Query 022383
Match_columns 298
No_of_seqs 156 out of 1833
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 03:07:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022383.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/022383hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0328 Predicted ATP-dependen 100.0 5.2E-50 1.1E-54 322.4 21.0 288 10-297 4-291 (400)
2 KOG0330 ATP-dependent RNA heli 100.0 2.5E-49 5.4E-54 331.1 22.9 268 29-297 57-325 (476)
3 COG0513 SrmB Superfamily II DN 100.0 9.7E-47 2.1E-51 345.1 32.2 265 33-297 29-298 (513)
4 KOG0331 ATP-dependent RNA heli 100.0 1.5E-47 3.2E-52 338.8 24.6 262 34-296 92-365 (519)
5 PTZ00110 helicase; Provisional 100.0 1.2E-45 2.6E-50 340.9 32.5 273 24-297 121-402 (545)
6 PRK04837 ATP-dependent RNA hel 100.0 4.4E-45 9.6E-50 329.8 32.9 265 32-297 7-280 (423)
7 PRK11776 ATP-dependent RNA hel 100.0 3.7E-45 8.1E-50 333.7 32.4 264 32-297 3-267 (460)
8 PRK10590 ATP-dependent RNA hel 100.0 9.3E-45 2E-49 330.0 31.6 263 34-297 2-270 (456)
9 PRK11634 ATP-dependent RNA hel 100.0 1E-44 2.2E-49 337.8 32.5 265 32-297 5-270 (629)
10 PRK04537 ATP-dependent RNA hel 100.0 2E-44 4.4E-49 333.8 31.8 264 33-297 9-282 (572)
11 PLN00206 DEAD-box ATP-dependen 100.0 5E-44 1.1E-48 329.1 32.3 270 23-294 111-389 (518)
12 PRK11192 ATP-dependent RNA hel 100.0 1.4E-43 3.1E-48 321.3 33.3 264 34-297 2-270 (434)
13 KOG0338 ATP-dependent RNA heli 100.0 1.6E-44 3.6E-49 311.2 20.7 265 32-296 180-450 (691)
14 KOG0346 RNA helicase [RNA proc 100.0 5.5E-44 1.2E-48 303.1 22.5 264 33-297 19-293 (569)
15 PTZ00424 helicase 45; Provisio 100.0 3.3E-42 7.1E-47 309.9 33.3 267 31-297 26-292 (401)
16 KOG0343 RNA Helicase [RNA proc 100.0 1.1E-43 2.4E-48 308.7 22.7 267 30-298 66-339 (758)
17 KOG0326 ATP-dependent RNA heli 100.0 7.5E-45 1.6E-49 297.3 14.3 264 32-297 84-347 (459)
18 PRK01297 ATP-dependent RNA hel 100.0 3.8E-42 8.2E-47 314.8 33.5 265 32-297 86-360 (475)
19 KOG0345 ATP-dependent RNA heli 100.0 1E-42 2.2E-47 297.7 26.2 262 33-295 4-278 (567)
20 KOG0333 U5 snRNP-like RNA heli 100.0 1.4E-42 2.9E-47 300.3 24.6 290 7-297 219-542 (673)
21 KOG0342 ATP-dependent RNA heli 100.0 1.2E-41 2.6E-46 292.7 24.2 264 31-295 80-353 (543)
22 KOG0339 ATP-dependent RNA heli 100.0 8.8E-42 1.9E-46 294.3 23.3 274 24-297 214-493 (731)
23 KOG0335 ATP-dependent RNA heli 100.0 8.8E-42 1.9E-46 297.4 21.2 286 11-297 52-362 (482)
24 KOG0340 ATP-dependent RNA heli 100.0 2.8E-41 6.1E-46 279.7 20.9 267 30-297 4-279 (442)
25 KOG0336 ATP-dependent RNA heli 100.0 2.5E-40 5.3E-45 278.9 19.6 272 24-297 210-490 (629)
26 KOG0332 ATP-dependent RNA heli 100.0 1.2E-40 2.6E-45 277.6 17.3 288 3-297 64-355 (477)
27 KOG0348 ATP-dependent RNA heli 100.0 1.9E-39 4.1E-44 281.5 20.9 270 24-294 127-447 (708)
28 KOG0334 RNA helicase [RNA proc 100.0 1.4E-39 3.1E-44 302.2 21.3 277 21-297 353-638 (997)
29 KOG0337 ATP-dependent RNA heli 100.0 2.4E-39 5.1E-44 273.7 18.3 266 32-298 20-287 (529)
30 KOG0341 DEAD-box protein abstr 100.0 1.2E-40 2.7E-45 279.0 9.8 274 22-297 159-446 (610)
31 KOG0327 Translation initiation 100.0 9.1E-39 2E-43 267.9 18.3 265 30-297 23-288 (397)
32 KOG0347 RNA helicase [RNA proc 100.0 1.5E-38 3.2E-43 276.7 15.1 268 28-297 176-488 (731)
33 KOG4284 DEAD box protein [Tran 100.0 5.8E-38 1.2E-42 277.4 15.9 268 30-298 22-298 (980)
34 cd00268 DEADc DEAD-box helicas 100.0 1.3E-35 2.8E-40 242.7 24.9 200 35-234 1-202 (203)
35 KOG0329 ATP-dependent RNA heli 100.0 5.7E-37 1.2E-41 244.1 14.8 264 33-297 42-312 (387)
36 TIGR03817 DECH_helic helicase/ 100.0 3.1E-35 6.7E-40 279.3 28.8 247 40-295 21-294 (742)
37 PRK02362 ski2-like helicase; P 100.0 8.8E-35 1.9E-39 278.3 24.7 252 34-295 2-266 (737)
38 PRK00254 ski2-like helicase; P 100.0 6.3E-34 1.4E-38 271.9 24.9 247 34-294 2-260 (720)
39 KOG0350 DEAD-box ATP-dependent 100.0 5.6E-34 1.2E-38 245.8 20.3 261 32-293 126-450 (620)
40 COG1201 Lhr Lhr-like helicases 100.0 3.3E-33 7.2E-38 260.6 24.5 249 40-296 8-277 (814)
41 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.7E-32 1E-36 254.1 27.0 242 46-297 6-297 (844)
42 PRK13767 ATP-dependent helicas 100.0 6.5E-32 1.4E-36 261.3 25.9 252 40-295 18-307 (876)
43 PRK01172 ski2-like helicase; P 100.0 4.4E-32 9.6E-37 258.0 23.2 248 34-295 2-259 (674)
44 PLN03137 ATP-dependent DNA hel 100.0 3.9E-31 8.5E-36 251.8 27.8 251 34-297 436-705 (1195)
45 TIGR00614 recQ_fam ATP-depende 100.0 3.9E-31 8.5E-36 241.4 25.1 232 50-297 6-251 (470)
46 PRK09401 reverse gyrase; Revie 100.0 1.2E-30 2.6E-35 256.1 28.0 241 44-297 69-356 (1176)
47 TIGR01389 recQ ATP-dependent D 100.0 2.1E-30 4.5E-35 243.1 25.4 235 46-297 3-249 (591)
48 PRK11057 ATP-dependent DNA hel 100.0 4.2E-30 9.1E-35 240.7 27.2 242 39-297 8-261 (607)
49 KOG0344 ATP-dependent RNA heli 100.0 1.9E-31 4.2E-36 234.7 16.7 270 23-292 122-407 (593)
50 PF00270 DEAD: DEAD/DEAH box h 100.0 3.5E-30 7.6E-35 204.4 20.7 165 57-222 1-168 (169)
51 PRK14701 reverse gyrase; Provi 100.0 5.2E-29 1.1E-33 249.6 26.9 244 43-297 67-358 (1638)
52 COG1205 Distinct helicase fami 100.0 7E-29 1.5E-33 237.1 25.3 248 40-291 55-325 (851)
53 COG1204 Superfamily II helicas 100.0 4.2E-29 9.1E-34 235.6 19.9 249 39-294 15-275 (766)
54 COG1202 Superfamily II helicas 100.0 9.2E-29 2E-33 217.1 19.0 257 33-298 194-466 (830)
55 TIGR01054 rgy reverse gyrase. 100.0 6E-28 1.3E-32 237.4 26.9 242 43-297 66-354 (1171)
56 PRK10689 transcription-repair 100.0 1.3E-27 2.8E-32 234.4 28.2 237 41-296 587-833 (1147)
57 TIGR00580 mfd transcription-re 100.0 1.5E-27 3.3E-32 229.4 28.2 237 40-295 436-683 (926)
58 PRK09751 putative ATP-dependen 100.0 4.2E-27 9.2E-32 232.5 24.0 218 75-295 1-267 (1490)
59 PRK10917 ATP-dependent DNA hel 100.0 3.5E-26 7.5E-31 216.6 27.5 234 45-296 252-503 (681)
60 TIGR03158 cas3_cyano CRISPR-as 100.0 4.6E-26 1E-30 200.7 25.2 230 59-296 1-296 (357)
61 COG0514 RecQ Superfamily II DN 99.9 2.7E-26 5.8E-31 207.5 18.7 238 46-297 7-255 (590)
62 KOG0952 DNA/RNA helicase MER3/ 99.9 3E-26 6.4E-31 212.9 19.2 240 50-296 105-373 (1230)
63 TIGR00643 recG ATP-dependent D 99.9 5.8E-25 1.3E-29 207.0 26.6 234 43-295 224-479 (630)
64 PHA02653 RNA helicase NPH-II; 99.9 5.7E-25 1.2E-29 205.1 23.0 226 57-295 166-418 (675)
65 TIGR01587 cas3_core CRISPR-ass 99.9 2.1E-25 4.5E-30 197.8 19.0 220 72-297 1-247 (358)
66 KOG0349 Putative DEAD-box RNA 99.9 2.6E-25 5.7E-30 189.6 12.3 196 102-297 287-530 (725)
67 PHA02558 uvsW UvsW helicase; P 99.9 4.6E-24 1E-28 196.1 19.8 151 53-219 112-262 (501)
68 PRK11664 ATP-dependent RNA hel 99.9 3.1E-23 6.8E-28 198.1 24.9 218 59-294 9-234 (812)
69 TIGR01970 DEAH_box_HrpB ATP-de 99.9 7.2E-23 1.6E-27 195.3 25.7 220 59-295 6-232 (819)
70 PRK13766 Hef nuclease; Provisi 99.9 1.3E-22 2.9E-27 196.5 24.2 163 51-217 11-173 (773)
71 COG1111 MPH1 ERCC4-like helica 99.9 4.8E-22 1E-26 173.3 23.0 164 52-220 12-176 (542)
72 smart00487 DEXDc DEAD-like hel 99.9 5.7E-22 1.2E-26 160.6 21.9 187 50-237 3-191 (201)
73 KOG0353 ATP-dependent DNA heli 99.9 1.3E-22 2.9E-27 170.8 18.2 253 33-297 71-342 (695)
74 PRK12898 secA preprotein trans 99.9 5.4E-22 1.2E-26 182.9 21.8 236 51-297 100-498 (656)
75 COG4581 Superfamily II RNA hel 99.9 3.9E-22 8.6E-27 189.5 19.8 179 47-236 112-292 (1041)
76 KOG0351 ATP-dependent DNA heli 99.9 1.5E-21 3.2E-26 186.3 19.3 237 47-297 256-510 (941)
77 KOG0951 RNA helicase BRR2, DEA 99.9 1E-21 2.2E-26 185.4 17.8 251 39-296 295-570 (1674)
78 TIGR03714 secA2 accessory Sec 99.9 5.6E-21 1.2E-25 178.3 22.3 130 56-188 69-208 (762)
79 KOG0352 ATP-dependent DNA heli 99.9 1E-21 2.2E-26 167.5 13.6 242 42-298 5-281 (641)
80 PRK09694 helicase Cas3; Provis 99.9 2.2E-20 4.8E-25 178.6 23.5 242 53-296 284-584 (878)
81 PRK12899 secA preprotein trans 99.9 2.4E-21 5.3E-26 182.0 15.6 149 36-189 65-229 (970)
82 KOG0948 Nuclear exosomal RNA h 99.9 2.7E-21 5.9E-26 174.7 15.2 225 55-295 129-406 (1041)
83 TIGR00963 secA preprotein tran 99.9 2.8E-20 6E-25 172.7 21.6 130 51-189 53-190 (745)
84 KOG0947 Cytoplasmic exosomal R 99.9 1.6E-20 3.4E-25 173.5 18.0 155 51-220 294-448 (1248)
85 PRK09200 preprotein translocas 99.9 6.4E-20 1.4E-24 172.7 22.0 131 51-188 75-212 (790)
86 KOG0354 DEAD-box like helicase 99.9 9.8E-21 2.1E-25 173.8 14.3 163 54-220 61-225 (746)
87 PRK05580 primosome assembly pr 99.9 2.7E-19 5.9E-24 169.3 24.4 156 55-223 144-311 (679)
88 TIGR00603 rad25 DNA repair hel 99.8 5.2E-19 1.1E-23 165.1 18.9 222 55-293 255-517 (732)
89 PRK11131 ATP-dependent RNA hel 99.8 4.9E-18 1.1E-22 166.2 25.2 220 57-297 76-311 (1294)
90 cd00046 DEXDc DEAD-like helica 99.8 1.8E-18 4E-23 132.1 17.3 144 71-216 1-144 (144)
91 COG1061 SSL2 DNA or RNA helica 99.8 4.3E-19 9.4E-24 160.4 15.1 224 54-296 35-307 (442)
92 PRK13104 secA preprotein trans 99.8 2.9E-18 6.3E-23 161.6 20.6 126 56-188 83-215 (896)
93 PRK12904 preprotein translocas 99.8 5.2E-18 1.1E-22 159.6 21.1 129 51-188 78-214 (830)
94 COG1200 RecG RecG-like helicas 99.8 5.5E-17 1.2E-21 147.4 21.9 237 39-295 246-504 (677)
95 TIGR00595 priA primosomal prot 99.8 3.5E-17 7.7E-22 149.9 20.1 134 74-221 1-144 (505)
96 PRK11448 hsdR type I restricti 99.8 1E-17 2.3E-22 164.6 17.0 160 55-219 413-597 (1123)
97 PF04851 ResIII: Type III rest 99.8 8.5E-18 1.8E-22 134.8 12.5 152 55-218 3-184 (184)
98 TIGR01967 DEAH_box_HrpA ATP-de 99.8 2.7E-16 5.8E-21 154.6 24.7 220 61-296 73-303 (1283)
99 COG4098 comFA Superfamily II D 99.8 2.6E-16 5.6E-21 131.4 20.3 221 55-296 97-329 (441)
100 COG1110 Reverse gyrase [DNA re 99.7 1.3E-16 2.8E-21 149.4 19.7 239 45-297 72-363 (1187)
101 KOG0950 DNA polymerase theta/e 99.7 2.5E-17 5.4E-22 153.2 12.9 172 41-218 209-389 (1008)
102 COG1197 Mfd Transcription-repa 99.7 2.2E-15 4.8E-20 144.2 23.5 236 41-297 580-828 (1139)
103 COG1203 CRISPR-associated heli 99.7 3.6E-16 7.8E-21 149.5 16.8 242 55-297 195-465 (733)
104 COG4096 HsdR Type I site-speci 99.7 8E-16 1.7E-20 141.9 16.8 153 54-222 164-326 (875)
105 PRK13107 preprotein translocas 99.7 4.3E-15 9.3E-20 140.1 16.9 127 56-189 83-216 (908)
106 TIGR00348 hsdR type I site-spe 99.6 1.5E-14 3.2E-19 137.2 18.2 151 56-218 239-404 (667)
107 COG1198 PriA Primosomal protei 99.6 4.8E-14 1E-18 131.9 18.5 215 54-284 197-432 (730)
108 COG1643 HrpA HrpA-like helicas 99.6 6.6E-13 1.4E-17 126.2 22.9 224 56-294 51-281 (845)
109 KOG0949 Predicted helicase, DE 99.6 1.6E-14 3.6E-19 134.6 10.5 160 55-219 511-674 (1330)
110 PRK12906 secA preprotein trans 99.5 1.2E-12 2.6E-17 123.4 18.4 130 51-188 77-213 (796)
111 TIGR01407 dinG_rel DnaQ family 99.5 6E-13 1.3E-17 129.9 17.1 94 40-137 231-331 (850)
112 KOG0922 DEAH-box RNA helicase 99.4 2.9E-11 6.4E-16 109.6 21.7 221 56-295 52-281 (674)
113 PRK04914 ATP-dependent helicas 99.4 1.4E-11 3E-16 119.5 20.9 158 55-217 152-316 (956)
114 TIGR03117 cas_csf4 CRISPR-asso 99.4 3.6E-12 7.8E-17 118.5 14.8 61 64-125 10-70 (636)
115 KOG0951 RNA helicase BRR2, DEA 99.4 2.9E-12 6.4E-17 122.5 14.1 221 54-293 1142-1380(1674)
116 PRK07246 bifunctional ATP-depe 99.4 5.8E-12 1.3E-16 121.7 15.7 83 51-138 242-329 (820)
117 PRK12326 preprotein translocas 99.4 6.4E-11 1.4E-15 109.9 20.9 130 51-188 75-211 (764)
118 PRK13103 secA preprotein trans 99.4 5.7E-11 1.2E-15 112.7 18.1 126 56-188 83-215 (913)
119 PF07652 Flavi_DEAD: Flaviviru 99.3 3.2E-12 7E-17 95.4 7.4 136 69-220 3-140 (148)
120 KOG0920 ATP-dependent RNA heli 99.3 2.3E-10 5E-15 109.0 21.6 245 40-295 158-436 (924)
121 KOG0925 mRNA splicing factor A 99.3 3.3E-10 7.2E-15 99.3 20.2 250 30-295 22-276 (699)
122 KOG0926 DEAH-box RNA helicase 99.3 7.7E-11 1.7E-15 108.6 16.3 224 61-297 262-506 (1172)
123 smart00488 DEXDc2 DEAD-like he 99.3 7.6E-11 1.6E-15 101.0 13.6 72 52-124 6-84 (289)
124 smart00489 DEXDc3 DEAD-like he 99.3 7.6E-11 1.6E-15 101.0 13.6 72 52-124 6-84 (289)
125 PF00176 SNF2_N: SNF2 family N 99.3 1E-10 2.2E-15 101.0 14.0 143 70-216 25-172 (299)
126 PRK08074 bifunctional ATP-depe 99.2 2.5E-10 5.3E-15 112.4 15.9 65 52-119 255-323 (928)
127 CHL00122 secA preprotein trans 99.2 9.3E-10 2E-14 104.2 16.9 130 51-188 73-209 (870)
128 PLN03142 Probable chromatin-re 99.2 8.4E-10 1.8E-14 107.8 17.0 153 55-216 169-329 (1033)
129 KOG1123 RNA polymerase II tran 99.2 1.1E-10 2.3E-15 102.7 9.0 223 55-295 302-566 (776)
130 KOG0923 mRNA splicing factor A 99.2 3.1E-09 6.8E-14 96.4 18.0 228 53-295 263-496 (902)
131 PRK14873 primosome assembly pr 99.1 2.2E-09 4.7E-14 101.2 15.4 137 74-222 164-309 (665)
132 PRK12902 secA preprotein trans 99.1 6.3E-09 1.4E-13 98.6 18.2 130 51-188 82-218 (939)
133 PF02399 Herpes_ori_bp: Origin 99.1 1.4E-08 3.1E-13 95.3 18.4 152 71-235 50-210 (824)
134 PRK12903 secA preprotein trans 99.0 2.7E-08 5.8E-13 94.2 19.0 130 51-188 75-211 (925)
135 PF07517 SecA_DEAD: SecA DEAD- 99.0 1.9E-08 4.1E-13 84.3 15.7 130 51-188 74-210 (266)
136 TIGR02562 cas3_yersinia CRISPR 99.0 5.8E-09 1.3E-13 100.4 13.2 175 46-222 399-640 (1110)
137 KOG0924 mRNA splicing factor A 99.0 7.1E-08 1.5E-12 88.1 19.1 224 53-295 354-586 (1042)
138 PRK11747 dinG ATP-dependent DN 99.0 1.5E-08 3.3E-13 96.9 15.0 64 52-118 23-95 (697)
139 KOG0952 DNA/RNA helicase MER3/ 98.9 1.4E-09 3.1E-14 103.1 3.7 231 55-292 927-1173(1230)
140 COG4889 Predicted helicase [Ge 98.9 2.8E-09 6.2E-14 99.4 5.2 140 43-188 149-317 (1518)
141 PF13086 AAA_11: AAA domain; P 98.8 7.4E-08 1.6E-12 80.0 12.1 69 55-123 1-75 (236)
142 COG1199 DinG Rad3-related DNA 98.8 3.7E-08 8.1E-13 94.4 11.3 73 49-123 9-85 (654)
143 PRK15483 type III restriction- 98.8 7.1E-08 1.5E-12 93.1 12.6 143 71-218 60-240 (986)
144 COG0610 Type I site-specific r 98.8 8.7E-08 1.9E-12 94.4 13.3 137 71-216 274-413 (962)
145 COG0556 UvrB Helicase subunit 98.8 1.7E-06 3.7E-11 77.4 19.0 67 56-128 13-84 (663)
146 KOG0385 Chromatin remodeling c 98.7 2.8E-07 6.1E-12 85.3 14.3 158 55-222 167-334 (971)
147 KOG0389 SNF2 family DNA-depend 98.7 1.2E-07 2.6E-12 87.9 9.4 162 56-224 400-571 (941)
148 KOG0390 DNA repair protein, SN 98.7 9.2E-07 2E-11 83.5 15.2 164 55-224 238-423 (776)
149 KOG1000 Chromatin remodeling p 98.6 6.7E-06 1.4E-10 73.0 19.0 152 53-216 196-348 (689)
150 KOG4150 Predicted ATP-dependen 98.6 4.2E-07 9.1E-12 81.7 11.7 248 44-294 275-547 (1034)
151 PF02562 PhoH: PhoH-like prote 98.6 3.8E-07 8.3E-12 73.5 9.9 150 53-215 2-155 (205)
152 PF06862 DUF1253: Protein of u 98.6 9.3E-06 2E-10 72.7 18.5 196 100-296 36-324 (442)
153 PF13604 AAA_30: AAA domain; P 98.5 5.7E-07 1.2E-11 72.7 9.5 123 55-215 1-130 (196)
154 KOG0387 Transcription-coupled 98.5 1.3E-06 2.9E-11 81.2 12.6 159 55-224 205-384 (923)
155 PF12340 DUF3638: Protein of u 98.4 8.9E-06 1.9E-10 66.3 11.8 128 34-166 4-145 (229)
156 PF09848 DUF2075: Uncharacteri 98.3 4.3E-06 9.4E-11 74.0 10.2 108 72-202 3-117 (352)
157 KOG1002 Nucleotide excision re 98.3 8E-06 1.7E-10 72.5 11.4 168 55-233 184-375 (791)
158 TIGR00604 rad3 DNA repair heli 98.3 3.3E-06 7.1E-11 81.5 9.8 75 51-125 6-84 (705)
159 KOG1802 RNA helicase nonsense 98.3 2.6E-06 5.7E-11 77.9 8.4 76 47-124 402-477 (935)
160 PRK10536 hypothetical protein; 98.3 2.4E-05 5.1E-10 65.1 13.4 143 51-213 55-210 (262)
161 KOG2340 Uncharacterized conser 98.3 2.3E-05 5E-10 70.2 13.9 177 53-230 214-493 (698)
162 TIGR01447 recD exodeoxyribonuc 98.3 1.5E-05 3.2E-10 74.8 13.5 141 57-215 147-295 (586)
163 PRK10875 recD exonuclease V su 98.3 2.8E-05 6E-10 73.2 15.1 140 57-215 154-301 (615)
164 PF13872 AAA_34: P-loop contai 98.3 1.8E-05 3.9E-10 66.9 11.9 160 55-222 37-226 (303)
165 TIGR00376 DNA helicase, putati 98.2 1.6E-05 3.4E-10 75.6 12.5 67 54-123 156-223 (637)
166 TIGR01448 recD_rel helicase, p 98.2 2.5E-05 5.5E-10 75.2 13.5 126 54-215 322-452 (720)
167 KOG0392 SNF2 family DNA-depend 98.2 1.2E-05 2.6E-10 78.3 10.9 161 55-223 975-1146(1549)
168 PF13245 AAA_19: Part of AAA d 98.2 8.2E-06 1.8E-10 55.0 7.3 51 70-121 10-62 (76)
169 KOG1803 DNA helicase [Replicat 98.1 1.6E-05 3.4E-10 72.4 9.1 65 54-121 184-249 (649)
170 KOG0384 Chromodomain-helicase 98.1 1.3E-05 2.8E-10 78.1 9.0 159 54-224 369-544 (1373)
171 COG3587 Restriction endonuclea 98.1 2E-05 4.3E-10 74.3 9.6 146 71-221 75-247 (985)
172 COG0653 SecA Preprotein transl 98.1 0.00012 2.6E-09 69.8 14.3 127 57-188 80-213 (822)
173 KOG4439 RNA polymerase II tran 98.0 1.5E-05 3.3E-10 73.5 7.7 134 55-190 325-478 (901)
174 PRK12900 secA preprotein trans 98.0 1.8E-05 3.9E-10 76.5 6.8 126 56-188 139-271 (1025)
175 PRK12723 flagellar biosynthesi 97.9 0.00033 7.2E-09 62.3 13.9 129 71-227 175-309 (388)
176 PF00580 UvrD-helicase: UvrD/R 97.9 4.1E-05 8.9E-10 66.5 7.7 122 56-185 1-125 (315)
177 PRK13889 conjugal transfer rel 97.9 0.00036 7.7E-09 69.0 14.1 123 55-215 346-470 (988)
178 KOG0391 SNF2 family DNA-depend 97.9 0.00014 3E-09 70.9 10.7 159 55-223 615-783 (1958)
179 TIGR02768 TraA_Ti Ti-type conj 97.8 0.00042 9.1E-09 67.2 14.1 121 55-213 352-474 (744)
180 KOG0989 Replication factor C, 97.8 0.0001 2.3E-09 62.0 8.4 59 170-229 124-185 (346)
181 COG1875 NYN ribonuclease and A 97.8 0.00027 5.9E-09 61.0 10.8 144 51-213 224-385 (436)
182 PF13401 AAA_22: AAA domain; P 97.8 0.00018 3.9E-09 53.9 8.9 20 69-88 3-22 (131)
183 PRK12901 secA preprotein trans 97.8 4.6E-05 1E-09 73.9 6.6 128 56-188 168-303 (1112)
184 PF14617 CMS1: U3-containing 9 97.8 7.1E-05 1.5E-09 62.2 6.8 87 99-186 124-212 (252)
185 cd00009 AAA The AAA+ (ATPases 97.7 0.00075 1.6E-08 51.1 11.5 17 70-86 19-35 (151)
186 PRK04296 thymidine kinase; Pro 97.7 0.00011 2.4E-09 59.2 6.4 37 70-109 2-38 (190)
187 PRK08181 transposase; Validate 97.6 0.00086 1.9E-08 56.8 11.4 58 57-118 89-150 (269)
188 KOG0953 Mitochondrial RNA heli 97.6 7.1E-05 1.5E-09 67.5 4.9 104 70-194 191-294 (700)
189 PRK06526 transposase; Provisio 97.6 0.00019 4.2E-09 60.3 7.3 22 67-88 95-116 (254)
190 KOG1805 DNA replication helica 97.6 0.00046 9.9E-09 66.3 10.0 138 38-190 656-811 (1100)
191 PF05970 PIF1: PIF1-like helic 97.6 0.0002 4.4E-09 63.7 7.1 60 55-117 1-66 (364)
192 smart00382 AAA ATPases associa 97.5 0.00035 7.5E-09 52.5 7.1 41 70-113 2-42 (148)
193 PF00448 SRP54: SRP54-type pro 97.5 0.00099 2.1E-08 53.8 10.0 128 72-225 3-134 (196)
194 PRK14974 cell division protein 97.5 0.0015 3.3E-08 57.1 11.6 130 72-227 142-275 (336)
195 PRK13826 Dtr system oriT relax 97.5 0.0024 5.3E-08 63.7 14.1 137 40-215 367-505 (1102)
196 KOG1132 Helicase of the DEAD s 97.5 0.00099 2.1E-08 63.5 10.8 71 55-125 21-134 (945)
197 PRK14722 flhF flagellar biosyn 97.5 0.0011 2.3E-08 58.7 10.5 131 70-227 137-269 (374)
198 COG1419 FlhF Flagellar GTP-bin 97.4 0.0078 1.7E-07 53.3 14.2 131 70-229 203-337 (407)
199 TIGR01075 uvrD DNA helicase II 97.3 0.0014 2.9E-08 63.8 9.8 70 54-125 3-73 (715)
200 PRK06921 hypothetical protein; 97.3 0.0038 8.3E-08 53.0 11.4 46 69-117 116-161 (266)
201 PRK11889 flhF flagellar biosyn 97.3 0.0045 9.8E-08 54.9 11.9 129 71-228 242-375 (436)
202 KOG0386 Chromatin remodeling c 97.3 0.00067 1.4E-08 65.4 7.1 155 54-216 393-554 (1157)
203 PF03354 Terminase_1: Phage Te 97.3 0.00072 1.6E-08 62.4 7.3 148 58-213 1-160 (477)
204 COG0553 HepA Superfamily II DN 97.3 0.003 6.5E-08 62.8 12.1 164 54-222 337-517 (866)
205 PRK11054 helD DNA helicase IV; 97.3 0.0015 3.2E-08 62.7 9.3 81 53-135 194-275 (684)
206 PRK05642 DNA replication initi 97.3 0.002 4.4E-08 53.6 9.1 44 175-218 97-141 (234)
207 KOG0388 SNF2 family DNA-depend 97.3 0.0021 4.6E-08 60.0 9.6 158 56-223 568-741 (1185)
208 PRK05703 flhF flagellar biosyn 97.2 0.0066 1.4E-07 55.0 12.6 128 70-227 221-354 (424)
209 PRK00149 dnaA chromosomal repl 97.2 0.003 6.5E-08 58.0 10.5 47 71-119 149-195 (450)
210 cd01120 RecA-like_NTPases RecA 97.2 0.0077 1.7E-07 46.5 11.5 38 73-113 2-39 (165)
211 PF00308 Bac_DnaA: Bacterial d 97.2 0.0018 3.9E-08 53.3 8.1 106 72-219 36-143 (219)
212 PHA02533 17 large terminase pr 97.2 0.0036 7.9E-08 58.3 10.8 148 55-216 59-210 (534)
213 PRK11773 uvrD DNA-dependent he 97.2 0.0018 3.8E-08 63.0 9.1 71 54-126 8-79 (721)
214 TIGR02760 TraI_TIGR conjugativ 97.2 0.041 8.8E-07 59.1 19.4 209 55-294 429-648 (1960)
215 PRK08727 hypothetical protein; 97.2 0.0028 6.1E-08 52.7 9.0 35 71-108 42-76 (233)
216 TIGR02785 addA_Gpos recombinat 97.2 0.0037 8E-08 64.2 11.3 123 56-186 2-126 (1232)
217 PRK07952 DNA replication prote 97.1 0.0068 1.5E-07 50.6 10.9 44 173-217 160-205 (244)
218 PRK10919 ATP-dependent DNA hel 97.1 0.0011 2.4E-08 63.8 7.0 69 55-125 2-71 (672)
219 KOG0921 Dosage compensation co 97.1 0.0015 3.4E-08 62.3 7.0 146 59-217 382-536 (1282)
220 TIGR00362 DnaA chromosomal rep 97.1 0.0054 1.2E-07 55.5 10.4 37 71-108 137-173 (405)
221 PF05621 TniB: Bacterial TniB 97.1 0.003 6.5E-08 53.8 8.0 117 71-212 62-186 (302)
222 PRK05707 DNA polymerase III su 97.1 0.0064 1.4E-07 53.2 10.4 33 56-88 4-40 (328)
223 PLN03025 replication factor C 97.1 0.011 2.4E-07 51.7 11.9 39 174-213 98-136 (319)
224 cd01124 KaiC KaiC is a circadi 97.0 0.0054 1.2E-07 49.0 9.2 48 73-124 2-49 (187)
225 PRK00411 cdc6 cell division co 97.0 0.0071 1.5E-07 54.5 10.8 36 71-107 56-91 (394)
226 TIGR03420 DnaA_homol_Hda DnaA 97.0 0.0052 1.1E-07 50.7 9.1 20 69-88 37-56 (226)
227 PRK06835 DNA replication prote 97.0 0.01 2.3E-07 51.8 11.1 46 69-118 182-227 (329)
228 PRK14956 DNA polymerase III su 97.0 0.0062 1.3E-07 55.5 10.0 19 72-90 42-60 (484)
229 PRK14087 dnaA chromosomal repl 97.0 0.0071 1.5E-07 55.4 10.4 108 71-218 142-251 (450)
230 TIGR00631 uvrb excinuclease AB 97.0 0.0091 2E-07 57.1 11.4 67 55-127 9-80 (655)
231 PRK12377 putative replication 97.0 0.0049 1.1E-07 51.6 8.6 46 70-119 101-146 (248)
232 KOG1015 Transcription regulato 97.0 0.013 2.9E-07 56.6 12.1 147 70-222 696-866 (1567)
233 COG4626 Phage terminase-like p 97.0 0.0071 1.5E-07 55.4 10.0 148 54-214 60-223 (546)
234 TIGR01547 phage_term_2 phage t 96.9 0.0041 8.8E-08 56.1 8.4 135 72-218 3-142 (396)
235 PF13177 DNA_pol3_delta2: DNA 96.9 0.018 3.9E-07 45.0 10.9 44 174-218 101-144 (162)
236 PRK14088 dnaA chromosomal repl 96.9 0.012 2.6E-07 53.8 11.3 45 71-117 131-175 (440)
237 COG0470 HolB ATPase involved i 96.9 0.012 2.6E-07 51.4 11.0 40 174-214 108-147 (325)
238 PRK14960 DNA polymerase III su 96.9 0.017 3.6E-07 54.7 12.2 39 174-213 117-155 (702)
239 COG3421 Uncharacterized protei 96.9 0.0029 6.3E-08 58.1 6.8 149 75-227 2-175 (812)
240 PRK14964 DNA polymerase III su 96.9 0.032 7E-07 51.3 13.6 39 174-213 115-153 (491)
241 PRK08084 DNA replication initi 96.9 0.01 2.2E-07 49.5 9.7 37 70-109 45-81 (235)
242 COG1484 DnaC DNA replication p 96.9 0.008 1.7E-07 50.6 8.9 67 52-122 80-153 (254)
243 TIGR01074 rep ATP-dependent DN 96.8 0.0033 7.2E-08 60.7 7.5 68 56-125 2-70 (664)
244 PF00004 AAA: ATPase family as 96.8 0.017 3.7E-07 43.0 9.9 17 175-191 58-74 (132)
245 PRK08116 hypothetical protein; 96.8 0.012 2.6E-07 50.0 9.9 45 71-119 115-159 (268)
246 KOG0741 AAA+-type ATPase [Post 96.8 0.0098 2.1E-07 54.1 9.5 59 172-235 321-393 (744)
247 PF13173 AAA_14: AAA domain 96.8 0.03 6.5E-07 41.8 11.0 38 175-215 61-98 (128)
248 PRK14949 DNA polymerase III su 96.8 0.012 2.7E-07 57.3 10.9 38 174-212 118-155 (944)
249 PRK07003 DNA polymerase III su 96.8 0.01 2.2E-07 56.9 10.0 40 174-214 118-157 (830)
250 TIGR02881 spore_V_K stage V sp 96.8 0.018 3.8E-07 48.8 10.8 18 71-88 43-60 (261)
251 COG1435 Tdk Thymidine kinase [ 96.8 0.024 5.2E-07 45.0 10.4 107 70-204 4-110 (201)
252 PRK06995 flhF flagellar biosyn 96.8 0.044 9.5E-07 50.3 13.6 22 70-91 256-277 (484)
253 PRK06893 DNA replication initi 96.8 0.008 1.7E-07 49.9 8.3 46 174-219 90-137 (229)
254 PRK12727 flagellar biosynthesi 96.8 0.093 2E-06 48.6 15.6 21 69-89 349-369 (559)
255 PRK12402 replication factor C 96.8 0.025 5.5E-07 49.7 12.0 39 174-213 124-162 (337)
256 PRK00771 signal recognition pa 96.8 0.023 5E-07 51.6 11.7 36 71-109 96-131 (437)
257 PF05127 Helicase_RecD: Helica 96.7 0.0014 3.1E-08 51.6 3.3 123 74-217 1-124 (177)
258 PHA02544 44 clamp loader, smal 96.7 0.012 2.7E-07 51.2 9.6 40 175-214 100-139 (316)
259 PRK07764 DNA polymerase III su 96.7 0.015 3.3E-07 56.9 10.9 39 174-213 119-157 (824)
260 CHL00181 cbbX CbbX; Provisiona 96.7 0.014 3E-07 50.2 9.5 19 70-88 59-77 (287)
261 KOG0738 AAA+-type ATPase [Post 96.7 0.023 5.1E-07 49.8 10.6 56 31-86 181-261 (491)
262 PRK13833 conjugal transfer pro 96.7 0.0086 1.9E-07 52.1 8.2 64 47-113 122-186 (323)
263 cd01122 GP4d_helicase GP4d_hel 96.7 0.015 3.2E-07 49.6 9.6 121 65-190 25-155 (271)
264 TIGR02782 TrbB_P P-type conjug 96.7 0.011 2.4E-07 51.0 8.8 67 44-113 107-174 (299)
265 PRK14958 DNA polymerase III su 96.7 0.015 3.2E-07 54.1 10.2 39 174-213 118-156 (509)
266 COG1444 Predicted P-loop ATPas 96.7 0.027 5.9E-07 53.9 11.7 158 39-217 198-357 (758)
267 PRK11331 5-methylcytosine-spec 96.6 0.011 2.4E-07 53.4 8.6 33 56-88 180-212 (459)
268 TIGR01073 pcrA ATP-dependent D 96.6 0.0058 1.3E-07 59.6 7.3 71 54-126 3-74 (726)
269 PRK12323 DNA polymerase III su 96.6 0.018 4E-07 54.3 10.1 41 174-215 123-163 (700)
270 PRK12422 chromosomal replicati 96.6 0.021 4.6E-07 52.1 10.4 48 174-221 201-250 (445)
271 PRK14086 dnaA chromosomal repl 96.6 0.019 4.2E-07 53.9 10.1 107 71-219 315-423 (617)
272 PRK08903 DnaA regulatory inact 96.6 0.018 3.8E-07 47.7 9.0 43 175-218 90-133 (227)
273 PRK07994 DNA polymerase III su 96.6 0.032 6.8E-07 53.1 11.5 38 174-212 118-155 (647)
274 PRK13709 conjugal transfer nic 96.6 0.029 6.2E-07 59.0 12.1 64 54-118 966-1033(1747)
275 PRK08769 DNA polymerase III su 96.6 0.028 6.1E-07 48.9 10.4 141 53-215 2-152 (319)
276 TIGR02928 orc1/cdc6 family rep 96.6 0.019 4.1E-07 51.1 9.7 24 71-95 41-64 (365)
277 PRK14721 flhF flagellar biosyn 96.5 0.029 6.4E-07 50.5 10.7 20 70-89 191-210 (420)
278 TIGR02880 cbbX_cfxQ probable R 96.5 0.021 4.5E-07 49.0 9.4 18 70-87 58-75 (284)
279 TIGR03877 thermo_KaiC_1 KaiC d 96.5 0.021 4.6E-07 47.6 9.2 53 69-125 20-72 (237)
280 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.038 8.3E-07 42.8 9.8 53 173-225 93-147 (159)
281 PTZ00112 origin recognition co 96.5 0.072 1.6E-06 52.1 13.3 28 174-202 868-895 (1164)
282 KOG0298 DEAD box-containing he 96.5 0.017 3.6E-07 57.5 9.3 149 69-222 373-556 (1394)
283 TIGR00678 holB DNA polymerase 96.5 0.048 1E-06 43.6 10.7 39 174-213 95-133 (188)
284 PRK14712 conjugal transfer nic 96.5 0.02 4.3E-07 59.5 10.2 63 55-118 835-901 (1623)
285 PRK08533 flagellar accessory p 96.5 0.056 1.2E-06 44.9 11.3 54 67-124 21-74 (230)
286 PRK14962 DNA polymerase III su 96.5 0.037 8E-07 51.0 11.0 18 72-89 38-55 (472)
287 PRK14723 flhF flagellar biosyn 96.4 0.033 7.1E-07 53.8 10.9 131 70-227 185-317 (767)
288 PHA03368 DNA packaging termina 96.4 0.016 3.4E-07 54.5 8.4 136 70-218 254-392 (738)
289 PRK13894 conjugal transfer ATP 96.4 0.016 3.4E-07 50.6 7.9 66 45-113 124-190 (319)
290 PRK00440 rfc replication facto 96.4 0.056 1.2E-06 47.0 11.6 38 175-213 102-139 (319)
291 PRK09183 transposase/IS protei 96.4 0.015 3.4E-07 49.1 7.7 22 67-88 99-120 (259)
292 PRK08699 DNA polymerase III su 96.4 0.04 8.6E-07 48.2 10.4 33 56-88 2-39 (325)
293 PRK14961 DNA polymerase III su 96.4 0.031 6.7E-07 49.8 10.0 39 174-213 118-156 (363)
294 PRK05973 replicative DNA helic 96.4 0.04 8.7E-07 45.8 9.9 84 36-124 21-114 (237)
295 TIGR00064 ftsY signal recognit 96.4 0.085 1.9E-06 44.9 12.1 35 71-108 73-107 (272)
296 PRK06731 flhF flagellar biosyn 96.4 0.1 2.3E-06 44.3 12.5 130 70-228 75-209 (270)
297 PRK08691 DNA polymerase III su 96.4 0.045 9.7E-07 52.2 11.1 39 174-213 118-156 (709)
298 COG2256 MGS1 ATPase related to 96.4 0.011 2.3E-07 52.1 6.5 18 71-88 49-66 (436)
299 TIGR01425 SRP54_euk signal rec 96.4 0.11 2.4E-06 46.9 13.2 59 72-136 102-162 (429)
300 PF05876 Terminase_GpA: Phage 96.3 0.014 3.1E-07 54.8 7.7 126 54-189 15-148 (557)
301 KOG1001 Helicase-like transcri 96.3 0.029 6.2E-07 53.6 9.7 125 58-191 135-270 (674)
302 PRK05986 cob(I)alamin adenolsy 96.3 0.074 1.6E-06 42.5 10.5 140 68-225 20-167 (191)
303 TIGR03881 KaiC_arch_4 KaiC dom 96.3 0.061 1.3E-06 44.5 10.6 52 69-124 19-70 (229)
304 PF02572 CobA_CobO_BtuR: ATP:c 96.2 0.15 3.2E-06 40.1 11.8 138 73-225 6-148 (172)
305 PRK11823 DNA repair protein Ra 96.2 0.051 1.1E-06 49.7 10.6 89 69-189 79-170 (446)
306 TIGR00708 cobA cob(I)alamin ad 96.2 0.083 1.8E-06 41.5 10.3 53 173-225 95-149 (173)
307 TIGR00596 rad1 DNA repair prot 96.2 0.013 2.8E-07 57.2 7.0 67 152-218 8-74 (814)
308 PRK14955 DNA polymerase III su 96.2 0.06 1.3E-06 48.6 10.9 40 173-213 125-164 (397)
309 PRK14965 DNA polymerase III su 96.2 0.08 1.7E-06 50.2 12.1 39 174-213 118-156 (576)
310 PRK14957 DNA polymerase III su 96.2 0.07 1.5E-06 49.9 11.4 39 174-213 118-156 (546)
311 COG1474 CDC6 Cdc6-related prot 96.2 0.13 2.7E-06 45.9 12.5 30 174-204 122-151 (366)
312 PF05496 RuvB_N: Holliday junc 96.2 0.0069 1.5E-07 49.4 4.2 17 71-87 51-67 (233)
313 PRK08939 primosomal protein Dn 96.2 0.049 1.1E-06 47.2 9.7 46 70-119 156-201 (306)
314 TIGR02760 TraI_TIGR conjugativ 96.2 0.028 6.1E-07 60.2 9.6 63 54-118 1018-1085(1960)
315 PRK14952 DNA polymerase III su 96.1 0.063 1.4E-06 50.7 10.9 39 174-213 117-155 (584)
316 PRK04195 replication factor C 96.1 0.051 1.1E-06 50.4 10.3 18 70-87 39-56 (482)
317 PRK06871 DNA polymerase III su 96.1 0.058 1.3E-06 47.1 10.0 33 56-88 3-42 (325)
318 PRK09112 DNA polymerase III su 96.1 0.08 1.7E-06 46.8 11.0 40 174-214 140-179 (351)
319 PRK06645 DNA polymerase III su 96.1 0.094 2E-06 48.7 11.8 19 71-89 44-62 (507)
320 PTZ00293 thymidine kinase; Pro 96.1 0.056 1.2E-06 43.9 9.1 39 70-111 4-42 (211)
321 PRK14951 DNA polymerase III su 96.1 0.048 1E-06 51.7 10.0 39 174-213 123-161 (618)
322 PHA03333 putative ATPase subun 96.1 0.21 4.6E-06 47.5 13.9 148 56-216 170-332 (752)
323 COG0593 DnaA ATPase involved i 96.1 0.043 9.3E-07 49.1 9.1 47 175-221 175-223 (408)
324 PRK05298 excinuclease ABC subu 96.1 0.08 1.7E-06 50.9 11.6 67 55-127 12-83 (652)
325 KOG0991 Replication factor C, 96.1 0.013 2.8E-07 47.9 5.2 39 173-212 111-149 (333)
326 PRK08451 DNA polymerase III su 96.1 0.049 1.1E-06 50.7 9.8 39 174-213 116-154 (535)
327 PRK06964 DNA polymerase III su 96.1 0.066 1.4E-06 47.1 10.0 33 56-88 2-39 (342)
328 PRK07471 DNA polymerase III su 96.0 0.13 2.8E-06 45.8 11.7 41 174-215 140-180 (365)
329 PRK09111 DNA polymerase III su 96.0 0.17 3.8E-06 48.0 13.2 40 173-213 130-169 (598)
330 PRK14969 DNA polymerase III su 96.0 0.052 1.1E-06 50.8 9.7 39 174-213 118-156 (527)
331 PRK13342 recombination factor 96.0 0.084 1.8E-06 47.9 10.8 18 71-88 37-54 (413)
332 PHA00729 NTP-binding motif con 96.0 0.043 9.4E-07 45.0 8.0 74 153-226 60-138 (226)
