEFLQAAV 198 (298)
Q Consensus 132 ~~~~~~~i~~~l~~~~~~~~~~g--~w-~----~~~--~~~~~~~~~wChG~~----Gi~~~l~~~~~~~~~~~~~~~~~ 198 (298)
.+.+.+.++..++++-+..++.+ .. + +.. .......++|..|.. =++-+++.+|+..++.++.+.|.
T Consensus 524 ~~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~~~~~~FldDYAFlI~gLLDlYea~~~~e~LkwA~ 603 (786)
T KOG2244|consen 524 EPEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRPSKAPAFLDDYAFLISGLLDLYEAGGGIEWLKWAI 603 (786)
T ss_pred CHHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceeccCCccccchhhhhHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34677888888887765444211 11 1 000 011223455654443 45667899999999999999987
Q ss_pred HHHHHHHHhcCC----------------------CCCccccchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 022382 199 DAGEVVWKRGLL----------------------KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDR 252 (298)
Q Consensus 199 ~~~~~~~~~~~~----------------------~~~~lCHG~aG~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 252 (298)
+..+.. .+-|+ .+-.==.|.+=-..=|++++..++.+.|++.|.++....-++
T Consensus 604 ~LQdtq-dklFWdgggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~e~yl~ka~~ll~~fseR 678 (786)
T KOG2244|consen 604 KLQDTQ-DKLFWDGGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAAESYLNKAHRLLAVFSER 678 (786)
T ss_pred HHHHHH-HHheecCCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 764332 22111 011112355555566788899999999999998876654443
No 58
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=46.61 E-value=1.1e+02 Score=29.05 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC------------CCCccccchhhHHHHHHHHHHHhCCHHHHHHHH
Q 022382 176 GVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL------------KRVGICHGISGNTYVFLSLYRLTGNVEYLYRAK 243 (298)
Q Consensus 176 Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~lCHG~aG~~~~l~~l~~~~~~~~~~~~~~ 243 (298)
-.+++++.++...+|+.+.+.+...+.. .++. ...+-|+ ..=.+..++.+++.++++.|++.|+
T Consensus 388 ~yll~~vra~~~s~D~~Lw~~~~~m~~~---~gLGdig~~~~~~~~~~~~~~~~-sp~~L~allEL~~atq~~~~l~lA~ 463 (557)
T PF06917_consen 388 DYLLPYVRAYRLSRDPELWDLARTMAHH---FGLGDIGNAAGKEPRVNMQTDNA-SPYLLFALLELYQATQDARYLELAD 463 (557)
T ss_dssp HHHHHHHHHHHHS--HHHHHHHHHHHHH---TT-EE-TTBTTBS-EE-TT------HHHHHHHHHHHHHH--HHHHHHHH
T ss_pred hHhHHHHHHHHcCCCHHHHHHHHHHHhh---cCcccccCccccccccccCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3567788888888899988888766542 1210 1111122 2335677889999999999999999
Q ss_pred HHHHHHHHHHhhhhhccCC-CCCCCc-cccccchHHHHHHHHHccCCCCCCCCCC
Q 022382 244 AFACFLYDRAQKLIAEGKM-HGGDRP-YSLFEGIGGMTHLFLDMIEPSEARFPAY 296 (298)
Q Consensus 244 ~~~~~~~~~~~~~~~~g~~-~~~~~~-~gl~~G~sGi~~~Ll~~~~~~~~~~~~~ 296 (298)
++.+.++++.-. .|-+ ++.... ..+=.=..=.+++|...++.....+|.+
T Consensus 464 ~~g~~l~~~~~~---~GlF~~~~~h~y~r~Dd~~PlALL~L~Aa~~gk~~~vp~y 515 (557)
T PF06917_consen 464 QVGENLFEQHFH---RGLFVASPRHRYARLDDPEPLALLALIAALRGKPAQVPPY 515 (557)
T ss_dssp HHHHHHHHHHEE---TTEE-SSTTBSSEETT-SHHHHHHHHHHHHTT-GGGS---
T ss_pred HHHHHHHHHHcc---CceecCChhhceeccCChhhHHHHHHHHHhcCChhhcchh
Confidence 999988886432 2211 111111 1121222234555666666666666654
No 59
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=45.70 E-value=88 Score=30.14 Aligned_cols=72 Identities=26% Similarity=0.284 Sum_probs=50.9
Q ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHh----------------cCCCCCccccchhhHHH-------HHHHHHHHhCCH
Q 022382 180 TLAKAAEVFGEKEFLQAAVDAGEVVWKR----------------GLLKRVGICHGISGNTY-------VFLSLYRLTGNV 236 (298)
Q Consensus 180 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~lCHG~aG~~~-------~l~~l~~~~~~~ 236 (298)
.++.++..++|+-+.+.+.+..+.+... |..+|.+|--|...|+. -+..+.+.+++|
T Consensus 270 Gllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG~~~n~~wasgg~SILaE~gtlhlef~~LS~ltg~P 349 (625)
T KOG2204|consen 270 GLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSGDADNYGWASGGSSILAEFGTLHLEFSYLSKLTGNP 349 (625)
T ss_pred hhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccCccCCcccccCcchHhhhcCceeeehHHhhhccCCc
Confidence 4566677788999999998887766321 11247889988766652 346678889999
Q ss_pred HHHHHHHHHHHHHHH
Q 022382 237 EYLYRAKAFACFLYD 251 (298)
Q Consensus 237 ~~~~~~~~~~~~~~~ 251 (298)
.|.+++..+.+.+..
T Consensus 350 ~~~ekv~~IRk~l~k 364 (625)
T KOG2204|consen 350 TFAEKVVKIRKVLNK 364 (625)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999988776544433
No 60
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=43.92 E-value=50 Score=31.14 Aligned_cols=75 Identities=21% Similarity=0.222 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHh--CcHHHHHHHHHHHHHHHH---h--cCC-------C-------CCccc-cchhhHHHHHHHHHHHhC
Q 022382 177 VTLTLAKAAEVF--GEKEFLQAAVDAGEVVWK---R--GLL-------K-------RVGIC-HGISGNTYVFLSLYRLTG 234 (298)
Q Consensus 177 i~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~---~--~~~-------~-------~~~lC-HG~aG~~~~l~~l~~~~~ 234 (298)
++=.|+.++..+ +|+.+.+.|++..+.+.. . +.. . +..-| +.......=+.++++.||
T Consensus 82 ~lGgLLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTg 161 (452)
T PF01532_consen 82 VLGGLLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTG 161 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS
T ss_pred hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhh
Confidence 555788888888 899999999998887632 1 110 0 00123 333333444577899999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 022382 235 NVEYLYRAKAFACFLYD 251 (298)
Q Consensus 235 ~~~~~~~~~~~~~~~~~ 251 (298)
|++|.+.+.++.+.+.+
T Consensus 162 d~kY~~~a~~~~~~l~~ 178 (452)
T PF01532_consen 162 DPKYFDAADRIYDALWR 178 (452)
T ss_dssp -THHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999988877766
No 61
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=40.42 E-value=2.7e+02 Score=24.78 Aligned_cols=81 Identities=15% Similarity=0.179 Sum_probs=43.8
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHHccC--------------CCCCCCCCCCCCCCccccccc--CchhHHHHHHHHH
Q 022382 122 IMHVLMDMELKPDEVEDVKGTLRYMIKNRF--------------PSGNYPSSEGSESDRLVHWCH--GAPGVTLTLAKAA 185 (298)
Q Consensus 122 i~~~L~~~~~~~~~~~~i~~~l~~~~~~~~--------------~~g~w~~~~~~~~~~~~~wCh--G~~Gi~~~l~~~~ 185 (298)
++.+|......+++.+.++++++|+.+.+. ++|.|+-.. ...+|.. -++-++.++..+.