333 PF05729 NACHT: NACHT domain 96.0 0.058 1.3E-06 41.7 8.6 38 178-215 84-129 (166)
334 TIGR02525 plasmid_TraJ plasmid 96.0 0.024 5.1E-07 50.4 6.9 38 69-107 148-185 (372)
335 PRK07993 DNA polymerase III su 96.0 0.049 1.1E-06 47.8 8.8 33 56-88 3-42 (334)
336 PHA03372 DNA packaging termina 96.0 0.061 1.3E-06 50.1 9.6 127 71-216 203-337 (668)
337 TIGR03015 pepcterm_ATPase puta 95.9 0.28 6.2E-06 41.5 13.4 34 55-88 23-61 (269)
338 COG2909 MalT ATP-dependent tra 95.9 0.041 8.9E-07 52.9 8.6 45 174-218 128-172 (894)
339 PRK14959 DNA polymerase III su 95.9 0.078 1.7E-06 50.2 10.3 21 71-91 39-59 (624)
340 PRK04841 transcriptional regul 95.9 0.083 1.8E-06 52.9 11.3 44 174-217 120-163 (903)
341 PRK12726 flagellar biosynthesi 95.9 0.16 3.4E-06 45.2 11.4 36 70-108 206-241 (407)
342 PRK05563 DNA polymerase III su 95.9 0.062 1.3E-06 50.7 9.6 20 71-90 39-58 (559)
343 PRK14963 DNA polymerase III su 95.8 0.083 1.8E-06 49.1 10.1 16 73-88 39-54 (504)
344 TIGR03499 FlhF flagellar biosy 95.8 0.042 9E-07 47.1 7.6 20 70-89 194-213 (282)
345 PRK13851 type IV secretion sys 95.8 0.02 4.4E-07 50.3 5.7 45 65-113 157-201 (344)
346 PF01695 IstB_IS21: IstB-like 95.8 0.023 5.1E-07 45.1 5.6 47 68-118 45-91 (178)
347 PF03237 Terminase_6: Terminas 95.8 0.28 6.1E-06 43.4 13.2 145 74-230 1-153 (384)
348 PF06745 KaiC: KaiC; InterPro 95.7 0.058 1.3E-06 44.5 8.1 134 69-216 18-160 (226)
349 PF03796 DnaB_C: DnaB-like hel 95.7 0.056 1.2E-06 45.7 8.1 138 69-215 18-179 (259)
350 PRK12900 secA preprotein trans 95.7 0.032 6.8E-07 54.9 7.2 88 207-297 534-623 (1025)
351 PRK10867 signal recognition pa 95.7 0.16 3.4E-06 46.2 11.1 86 72-162 102-195 (433)
352 COG3973 Superfamily I DNA and 95.7 0.072 1.6E-06 49.4 8.9 88 39-126 188-285 (747)
353 PRK13341 recombination factor 95.7 0.058 1.3E-06 52.3 8.8 39 175-218 109-147 (725)
354 TIGR00959 ffh signal recogniti 95.6 0.18 3.8E-06 45.8 11.2 86 72-162 101-194 (428)
355 cd00984 DnaB_C DnaB helicase C 95.6 0.12 2.6E-06 43.1 9.6 41 67-109 10-50 (242)
356 COG2805 PilT Tfp pilus assembl 95.6 0.02 4.4E-07 48.5 4.6 25 72-97 127-151 (353)
357 TIGR03878 thermo_KaiC_2 KaiC d 95.6 0.11 2.4E-06 43.9 9.2 38 69-109 35-72 (259)
358 PRK13900 type IV secretion sys 95.6 0.059 1.3E-06 47.3 7.7 44 66-113 156-199 (332)
359 cd01121 Sms Sms (bacterial rad 95.6 0.17 3.8E-06 45.1 10.7 92 69-189 81-172 (372)
360 PRK12724 flagellar biosynthesi 95.6 0.25 5.4E-06 44.5 11.6 126 71-227 224-356 (432)
361 PRK04328 hypothetical protein; 95.5 0.16 3.4E-06 42.7 10.0 53 69-125 22-74 (249)
362 PRK07414 cob(I)yrinic acid a,c 95.5 0.24 5.1E-06 39.1 10.2 136 72-225 23-167 (178)
363 PRK07940 DNA polymerase III su 95.5 0.16 3.5E-06 45.7 10.5 41 174-215 116-156 (394)
364 KOG0730 AAA+-type ATPase [Post 95.5 0.13 2.8E-06 48.2 9.9 57 28-87 426-485 (693)
365 PRK06904 replicative DNA helic 95.5 0.33 7.2E-06 44.8 12.6 143 67-214 218-382 (472)
366 TIGR02524 dot_icm_DotB Dot/Icm 95.5 0.039 8.5E-07 48.9 6.3 27 69-96 133-159 (358)
367 KOG0331 ATP-dependent RNA heli 95.5 0.097 2.1E-06 48.1 8.9 83 88-181 329-415 (519)
368 PRK14950 DNA polymerase III su 95.4 0.19 4.1E-06 47.8 11.2 38 174-212 119-156 (585)
369 PRK05896 DNA polymerase III su 95.4 0.16 3.6E-06 47.8 10.4 39 174-213 118-156 (605)
370 COG0552 FtsY Signal recognitio 95.4 0.32 7E-06 42.1 11.3 130 72-227 141-280 (340)
371 KOG2170 ATPase of the AAA+ sup 95.4 0.063 1.4E-06 45.6 6.9 50 175-225 178-234 (344)
372 PRK03992 proteasome-activating 95.4 0.11 2.4E-06 46.8 8.9 53 32-87 127-182 (389)
373 TIGR03600 phage_DnaB phage rep 95.4 0.15 3.3E-06 46.4 10.0 144 66-215 190-353 (421)
374 COG0466 Lon ATP-dependent Lon 95.4 0.073 1.6E-06 50.4 7.8 108 56-203 328-445 (782)
375 PRK14954 DNA polymerase III su 95.3 0.18 3.9E-06 48.1 10.6 40 173-213 125-164 (620)
376 TIGR00767 rho transcription te 95.3 0.2 4.4E-06 44.8 10.2 31 67-98 165-195 (415)
377 KOG1133 Helicase of the DEAD s 95.3 0.031 6.8E-07 52.4 5.3 41 55-95 15-59 (821)
378 PTZ00454 26S protease regulato 95.3 0.14 3E-06 46.2 9.4 55 30-87 139-196 (398)
379 TIGR01243 CDC48 AAA family ATP 95.3 0.11 2.3E-06 51.0 9.4 53 31-86 173-228 (733)
380 cd03115 SRP The signal recogni 95.3 0.7 1.5E-05 36.2 12.5 17 73-89 3-19 (173)
381 COG2109 BtuR ATP:corrinoid ade 95.3 0.32 6.9E-06 38.5 10.0 142 73-226 31-175 (198)
382 TIGR01243 CDC48 AAA family ATP 95.3 0.14 3E-06 50.2 9.9 54 32-87 449-504 (733)
383 PRK06647 DNA polymerase III su 95.2 0.16 3.5E-06 47.9 10.0 38 173-211 117-154 (563)
384 COG2804 PulE Type II secretory 95.2 0.053 1.1E-06 49.4 6.4 41 57-98 243-285 (500)
385 TIGR02868 CydC thiol reductant 95.2 0.043 9.3E-07 51.5 6.1 20 67-86 358-377 (529)
386 PF03969 AFG1_ATPase: AFG1-lik 95.2 0.46 1E-05 42.2 12.1 109 70-219 62-171 (362)
387 PRK06620 hypothetical protein; 95.2 0.081 1.8E-06 43.4 6.9 16 71-86 45-60 (214)
388 PRK09354 recA recombinase A; P 95.1 0.073 1.6E-06 46.8 6.8 43 70-115 60-102 (349)
389 PRK06090 DNA polymerase III su 95.1 0.43 9.3E-06 41.6 11.5 34 55-88 3-43 (319)
390 COG1132 MdlB ABC-type multidru 95.1 0.073 1.6E-06 50.5 7.4 41 173-213 481-521 (567)
391 COG4962 CpaF Flp pilus assembl 95.1 0.061 1.3E-06 46.7 6.1 60 52-115 154-214 (355)
392 TIGR02012 tigrfam_recA protein 95.1 0.081 1.7E-06 46.0 7.0 44 69-115 54-97 (321)
393 TIGR03689 pup_AAA proteasome A 95.1 0.15 3.2E-06 47.3 9.0 53 31-86 177-232 (512)
394 KOG2028 ATPase related to the 95.1 0.082 1.8E-06 46.2 6.8 50 71-123 163-212 (554)
395 TIGR02397 dnaX_nterm DNA polym 95.1 0.18 3.9E-06 44.7 9.4 17 72-88 38-54 (355)
396 TIGR00580 mfd transcription-re 95.1 0.2 4.2E-06 50.1 10.4 79 101-187 660-742 (926)
397 PRK06067 flagellar accessory p 95.1 0.59 1.3E-05 38.8 12.0 52 69-124 24-75 (234)
398 TIGR01241 FtsH_fam ATP-depende 95.0 0.14 3E-06 47.7 8.8 55 30-87 49-105 (495)
399 PRK13764 ATPase; Provisional 95.0 0.059 1.3E-06 50.8 6.2 27 69-96 256-282 (602)
400 COG5008 PilU Tfp pilus assembl 94.9 0.026 5.7E-07 47.0 3.3 19 70-88 127-145 (375)
401 KOG0058 Peptide exporter, ABC 94.9 0.11 2.4E-06 49.2 7.6 40 173-212 620-659 (716)
402 PLN03187 meiotic recombination 94.8 0.18 3.8E-06 44.5 8.4 50 6-55 5-54 (344)
403 cd01126 TraG_VirD4 The TraG/Tr 94.8 0.028 6E-07 50.5 3.6 48 72-124 1-48 (384)
404 PRK08058 DNA polymerase III su 94.8 0.42 9.2E-06 42.0 10.8 40 174-214 109-148 (329)
405 PF01637 Arch_ATPase: Archaeal 94.8 0.19 4.2E-06 41.1 8.4 40 177-216 120-165 (234)
406 cd00983 recA RecA is a bacter 94.8 0.082 1.8E-06 46.0 6.1 43 70-115 55-97 (325)
407 COG1197 Mfd Transcription-repa 94.8 0.4 8.8E-06 48.1 11.4 143 31-188 710-886 (1139)
408 PF00437 T2SE: Type II/IV secr 94.7 0.056 1.2E-06 46.0 5.0 44 67-113 124-167 (270)
409 PRK14948 DNA polymerase III su 94.7 0.25 5.3E-06 47.2 9.6 19 71-89 39-57 (620)
410 TIGR02655 circ_KaiC circadian 94.7 0.38 8.2E-06 44.7 10.7 53 69-125 262-314 (484)
411 TIGR02237 recomb_radB DNA repa 94.6 0.28 6E-06 39.9 8.8 39 69-110 11-49 (209)
412 COG1221 PspF Transcriptional r 94.6 0.18 3.9E-06 45.1 7.9 40 68-109 99-139 (403)
413 TIGR00635 ruvB Holliday juncti 94.6 0.12 2.5E-06 44.9 6.7 17 71-87 31-47 (305)
414 PRK09165 replicative DNA helic 94.5 0.43 9.3E-06 44.4 10.6 145 69-219 216-395 (497)
415 KOG2228 Origin recognition com 94.5 1.1 2.4E-05 39.0 12.1 57 160-216 122-181 (408)
416 PF02534 T4SS-DNA_transf: Type 94.5 0.052 1.1E-06 50.1 4.6 50 71-125 45-94 (469)
417 PRK08840 replicative DNA helic 94.5 0.71 1.5E-05 42.5 11.9 144 66-214 213-377 (464)
418 PRK14971 DNA polymerase III su 94.5 0.58 1.2E-05 44.7 11.6 40 173-213 119-158 (614)
419 cd01128 rho_factor Transcripti 94.5 0.21 4.6E-06 41.9 7.8 30 67-97 13-42 (249)
420 PRK08506 replicative DNA helic 94.4 0.41 8.9E-06 44.3 10.3 141 68-215 190-351 (472)
421 TIGR00665 DnaB replicative DNA 94.4 0.44 9.5E-06 43.6 10.4 142 67-215 192-354 (434)
422 PRK10416 signal recognition pa 94.4 1.7 3.7E-05 38.0 13.5 35 71-108 115-149 (318)
423 KOG0737 AAA+-type ATPase [Post 94.4 0.61 1.3E-05 40.9 10.4 58 31-88 87-145 (386)
424 PRK07004 replicative DNA helic 94.4 0.39 8.4E-06 44.3 9.9 142 67-214 210-372 (460)
425 KOG1016 Predicted DNA helicase 94.4 0.99 2.2E-05 43.5 12.4 181 40-224 247-481 (1387)
426 TIGR00763 lon ATP-dependent pr 94.3 0.27 5.8E-06 48.5 9.3 18 70-87 347-364 (775)
427 PRK06305 DNA polymerase III su 94.3 0.49 1.1E-05 43.5 10.5 39 174-213 120-158 (451)
428 PRK09376 rho transcription ter 94.3 0.26 5.6E-06 44.0 8.2 67 57-125 153-222 (416)
429 PRK14953 DNA polymerase III su 94.3 0.43 9.3E-06 44.3 10.0 37 174-211 118-154 (486)
430 PRK13897 type IV secretion sys 94.3 0.066 1.4E-06 50.7 4.8 49 71-124 159-207 (606)
431 PRK08006 replicative DNA helic 94.3 1 2.2E-05 41.6 12.4 144 67-215 221-385 (471)
432 cd01130 VirB11-like_ATPase Typ 94.2 0.099 2.1E-06 41.8 5.2 32 55-86 9-41 (186)
433 TIGR02858 spore_III_AA stage I 94.2 1 2.3E-05 38.3 11.5 16 71-86 112-127 (270)
434 cd01393 recA_like RecA is a b 94.2 0.16 3.5E-06 41.8 6.6 43 69-111 18-63 (226)
435 KOG1131 RNA polymerase II tran 94.2 0.32 6.8E-06 44.5 8.5 74 51-124 12-90 (755)
436 KOG0742 AAA+-type ATPase [Post 94.2 0.26 5.7E-06 43.8 7.8 16 71-86 385-400 (630)
437 PRK11034 clpA ATP-dependent Cl 94.2 0.55 1.2E-05 45.9 10.9 19 70-88 207-225 (758)
438 KOG0732 AAA+-type ATPase conta 94.2 0.19 4.1E-06 50.0 7.7 147 29-217 258-415 (1080)
439 PRK10689 transcription-repair 94.2 0.77 1.7E-05 47.1 12.3 79 101-187 809-891 (1147)
440 KOG0741 AAA+-type ATPase [Post 94.1 0.56 1.2E-05 43.2 10.0 69 38-111 494-574 (744)
441 KOG2004 Mitochondrial ATP-depe 94.1 0.55 1.2E-05 44.8 10.2 108 56-203 416-533 (906)
442 KOG0744 AAA+-type ATPase [Post 94.1 0.46 9.9E-06 41.0 8.9 66 70-136 177-256 (423)
443 PF12846 AAA_10: AAA-like doma 94.1 0.074 1.6E-06 45.7 4.4 41 71-114 2-42 (304)
444 TIGR02639 ClpA ATP-dependent C 94.0 0.82 1.8E-05 44.8 11.9 17 71-87 204-220 (731)
445 PRK05748 replicative DNA helic 94.0 0.61 1.3E-05 42.9 10.5 143 67-215 200-364 (448)
446 PRK00080 ruvB Holliday junctio 94.0 0.11 2.5E-06 45.5 5.5 18 71-88 52-69 (328)
447 PRK07133 DNA polymerase III su 93.9 0.45 9.8E-06 45.9 9.7 39 174-213 117-155 (725)
448 CHL00176 ftsH cell division pr 93.9 0.41 8.8E-06 45.9 9.4 55 30-87 177-233 (638)
449 COG1219 ClpX ATP-dependent pro 93.8 0.05 1.1E-06 46.6 2.8 57 32-88 43-115 (408)
450 COG1223 Predicted ATPase (AAA+ 93.8 0.55 1.2E-05 39.3 8.7 47 175-221 210-267 (368)
451 PRK04537 ATP-dependent RNA hel 93.8 0.52 1.1E-05 44.7 9.8 75 100-184 256-334 (572)
452 PRK08760 replicative DNA helic 93.8 0.62 1.3E-05 43.1 10.1 143 67-215 226-388 (476)
453 KOG0333 U5 snRNP-like RNA heli 93.8 0.32 7E-06 44.5 7.8 71 100-180 516-590 (673)
454 cd01129 PulE-GspE PulE/GspE Th 93.7 0.21 4.5E-06 42.4 6.4 46 47-96 58-105 (264)
455 TIGR03880 KaiC_arch_3 KaiC dom 93.7 0.71 1.5E-05 38.0 9.5 52 69-124 15-66 (224)
456 TIGR03819 heli_sec_ATPase heli 93.7 0.27 5.8E-06 43.3 7.3 63 45-113 154-217 (340)
457 PRK09087 hypothetical protein; 93.7 0.19 4.1E-06 41.6 5.9 40 177-218 89-129 (226)
458 PF01443 Viral_helicase1: Vira 93.6 0.1 2.2E-06 43.2 4.3 14 73-86 1-14 (234)
459 KOG0344 ATP-dependent RNA heli 93.6 1.3 2.9E-05 41.0 11.5 97 79-185 366-466 (593)
460 KOG0739 AAA+-type ATPase [Post 93.6 3.1 6.8E-05 35.7 12.8 154 29-234 126-296 (439)
461 PLN00020 ribulose bisphosphate 93.6 0.16 3.4E-06 44.9 5.4 17 71-87 149-165 (413)
462 COG0556 UvrB Helicase subunit 93.5 0.86 1.9E-05 42.0 10.1 111 101-224 446-565 (663)
463 TIGR02533 type_II_gspE general 93.5 0.19 4.1E-06 46.5 6.3 47 47-97 220-268 (486)
464 TIGR00416 sms DNA repair prote 93.5 0.93 2E-05 41.7 10.6 52 69-124 93-144 (454)
465 COG0630 VirB11 Type IV secreto 93.5 0.16 3.5E-06 44.2 5.4 53 56-112 128-181 (312)
466 COG0210 UvrD Superfamily I DNA 93.5 0.26 5.7E-06 47.6 7.4 70 55-126 2-72 (655)
467 TIGR02788 VirB11 P-type DNA tr 93.4 0.18 4E-06 43.8 5.7 20 67-86 141-160 (308)
468 KOG1513 Nuclear helicase MOP-3 93.4 0.13 2.8E-06 49.3 4.9 157 53-216 262-454 (1300)
469 PRK05595 replicative DNA helic 93.4 1.2 2.6E-05 40.9 11.2 140 69-215 200-360 (444)
470 TIGR00631 uvrb excinuclease AB 93.4 3.5 7.6E-05 39.8 14.7 114 100-223 441-560 (655)
471 TIGR02203 MsbA_lipidA lipid A 93.4 0.14 3E-06 48.6 5.3 41 173-213 485-525 (571)
472 PRK07399 DNA polymerase III su 93.4 1.5 3.2E-05 38.3 11.2 53 160-215 110-162 (314)
473 PRK12608 transcription termina 93.3 0.87 1.9E-05 40.5 9.7 39 58-97 118-159 (380)
474 PRK10436 hypothetical protein; 93.3 0.22 4.8E-06 45.7 6.3 47 47-97 196-244 (462)
475 PRK11192 ATP-dependent RNA hel 93.3 0.64 1.4E-05 42.5 9.4 72 100-181 244-319 (434)
476 COG2812 DnaX DNA polymerase II 93.3 0.21 4.6E-06 46.2 6.1 39 173-212 117-155 (515)
477 TIGR03346 chaperone_ClpB ATP-d 93.2 1 2.3E-05 44.9 11.2 18 71-88 195-212 (852)
478 KOG0734 AAA+-type ATPase conta 93.2 1.1 2.4E-05 41.5 10.1 44 174-217 395-448 (752)
479 PRK13850 type IV secretion sys 93.2 0.13 2.9E-06 49.3 4.8 49 71-124 140-188 (670)
480 COG3267 ExeA Type II secretory 93.1 1 2.2E-05 37.6 9.2 30 65-95 45-75 (269)
481 PRK04837 ATP-dependent RNA hel 93.1 0.68 1.5E-05 42.2 9.2 74 101-184 255-332 (423)
482 KOG1969 DNA replication checkp 93.1 0.25 5.4E-06 47.1 6.2 32 56-87 306-343 (877)
483 TIGR02640 gas_vesic_GvpN gas v 93.1 0.11 2.4E-06 44.0 3.7 26 63-88 14-39 (262)
484 PRK14970 DNA polymerase III su 93.0 1.8 4E-05 38.5 11.7 18 71-88 40-57 (367)
485 cd00079 HELICc Helicase superf 93.0 0.38 8.3E-06 35.4 6.3 38 258-295 12-51 (131)
486 COG1074 RecB ATP-dependent exo 92.9 0.2 4.3E-06 51.5 5.9 57 68-124 14-72 (1139)
487 COG3972 Superfamily I DNA and 92.8 1.1 2.4E-05 41.0 9.6 80 43-125 151-230 (660)
488 TIGR03743 SXT_TraD conjugative 92.8 0.36 7.9E-06 46.2 7.1 53 71-126 177-231 (634)
489 cd01131 PilT Pilus retraction 92.7 0.2 4.3E-06 40.5 4.6 38 73-112 4-41 (198)
490 PRK10590 ATP-dependent RNA hel 92.7 0.9 2E-05 41.8 9.4 73 101-183 245-321 (456)
491 PRK05917 DNA polymerase III su 92.7 2.9 6.2E-05 35.9 11.7 42 174-216 94-135 (290)
492 COG0378 HypB Ni2+-binding GTPa 92.6 2.9 6.3E-05 33.5 10.8 52 176-227 144-196 (202)
493 TIGR01420 pilT_fam pilus retra 92.6 0.26 5.6E-06 43.6 5.5 43 69-113 121-163 (343)
494 TIGR02204 MsbA_rel ABC transpo 92.6 0.18 3.8E-06 47.9 4.8 42 174-215 493-534 (576)
495 PF12775 AAA_7: P-loop contain 92.6 0.095 2.1E-06 44.7 2.7 20 67-86 30-49 (272)
496 TIGR02538 type_IV_pilB type IV 92.6 0.32 6.9E-06 46.1 6.4 46 47-96 294-341 (564)
497 PRK05636 replicative DNA helic 92.5 0.8 1.7E-05 42.7 8.8 138 70-214 265-423 (505)
498 PRK10865 protein disaggregatio 92.5 1.3 2.9E-05 44.1 10.8 18 71-88 200-217 (857)
499 TIGR03345 VI_ClpV1 type VI sec 92.4 0.72 1.6E-05 45.9 8.8 17 72-88 598-614 (852)
500 PF13481 AAA_25: AAA domain; P 92.4 0.44 9.6E-06 38.0 6.2 57 69-126 31-94 (193)
No 1
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.2e-50 Score=322.43 Aligned_cols=288 Identities=72% Similarity=1.097 Sum_probs=276.1
Q ss_pred cCCCCCCCCCcceeecccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHH
Q 022383 10 RGGGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL 89 (298)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~ 89 (298)
|..+....++..++|.++..+++++|+++||.++++++.+..||+.|+..|+.+++++++|+|++.++..|+|||.+|.+
T Consensus 4 r~~~~~~~~~~~~feTs~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si 83 (400)
T KOG0328|consen 4 RELFTMEDMDTVEFETSEKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSI 83 (400)
T ss_pred hhhcccccccceeEeeccCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEe
Confidence 44566778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhcc
Q 022383 90 TVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK 169 (298)
Q Consensus 90 ~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~ 169 (298)
.++..+.-..+..++++++||+||+.|+.+.+..++...++++..+.||.+..+..+.+..+++++.+||+++..+++.+
T Consensus 84 ~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~ 163 (400)
T KOG0328|consen 84 SVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRR 163 (400)
T ss_pred eeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhc
Confidence 99998887777789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEE
Q 022383 170 TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQF 249 (298)
Q Consensus 170 ~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 249 (298)
.+..+.++++|+||+|.|++.+|..++-.+.+++|+..|++++|||+|.++.+....++.+|+.+.+.+++.+..++.++
T Consensus 164 ~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf 243 (400)
T KOG0328|consen 164 SLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQF 243 (400)
T ss_pred cccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 250 FVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 250 ~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
++.++.++||.+.+.++.......+++|||||+..+.++.+.+++..+
T Consensus 244 ~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nf 291 (400)
T KOG0328|consen 244 FVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANF 291 (400)
T ss_pred eeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCc
Confidence 999999999999999999999889999999999999999999987654
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-49 Score=331.07 Aligned_cols=268 Identities=30% Similarity=0.487 Sum_probs=257.0
Q ss_pred CccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEc
Q 022383 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (298)
Q Consensus 29 ~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (298)
.+...+|.+|++++.+.+++.+.||..|+++|++++|.++.|+|++..|.||||||.+|++|+++++...+..++++|++
T Consensus 57 ~e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLt 136 (476)
T KOG0330|consen 57 DESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLT 136 (476)
T ss_pred hhhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEec
Confidence 45667999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred CcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc-cCccCCCccEEEechhhHh
Q 022383 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEM 187 (298)
Q Consensus 109 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~-~~~~~~~l~~vViDE~h~~ 187 (298)
|||||+.|+.++++.++...|+++..+.||.+...+...+...++|+|+||++|...+.+ +.+++..++++|+||||.+
T Consensus 137 PtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrl 216 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRL 216 (476)
T ss_pred CcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhh
Confidence 999999999999999999999999999999999999999999999999999999999985 8899999999999999999
Q ss_pred hccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHH
Q 022383 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267 (298)
Q Consensus 188 ~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll 267 (298)
++..|...+..|++.+|...|.+++|||++..+..+....+.+|..+.+.....+.+.+.|.|..++... |...+..++
T Consensus 217 Ld~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~-K~~yLV~ll 295 (476)
T KOG0330|consen 217 LDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKD-KDTYLVYLL 295 (476)
T ss_pred hhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccc-cchhHHHHH
Confidence 9999999999999999999999999999999999999999999999999888888899999999999887 999999999
Q ss_pred hhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 268 DTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 268 ~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
+...+..+||||++...+..++-.|+..|+
T Consensus 296 ~e~~g~s~iVF~~t~~tt~~la~~L~~lg~ 325 (476)
T KOG0330|consen 296 NELAGNSVIVFCNTCNTTRFLALLLRNLGF 325 (476)
T ss_pred HhhcCCcEEEEEeccchHHHHHHHHHhcCc
Confidence 998889999999999999999999998886
No 3
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.7e-47 Score=345.14 Aligned_cols=265 Identities=39% Similarity=0.625 Sum_probs=247.6
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhcc--CCCCeEEEEEcCc
Q 022383 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT--SSREVQALILSPT 110 (298)
Q Consensus 33 ~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~--~~~~~~~lil~p~ 110 (298)
.+|+++++++.+.+++.++||..|+|+|..++|.++.|+|+++.++||+|||++|++|+++.+.. ......+||++||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 68999999999999999999999999999999999999999999999999999999999999873 2222229999999
Q ss_pred HHHHHHHHHHHHHhhccC-CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhc
Q 022383 111 RELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (298)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~ 189 (298)
||||.|+.+.++++.... ++++..++||.+...+...+..+++|+|+||+++.++++.+.+++.++.++|+||||.|++
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 999999999999999988 7999999999999988888888899999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCcc--CcCCceEEEEEecCccchHHHHHHHH
Q 022383 190 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDEL--TLEGIKQFFVAVEREEWKFDTLCDLY 267 (298)
Q Consensus 190 ~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~k~~~l~~ll 267 (298)
.||.+.+..+++.++.+.|++++|||++..+..+...++.+|..+.+..... ....+.|.++.++....|...+..++
T Consensus 189 ~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll 268 (513)
T COG0513 189 MGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLL 268 (513)
T ss_pred CCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888875555 78899999999998766999999999
Q ss_pred hhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 268 DTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 268 ~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
+.....++||||+|+..|+.++..|+..|+
T Consensus 269 ~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~ 298 (513)
T COG0513 269 KDEDEGRVIVFVRTKRLVEELAESLRKRGF 298 (513)
T ss_pred hcCCCCeEEEEeCcHHHHHHHHHHHHHCCC
Confidence 988888999999999999999999999875
No 4
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-47 Score=338.76 Aligned_cols=262 Identities=31% Similarity=0.541 Sum_probs=243.1
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhcc------CCCCeEEEEE
Q 022383 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT------SSREVQALIL 107 (298)
Q Consensus 34 ~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~------~~~~~~~lil 107 (298)
.|++++|++.+..+|+..||+.|+|+|.+.||.+++|+|++..+.||||||++|++|++.++.. ...+|++|+|
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 6888999999999999999999999999999999999999999999999999999999999875 4557899999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHh
Q 022383 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (298)
Q Consensus 108 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~ 187 (298)
+||||||.|+...+++++...+++...++||.+...+...+.++++|+|+||++|..++..+.++++++.++|+||||.|
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrM 251 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRM 251 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccHHHHHHHHHhC-CCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCc--cCcCCceEEEEEecCccchHHHHH
Q 022383 188 LSRGFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE--LTLEGIKQFFVAVEREEWKFDTLC 264 (298)
Q Consensus 188 ~~~~~~~~i~~i~~~~-~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~k~~~l~ 264 (298)
++.+|..+++.|++.+ ++..|++++|||||..+..+...++.+|..+.+.... ....++.|....|+... |...+.
T Consensus 252 ldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~-K~~~l~ 330 (519)
T KOG0331|consen 252 LDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETA-KLRKLG 330 (519)
T ss_pred hccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHH-HHHHHH
Confidence 9999999999999999 5566899999999999999999999999998887543 55678999999999555 888888
Q ss_pred HHHhhC---CCCcEEEEecchhhHHHHHHHHhhhc
Q 022383 265 DLYDTL---TITQAVIFCNTKRKIYYSVFYFWIRW 296 (298)
Q Consensus 265 ~ll~~~---~~~k~lIf~~s~~~~~~l~~~L~~~~ 296 (298)
.++... ..+|+||||+|++.|+.++..|+..+
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~ 365 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKG 365 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcC
Confidence 888765 35699999999999999999999875
No 5
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.2e-45 Score=340.90 Aligned_cols=273 Identities=28% Similarity=0.416 Sum_probs=241.7
Q ss_pred ecccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC-----
Q 022383 24 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----- 98 (298)
Q Consensus 24 ~~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~----- 98 (298)
+....|+++.+|+++++++++.++|+++||..|+++|.++||.+++|+|+++++|||||||++|++|++.++...
T Consensus 121 ~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~ 200 (545)
T PTZ00110 121 AGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRY 200 (545)
T ss_pred cCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccC
Confidence 456678899999999999999999999999999999999999999999999999999999999999999876432
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccE
Q 022383 99 SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKL 178 (298)
Q Consensus 99 ~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~ 178 (298)
..++.+|||+||++||.|+.+.+++++...++++..++|+.....+...+..+++|+|+||++|.+++.....+++++++
T Consensus 201 ~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~ 280 (545)
T PTZ00110 201 GDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTY 280 (545)
T ss_pred CCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcE
Confidence 24678999999999999999999999988889999999999888888888889999999999999999988889999999
Q ss_pred EEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCC-CCEEEEecCCc-cCcCCceEEEEEecCc
Q 022383 179 LVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMT-DPVKILVKRDE-LTLEGIKQFFVAVERE 256 (298)
Q Consensus 179 vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~i~~~~~~~~~~ 256 (298)
||+||||++++++|...+..++..+++..|++++|||++..+..+...++. +|..+.+...+ .....+.+.+..++..
T Consensus 281 lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~ 360 (545)
T PTZ00110 281 LVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEH 360 (545)
T ss_pred EEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEech
Confidence 999999999999999999999999999999999999999999988887775 57777665443 2335677777777665
Q ss_pred cchHHHHHHHHhhC--CCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 257 EWKFDTLCDLYDTL--TITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 257 ~~k~~~l~~ll~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
+ |...+..++... ...++||||++++.|+.++..|+..|+
T Consensus 361 ~-k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~ 402 (545)
T PTZ00110 361 E-KRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGW 402 (545)
T ss_pred h-HHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCC
Confidence 5 888888888754 456999999999999999999987664
No 6
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.4e-45 Score=329.82 Aligned_cols=265 Identities=29% Similarity=0.392 Sum_probs=236.6
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC-------CCCeEE
Q 022383 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-------SREVQA 104 (298)
Q Consensus 32 ~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~-------~~~~~~ 104 (298)
..+|++++|++++.++|.++||..|+++|.++||.+++|+|++++||||+|||++|++|+++.+... ..++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 4689999999999999999999999999999999999999999999999999999999999887532 235789
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechh
Q 022383 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (298)
Q Consensus 105 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~ 184 (298)
|||+||++|+.|+.+.++.+....++++..++||.....+...+..+++|+|+||+++..++..+.+.+++++++|+|||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999998899999999998888777788888999999999999999988899999999999999
Q ss_pred hHhhccccHHHHHHHHHhCCC--CccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHH
Q 022383 185 DEMLSRGFKDQIYDVYRYLPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDT 262 (298)
Q Consensus 185 h~~~~~~~~~~i~~i~~~~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 262 (298)
|++++++|...+..+++.++. ..+.+++|||++..+..+....+.+|..+.+.........+.+.+....... |...
T Consensus 167 d~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~-k~~~ 245 (423)
T PRK04837 167 DRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEE-KMRL 245 (423)
T ss_pred HHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHH-HHHH
Confidence 999999999999999999874 4668999999999999888888889988887766655566777666555444 8888
Q ss_pred HHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 263 LCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 263 l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
+..+++.....++||||++++.|+.+++.|...|+
T Consensus 246 l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~ 280 (423)
T PRK04837 246 LQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGH 280 (423)
T ss_pred HHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCC
Confidence 98998877778999999999999999999988764
No 7
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.7e-45 Score=333.66 Aligned_cols=264 Identities=37% Similarity=0.589 Sum_probs=242.1
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 32 ~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
..+|++++|++.+.++|.++||..|+|+|.++++.+++|+|++++||||+|||++|++|+++.+......++++|++||+
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 35899999999999999999999999999999999999999999999999999999999999987665567899999999
Q ss_pred HHHHHHHHHHHHhhccC-CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc
Q 022383 112 ELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (298)
Q Consensus 112 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~ 190 (298)
+|+.|+.+.++.+.... ++++..++|+.+...+...+..+++|+|+||+++..++..+.+.++++++||+||+|++++.
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~ 162 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDM 162 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCc
Confidence 99999999999987654 68899999999988888888889999999999999999988888999999999999999999
Q ss_pred ccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhC
Q 022383 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (298)
Q Consensus 191 ~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~ 270 (298)
+|...+..+++.++...|++++|||+++.+..+...++.+|..+.+.... ....+.+.++.++..+ |...+..++...