T Consensus 31 ~~~al~~~g~~~~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~-----~~~~~~~~~~Ta~~l~al~~~~ 105 (348)
T cd02889 31 ALQALLEAGLAPEFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFST-----ANQGYPDSDDTAEALKALLRLQ 105 (348)
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccC-----cCCCCCCCCChHHHHHHHHHhh
Confidence 333443444335667889999999998662 233343211 0012222 2334555566555
Q ss_pred HHhC--cHHHHHHHHHHHHHHHHh
Q 022382 186 EVFG--EKEFLQAAVDAGEVVWKR 207 (298)
Q Consensus 186 ~~~~--~~~~~~~~~~~~~~~~~~ 207 (298)
+..+ ++...+.++++++.+.+.
T Consensus 106 ~~~~~~~~~~~~~i~~a~~~L~~~ 129 (348)
T cd02889 106 KKPPDGKKVSRERLYDAVDWLLSM 129 (348)
T ss_pred ccCcccchhhHHHHHHHHHHHHHh
Confidence 5432 355677777777777653
No 62
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=40.07 E-value=44 Score=30.72 Aligned_cols=65 Identities=17% Similarity=0.289 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHccCCCCCCCCCCCC-----CCCcccccccCch-hHHH-HHHHHHHHhCcHHHHHHHHHHHH
Q 022382 138 DVKGTLRYMIKNRFPSGNYPSSEGS-----ESDRLVHWCHGAP-GVTL-TLAKAAEVFGEKEFLQAAVDAGE 202 (298)
Q Consensus 138 ~i~~~l~~~~~~~~~~g~w~~~~~~-----~~~~~~~wChG~~-Gi~~-~l~~~~~~~~~~~~~~~~~~~~~ 202 (298)
.--.+.+|+.+++-+.|.|+.+... ...-.++|-.-.+ |-++ .+.+++..++|++|...|.++++
T Consensus 381 aFyaAadWlV~NQd~kGGW~~pV~Rsl~egf~~L~PGW~SAMaQGhaISvL~RAy~h~~De~yL~sAa~al~ 452 (594)
T KOG3760|consen 381 AFYAAADWLVKNQDDKGGWSVPVERSLAEGFLVLPPGWHSAMAQGHAISVLTRAYKHFNDEKYLKSAAKALK 452 (594)
T ss_pred HHHHHHHHHhhCCCCCCCCcchhhhhhhcCccccCcchHhhhhcccchHHHHHHHHhcCcHHHHHHHHhhcC
Confidence 3445678998877777889865321 1223577854333 3333 47888888999999999988764
No 63
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=39.83 E-value=1.5e+02 Score=27.65 Aligned_cols=86 Identities=24% Similarity=0.204 Sum_probs=61.0
Q ss_pred cccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh---cC-------------CCCCccccchhhHHHH------
Q 022382 168 VHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKR---GL-------------LKRVGICHGISGNTYV------ 225 (298)
Q Consensus 168 ~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------~~~~~lCHG~aG~~~~------ 225 (298)
++.-.-+.=|+-.++.++..++++-+.+.|....+.+... .. ..++-|- |.+....+
T Consensus 171 VNlFEtTIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~-~~SStaEvttiQlE 249 (546)
T KOG2431|consen 171 VNLFETTIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWT-GDSSTAEVTTIQLE 249 (546)
T ss_pred eehhhhhHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCC-Cccchhhheeeeee
Confidence 4455556667777888898899999999888877665431 10 0124443 66666654
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Q 022382 226 FLSLYRLTGNVEYLYRAKAFACFLYDRAQ 254 (298)
Q Consensus 226 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (298)
+..+.+.|||++|.+.+.+..+++.....
T Consensus 250 fr~Ls~ltgd~kY~~~a~kv~ehih~~~~ 278 (546)
T KOG2431|consen 250 FRYLSRLTGDPKYEELAEKVTEHIHGLGK 278 (546)
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHhccCc
Confidence 57889999999999999999888876543
No 64
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=39.08 E-value=4e+02 Score=26.41 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=43.1
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHHHHccC--CCCCCCCCCCCCCCcccccccC-----------chhHHHHHHHHHHHhC
Q 022382 123 MHVLMDMELKPDEVEDVKGTLRYMIKNRF--PSGNYPSSEGSESDRLVHWCHG-----------APGVTLTLAKAAEVFG 189 (298)
Q Consensus 123 ~~~L~~~~~~~~~~~~i~~~l~~~~~~~~--~~g~w~~~~~~~~~~~~~wChG-----------~~Gi~~~l~~~~~~~~ 189 (298)
+.+|......++..+.++++++|+.+.+. ..|.|...... ....+|... ++-++.++..+.+..+
T Consensus 315 ~~AL~~ag~~~~~~~~l~ka~~wL~~~Q~~~~~gdw~~~~~~--~~~GGW~fs~~~~~~pd~d~Ta~~l~AL~~~~~~~~ 392 (634)
T cd02892 315 VQALLEAGLAPEFDPALKKALDWLLESQILDNPGDWKVKYRH--LRKGGWAFSTANQGYPDSDDTAEALKALLRLQELPP 392 (634)
T ss_pred HHHHHHcCCCccchHHHHHHHHHHHHHHcCCCCCchhhhCCC--CCCCCCCCCCCCCCCCCcCchHHHHHHHHHhhccCC
Confidence 34444444333566788999999988664 34555432110 011233221 2334445555444322
Q ss_pred --cHHHHHHHHHHHHHHHH
Q 022382 190 --EKEFLQAAVDAGEVVWK 206 (298)
Q Consensus 190 --~~~~~~~~~~~~~~~~~ 206 (298)
++...+.++++++.+..
T Consensus 393 ~~~~~~~~~i~~Av~wLl~ 411 (634)
T cd02892 393 FGEKVSRERLYDAVDWLLG 411 (634)
T ss_pred cchhhHHHHHHHHHHHHHh
Confidence 34566777888887764
No 65
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=35.05 E-value=1.2e+02 Score=28.86 Aligned_cols=75 Identities=11% Similarity=-0.013 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhc---cCCC----CCCcccccch--HHHHHHHHHHhhhhCCCcCcHHHHHHHHH
Q 022382 16 VCALGAVLAKHAGDERLLDHYLTKFKEI---KLPS----DLPNELLYGR--VGFLWACSFLNKHMGKDTISTAQMRAVVD 86 (298)
Q Consensus 16 i~~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~~~d~~~G~--aGil~~l~~l~~~~~~~~~~~~~~~~~~~ 86 (298)
.++.+...|.+.+|+..-+.+..+++.. .+.+ ....+..... +=.+++++.+++.++++++. +.+.++++
T Consensus 389 yll~~vra~~~s~D~~Lw~~~~~m~~~~gLGdig~~~~~~~~~~~~~~~~sp~~L~allEL~~atq~~~~l-~lA~~~g~ 467 (557)
T PF06917_consen 389 YLLPYVRAYRLSRDPELWDLARTMAHHFGLGDIGNAAGKEPRVNMQTDNASPYLLFALLELYQATQDARYL-ELADQVGE 467 (557)
T ss_dssp HHHHHHHHHHHS--HHHHHHHHHHHHHTT-EE-TTBTTBS-EE-TT-----HHHHHHHHHHHHHH--HHHH-HHHHHHHH
T ss_pred HhHHHHHHHHcCCCHHHHHHHHHHHhhcCcccccCccccccccccCCCCCCHHHHHHHHHHHHHhCCHHHH-HHHHHHHH
Confidence 4566677889999998888888877654 1111 1112222232 34588899999999998887 58888999
Q ss_pred HHHHh
Q 022382 87 EIIKA 91 (298)
Q Consensus 87 ~l~~~ 91 (298)
.|+++
T Consensus 468 ~l~~~ 472 (557)
T PF06917_consen 468 NLFEQ 472 (557)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88875
No 66
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=34.67 E-value=3.7e+02 Score=24.81 Aligned_cols=133 Identities=20% Similarity=0.163 Sum_probs=80.3
Q ss_pred hHHHHHHHhcCCC---CCchHHHHHHHHHHHHHccC-CCCCCCCCC-CC-CCCcccccccCchhHHHHHHHHHHHhCcH-
Q 022382 119 LAGIMHVLMDMEL---KPDEVEDVKGTLRYMIKNRF-PSGNYPSSE-GS-ESDRLVHWCHGAPGVTLTLAKAAEVFGEK- 191 (298)
Q Consensus 119 ~aGi~~~L~~~~~---~~~~~~~i~~~l~~~~~~~~-~~g~w~~~~-~~-~~~~~~~wChG~~Gi~~~l~~~~~~~~~~- 191 (298)
.+=.++.++.++. +++..+.+...++|+.+... ++|.|-.-. .+ +....+.=|++-+=+++++..+....++.