T Consensus 163 g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~-k~~~l~~ll~~~ 240 (460)
T PRK11776 163 GFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDE-RLPALQRLLLHH 240 (460)
T ss_pred CcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHH-HHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999888776543 3456888888888777 999999999888
Q ss_pred CCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 271 TITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 271 ~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
...++||||++++.|+.+++.|+..|+
T Consensus 241 ~~~~~lVF~~t~~~~~~l~~~L~~~~~ 267 (460)
T PRK11776 241 QPESCVVFCNTKKECQEVADALNAQGF 267 (460)
T ss_pred CCCceEEEECCHHHHHHHHHHHHhCCC
Confidence 888999999999999999999988775
No 8
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=9.3e-45 Score=329.97 Aligned_cols=263 Identities=34% Similarity=0.540 Sum_probs=238.1
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCC------CCeEEEEE
Q 022383 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS------REVQALIL 107 (298)
Q Consensus 34 ~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~------~~~~~lil 107 (298)
+|++++|++++.++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+.... ..+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 699999999999999999999999999999999999999999999999999999999999875432 23589999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHh
Q 022383 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (298)
Q Consensus 108 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~ 187 (298)
+||++|+.|+.+.++.+....++++..++|+.+...+...+..+++|+|+||++|..++....+.++++++|||||+|++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999988899999999999888887788888999999999999999888889999999999999999
Q ss_pred hccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHH
Q 022383 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267 (298)
Q Consensus 188 ~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll 267 (298)
++++|...+..++..++...|++++|||+++.+..+...++.+|..+.+.........+.+.+..++... +...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~-k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKR-KRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999998888999988877666666667788877776655 777888888
Q ss_pred hhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 268 DTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 268 ~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
......++||||++++.|+.+++.|...|+
T Consensus 241 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~ 270 (456)
T PRK10590 241 GKGNWQQVLVFTRTKHGANHLAEQLNKDGI 270 (456)
T ss_pred HcCCCCcEEEEcCcHHHHHHHHHHHHHCCC
Confidence 877778999999999999999999987764
No 9
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1e-44 Score=337.77 Aligned_cols=265 Identities=32% Similarity=0.509 Sum_probs=243.0
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 32 ~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
..+|++++|++.++++|.++||..|+|+|.++|+.++.|+|++++||||+|||++|++|+++.+......+++|||+||+
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 45799999999999999999999999999999999999999999999999999999999999887665677999999999
Q ss_pred HHHHHHHHHHHHhhccC-CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc
Q 022383 112 ELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (298)
Q Consensus 112 ~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~ 190 (298)
+|+.|+.+.++.+.... ++.+..++|+.+...+...+..+++|+|+||+++.+++....++++++++||+||+|.|++.
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~ 164 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM 164 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhc
Confidence 99999999999887654 78899999999888888888889999999999999999988889999999999999999999
Q ss_pred ccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhC
Q 022383 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (298)
Q Consensus 191 ~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~ 270 (298)
+|...+..++..++...|++++|||+++.+..+...++.+|..+.+.........+.+.+..+.... |...+..++...
T Consensus 165 gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~-k~~~L~~~L~~~ 243 (629)
T PRK11634 165 GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR-KNEALVRFLEAE 243 (629)
T ss_pred ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhh-HHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999988887766666677888888777666 888999999887
Q ss_pred CCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 271 TITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 271 ~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
...++||||+|+..++.+++.|...|+
T Consensus 244 ~~~~~IVF~~tk~~a~~l~~~L~~~g~ 270 (629)
T PRK11634 244 DFDAAIIFVRTKNATLEVAEALERNGY 270 (629)
T ss_pred CCCCEEEEeccHHHHHHHHHHHHhCCC
Confidence 778999999999999999999998775
No 10
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2e-44 Score=333.85 Aligned_cols=264 Identities=31% Similarity=0.436 Sum_probs=235.9
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC-------CCCeEEE
Q 022383 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-------SREVQAL 105 (298)
Q Consensus 33 ~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~-------~~~~~~l 105 (298)
.+|++++|++.+.++|.++||..|+++|.++||.+++|+|+++++|||+|||++|++|+++.+... ...+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 479999999999999999999999999999999999999999999999999999999999987432 1246899
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhcc-CccCCCccEEEechh
Q 022383 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDES 184 (298)
Q Consensus 106 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~-~~~~~~l~~vViDE~ 184 (298)
||+||++|+.|+.+.+++++...++++..++|+.....+...+..+++|+|+||++|..++... .+.+..+++|||||+
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999998899999999999888877778888999999999999998764 577899999999999
Q ss_pred hHhhccccHHHHHHHHHhCCC--CccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHH
Q 022383 185 DEMLSRGFKDQIYDVYRYLPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDT 262 (298)
Q Consensus 185 h~~~~~~~~~~i~~i~~~~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~ 262 (298)
|++++++|...+..+++.++. ..|++++|||++..+..+...++.+|..+.+.........+.+.++...... |...
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~-k~~~ 247 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEE-KQTL 247 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHH-HHHH
Confidence 999999999999999999986 6899999999999999998888888887777655556666778777666555 8888
Q ss_pred HHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 263 LCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 263 l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
+..++......++||||||++.|+.+++.|...|+
T Consensus 248 L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~ 282 (572)
T PRK04537 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERHGY 282 (572)
T ss_pred HHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCC
Confidence 88888887778999999999999999999988764
No 11
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5e-44 Score=329.09 Aligned_cols=270 Identities=28% Similarity=0.474 Sum_probs=238.6
Q ss_pred eecccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhcc-----
Q 022383 23 FETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT----- 97 (298)
Q Consensus 23 ~~~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~----- 97 (298)
+.+...+.++.+|+++++++.+.++|.+.||..|+|+|.++||.+++|+|+++++|||+|||++|++|++.++..
T Consensus 111 ~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~ 190 (518)
T PLN00206 111 VKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGH 190 (518)
T ss_pred ecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccc
Confidence 345566789999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred --CCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCC
Q 022383 98 --SSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (298)
Q Consensus 98 --~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~ 175 (298)
...++++|||+||++|+.|+.+.++.+....+++...+.||.....+...+..+++|+|+||++|..++....+.+++
T Consensus 191 ~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~ 270 (518)
T PLN00206 191 PSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDN 270 (518)
T ss_pred ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchh
Confidence 224679999999999999999999999888888898999998888888888888999999999999999988889999
Q ss_pred ccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecC
Q 022383 176 IKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER 255 (298)
Q Consensus 176 l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 255 (298)
+++||+||||+|++++|...+..+++.++ +.|++++|||+++.+..+...++.++..+...........+.+.+..++.
T Consensus 271 v~~lViDEad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~ 349 (518)
T PLN00206 271 VSVLVLDEVDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVET 349 (518)
T ss_pred eeEEEeecHHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccc
Confidence 99999999999999999999999998885 68999999999999999998888888888876655555667777777776
Q ss_pred ccchHHHHHHHHhhCC--CCcEEEEecchhhHHHHHHHHhh
Q 022383 256 EEWKFDTLCDLYDTLT--ITQAVIFCNTKRKIYYSVFYFWI 294 (298)
Q Consensus 256 ~~~k~~~l~~ll~~~~--~~k~lIf~~s~~~~~~l~~~L~~ 294 (298)
.. |...+.+++.... ..++||||+++..|+.+++.|..
T Consensus 350 ~~-k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~ 389 (518)
T PLN00206 350 KQ-KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITV 389 (518)
T ss_pred hh-HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhh
Confidence 65 7777777776433 35899999999999999999875
No 12
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.4e-43 Score=321.30 Aligned_cols=264 Identities=28% Similarity=0.458 Sum_probs=239.0
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC----CCCeEEEEEcC
Q 022383 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQALILSP 109 (298)
Q Consensus 34 ~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~----~~~~~~lil~p 109 (298)
+|+++++++.+.++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|+++.+... ...+++||++|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 69999999999999999999999999999999999999999999999999999999999987532 23468999999
Q ss_pred cHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhc
Q 022383 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (298)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~ 189 (298)
|++|+.|+.+.++.+....++++..++|+.....+...+.++++|+|+||++|..++....+.+.++++|||||||++.+
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~ 161 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLD 161 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhC
Confidence 99999999999999999999999999999988887777788899999999999999999889999999999999999999
Q ss_pred cccHHHHHHHHHhCCCCccEEEEEeeCch-hHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHh
Q 022383 190 RGFKDQIYDVYRYLPPDLQVVLISATLPH-EILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (298)
Q Consensus 190 ~~~~~~i~~i~~~~~~~~~~v~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~ 268 (298)
++|...+..+....+...|++++|||++. .+..+...++.+|..+...........+.+.+..++....|...+..+++
T Consensus 162 ~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~~ 241 (434)
T PRK11192 162 MGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLLK 241 (434)
T ss_pred CCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHHh
Confidence 99999999999999988999999999975 57778888888898888776666667788888888776668889999988
Q ss_pred hCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 269 TLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 269 ~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
.....++||||++++.|+.+++.|+..|+
T Consensus 242 ~~~~~~~lVF~~s~~~~~~l~~~L~~~~~ 270 (434)
T PRK11192 242 QPEVTRSIVFVRTRERVHELAGWLRKAGI 270 (434)
T ss_pred cCCCCeEEEEeCChHHHHHHHHHHHhCCC
Confidence 76778999999999999999999988764
No 13
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-44 Score=311.23 Aligned_cols=265 Identities=28% Similarity=0.459 Sum_probs=243.2
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCC---CeEEEEEc
Q 022383 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR---EVQALILS 108 (298)
Q Consensus 32 ~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~---~~~~lil~ 108 (298)
..+|.+++|+..+++++..+||..|+|+|..+||..+-|+|+..||.||+|||.||++|++.++.=.+. ..++||||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 458999999999999999999999999999999999999999999999999999999999999854433 34999999
Q ss_pred CcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc-cCccCCCccEEEechhhHh
Q 022383 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEM 187 (298)
Q Consensus 109 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~-~~~~~~~l~~vViDE~h~~ 187 (298)
||++|+.|++.+.++++.+.++.++++.||.+...+...+..++||+|+||++|...+++ ..+++.++..+|+||||+|
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988 6899999999999999999
Q ss_pred hccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecC--ccchHHHHHH
Q 022383 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER--EEWKFDTLCD 265 (298)
Q Consensus 188 ~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~k~~~l~~ 265 (298)
++.+|.+.+..|++.+++++|.++||||++..+.++....+..|+.+.+++.........|.|+-+.+ +..+...+..
T Consensus 340 LeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~ 419 (691)
T KOG0338|consen 340 LEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLAS 419 (691)
T ss_pred HHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888888887776653 3457778888
Q ss_pred HHhhCCCCcEEEEecchhhHHHHHHHHhhhc
Q 022383 266 LYDTLTITQAVIFCNTKRKIYYSVFYFWIRW 296 (298)
Q Consensus 266 ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~ 296 (298)
++...-..+++||+.|++.|+.+.-.|--.|
T Consensus 420 l~~rtf~~~~ivFv~tKk~AHRl~IllGLlg 450 (691)
T KOG0338|consen 420 LITRTFQDRTIVFVRTKKQAHRLRILLGLLG 450 (691)
T ss_pred HHHHhcccceEEEEehHHHHHHHHHHHHHhh
Confidence 8886667899999999999999987764433
No 14
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-44 Score=303.13 Aligned_cols=264 Identities=28% Similarity=0.429 Sum_probs=233.3
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhcc------CCCCeEEEE
Q 022383 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT------SSREVQALI 106 (298)
Q Consensus 33 ~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~------~~~~~~~li 106 (298)
.+|++++|++.+++++.+.||+.|+.+|+.+||.++.|+|++..|.||||||.||++|+++.+.. ...++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 69999999999999999999999999999999999999999999999999999999999998743 345789999
Q ss_pred EcCcHHHHHHHHHHHHHhhccCC--ceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccC-ccCCCccEEEech
Q 022383 107 LSPTRELATQTEKVILAIGDFIN--IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT-LRTRAIKLLVLDE 183 (298)
Q Consensus 107 l~p~~~l~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~-~~~~~l~~vViDE 183 (298)
++||+|||+|++..+.++....+ +++.-+.++.+.......+.+.++|+|+||.++..++..+. ..+..+.++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999998876543 45555555555555556677889999999999999998865 6789999999999
Q ss_pred hhHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccC-cCCceEEEEEecCccchHHH
Q 022383 184 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELT-LEGIKQFFVAVEREEWKFDT 262 (298)
Q Consensus 184 ~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~k~~~ 262 (298)
||.+++.||.+++..+.+.+|+..|.++||||++.++..+-..++.+|..+.....+.. ...+.|+++.|..++ |.-.
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~D-Kfll 257 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEED-KFLL 257 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccch-hHHH
Confidence 99999999999999999999999999999999999999999999999999877655443 366889999999555 9999
Q ss_pred HHHHHhhC-CCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 263 LCDLYDTL-TITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 263 l~~ll~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
++.+++.. -.+|.|||+||...|..+.-+|...|+
T Consensus 258 lyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGi 293 (569)
T KOG0346|consen 258 LYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGI 293 (569)
T ss_pred HHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCc
Confidence 99998843 457999999999999999999998876
No 15
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=3.3e-42 Score=309.88 Aligned_cols=267 Identities=63% Similarity=1.042 Sum_probs=241.0
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCc
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (298)
...+|+++++++.+.++|.++||..|+++|.++++.+.+|+|+++++|||+|||++|++|++..+.....+.++||++|+
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt 105 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPT 105 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCC
Confidence 45799999999999999999999999999999999999999999999999999999999999988765567789999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc
Q 022383 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (298)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~ 190 (298)
++|+.|+.+.++.++...++.+..+.|+.........+..+++|+|+||+++..++......++++++|||||+|++.++
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~ 185 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSR 185 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhc
Confidence 99999999999999888888888889998877777777788999999999999999888888999999999999999999
Q ss_pred ccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhC
Q 022383 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (298)
Q Consensus 191 ~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~ 270 (298)
++...+..+++.++++.|++++|||+++....+...++.+|..+.+........++.+.+..++....+...+..+++..
T Consensus 186 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (401)
T PTZ00424 186 GFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETL 265 (401)
T ss_pred chHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999888888888888888776666667778888888877666778888888877
Q ss_pred CCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 271 TITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 271 ~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
...++||||++++.|+.+++.|+..++
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~ 292 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDF 292 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCC
Confidence 778999999999999999999987764
No 16
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-43 Score=308.65 Aligned_cols=267 Identities=28% Similarity=0.452 Sum_probs=244.3
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhcc----CCCCeEEE
Q 022383 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT----SSREVQAL 105 (298)
Q Consensus 30 ~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~----~~~~~~~l 105 (298)
..+..|.+|+|+..++++|++.+|..++.+|+.+||..+.|+|++-.|.||||||+||++|+++++.. ...|.-+|
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGal 145 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGAL 145 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeE
Confidence 34569999999999999999999999999999999999999999999999999999999999998743 23566899
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc-cCccCCCccEEEechh
Q 022383 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDES 184 (298)
Q Consensus 106 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~-~~~~~~~l~~vViDE~ 184 (298)
||+|||+||.|+++.+.++++.+++..+++.||.....+...+ ++++|+||||++|+..+.+ ..++..++.++|+|||
T Consensus 146 IISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEA 224 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEA 224 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccH
Confidence 9999999999999999999999999999999998877666655 4579999999999998877 5788899999999999
Q ss_pred hHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEec--CCccCcCCceEEEEEecCccchHHH
Q 022383 185 DEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK--RDELTLEGIKQFFVAVEREEWKFDT 262 (298)
Q Consensus 185 h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~k~~~ 262 (298)
|++++.||...+..|+.++|+.+|.++||||.+..+.++++..+.+|..+.+. ....++.+..|+|+.++..+ |++.
T Consensus 225 DR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~-Ki~~ 303 (758)
T KOG0343|consen 225 DRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLED-KIDM 303 (758)
T ss_pred HHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhh-HHHH
Confidence 99999999999999999999999999999999999999999999999887765 33567788999999999888 9999
Q ss_pred HHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcCC
Q 022383 263 LCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWIG 298 (298)
Q Consensus 263 l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~ 298 (298)
+..+++.+...|.|||+.|++++..+++.+.+.-+|
T Consensus 304 L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg 339 (758)
T KOG0343|consen 304 LWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPG 339 (758)
T ss_pred HHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999876543
No 17
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-45 Score=297.26 Aligned_cols=264 Identities=35% Similarity=0.597 Sum_probs=251.9
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 32 ~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
...|+++.|..+++....+.||+.|+|+|.+++|..+.|+|++..|..|+|||.+|.+|+++.+.......+++|++|++
T Consensus 84 G~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtr 163 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTR 163 (459)
T ss_pred CccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecc
Confidence 35899999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc
Q 022383 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (298)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~ 191 (298)
+||.|+...++.+++..++.+....||++..+.+-.+.+..+++|+||++++.+...+--.+++..++|+||||.+++..
T Consensus 164 elALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~ 243 (459)
T KOG0326|consen 164 ELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVD 243 (459)
T ss_pred hhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchh
Confidence 99999999999999999999999999999998888888999999999999999999998899999999999999999999
Q ss_pred cHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhCC
Q 022383 192 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT 271 (298)
Q Consensus 192 ~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~ 271 (298)
|...++.++..+|++.|++++|||+|-.+..+...++.+|..+..- ++.++.++.|+|.++.+.. |...+..++....
T Consensus 244 F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e~q-KvhCLntLfskLq 321 (459)
T KOG0326|consen 244 FQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVEERQ-KVHCLNTLFSKLQ 321 (459)
T ss_pred hhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeechhh-hhhhHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998866 5688899999999999988 9999999999888
Q ss_pred CCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 272 ITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 272 ~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
..+.||||||.+.+|.+|+.+-+.|+
T Consensus 322 INQsIIFCNS~~rVELLAkKITelGy 347 (459)
T KOG0326|consen 322 INQSIIFCNSTNRVELLAKKITELGY 347 (459)
T ss_pred ccceEEEeccchHhHHHHHHHHhccc
Confidence 89999999999999999999877764
No 18
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.8e-42 Score=314.78 Aligned_cols=265 Identities=27% Similarity=0.458 Sum_probs=234.6
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCC-------CCeEE
Q 022383 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-------REVQA 104 (298)
Q Consensus 32 ~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~-------~~~~~ 104 (298)
...|.+++|++.+.++|.++||..|+++|.++|+.+.+|+|+++++|||+|||++|++|+++.+.... ..+++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 45788999999999999999999999999999999999999999999999999999999999876542 14689
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh-cCCcEEEeChHHHHHHHhccCccCCCccEEEech
Q 022383 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDE 183 (298)
Q Consensus 105 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE 183 (298)
|||+||++|+.|+.+.++.+.+..++++..++||.+...+...+. ..++|+|+||++|..++......++++++|||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 999999999999999999999888999999999987776666654 5689999999999999888888899999999999
Q ss_pred hhHhhccccHHHHHHHHHhCCC--CccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHH
Q 022383 184 SDEMLSRGFKDQIYDVYRYLPP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFD 261 (298)
Q Consensus 184 ~h~~~~~~~~~~i~~i~~~~~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~ 261 (298)
+|.+.+.+|...+..+++..+. +.|++++|||++..+..+...++.+|..+.+.........+.+.+..+...+ +..
T Consensus 246 ah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-k~~ 324 (475)
T PRK01297 246 ADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSD-KYK 324 (475)
T ss_pred HHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchh-HHH
Confidence 9999999999999999998864 5799999999999999999999889988877666665566777777766665 888
Q ss_pred HHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 262 TLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 262 ~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
.+..++......++||||++++.|+.+++.|...|+
T Consensus 325 ~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~ 360 (475)
T PRK01297 325 LLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGI 360 (475)
T ss_pred HHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence 888888887778999999999999999999987764
No 19
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-42 Score=297.71 Aligned_cols=262 Identities=31% Similarity=0.507 Sum_probs=236.0
Q ss_pred cCcccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhcc--CC---CCeEEE
Q 022383 33 TSFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT--SS---REVQAL 105 (298)
Q Consensus 33 ~~~~~l~--l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~--~~---~~~~~l 105 (298)
..|++++ |+++++.++..+||...||+|..++|.+++++|+++.++||||||+||++|+++.+.. .. ....++
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3678775 6699999999999999999999999999999999999999999999999999999832 11 123699
Q ss_pred EEcCcHHHHHHHHHHHHHhhcc-CCceEEEEEcCCchHHHHHHhh-cCCcEEEeChHHHHHHHhcc--CccCCCccEEEe
Q 022383 106 ILSPTRELATQTEKVILAIGDF-INIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLVL 181 (298)
Q Consensus 106 il~p~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~~~~~--~~~~~~l~~vVi 181 (298)
||+|||||+.||.+++..+... ..+.+.++.||....+.+..+. +++.|+||||++|..++... .+++++++++|+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999988766 5788999999988887777664 67889999999999999884 466779999999
Q ss_pred chhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCcc--CcCCceEEEEEecCccch
Q 022383 182 DESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDEL--TLEGIKQFFVAVEREEWK 259 (298)
Q Consensus 182 DE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~k 259 (298)
||||.+++.||...++.|++.+|+.++.=+||||...++.++.+..+.+|..+.+..... ++++...+|..|+..+ |
T Consensus 164 DEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~e-K 242 (567)
T KOG0345|consen 164 DEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADE-K 242 (567)
T ss_pred cchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHH-H
Confidence 999999999999999999999999999999999999999999999999999999876655 7788999999999988 9
Q ss_pred HHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 260 FDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 260 ~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
...+..++.....+|+|||..|...+++.+..|...
T Consensus 243 ~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~ 278 (567)
T KOG0345|consen 243 LSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL 278 (567)
T ss_pred HHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH
Confidence 999999999999999999999999999999888653
No 20
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.4e-42 Score=300.32 Aligned_cols=290 Identities=25% Similarity=0.357 Sum_probs=263.4
Q ss_pred HHhcCCCCCCCCCcceeecccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHH
Q 022383 7 MRRRGGGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~ 86 (298)
|..|+-+.-..+-.....+..-+.|+.+|++.+++.++++.+.+.||..|+|+|..++|..++.+|+|.++.||||||.+
T Consensus 219 m~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaa 298 (673)
T KOG0333|consen 219 MTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAA 298 (673)
T ss_pred cCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCcccc
Confidence 34444444444444455667778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccC---------CCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEe
Q 022383 87 IALTVCQTVDTS---------SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSG 157 (298)
Q Consensus 87 ~~~~~~~~~~~~---------~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~ 157 (298)
|++|++..+... ..+|+++++.||++|++|+.+.-.++++..+++++.+.||.+..++-.++..+|+|+|+
T Consensus 299 f~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceivia 378 (673)
T KOG0333|consen 299 FLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIA 378 (673)
T ss_pred chhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeec
Confidence 999999876432 34789999999999999999999999999999999999999999988889999999999
Q ss_pred ChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCC-------------------------CccEEEE
Q 022383 158 TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-------------------------DLQVVLI 212 (298)
Q Consensus 158 Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~-------------------------~~~~v~~ 212 (298)
||++|...+.+..+-++.+.+||+||||.|.+.+|.+++..++..+|. -.|.++|
T Consensus 379 tPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mf 458 (673)
T KOG0333|consen 379 TPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMF 458 (673)
T ss_pred CchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEE
Confidence 999999999999999999999999999999999999999999999873 1689999
Q ss_pred EeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHH
Q 022383 213 SATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYF 292 (298)
Q Consensus 213 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L 292 (298)
|||+++.++.+++.|+.+|..+.+.......+.+.|.++.+..++ |...|..+++.....++|||+|+++.|+.+|+.|
T Consensus 459 tatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~-k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~L 537 (673)
T KOG0333|consen 459 TATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDE-KRKKLIEILESNFDPPIIIFVNTKKGADALAKIL 537 (673)
T ss_pred ecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchH-HHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHH
Confidence 999999999999999999999999988888889999999999888 8999999999887789999999999999999999
Q ss_pred hhhcC
Q 022383 293 WIRWI 297 (298)
Q Consensus 293 ~~~~~ 297 (298)
.+.|+
T Consensus 538 eK~g~ 542 (673)
T KOG0333|consen 538 EKAGY 542 (673)
T ss_pred hhccc
Confidence 88775
No 21
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.2e-41 Score=292.74 Aligned_cols=264 Identities=27% Similarity=0.439 Sum_probs=238.3
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC----CCCeEEEE
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQALI 106 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~----~~~~~~li 106 (298)
....|++..|++...++++++||+..+++|+..++.++.|+|+++.|.||+|||+||++|+++.+... +.+..++|
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlI 159 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLI 159 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEE
Confidence 35578889999999999999999999999999999999999999999999999999999999987543 24568999
Q ss_pred EcCcHHHHHHHHHHHHHhhccC-CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc-cCccCCCccEEEechh
Q 022383 107 LSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDES 184 (298)
Q Consensus 107 l~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~-~~~~~~~l~~vViDE~ 184 (298)
+||||+|+.|++...+++.+.+ ++.+....||.....+...+..+++|+|+||++|...+.+ ..+.+++++++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999999988 8999999999999988888888999999999999999988 5677788899999999
Q ss_pred hHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCC-CCEEEEecCC--ccCcCCceEEEEEecCccchHH
Q 022383 185 DEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMT-DPVKILVKRD--ELTLEGIKQFFVAVEREEWKFD 261 (298)
Q Consensus 185 h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~k~~ 261 (298)
|++++.||...++.|++.+|...|.++||||.++.+.++++-.+. +|..+.+... ..+..++.|.|+.++... ++-
T Consensus 240 DrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~-~f~ 318 (543)
T KOG0342|consen 240 DRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDS-RFS 318 (543)
T ss_pred hhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccc-hHH
Confidence 999999999999999999999999999999999999999887665 4777766543 455688999999888887 688
Q ss_pred HHHHHHhhCCC-CcEEEEecchhhHHHHHHHHhhh
Q 022383 262 TLCDLYDTLTI-TQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 262 ~l~~ll~~~~~-~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
.+..+++.+.. .|+||||+|...+..+++.|+..
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~ 353 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI 353 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc
Confidence 89999987766 79999999999999999999743
No 22
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-42 Score=294.25 Aligned_cols=274 Identities=29% Similarity=0.412 Sum_probs=256.4
Q ss_pred ecccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC-----
Q 022383 24 ETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----- 98 (298)
Q Consensus 24 ~~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~----- 98 (298)
-+..+++++.+|+.+++++.+..+.++..|.+|+|.|.+++|..++|++++-.|.||||||.||++|++.++...
T Consensus 214 ~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~ 293 (731)
T KOG0339|consen 214 SGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKP 293 (731)
T ss_pred ccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcC
Confidence 466788999999999999999999999999999999999999999999999999999999999999999988542
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccE
Q 022383 99 SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKL 178 (298)
Q Consensus 99 ~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~ 178 (298)
..+|..+|+|||++|+.|++..++++++..+++++.++||.+..++.+.+..++.|+||||++|..++.-+..++.++.+
T Consensus 294 g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~ 373 (731)
T KOG0339|consen 294 GEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSY 373 (731)
T ss_pred CCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccc
Q 022383 179 LVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEW 258 (298)
Q Consensus 179 vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 258 (298)
+|+||+|.|.+.||...++.|...+++..|.++||||++..++.+.+..+.+|+.+...........|.|.+..|+.++.
T Consensus 374 LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~ 453 (731)
T KOG0339|consen 374 LVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEK 453 (731)
T ss_pred EEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHH
Confidence 99999999999999999999999999999999999999999999999999999999888778888999999999999988
Q ss_pred hHHHHHHHHh-hCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 259 KFDTLCDLYD-TLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 259 k~~~l~~ll~-~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
|+.-+..-|- ....+++|||+..+.++++++..|.-+++
T Consensus 454 Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~ 493 (731)
T KOG0339|consen 454 KLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGF 493 (731)
T ss_pred HHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccc
Confidence 8887655544 44557999999999999999999988776
No 23
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-42 Score=297.41 Aligned_cols=286 Identities=29% Similarity=0.395 Sum_probs=254.6
Q ss_pred CCCCCCCCCcceeecccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHH
Q 022383 11 GGGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALT 90 (298)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~ 90 (298)
..+.+..+-.+...+...|.++.+|++-.+.+.+...++..++..|+|+|+.++|.+..|+++++||+||+|||.||++|
T Consensus 52 ~nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiP 131 (482)
T KOG0335|consen 52 INFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIP 131 (482)
T ss_pred hccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHH
Confidence 34555555566667777788889999989999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCC----------CCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChH
Q 022383 91 VCQTVDTSS----------REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPG 160 (298)
Q Consensus 91 ~~~~~~~~~----------~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~ 160 (298)
++..+.... ..|+++|++||++|+.|++++.+++.-..+++....+|+.+...+...+.++|+|+|+||+
T Consensus 132 ii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpG 211 (482)
T KOG0335|consen 132 IISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPG 211 (482)
T ss_pred HHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCc
Confidence 999875432 3589999999999999999999999988899999999999998999999999999999999
Q ss_pred HHHHHHhccCccCCCccEEEechhhHhhc-cccHHHHHHHHHhCC----CCccEEEEEeeCchhHHHHHHhcCCC-CEEE
Q 022383 161 RVCDMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLP----PDLQVVLISATLPHEILEMTTKFMTD-PVKI 234 (298)
Q Consensus 161 ~l~~~~~~~~~~~~~l~~vViDE~h~~~~-~~~~~~i~~i~~~~~----~~~~~v~~SAT~~~~~~~~~~~~~~~-~~~~ 234 (298)
+|..++..+.+.+.++.++|+||||.|++ .+|.+.|+.++.... .+.|.++||||+|..+..+...++.+ ...+
T Consensus 212 rL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~l 291 (482)
T KOG0335|consen 212 RLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFL 291 (482)
T ss_pred hhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEE
Confidence 99999999999999999999999999999 799999999998875 37899999999999999987777765 6677
Q ss_pred EecCCccCcCCceEEEEEecCccchHHHHHHHHhhCC----CC-----cEEEEecchhhHHHHHHHHhhhcC
Q 022383 235 LVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLT----IT-----QAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~----~~-----k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
.+........++.|.+..+.... |...+.+++.... .+ +++|||.+++.|..++.+|...++
T Consensus 292 aV~rvg~~~~ni~q~i~~V~~~~-kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~ 362 (482)
T KOG0335|consen 292 AVGRVGSTSENITQKILFVNEME-KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGY 362 (482)
T ss_pred EEeeeccccccceeEeeeecchh-hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCC
Confidence 77778888899999999999888 7788888776322 23 899999999999999999988765
No 24
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-41 Score=279.75 Aligned_cols=267 Identities=29% Similarity=0.421 Sum_probs=238.2
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC
Q 022383 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (298)
Q Consensus 30 ~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (298)
.....|+.|||++|+.+-|+.+|+..|+|+|..++|.|+.|+|++-+|.||||||.+|.+|+++++...+.+..++|++|
T Consensus 4 ~t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTP 83 (442)
T KOG0340|consen 4 KTAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTP 83 (442)
T ss_pred cccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhcc----CccCCCccEEEechhh
Q 022383 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLVLDESD 185 (298)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~----~~~~~~l~~vViDE~h 185 (298)
|++|+-|+.++|..+++..++++.+++||.+.-.+...+..+++++|+||+++...+..+ ...++++.++|+||||
T Consensus 84 TrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEAD 163 (442)
T KOG0340|consen 84 TRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEAD 163 (442)
T ss_pred hHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchh
Confidence 999999999999999999999999999999998888999999999999999999998875 3457999999999999
Q ss_pred HhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCC--CEEEEecCCccCcCCceEEEEEecCccchHHHH
Q 022383 186 EMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTD--PVKILVKRDELTLEGIKQFFVAVEREEWKFDTL 263 (298)
Q Consensus 186 ~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l 263 (298)
.+++..|.+.+.-+.+.+|..+|.+++|||+++.+..+....... .......+.........+.|+.++... |...+
T Consensus 164 rvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~v-kdaYL 242 (442)
T KOG0340|consen 164 RVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDV-KDAYL 242 (442)
T ss_pred hhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhh-hHHHH
Confidence 999999999999999999999999999999998877765544443 333444455666777889999998877 77778
Q ss_pred HHHHhhCC---CCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 264 CDLYDTLT---ITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 264 ~~ll~~~~---~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
+.++.... .+.++||+|+..+|+.++..|+...+
T Consensus 243 v~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~ 279 (442)
T KOG0340|consen 243 VHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEV 279 (442)
T ss_pred HHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhce
Confidence 88876543 35899999999999999999987654
No 25
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-40 Score=278.91 Aligned_cols=272 Identities=29% Similarity=0.443 Sum_probs=239.9
Q ss_pred ecccCCccccCccc-CCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhcc-----
Q 022383 24 ETTEGVEAITSFDA-MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT----- 97 (298)
Q Consensus 24 ~~~~~~~~~~~~~~-l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~----- 97 (298)
+...-|.|.-+|++ +.-.+++...+++.||..|+|+|+++||.+++|+|++.+|.||+|||++|++|.+.++..
T Consensus 210 ekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~ 289 (629)
T KOG0336|consen 210 EKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRR 289 (629)
T ss_pred CcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhh
Confidence 33445677778887 578999999999999999999999999999999999999999999999999998887643
Q ss_pred -CCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 98 -SSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 98 -~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
...++.+|++.||++|+.|+.-.+.++. ..++....++|+.+..++...+..+.+|+++||++|..+...+.+++..+
T Consensus 290 ~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~si 368 (629)
T KOG0336|consen 290 EQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASI 368 (629)
T ss_pred hccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeee
Confidence 2457899999999999999999888765 34778888899999999999999999999999999999999999999999
Q ss_pred cEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCc-CCceEEEEEecC
Q 022383 177 KLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTL-EGIKQFFVAVER 255 (298)
Q Consensus 177 ~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~ 255 (298)
.++|+||||.|++.+|...+++++--+++..|+++.|||||+.+..+...|+.+|..+.+...+... ..+.|.+ .+..
T Consensus 369 TYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i-~v~~ 447 (629)
T KOG0336|consen 369 TYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNI-IVTT 447 (629)
T ss_pred EEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeE-Eecc
Confidence 9999999999999999999999999999999999999999999999999999999999988766444 5567776 5666
Q ss_pred ccchHHHHHHHHhhCCC-CcEEEEecchhhHHHHHHHHhhhcC
Q 022383 256 EEWKFDTLCDLYDTLTI-TQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 256 ~~~k~~~l~~ll~~~~~-~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
+..|.+.+..+++.... .|+||||.++..|..+...|.-+|+
T Consensus 448 d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi 490 (629)
T KOG0336|consen 448 DSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGI 490 (629)
T ss_pred cHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhccc
Confidence 66699999988887654 5999999999999988777655554
No 26
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-40 Score=277.65 Aligned_cols=288 Identities=34% Similarity=0.534 Sum_probs=255.5
Q ss_pred hhhHHHhcCCCCCCCCCcceeecccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcC--CcEEEEcCCC
Q 022383 3 AATAMRRRGGGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSG 80 (298)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~pTG 80 (298)
+.+++.+.-...+.... +.+++.....+|++|+|.|++++++..|+|..|+.+|..++|.++.. +|.|.++..|
T Consensus 64 ~~~~ll~~~~~~~vk~~----dpnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsG 139 (477)
T KOG0332|consen 64 ADSSLLNKFIESNVKLA----DPNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSG 139 (477)
T ss_pred chhhhhcchhhhceeec----CCCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCC
Confidence 44455555444444444 37778888899999999999999999999999999999999999865 7999999999
Q ss_pred CchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChH
Q 022383 81 TGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPG 160 (298)
Q Consensus 81 ~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~ 160 (298)
+|||.||.+.++.++......|+++.|+|+++||.|+.+.+.+++++.++...+...+........ + ..+|+|+||+
T Consensus 140 tGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~-i--~eqIviGTPG 216 (477)
T KOG0332|consen 140 TGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNK-L--TEQIVIGTPG 216 (477)
T ss_pred CchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCCc-c--hhheeeCCCc
Confidence 999999999999999988888999999999999999999999999999888877766552221111 1 1379999999
Q ss_pred HHHHHHhc-cCccCCCccEEEechhhHhhcc-ccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecC
Q 022383 161 RVCDMIKR-KTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKR 238 (298)
Q Consensus 161 ~l~~~~~~-~~~~~~~l~~vViDE~h~~~~~-~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 238 (298)
.+..+... ..+++.+++.+|+||||.|.+. ||+++-..+.+.+|++.|++++|||+.+.+..+.....+++..+...+
T Consensus 217 tv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~ 296 (477)
T KOG0332|consen 217 TVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKR 296 (477)
T ss_pred cHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeeh
Confidence 99998877 7889999999999999999765 799999999999999999999999999999999999999999999999
Q ss_pred CccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 239 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
++..+.+|.++|..|..+++|++.+..+......++.||||.|++.|.+++..++..|.
T Consensus 297 eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh 355 (477)
T KOG0332|consen 297 EELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGH 355 (477)
T ss_pred hhccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCc
Confidence 99999999999999999999999999999988889999999999999999999998874
No 27
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-39 Score=281.46 Aligned_cols=270 Identities=25% Similarity=0.424 Sum_probs=226.8
Q ss_pred ecccCCccccCcccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhcc-----
Q 022383 24 ETTEGVEAITSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT----- 97 (298)
Q Consensus 24 ~~~~~~~~~~~~~~l~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~----- 97 (298)
+.++.+-....|.+|||++.+...|.+ |++..||.+|+++||.++.|+|++|.++||||||++|++|+++.+..
T Consensus 127 ~v~e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki 206 (708)
T KOG0348|consen 127 QVSEAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKI 206 (708)
T ss_pred cccccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccc
Confidence 344444455689999999999999987 79999999999999999999999999999999999999999998743
Q ss_pred -CCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceE-EEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc-cCccCC
Q 022383 98 -SSREVQALILSPTRELATQTEKVILAIGDFINIQA-HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTR 174 (298)
Q Consensus 98 -~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~-~~~~~~ 174 (298)
...|+.++||+||||||.|+++.++++.+....-+ +.+.||...+.+...+..+++|+|+||++|++.+.+ ..+.++
T Consensus 207 ~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s 286 (708)
T KOG0348|consen 207 QRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFS 286 (708)
T ss_pred cccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheee
Confidence 34588999999999999999999999987755433 667888888888889999999999999999999987 678899
Q ss_pred CccEEEechhhHhhccccHHHHHHHHHhCC-------------CCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCC--
Q 022383 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLP-------------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-- 239 (298)
Q Consensus 175 ~l~~vViDE~h~~~~~~~~~~i~~i~~~~~-------------~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-- 239 (298)
++.++|+||+|.+++-||...+..|++.+. +..|-+++|||++..+.++....+.+|..+..+..
T Consensus 287 ~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~ 366 (708)
T KOG0348|consen 287 RLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHS 366 (708)
T ss_pred eeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhh
Confidence 999999999999999999999999988872 13678999999999999999999999988872110
Q ss_pred -----------------------ccCcCCceEEEEEecCccchHHHHHHHHhh----CCCCcEEEEecchhhHHHHHHHH
Q 022383 240 -----------------------ELTLEGIKQFFVAVEREEWKFDTLCDLYDT----LTITQAVIFCNTKRKIYYSVFYF 292 (298)
Q Consensus 240 -----------------------~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~----~~~~k~lIf~~s~~~~~~l~~~L 292 (298)
...+....+.|..++..- ++..+..++.. ....|+|||..+.+.++.=+..|
T Consensus 367 ~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKL-RLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf 445 (708)
T KOG0348|consen 367 QLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKL-RLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLF 445 (708)
T ss_pred hcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCch-hHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHH
Confidence 122344567777777776 77777777653 34459999999999999888887
Q ss_pred hh
Q 022383 293 WI 294 (298)
Q Consensus 293 ~~ 294 (298)
..
T Consensus 446 ~~ 447 (708)
T KOG0348|consen 446 SE 447 (708)
T ss_pred Hh
Confidence 64
No 28
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-39 Score=302.23 Aligned_cols=277 Identities=30% Similarity=0.473 Sum_probs=253.9
Q ss_pred ceeecccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC--
Q 022383 21 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-- 98 (298)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~-- 98 (298)
..+.+..-++|+.+|...|++..|+..++++||..|+++|.++||++.+|+|+|.+|.||||||++|++|++.++...
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~ 432 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRP 432 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCC
Confidence 566788889999999999999999999999999999999999999999999999999999999999999999876432
Q ss_pred ---CCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccC---cc
Q 022383 99 ---SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT---LR 172 (298)
Q Consensus 99 ---~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~---~~ 172 (298)
..||.+||++||++|+.|+.+.++++.+..+++++..+|+.....++..+.+++.|+||||+++..++-.+. .+
T Consensus 433 ~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtn 512 (997)
T KOG0334|consen 433 LEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTN 512 (997)
T ss_pred hhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCcccc
Confidence 358999999999999999999999999999999999999999999999999999999999999999875544 45
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEE
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVA 252 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 252 (298)
+.++.++|+||+|.|.+.+|.+.+..|++.+++..|.+++|||++..++.+....+..|+.+.+........++.+.+..
T Consensus 513 lrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V 592 (997)
T KOG0334|consen 513 LRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRV 592 (997)
T ss_pred ccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEE
Confidence 56666999999999999999999999999999999999999999999999999999999999988777778899999999
Q ss_pred ecCccchHHHHHHHHhhC-CCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 253 VEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 253 ~~~~~~k~~~l~~ll~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
+..+..|...+.+++... ...++||||.+...|..+.+.|++.|+
T Consensus 593 ~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~ 638 (997)
T KOG0334|consen 593 CAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGY 638 (997)
T ss_pred ecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCc
Confidence 996666999999999743 457999999999999999999998774
No 29
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-39 Score=273.66 Aligned_cols=266 Identities=30% Similarity=0.469 Sum_probs=244.7
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC-CCCeEEEEEcCc
Q 022383 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPT 110 (298)
Q Consensus 32 ~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~-~~~~~~lil~p~ 110 (298)
.-.|+++||+..+.+++.+-||..|+|.|+..+|.++++++++-.+-||+|||.||++|+++++... ..+.++++++|+
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 5689999999999999999999999999999999999999999999999999999999999998654 346799999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc
Q 022383 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (298)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~ 190 (298)
++|+.|+.+..+.+++..+++..+++|+....++...+..++|||++||+++..+.-+..+.++.+.||||||+|.+++.
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 99999999999999999999999999999999999999999999999999999988887789999999999999999999
Q ss_pred ccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhC
Q 022383 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (298)
Q Consensus 191 ~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~ 270 (298)
||+..+..++..++.+.|.++||||+|+.+.++.+..+.+|..+..+.+..........+..+...+ |...|..++...
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~-K~aaLl~il~~~ 258 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE-KEAALLSILGGR 258 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH-HHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999997766666666777777777777 888888888754
Q ss_pred C-CCcEEEEecchhhHHHHHHHHhhhcCC
Q 022383 271 T-ITQAVIFCNTKRKIYYSVFYFWIRWIG 298 (298)
Q Consensus 271 ~-~~k~lIf~~s~~~~~~l~~~L~~~~~~ 298 (298)
- .++++|||.|+..++.+...|+..|++
T Consensus 259 ~~~~~t~vf~~tk~hve~~~~ll~~~g~~ 287 (529)
T KOG0337|consen 259 IKDKQTIVFVATKHHVEYVRGLLRDFGGE 287 (529)
T ss_pred ccccceeEEecccchHHHHHHHHHhcCCC
Confidence 3 468999999999999999999988864
No 30
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.2e-40 Score=279.02 Aligned_cols=274 Identities=30% Similarity=0.477 Sum_probs=244.4
Q ss_pred eeecccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhc-----
Q 022383 22 VFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVD----- 96 (298)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~----- 96 (298)
.+++...+.|+.+|.++.++..+++.|++.|+.+|+|.|.+-+|.+++|+|.+-.|-||||||++|.+|++....
T Consensus 159 ~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~ 238 (610)
T KOG0341|consen 159 LVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMM 238 (610)
T ss_pred EeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhc
Confidence 457788899999999999999999999999999999999999999999999999999999999999999877531
Q ss_pred ---cCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC------CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHh
Q 022383 97 ---TSSREVQALILSPTRELATQTEKVILAIGDFI------NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK 167 (298)
Q Consensus 97 ---~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~ 167 (298)
....+|..+|+||+++|+.|+++.+..+...+ .++..++.||.+..++...+..+.+|+|+||++|..++.
T Consensus 239 lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~ 318 (610)
T KOG0341|consen 239 LPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLA 318 (610)
T ss_pred CccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHH
Confidence 23568899999999999999999988775433 468889999999999999999999999999999999999
Q ss_pred ccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCce
Q 022383 168 RKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIK 247 (298)
Q Consensus 168 ~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 247 (298)
...+++.-+.++++||+|+|.+.||.++++.++..+...+|.++||||+|..++.+.+..+-.|+.+.+.+.....-++.
T Consensus 319 KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldVi 398 (610)
T KOG0341|consen 319 KKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVI 398 (610)
T ss_pred HhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888777777
Q ss_pred EEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 248 QFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 248 ~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
|.+..+..+. |...+.+.++. ...++||||..+.++..++++|--+|.
T Consensus 399 QevEyVkqEa-KiVylLeCLQK-T~PpVLIFaEkK~DVD~IhEYLLlKGV 446 (610)
T KOG0341|consen 399 QEVEYVKQEA-KIVYLLECLQK-TSPPVLIFAEKKADVDDIHEYLLLKGV 446 (610)
T ss_pred HHHHHHHhhh-hhhhHHHHhcc-CCCceEEEeccccChHHHHHHHHHccc
Confidence 7666666555 55555555543 346999999999999999999987774
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.1e-39 Score=267.93 Aligned_cols=265 Identities=60% Similarity=0.979 Sum_probs=247.0
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC
Q 022383 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (298)
Q Consensus 30 ~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (298)
+...+|++++|++.+++.++..||+.|+..|+.++.++.+|.|+.+.+++|+|||.+|.+++++.+........+++++|
T Consensus 23 evvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaP 102 (397)
T KOG0327|consen 23 EVVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAP 102 (397)
T ss_pred HHhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcc
Confidence 45569999999999999999999999999999999999999999999999999999999999999877777789999999
Q ss_pred cHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh-hcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhh
Q 022383 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~ 188 (298)
+++|+.|+.++.+.++...++++..+.|+.....+...+ ...++|+|+||+++..+++.+.+..+.++++|+||+|.++
T Consensus 103 treLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmL 182 (397)
T KOG0327|consen 103 TRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEML 182 (397)
T ss_pred hHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhh
Confidence 999999999999999999999999999998877555444 4568999999999999999988888899999999999999
Q ss_pred ccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHh
Q 022383 189 SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (298)
Q Consensus 189 ~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~ 268 (298)
+.+|.+.+..+++.+|++.|++++|||+|.++......++.+|..+.+...+.+..++.++++....++ |+..+..+.+
T Consensus 183 s~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~dl~~ 261 (397)
T KOG0327|consen 183 SRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLCDLYR 261 (397)
T ss_pred ccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999888 9999999998
Q ss_pred hCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 269 TLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 269 ~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
...+.+||||+++.+..+...|.+++.
T Consensus 262 --~~~q~~if~nt~r~v~~l~~~L~~~~~ 288 (397)
T KOG0327|consen 262 --RVTQAVIFCNTRRKVDNLTDKLRAHGF 288 (397)
T ss_pred --hhhcceEEecchhhHHHHHHHHhhCCc
Confidence 457999999999999999999977653
No 32
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-38 Score=276.72 Aligned_cols=268 Identities=25% Similarity=0.394 Sum_probs=229.4
Q ss_pred CCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcC-CcEEEEcCCCCchHHHHHHHHHHhhccC--------
Q 022383 28 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTS-------- 98 (298)
Q Consensus 28 ~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~li~~pTG~GKT~~~~~~~~~~~~~~-------- 98 (298)
....+..|..|+++..++.+|.++||..|+++|.-.+|++..| .|++--|.||||||+||-+|+++.+...
T Consensus 176 ~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~ 255 (731)
T KOG0347|consen 176 SKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELS 255 (731)
T ss_pred cccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhh
Confidence 3445678999999999999999999999999999999999988 7999999999999999999999955322
Q ss_pred ---CCCe--EEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccC---
Q 022383 99 ---SREV--QALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--- 170 (298)
Q Consensus 99 ---~~~~--~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~--- 170 (298)
..++ .+||++|||+||.|+..-+..+....++++..+.||.....+...+...++|+|+||++|..++.+..
T Consensus 256 ~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l 335 (731)
T KOG0347|consen 256 NTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHL 335 (731)
T ss_pred hHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhh
Confidence 1233 49999999999999999999999999999999999998888888888899999999999999998743
Q ss_pred ccCCCccEEEechhhHhhccccHHHHHHHHHhCC-----CCccEEEEEeeCchh---------------------HHHHH
Q 022383 171 LRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-----PDLQVVLISATLPHE---------------------ILEMT 224 (298)
Q Consensus 171 ~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~-----~~~~~v~~SAT~~~~---------------------~~~~~ 224 (298)
-++.++.++|+||+|+|.+.|+-..+..+++.+. ...|.++||||++-. ++.++
T Consensus 336 ~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lm 415 (731)
T KOG0347|consen 336 GNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLM 415 (731)
T ss_pred hhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHH
Confidence 4689999999999999999998888888888775 357999999997431 33333
Q ss_pred Hh--cCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 225 TK--FMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 225 ~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
.. +.+.|..+...+...+...+....+.|+..+ |.-.+++++..++ +++|||||+...+..++-+|...++
T Consensus 416 k~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~e-KD~ylyYfl~ryP-GrTlVF~NsId~vKRLt~~L~~L~i 488 (731)
T KOG0347|consen 416 KKIGFRGKPKIIDLTPQSATASTLTESLIECPPLE-KDLYLYYFLTRYP-GRTLVFCNSIDCVKRLTVLLNNLDI 488 (731)
T ss_pred HHhCccCCCeeEecCcchhHHHHHHHHhhcCCccc-cceeEEEEEeecC-CceEEEechHHHHHHHHHHHhhcCC
Confidence 33 3457777887777777777888888897777 8888888888876 8999999999999999999987665
No 33
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=5.8e-38 Score=277.44 Aligned_cols=268 Identities=28% Similarity=0.495 Sum_probs=248.1
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC
Q 022383 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (298)
Q Consensus 30 ~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (298)
.....|+++.|...++..|+..+|..|+++|..+||+++.+-|+||++..|+|||++|...+++.+......++.+|++|
T Consensus 22 ~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~P 101 (980)
T KOG4284|consen 22 NCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTP 101 (980)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEec
Confidence 34568999999999999999999999999999999999999999999999999999999999998888888889999999
Q ss_pred cHHHHHHHHHHHHHhhcc-CCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhh
Q 022383 110 TRELATQTEKVILAIGDF-INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~ 188 (298)
||+++-|+.+.+.+++.. .|.++..+.||+.-......+. .++|+||||+++..++..+.++.++++++|+||||.+.
T Consensus 102 TREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~ 180 (980)
T KOG4284|consen 102 TREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-QTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLM 180 (980)
T ss_pred chhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-hceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhh
Confidence 999999999999999864 4899999999998877666664 46899999999999999999999999999999999999
Q ss_pred c-cccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCcc-------chH
Q 022383 189 S-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE-------WKF 260 (298)
Q Consensus 189 ~-~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------~k~ 260 (298)
+ ..|+..+..|+..+|..+|++.+|||.+..+...+..++.+|..+.....+..+-++.|+++..+... -|+
T Consensus 181 ~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlkl 260 (980)
T KOG4284|consen 181 DTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKL 260 (980)
T ss_pred chhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHH
Confidence 8 47999999999999999999999999999999999999999999999999999999999999887652 367
Q ss_pred HHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcCC
Q 022383 261 DTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWIG 298 (298)
Q Consensus 261 ~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~~ 298 (298)
..|..+++..+..+.||||+....|+.++..|...|+|
T Consensus 261 q~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d 298 (980)
T KOG4284|consen 261 QKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLD 298 (980)
T ss_pred HHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCC
Confidence 78888899999999999999999999999999999986
No 34
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=100.00 E-value=1.3e-35 Score=242.68 Aligned_cols=200 Identities=47% Similarity=0.812 Sum_probs=184.6
Q ss_pred cccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC--CCCeEEEEEcCcHH
Q 022383 35 FDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS--SREVQALILSPTRE 112 (298)
Q Consensus 35 ~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~--~~~~~~lil~p~~~ 112 (298)
|+++++++.+.+.|.++|+..|+++|.++++.+.+|+|+++++|||+|||++|+++++..+... ..+++++|++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 7899999999999999999999999999999999999999999999999999999999998776 46779999999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcccc
Q 022383 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (298)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~ 192 (298)
|+.|+...++++....++.+..++|+.........+.++++|+|+||+++..++......+++++++|+||+|.+.+.++
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~~~ 160 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGF 160 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhccCh
Confidence 99999999999988778889999998887776666767899999999999999988888889999999999999988889
Q ss_pred HHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEE
Q 022383 193 KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKI 234 (298)
Q Consensus 193 ~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~ 234 (298)
...+..+.+.++..+|++++|||+++....++..++.+|..+
T Consensus 161 ~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 161 EDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred HHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 999999999999899999999999999999998888887765
No 35
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-37 Score=244.06 Aligned_cols=264 Identities=34% Similarity=0.590 Sum_probs=236.4
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHH
Q 022383 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (298)
Q Consensus 33 ~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (298)
.-|.++-|.|++++++.++||++|+..|.+++|...-|-|++.+|.+|.|||.+|.+.-++++........++++|+|++
T Consensus 42 sgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtre 121 (387)
T KOG0329|consen 42 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 121 (387)
T ss_pred cchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHH
Confidence 46778889999999999999999999999999999999999999999999999999999999988877889999999999
Q ss_pred HHHHHHHHHHHhhccC-CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc-
Q 022383 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR- 190 (298)
Q Consensus 113 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~- 190 (298)
|+-|+.+...++.++. ++++..++||...+.....+.+.++|+|+||++++.+.+++.+++++++.+|+||||.|+++
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~l 201 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQL 201 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHH
Confidence 9999999888887765 78999999999888777778888999999999999999999999999999999999999876
Q ss_pred ccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCC-ccCcCCceEEEEEecCccchHHHHHHHHhh
Q 022383 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDT 269 (298)
Q Consensus 191 ~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~ 269 (298)
..+.+++.+.+.-|...|++++|||++.++...++.++.+|..+.++.+ ..++.+.+|+|+..+..+ |-..+.+++..
T Consensus 202 DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~e-KNrkl~dLLd~ 280 (387)
T KOG0329|consen 202 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENE-KNRKLNDLLDV 280 (387)
T ss_pred HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhh-hhhhhhhhhhh
Confidence 6889999999999999999999999999999999999999999888754 456688999999998887 88888888888
Q ss_pred CCCCcEEEEecchhhHH----HHHHHHhhhcC
Q 022383 270 LTITQAVIFCNTKRKIY----YSVFYFWIRWI 297 (298)
Q Consensus 270 ~~~~k~lIf~~s~~~~~----~l~~~L~~~~~ 297 (298)
...++++||+.++.... -++..|--+|+
T Consensus 281 LeFNQVvIFvKsv~Rl~f~kr~vat~lfgrgm 312 (387)
T KOG0329|consen 281 LEFNQVVIFVKSVQRLSFQKRLVATDLFGRGM 312 (387)
T ss_pred hhhcceeEeeehhhhhhhhhhhHHhhhhcccc
Confidence 88899999999987643 24444444443
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.1e-35 Score=279.25 Aligned_cols=247 Identities=19% Similarity=0.224 Sum_probs=187.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHH
Q 022383 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (298)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (298)
+++.+.++|++.||+.|+++|.++++.+++|+|+++++|||||||+||++|+++.+..+ .+.++|||+||++|++|+.+
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~-~~~~aL~l~PtraLa~q~~~ 99 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD-PRATALYLAPTKALAADQLR 99 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC-CCcEEEEEcChHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999998653 35699999999999999999
Q ss_pred HHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc-c---CccCCCccEEEechhhHhhccccHHH
Q 022383 120 VILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-K---TLRTRAIKLLVLDESDEMLSRGFKDQ 195 (298)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~-~---~~~~~~l~~vViDE~h~~~~~~~~~~ 195 (298)
.++++. ..++++..+.|+.+.. +...+..+++|+|+||+++...+.. . ...++++++||+||+|.+.+ .|...
T Consensus 100 ~l~~l~-~~~i~v~~~~Gdt~~~-~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~ 176 (742)
T TIGR03817 100 AVRELT-LRGVRPATYDGDTPTE-ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSH 176 (742)
T ss_pred HHHHhc-cCCeEEEEEeCCCCHH-HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHH
Confidence 999987 4478888888887754 3355666789999999999753322 1 12378999999999999854 46655
Q ss_pred HHHHHHh-------CCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecC-------------
Q 022383 196 IYDVYRY-------LPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER------------- 255 (298)
Q Consensus 196 i~~i~~~-------~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------- 255 (298)
+..+++. .+.++|++++|||+++..+ ....+++.|..+. .... .+....+.....+.
T Consensus 177 ~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i-~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~r 253 (742)
T TIGR03817 177 VALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAV-TEDG-SPRGARTVALWEPPLTELTGENGAPVR 253 (742)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEE-CCCC-CCcCceEEEEecCCccccccccccccc
Confidence 5444433 3567899999999988744 5667777776543 2222 22222222222111
Q ss_pred ---ccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 256 ---EEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 256 ---~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
...+...+..+++. +.++||||||++.|+.++..|++.
T Consensus 254 ~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~ 294 (742)
T TIGR03817 254 RSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRL 294 (742)
T ss_pred cchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 01234455555553 479999999999999999998753
No 37
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=8.8e-35 Score=278.34 Aligned_cols=252 Identities=18% Similarity=0.235 Sum_probs=186.4
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHH
Q 022383 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (298)
Q Consensus 34 ~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (298)
.|++++|++.+.+++++.||..|+|+|.++++. +.+|+|+++++|||+|||++|.++++..+.. +.++||++|+++
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~---~~kal~i~P~ra 78 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR---GGKALYIVPLRA 78 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc---CCcEEEEeChHH
Confidence 588999999999999999999999999999998 7799999999999999999999999998853 558999999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcccc
Q 022383 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (298)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~ 192 (298)
|+.|+.+.++++.. .++++..++|+...... ....++|+|+||+++..++++....++++++||+||+|.+.+.++
T Consensus 79 La~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~r 154 (737)
T PRK02362 79 LASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANR 154 (737)
T ss_pred HHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcc
Confidence 99999999998654 47889999988654332 224579999999999999988767789999999999999988888
Q ss_pred HHHHHHHHHhC---CCCccEEEEEeeCch--hHHHHHHhcCC----CCEEEE--ecCC-ccCcCCceEEEEEecCccchH
Q 022383 193 KDQIYDVYRYL---PPDLQVVLISATLPH--EILEMTTKFMT----DPVKIL--VKRD-ELTLEGIKQFFVAVEREEWKF 260 (298)
Q Consensus 193 ~~~i~~i~~~~---~~~~~~v~~SAT~~~--~~~~~~~~~~~----~~~~~~--~~~~-~~~~~~i~~~~~~~~~~~~k~ 260 (298)
+..++.++.++ ++..|++++|||+++ ++..|+..... .|..+. +... ...... .+............
T Consensus 155 g~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~-~~~~~~~~~~~~~~ 233 (737)
T PRK02362 155 GPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD-SQREVEVPSKDDTL 233 (737)
T ss_pred hHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc-ccccCCCccchHHH
Confidence 88877765554 467999999999976 33333321110 111111 0000 000000 00111111111123
Q ss_pred HHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 261 DTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 261 ~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
..+...++ .++++||||+|++.|+.++..|...
T Consensus 234 ~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~ 266 (737)
T PRK02362 234 NLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASA 266 (737)
T ss_pred HHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHH
Confidence 33333333 4579999999999999999998654
No 38
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=6.3e-34 Score=271.85 Aligned_cols=247 Identities=15% Similarity=0.201 Sum_probs=189.9
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHH
Q 022383 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (298)
Q Consensus 34 ~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (298)
+|+++++++.+.+.|++.||..|+|+|.++++. +.+|+|+++++|||+|||++|.+|++..+... +.++|||+|+++
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~--~~~~l~l~P~~a 79 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE--GGKAVYLVPLKA 79 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc--CCeEEEEeChHH
Confidence 578999999999999999999999999999986 78999999999999999999999999987643 458999999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcccc
Q 022383 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (298)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~ 192 (298)
|+.|+.+.++.+. ..++++..++|+.+.... ....++|+|+||+++..+++.....++++++||+||+|.+.+.++
T Consensus 80 La~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r 155 (720)
T PRK00254 80 LAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR 155 (720)
T ss_pred HHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc
Confidence 9999999998764 358899999998765432 235689999999999999987777789999999999999988888
Q ss_pred HHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceE-----EEEEecCcc------chHH
Q 022383 193 KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQ-----FFVAVEREE------WKFD 261 (298)
Q Consensus 193 ~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~~~~~~------~k~~ 261 (298)
...++.++..+..+.|++++|||+++. .++.. ++...... ....+..... .+....... ....
T Consensus 156 g~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~----~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T PRK00254 156 GATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVV----SDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWES 229 (720)
T ss_pred hHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCcccc----CCCCCCcceeeEecCCeeeccCcchhcchHHHHH
Confidence 999999999998899999999999763 44443 33222110 0111111111 111111110 0112
Q ss_pred HHHHHHhhCCCCcEEEEecchhhHHHHHHHHhh
Q 022383 262 TLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWI 294 (298)
Q Consensus 262 ~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~ 294 (298)
.+...++ .++++||||+|++.|+.++..|..
T Consensus 230 ~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~ 260 (720)
T PRK00254 230 LVYDAVK--KGKGALVFVNTRRSAEKEALELAK 260 (720)
T ss_pred HHHHHHH--hCCCEEEEEcChHHHHHHHHHHHH
Confidence 3334443 357999999999999999887753
No 39
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-34 Score=245.78 Aligned_cols=261 Identities=20% Similarity=0.325 Sum_probs=212.7
Q ss_pred ccCcccCCCCHH----------HHHHHHHCCCCCChHHHHHHHHHhh---------cCCcEEEEcCCCCchHHHHHHHHH
Q 022383 32 ITSFDAMGIKDD----------LLRGIYQYGFEKPSAIQQRAVMPII---------KGRDVIAQAQSGTGKTSMIALTVC 92 (298)
Q Consensus 32 ~~~~~~l~l~~~----------i~~~l~~~~~~~~~~~Q~~~~~~~~---------~~~~~li~~pTG~GKT~~~~~~~~ 92 (298)
...|+.++++.. +.+++.++++....|+|..++|.++ .++|+.|.||||||||+||.+|+.
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 345666666554 4445899999999999999999885 258999999999999999999999
Q ss_pred HhhccCC-CCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcC-----CcEEEeChHHHHHHH
Q 022383 93 QTVDTSS-REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG-----VHVVSGTPGRVCDMI 166 (298)
Q Consensus 93 ~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ilV~Tp~~l~~~~ 166 (298)
+.+.... .-.+++||+|+++|+.|+++.|.++....|+.++.+.|..+...+..++.+. .||+|+||++|...+
T Consensus 206 Q~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl 285 (620)
T KOG0350|consen 206 QLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHL 285 (620)
T ss_pred HHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhc
Confidence 9997753 2369999999999999999999999999999999999999888887777532 389999999999999
Q ss_pred hc-cCccCCCccEEEechhhHhhccccHHHHHHHHHhC----------------------------------CCCccEEE
Q 022383 167 KR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL----------------------------------PPDLQVVL 211 (298)
Q Consensus 167 ~~-~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~----------------------------------~~~~~~v~ 211 (298)
++ ..+++++++++||||+|++++..|+..+-.+...+ .+..+.++
T Consensus 286 ~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~ 365 (620)
T KOG0350|consen 286 NNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLV 365 (620)
T ss_pred cCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhh
Confidence 96 78999999999999999999887765544433222 12345788
Q ss_pred EEeeCchhHHHHHHhcCCCCEEEEec----CCccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHH
Q 022383 212 ISATLPHEILEMTTKFMTDPVKILVK----RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYY 287 (298)
Q Consensus 212 ~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~ 287 (298)
+|||+......+...-+..|-...+. .....+..+.+..+.++... |.-.++.++...+..++|+|+++.+.+.+
T Consensus 366 ~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~-kpl~~~~lI~~~k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 366 FSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKF-KPLAVYALITSNKLNRTLCFVNSVSSANR 444 (620)
T ss_pred cchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeeccccc-chHhHHHHHHHhhcceEEEEecchHHHHH
Confidence 99999776666666666777544443 23344566778888888777 88899999999999999999999999999
Q ss_pred HHHHHh
Q 022383 288 SVFYFW 293 (298)
Q Consensus 288 l~~~L~ 293 (298)
++..|.
T Consensus 445 l~~~L~ 450 (620)
T KOG0350|consen 445 LAHVLK 450 (620)
T ss_pred HHHHHH
Confidence 999886
No 40
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=3.3e-33 Score=260.56 Aligned_cols=249 Identities=17% Similarity=0.197 Sum_probs=197.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC-----CCCeEEEEEcCcHHHH
Q 022383 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----SREVQALILSPTRELA 114 (298)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~-----~~~~~~lil~p~~~l~ 114 (298)
|++.+.+.++.. |..||+.|.++||.+.+|+|+++.||||||||+|+.+|+++.+... ..+..+|||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 789999999998 9999999999999999999999999999999999999999998665 2357999999999999
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhcc--CccCCCccEEEechhhHhhcccc
Q 022383 115 TQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLVLDESDEMLSRGF 192 (298)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~--~~~~~~l~~vViDE~h~~~~~~~ 192 (298)
+++.++++.++...|+.+...+|+++..+..+...+.+||+|+|||.|.-++... .-.+.++.+|||||+|.+.....
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 9999999999999999999999999999998899999999999999999988764 33579999999999999976643
Q ss_pred HH----HHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCC--CEEEEecCCccCcCCceEEEEEecCc--------cc
Q 022383 193 KD----QIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTD--PVKILVKRDELTLEGIKQFFVAVERE--------EW 258 (298)
Q Consensus 193 ~~----~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~ 258 (298)
+. .++++....+ +.|.|++|||..+. ....+...+. +..+..... .. ..+..+...... ..
T Consensus 167 G~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~varfL~g~~~~~~Iv~~~~-~k--~~~i~v~~p~~~~~~~~~~~~~ 241 (814)
T COG1201 167 GVQLALSLERLRELAG-DFQRIGLSATVGPP-EEVAKFLVGFGDPCEIVDVSA-AK--KLEIKVISPVEDLIYDEELWAA 241 (814)
T ss_pred chhhhhhHHHHHhhCc-ccEEEeehhccCCH-HHHHHHhcCCCCceEEEEccc-CC--cceEEEEecCCccccccchhHH
Confidence 33 3344444444 89999999999753 3344443333 444443322 11 122222222222 12
Q ss_pred hHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhc
Q 022383 259 KFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRW 296 (298)
Q Consensus 259 k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~ 296 (298)
-+..+.++++.+ ..+|||+||+..+|.++..|++.+
T Consensus 242 ~~~~i~~~v~~~--~ttLIF~NTR~~aE~l~~~L~~~~ 277 (814)
T COG1201 242 LYERIAELVKKH--RTTLIFTNTRSGAERLAFRLKKLG 277 (814)
T ss_pred HHHHHHHHHhhc--CcEEEEEeChHHHHHHHHHHHHhc
Confidence 355566666665 499999999999999999998876
No 41
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=4.7e-32 Score=254.14 Aligned_cols=242 Identities=19% Similarity=0.208 Sum_probs=182.7
Q ss_pred HHHHH-CCCCCChHHHHHHHHHhhcCC-cEEEEcCCCCchHHHHHHHHHHhhccCCCCe-EEEEEcCcHHHHHHHHHHHH
Q 022383 46 RGIYQ-YGFEKPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREV-QALILSPTRELATQTEKVIL 122 (298)
Q Consensus 46 ~~l~~-~~~~~~~~~Q~~~~~~~~~~~-~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~-~~lil~p~~~l~~q~~~~~~ 122 (298)
+.+++ .||+ |+|+|.++++.++.|+ ++++.+|||+|||.++..+++.. ......+ +.++++|+++|+.|+.+.++
T Consensus 6 ~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~~~ 83 (844)
T TIGR02621 6 EWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEEAE 83 (844)
T ss_pred HHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHHHH
Confidence 34444 5888 9999999999999998 57788999999999776555533 2223334 45557799999999999999
Q ss_pred HhhccC-----------------------CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCc--------
Q 022383 123 AIGDFI-----------------------NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-------- 171 (298)
Q Consensus 123 ~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~-------- 171 (298)
++++.+ .+++..++||.+...+...+..+++|+|+|++.+. ++.+
T Consensus 84 ~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~----sr~L~~gYg~~~ 159 (844)
T TIGR02621 84 KIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIG----SRLLFSGYGCGF 159 (844)
T ss_pred HHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHc----CCcccccccccc
Confidence 988754 47889999999998998989999999999975443 3332
Q ss_pred --------cCCCccEEEechhhHhhccccHHHHHHHHHhC--CC---CccEEEEEeeCchhHHHHHHhcCCCCEEEEecC
Q 022383 172 --------RTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL--PP---DLQVVLISATLPHEILEMTTKFMTDPVKILVKR 238 (298)
Q Consensus 172 --------~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~--~~---~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 238 (298)
.+++++++|+|||| ++.+|...+..|++.+ ++ +.|+++||||++..+......++.++..+.+..
T Consensus 160 ~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~ 237 (844)
T TIGR02621 160 KSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLK 237 (844)
T ss_pred ccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccc
Confidence 26889999999999 5788999999999975 33 269999999999888877777776777666655
Q ss_pred CccCcCCceEEEEEecCccchHHHHHHHH---hhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 239 DELTLEGIKQFFVAVEREEWKFDTLCDLY---DTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~~k~~~l~~ll---~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
......++.++ +..+... |...+...+ ....++++||||||++.|+.+++.|+..++
T Consensus 238 ~~l~a~ki~q~-v~v~~e~-Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~ 297 (844)
T TIGR02621 238 KRLAAKKIVKL-VPPSDEK-FLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF 297 (844)
T ss_pred ccccccceEEE-EecChHH-HHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC
Confidence 55555566664 3333332 433322221 123457999999999999999999987664
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=6.5e-32 Score=261.30 Aligned_cols=252 Identities=19% Similarity=0.257 Sum_probs=177.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC------CCCeEEEEEcCcHHH
Q 022383 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS------SREVQALILSPTREL 113 (298)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~------~~~~~~lil~p~~~l 113 (298)
+++.+.+.+++ +|..|+|+|.++|+.+.+|+|++++||||+|||++|.+|+++.+... ..+.++|||+|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 67788888776 78899999999999999999999999999999999999999887532 235689999999999
Q ss_pred HHHHHHHHHH-------hh----ccC-CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCc--cCCCccEE
Q 022383 114 ATQTEKVILA-------IG----DFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL--RTRAIKLL 179 (298)
Q Consensus 114 ~~q~~~~~~~-------~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~--~~~~l~~v 179 (298)
++|+.+.+.. +. ... ++++...+|+.+..+....+.+.++|+|+||++|..++....+ .++++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999886652 22 222 6788999999988877777778899999999999888866543 57899999
Q ss_pred EechhhHhhccccHHHHH----HHHHhCCCCccEEEEEeeCch--hHHHHHHhcC----CCCEEEEecCCccCcCCceEE
Q 022383 180 VLDESDEMLSRGFKDQIY----DVYRYLPPDLQVVLISATLPH--EILEMTTKFM----TDPVKILVKRDELTLEGIKQF 249 (298)
Q Consensus 180 ViDE~h~~~~~~~~~~i~----~i~~~~~~~~~~v~~SAT~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~ 249 (298)
||||+|.+.+..+...+. .+....+...|++++|||+++ .+..++.... ..+..+... .......+...
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~-~~~k~~~i~v~ 255 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDA-RFVKPFDIKVI 255 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEcc-CCCccceEEEe
Confidence 999999998766555444 333444467899999999976 3333332221 112222211 11111111100
Q ss_pred -----EEEecCcc---chHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 250 -----FVAVEREE---WKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 250 -----~~~~~~~~---~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
........ .....+..+++ ..+++||||||++.|+.++..|+..
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~ 307 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKR 307 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 00011111 11223333333 2479999999999999999999874
No 43
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.4e-32 Score=257.99 Aligned_cols=248 Identities=17% Similarity=0.225 Sum_probs=183.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHH
Q 022383 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (298)
Q Consensus 34 ~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (298)
.|++++|++.+.+.+.+.+|. ++++|.++++.+.+|+|+++++|||+|||+++.++++..+.. +.++||++|+++|
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~---~~k~v~i~P~raL 77 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA---GLKSIYIVPLRSL 77 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh---CCcEEEEechHHH
Confidence 578899999999999999988 999999999999999999999999999999999999988764 4589999999999
Q ss_pred HHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccH
Q 022383 114 ATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 193 (298)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~ 193 (298)
+.|+++.++++. ..+.++....|+...... ....++|+|+||+++..+++.....++++++||+||+|.+.+.+++
T Consensus 78 a~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg 153 (674)
T PRK01172 78 AMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRG 153 (674)
T ss_pred HHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCcc
Confidence 999999998764 357888888887654322 2245799999999999998887677899999999999999887777
Q ss_pred HHHHHHHH---hCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEE-----EecCccchHHHHHH
Q 022383 194 DQIYDVYR---YLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFV-----AVEREEWKFDTLCD 265 (298)
Q Consensus 194 ~~i~~i~~---~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-----~~~~~~~k~~~l~~ 265 (298)
..++.++. ..+++.|++++|||+++. .++..+ +..+. +. ....+..+..... ..+........+..
T Consensus 154 ~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~w-l~~~~-~~---~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~ 227 (674)
T PRK01172 154 PTLETVLSSARYVNPDARILALSATVSNA-NELAQW-LNASL-IK---SNFRPVPLKLGILYRKRLILDGYERSQVDINS 227 (674)
T ss_pred HHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHH-hCCCc-cC---CCCCCCCeEEEEEecCeeeecccccccccHHH
Confidence 77776654 445689999999999764 344332 22111 00 0011111111010 01111101111223
Q ss_pred HHhh--CCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 266 LYDT--LTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 266 ll~~--~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
++.. ..++++||||++++.|+.++..|...
T Consensus 228 ~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~ 259 (674)
T PRK01172 228 LIKETVNDGGQVLVFVSSRKNAEDYAEMLIQH 259 (674)
T ss_pred HHHHHHhCCCcEEEEeccHHHHHHHHHHHHHh
Confidence 3332 34579999999999999999998764
No 44
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.9e-31 Score=251.84 Aligned_cols=251 Identities=15% Similarity=0.183 Sum_probs=182.0
Q ss_pred Ccc--cCCCCHHHHHHHHH-CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCc
Q 022383 34 SFD--AMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (298)
Q Consensus 34 ~~~--~l~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (298)
.|. .+++...+...+++ +|+..++|.|.++|+.++.|+|+++++|||+|||+||++|++.. +..+|||+|+
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPL 509 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPL 509 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCH
Confidence 455 46777788888777 78999999999999999999999999999999999999999864 3479999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh------cCCcEEEeChHHHHH---HHhc--cCccCCCccEE
Q 022383 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE------HGVHVVSGTPGRVCD---MIKR--KTLRTRAIKLL 179 (298)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ilV~Tp~~l~~---~~~~--~~~~~~~l~~v 179 (298)
++|+.++...+.. .++....+.++....++...+. ..++|+++||+++.. +++. .......+.+|
T Consensus 510 iSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslI 585 (1195)
T PLN03137 510 VSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARF 585 (1195)
T ss_pred HHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcccccee
Confidence 9999876665554 3788888999887665544332 468999999999863 2221 11123568999
Q ss_pred EechhhHhhccc--cHHHHHHH--HHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecC
Q 022383 180 VLDESDEMLSRG--FKDQIYDV--YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER 255 (298)
Q Consensus 180 ViDE~h~~~~~~--~~~~i~~i--~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 255 (298)
||||||++.+|| |+..+..+ ++...+..|++++|||+++.+...+...+......... .....+++. +...+.
T Consensus 586 VIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~RpNL~--y~Vv~k 662 (1195)
T PLN03137 586 VIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRPNLW--YSVVPK 662 (1195)
T ss_pred ccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCccceE--EEEecc
Confidence 999999999997 77777653 33334578899999999988777555544322111111 222333332 222333
Q ss_pred ccchHHHHHHHHhhC-CCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 256 EEWKFDTLCDLYDTL-TITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 256 ~~~k~~~l~~ll~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
.......+..++... ...+.||||+|+++|+.+++.|+..|+
T Consensus 663 ~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gi 705 (1195)
T PLN03137 663 TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGH 705 (1195)
T ss_pred chhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCC
Confidence 222345566666543 356899999999999999999998775
No 45
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.9e-31 Score=241.44 Aligned_cols=232 Identities=16% Similarity=0.244 Sum_probs=169.2
Q ss_pred HCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 022383 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (298)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (298)
.+||..|+|+|.++++.+++|+|+++++|||+|||+||++|++.. +..+||++|+++|+.|+.+.++.. +
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~~~l~~~----g 75 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQVLQLKAS----G 75 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHHHHHHHc----C
Confidence 379999999999999999999999999999999999999998863 347999999999999999888764 6
Q ss_pred ceEEEEEcCCchHHHHH---Hh-hcCCcEEEeChHHHHHHHh-ccCc-cCCCccEEEechhhHhhccc--cHHHHHHH--
Q 022383 130 IQAHACVGGKSVGEDIR---KL-EHGVHVVSGTPGRVCDMIK-RKTL-RTRAIKLLVLDESDEMLSRG--FKDQIYDV-- 199 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~---~~-~~~~~ilV~Tp~~l~~~~~-~~~~-~~~~l~~vViDE~h~~~~~~--~~~~i~~i-- 199 (298)
+....+.++....+... .+ ...++|+++||+++..... ...+ ...++++|||||||++.+|+ |...+..+
T Consensus 76 i~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 76 IPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 77777777766543322 22 3458999999999764221 1112 56789999999999999886 56665543
Q ss_pred -HHhCCCCccEEEEEeeCchhHHHHHHhcC--CCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHh-hCCCCcE
Q 022383 200 -YRYLPPDLQVVLISATLPHEILEMTTKFM--TDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-TLTITQA 275 (298)
Q Consensus 200 -~~~~~~~~~~v~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~-~~~~~k~ 275 (298)
.+.+ ++.+++++|||+++.+...+...+ .+|..+... ....++...+ ..........+..++. ..+++++
T Consensus 156 l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s---~~r~nl~~~v--~~~~~~~~~~l~~~l~~~~~~~~~ 229 (470)
T TIGR00614 156 LKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTS---FDRPNLYYEV--RRKTPKILEDLLRFIRKEFKGKSG 229 (470)
T ss_pred HHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC---CCCCCcEEEE--EeCCccHHHHHHHHHHHhcCCCce
Confidence 3334 578899999999988766554443 344443322 2222332222 2222224555666665 4555677
Q ss_pred EEEecchhhHHHHHHHHhhhcC
Q 022383 276 VIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 276 lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
||||+|+++|+.+++.|+..|+
T Consensus 230 IIF~~s~~~~e~la~~L~~~g~ 251 (470)
T TIGR00614 230 IIYCPSRKKSEQVTASLQNLGI 251 (470)
T ss_pred EEEECcHHHHHHHHHHHHhcCC
Confidence 9999999999999999998775
No 46
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.2e-30 Score=256.06 Aligned_cols=241 Identities=19% Similarity=0.220 Sum_probs=184.6
Q ss_pred HHHHHHH-CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHH
Q 022383 44 LLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (298)
Q Consensus 44 i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 122 (298)
..+.+++ .|+ .|+++|..+++.++.|+|++++||||+|||. |.+++...+.. .+.+++||+||++|+.|+.+.++
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--KGKKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHHH
Confidence 3334444 466 6999999999999999999999999999996 44455444433 36789999999999999999999
Q ss_pred HhhccCCceEEEEEcCCch-----HHHHHHhh-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhc-------
Q 022383 123 AIGDFINIQAHACVGGKSV-----GEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS------- 189 (298)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~------- 189 (298)
+++...++.+..+.++... ......+. ++++|+|+||++|.+.+. .+...+++++|+||||++++
T Consensus 145 ~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~ 222 (1176)
T PRK09401 145 KFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDK 222 (1176)
T ss_pred HHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhh
Confidence 9998888887777766432 22233344 468999999999998776 45566799999999999986
Q ss_pred ----cccH-HHHHHHHHhCCC------------------------CccEEEEEeeCchh-HHHHHHhcCCCCEEEEecCC
Q 022383 190 ----RGFK-DQIYDVYRYLPP------------------------DLQVVLISATLPHE-ILEMTTKFMTDPVKILVKRD 239 (298)
Q Consensus 190 ----~~~~-~~i~~i~~~~~~------------------------~~~~v~~SAT~~~~-~~~~~~~~~~~~~~~~~~~~ 239 (298)
.||. ..+..+++.++. ..|++++|||+++. +.. ..+.++..+.+...