T Consensus 57 ~~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~~~~~R~~~gg~~~~~~~dg~~~Dat~d~Y~haFallA~A~~a~a~~~~a 136 (388)
T COG2942 57 QARQVYCFAVAGLLGWRGPWLDAVAHGIAYLARVGRDPEGGWYFALDNDGGPVDATKDLYGHAFALLAAAHAATAGPPRA 136 (388)
T ss_pred ehhHHHHHHHHHHhcCCccHHHHHHhHHHHHHhcCcCCCCCeEEEecCCCCcccccHhHHHHHHHHHHHHHHHhcCChhH
Confidence 4456666666653 45688999999999986544 455543211 11 11123456777777788877766554433
Q ss_pred -HHHHHHHHHHHHHHH-hc--C-------CCCCccccch---hhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 022382 192 -EFLQAAVDAGEVVWK-RG--L-------LKRVGICHGI---SGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRA 253 (298)
Q Consensus 192 -~~~~~~~~~~~~~~~-~~--~-------~~~~~lCHG~---aG~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 253 (298)
+..+.+-.+++.... .. + ..+..+ |. .=+...++-.+..+++..|.+++.++++.++.+.
T Consensus 137 ~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~pl--~sNp~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf 210 (388)
T COG2942 137 DELLDEALDVLERRFWREEHPLGGFEEDNPGSAPL--GSNPHMHLLEAMLAAYEATGEKTWLDRADRIADLIISRF 210 (388)
T ss_pred HHHHHHHHHHHHHHHhhhcCCcccccccCCCCCcc--CCCcchHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHh
Confidence 455555555554432 21 1 011222 22 2355667778899999999999999998777654
No 67
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=33.72 E-value=60 Score=30.63 Aligned_cols=230 Identities=16% Similarity=0.170 Sum_probs=114.6
Q ss_pred HHHHHHHc--CChHHHHHHHHHHhhc--cCCC--CCC---cc--------------cccchHHHHHHHHHHhhhhCCCcC
Q 022382 20 GAVLAKHA--GDERLLDHYLTKFKEI--KLPS--DLP---NE--------------LLYGRVGFLWACSFLNKHMGKDTI 76 (298)
Q Consensus 20 l~~~~~~~--~~~~~~~~~~~~~~~~--~~~~--~~~---~d--------------~~~G~aGil~~l~~l~~~~~~~~~ 76 (298)
+...|+++ +|+.+++.|.+..+.+ .+++ ..+ .+ .+...+...+=+..+.+.+++++|
T Consensus 86 LLSay~ls~~~d~~lL~kA~~lad~Ll~aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTgd~kY 165 (452)
T PF01532_consen 86 LLSAYDLSGEGDPILLSKAVELADRLLPAFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTGDPKY 165 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS-THH
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHHHHhccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhhccHH
Confidence 34457778 8999999999988865 1111 000 11 122333445667889999999998
Q ss_pred cHHHHHHHHHHHHHhcHhhhhcCCCCcceeec-C---ccccccccchHHHHHHHhcCCC-C----CchHHHHHHHHHHHH
Q 022382 77 STAQMRAVVDEIIKAGRRLANRGRCPLMYEWH-G---KKYWGAAHGLAGIMHVLMDMEL-K----PDEVEDVKGTLRYMI 147 (298)
Q Consensus 77 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~---~~~~G~aHG~aGi~~~L~~~~~-~----~~~~~~i~~~l~~~~ 147 (298)
. +.+.++.+.+.+...........|..+... + ....++.-|.-..-=.|++.+. . ..+.+.-+++++-+.
T Consensus 166 ~-~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~g~~~~~~~~~Ga~~DS~YEYLlK~~lL~g~~d~~~~~~~~~a~~~i~ 244 (452)
T PF01532_consen 166 F-DAADRIYDALWRSQNRSKIPGLFPNFIDPSTGKWTSSSISLGAGGDSFYEYLLKMYLLLGGTDEQYRDMYDEAVDAIK 244 (452)
T ss_dssp H-HHHHHHHHHHHCCCCCHSBTTB-BSEEETTTS-BSSTEE-SSTTTHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHhhhccCCcccCcceecCCcCcccccccccCCCcchHHHhhhhhhhhcCccchHHHHHHHHHHHHHH
Confidence 7 477777766655321000011122211101 0 1234555555444445555542 1 123444455555444
Q ss_pred HccC-----CC--C-CCCCCCC--CCC---Cc-ccccccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHH---Hh---
Q 022382 148 KNRF-----PS--G-NYPSSEG--SES---DR-LVHWCHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVW---KR--- 207 (298)
Q Consensus 148 ~~~~-----~~--g-~w~~~~~--~~~---~~-~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~--- 207 (298)
+... +. + .|..... ... .. .+-=|- .+|+.. ...+..+++++.+.|++..+... +.
T Consensus 245 ~~Ll~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~hLsCF-~pG~l~---Lg~~~~~~~~~~~~A~~l~~~C~~~y~~~~t 320 (452)
T PF01532_consen 245 KHLLFRPSTPGDYDLLFLGEYSTGGGGRLSPKMDHLSCF-LPGMLA---LGAKLFNDEGDLELAEELTETCYWLYKSTPT 320 (452)
T ss_dssp HHTEEEBTTTT--T-EEE-EEETTTTTEEESEEECGGGG-HHHHHH---HHHHTTTCHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHhhccCCCCCccceeEeeeeecccCccccccccchhhc-chhHHH---HhhcccCchhHHHHHHHHHHHHHHHHHhccc
Confidence 3211 11 1 1111100 000 01 111233 445433 23334567888888887766543 32
Q ss_pred cCCC---CCcccc----------------------chhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh
Q 022382 208 GLLK---RVGICH----------------------GISGNTYVFLSLYRLTGNVEYLYRAKAFACFLYDRAQ 254 (298)
Q Consensus 208 ~~~~---~~~lCH----------------------G~aG~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (298)
++.. +..-|. -..=.+..+-.+++.|||++|++.+.++++.+....+
T Consensus 321 Gl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if~ai~k~~r 392 (452)
T PF01532_consen 321 GLGPEIFSFDPCEENCQWDEERKDFMIKISDPRYLLRPETIESLFYLYRATGDPKYREWGWDIFQAIEKYCR 392 (452)
T ss_dssp SS--SEEEESCSCG--TEETGGCSCCHHGGG--B-S--HHHHHHHHHHHHH-BHHHHHHHHHHHHHHHHHTE
T ss_pred CCCceEEEeeccccccccchhhcccccccccccccchhhhhhheeEEEEEcCCchHHHHHHHHHHHHHHhcc
Confidence 2321 112221 1224567888899999999999999998887777664
No 68
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=28.67 E-value=32 Score=28.42 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=15.2
Q ss_pred CcccccccCchhHHHHHHHH
Q 022382 165 DRLVHWCHGAPGVTLTLAKA 184 (298)
Q Consensus 165 ~~~~~wChG~~Gi~~~l~~~ 184 (298)
+.+.+||+|.+=.+-.+...
T Consensus 9 DPmCgWCyGa~Pll~~l~~~ 28 (212)
T COG3531 9 DPMCGWCYGAAPLLEALSAQ 28 (212)
T ss_pred CcchhhhhCccHHHHHHHhc
Confidence 35799999999877766554
No 69
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=23.11 E-value=7.1e+02 Score=24.30 Aligned_cols=32 Identities=22% Similarity=0.059 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 022382 221 GNTYVFLSLYRLTGNVEYLYRAKAFACFLYDR 252 (298)
Q Consensus 221 G~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 252 (298)
=.+.....+|++|+||-|++.-+.+.+.+...