T Consensus 223 ~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~ 299 (1176)
T PRK09401 223 LLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSP 299 (1176)
T ss_pred HHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCc
Confidence 4564 567777766654 68999999999864 332 12334555666555
Q ss_pred ccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhh---HHHHHHHHhhhcC
Q 022383 240 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRK---IYYSVFYFWIRWI 297 (298)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~---~~~l~~~L~~~~~ 297 (298)
.....++.+.++.++ ++...+..+++... .++||||++++. |+.++++|+..|+
T Consensus 300 ~~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi 356 (1176)
T PRK09401 300 VFYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGI 356 (1176)
T ss_pred ccccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCC
Confidence 566678888888765 37778888887654 689999999888 9999999999886
No 47
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.98 E-value=2.1e-30 Score=243.10 Aligned_cols=235 Identities=16% Similarity=0.232 Sum_probs=177.0
Q ss_pred HHHHH-CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 46 RGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 46 ~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
+.|++ +||..+++.|.++++.+++|+|+++++|||+|||+||++|++.. +..++|++|+++|+.|+.+.++.+
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l~~~ 76 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQLRAA 76 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHHHHc
Confidence 34555 79999999999999999999999999999999999999998853 336899999999999999988875
Q ss_pred hccCCceEEEEEcCCchHHHHHH----hhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc--cHHHHHH
Q 022383 125 GDFINIQAHACVGGKSVGEDIRK----LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYD 198 (298)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~--~~~~i~~ 198 (298)
++.+..++++.+..+.... ..+.++|+++||+++........+...++++|||||+|++.+|+ |+..+..
T Consensus 77 ----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~ 152 (591)
T TIGR01389 77 ----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQR 152 (591)
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHH
Confidence 6778888888766544322 23568999999999875433334556789999999999999886 6666555
Q ss_pred H---HHhCCCCccEEEEEeeCchhHHHHHHhcCC--CCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhCCCC
Q 022383 199 V---YRYLPPDLQVVLISATLPHEILEMTTKFMT--DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIT 273 (298)
Q Consensus 199 i---~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~ 273 (298)
+ ...++ ..+++++|||.++.....+...+. ++..+. . .....++. +...... .+...+..++....+.
T Consensus 153 l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~--~~~r~nl~--~~v~~~~-~~~~~l~~~l~~~~~~ 225 (591)
T TIGR01389 153 LGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI-T--SFDRPNLR--FSVVKKN-NKQKFLLDYLKKHRGQ 225 (591)
T ss_pred HHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-c--CCCCCCcE--EEEEeCC-CHHHHHHHHHHhcCCC
Confidence 4 33444 456999999999887765555543 333322 1 12222332 2222223 3677788888877778
Q ss_pred cEEEEecchhhHHHHHHHHhhhcC
Q 022383 274 QAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 274 k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
++||||+|++.|+.+++.|+..|+
T Consensus 226 ~~IIf~~sr~~~e~la~~L~~~g~ 249 (591)
T TIGR01389 226 SGIIYASSRKKVEELAERLESQGI 249 (591)
T ss_pred CEEEEECcHHHHHHHHHHHHhCCC
Confidence 999999999999999999988765
No 48
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.98 E-value=4.2e-30 Score=240.69 Aligned_cols=242 Identities=17% Similarity=0.255 Sum_probs=176.1
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHH
Q 022383 39 GIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (298)
Q Consensus 39 ~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 117 (298)
+.+......|++ +||..++|+|.++++.+++|+|+++++|||+|||+||++|++.. ...+||++|+++|+.|+
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dq 81 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQ 81 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHH
Confidence 344455556655 69999999999999999999999999999999999999999864 33689999999999999
Q ss_pred HHHHHHhhccCCceEEEEEcCCchHHHHHH---h-hcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc--
Q 022383 118 EKVILAIGDFINIQAHACVGGKSVGEDIRK---L-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-- 191 (298)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~-- 191 (298)
.+.++.. ++....+.++......... + .+..+++++||+++........+...++++|||||||++.+|+
T Consensus 82 v~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~ 157 (607)
T PRK11057 82 VDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHD 157 (607)
T ss_pred HHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCc
Confidence 9988765 5677777777665543322 2 2457899999999874222223344588999999999999886
Q ss_pred cHHHHHHH---HHhCCCCccEEEEEeeCchhHHHHHHhc--CCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHH
Q 022383 192 FKDQIYDV---YRYLPPDLQVVLISATLPHEILEMTTKF--MTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 266 (298)
Q Consensus 192 ~~~~i~~i---~~~~~~~~~~v~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 266 (298)
|...+..+ ...+ ++.+++++|||+++.....+... +.+|...... ...+++.. ....... +...+..+
T Consensus 158 fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~---~~r~nl~~--~v~~~~~-~~~~l~~~ 230 (607)
T PRK11057 158 FRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS---FDRPNIRY--TLVEKFK-PLDQLMRY 230 (607)
T ss_pred ccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC---CCCCccee--eeeeccc-hHHHHHHH
Confidence 55555443 3344 47899999999988765544333 3344433321 22223322 2222222 56667777
Q ss_pred HhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 267 YDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 267 l~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
+....++++||||+|+++|+.+++.|++.|+
T Consensus 231 l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~ 261 (607)
T PRK11057 231 VQEQRGKSGIIYCNSRAKVEDTAARLQSRGI 261 (607)
T ss_pred HHhcCCCCEEEEECcHHHHHHHHHHHHhCCC
Confidence 7777778999999999999999999998775
No 49
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=1.9e-31 Score=234.71 Aligned_cols=270 Identities=24% Similarity=0.329 Sum_probs=232.9
Q ss_pred eecccCCccccCcccC----CCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC
Q 022383 23 FETTEGVEAITSFDAM----GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS 98 (298)
Q Consensus 23 ~~~~~~~~~~~~~~~l----~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~ 98 (298)
+.+...+.++.+|.++ ..+..+++.+...+|..|+|.|.+++|.++.+++++.|+|||+|||++|.+|++.++...
T Consensus 122 v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~ 201 (593)
T KOG0344|consen 122 VDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDL 201 (593)
T ss_pred ccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHh
Confidence 3566668888899974 689999999999999999999999999999999999999999999999999999988543
Q ss_pred -----CCCeEEEEEcCcHHHHHHHHHHHHHhh--ccCCceEEEEEcCCchHHH-HHHhhcCCcEEEeChHHHHHHHhccC
Q 022383 99 -----SREVQALILSPTRELATQTEKVILAIG--DFINIQAHACVGGKSVGED-IRKLEHGVHVVSGTPGRVCDMIKRKT 170 (298)
Q Consensus 99 -----~~~~~~lil~p~~~l~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ilV~Tp~~l~~~~~~~~ 170 (298)
..+.+++|+.|+++|+.|++..+.++. ...+.+...+......... .......++++|+||.++...+....
T Consensus 202 ~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~ 281 (593)
T KOG0344|consen 202 SQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGK 281 (593)
T ss_pred hcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCC
Confidence 346799999999999999999999998 5555555554444222221 11222457999999999999888764
Q ss_pred --ccCCCccEEEechhhHhhcc-ccHHHHHHHHHhCC-CCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCc
Q 022383 171 --LRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGI 246 (298)
Q Consensus 171 --~~~~~l~~vViDE~h~~~~~-~~~~~i~~i~~~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 246 (298)
+++.++.++|+||+|++.+. .|..++..++..+. ++..+-+||||++..+++|+.....++..+.+.........+
T Consensus 282 ~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V 361 (593)
T KOG0344|consen 282 LNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETV 361 (593)
T ss_pred ccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhh
Confidence 78999999999999999999 88888888887765 567788999999999999999999999999998888888889
Q ss_pred eEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHH
Q 022383 247 KQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYF 292 (298)
Q Consensus 247 ~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L 292 (298)
.|..++|..+..|.-++.+++...-..++|||+.+.+.|..|++.|
T Consensus 362 ~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L 407 (593)
T KOG0344|consen 362 DQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEEL 407 (593)
T ss_pred hhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHh
Confidence 9999999999989999999999887789999999999999999998
No 50
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.97 E-value=3.5e-30 Score=204.35 Aligned_cols=165 Identities=27% Similarity=0.474 Sum_probs=144.0
Q ss_pred hHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEE
Q 022383 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACV 136 (298)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~ 136 (298)
||+|.++++.+.+|+++++.+|||+|||++|+++++..+... ...++++++|+++|++|+.+.++++....++++..++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~ 79 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLH 79 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEES
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccccccc
Confidence 689999999999999999999999999999999999988776 4458999999999999999999999888788999999
Q ss_pred cCCchH-HHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCC--CCccEEEEE
Q 022383 137 GGKSVG-EDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP--PDLQVVLIS 213 (298)
Q Consensus 137 ~~~~~~-~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~--~~~~~v~~S 213 (298)
++.... .....+.++++|+|+||++|..++.....++.++++|||||+|.+..+.+...+..+.+.+. .+.|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~S 159 (169)
T PF00270_consen 80 GGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLS 159 (169)
T ss_dssp TTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEE
T ss_pred ccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEe
Confidence 988765 33444556799999999999999988656778899999999999998888888888888873 368999999
Q ss_pred eeCchhHHH
Q 022383 214 ATLPHEILE 222 (298)
Q Consensus 214 AT~~~~~~~ 222 (298)
||+++.++.
T Consensus 160 AT~~~~~~~ 168 (169)
T PF00270_consen 160 ATLPSNVEK 168 (169)
T ss_dssp SSSTHHHHH
T ss_pred eCCChhHhh
Confidence 999966553
No 51
>PRK14701 reverse gyrase; Provisional
Probab=99.97 E-value=5.2e-29 Score=249.57 Aligned_cols=244 Identities=17% Similarity=0.187 Sum_probs=183.3
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHH
Q 022383 43 DLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (298)
Q Consensus 43 ~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 121 (298)
++.+.+++ +|| .|++.|+.+++.+++|+|++++||||+|||++++++++.... .+.+++||+||++|+.|+.+.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~---~g~~aLVl~PTreLa~Qi~~~l 142 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL---KGKKCYIILPTTLLVKQTVEKI 142 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh---cCCeEEEEECHHHHHHHHHHHH
Confidence 55556666 799 599999999999999999999999999999976666554422 3568999999999999999999
Q ss_pred HHhhccC--CceEEEEEcCCchHHHH---HHhh-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc-----
Q 022383 122 LAIGDFI--NIQAHACVGGKSVGEDI---RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR----- 190 (298)
Q Consensus 122 ~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~----- 190 (298)
+.++... ++++..++|+.+..++. ..+. +.++|+|+||+++...+... . ..+++++|+||||+|+++
T Consensus 143 ~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~~knid 220 (1638)
T PRK14701 143 ESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKASKNID 220 (1638)
T ss_pred HHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccccccccc
Confidence 9988765 45677888988766553 2333 35899999999988766542 2 278999999999999873
Q ss_pred ------ccHHHHHH----HHH----------------------hCCCCcc-EEEEEeeCchhHHHHHHhcCCCCEEEEec
Q 022383 191 ------GFKDQIYD----VYR----------------------YLPPDLQ-VVLISATLPHEILEMTTKFMTDPVKILVK 237 (298)
Q Consensus 191 ------~~~~~i~~----i~~----------------------~~~~~~~-~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 237 (298)
||.+.+.. +++ .+++..| .+++|||+++... ...++.++..+.+.
T Consensus 221 ~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~~l~f~v~ 298 (1638)
T PRK14701 221 RSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRELLGFEVG 298 (1638)
T ss_pred hhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhcCeEEEec
Confidence 67666653 322 2344455 5779999986311 11234567777777
Q ss_pred CCccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhh---HHHHHHHHhhhcC
Q 022383 238 RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRK---IYYSVFYFWIRWI 297 (298)
Q Consensus 238 ~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~---~~~l~~~L~~~~~ 297 (298)
.......++.+.++..+... + ..+..+++.. +.++||||+|++. |+.+++.|+..|+
T Consensus 299 ~~~~~lr~i~~~yi~~~~~~-k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi 358 (1638)
T PRK14701 299 SGRSALRNIVDVYLNPEKII-K-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGF 358 (1638)
T ss_pred CCCCCCCCcEEEEEECCHHH-H-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCC
Confidence 66666778888888765443 4 4677777765 4789999999886 5899999999886
No 52
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=7e-29 Score=237.07 Aligned_cols=248 Identities=19% Similarity=0.261 Sum_probs=189.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHH
Q 022383 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (298)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (298)
....+..+|.+.|+..|+++|.+++..+.+|+|++|++|||||||+||++|+++++...+.. ++|+|.||++|++++.+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~ 133 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAE 133 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHH
Confidence 34566889999999999999999999999999999999999999999999999998876555 89999999999999999
Q ss_pred HHHHhhccCC--ceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhcc----CccCCCccEEEechhhHhhccccH
Q 022383 120 VILAIGDFIN--IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK----TLRTRAIKLLVLDESDEMLSRGFK 193 (298)
Q Consensus 120 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~----~~~~~~l~~vViDE~h~~~~~~~~ 193 (298)
+++++....+ +....+.|++...+....+.+.++|+++||++|..++... ...++++++||+||+|.+ ...++
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY-rGv~G 212 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY-RGVQG 212 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec-cccch
Confidence 9999988776 7888889998887777778899999999999999965442 234588999999999986 33355
Q ss_pred HHHHHHHHhC-------CCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecC--------ccc
Q 022383 194 DQIYDVYRYL-------PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER--------EEW 258 (298)
Q Consensus 194 ~~i~~i~~~~-------~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~ 258 (298)
.++..+++++ +.+.|+|+.|||+.+. .++...+.+......+. .+..+.+....+..-+. ...
T Consensus 213 S~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~-~~g~~~~~~~~~~~~p~~~~~~~~~r~s 290 (851)
T COG1205 213 SEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVD-EDGSPRGLRYFVRREPPIRELAESIRRS 290 (851)
T ss_pred hHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeecc-CCCCCCCceEEEEeCCcchhhhhhcccc
Confidence 5444443333 4579999999999876 55666677766666432 22333333333333330 112
Q ss_pred hHHHHHHHHhhC--CCCcEEEEecchhhHHHHHHH
Q 022383 259 KFDTLCDLYDTL--TITQAVIFCNTKRKIYYSVFY 291 (298)
Q Consensus 259 k~~~l~~ll~~~--~~~k~lIf~~s~~~~~~l~~~ 291 (298)
+...+..+.... .+-++|+|+.+++.++.++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~ 325 (851)
T COG1205 291 ALAELATLAALLVRNGIQTLVFFRSRKQVELLYLS 325 (851)
T ss_pred hHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhc
Confidence 444444444432 446999999999999999743
No 53
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.97 E-value=4.2e-29 Score=235.58 Aligned_cols=249 Identities=17% Similarity=0.192 Sum_probs=184.4
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHhh-cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHH
Q 022383 39 GIKDDLLRGIYQYGFEKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (298)
Q Consensus 39 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~-~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 117 (298)
.+.+.+...++..++.++.+.|+.++.... +++|+++++|||+|||+.+++.+++.+... +.+++|+||+++|+.+.
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek 92 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEK 92 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHH
Confidence 477888888888999888888888887754 569999999999999999999999998875 45899999999999999
Q ss_pred HHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHH
Q 022383 118 EKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (298)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~ 197 (298)
++.++ ....+|+++...+|+...... ...+++|+|+|||++..++++.......+++|||||+|.+.+...+..++
T Consensus 93 ~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE 168 (766)
T COG1204 93 YEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLE 168 (766)
T ss_pred HHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceeh
Confidence 99999 445669999999999775442 22458999999999999999987788999999999999998876666666
Q ss_pred HHHHhCC---CCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccC-cCCceEEEEEecCcc-----chHH-HHHHHH
Q 022383 198 DVYRYLP---PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELT-LEGIKQFFVAVEREE-----WKFD-TLCDLY 267 (298)
Q Consensus 198 ~i~~~~~---~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~-----~k~~-~l~~ll 267 (298)
.++.+.+ ...|++++|||+|+. .++..+...++..-...+.... .....+.+....... ...+ .+..++
T Consensus 169 ~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~ 247 (766)
T COG1204 169 SIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVL 247 (766)
T ss_pred hHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHH
Confidence 6665554 348999999999986 4445444434332111111111 111222222222111 0122 233333
Q ss_pred hh-CCCCcEEEEecchhhHHHHHHHHhh
Q 022383 268 DT-LTITQAVIFCNTKRKIYYSVFYFWI 294 (298)
Q Consensus 268 ~~-~~~~k~lIf~~s~~~~~~l~~~L~~ 294 (298)
.. ..++++||||+|++.+...|+.|++
T Consensus 248 ~~~~~~~qvLvFv~sR~~a~~~A~~l~~ 275 (766)
T COG1204 248 ESLAEGGQVLVFVHSRKEAEKTAKKLRI 275 (766)
T ss_pred HHHhcCCeEEEEEecCchHHHHHHHHHH
Confidence 32 3457999999999999999999984
No 54
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.96 E-value=9.2e-29 Score=217.06 Aligned_cols=257 Identities=18% Similarity=0.198 Sum_probs=204.1
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 33 ~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
...++|.++++....|+..|++.+.|+|.-++.. ++.|+|.+++++|+||||+...++-+..+... +.+.+|++|..
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~--g~KmlfLvPLV 271 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSG--GKKMLFLVPLV 271 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhC--CCeEEEEehhH
Confidence 5778999999999999999999999999999987 88999999999999999999998888887765 55899999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEEcCCchHHHH----HHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHh
Q 022383 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDI----RKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (298)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~ 187 (298)
+||+|-++.|+.--..+++.+..-.|........ ..-..+.||||+|-+-+..+++.+ .++.++..|||||+|.+
T Consensus 272 ALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL 350 (830)
T COG1202 272 ALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTL 350 (830)
T ss_pred HhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeec
Confidence 9999999999876677788887777643222111 111245799999999999999987 77899999999999998
Q ss_pred hccccH---HHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHH
Q 022383 188 LSRGFK---DQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLC 264 (298)
Q Consensus 188 ~~~~~~---~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 264 (298)
-+...+ +-+..-++++-+..|+|.+|||+.+. +.+.+.+..+++.+. ..+..++...+++.++..|.+.+.
T Consensus 351 ~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~-----~RPVplErHlvf~~~e~eK~~ii~ 424 (830)
T COG1202 351 EDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYD-----ERPVPLERHLVFARNESEKWDIIA 424 (830)
T ss_pred cchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeec-----CCCCChhHeeeeecCchHHHHHHH
Confidence 765433 33444455666789999999999776 555655544444332 334456777778887766999888
Q ss_pred HHHhhC------C--CCcEEEEecchhhHHHHHHHHhhhcCC
Q 022383 265 DLYDTL------T--ITQAVIFCNTKRKIYYSVFYFWIRWIG 298 (298)
Q Consensus 265 ~ll~~~------~--~~k~lIf~~s~~~~~~l~~~L~~~~~~ 298 (298)
.+.+.. + .++||||.+|++.|+.+|.+|..+|+.
T Consensus 425 ~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~ 466 (830)
T COG1202 425 RLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLK 466 (830)
T ss_pred HHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcc
Confidence 887532 1 359999999999999999999988863
No 55
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.96 E-value=6e-28 Score=237.44 Aligned_cols=242 Identities=17% Similarity=0.231 Sum_probs=176.7
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHH
Q 022383 43 DLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (298)
Q Consensus 43 ~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 122 (298)
+..+.+.+.....|+++|+.+++.++.|+|++++||||+|||. |.+++...+.. .+++++||+||++|+.|+.+.++
T Consensus 66 ~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 66 EFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--KGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeCHHHHHHHHHHHHH
Confidence 4555555544457999999999999999999999999999996 66666655543 26789999999999999999999
Q ss_pred HhhccCCceEE---EEEcCCchHHHH---HHhh-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhc------
Q 022383 123 AIGDFINIQAH---ACVGGKSVGEDI---RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS------ 189 (298)
Q Consensus 123 ~~~~~~~~~~~---~~~~~~~~~~~~---~~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~------ 189 (298)
++....++... .++|+.+..++. ..+. ++++|+|+||++|...+..- .. +++++|+||||.|++
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~~L~~~k~vd 219 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDALLKASKNVD 219 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHhhhhccccHH
Confidence 99887666543 467887765432 2333 45899999999998876641 12 899999999999987
Q ss_pred -----cccHHH-HHHHH----------------------HhCCCCcc--EEEEEee-CchhHHHHHHhcCCCCEEEEecC
Q 022383 190 -----RGFKDQ-IYDVY----------------------RYLPPDLQ--VVLISAT-LPHEILEMTTKFMTDPVKILVKR 238 (298)
Q Consensus 190 -----~~~~~~-i~~i~----------------------~~~~~~~~--~v~~SAT-~~~~~~~~~~~~~~~~~~~~~~~ 238 (298)
.||... +..++ +.+++..| ++++||| .|..... .++.++..+.+..
T Consensus 220 ~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~ 296 (1171)
T TIGR01054 220 KLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGG 296 (1171)
T ss_pred HHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecC
Confidence 356543 44432 23444455 5678999 4554432 2344555566665
Q ss_pred CccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecch---hhHHHHHHHHhhhcC
Q 022383 239 DELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTK---RKIYYSVFYFWIRWI 297 (298)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~---~~~~~l~~~L~~~~~ 297 (298)
......++.+.+...+. +...+..+++.. +.++||||+++ +.|+.+++.|++.|+
T Consensus 297 ~~~~~r~I~~~~~~~~~---~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~ 354 (1171)
T TIGR01054 297 GSDTLRNVVDVYVEDED---LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGV 354 (1171)
T ss_pred ccccccceEEEEEeccc---HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCc
Confidence 55566778887765442 244566777654 36899999999 999999999998876
No 56
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.96 E-value=1.3e-27 Score=234.43 Aligned_cols=237 Identities=17% Similarity=0.160 Sum_probs=178.9
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHhhcC------CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHH
Q 022383 41 KDDLLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (298)
Q Consensus 41 ~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 114 (298)
..+..+....+.| .|++.|.++++.+..+ .|++++|+||+|||.+|+.+++..+.. +.+++|++||++|+
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g~qvlvLvPT~eLA 662 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---HKQVAVLVPTTLLA 662 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHH
Confidence 3455666677888 5999999999999876 799999999999999999888777643 56899999999999
Q ss_pred HHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh----cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc
Q 022383 115 TQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (298)
Q Consensus 115 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~ 190 (298)
.|+++.+++.....++++..++|+.+..++...+. +.++|+|+||+.+ . ..+.+++++++||||+|++
T Consensus 663 ~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEahrf--- 734 (1147)
T PRK10689 663 QQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEEHRF--- 734 (1147)
T ss_pred HHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEechhhc---
Confidence 99999999877666788888888877666554332 4689999999643 2 3456789999999999997
Q ss_pred ccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhC
Q 022383 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (298)
Q Consensus 191 ~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~ 270 (298)
++. ....++.++.++|++++|||+.+....+....+.++..+...+.. ...+.+.+........+...+..+.
T Consensus 735 G~~--~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~~k~~il~el~--- 807 (1147)
T PRK10689 735 GVR--HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLVVREAILREIL--- 807 (1147)
T ss_pred chh--HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHHHHHHHHHHHh---
Confidence 222 234456777899999999999887777777777788777654332 2335555444332221223333332
Q ss_pred CCCcEEEEecchhhHHHHHHHHhhhc
Q 022383 271 TITQAVIFCNTKRKIYYSVFYFWIRW 296 (298)
Q Consensus 271 ~~~k~lIf~~s~~~~~~l~~~L~~~~ 296 (298)
.+++++||||+++.++.+++.|+...
T Consensus 808 r~gqv~vf~n~i~~ie~la~~L~~~~ 833 (1147)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELV 833 (1147)
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 57
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.96 E-value=1.5e-27 Score=229.37 Aligned_cols=237 Identities=18% Similarity=0.147 Sum_probs=173.8
Q ss_pred CCHHHHHHHHH-CCCCCChHHHHHHHHHhhcC------CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHH
Q 022383 40 IKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (298)
Q Consensus 40 l~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~------~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (298)
.+..+...+.+ ++|+ |++.|.++++.+.++ .|.+++||||+|||.+|+.+++..+.. +.+++|++||++
T Consensus 436 ~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT~~ 511 (926)
T TIGR00580 436 PDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPTTL 511 (926)
T ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCcHH
Confidence 34455555544 6785 999999999999874 799999999999999999999988765 468999999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEcCCchHHHHH---Hhh-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhh
Q 022383 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~ 188 (298)
|+.|+++.++++....++++..++|+.+..+... .+. +.++|+||||.. + ...+.+++++++||||+|++.
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVIDEahrfg 586 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLIIDEEQRFG 586 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEeecccccc
Confidence 9999999999988888889988888876544332 333 358999999942 2 345678999999999999852
Q ss_pred ccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHh
Q 022383 189 SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (298)
Q Consensus 189 ~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~ 268 (298)
......++.++.++|+++||||+.+....+......++..+...+.. ...+..++....... ....+..-
T Consensus 587 -----v~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t~v~~~~~~~-i~~~i~~e-- 656 (926)
T TIGR00580 587 -----VKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRTFVMEYDPEL-VREAIRRE-- 656 (926)
T ss_pred -----hhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEEEEEecCHHH-HHHHHHHH--
Confidence 23345566677789999999998776666555555666666554322 223454444322111 11122221
Q ss_pred hCCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 269 TLTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 269 ~~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
...+++++||||+++.++.+++.|+..
T Consensus 657 l~~g~qv~if~n~i~~~e~l~~~L~~~ 683 (926)
T TIGR00580 657 LLRGGQVFYVHNRIESIEKLATQLREL 683 (926)
T ss_pred HHcCCeEEEEECCcHHHHHHHHHHHHh
Confidence 224579999999999999999999875
No 58
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=4.2e-27 Score=232.46 Aligned_cols=218 Identities=16% Similarity=0.174 Sum_probs=154.5
Q ss_pred EEcCCCCchHHHHHHHHHHhhccC----------CCCeEEEEEcCcHHHHHHHHHHHHHhh------------ccCCceE
Q 022383 75 AQAQSGTGKTSMIALTVCQTVDTS----------SREVQALILSPTRELATQTEKVILAIG------------DFINIQA 132 (298)
Q Consensus 75 i~~pTG~GKT~~~~~~~~~~~~~~----------~~~~~~lil~p~~~l~~q~~~~~~~~~------------~~~~~~~ 132 (298)
|++|||||||+||.+|+++.+... ..+.++|||+|+++|++|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999987542 235799999999999999999887521 1247889
Q ss_pred EEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhcc-CccCCCccEEEechhhHhhcccc----HHHHHHHHHhCCCCc
Q 022383 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDESDEMLSRGF----KDQIYDVYRYLPPDL 207 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~-~~~~~~l~~vViDE~h~~~~~~~----~~~i~~i~~~~~~~~ 207 (298)
...+|+++..++.+.+.+.++|+|+||++|..++.++ ...++++++|||||+|.+.+..+ ...+..+...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 9999999988887777788999999999999987653 34689999999999999986543 345566666667789
Q ss_pred cEEEEEeeCchhHHHHHHhcCC-CCEEEEecCCccCcCCceEEEEEecCcc-------------------chH-HHHHHH
Q 022383 208 QVVLISATLPHEILEMTTKFMT-DPVKILVKRDELTLEGIKQFFVAVEREE-------------------WKF-DTLCDL 266 (298)
Q Consensus 208 ~~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------------~k~-~~l~~l 266 (298)
|+|++|||+++. +.....+.. .+..+.. ........+. .++...... ... .....+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv~-~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVVN-PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEEC-CCCCcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999873 444443333 3555432 2222222222 222221100 000 011122
Q ss_pred Hhh-CCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 267 YDT-LTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 267 l~~-~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
+.. ....++||||||++.|+.++..|++.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~ 267 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNEL 267 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHh
Confidence 322 23479999999999999999999764
No 59
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.95 E-value=3.5e-26 Score=216.62 Aligned_cols=234 Identities=19% Similarity=0.175 Sum_probs=162.3
Q ss_pred HHHHHHCCCCCChHHHHHHHHHhhcC------CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHH
Q 022383 45 LRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (298)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (298)
......++|. |++.|.++++.+.++ .+.+++||||||||++|++|++..+.. +.+++|++||++|+.|++
T Consensus 252 ~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~---g~q~lilaPT~~LA~Q~~ 327 (681)
T PRK10917 252 KKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA---GYQAALMAPTEILAEQHY 327 (681)
T ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEeccHHHHHHHH
Confidence 3344556775 999999999999876 489999999999999999999988754 668999999999999999
Q ss_pred HHHHHhhccCCceEEEEEcCCchHHHH---HHhh-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHH
Q 022383 119 KVILAIGDFINIQAHACVGGKSVGEDI---RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKD 194 (298)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~ 194 (298)
+.++++....++++..++|+.+..+.. ..+. +.++|+||||+.+.. .+.+++++++|+||+|++...
T Consensus 328 ~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~---- 398 (681)
T PRK10917 328 ENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE---- 398 (681)
T ss_pred HHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH----
Confidence 999999988899999999998764433 3333 359999999977642 456789999999999996322
Q ss_pred HHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhCCCCc
Q 022383 195 QIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQ 274 (298)
Q Consensus 195 ~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k 274 (298)
.+..+......+++++||||+.+....+......+...+...+ .....+...+.........++.+...+ ..+.+
T Consensus 399 -qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p--~~r~~i~~~~~~~~~~~~~~~~i~~~~--~~g~q 473 (681)
T PRK10917 399 -QRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELP--PGRKPITTVVIPDSRRDEVYERIREEI--AKGRQ 473 (681)
T ss_pred -HHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCC--CCCCCcEEEEeCcccHHHHHHHHHHHH--HcCCc
Confidence 2233444455789999999987655444332222333222211 112234444443222221122222222 34579
Q ss_pred EEEEecchh--------hHHHHHHHHhhhc
Q 022383 275 AVIFCNTKR--------KIYYSVFYFWIRW 296 (298)
Q Consensus 275 ~lIf~~s~~--------~~~~l~~~L~~~~ 296 (298)
++|||+.++ .++.+++.|+..+
T Consensus 474 ~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~ 503 (681)
T PRK10917 474 AYVVCPLIEESEKLDLQSAEETYEELQEAF 503 (681)
T ss_pred EEEEEcccccccchhHHHHHHHHHHHHHHC
Confidence 999999654 4567777777653
No 60
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=4.6e-26 Score=200.70 Aligned_cols=230 Identities=13% Similarity=0.094 Sum_probs=155.2
Q ss_pred HHHHHHHHhhcCCc--EEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc----CCceE
Q 022383 59 IQQRAVMPIIKGRD--VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF----INIQA 132 (298)
Q Consensus 59 ~Q~~~~~~~~~~~~--~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~----~~~~~ 132 (298)
+|.++++.+.++.+ +++++|||+|||.+|++|++.. ..+++|++|+++|++|+.+.++++... .+..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v 74 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNL 74 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceE
Confidence 59999999998864 7889999999999999998852 336899999999999999999887633 24556
Q ss_pred EEEEcCCchH--HHH------------------HHhhcCCcEEEeChHHHHHHHhcc----C-c---cCCCccEEEechh
Q 022383 133 HACVGGKSVG--EDI------------------RKLEHGVHVVSGTPGRVCDMIKRK----T-L---RTRAIKLLVLDES 184 (298)
Q Consensus 133 ~~~~~~~~~~--~~~------------------~~~~~~~~ilV~Tp~~l~~~~~~~----~-~---~~~~l~~vViDE~ 184 (298)
..+.|.+..+ ... ......+.|+++||+.+..+++.. . . .+.++++|||||+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 6666653222 000 011235788999999998776541 1 1 2478999999999
Q ss_pred hHhhcccc-----HHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhc--CCCCEEEEecC-----C-------------
Q 022383 185 DEMLSRGF-----KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF--MTDPVKILVKR-----D------------- 239 (298)
Q Consensus 185 h~~~~~~~-----~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~--~~~~~~~~~~~-----~------------- 239 (298)
|.+..+.. ......+++......+++++|||+++.+...+... ++.+....... +
T Consensus 155 H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 155 HLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred cccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 99864431 12333444444445799999999999877777664 45554332222 0
Q ss_pred ccCcCCceEEEEEecCccchHHHHHHHH-------hhCCCCcEEEEecchhhHHHHHHHHhhhc
Q 022383 240 ELTLEGIKQFFVAVEREEWKFDTLCDLY-------DTLTITQAVIFCNTKRKIYYSVFYFWIRW 296 (298)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~~k~~~l~~ll-------~~~~~~k~lIf~~s~~~~~~l~~~L~~~~ 296 (298)
....+.+++.+.. .. ..+...+..++ +..+++++||||||++.|+.+++.|+..+
T Consensus 235 ~~~~~~i~~~~~~-~~-~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~ 296 (357)
T TIGR03158 235 RPVLPPVELELIP-AP-DFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG 296 (357)
T ss_pred ceeccceEEEEEe-CC-chhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC
Confidence 0011245555554 22 22433333222 22356799999999999999999998754
No 61
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.7e-26 Score=207.48 Aligned_cols=238 Identities=18% Similarity=0.199 Sum_probs=176.1
Q ss_pred HHHHH-CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 46 RGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 46 ~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
..|+. +||..+++-|.++|..+++|+|+++..|||+||++||.+|++-. ..-+|||+|..+|..++.+.++..
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHHHHc
Confidence 44555 69999999999999999999999999999999999999999775 226999999999999999988876
Q ss_pred hccCCceEEEEEcCCchHHHHHHh---h-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc--cHHHHHH
Q 022383 125 GDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYD 198 (298)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~--~~~~i~~ 198 (298)
|+.+..+++..+..+....+ . +..+++..+||++..---...+.-..+.++||||||++.+|| |++.+..
T Consensus 81 ----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 81 ----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred ----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHH
Confidence 68888888886666554332 2 447999999999876432223335688999999999999997 8888776
Q ss_pred HHHhCC--CCccEEEEEeeCchhHHHHHHhcCC--CCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhCCCCc
Q 022383 199 VYRYLP--PDLQVVLISATLPHEILEMTTKFMT--DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQ 274 (298)
Q Consensus 199 i~~~~~--~~~~~v~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k 274 (298)
+..... ++++++.+|||-++.+..-+...+. .+..+.. ...++++...+........++..+.. ......+.
T Consensus 157 lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~---sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~ 232 (590)
T COG0514 157 LGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRG---SFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKS 232 (590)
T ss_pred HHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe---cCCCchhhhhhhhcccHHHHHHHHHh-hccccCCC
Confidence 644432 3789999999999887776666544 3323322 23334444443333322223332222 12444567
Q ss_pred EEEEecchhhHHHHHHHHhhhcC
Q 022383 275 AVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 275 ~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
.||||.|++.++.++++|+..|+
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~g~ 255 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKNGI 255 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHCCC
Confidence 99999999999999999998875
No 62
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=3e-26 Score=212.89 Aligned_cols=240 Identities=14% Similarity=0.215 Sum_probs=179.8
Q ss_pred HCCCCCChHHHHHHHHHhh-cCCcEEEEcCCCCchHHHHHHHHHHhhcc-------CCCCeEEEEEcCcHHHHHHHHHHH
Q 022383 50 QYGFEKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDT-------SSREVQALILSPTRELATQTEKVI 121 (298)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~-~~~~~li~~pTG~GKT~~~~~~~~~~~~~-------~~~~~~~lil~p~~~l~~q~~~~~ 121 (298)
-++|..++..|++++|.+. +..|.+||||||+|||..|++.+++.+.. ...+.++|||+|+++||.++.+.+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 3578899999999999876 56799999999999999999999998864 234579999999999999999999
Q ss_pred HHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccC---ccCCCccEEEechhhHhhccccHHHHHH
Q 022383 122 LAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT---LRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (298)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~---~~~~~l~~vViDE~h~~~~~~~~~~i~~ 198 (298)
.+-....|+.+..++|++...... ...++|+|+|||+..-.-+... ..++.+.+|||||+|.+.++ .++.++.
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEt 260 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLET 260 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHH
Confidence 887777799999999998765432 2348999999999887666532 23588999999999998655 4555555
Q ss_pred HHHhC-------CCCccEEEEEeeCchhHHHHHHhcCCC-CEEEEecCCccCcCCceEEEEEecCc---c-------chH
Q 022383 199 VYRYL-------PPDLQVVLISATLPHEILEMTTKFMTD-PVKILVKRDELTLEGIKQFFVAVERE---E-------WKF 260 (298)
Q Consensus 199 i~~~~-------~~~~~~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~---~-------~k~ 260 (298)
++.+. ....++|++|||+|+- ++...++.-+ +..+........+..+.+.++-++.. . -.+
T Consensus 261 iVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 261 IVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 54433 3578999999999985 4444433333 33444444455666677777766654 1 112
Q ss_pred HHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhc
Q 022383 261 DTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRW 296 (298)
Q Consensus 261 ~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~ 296 (298)
+.+.+++. .+.+++|||.++.++...|+.|.+.+
T Consensus 340 ~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a 373 (1230)
T KOG0952|consen 340 DKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERA 373 (1230)
T ss_pred HHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHH
Confidence 33333333 34699999999999999999998764
No 63
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.94 E-value=5.8e-25 Score=206.96 Aligned_cols=234 Identities=18% Similarity=0.172 Sum_probs=159.9
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHhhcC------CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHH
Q 022383 43 DLLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (298)
Q Consensus 43 ~i~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 116 (298)
.+...+...+| .|++.|+++++.+.++ .+.+++||||||||.+|+++++..+.. +.+++|++||++|+.|
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q 299 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQ 299 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHH
Confidence 44556677888 5999999999999865 268999999999999999999988764 5689999999999999
Q ss_pred HHHHHHHhhccCCceEEEEEcCCchHHHH---HHhh-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcccc
Q 022383 117 TEKVILAIGDFINIQAHACVGGKSVGEDI---RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (298)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~ 192 (298)
+++.++++....++++..++|+....+.. ..+. +.++|+|+||+.+.. .+.++++++|||||+|++....
T Consensus 300 ~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~q- 373 (630)
T TIGR00643 300 HYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVEQ- 373 (630)
T ss_pred HHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHHH-
Confidence 99999999888899999999998765533 2332 458999999987653 4567899999999999863221
Q ss_pred HHHHHHHHHhCC--CCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHh-h
Q 022383 193 KDQIYDVYRYLP--PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-T 269 (298)
Q Consensus 193 ~~~i~~i~~~~~--~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~-~ 269 (298)
. ..+..... ..+++++||||+.+....+......+...+...+ .....+...+... .. + ..+...+. .
T Consensus 374 r---~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p--~~r~~i~~~~~~~--~~-~-~~~~~~i~~~ 444 (630)
T TIGR00643 374 R---KKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELP--PGRKPITTVLIKH--DE-K-DIVYEFIEEE 444 (630)
T ss_pred H---HHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCC--CCCCceEEEEeCc--ch-H-HHHHHHHHHH
Confidence 1 12223322 2688999999986654433221111111111111 1112233333322 22 2 23333333 2
Q ss_pred -CCCCcEEEEecch--------hhHHHHHHHHhhh
Q 022383 270 -LTITQAVIFCNTK--------RKIYYSVFYFWIR 295 (298)
Q Consensus 270 -~~~~k~lIf~~s~--------~~~~~l~~~L~~~ 295 (298)
..+.+++|||+.. ..++.+++.|.+.
T Consensus 445 l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~ 479 (630)
T TIGR00643 445 IAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKA 479 (630)
T ss_pred HHhCCcEEEEEccccccccchHHHHHHHHHHHHhh
Confidence 3457999999876 4566777777654
No 64
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.94 E-value=5.7e-25 Score=205.11 Aligned_cols=226 Identities=19% Similarity=0.143 Sum_probs=159.8
Q ss_pred hHHHHHHHHHhhcCCcEEEEcCCCCchHHH---------HHHHHHHhhc---cCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSM---------IALTVCQTVD---TSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~---------~~~~~~~~~~---~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
...|.++++.+.+|++++++|+||+|||.+ |++|.+..+. ....+.++++++|+++|+.|+...+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 347889999999999999999999999987 4455555442 1334568999999999999999988765
Q ss_pred hcc---CCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHH
Q 022383 125 GDF---INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 201 (298)
Q Consensus 125 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~ 201 (298)
... .+.++...+|+... ..........+++|+|+.. ....++++++||+||+|.+...+ +.+..+++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~--DllL~llk 315 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG--DIIIAVAR 315 (675)
T ss_pred hCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccch--hHHHHHHH
Confidence 433 35677888998763 2222222367999999742 12357889999999999985553 55555665
Q ss_pred hCC-CCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCc---------cchHHHHHHHHhh--
Q 022383 202 YLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE---------EWKFDTLCDLYDT-- 269 (298)
Q Consensus 202 ~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~k~~~l~~ll~~-- 269 (298)
... ...|+++||||++.++..+ ..++.+|..+.+. ......+++.+...... ..+...+..+...
T Consensus 316 ~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~--grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~ 392 (675)
T PHA02653 316 KHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIP--GGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTP 392 (675)
T ss_pred HhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeC--CCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhc
Confidence 443 3458999999999887766 5678888877764 23345677777644311 1122223333222
Q ss_pred CCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 270 LTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 270 ~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
..++++||||+++.+++.+++.|++.
T Consensus 393 ~~~g~iLVFlpg~~ei~~l~~~L~~~ 418 (675)
T PHA02653 393 PKGSSGIVFVASVSQCEEYKKYLEKR 418 (675)
T ss_pred ccCCcEEEEECcHHHHHHHHHHHHhh
Confidence 23468999999999999999999876
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.94 E-value=2.1e-25 Score=197.84 Aligned_cols=220 Identities=17% Similarity=0.093 Sum_probs=143.5
Q ss_pred cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchH---------
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVG--------- 142 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 142 (298)
++++++|||+|||++|+.+++..+.. ..+.+++|++|+++|+.|+.++++.+... .+...+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~-~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKS-QKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhh-CCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCch
Confidence 58999999999999999999988654 34568999999999999999999887421 334444432210
Q ss_pred --HHH-HHh------hcCCcEEEeChHHHHHHHhccC----ccC--CCccEEEechhhHhhccccHHHHHHHHHhCC-CC
Q 022383 143 --EDI-RKL------EHGVHVVSGTPGRVCDMIKRKT----LRT--RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PD 206 (298)
Q Consensus 143 --~~~-~~~------~~~~~ilV~Tp~~l~~~~~~~~----~~~--~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~-~~ 206 (298)
... ... ....+|+|+||+++...+..+. ..+ -..++|||||+|.+.+.++.. +..+++.+. .+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~ 155 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDND 155 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcC
Confidence 000 001 1235799999999988765421 111 233799999999997765433 555555443 47
Q ss_pred ccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEe-cCccchHHHHHHHHhh-CCCCcEEEEecchhh
Q 022383 207 LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAV-EREEWKFDTLCDLYDT-LTITQAVIFCNTKRK 284 (298)
Q Consensus 207 ~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~k~~~l~~ll~~-~~~~k~lIf~~s~~~ 284 (298)
.|++++|||+++.+..+.......+........... ....+.+..+ .....+...+..+++. ..++++||||||++.
T Consensus 156 ~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 156 VPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred CCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHH
Confidence 899999999998877776654332211111111100 0112222222 2222356666666654 345799999999999
Q ss_pred HHHHHHHHhhhcC
Q 022383 285 IYYSVFYFWIRWI 297 (298)
Q Consensus 285 ~~~l~~~L~~~~~ 297 (298)
|+.+++.|++.++
T Consensus 235 ~~~~~~~L~~~~~ 247 (358)
T TIGR01587 235 AQEFYQQLKENAP 247 (358)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999988765
No 66
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.93 E-value=2.6e-25 Score=189.62 Aligned_cols=196 Identities=27% Similarity=0.371 Sum_probs=151.8
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhc---cCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccE
Q 022383 102 VQALILSPTRELATQTEKVILAIGD---FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKL 178 (298)
Q Consensus 102 ~~~lil~p~~~l~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~ 178 (298)
+.++|+-|+++|++|+.+.++++.. ...++..++.||.....+.+.+.++.+|+|+||+++..++..+.+.+.++.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 5699999999999999997766543 3356667888888888899999999999999999999999999999999999
Q ss_pred EEechhhHhhccccHHHHHHHHHhCC------CCccEEEEEeeCch-hHHHHHHhcCCCCEEEEecCCccCcCCceEEEE
Q 022383 179 LVLDESDEMLSRGFKDQIYDVYRYLP------PDLQVVLISATLPH-EILEMTTKFMTDPVKILVKRDELTLEGIKQFFV 251 (298)
Q Consensus 179 vViDE~h~~~~~~~~~~i~~i~~~~~------~~~~~v~~SAT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 251 (298)
+|+||+|.++..+|.+.|.++...+| ...|.+++|||+.. ++.....+.+.-|.++....++..+..+.+.+.
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhvv~ 446 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHVVK 446 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcccee
Confidence 99999999999999999999988887 36899999999853 334444455666777776655555555555544
Q ss_pred EecCcc-----------------------------chHHHHHHH---------HhhCCCCcEEEEecchhhHHHHHHHHh
Q 022383 252 AVEREE-----------------------------WKFDTLCDL---------YDTLTITQAVIFCNTKRKIYYSVFYFW 293 (298)
Q Consensus 252 ~~~~~~-----------------------------~k~~~l~~l---------l~~~~~~k~lIf~~s~~~~~~l~~~L~ 293 (298)
.+.+.. ........+ ++.+...+.||||.|+.+|..+-.+++
T Consensus 447 lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~ 526 (725)
T KOG0349|consen 447 LVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMN 526 (725)
T ss_pred ecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHH
Confidence 443321 111122222 334456799999999999999999999
Q ss_pred hhcC
Q 022383 294 IRWI 297 (298)
Q Consensus 294 ~~~~ 297 (298)
++|-
T Consensus 527 qkgg 530 (725)
T KOG0349|consen 527 QKGG 530 (725)
T ss_pred HcCC
Confidence 8873
No 67
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.92 E-value=4.6e-24 Score=196.10 Aligned_cols=151 Identities=17% Similarity=0.133 Sum_probs=114.9
Q ss_pred CCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceE
Q 022383 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (298)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 132 (298)
...|+++|.++++.++.+++.++++|||+|||+++...+...+.. ...++|||+|+++|+.|+.+.++++.......+
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~ 189 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAM 189 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhccccccce
Confidence 357999999999999999999999999999998765432222222 234899999999999999999998865444445
Q ss_pred EEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEE
Q 022383 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~ 212 (298)
..+.+|.... .+.+|+|+|++++.+... ..+.++++||+||||++... .+..++..+++..+++++
T Consensus 190 ~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~~~lGL 255 (501)
T PHA02558 190 HKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCKFKFGL 255 (501)
T ss_pred eEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccceEEEE
Confidence 4555554322 346999999999875432 24678999999999998654 345666777667889999
Q ss_pred EeeCchh
Q 022383 213 SATLPHE 219 (298)
Q Consensus 213 SAT~~~~ 219 (298)
|||+...
T Consensus 256 TATp~~~ 262 (501)
T PHA02558 256 TGSLRDG 262 (501)
T ss_pred eccCCCc
Confidence 9999654
No 68
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.92 E-value=3.1e-23 Score=198.11 Aligned_cols=218 Identities=18% Similarity=0.253 Sum_probs=158.2
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHH-HhhccCCceEEEEEc
Q 022383 59 IQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQAHACVG 137 (298)
Q Consensus 59 ~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~~~~~~~~~~ 137 (298)
+-.+++..+.++++++++||||||||.+|.+++++.... ..+++++.|++++|.|+++++. .++...+..+++..+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr 85 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMR 85 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEec
Confidence 334667777789999999999999999999999986432 2489999999999999999885 455555667777666
Q ss_pred CCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHh-hcccc-HHHHHHHHHhCCCCccEEEEEee
Q 022383 138 GKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM-LSRGF-KDQIYDVYRYLPPDLQVVLISAT 215 (298)
Q Consensus 138 ~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~-~~~~~-~~~i~~i~~~~~~~~~~v~~SAT 215 (298)
+... .....+|+|+||++|.+++.. ...++++++|||||+|.. .+.++ ...+..+.+.++++.|+++||||
T Consensus 86 ~~~~------~~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSAT 158 (812)
T PRK11664 86 AESK------VGPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSAT 158 (812)
T ss_pred Cccc------cCCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecC
Confidence 5432 123458999999999998876 357899999999999972 33222 23345566777888999999999
Q ss_pred CchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHH-----HHHHHHhhCCCCcEEEEecchhhHHHHHH
Q 022383 216 LPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFD-----TLCDLYDTLTITQAVIFCNTKRKIYYSVF 290 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~-----~l~~ll~~~~~~k~lIf~~s~~~~~~l~~ 290 (298)
++... +..++.++..+..... ...+.+.|...+... +.. .+..++.. ..+++||||++..+++.+++
T Consensus 159 l~~~~---l~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~-~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~ 230 (812)
T PRK11664 159 LDNDR---LQQLLPDAPVIVSEGR---SFPVERRYQPLPAHQ-RFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQE 230 (812)
T ss_pred CCHHH---HHHhcCCCCEEEecCc---cccceEEeccCchhh-hHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHH
Confidence 98652 2456655544443321 234677777665444 332 23334433 35799999999999999999
Q ss_pred HHhh
Q 022383 291 YFWI 294 (298)
Q Consensus 291 ~L~~ 294 (298)
.|++
T Consensus 231 ~L~~ 234 (812)
T PRK11664 231 QLAS 234 (812)
T ss_pred HHHH
Confidence 9986
No 69
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.92 E-value=7.2e-23 Score=195.28 Aligned_cols=220 Identities=17% Similarity=0.205 Sum_probs=159.0
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHH-HhhccCCceEEEEEc
Q 022383 59 IQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQAHACVG 137 (298)
Q Consensus 59 ~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~~~~~~~~~~ 137 (298)
+-.+++..+.++++++++|+||||||.+|..++++.... +.+++++.|++++|.|+++++. .++...+..+++..+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~---~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr 82 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI---GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVR 82 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc---CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEc
Confidence 345667777789999999999999999999999987632 4589999999999999999885 444445556665554
Q ss_pred CCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhH-hhccccHH-HHHHHHHhCCCCccEEEEEee
Q 022383 138 GKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE-MLSRGFKD-QIYDVYRYLPPDLQVVLISAT 215 (298)
Q Consensus 138 ~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~-~~~~~~~~-~i~~i~~~~~~~~~~v~~SAT 215 (298)
+.. ....+.+|+|+||+.|.+++.. ...++++++|||||+|. .++.++.. .+..+.+.++++.|+++||||
T Consensus 83 ~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSAT 155 (819)
T TIGR01970 83 GEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSAT 155 (819)
T ss_pred ccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCC
Confidence 432 2234578999999999998876 35789999999999995 55555433 344566667788999999999
Q ss_pred CchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchH----HHHHHHHhhCCCCcEEEEecchhhHHHHHHH
Q 022383 216 LPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF----DTLCDLYDTLTITQAVIFCNTKRKIYYSVFY 291 (298)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~----~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~ 291 (298)
++... +..++.++..+..... ...++++|......+... ..+..+++. ..+++||||++..+++.+++.
T Consensus 156 l~~~~---l~~~l~~~~vI~~~gr---~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~ 228 (819)
T TIGR01970 156 LDGER---LSSLLPDAPVVESEGR---SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQ 228 (819)
T ss_pred CCHHH---HHHHcCCCcEEEecCc---ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHH
Confidence 98653 3456655544443321 234667776665443221 233334433 357899999999999999999
Q ss_pred Hhhh
Q 022383 292 FWIR 295 (298)
Q Consensus 292 L~~~ 295 (298)
|++.
T Consensus 229 L~~~ 232 (819)
T TIGR01970 229 LAER 232 (819)
T ss_pred HHhh
Confidence 9863
No 70
>PRK13766 Hef nuclease; Provisional
Probab=99.91 E-value=1.3e-22 Score=196.45 Aligned_cols=163 Identities=18% Similarity=0.200 Sum_probs=129.8
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
.+...+++||.+++..++.+ |+++++|||+|||.++++++...+.. .+.++|||+|+++|+.|+.+.++++....+.
T Consensus 11 ~~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~--~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 87 (773)
T PRK13766 11 PNTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK--KGGKVLILAPTKPLVEQHAEFFRKFLNIPEE 87 (773)
T ss_pred cCcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh--CCCeEEEEeCcHHHHHHHHHHHHHHhCCCCc
Confidence 34457999999999888877 99999999999999999888887742 3458999999999999999999987654445
Q ss_pred eEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEE
Q 022383 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v 210 (298)
.+..++|+....... .+..+++|+|+||+.+...+..+.+.+.++++|||||||++........+........+..+++
T Consensus 88 ~v~~~~g~~~~~~r~-~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il 166 (773)
T PRK13766 88 KIVVFTGEVSPEKRA-ELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVL 166 (773)
T ss_pred eEEEEeCCCCHHHHH-HHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEE
Confidence 777788877765433 3344679999999999888877778889999999999999865543444444444445567899
Q ss_pred EEEeeCc
Q 022383 211 LISATLP 217 (298)
Q Consensus 211 ~~SAT~~ 217 (298)
++|||+.
T Consensus 167 ~lTaTP~ 173 (773)
T PRK13766 167 GLTASPG 173 (773)
T ss_pred EEEcCCC
Confidence 9999984
No 71
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.91 E-value=4.8e-22 Score=173.30 Aligned_cols=164 Identities=16% Similarity=0.192 Sum_probs=135.5
Q ss_pred CCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCce
Q 022383 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (298)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 131 (298)
+..+++.||.......+.+ |.+++.|||-|||+.+++-+...+...+. ++|+++||+.|+.|..+.|++......-.
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 3456889999888777765 99999999999999999989888877644 89999999999999999999988776668
Q ss_pred EEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc-cHHHHHHHHHhCCCCccEE
Q 022383 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPDLQVV 210 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~-~~~~i~~i~~~~~~~~~~v 210 (298)
++.+.|.....+....+.. .+|+|+||+.+.+-+..+.+++.++.++||||||+-.... |.......++. .+++.++
T Consensus 89 i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~-~k~~~il 166 (542)
T COG1111 89 IAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRS-AKNPLIL 166 (542)
T ss_pred eeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHh-ccCceEE
Confidence 8899999888777666655 4999999999999999999999999999999999975443 33333334433 3578899
Q ss_pred EEEeeCchhH
Q 022383 211 LISATLPHEI 220 (298)
Q Consensus 211 ~~SAT~~~~~ 220 (298)
++|||+..+.
T Consensus 167 gLTASPGs~~ 176 (542)
T COG1111 167 GLTASPGSDL 176 (542)
T ss_pred EEecCCCCCH
Confidence 9999996643
No 72
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.90 E-value=5.7e-22 Score=160.62 Aligned_cols=187 Identities=35% Similarity=0.595 Sum_probs=151.3
Q ss_pred HCCCCCChHHHHHHHHHhhcC-CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 022383 50 QYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (298)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~-~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~ 128 (298)
..++..++++|.++++.+..+ +++++.+|||+|||.+++.+++..+.... ..+++|++|+..++.|+...+.+.....
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 356788999999999999988 99999999999999999999988876542 3479999999999999999998877554
Q ss_pred CceEEEEEcCCchHHHHHHhhcCC-cEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCc
Q 022383 129 NIQAHACVGGKSVGEDIRKLEHGV-HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207 (298)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~-~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~ 207 (298)
........++.........+..+. +++++|++.+............+++++|+||+|.+....+...+..+++.+++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~ 161 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNV 161 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccc
Confidence 423334444444344444455555 9999999999999988777788999999999999976577888888998888889
Q ss_pred cEEEEEeeCchhHHHHHHhcCCCCEEEEec
Q 022383 208 QVVLISATLPHEILEMTTKFMTDPVKILVK 237 (298)
Q Consensus 208 ~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 237 (298)
+++++|||+++........+......+...
T Consensus 162 ~~v~~saT~~~~~~~~~~~~~~~~~~~~~~ 191 (201)
T smart00487 162 QLLLLSATPPEEIENLLELFLNDPVFIDVG 191 (201)
T ss_pred eEEEEecCCchhHHHHHHHhcCCCEEEeCC
Confidence 999999999988888777777655555443
No 73
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.90 E-value=1.3e-22 Score=170.75 Aligned_cols=253 Identities=16% Similarity=0.216 Sum_probs=182.1
Q ss_pred cCcccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 33 TSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 33 ~~~~~l~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
..-++++++....+.|++ +..+.++|.|..+++....|++++++.|||.||++||.+|++.. ...++++||..
T Consensus 71 wdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a------dg~alvi~pli 144 (695)
T KOG0353|consen 71 WDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA------DGFALVICPLI 144 (695)
T ss_pred cccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc------CCceEeechhH
Confidence 445678899999999987 46788999999999999999999999999999999999998764 44799999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh-------hcCCcEEEeChHHHHH---HHhc--cCccCCCccEE
Q 022383 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-------EHGVHVVSGTPGRVCD---MIKR--KTLRTRAIKLL 179 (298)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ilV~Tp~~l~~---~~~~--~~~~~~~l~~v 179 (298)
.|++++.-+++.+ |+....+....+. +..+.+ .....++..||+++.. +++. ..+....+.++
T Consensus 145 slmedqil~lkql----gi~as~lnanssk-e~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~i 219 (695)
T KOG0353|consen 145 SLMEDQILQLKQL----GIDASMLNANSSK-EEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHHHh----CcchhhccCcccH-HHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEE
Confidence 9999988888887 4444444443332 222222 1345789999999875 2222 45667889999
Q ss_pred EechhhHhhccc--cHHHHHH--HHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecC
Q 022383 180 VLDESDEMLSRG--FKDQIYD--VYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER 255 (298)
Q Consensus 180 ViDE~h~~~~~~--~~~~i~~--i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 255 (298)
-+||+|+-.+|| |+.++.. ++++.-++.++++++||-++.+.+-....+.-...+.+ +....+++....+.--+.
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl~yev~qkp~ 298 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNLKYEVRQKPG 298 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhee-ecccCCCCceeEeeeCCC
Confidence 999999999996 6665543 45555578999999999988776655544321111111 122333333333332222
Q ss_pred -ccchHHHHHHHHh-hCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 256 -EEWKFDTLCDLYD-TLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 256 -~~~k~~~l~~ll~-~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
+++-.+.+..+++ ...+...||||-+.++|++++..|+..|+
T Consensus 299 n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi 342 (695)
T KOG0353|consen 299 NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGI 342 (695)
T ss_pred ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCc
Confidence 2234555666665 45667899999999999999999999886
No 74
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=5.4e-22 Score=182.90 Aligned_cols=236 Identities=16% Similarity=0.184 Sum_probs=175.4
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
.|.. |++.|..+++.++.|+ +..+.||+|||++|++|++..... ++.++|++||++||.|.++.+..+...+++
T Consensus 100 lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---G~~v~VvTptreLA~qdae~~~~l~~~lGl 173 (656)
T PRK12898 100 LGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---GLPVHVITVNDYLAERDAELMRPLYEALGL 173 (656)
T ss_pred hCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---CCeEEEEcCcHHHHHHHHHHHHHHHhhcCC
Confidence 4544 9999999999999999 999999999999999999987554 568999999999999999999999999999
Q ss_pred eEEEEEcCCchHHHHHHhhcCCcEEEeChHHH-HHHHhccC-------------------------ccCCCccEEEechh
Q 022383 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT-------------------------LRTRAIKLLVLDES 184 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~~~~~~-------------------------~~~~~l~~vViDE~ 184 (298)
++..++|+.+.. .+....+++|+++|...| .++++.+. ...+.+.+.||||+
T Consensus 174 sv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEv 251 (656)
T PRK12898 174 TVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEA 251 (656)
T ss_pred EEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecc
Confidence 999999997643 344556789999999887 44444321 12366889999999
Q ss_pred hHhhcc-c-----------------cH--------------------------------HHHHHHHHhCCC---------
Q 022383 185 DEMLSR-G-----------------FK--------------------------------DQIYDVYRYLPP--------- 205 (298)
Q Consensus 185 h~~~~~-~-----------------~~--------------------------------~~i~~i~~~~~~--------- 205 (298)
|.++=+ . .. ..++.++..++.
T Consensus 252 DSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~ 331 (656)
T PRK12898 252 DSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRRE 331 (656)
T ss_pred cceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHH
Confidence 986511 0 00 001111100000
Q ss_pred ----------------------------------------------------------------------------CccE
Q 022383 206 ----------------------------------------------------------------------------DLQV 209 (298)
Q Consensus 206 ----------------------------------------------------------------------------~~~~ 209 (298)
-.++
T Consensus 332 ~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl 411 (656)
T PRK12898 332 ELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRL 411 (656)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHH
Confidence 1258
Q ss_pred EEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhC--CCCcEEEEecchhhHHH
Q 022383 210 VLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKIYY 287 (298)
Q Consensus 210 v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~--~~~k~lIf~~s~~~~~~ 287 (298)
.+||||.+.....+...|..++..+...... .....+.++.++..+ |...+...++.. .+.++||||+|++.++.
T Consensus 412 ~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~-K~~aL~~~i~~~~~~~~pvLIft~t~~~se~ 488 (656)
T PRK12898 412 AGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAA-KWAAVAARVRELHAQGRPVLVGTRSVAASER 488 (656)
T ss_pred hcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHH-HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHH
Confidence 8999999988777888887777666554332 222344455555444 888888888753 35689999999999999
Q ss_pred HHHHHhhhcC
Q 022383 288 SVFYFWIRWI 297 (298)
Q Consensus 288 l~~~L~~~~~ 297 (298)
+++.|...|+
T Consensus 489 L~~~L~~~gi 498 (656)
T PRK12898 489 LSALLREAGL 498 (656)
T ss_pred HHHHHHHCCC
Confidence 9999998876
No 75
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.89 E-value=3.9e-22 Score=189.47 Aligned_cols=179 Identities=22% Similarity=0.292 Sum_probs=146.0
Q ss_pred HHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 022383 47 GIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (298)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (298)
.-...+|+ |.++|++++..+..|.+++++||||+|||++...++...+.. +.+++|.+|.++|.+|.++.+.....
T Consensus 112 ~~~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~---~qrviYTsPIKALsNQKyrdl~~~fg 187 (1041)
T COG4581 112 PAREYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD---GQRVIYTSPIKALSNQKYRDLLAKFG 187 (1041)
T ss_pred HHHhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc---CCceEeccchhhhhhhHHHHHHHHhh
Confidence 33556777 999999999999999999999999999999988888777766 34599999999999999998876543
Q ss_pred cCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCC
Q 022383 127 FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206 (298)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~ 206 (298)
...-.+++.+|+.+ ++.+..++|.|.|.|.+|+..+...+..+..|||||+|.|.+...+..++.++-.+|..
T Consensus 188 dv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~ 260 (1041)
T COG4581 188 DVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDH 260 (1041)
T ss_pred hhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCC
Confidence 22123456666654 34567999999999999999999999999999999999999988999999999999999
Q ss_pred ccEEEEEeeCchh--HHHHHHhcCCCCEEEEe
Q 022383 207 LQVVLISATLPHE--ILEMTTKFMTDPVKILV 236 (298)
Q Consensus 207 ~~~v~~SAT~~~~--~~~~~~~~~~~~~~~~~ 236 (298)
.++|++|||+++. ...|+...-..|..+..
T Consensus 261 v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~ 292 (1041)
T COG4581 261 VRFVFLSATVPNAEEFAEWIQRVHSQPIHVVS 292 (1041)
T ss_pred CcEEEEeCCCCCHHHHHHHHHhccCCCeEEEe
Confidence 9999999999875 33344443445555544
No 76
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.88 E-value=1.5e-21 Score=186.32 Aligned_cols=237 Identities=15% Similarity=0.146 Sum_probs=171.4
Q ss_pred HHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 022383 47 GIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (298)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (298)
....+|...+++-|.+++..++.|+|+++.+|||.||++||.+|++-. ++.+|+|.|..+|+.++...+.+
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L~~--- 326 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHLSK--- 326 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhhhh---
Confidence 445579999999999999999999999999999999999999888653 44899999999999988876633
Q ss_pred cCCceEEEEEcCCchHHHHH---Hhhc---CCcEEEeChHHHHHHH--hccCccCCC---ccEEEechhhHhhccc--cH
Q 022383 127 FINIQAHACVGGKSVGEDIR---KLEH---GVHVVSGTPGRVCDMI--KRKTLRTRA---IKLLVLDESDEMLSRG--FK 193 (298)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~---~~~~---~~~ilV~Tp~~l~~~~--~~~~~~~~~---l~~vViDE~h~~~~~~--~~ 193 (298)
.++....+.++....++.. .+.. .++|+..|||++...- ......+.. +.++||||||+...|+ |+
T Consensus 327 -~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFR 405 (941)
T KOG0351|consen 327 -KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFR 405 (941)
T ss_pred -cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhccccc
Confidence 3688888888877654432 3332 5789999999997632 223334444 8999999999999996 77
Q ss_pred HHHHHHHHh--CCCCccEEEEEeeCchhHHHHHHhcCC--CCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHH-h
Q 022383 194 DQIYDVYRY--LPPDLQVVLISATLPHEILEMTTKFMT--DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY-D 268 (298)
Q Consensus 194 ~~i~~i~~~--~~~~~~~v~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll-~ 268 (298)
+.+..+... ..+..+++++|||.+..+..-+-..++ ++..+. ....+.++...+..-.... ....+...+ .
T Consensus 406 p~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV~~k~~~~-~~~~~~~~~~~ 481 (941)
T KOG0351|consen 406 PSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEVSPKTDKD-ALLDILEESKL 481 (941)
T ss_pred HHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEEEeccCcc-chHHHHHHhhh
Confidence 777765333 234589999999998877665555443 444222 2233334444333322222 333333344 4
Q ss_pred hCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 269 TLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 269 ~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
.++....||||.++.+|+.++..|+..|.
T Consensus 482 ~~~~~s~IIYC~sr~~ce~vs~~L~~~~~ 510 (941)
T KOG0351|consen 482 RHPDQSGIIYCLSRKECEQVSAVLRSLGK 510 (941)
T ss_pred cCCCCCeEEEeCCcchHHHHHHHHHHhch
Confidence 55667999999999999999999998763
No 77
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.88 E-value=1e-21 Score=185.37 Aligned_cols=251 Identities=15% Similarity=0.211 Sum_probs=184.6
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHhhcC-CcEEEEcCCCCchHHHHHHHHHHhhccCCC--------CeEEEEEcC
Q 022383 39 GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSR--------EVQALILSP 109 (298)
Q Consensus 39 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~li~~pTG~GKT~~~~~~~~~~~~~~~~--------~~~~lil~p 109 (298)
.++.|-..++. |..++++.|+.+.+..+.+ .++++|||||+|||-.+++.+++.+....+ ..+++|++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 45556666553 5567999999999998866 689999999999999999999998855322 348999999
Q ss_pred cHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccC--ccCCCccEEEechhhHh
Q 022383 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEM 187 (298)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~--~~~~~l~~vViDE~h~~ 187 (298)
.++|++.+...|.+....+|+++...+|+.....+ + ..+..++|||||+..-.-++.. -..+-++++||||+|++
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~--q-ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKE--Q-IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhh--h-hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 99999999999999888999999999998664432 1 1346999999999876666532 12346788999999998
Q ss_pred hccccHHHHHHHHHhC-------CCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccch-
Q 022383 188 LSRGFKDQIYDVYRYL-------PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK- 259 (298)
Q Consensus 188 ~~~~~~~~i~~i~~~~-------~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k- 259 (298)
.+. .++.++.+..+. ...++.+++|||+|+- ++......-++..++....+..+..+.|.++.+.....-
T Consensus 450 hDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~ 527 (1674)
T KOG0951|consen 450 HDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLK 527 (1674)
T ss_pred ccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCch-hhhHHHhccCcccccccCcccCcCCccceEeccccCCchH
Confidence 655 355555443332 2468899999999986 222222233444455555567777788888887765411
Q ss_pred H------HHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhc
Q 022383 260 F------DTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRW 296 (298)
Q Consensus 260 ~------~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~ 296 (298)
. ......++.....++|||+.+++++-+.|.++|++.
T Consensus 528 ~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~ 570 (1674)
T KOG0951|consen 528 RFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKA 570 (1674)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHH
Confidence 1 123334555555799999999999999999999754
No 78
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.88 E-value=5.6e-21 Score=178.27 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=100.0
Q ss_pred ChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE
Q 022383 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (298)
++|+|.+++..+.-++..+++++||+|||++|++|++..... +..++|++|+++||.|..+.+..+...+|+.+...
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~---g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~ 145 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT---GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLG 145 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc---CCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 455555566555545557999999999999999998766544 44699999999999999999999999999999887
Q ss_pred EcCCc---hHHHHHHhhcCCcEEEeChHHH-HHHHhc------cCccCCCccEEEechhhHhh
Q 022383 136 VGGKS---VGEDIRKLEHGVHVVSGTPGRV-CDMIKR------KTLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 136 ~~~~~---~~~~~~~~~~~~~ilV~Tp~~l-~~~~~~------~~~~~~~l~~vViDE~h~~~ 188 (298)
.++.. ..........+++|+++||++| ..+++. ....++.+.++|+||||.++
T Consensus 146 ~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 146 VVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred ECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 76522 2223334446799999999999 455533 23456889999999999985
No 79
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.87 E-value=1e-21 Score=167.52 Aligned_cols=242 Identities=17% Similarity=0.198 Sum_probs=164.0
Q ss_pred HHHHHHHHH-CCCC-CChHHHHHHHHHhhcC-CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHH
Q 022383 42 DDLLRGIYQ-YGFE-KPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (298)
Q Consensus 42 ~~i~~~l~~-~~~~-~~~~~Q~~~~~~~~~~-~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (298)
..+..+|++ +|+. .-++.|..++..+.++ +||.|++|||+||++||.+|.+.. +..+|+++|..+|..++.
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQi 78 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQI 78 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHH
Confidence 356677777 4554 3578999999998765 799999999999999999998875 337999999999999988
Q ss_pred HHHHHhhccCCceEEEEEcCCchHHHHHHh------hcCCcEEEeChHHHHHHH----hccCccCCCccEEEechhhHhh
Q 022383 119 KVILAIGDFINIQAHACVGGKSVGEDIRKL------EHGVHVVSGTPGRVCDMI----KRKTLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ilV~Tp~~l~~~~----~~~~~~~~~l~~vViDE~h~~~ 188 (298)
+-+.++ .+++..+.+..+..+....+ .....++..|||....-. .+...+-+.+.++|+||+|+..
T Consensus 79 DHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVS 154 (641)
T KOG0352|consen 79 DHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVS 154 (641)
T ss_pred HHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHh
Confidence 877765 45665666655544432222 234578999999876422 2233445678999999999999
Q ss_pred ccc--cHHHHHHHHHhC--CCCccEEEEEeeCchhHHHHHHh--cCCCCEEEEecCCccCcCCceEEEEEecC---ccch
Q 022383 189 SRG--FKDQIYDVYRYL--PPDLQVVLISATLPHEILEMTTK--FMTDPVKILVKRDELTLEGIKQFFVAVER---EEWK 259 (298)
Q Consensus 189 ~~~--~~~~i~~i~~~~--~~~~~~v~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~k 259 (298)
+|| |++++..+-... -+....+.+|||-++.+++-+-. .+.+|+-++-.+... .+.++.... -.+-
T Consensus 155 QWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR-----~NLFYD~~~K~~I~D~ 229 (641)
T KOG0352|consen 155 QWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR-----DNLFYDNHMKSFITDC 229 (641)
T ss_pred hhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchh-----hhhhHHHHHHHHhhhH
Confidence 996 777777664333 35788999999998887664433 345666554322111 111111100 0112
Q ss_pred HHHHHHHHhh----------CC---CCcEEEEecchhhHHHHHHHHhhhcCC
Q 022383 260 FDTLCDLYDT----------LT---ITQAVIFCNTKRKIYYSVFYFWIRWIG 298 (298)
Q Consensus 260 ~~~l~~ll~~----------~~---~~k~lIf~~s~~~~~~l~~~L~~~~~~ 298 (298)
+..+.++-.. .+ .+-.||||.|++.|+.+|-.|..+|++
T Consensus 230 ~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~ 281 (641)
T KOG0352|consen 230 LTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIP 281 (641)
T ss_pred hHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcc
Confidence 3333333211 11 236899999999999999999988874
No 80
>PRK09694 helicase Cas3; Provisional
Probab=99.87 E-value=2.2e-20 Score=178.57 Aligned_cols=242 Identities=14% Similarity=0.056 Sum_probs=147.8
Q ss_pred CCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC--Cc
Q 022383 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI--NI 130 (298)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~--~~ 130 (298)
...|+|+|..+......+..+++.+|||+|||.+++.++...... ....+++|..||++++++++++++++.... ..
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~-~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ-GLADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 346999999886554456779999999999999988776544433 334589999999999999999998644321 34
Q ss_pred eEEEEEcCCchHHHH--------------------HHhhc-------CCcEEEeChHHHHHHHhc-cCccCCCc----cE
Q 022383 131 QAHACVGGKSVGEDI--------------------RKLEH-------GVHVVSGTPGRVCDMIKR-KTLRTRAI----KL 178 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~--------------------~~~~~-------~~~ilV~Tp~~l~~~~~~-~~~~~~~l----~~ 178 (298)
.+.+.+|........ ..... -.+|+|||+.+++...-. +...++.+ ++
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~sv 442 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSV 442 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCe
Confidence 567777654321110 01111 158999999998854332 22222333 48
Q ss_pred EEechhhHhhccccHHHHHHHHHhCC-CCccEEEEEeeCchhHHHHHHh-cCCC---------CEEEEecCC---c----
Q 022383 179 LVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLISATLPHEILEMTTK-FMTD---------PVKILVKRD---E---- 240 (298)
Q Consensus 179 vViDE~h~~~~~~~~~~i~~i~~~~~-~~~~~v~~SAT~~~~~~~~~~~-~~~~---------~~~~~~~~~---~---- 240 (298)
|||||+|.+ +..+...+..+++.+. ...++|+||||+|......+.. +-.. |........ .
T Consensus 443 vIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~ 521 (878)
T PRK09694 443 LIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLS 521 (878)
T ss_pred EEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeecc
Confidence 999999997 3444555666666643 3577999999999887654433 2111 000000000 0
Q ss_pred cCc--CCceEEE--EEe--cCccchHHHHHHHHhh-CCCCcEEEEecchhhHHHHHHHHhhhc
Q 022383 241 LTL--EGIKQFF--VAV--EREEWKFDTLCDLYDT-LTITQAVIFCNTKRKIYYSVFYFWIRW 296 (298)
Q Consensus 241 ~~~--~~i~~~~--~~~--~~~~~k~~~l~~ll~~-~~~~k~lIf~~s~~~~~~l~~~L~~~~ 296 (298)
... ....+.+ ... .........+..+++. ..+++++|||||++.|+.+++.|++.+
T Consensus 522 ~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~ 584 (878)
T PRK09694 522 AHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELN 584 (878)
T ss_pred ccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhC
Confidence 000 0011111 111 1111123334444443 345799999999999999999998764
No 81
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=2.4e-21 Score=181.98 Aligned_cols=149 Identities=18% Similarity=0.298 Sum_probs=130.4
Q ss_pred ccCCCCHHHHHHHH-----HCCCCCC---hHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEE
Q 022383 36 DAMGIKDDLLRGIY-----QYGFEKP---SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (298)
Q Consensus 36 ~~l~l~~~i~~~l~-----~~~~~~~---~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil 107 (298)
+.+++...+...+. .+||..| +|+|.++++.+..+++++.+++||+|||++|++|++..+... ..++||
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g---~~v~IV 141 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG---KPVHLV 141 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc---CCeEEE
Confidence 45678888888776 6899988 999999999999999999999999999999999999877543 248899
Q ss_pred cCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHH-HHHHhccCccCC-------CccEE
Q 022383 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKTLRTR-------AIKLL 179 (298)
Q Consensus 108 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~~~~~~~~~~-------~l~~v 179 (298)
+|+++||.|+.+.+..+.+.+++++..+.||.+...+...+ +++|+|+||++| ..+++.+.+.++ .+.++
T Consensus 142 TpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~ 219 (970)
T PRK12899 142 TVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFA 219 (970)
T ss_pred eCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEE
Confidence 99999999999999999999999999999998887776554 589999999999 999988766654 55899
Q ss_pred EechhhHhhc
Q 022383 180 VLDESDEMLS 189 (298)
Q Consensus 180 ViDE~h~~~~ 189 (298)
|+||||.|+-
T Consensus 220 IIDEADsmLi 229 (970)
T PRK12899 220 IIDEVDSILI 229 (970)
T ss_pred EEechhhhhh
Confidence 9999999873
No 82
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.87 E-value=2.7e-21 Score=174.65 Aligned_cols=225 Identities=15% Similarity=0.210 Sum_probs=174.0
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEE
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (298)
.+.|+|+.++..+-++.++++.|.|.+|||.++..++...+.. .-++||-+|-++|.+|-++.+..-.+ .+++
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~----DVGL 201 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFK----DVGL 201 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhc----ccce
Confidence 4899999999999999999999999999999988888777755 34899999999999999998765433 3556
Q ss_pred EEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEe
Q 022383 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SA 214 (298)
.+|+.... .....+|.|.+.|.+|+.++..-.+.+.+|||||+|.|-+...+-.|+..+-.+|.+.+.+++||
T Consensus 202 MTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSA 274 (1041)
T KOG0948|consen 202 MTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSA 274 (1041)
T ss_pred eecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccceEEEEec
Confidence 67765543 33689999999999999999888999999999999999888788888888889999999999999
Q ss_pred eCchhH--HHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCcc-------------c---------------------
Q 022383 215 TLPHEI--LEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE-------------W--------------------- 258 (298)
Q Consensus 215 T~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-------------~--------------------- 258 (298)
|+|+.. .+|+...-..|.++.... ..+-..+|+..+...+. +
T Consensus 275 TiPNA~qFAeWI~~ihkQPcHVVYTd--yRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~ 352 (1041)
T KOG0948|consen 275 TIPNARQFAEWICHIHKQPCHVVYTD--YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKA 352 (1041)
T ss_pred cCCCHHHHHHHHHHHhcCCceEEeec--CCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccc
Confidence 999863 446666666777776543 33333455544422110 0
Q ss_pred -----------------hHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 259 -----------------KFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 259 -----------------k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
.+..+...+-.....++|||+-|+++|+.+|..+...
T Consensus 353 ~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kl 406 (1041)
T KOG0948|consen 353 NKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKL 406 (1041)
T ss_pred ccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccC
Confidence 1112333333445568999999999999999887654
No 83
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.87 E-value=2.8e-20 Score=172.70 Aligned_cols=130 Identities=20% Similarity=0.328 Sum_probs=109.2
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHH-HhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC-QTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~-~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (298)
.|.. |++.|......+..|+ +.+++||+|||+++.+|++ +.+. +..+.|++||.+||.|.++.+..+.+.+|
T Consensus 53 lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~----G~~V~VvTpt~~LA~qdae~~~~l~~~LG 125 (745)
T TIGR00963 53 LGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT----GKGVHVVTVNDYLAQRDAEWMGQVYRFLG 125 (745)
T ss_pred hCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh----CCCEEEEcCCHHHHHHHHHHHHHHhccCC
Confidence 4544 8999999888887776 9999999999999999995 4443 33699999999999999999999999999
Q ss_pred ceEEEEEcCCchHHHHHHhhcCCcEEEeChHHH-HHHHhcc------CccCCCccEEEechhhHhhc
Q 022383 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEMLS 189 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~~~~~------~~~~~~l~~vViDE~h~~~~ 189 (298)
+++..+.|+.+........ .++|+++||.+| ..+++.+ ...++.+.++|+||+|.++-
T Consensus 126 Lsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LI 190 (745)
T TIGR00963 126 LSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILI 190 (745)
T ss_pred CeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhH
Confidence 9999999988765443333 479999999999 8888765 35679999999999999864
No 84
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.86 E-value=1.6e-20 Score=173.52 Aligned_cols=155 Identities=19% Similarity=0.259 Sum_probs=132.1
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
..|+ +..+|++++-++.+|.+++|.|+|.+|||+++..++.....+ +.+++|-+|-++|.+|-++-|+.....
T Consensus 294 ~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h---~TR~iYTSPIKALSNQKfRDFk~tF~D--- 366 (1248)
T KOG0947|consen 294 YPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH---MTRTIYTSPIKALSNQKFRDFKETFGD--- 366 (1248)
T ss_pred CCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh---ccceEecchhhhhccchHHHHHHhccc---
Confidence 4555 999999999999999999999999999998866555443323 558999999999999999988876443
Q ss_pred eEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEE
Q 022383 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v 210 (298)
+++++|+.... ....++|.|.|.|-+|+.++.--.+++.+|||||+|.+.+...+-.++.++-++|+.+++|
T Consensus 367 -vgLlTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~I 438 (1248)
T KOG0947|consen 367 -VGLLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFI 438 (1248)
T ss_pred -cceeecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccceEE
Confidence 33777775543 3368999999999999999888889999999999999988888999999999999999999
Q ss_pred EEEeeCchhH
Q 022383 211 LISATLPHEI 220 (298)
Q Consensus 211 ~~SAT~~~~~ 220 (298)
++|||+|+..
T Consensus 439 lLSATVPN~~ 448 (1248)
T KOG0947|consen 439 LLSATVPNTL 448 (1248)
T ss_pred EEeccCCChH
Confidence 9999998863
No 85
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=6.4e-20 Score=172.65 Aligned_cols=131 Identities=16% Similarity=0.268 Sum_probs=108.2
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
.|. .|++.|..+.+.+.+|+ +.++.||+|||+++++|++..... +..+.|++||++||.|.++.+..+...+|+
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl 148 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---GKGVHLITVNDYLAKRDAEEMGQVYEFLGL 148 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---CCCeEEEeCCHHHHHHHHHHHHHHHhhcCC
Confidence 465 59999999999888887 999999999999999999865444 568999999999999999999999999999
Q ss_pred eEEEEEcCCchHHHHHHhhcCCcEEEeChHHH-HHHHhccC------ccCCCccEEEechhhHhh
Q 022383 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT------LRTRAIKLLVLDESDEML 188 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~~~~~~------~~~~~l~~vViDE~h~~~ 188 (298)
++....|+.+...+.+ ...+++|+++||+++ .++++.+. ..++.+.++|+||+|.++
T Consensus 149 ~v~~i~g~~~~~~~r~-~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 149 TVGLNFSDIDDASEKK-AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred eEEEEeCCCCcHHHHH-HhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 9999999987323322 234589999999999 45554422 356889999999999975
No 86
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.85 E-value=9.8e-21 Score=173.79 Aligned_cols=163 Identities=17% Similarity=0.201 Sum_probs=130.6
Q ss_pred CCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEE
Q 022383 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~ 133 (298)
-.++.||.++....+ |+|+++++|||+|||+.++..+++++...+. .++||++|++-|+.|+.+.++.++.. ..+.