T Consensus 375 ElvEStyyLYrATkdp~yL~vG~~~l~sLe~~ 406 (622)
T KOG2429|consen 375 ELVESTYYLYRATKDPFYLHVGEDMLKSLEKY 406 (622)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Confidence 35677788899999999998766655544443
No 70
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=22.68 E-value=5.3e+02 Score=23.39 Aligned_cols=77 Identities=18% Similarity=0.244 Sum_probs=40.4
Q ss_pred HhcCCCCCchHHHHHHHHHHHHHccCCCCC-CCCCCCCCCCcccccccCchhHHH-------HHHHHHHHhCcHHHHHHH
Q 022382 126 LMDMELKPDEVEDVKGTLRYMIKNRFPSGN-YPSSEGSESDRLVHWCHGAPGVTL-------TLAKAAEVFGEKEFLQAA 197 (298)
Q Consensus 126 L~~~~~~~~~~~~i~~~l~~~~~~~~~~g~-w~~~~~~~~~~~~~wChG~~Gi~~-------~l~~~~~~~~~~~~~~~~ 197 (298)
|.++.-.+-+.+.++++++++.+.+..+-. .-... +-....|-.-.+||+- .+++++-.++|+.+.+.-
T Consensus 197 ls~~tg~~ifee~arkaldflwekr~rss~l~g~~i---nihsgdw~rkdsgigagidsyyey~lkayillgddsfldrf 273 (587)
T KOG2430|consen 197 LSRFTGAPIFEEKARKALDFLWEKRHRSSDLMGTTI---NIHSGDWTRKDSGIGAGIDSYYEYLLKAYILLGDDSFLDRF 273 (587)
T ss_pred HhhccCChhhHHHHHHHHHHHHHHhcccccccceeE---EeccCcceecccCcCcchHHHHHHHHHHhheeccHHHHHHH
Confidence 333333344678899999988753321110 00000 0112234444444433 456666668898888877
Q ss_pred HHHHHHHH
Q 022382 198 VDAGEVVW 205 (298)
Q Consensus 198 ~~~~~~~~ 205 (298)
++-.+.+.
T Consensus 274 n~hydai~ 281 (587)
T KOG2430|consen 274 NKHYDAIK 281 (587)
T ss_pred HHHHHHHH
Confidence 66555443
No 71
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=22.42 E-value=4.5e+02 Score=24.06 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Q 022382 176 GVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRG 208 (298)
Q Consensus 176 Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (298)
|.+++..++.++++.++..+.++++++.++..+
T Consensus 303 a~IlS~amML~~lG~~~~A~~I~~AV~~~l~~G 335 (360)
T PLN00123 303 ALLLSSAMMLRHLQFPSFADRLETAVKRVIAEG 335 (360)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHcC
Confidence 778888888999999999999999999888876
No 72
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=21.94 E-value=3.8e+02 Score=22.78 Aligned_cols=83 Identities=13% Similarity=0.179 Sum_probs=43.4
Q ss_pred HHHHHhcCCCCC-chHHHHHHHHHHHHHccCCCCCCCCCCCCCCCcccccccC-chhHHH---HHHHHHHH---hC--cH
Q 022382 122 IMHVLMDMELKP-DEVEDVKGTLRYMIKNRFPSGNYPSSEGSESDRLVHWCHG-APGVTL---TLAKAAEV---FG--EK 191 (298)
Q Consensus 122 i~~~L~~~~~~~-~~~~~i~~~l~~~~~~~~~~g~w~~~~~~~~~~~~~wChG-~~Gi~~---~l~~~~~~---~~--~~ 191 (298)
++-+|..+.+.. -..+.+.++++|+++++.++|.|+...+.. ......| ...+.+ .++.+.+. .. .+
T Consensus 33 v~k~f~~a~~~i~vd~~~i~~a~~wL~~~Q~~dG~F~e~~~~~---~~~~~g~~~~~~~lTA~VliAL~e~~~~~~~~~~ 109 (246)
T PF07678_consen 33 VVKVFSQAKKYIFVDENVICRAVKWLISQQQPDGSFEEDGPVI---HREMQGGVEDDIALTAYVLIALLEAGSLCDSEKP 109 (246)
T ss_dssp HHHHHHHHTTTS-CEHHHHHHHHHHHHHHBETTSEB--SSS-S---SGGGSGGGTHHHHHHHHHHHHHHHCHCCHTTTHH
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHhhcCCCccccCCCcc---ccccCCCCCCCeeehHHHHHHHHhhhhhccccch
Confidence 344444444432 246788999999998766889886532111 1112222 222333 22233332 11 35
Q ss_pred HHHHHHHHHHHHHHHh
Q 022382 192 EFLQAAVDAGEVVWKR 207 (298)
Q Consensus 192 ~~~~~~~~~~~~~~~~ 207 (298)
.+...++++++++.+.