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T 136 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSIYLIP--YSVT 136 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhhccCc--ccce
Confidence 469999999999999 9999999999999999999999999988666 58999999999999999888777654 4555
Q ss_pred EEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCcc-CCCccEEEechhhHhhccc-cHHHHHHHHHhCCCCccEEE
Q 022383 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLR-TRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPDLQVVL 211 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~-~~~l~~vViDE~h~~~~~~-~~~~i~~i~~~~~~~~~~v~ 211 (298)
...||.........+-...+|+|.||+.+...+.++..+ ++.+.++||||||+-.... |...++..+..-....|+++
T Consensus 137 ~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILg 216 (746)
T KOG0354|consen 137 GQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILG 216 (746)
T ss_pred eeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHhhhccccEEE
Confidence 555664333333344455799999999999988875443 5999999999999976654 55566577766666669999
Q ss_pred EEeeCchhH
Q 022383 212 ISATLPHEI 220 (298)
Q Consensus 212 ~SAT~~~~~ 220 (298)
+|||++...
T Consensus 217 LTASpG~~~ 225 (746)
T KOG0354|consen 217 LTASPGSKL 225 (746)
T ss_pred EecCCCccH
Confidence 999997643
No 87
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.85 E-value=2.7e-19 Score=169.32 Aligned_cols=156 Identities=24% Similarity=0.238 Sum_probs=119.0
Q ss_pred CChHHHHHHHHHhhcC---CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCce
Q 022383 55 KPSAIQQRAVMPIIKG---RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~---~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 131 (298)
.+++.|+++++.+.++ +++++.|+||+|||.+|+.++...+.. +.++||++|+++|+.|+.+.+++.. +.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFRARF---GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCC
Confidence 5899999999999874 789999999999999999887776654 5589999999999999999998753 568
Q ss_pred EEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc---cHHHHHH--HHHh
Q 022383 132 AHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG---FKDQIYD--VYRY 202 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~---~~~~i~~--i~~~ 202 (298)
+..++|+.+..+....+ .+.++|+|+|+..+. ..++++++||+||+|...-.. ...+.+. +.+.
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra 290 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRA 290 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHh
Confidence 88999987765544332 356899999997764 457899999999999754221 1111222 2333
Q ss_pred CCCCccEEEEEeeCchhHHHH
Q 022383 203 LPPDLQVVLISATLPHEILEM 223 (298)
Q Consensus 203 ~~~~~~~v~~SAT~~~~~~~~ 223 (298)
...+.+++++|||++......
T Consensus 291 ~~~~~~~il~SATps~~s~~~ 311 (679)
T PRK05580 291 KLENIPVVLGSATPSLESLAN 311 (679)
T ss_pred hccCCCEEEEcCCCCHHHHHH
Confidence 446789999999987554443
No 88
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=5.2e-19 Score=165.07 Aligned_cols=222 Identities=17% Similarity=0.125 Sum_probs=141.7
Q ss_pred CChHHHHHHHHHhh-cC--CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCce
Q 022383 55 KPSAIQQRAVMPII-KG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~-~~--~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 131 (298)
.+++||.+++..+. .| ++.++++|||+|||+..+..+.. + +.++|||||+..|+.|+.+.|.++.......
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~ 328 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQ 328 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCce
Confidence 59999999999877 34 47899999999999887755443 2 2369999999999999999999886444455
Q ss_pred EEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc--------cCccCCCccEEEechhhHhhccccHHHHHHHHHhC
Q 022383 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~--------~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~ 203 (298)
+..+.|+.... .....+|+|+|.+.+...... ..+.-...++||+||+|++... .+..++..+
T Consensus 329 I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~----~fr~il~~l 399 (732)
T TIGR00603 329 ICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA----MFRRVLTIV 399 (732)
T ss_pred EEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH----HHHHHHHhc
Confidence 55666653321 122368999999877543221 1233357889999999998543 344455555
Q ss_pred CCCccEEEEEeeCchhH--HHHHHhcCCCCEEEEecCCccC----cCCceEEEEEec----------------------C
Q 022383 204 PPDLQVVLISATLPHEI--LEMTTKFMTDPVKILVKRDELT----LEGIKQFFVAVE----------------------R 255 (298)
Q Consensus 204 ~~~~~~v~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~----------------------~ 255 (298)
. ....+++|||+.... ...+..+++ |..+.....+.. ...+...-+.|+ .
T Consensus 400 ~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~ 477 (732)
T TIGR00603 400 Q-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVM 477 (732)
T ss_pred C-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhh
Confidence 4 345799999995421 122222222 333322211111 011111111111 1
Q ss_pred ccchHHHHHHHHhhC--CCCcEEEEecchhhHHHHHHHHh
Q 022383 256 EEWKFDTLCDLYDTL--TITQAVIFCNTKRKIYYSVFYFW 293 (298)
Q Consensus 256 ~~~k~~~l~~ll~~~--~~~k~lIf~~s~~~~~~l~~~L~ 293 (298)
...|+..+..+++.+ .+.++||||++...++.++..|.
T Consensus 478 np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~ 517 (732)
T TIGR00603 478 NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG 517 (732)
T ss_pred ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC
Confidence 123566666677654 56799999999999999988874
No 89
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.82 E-value=4.9e-18 Score=166.18 Aligned_cols=220 Identities=20% Similarity=0.240 Sum_probs=137.2
Q ss_pred hHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHH-HHhhccCCCCeEEEEEcCcH----HHHHHHHHHHHH-hhccCCc
Q 022383 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTV-CQTVDTSSREVQALILSPTR----ELATQTEKVILA-IGDFINI 130 (298)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~-~~~~~~~~~~~~~lil~p~~----~l~~q~~~~~~~-~~~~~~~ 130 (298)
+.+-.+++..+.+++.++++|+||||||. .+|. +...... ....+++.-|.+ +++.++.+.+.. ++...|+
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g-~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY 152 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRG-VKGLIGHTQPRRLAARTVANRIAEELETELGGCVGY 152 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCC-CCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceece
Confidence 34444666777788889999999999998 4563 3322221 112333344754 666666666553 3322222
Q ss_pred eEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhH-hhccccHH-HHHHHHHhCCCCcc
Q 022383 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE-MLSRGFKD-QIYDVYRYLPPDLQ 208 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~-~~~~~~~~-~i~~i~~~~~~~~~ 208 (298)
. ... .. ....+++|+|+||++|++.+.... .++++++|||||+|. +++.+|.. .+..++... ++.|
T Consensus 153 ~----vrf---~~---~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r-pdlK 220 (1294)
T PRK11131 153 K----VRF---ND---QVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPRR-PDLK 220 (1294)
T ss_pred e----ecC---cc---ccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhcC-CCce
Confidence 2 111 11 123567999999999999887654 489999999999994 66666553 344443332 4689
Q ss_pred EEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCcc-----chHHHHHHHHh---hCCCCcEEEEec
Q 022383 209 VVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE-----WKFDTLCDLYD---TLTITQAVIFCN 280 (298)
Q Consensus 209 ~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~k~~~l~~ll~---~~~~~k~lIf~~ 280 (298)
+|+||||++. ..+...+...|. +.+... ...+...|....... +....+...+. ....+++||||+
T Consensus 221 vILmSATid~--e~fs~~F~~apv-I~V~Gr---~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLp 294 (1294)
T PRK11131 221 VIITSATIDP--ERFSRHFNNAPI-IEVSGR---TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMS 294 (1294)
T ss_pred EEEeeCCCCH--HHHHHHcCCCCE-EEEcCc---cccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 9999999974 355555544553 444322 234666666654322 12223332222 234579999999
Q ss_pred chhhHHHHHHHHhhhcC
Q 022383 281 TKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 281 s~~~~~~l~~~L~~~~~ 297 (298)
+..+++.+++.|+..++
T Consensus 295 g~~EIe~lae~L~~~~~ 311 (1294)
T PRK11131 295 GEREIRDTADALNKLNL 311 (1294)
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 99999999999987654
No 90
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.82 E-value=1.8e-18 Score=132.13 Aligned_cols=144 Identities=35% Similarity=0.523 Sum_probs=112.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhc
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (298)
+++++.+|||+|||..++..+...... ....+++|++|++.++.|..+.+...... +..+..+.+.............
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcC
Confidence 478999999999999988888877655 23458999999999999999999887654 5677777777666555555567
Q ss_pred CCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeC
Q 022383 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (298)
Q Consensus 151 ~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~ 216 (298)
..+++++|++.+............+.+++|+||+|.+....................+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 789999999999988777655667899999999999876654443223344445678899999996
No 91
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.81 E-value=4.3e-19 Score=160.37 Aligned_cols=224 Identities=18% Similarity=0.159 Sum_probs=138.5
Q ss_pred CCChHHHHHHHHHhhc----CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 022383 54 EKPSAIQQRAVMPIIK----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~----~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (298)
..++++|.+++..+.+ ++..++++|||+|||..++..+... ...++||||+++|+.|+.+.+.+.....
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------KRSTLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------cCCEEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 4599999999999987 8999999999999998876555443 2249999999999999987766654321
Q ss_pred ceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccE
Q 022383 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~ 209 (298)
-.+..+.|+...... ..|.|+|-+.+.+.-....+...+.++|||||||++....+..... .+.....+
T Consensus 108 ~~~g~~~~~~~~~~~-------~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~----~~~~~~~~ 176 (442)
T COG1061 108 DEIGIYGGGEKELEP-------AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPSYRRILE----LLSAAYPR 176 (442)
T ss_pred cccceecCceeccCC-------CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHHHHHHHH----hhhcccce
Confidence 123334443332110 3699999988887432223334478999999999987666553333 33322228
Q ss_pred EEEEeeCchhHH---HHHHhcCCCCEEEEecCCc----cCcCCceEEEEEec----------------------------
Q 022383 210 VLISATLPHEIL---EMTTKFMTDPVKILVKRDE----LTLEGIKQFFVAVE---------------------------- 254 (298)
Q Consensus 210 v~~SAT~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~---------------------------- 254 (298)
+++|||++.... ..+..+++ |..+.....+ ..........+.+.
T Consensus 177 LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (442)
T COG1061 177 LGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRA 255 (442)
T ss_pred eeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhH
Confidence 999999864321 11222221 2232222110 00111111111111
Q ss_pred ---------CccchHHHHHHHHhhC-CCCcEEEEecchhhHHHHHHHHhhhc
Q 022383 255 ---------REEWKFDTLCDLYDTL-TITQAVIFCNTKRKIYYSVFYFWIRW 296 (298)
Q Consensus 255 ---------~~~~k~~~l~~ll~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~ 296 (298)
..+.+...+..++..+ ...+++|||.++..++.++..+...|
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~ 307 (442)
T COG1061 256 ENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPG 307 (442)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCC
Confidence 0112334444445444 35699999999999999999987654
No 92
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=2.9e-18 Score=161.60 Aligned_cols=126 Identities=20% Similarity=0.257 Sum_probs=102.5
Q ss_pred ChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE
Q 022383 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (298)
+++.|--.--.+. +.-+..++||+|||++|.+|++..... +..+.|++|+++||.|.++.+..+...+|+++..+
T Consensus 83 ~ydvQliGg~~Lh--~G~Iaem~TGeGKTL~a~Lpa~~~al~---G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i 157 (896)
T PRK13104 83 HFDVQLIGGMVLH--EGNIAEMRTGEGKTLVATLPAYLNAIS---GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVI 157 (896)
T ss_pred cchHHHhhhhhhc--cCccccccCCCCchHHHHHHHHHHHhc---CCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEE
Confidence 5565554443333 444889999999999999999977654 34689999999999999999999999999999999
Q ss_pred EcCCchHHHHHHhhcCCcEEEeChHHH-HHHHhcc-CccC-----CCccEEEechhhHhh
Q 022383 136 VGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK-TLRT-----RAIKLLVLDESDEML 188 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~~~~~-~~~~-----~~l~~vViDE~h~~~ 188 (298)
.|+.+........ .++|+++||++| ..+++.+ .+++ +.+.++|+||+|.++
T Consensus 158 ~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 158 YPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred eCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 9997766554443 589999999999 8888876 3444 689999999999986
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=5.2e-18 Score=159.63 Aligned_cols=129 Identities=19% Similarity=0.315 Sum_probs=105.5
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHH-HhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVC-QTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~-~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (298)
.|.. |++.|--.--.+.+|+ +..++||+|||+++.+|++ +.+.. ..+-|++|+..||.|.++.+..+...+|
T Consensus 78 lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G----~~V~IvTpn~yLA~rd~e~~~~l~~~LG 150 (830)
T PRK12904 78 LGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTG----KGVHVVTVNDYLAKRDAEWMGPLYEFLG 150 (830)
T ss_pred hCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcC----CCEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 4544 7777877665565664 8899999999999999996 55532 2467999999999999999999999999
Q ss_pred ceEEEEEcCCchHHHHHHhhcCCcEEEeChHHH-HHHHhccC------ccCCCccEEEechhhHhh
Q 022383 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRKT------LRTRAIKLLVLDESDEML 188 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~~~~~~------~~~~~l~~vViDE~h~~~ 188 (298)
+++..+.|+.+..++...+ .++|+++||.+| .++++.+. ...+.+.+.|+||+|.++
T Consensus 151 lsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 151 LSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred CeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 9999999998877665554 489999999999 88887653 346889999999999976
No 94
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.78 E-value=5.5e-17 Score=147.39 Aligned_cols=237 Identities=18% Similarity=0.162 Sum_probs=166.0
Q ss_pred CCCHHHHHHH-HHCCCCCChHHHHHHHHHhhcC------CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 39 GIKDDLLRGI-YQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 39 ~l~~~i~~~l-~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
+....+.+.+ ....|. +|..|++++..|... -+-+++|.-|||||.+++++++..+.. |.++..++||.
T Consensus 246 ~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~---G~Q~ALMAPTE 321 (677)
T COG1200 246 PANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA---GYQAALMAPTE 321 (677)
T ss_pred CccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc---CCeeEEeccHH
Confidence 3444555544 556777 999999999998854 367999999999999999999998876 67899999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHH---Hhh-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHh
Q 022383 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (298)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~ 187 (298)
-||.|.++.+.++....++++..+.|......... .+. +..+++|||..-+ .....++++.++|+||=|++
T Consensus 322 ILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi-----Qd~V~F~~LgLVIiDEQHRF 396 (677)
T COG1200 322 ILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI-----QDKVEFHNLGLVIIDEQHRF 396 (677)
T ss_pred HHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh-----hcceeecceeEEEEeccccc
Confidence 99999999999999999999999999876654433 333 4589999997333 34677899999999999985
Q ss_pred hccccHHHHHHHHHhCCC-CccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHH
Q 022383 188 LSRGFKDQIYDVYRYLPP-DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 266 (298)
Q Consensus 188 ~~~~~~~~i~~i~~~~~~-~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 266 (298)
+-.-+..++.-.. .+.+++||||+-+....+....-.+-..+..-+ .-+..|...++..+.. ..+.+.
T Consensus 397 -----GV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP--~GRkpI~T~~i~~~~~----~~v~e~ 465 (677)
T COG1200 397 -----GVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELP--PGRKPITTVVIPHERR----PEVYER 465 (677)
T ss_pred -----cHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCC--CCCCceEEEEeccccH----HHHHHH
Confidence 3334445555555 688999999986654444332222222222211 1223355555544333 333333
Q ss_pred Hh--hCCCCcEEEEecchhhH--------HHHHHHHhhh
Q 022383 267 YD--TLTITQAVIFCNTKRKI--------YYSVFYFWIR 295 (298)
Q Consensus 267 l~--~~~~~k~lIf~~s~~~~--------~~l~~~L~~~ 295 (298)
+. ...+.++.+.|+-+++. +.+++.|+..
T Consensus 466 i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~ 504 (677)
T COG1200 466 IREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSF 504 (677)
T ss_pred HHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHH
Confidence 32 23567999999877654 4566666643
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=3.5e-17 Score=149.85 Aligned_cols=134 Identities=22% Similarity=0.211 Sum_probs=97.2
Q ss_pred EEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----h
Q 022383 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----E 149 (298)
Q Consensus 74 li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 149 (298)
++.||||+|||.+|+..+...+.. +.++||++|+++|+.|+.+.+++.. +.++..++|+.+..+....+ .
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 478999999999997766555543 5589999999999999999998753 56788889987765543332 3
Q ss_pred cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc-----c-HHHHHHHHHhCCCCccEEEEEeeCchhHH
Q 022383 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----F-KDQIYDVYRYLPPDLQVVLISATLPHEIL 221 (298)
Q Consensus 150 ~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~-----~-~~~i~~i~~~~~~~~~~v~~SAT~~~~~~ 221 (298)
+..+|+|||+..+. ..++++++|||||.|...-+. | ...+... +....+.+++++|||++.+..
T Consensus 75 g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~-ra~~~~~~vil~SATPsles~ 144 (505)
T TIGR00595 75 GEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVY-RAKKFNCPVVLGSATPSLESY 144 (505)
T ss_pred CCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHH-HHHhcCCCEEEEeCCCCHHHH
Confidence 56799999997664 357889999999999864221 1 1222222 233357899999999775433
No 96
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.77 E-value=1e-17 Score=164.58 Aligned_cols=160 Identities=16% Similarity=0.129 Sum_probs=108.0
Q ss_pred CChHHHHHHHHHhh----c-CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 022383 55 KPSAIQQRAVMPII----K-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~----~-~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (298)
.++++|.+++..+. + .+..++++|||+|||.+++. ++..+.......++|||+|+++|+.|..+.|+.+.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 48999999998765 3 36899999999999987543 334444333456899999999999999999987632211
Q ss_pred ceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc-----cCccCCCccEEEechhhHhhc------c--------
Q 022383 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-----KTLRTRAIKLLVLDESDEMLS------R-------- 190 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~-----~~~~~~~l~~vViDE~h~~~~------~-------- 190 (298)
......++...... .......+|+|+|.+++...+.. ....+.++++||+||||+-.. .
T Consensus 492 ~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~ 569 (1123)
T PRK11448 492 QTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQ 569 (1123)
T ss_pred cchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchh
Confidence 11111111100000 11123468999999998776432 124568899999999998531 0
Q ss_pred -ccHHHHHHHHHhCCCCccEEEEEeeCchh
Q 022383 191 -GFKDQIYDVYRYLPPDLQVVLISATLPHE 219 (298)
Q Consensus 191 -~~~~~i~~i~~~~~~~~~~v~~SAT~~~~ 219 (298)
.+...++.++.++. ...|++|||+...
T Consensus 570 ~~~~~~yr~iL~yFd--A~~IGLTATP~r~ 597 (1123)
T PRK11448 570 LDYVSKYRRVLDYFD--AVKIGLTATPALH 597 (1123)
T ss_pred hhHHHHHHHHHhhcC--ccEEEEecCCccc
Confidence 12466778888763 5689999999643
No 97
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.76 E-value=8.5e-18 Score=134.80 Aligned_cols=152 Identities=19% Similarity=0.190 Sum_probs=103.0
Q ss_pred CChHHHHHHHHHhhc-------CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 022383 55 KPSAIQQRAVMPIIK-------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~-------~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (298)
.|+++|.+++..+.+ ++++++.+|||+|||.+++..+..... +++|++|+..|+.|+.+.+..+...
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 389999999998873 689999999999999988755544433 8999999999999999999666433
Q ss_pred CCceEEE------------EEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhcc-----------CccCCCccEEEechh
Q 022383 128 INIQAHA------------CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-----------TLRTRAIKLLVLDES 184 (298)
Q Consensus 128 ~~~~~~~------------~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~-----------~~~~~~l~~vViDE~ 184 (298)
.. .... ..................+++++|.+++....... .......++||+||+
T Consensus 77 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 77 KY-NFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp SE-EEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred hh-hhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 21 1100 01111111222333456789999999999876541 123457789999999
Q ss_pred hHhhccccHHHHHHHHHhCCCCccEEEEEeeCch
Q 022383 185 DEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPH 218 (298)
Q Consensus 185 h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~ 218 (298)
|++....- +..+++ .+...++++|||+.+
T Consensus 156 H~~~~~~~---~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 156 HHYPSDSS---YREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp GCTHHHHH---HHHHHH--SSCCEEEEEESS-S-
T ss_pred hhcCCHHH---HHHHHc--CCCCeEEEEEeCccC
Confidence 99754431 444444 456779999999863
No 98
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.76 E-value=2.7e-16 Score=154.60 Aligned_cols=220 Identities=18% Similarity=0.170 Sum_probs=138.1
Q ss_pred HHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHH-hhccCCceEEEEEcCC
Q 022383 61 QRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQAHACVGGK 139 (298)
Q Consensus 61 ~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~-~~~~~~~~~~~~~~~~ 139 (298)
.+++..+.+++.++++|+||||||.. +|.+-.-.......++++.-|++--+..++.++.+ ++...|-.+++.....
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~ 150 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFH 150 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCC
Confidence 35666677788899999999999984 34332211111222455566998888888776644 3323333333322211
Q ss_pred chHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhH-hhccccHHH-HHHHHHhCCCCccEEEEEeeCc
Q 022383 140 SVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE-MLSRGFKDQ-IYDVYRYLPPDLQVVLISATLP 217 (298)
Q Consensus 140 ~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~-~~~~~~~~~-i~~i~~~~~~~~~~v~~SAT~~ 217 (298)
+ ....+..|.++|++.|++.+.... .+.++++|||||+|. .++.++... +..++... ++.|+|+||||+.
T Consensus 151 ~------~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATld 222 (1283)
T TIGR01967 151 D------QVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATID 222 (1283)
T ss_pred c------ccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCcC
Confidence 1 123457899999999999887643 478999999999994 666665543 55555544 4789999999997
Q ss_pred hhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCc-----cchHHHHHHHHh---hCCCCcEEEEecchhhHHHHH
Q 022383 218 HEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE-----EWKFDTLCDLYD---TLTITQAVIFCNTKRKIYYSV 289 (298)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~k~~~l~~ll~---~~~~~k~lIf~~s~~~~~~l~ 289 (298)
. ..+...+...|. +.+... ...+...|...... .++...+...+. ....+++|||+++..+++.++
T Consensus 223 ~--~~fa~~F~~apv-I~V~Gr---~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~ 296 (1283)
T TIGR01967 223 P--ERFSRHFNNAPI-IEVSGR---TYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAA 296 (1283)
T ss_pred H--HHHHHHhcCCCE-EEECCC---cccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHH
Confidence 4 455554444454 333321 12345555544321 123333333332 124579999999999999999
Q ss_pred HHHhhhc
Q 022383 290 FYFWIRW 296 (298)
Q Consensus 290 ~~L~~~~ 296 (298)
+.|+..+
T Consensus 297 ~~L~~~~ 303 (1283)
T TIGR01967 297 EILRKRN 303 (1283)
T ss_pred HHHHhcC
Confidence 9998765
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.75 E-value=2.6e-16 Score=131.38 Aligned_cols=221 Identities=18% Similarity=0.120 Sum_probs=149.6
Q ss_pred CChHHHHHHHHHhh----cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
.+++.|+.+-+.+. +.++.++.|-||+|||.+..-.+-..+.. |.++.+.+|+...|.+++.++++... +.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~---G~~vciASPRvDVclEl~~Rlk~aF~--~~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ---GGRVCIASPRVDVCLELYPRLKQAFS--NC 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc---CCeEEEecCcccchHHHHHHHHHhhc--cC
Confidence 58999998876654 67899999999999998744344333333 66899999999999999999988744 46
Q ss_pred eEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEE
Q 022383 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v 210 (298)
.+..++|+.+...+ .+++|+|..+|.++-. .++++||||+|.+.=..-......+-+...++.-.|
T Consensus 172 ~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~I 237 (441)
T COG4098 172 DIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATI 237 (441)
T ss_pred CeeeEecCCchhcc-------ccEEEEehHHHHHHHh-------hccEEEEeccccccccCCHHHHHHHHHhhcccCceE
Confidence 67788887665432 5899999988887654 678999999998632221222233344444567799
Q ss_pred EEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchH------HHHHHHHhhC--CCCcEEEEecch
Q 022383 211 LISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF------DTLCDLYDTL--TITQAVIFCNTK 282 (298)
Q Consensus 211 ~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~------~~l~~ll~~~--~~~k~lIf~~s~ 282 (298)
.+|||+++.++..+...-..+..+........+ ..-.++.+.+-..++ -.+..+++.+ .+.+++||+++.
T Consensus 238 ylTATp~k~l~r~~~~g~~~~~klp~RfH~~pL--pvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I 315 (441)
T COG4098 238 YLTATPTKKLERKILKGNLRILKLPARFHGKPL--PVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEI 315 (441)
T ss_pred EEecCChHHHHHHhhhCCeeEeecchhhcCCCC--CCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecch
Confidence 999999988877665433222322222222221 222223233222132 2566666533 456999999999
Q ss_pred hhHHHHHHHHhhhc
Q 022383 283 RKIYYSVFYFWIRW 296 (298)
Q Consensus 283 ~~~~~l~~~L~~~~ 296 (298)
+..+++++.|+.+.
T Consensus 316 ~~~eq~a~~lk~~~ 329 (441)
T COG4098 316 ETMEQVAAALKKKL 329 (441)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999997654
No 100
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.3e-16 Score=149.36 Aligned_cols=239 Identities=17% Similarity=0.212 Sum_probs=157.3
Q ss_pred HHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 45 LRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
.+.+++.....|+..|+-+...+..|++.-+.||||.|||.--++..+- + ...+.+++||+||..|+.|+.+.++++
T Consensus 72 ~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~-~--a~kgkr~yii~PT~~Lv~Q~~~kl~~~ 148 (1187)
T COG1110 72 EEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLY-L--AKKGKRVYIIVPTTTLVRQVYERLKKF 148 (1187)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHH-H--HhcCCeEEEEecCHHHHHHHHHHHHHH
Confidence 3344444334799999999999999999999999999999533222211 1 123569999999999999999999999
Q ss_pred hccCC-ceEEE-EEcCCchHHH---HHHhh-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc-------
Q 022383 125 GDFIN-IQAHA-CVGGKSVGED---IRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG------- 191 (298)
Q Consensus 125 ~~~~~-~~~~~-~~~~~~~~~~---~~~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~------- 191 (298)
+...+ ..+.. +|+..+..+. ..++. ++.||+|+|.+-|..-... +.-.++++|++|++|.++..+
T Consensus 149 ~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNvDriL 226 (1187)
T COG1110 149 AEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNVDRLL 226 (1187)
T ss_pred HhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccHHHHH
Confidence 86655 33322 6666444332 33333 5789999998555543332 111478999999999987543
Q ss_pred ----cHH-------HHHHHHHhC------------------------CCCccEEEEEeeCchhH--HHHHHhcCCCCEEE
Q 022383 192 ----FKD-------QIYDVYRYL------------------------PPDLQVVLISATLPHEI--LEMTTKFMTDPVKI 234 (298)
Q Consensus 192 ----~~~-------~i~~i~~~~------------------------~~~~~~v~~SAT~~~~~--~~~~~~~~~~~~~~ 234 (298)
|.. .+..+...+ .+..++++.|||..+.- ..+.+..++ +
T Consensus 227 ~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg----F 302 (1187)
T COG1110 227 RLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG----F 302 (1187)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC----C
Confidence 111 011111111 13468999999985432 223333332 3
Q ss_pred EecCCccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecc---hhhHHHHHHHHhhhcC
Q 022383 235 LVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNT---KRKIYYSVFYFWIRWI 297 (298)
Q Consensus 235 ~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s---~~~~~~l~~~L~~~~~ 297 (298)
.+......+.+|...|... + -...+..+++... .-.|||++. ++.+++++++|++.|+
T Consensus 303 evG~~~~~LRNIvD~y~~~---~-~~e~~~elvk~lG-~GgLIfV~~d~G~e~aeel~e~Lr~~Gi 363 (1187)
T COG1110 303 EVGSGGEGLRNIVDIYVES---E-SLEKVVELVKKLG-DGGLIFVPIDYGREKAEELAEYLRSHGI 363 (1187)
T ss_pred ccCccchhhhheeeeeccC---c-cHHHHHHHHHHhC-CCeEEEEEcHHhHHHHHHHHHHHHhcCc
Confidence 3333444455666666654 2 4556666666653 478999999 9999999999999986
No 101
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.73 E-value=2.5e-17 Score=153.21 Aligned_cols=172 Identities=14% Similarity=0.143 Sum_probs=138.0
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHH--HHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHH
Q 022383 41 KDDLLRGIYQYGFEKPSAIQQRAV--MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (298)
Q Consensus 41 ~~~i~~~l~~~~~~~~~~~Q~~~~--~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (298)
+....-..+..|...++.||.+++ +.++.++|++..+||+.|||++..+-++..+... ...++++.|....+.+-.
T Consensus 209 ~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~--rr~~llilp~vsiv~Ek~ 286 (1008)
T KOG0950|consen 209 TKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR--RRNVLLILPYVSIVQEKI 286 (1008)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH--hhceeEecceeehhHHHH
Confidence 334444556678899999999997 4578999999999999999999998888876654 337899999999999988
Q ss_pred HHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc--cCccCCCccEEEechhhHhhccccHHHH
Q 022383 119 KVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGFKDQI 196 (298)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~--~~~~~~~l~~vViDE~h~~~~~~~~~~i 196 (298)
..+..+....|+++-.+.|........ ..-++.|||.|+-..+++. ..-++..+++||+||.|++.+.+.+..+
T Consensus 287 ~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~l 362 (1008)
T KOG0950|consen 287 SALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAIL 362 (1008)
T ss_pred hhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHH
Confidence 888888888899887777665544332 2358999999999887765 3456778999999999999999888887
Q ss_pred HHHHHhC-----CCCccEEEEEeeCch
Q 022383 197 YDVYRYL-----PPDLQVVLISATLPH 218 (298)
Q Consensus 197 ~~i~~~~-----~~~~~~v~~SAT~~~ 218 (298)
+.++.++ ....|+|+||||+++
T Consensus 363 E~~l~k~~y~~~~~~~~iIGMSATi~N 389 (1008)
T KOG0950|consen 363 ELLLAKILYENLETSVQIIGMSATIPN 389 (1008)
T ss_pred HHHHHHHHHhccccceeEeeeecccCC
Confidence 7776654 234679999999986
No 102
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.72 E-value=2.2e-15 Score=144.24 Aligned_cols=236 Identities=19% Similarity=0.172 Sum_probs=174.7
Q ss_pred CHHHHHHHHH-CCCCCChHHHHHHHHHhhc----C--CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHH
Q 022383 41 KDDLLRGIYQ-YGFEKPSAIQQRAVMPIIK----G--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (298)
Q Consensus 41 ~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~----~--~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (298)
+......+.. +.|+ -|+-|..+|..+.+ + -|-++||--|-|||.+++-+++..+.. +.+|.++|||.-|
T Consensus 580 d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~---GKQVAvLVPTTlL 655 (1139)
T COG1197 580 DTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD---GKQVAVLVPTTLL 655 (1139)
T ss_pred ChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC---CCeEEEEcccHHh
Confidence 3444444444 4555 89999999999874 3 388999999999999999999998876 5799999999999
Q ss_pred HHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh----cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhc
Q 022383 114 ATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (298)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~ 189 (298)
|+|.++.|++......+++..++.-.+.+++...+. +..||+|||. +++. ..+.++++.++||||-|++.-
T Consensus 656 A~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTH----rLL~-kdv~FkdLGLlIIDEEqRFGV 730 (1139)
T COG1197 656 AQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTH----RLLS-KDVKFKDLGLLIIDEEQRFGV 730 (1139)
T ss_pred HHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEech----HhhC-CCcEEecCCeEEEechhhcCc
Confidence 999999999998888999988888777666654432 6789999997 3333 467789999999999999632
Q ss_pred cccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHH-h
Q 022383 190 RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY-D 268 (298)
Q Consensus 190 ~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll-~ 268 (298)
. -..-++.+..++-++-+|||+-+....+.-..+.+...+..++.+. ..++.++..-++. .+.+.+ .
T Consensus 731 k-----~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R--~pV~T~V~~~d~~-----~ireAI~R 798 (1139)
T COG1197 731 K-----HKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR--LPVKTFVSEYDDL-----LIREAILR 798 (1139)
T ss_pred c-----HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC--cceEEEEecCChH-----HHHHHHHH
Confidence 2 2344455566788999999997766776666666666665554332 2345544433322 222222 2
Q ss_pred -hCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 269 -TLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 269 -~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
...++++-..+|.+++.+.+++.|+..-|
T Consensus 799 El~RgGQvfYv~NrV~~Ie~~~~~L~~LVP 828 (1139)
T COG1197 799 ELLRGGQVFYVHNRVESIEKKAERLRELVP 828 (1139)
T ss_pred HHhcCCEEEEEecchhhHHHHHHHHHHhCC
Confidence 23567999999999999999999987644
No 103
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.70 E-value=3.6e-16 Score=149.52 Aligned_cols=242 Identities=15% Similarity=0.122 Sum_probs=149.9
Q ss_pred CChHHHHHHHHHhhcC---C-cEEEEcCCCCchHHHHHHHHHHhhcc-CCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 022383 55 KPSAIQQRAVMPIIKG---R-DVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIGDFIN 129 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~---~-~~li~~pTG~GKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (298)
...++|..++..+... . .+++.||||+|||.+.+.++...... .....+++++.|++.+++++.++++.+....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 3589999999887743 4 78999999999999999999888766 34567999999999999999999998766544
Q ss_pred ceEEEEEcCCchHHHHHH-----h---------hcCCcEEEeChHHHHHHHhc-cCcc-C--CCccEEEechhhHhhccc
Q 022383 130 IQAHACVGGKSVGEDIRK-----L---------EHGVHVVSGTPGRVCDMIKR-KTLR-T--RAIKLLVLDESDEMLSRG 191 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~-----~---------~~~~~ilV~Tp~~l~~~~~~-~~~~-~--~~l~~vViDE~h~~~~~~ 191 (298)
+.....++.......... . .....+.++||......... ..+. + --.+.+|+||+|.+.+..
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 333323333222211110 0 01134555666555542211 1111 1 133679999999987664
Q ss_pred cHHHHHHHHHhCC-CCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCc---cCcCCceEE-EEEecCccchHHHHHHH
Q 022383 192 FKDQIYDVYRYLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE---LTLEGIKQF-FVAVEREEWKFDTLCDL 266 (298)
Q Consensus 192 ~~~~i~~i~~~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~-~~~~~~~~~k~~~l~~l 266 (298)
....+..++..+. .+..+|+||||+|+.....+.........+...... ..-..+.+. ........ ........
T Consensus 355 ~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~ 433 (733)
T COG1203 355 MLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGP-QEELIELI 433 (733)
T ss_pred hHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhh-hHhhhhcc
Confidence 4444444444443 468899999999999999888876654444332110 000001100 00000000 00111111
Q ss_pred H-hhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 267 Y-DTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 267 l-~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
. ....+++++|.|||+..|.++++.|+..++
T Consensus 434 ~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~ 465 (733)
T COG1203 434 SEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP 465 (733)
T ss_pred hhhhccCCcEEEEEecHHHHHHHHHHHHhcCC
Confidence 2 233457999999999999999999998764
No 104
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.69 E-value=8e-16 Score=141.87 Aligned_cols=153 Identities=20% Similarity=0.228 Sum_probs=111.3
Q ss_pred CCChHHHHHHHHHhh----cC-CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 022383 54 EKPSAIQQRAVMPII----KG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~----~~-~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~ 128 (298)
..++.+|..++..+. +| +-+++++.||+|||.++ +.++.++.....-.++|||+-+++|+.|....+..+....
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 369999999997654 44 35999999999999763 4566677666667799999999999999999888876543
Q ss_pred CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhcc-----CccCCCccEEEechhhHhhccccHHHHHHHHHhC
Q 022383 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-----TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (298)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~-----~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~ 203 (298)
. .+..+.+... ...++|.|+|-+.+...+... .+...++++|||||||+ |.......++.++
T Consensus 243 ~-~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~~I~dYF 309 (875)
T COG4096 243 T-KMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEWSSILDYF 309 (875)
T ss_pred c-ceeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhhhHHHHHHH
Confidence 2 2222222111 124799999999988776543 46668899999999996 3455666888888
Q ss_pred CCCccEEEEEeeCchhHHH
Q 022383 204 PPDLQVVLISATLPHEILE 222 (298)
Q Consensus 204 ~~~~~~v~~SAT~~~~~~~ 222 (298)
..- .+++|||+...+..
T Consensus 310 dA~--~~gLTATP~~~~d~ 326 (875)
T COG4096 310 DAA--TQGLTATPKETIDR 326 (875)
T ss_pred HHH--HHhhccCccccccc
Confidence 532 34559998764443
No 105
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=4.3e-15 Score=140.09 Aligned_cols=127 Identities=19% Similarity=0.249 Sum_probs=100.3
Q ss_pred ChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE
Q 022383 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (298)
|++.|--.--.+ .+.-+..++||.|||+++.+|++..... +..+.|++|+..||.+..+.+..+...+|+++...
T Consensus 83 ~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~---g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i 157 (908)
T PRK13107 83 HFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALT---GKGVHVITVNDYLARRDAENNRPLFEFLGLTVGIN 157 (908)
T ss_pred cCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhc---CCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEe
Confidence 566555433333 3455889999999999999999876654 33599999999999999999999999999999999
Q ss_pred EcCCchHHHHHHhhcCCcEEEeChHHH-HHHHhcc-CccC-----CCccEEEechhhHhhc
Q 022383 136 VGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK-TLRT-----RAIKLLVLDESDEMLS 189 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~~~~~-~~~~-----~~l~~vViDE~h~~~~ 189 (298)
.++.+..... -.-.++|+++||..| +.+++.+ .++. +.+.+.||||+|.++-
T Consensus 158 ~~~~~~~~r~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLi 216 (908)
T PRK13107 158 VAGLGQQEKK--AAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILI 216 (908)
T ss_pred cCCCCHHHHH--hcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhcc
Confidence 8887754332 223689999999999 8888775 3333 7889999999999863
No 106
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.63 E-value=1.5e-14 Score=137.16 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=99.7
Q ss_pred ChHHHHHHHHHhh----c------CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 022383 56 PSAIQQRAVMPII----K------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (298)
Q Consensus 56 ~~~~Q~~~~~~~~----~------~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (298)
++++|.+++..+. . ++..+++.|||||||++.+..+...+ .....+++|||+|+.+|..|+.+.+..++
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 7899999998763 2 25799999999999988765554433 33446799999999999999999998875
Q ss_pred ccCCceEEEEEcCCchHHHHHHhh-cCCcEEEeChHHHHHHHhcc--CccCCCc-cEEEechhhHhhccccHHHHHHHH-
Q 022383 126 DFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK--TLRTRAI-KLLVLDESDEMLSRGFKDQIYDVY- 200 (298)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~~~~~--~~~~~~l-~~vViDE~h~~~~~~~~~~i~~i~- 200 (298)
... . .+..+.......+. ...+|+|+|.++|...+... .+...+- .+||+||||+.....+. ..+
T Consensus 318 ~~~-~-----~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~----~~l~ 387 (667)
T TIGR00348 318 KDC-A-----ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELA----KNLK 387 (667)
T ss_pred CCC-C-----cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHH----HHHH
Confidence 310 0 11112222222232 34689999999998644331 1211111 28999999986433333 333
Q ss_pred HhCCCCccEEEEEeeCch
Q 022383 201 RYLPPDLQVVLISATLPH 218 (298)
Q Consensus 201 ~~~~~~~~~v~~SAT~~~ 218 (298)
+.+ ++...+++|||+-.