T Consensus 110 ~~~~~i~kA~~~L~~~ 125 (246)
T PF07678_consen 110 EYENAINKALNYLERH 125 (246)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6788888888877554
No 73
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=21.20 E-value=62 Score=19.91 Aligned_cols=33 Identities=12% Similarity=0.165 Sum_probs=18.4
Q ss_pred ccCchhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC
Q 022382 171 CHGAPGVTLTLAKAAEVFGEKEFLQAAVDAGEVVWKRGLL 210 (298)
Q Consensus 171 ChG~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (298)
++|+.||+....+-.. .+.++.+++.+.+.++.
T Consensus 2 v~GTlGiL~~Ak~~Gl-------I~~~~~~l~~l~~~g~~ 34 (48)
T PF11848_consen 2 VTGTLGILLLAKRRGL-------ISEVKPLLDRLQQAGFR 34 (48)
T ss_pred ceehHHHHHHHHHcCC-------hhhHHHHHHHHHHcCcc
Confidence 5788888775544332 22444555555555553
No 74
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=20.18 E-value=5.4e+02 Score=23.90 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=54.7
Q ss_pred chHHHHHHHHHHHHHccCC---------CC-----CCCCCCC-CCCCc--cccccc-Cch---hHHHHHHHHHHHhC--c
Q 022382 134 DEVEDVKGTLRYMIKNRFP---------SG-----NYPSSEG-SESDR--LVHWCH-GAP---GVTLTLAKAAEVFG--E 190 (298)
Q Consensus 134 ~~~~~i~~~l~~~~~~~~~---------~g-----~w~~~~~-~~~~~--~~~wCh-G~~---Gi~~~l~~~~~~~~--~ 190 (298)
+.++.++=.++|+++.+.+ +| .|..... ...+. ...+-. |+. .++-++..+..+++ |
T Consensus 95 dllde~kwg~D~llkm~~~~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~k~~d 174 (444)
T PF00759_consen 95 DLLDEAKWGLDWLLKMQDSDGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVFKDFD 174 (444)
T ss_dssp HHHHHHHHHHHHHHHTBSCTTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHhccCCCCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhcccCC
Confidence 4567788788999875543 22 1543210 11111 112222 222 23445666777666 4
Q ss_pred HHHHHHHHHHHHHHHHhc---C---CCC------Cccccchhh--HHHHHHHHHHHhCCHHHHHHHHHH
Q 022382 191 KEFLQAAVDAGEVVWKRG---L---LKR------VGICHGISG--NTYVFLSLYRLTGNVEYLYRAKAF 245 (298)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~---~---~~~------~~lCHG~aG--~~~~l~~l~~~~~~~~~~~~~~~~ 245 (298)
+.+.+...++.+..|... . ..+ ...|-..-. .+..-..|++.|++++|++.+.+.
T Consensus 175 ~~~A~~~L~~A~~~~~~a~~~~~~~~~~~~~~~~~~Y~~~~~~De~~wAA~~Ly~aTg~~~Y~~~a~~~ 243 (444)
T PF00759_consen 175 PAYAAQCLKAAKEAYAFAKKNPGVYSDNPQPNGGGFYNSSGYEDELAWAAAELYRATGDESYLDYAKEY 243 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTHGGGTSTCTTTTTSHCS-SHHHHHHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcccCCcccccCCcccCCCcccHHHHHHHHHHHhcCcHHHHHHHHHh
Confidence 655555544444444321 0 001 111110000 355667889999999998876544
Done!