T Consensus 388 ~~~-p~a~~lGfTaTP~~ 404 (667)
T TIGR00348 388 KAL-KNASFFGFTGTPIF 404 (667)
T ss_pred hhC-CCCcEEEEeCCCcc
Confidence 344 46789999999853
No 107
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.61 E-value=4.8e-14 Score=131.92 Aligned_cols=215 Identities=20% Similarity=0.183 Sum_probs=144.2
Q ss_pred CCChHHHHHHHHHhhcC----CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 022383 54 EKPSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~----~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (298)
..+++-|+.++..+.+. +..++.|.||||||.+|+-.+-..+.. |..+|+|+|-.+|..|+.++|+... +
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---GkqvLvLVPEI~Ltpq~~~rf~~rF---g 270 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---GKQVLVLVPEIALTPQLLARFKARF---G 270 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---CCEEEEEeccccchHHHHHHHHHHh---C
Confidence 36789999999998755 679999999999999999888777766 5689999999999999999998764 5
Q ss_pred ceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhh---ccc---cHHHHHHH
Q 022383 130 IQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML---SRG---FKDQIYDV 199 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~---~~~---~~~~i~~i 199 (298)
.++..++++.+..+....+ .+...|+|||-..++ ..++++.+||+||-|--. +++ ...++ .+
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdv-A~ 342 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDV-AV 342 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHHH-HH
Confidence 7888899887766554443 467899999975554 457899999999999632 111 12222 23
Q ss_pred HHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchH-----HHHHHHHh--hCCC
Q 022383 200 YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF-----DTLCDLYD--TLTI 272 (298)
Q Consensus 200 ~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~-----~~l~~ll~--~~~~ 272 (298)
.+....++++|+-|||++ ++++....-+....+..........-....++.+..+..+. ..+.+.++ ...+
T Consensus 343 ~Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~g 420 (730)
T COG1198 343 LRAKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERG 420 (730)
T ss_pred HHHHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcC
Confidence 333335789999999966 55555443332233333222222212233334444333222 23444442 3356
Q ss_pred CcEEEEecchhh
Q 022383 273 TQAVIFCNTKRK 284 (298)
Q Consensus 273 ~k~lIf~~s~~~ 284 (298)
+++|+|.|++--
T Consensus 421 eQ~llflnRRGy 432 (730)
T COG1198 421 EQVLLFLNRRGY 432 (730)
T ss_pred CeEEEEEccCCc
Confidence 799999998753
No 108
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.57 E-value=6.6e-13 Score=126.15 Aligned_cols=224 Identities=16% Similarity=0.207 Sum_probs=147.6
Q ss_pred ChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHH-HhhccCCceEEE
Q 022383 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQAHA 134 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~~~~~~~ 134 (298)
.+....+...++.+.+-++|+||||+|||...-.-+++.-.. .+..+.+.-|+|--|..+++++- .++...|-.|++
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~--~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY 128 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG--IAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGY 128 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc--cCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeE
Confidence 455666777888889999999999999998765555555432 23356667799988888887774 344444544544
Q ss_pred EEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhh-ccc-cHHHHHHHHHhCCCCccEEEE
Q 022383 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SRG-FKDQIYDVYRYLPPDLQVVLI 212 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~-~~~-~~~~i~~i~~~~~~~~~~v~~ 212 (298)
.....+ ....+..|-+.|.+.|++.+..... ++.+++|||||+|.=. +.+ ..-.+..++..++...++|+|
T Consensus 129 ~iRfe~------~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 129 SIRFES------KVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred EEEeec------cCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 332211 1223468999999999999987544 7899999999999721 111 223445556666767999999
Q ss_pred EeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccc-hHHHHHHHHh---hCCCCcEEEEecchhhHHHH
Q 022383 213 SATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEW-KFDTLCDLYD---TLTITQAVIFCNTKRKIYYS 288 (298)
Q Consensus 213 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-k~~~l~~ll~---~~~~~k~lIf~~s~~~~~~l 288 (298)
|||+..+ .+. .++++.-.+.+.. ....++.+|......++ -...+...+. ....+.+|||.+...+.+..
T Consensus 202 SATld~~--rfs-~~f~~apvi~i~G---R~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~ 275 (845)
T COG1643 202 SATLDAE--RFS-AYFGNAPVIEIEG---RTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERT 275 (845)
T ss_pred ecccCHH--HHH-HHcCCCCEEEecC---CccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHH
Confidence 9999853 333 3455333333321 22345555544443333 3344444443 33467999999999999999
Q ss_pred HHHHhh
Q 022383 289 VFYFWI 294 (298)
Q Consensus 289 ~~~L~~ 294 (298)
++.|++
T Consensus 276 ~~~L~~ 281 (845)
T COG1643 276 AEWLEK 281 (845)
T ss_pred HHHHHh
Confidence 999987
No 109
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.56 E-value=1.6e-14 Score=134.56 Aligned_cols=160 Identities=15% Similarity=0.166 Sum_probs=119.6
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc-eEE
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI-QAH 133 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~-~~~ 133 (298)
.|..||.+.+...-.+.+++|+|||.+|||++--..+ +.+.......-+|++.|+++|++|+............+ +..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~i-EKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~ 589 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAI-EKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGV 589 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHH-HHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccch
Confidence 4889999999999999999999999999997644334 44444444558999999999999999888765432222 122
Q ss_pred EEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc---cCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEE
Q 022383 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR---KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVV 210 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~---~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v 210 (298)
.+.|....+++.. .-.|+|+|+.|+.+.+++.. ...+..+++++|+||+|.++...-...++.++-.. .++++
T Consensus 590 sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP~L 665 (1330)
T KOG0949|consen 590 SLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCPFL 665 (1330)
T ss_pred hhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCCee
Confidence 2333333332222 23589999999999999877 45677999999999999998776566666776666 48899
Q ss_pred EEEeeCchh
Q 022383 211 LISATLPHE 219 (298)
Q Consensus 211 ~~SAT~~~~ 219 (298)
++|||+.+.
T Consensus 666 ~LSATigN~ 674 (1330)
T KOG0949|consen 666 VLSATIGNP 674 (1330)
T ss_pred EEecccCCH
Confidence 999999653
No 110
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=1.2e-12 Score=123.36 Aligned_cols=130 Identities=17% Similarity=0.259 Sum_probs=101.1
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
.|. .|++.|--.--.+..|+ +....||+|||+++.+|++-.... |..+-+++|+.-||.|-++.+..+...+|+
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~---G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl 150 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT---GKGVHVVTVNEYLSSRDATEMGELYRWLGL 150 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc---CCCeEEEeccHHHHHhhHHHHHHHHHhcCC
Confidence 454 48888877766666666 899999999999998888776655 557889999999999999999999999999
Q ss_pred eEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHH-HHhcc------CccCCCccEEEechhhHhh
Q 022383 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRK------TLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~-~~~~~------~~~~~~l~~vViDE~h~~~ 188 (298)
++....++.+..+..... .+||+.+|...|.- +++.+ ....+.+.+.||||+|.++
T Consensus 151 ~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred eEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 999998877665544333 57999999877652 33332 1223678899999999875
No 111
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.51 E-value=6e-13 Score=129.88 Aligned_cols=94 Identities=22% Similarity=0.237 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHH----HhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHH
Q 022383 40 IKDDLLRGIYQYGFEKPSAIQQRAVM----PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (298)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~----~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 115 (298)
+++.....+...||+ +++.|.++++ .+.+++++++.||||+|||++|++|++.... .+.+++|.+||++|..
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~ 306 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQS 306 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHH
Confidence 445677778788888 8899998666 4557899999999999999999999988665 2448999999999999
Q ss_pred HHHH-HHHHhhccCC--ceEEEEEc
Q 022383 116 QTEK-VILAIGDFIN--IQAHACVG 137 (298)
Q Consensus 116 q~~~-~~~~~~~~~~--~~~~~~~~ 137 (298)
|+.. .+..+.+..+ +++..+.|
T Consensus 307 Ql~~~~~~~l~~~~~~~~~~~~~kG 331 (850)
T TIGR01407 307 QLLEKDIPLLNEILNFKINAALIKG 331 (850)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEc
Confidence 9865 4544444333 55555543
No 112
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.44 E-value=2.9e-11 Score=109.63 Aligned_cols=221 Identities=14% Similarity=0.207 Sum_probs=140.0
Q ss_pred ChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHH-HhhccCCceEEE
Q 022383 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQAHA 134 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~~~~~~~ 134 (298)
...+-.+.+..+.+++-+++.|+||||||.-.--.+.+.-... .+ ++-+.-|+|--|..++.+.. .++...|-.+++
T Consensus 52 I~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~-~g-~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 52 IYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFAS-SG-KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhccccc-CC-cEEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 3444556777788889999999999999965433333332222 22 46667799987777776553 444444545544
Q ss_pred EE--cCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHh--hccccHHHHHHHHHhCCCCccEE
Q 022383 135 CV--GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM--LSRGFKDQIYDVYRYLPPDLQVV 210 (298)
Q Consensus 135 ~~--~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~--~~~~~~~~i~~i~~~~~~~~~~v 210 (298)
.. .+... ....|...|.+.|++-+.... .++++++||+||||.= ..+-..-.++.++++. +..++|
T Consensus 130 ~IRFed~ts--------~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R-~~LklI 199 (674)
T KOG0922|consen 130 TIRFEDSTS--------KDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKKR-PDLKLI 199 (674)
T ss_pred EEEecccCC--------CceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhcC-CCceEE
Confidence 33 22211 235899999999998665432 3679999999999961 1111222333344433 467899
Q ss_pred EEEeeCchhHHHHHHhcCCC-CEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHh---hCCCCcEEEEecchhhHH
Q 022383 211 LISATLPHEILEMTTKFMTD-PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD---TLTITQAVIFCNTKRKIY 286 (298)
Q Consensus 211 ~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~---~~~~~k~lIf~~s~~~~~ 286 (298)
++|||+.. +....|+.. |....-. ....++..|..-+..++-...+...++ ..+.+-+|||....++.+
T Consensus 200 imSATlda---~kfS~yF~~a~i~~i~G----R~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe 272 (674)
T KOG0922|consen 200 IMSATLDA---EKFSEYFNNAPILTIPG----RTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIE 272 (674)
T ss_pred EEeeeecH---HHHHHHhcCCceEeecC----CCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Confidence 99999983 333345544 4433322 223466666665555544445555444 345679999999999999
Q ss_pred HHHHHHhhh
Q 022383 287 YSVFYFWIR 295 (298)
Q Consensus 287 ~l~~~L~~~ 295 (298)
.+++.|++.
T Consensus 273 ~~~~~l~e~ 281 (674)
T KOG0922|consen 273 AACELLRER 281 (674)
T ss_pred HHHHHHHHH
Confidence 999999765
No 113
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.44 E-value=1.4e-11 Score=119.49 Aligned_cols=158 Identities=18% Similarity=0.083 Sum_probs=97.2
Q ss_pred CChHHHHHHHHHhhcC--CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceE
Q 022383 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 132 (298)
.|.|||.++...+... ..+++.-.+|.|||.-+.+.+...+.. ....++|||||. .|..|+...+.+.. ++..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~-g~~~rvLIVvP~-sL~~QW~~El~~kF---~l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLT-GRAERVLILVPE-TLQHQWLVEMLRRF---NLRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHc-CCCCcEEEEcCH-HHHHHHHHHHHHHh---CCCe
Confidence 4999999998776543 478999999999997765544444333 333479999997 89999988875432 3444
Q ss_pred EEEEcCCchHHHH--HHhhcCCcEEEeChHHHHHHH-hccCccCCCccEEEechhhHhhcc--ccHHHHHHHHHhCCCCc
Q 022383 133 HACVGGKSVGEDI--RKLEHGVHVVSGTPGRVCDMI-KRKTLRTRAIKLLVLDESDEMLSR--GFKDQIYDVYRYLPPDL 207 (298)
Q Consensus 133 ~~~~~~~~~~~~~--~~~~~~~~ilV~Tp~~l~~~~-~~~~~~~~~l~~vViDE~h~~~~~--~~~~~i~~i~~~~~~~~ 207 (298)
..+.++....... .......+++|+|.+.+...- ....+.-...++||+||||++-.. .-...+..+........
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~ 306 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIP 306 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhccC
Confidence 4443332111000 011123589999987776421 111222347899999999998521 11122333322222345
Q ss_pred cEEEEEeeCc
Q 022383 208 QVVLISATLP 217 (298)
Q Consensus 208 ~~v~~SAT~~ 217 (298)
.++++|||+.
T Consensus 307 ~~LLLTATP~ 316 (956)
T PRK04914 307 GVLLLTATPE 316 (956)
T ss_pred CEEEEEcCcc
Confidence 6899999974
No 114
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.42 E-value=3.6e-12 Score=118.46 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=51.5
Q ss_pred HHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 022383 64 VMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (298)
Q Consensus 64 ~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (298)
...+.+++.+++.||||+|||++|++|++..+... .+.++||++||++|.+|+.+.+..+.
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-PDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCceEEEECCcHHHHHHHHHHHHHHH
Confidence 34455788999999999999999999998876532 24689999999999999999888776
No 115
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.42 E-value=2.9e-12 Score=122.46 Aligned_cols=221 Identities=14% Similarity=0.202 Sum_probs=149.6
Q ss_pred CCChHHHHHHHHHhh-cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHH-HhhccCCce
Q 022383 54 EKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQ 131 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~-~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~~~~ 131 (298)
...++.|.++++.+. .+.++++.+|+|+|||.|+-++++. .....+++++.|..+.+..++..+. ++.+..|..
T Consensus 1142 ~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~ 1217 (1674)
T KOG0951|consen 1142 QDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLR 1217 (1674)
T ss_pred cccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecchHHHHHHHHHHHHHhhccccCce
Confidence 344899999999876 4678999999999999999888877 2234589999999999988877664 566667888
Q ss_pred EEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHH------HHHHHHHhCCC
Q 022383 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKD------QIYDVYRYLPP 205 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~------~i~~i~~~~~~ 205 (298)
++.+.|..+.+-.. ...-+++|+||++...+ + ..+.++++|.||.|.+... ++. .++.+-+.+-+
T Consensus 1218 ~~~l~ge~s~~lkl---~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~q~~k 1288 (1674)
T KOG0951|consen 1218 IVKLTGETSLDLKL---LQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGV-YGAVYEVICSMRYIASQLEK 1288 (1674)
T ss_pred EEecCCccccchHH---hhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhccc-CCceEEEEeeHHHHHHHHHh
Confidence 88888877655332 23359999999998776 2 5778999999999998733 221 15666666667
Q ss_pred CccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCcc----------chHHHHHHHHhhCCCCcE
Q 022383 206 DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE----------WKFDTLCDLYDTLTITQA 275 (298)
Q Consensus 206 ~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----------~k~~~l~~ll~~~~~~k~ 275 (298)
+.+++.+|..+.+. .+++ ++ .+..+.....+..+....-.+...+-.. .-+.++... ...+++.
T Consensus 1289 ~ir~v~ls~~lana-~d~i--g~-s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~--a~~~k~~ 1362 (1674)
T KOG0951|consen 1289 KIRVVALSSSLANA-RDLI--GA-SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRH--AGNRKPA 1362 (1674)
T ss_pred heeEEEeehhhccc-hhhc--cc-cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHH--hcCCCCe
Confidence 88999999998765 3332 11 2222322222333323222222222211 111122211 2345799
Q ss_pred EEEecchhhHHHHHHHHh
Q 022383 276 VIFCNTKRKIYYSVFYFW 293 (298)
Q Consensus 276 lIf~~s~~~~~~l~~~L~ 293 (298)
+||+++++.|..++..|-
T Consensus 1363 ~vf~p~rk~~~~~a~~~~ 1380 (1674)
T KOG0951|consen 1363 IVFLPTRKHARLVAVDLV 1380 (1674)
T ss_pred EEEeccchhhhhhhhccc
Confidence 999999999999887653
No 116
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.41 E-value=5.8e-12 Score=121.74 Aligned_cols=83 Identities=25% Similarity=0.321 Sum_probs=65.3
Q ss_pred CCCCCChHHHHHHHHHh----hcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHH-HHHHHhh
Q 022383 51 YGFEKPSAIQQRAVMPI----IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE-KVILAIG 125 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~----~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~-~~~~~~~ 125 (298)
.||+ .++-|.+....+ .+++.++++|+||+|||++|++|++... .+.++||++||++|++|+. ..+..+.
T Consensus 242 ~~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 242 LGLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CCCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 3555 899999866554 4678999999999999999999988754 2458999999999999994 6677777
Q ss_pred ccCCceEEEEEcC
Q 022383 126 DFINIQAHACVGG 138 (298)
Q Consensus 126 ~~~~~~~~~~~~~ 138 (298)
+..++++..+.|+
T Consensus 317 ~~~~~~~~~~kg~ 329 (820)
T PRK07246 317 EVFHIDCHSLKGP 329 (820)
T ss_pred HhcCCcEEEEECC
Confidence 6667766665544
No 117
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=6.4e-11 Score=109.88 Aligned_cols=130 Identities=15% Similarity=0.234 Sum_probs=102.0
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
.|.. |++.|--..-.+..|+ +....||.|||+++.+|++..... |..+-+++|+.-||.+-++.+..+...+|+
T Consensus 75 lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~---G~~VhvvT~NdyLA~RDae~m~~ly~~LGL 148 (764)
T PRK12326 75 LGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ---GRRVHVITVNDYLARRDAEWMGPLYEALGL 148 (764)
T ss_pred cCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc---CCCeEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 4544 8888988887787775 679999999999999888776544 557899999999999999999999999999
Q ss_pred eEEEEEcCCchHHHHHHhhcCCcEEEeChHHHH-HHHhcc------CccCCCccEEEechhhHhh
Q 022383 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRK------TLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~-~~~~~~------~~~~~~l~~vViDE~h~~~ 188 (298)
++....++.+..+....+ .|||+.+|...|. .+++.+ ....+.+.+.||||+|.++
T Consensus 149 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 149 TVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 999988887765444443 4799999987754 233322 2234678999999999875
No 118
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=5.7e-11 Score=112.69 Aligned_cols=126 Identities=18% Similarity=0.231 Sum_probs=96.5
Q ss_pred ChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE
Q 022383 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (298)
+++.|--.--.+ .+.-+..+.||.|||+++.+|++-.... |..+-+++|+..||.+-++.+..+...+|+++..+
T Consensus 83 ~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~---G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i 157 (913)
T PRK13103 83 HFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALS---GKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIV 157 (913)
T ss_pred cchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 666665443333 4455789999999999999888765544 55789999999999999999999999999999998
Q ss_pred EcCCchHHHHHHhhcCCcEEEeChHHH-HHHHhcc------CccCCCccEEEechhhHhh
Q 022383 136 VGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~~~~~------~~~~~~l~~vViDE~h~~~ 188 (298)
.++.+..+....+. ++|++||...| +.+++.+ ....+.+.++||||+|.++
T Consensus 158 ~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 158 TPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred CCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 88776655444443 89999999876 2333332 1224889999999999975
No 119
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.34 E-value=3.2e-12 Score=95.41 Aligned_cols=136 Identities=15% Similarity=0.239 Sum_probs=81.2
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (298)
+|+-.++...+|+|||.-.+.-++..-... +.++|+|.|||.++.++.+.++.. .+++. ...-. ...
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~~~----~~~~~---t~~~~----~~~ 69 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALKGL----PVRFH---TNARM----RTH 69 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTTTS----SEEEE---STTSS-------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHhcC----CcccC---ceeee----ccc
Confidence 456678899999999987666555544332 558999999999999999977543 22221 11110 122
Q ss_pred hcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc--cHHHHHHHHHhCCCCccEEEEEeeCchhH
Q 022383 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG--FKDQIYDVYRYLPPDLQVVLISATLPHEI 220 (298)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~--~~~~i~~i~~~~~~~~~~v~~SAT~~~~~ 220 (298)
.++.-|-|.|-..+.+.+.+ .....++++||+||+|..-... +...+..... . ....+|++|||+|-..
T Consensus 70 ~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~-~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE-S-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH-T-TS-EEEEEESS-TT--
T ss_pred cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhh-c-cCeeEEEEeCCCCCCC
Confidence 34557888898888887766 5557899999999999852221 2222222211 1 2467999999998653
No 120
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.34 E-value=2.3e-10 Score=108.98 Aligned_cols=245 Identities=16% Similarity=0.120 Sum_probs=152.6
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHH
Q 022383 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (298)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (298)
.++...+.+....--..+..+.+.++++.+.+.++++|.||+|||.-.---+++....+....++++--|+|--|..+++
T Consensus 158 ~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAe 237 (924)
T KOG0920|consen 158 KSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAE 237 (924)
T ss_pred hhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHH
Confidence 33444444444433457788899999999999999999999999977665666665444445567777799988888888
Q ss_pred HHHH-hhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc-ccHHHHH
Q 022383 120 VILA-IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIY 197 (298)
Q Consensus 120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~-~~~~~i~ 197 (298)
+..+ .+...|-.+++-.+..+ .......+++||.+.|++.+.. .-.+..+..+|+||+|.=.-+ +|.-.+.
T Consensus 238 RVa~ER~~~~g~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~l 310 (924)
T KOG0920|consen 238 RVAKERGESLGEEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILL 310 (924)
T ss_pred HHHHHhccccCCeeeEEEeeec------ccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHH
Confidence 7743 33334444444332211 1112358999999999999887 455789999999999973222 3433333
Q ss_pred HHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCc----------------cCcCCceEE------------
Q 022383 198 DVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE----------------LTLEGIKQF------------ 249 (298)
Q Consensus 198 ~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~i~~~------------ 249 (298)
+.+-..++..++|+||||+.. +. ...|++....+.+.... .......+.
T Consensus 311 k~lL~~~p~LkvILMSAT~da--e~-fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (924)
T KOG0920|consen 311 KDLLPRNPDLKVILMSATLDA--EL-FSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLAR 387 (924)
T ss_pred HHHhhhCCCceEEEeeeecch--HH-HHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCcccccc
Confidence 333334478999999999983 33 33444433333222110 000000011
Q ss_pred EEEecCccchHHHHHHHHh----hCCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 250 FVAVEREEWKFDTLCDLYD----TLTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 250 ~~~~~~~~~k~~~l~~ll~----~~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
......+ ..++.+.+++. ....+.+|||.+...+...+++.|...
T Consensus 388 ~~~~~~~-id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~ 436 (924)
T KOG0920|consen 388 LKLWEPE-IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVN 436 (924)
T ss_pred chhcccc-ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhc
Confidence 0001111 24555555553 333569999999999999999999653
No 121
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.33 E-value=3.3e-10 Score=99.26 Aligned_cols=250 Identities=15% Similarity=0.139 Sum_probs=150.1
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC
Q 022383 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (298)
Q Consensus 30 ~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (298)
+.+..|+..+.++...+.|++..---.+..+.+.+..+.+++-++++|.||||||.-.--+.+....... ..+..--|
T Consensus 22 k~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~--~~v~CTQp 99 (699)
T KOG0925|consen 22 KAINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL--TGVACTQP 99 (699)
T ss_pred hhcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--cceeecCc
Confidence 3488999999999999999997555566666777777888999999999999999544333333322221 24566668
Q ss_pred cHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHh--
Q 022383 110 TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM-- 187 (298)
Q Consensus 110 ~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~-- 187 (298)
.+.-+-+++.+.-. ..++..+--.|-.-..+.+.. .+.-+-.+|.++|++-.-. .-.+.+.+++|+||+|.=
T Consensus 100 rrvaamsva~RVad---EMDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams-~p~l~~y~viiLDeahERtl 173 (699)
T KOG0925|consen 100 RRVAAMSVAQRVAD---EMDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMS-DPLLGRYGVIILDEAHERTL 173 (699)
T ss_pred hHHHHHHHHHHHHH---HhccccchhccccccccccCC--hhHHHHHhcchHHHHHHhh-CcccccccEEEechhhhhhH
Confidence 88877777664432 112222111111000010000 0000112444444443322 233678999999999972
Q ss_pred hccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHH
Q 022383 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267 (298)
Q Consensus 188 ~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll 267 (298)
..+...-.+..+++.. +..++|.||||+-. .....|++++-.+.+.. ...++.+|..-.+.+.-..++...+
T Consensus 174 ATDiLmGllk~v~~~r-pdLk~vvmSatl~a---~Kfq~yf~n~Pll~vpg----~~PvEi~Yt~e~erDylEaairtV~ 245 (699)
T KOG0925|consen 174 ATDILMGLLKEVVRNR-PDLKLVVMSATLDA---EKFQRYFGNAPLLAVPG----THPVEIFYTPEPERDYLEAAIRTVL 245 (699)
T ss_pred HHHHHHHHHHHHHhhC-CCceEEEeecccch---HHHHHHhCCCCeeecCC----CCceEEEecCCCChhHHHHHHHHHH
Confidence 1222344555566665 48999999999863 33445667666666543 2234555544444443333444444
Q ss_pred h---hCCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 268 D---TLTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 268 ~---~~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
+ ....+-+|+|....++.+..++.+.+.
T Consensus 246 qih~~ee~GDilvFLtgeeeIe~aC~~i~re 276 (699)
T KOG0925|consen 246 QIHMCEEPGDILVFLTGEEEIEDACRKISRE 276 (699)
T ss_pred HHHhccCCCCEEEEecCHHHHHHHHHHHHHH
Confidence 4 234578999999999999998887643
No 122
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=7.7e-11 Score=108.59 Aligned_cols=224 Identities=17% Similarity=0.211 Sum_probs=131.0
Q ss_pred HHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC---CCCeEEEEEcCcHHHHHHHHHHHH-HhhccCCceE--EE
Q 022383 61 QRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTRELATQTEKVIL-AIGDFINIQA--HA 134 (298)
Q Consensus 61 ~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~---~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~~~~~--~~ 134 (298)
+++..+|..+.-++|||.||||||.-.---++..-... ..+..+=|--|+|--|..++.+.- .++. ++-.+ .+
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYqI 340 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQI 340 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeEEE
Confidence 45667777788899999999999965333333332111 122234455598877777766553 3333 33333 33
Q ss_pred EEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhh--cc---ccHHHHHHHHHhCCC----
Q 022383 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML--SR---GFKDQIYDVYRYLPP---- 205 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~--~~---~~~~~i~~i~~~~~~---- 205 (298)
.+.++ +.....|.+.|.+-|++-+.+ .+.+.+++.||+||||.=. .+ |+...+-.+.....+
T Consensus 341 Rfd~t--------i~e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~ 411 (1172)
T KOG0926|consen 341 RFDGT--------IGEDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQ 411 (1172)
T ss_pred Eeccc--------cCCCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 33332 223468999999999987775 4668899999999999621 00 122222222222222
Q ss_pred --CccEEEEEeeCchhHHHHHHhcCCC-CEEEEecCCccCcCCceEEEEEecCccchHHHHHHHH---hhCCCCcEEEEe
Q 022383 206 --DLQVVLISATLPHEILEMTTKFMTD-PVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY---DTLTITQAVIFC 279 (298)
Q Consensus 206 --~~~~v~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll---~~~~~~k~lIf~ 279 (298)
..+.|+||||+--......+.+++. |-.+.++.... .+.-.+..-...++-.++..... +..+.+-+|||+
T Consensus 412 ~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQf---PVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFv 488 (1172)
T KOG0926|consen 412 IKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQF---PVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFV 488 (1172)
T ss_pred cCceeEEEEeeeEEecccccCceecCCCCceeeeecccC---ceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 5679999999864333333344442 22333332221 12211111112222333333333 355778999999
Q ss_pred cchhhHHHHHHHHhhhcC
Q 022383 280 NTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 280 ~s~~~~~~l~~~L~~~~~ 297 (298)
...+++..+++.|+++++
T Consensus 489 TGQqEV~qL~~kLRK~~p 506 (1172)
T KOG0926|consen 489 TGQQEVDQLCEKLRKRFP 506 (1172)
T ss_pred eChHHHHHHHHHHHhhCc
Confidence 999999999999999865
No 123
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.28 E-value=7.6e-11 Score=101.00 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=57.8
Q ss_pred CCCCChHHHHHHHH----HhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCC---CeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 52 GFEKPSAIQQRAVM----PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR---EVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 52 ~~~~~~~~Q~~~~~----~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~---~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
-|. ++|.|.+.+. .+..|+++++.+|||+|||++++.|++..+..... +.+++|.++|..+..|....++++
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 344 6999999554 45578999999999999999999999876554322 237999999999999988777765
No 124
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.28 E-value=7.6e-11 Score=101.00 Aligned_cols=72 Identities=19% Similarity=0.221 Sum_probs=57.8
Q ss_pred CCCCChHHHHHHHH----HhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCC---CeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 52 GFEKPSAIQQRAVM----PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR---EVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 52 ~~~~~~~~Q~~~~~----~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~---~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
-|. ++|.|.+.+. .+..|+++++.+|||+|||++++.|++..+..... +.+++|.++|..+..|....++++
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 344 6999999554 45578999999999999999999999876554322 237999999999999988777765
No 125
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.27 E-value=1e-10 Score=101.04 Aligned_cols=143 Identities=19% Similarity=0.156 Sum_probs=84.2
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCC--CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (298)
.+..++.-.+|+|||...+..+.......+. ...+||+||. .+..++...+.++.....+++..+.|+.........
T Consensus 25 ~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~ 103 (299)
T PF00176_consen 25 PRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKN 103 (299)
T ss_dssp T-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSS
T ss_pred CCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccccc
Confidence 4689999999999997765444322222111 1259999999 888999999999876546677666665522222223
Q ss_pred hhcCCcEEEeChHHHHHHHhc---cCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeC
Q 022383 148 LEHGVHVVSGTPGRVCDMIKR---KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (298)
Q Consensus 148 ~~~~~~ilV~Tp~~l~~~~~~---~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~ 216 (298)
.....+++|+|.+.+...... ..+...+.++||+||+|.+-+. .......+..+. ...++++|||+
T Consensus 104 ~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 104 QLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRYKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp SCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHHHHHHCCC-ECEEEEE-SS-
T ss_pred ccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccccccccccc-cceEEeecccc
Confidence 345678999999998811110 1111234899999999998333 223333344454 56688899997
No 126
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.23 E-value=2.5e-10 Score=112.39 Aligned_cols=65 Identities=22% Similarity=0.229 Sum_probs=53.9
Q ss_pred CCCCChHHHHHHHHHhh----cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHH
Q 022383 52 GFEKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (298)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~----~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (298)
||+ +++-|.+....+. +++.+++.||||+|||++|++|++...... +.+++|-++|+.|-+|+..
T Consensus 255 ~~e-~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~--~~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 255 KYE-KREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKK--EEPVVISTYTIQLQQQLLE 323 (928)
T ss_pred CCc-CCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhcc--CCeEEEEcCCHHHHHHHHH
Confidence 444 9999999766544 678999999999999999999998655433 4589999999999999876
No 127
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.19 E-value=9.3e-10 Score=104.15 Aligned_cols=130 Identities=19% Similarity=0.236 Sum_probs=96.8
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
.|+. |++.|--.. +.-.+.-+..+.||.|||+++.+|++-.... |..|-|++++..||.+-.+.+..+...+|+
T Consensus 73 lG~r-~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL 146 (870)
T CHL00122 73 LGLR-HFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALT---GKGVHIVTVNDYLAKRDQEWMGQIYRFLGL 146 (870)
T ss_pred hCCC-CCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhc---CCceEEEeCCHHHHHHHHHHHHHHHHHcCC
Confidence 4544 667666554 4435667889999999999999888543222 446899999999999999999999999999
Q ss_pred eEEEEEcCCchHHHHHHhhcCCcEEEeChHHHH-HHHhcc------CccCCCccEEEechhhHhh
Q 022383 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRK------TLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~-~~~~~~------~~~~~~l~~vViDE~h~~~ 188 (298)
.+....++.+..+..... .+||+.+|...|. ++++.+ ....+.+.+.||||+|.++
T Consensus 147 svg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 147 TVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred ceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 999887777665544433 4799999987654 334332 1234678999999999975
No 128
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.19 E-value=8.4e-10 Score=107.78 Aligned_cols=153 Identities=14% Similarity=0.125 Sum_probs=102.5
Q ss_pred CChHHHHHHHHHhh----cCCcEEEEcCCCCchHHHHHHHHHHhhc-cCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 022383 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVD-TSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~li~~pTG~GKT~~~~~~~~~~~~-~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (298)
.+.+||.+.+..+. .|.+.|+.-.+|.|||+..+..+ ..+. .......+|||||. .++.++.+.++++.. .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p--~ 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCP--V 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCC--C
Confidence 68999999998764 57889999999999997643322 2222 11223368999995 667889999998864 4
Q ss_pred ceEEEEEcCCchHHHHH-H--hhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCC
Q 022383 130 IQAHACVGGKSVGEDIR-K--LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~-~--~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~ 206 (298)
+++..++|......... . ....++|+|+|.+.+..... .+.--+.++||+||+|.+-.. .......++.+. .
T Consensus 245 l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~-a 319 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFS-T 319 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHHHhh-c
Confidence 56777777544322211 1 12467999999988765332 222235689999999998443 333444555554 3
Q ss_pred ccEEEEEeeC
Q 022383 207 LQVVLISATL 216 (298)
Q Consensus 207 ~~~v~~SAT~ 216 (298)
...+++|+|+
T Consensus 320 ~~RLLLTGTP 329 (1033)
T PLN03142 320 NYRLLITGTP 329 (1033)
T ss_pred CcEEEEecCC
Confidence 4568899997
No 129
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.18 E-value=1.1e-10 Score=102.67 Aligned_cols=223 Identities=19% Similarity=0.171 Sum_probs=137.6
Q ss_pred CChHHHHHHHHHhh-cC--CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCce
Q 022383 55 KPSAIQQRAVMPII-KG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~-~~--~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 131 (298)
.++|+|...+.... +| ++-+|+.|-|+|||++-..+++. -..++|+||.+.-.+.|+..+++.+....+-.
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t------ikK~clvLcts~VSVeQWkqQfk~wsti~d~~ 375 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT------IKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQ 375 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeee------ecccEEEEecCccCHHHHHHHHHhhcccCccc
Confidence 68999999998876 34 68999999999999764433322 13479999999999999999999987666666
Q ss_pred EEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhcc--------CccCCCccEEEechhhHhhccccHHHHHHHHHhC
Q 022383 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--------TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~--------~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~ 203 (298)
++.+.++... ....++.|+|+|-.++..--++. .+.-+...++++||+|.+...-|+..+.-+-...
T Consensus 376 i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~aHc 450 (776)
T KOG1123|consen 376 ICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQAHC 450 (776)
T ss_pred eEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHHHh
Confidence 7777765443 12356899999976665322211 1223567899999999986555665554443333
Q ss_pred CCCccEEEEEeeCchhHHHHHH-hcCCCCEEEEecCCccC----------------------------cCCceEEEEEec
Q 022383 204 PPDLQVVLISATLPHEILEMTT-KFMTDPVKILVKRDELT----------------------------LEGIKQFFVAVE 254 (298)
Q Consensus 204 ~~~~~~v~~SAT~~~~~~~~~~-~~~~~~~~~~~~~~~~~----------------------------~~~i~~~~~~~~ 254 (298)
.+++|||+-++...... .++-.|..+....-+.. ...-....+.++
T Consensus 451 -----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMN 525 (776)
T KOG1123|consen 451 -----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMN 525 (776)
T ss_pred -----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecC
Confidence 58999998433111111 01111211111100000 000112222222
Q ss_pred CccchHHHHHHHHh--hCCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 255 REEWKFDTLCDLYD--TLTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 255 ~~~~k~~~l~~ll~--~~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
+. |..+-..+++ ...+.|+|||..++-....+|-.|.+-
T Consensus 526 P~--KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~Kp 566 (776)
T KOG1123|consen 526 PN--KFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGKP 566 (776)
T ss_pred cc--hhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCCc
Confidence 22 4555445554 335679999999998888888777543
No 130
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.16 E-value=3.1e-09 Score=96.40 Aligned_cols=228 Identities=15% Similarity=0.160 Sum_probs=142.6
Q ss_pred CCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHH-HHhhccCCce
Q 022383 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI-LAIGDFINIQ 131 (298)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~-~~~~~~~~~~ 131 (298)
.-..+++-.+.+.++..++-++|+|.||||||.-.--.+...-.. ..+.++-+--|+|--|..++.+. +.++..+|-.
T Consensus 263 sLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGyt-k~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e 341 (902)
T KOG0923|consen 263 SLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYT-KGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE 341 (902)
T ss_pred cCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccc-cCCceEeecCcchHHHHHHHHHHHHHhCcccccc
Confidence 334667777888889999999999999999996432223222111 22334556669998888887765 4555555444
Q ss_pred EEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhh--ccccHHHHHHHHHhCCCCccE
Q 022383 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML--SRGFKDQIYDVYRYLPPDLQV 209 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~--~~~~~~~i~~i~~~~~~~~~~ 209 (298)
+++-..- +.+ ..+..-+=+.|.++|++-+.. ..++...++|||||||.=. .+-.-..+..|.+ +++...+
T Consensus 342 VGYsIRF----Edc--TSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar-~RpdLKl 413 (902)
T KOG0923|consen 342 VGYSIRF----EDC--TSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIAR-FRPDLKL 413 (902)
T ss_pred cceEEEe----ccc--cCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHh-hCCcceE
Confidence 4332211 000 012235668999999876554 3567899999999999621 1111222333333 3468899
Q ss_pred EEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHh---hCCCCcEEEEecchhhHH
Q 022383 210 VLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD---TLTITQAVIFCNTKRKIY 286 (298)
Q Consensus 210 v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~---~~~~~k~lIf~~s~~~~~ 286 (298)
++.|||+..+ .+ ..++.+.-.+.++ -....++-+|...+..++-..++..+++ ..+.+-+|||....++.+
T Consensus 414 lIsSAT~DAe--kF-S~fFDdapIF~iP---GRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIE 487 (902)
T KOG0923|consen 414 LISSATMDAE--KF-SAFFDDAPIFRIP---GRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIE 487 (902)
T ss_pred EeeccccCHH--HH-HHhccCCcEEecc---CcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHH
Confidence 9999999742 33 3455443333332 2234567777777776655555555555 345678999999999888
Q ss_pred HHHHHHhhh
Q 022383 287 YSVFYFWIR 295 (298)
Q Consensus 287 ~l~~~L~~~ 295 (298)
...+.|.++
T Consensus 488 t~~e~l~~~ 496 (902)
T KOG0923|consen 488 TVKENLKER 496 (902)
T ss_pred HHHHHHHHH
Confidence 888877654
No 131
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.11 E-value=2.2e-09 Score=101.24 Aligned_cols=137 Identities=16% Similarity=0.150 Sum_probs=96.2
Q ss_pred EEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----h
Q 022383 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----E 149 (298)
Q Consensus 74 li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 149 (298)
+..+.+|||||..|+-.+-..+.. +..+|+++|...|..|+.+.++.... +-.+..++++.+..+....+ .
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 334446999999999888777665 55799999999999999999987642 25688899987776554433 3
Q ss_pred cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhh-cc--ccHHHHHHH--HHhCCCCccEEEEEeeCchhHHH
Q 022383 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML-SR--GFKDQIYDV--YRYLPPDLQVVLISATLPHEILE 222 (298)
Q Consensus 150 ~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~-~~--~~~~~i~~i--~~~~~~~~~~v~~SAT~~~~~~~ 222 (298)
+..+|+|||-..++ ..+.++.+||+||-|.-. .. ..+.+.+.+ .+....+..+|+.|||++-+...
T Consensus 239 G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~ 309 (665)
T PRK14873 239 GQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQA 309 (665)
T ss_pred CCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHH
Confidence 55799999964433 457899999999988532 11 111222222 23333578899999998755443
No 132
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.11 E-value=6.3e-09 Score=98.63 Aligned_cols=130 Identities=19% Similarity=0.233 Sum_probs=95.8
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
.|.. |++.|--.--.+ .+.-+..+.||-|||+++.+|++-.... |..|-|++++..||..=.+.+..+...+|+
T Consensus 82 lG~r-~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~---GkgVhVVTvNdYLA~RDae~m~~vy~~LGL 155 (939)
T PRK12902 82 LGMR-HFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALT---GKGVHVVTVNDYLARRDAEWMGQVHRFLGL 155 (939)
T ss_pred hCCC-cchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhc---CCCeEEEeCCHHHHHhHHHHHHHHHHHhCC
Confidence 3433 666665444333 4556889999999999998888764433 446889999999999999999999999999
Q ss_pred eEEEEEcCCchHHHHHHhhcCCcEEEeChHHHH-HHHhc------cCccCCCccEEEechhhHhh
Q 022383 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKR------KTLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~-~~~~~------~~~~~~~l~~vViDE~h~~~ 188 (298)
.+....++.+..+. ...-.+||+.+|+..|. .+++. .....+.+.+.||||+|.++
T Consensus 156 tvg~i~~~~~~~er--r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 156 SVGLIQQDMSPEER--KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred eEEEECCCCChHHH--HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99988776655433 33346899999998872 22222 22345788999999999875
No 133
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.06 E-value=1.4e-08 Score=95.29 Aligned_cols=152 Identities=12% Similarity=0.128 Sum_probs=99.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh-
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE- 149 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (298)
.-.++.+|.|+|||.+..-++-..+.. ...++++++.++.|+.++.++++..+-. ++. .+.+.... .+.
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~--~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv---~Y~d~~~~----~i~~ 119 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKN--PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFV---NYLDSDDY----IIDG 119 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccC--CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cce---eeeccccc----cccc
Confidence 346788999999998876666555433 2458999999999999999988765211 221 11111110 111
Q ss_pred cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHH-------HHHHHHHhCCCCccEEEEEeeCchhHHH
Q 022383 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKD-------QIYDVYRYLPPDLQVVLISATLPHEILE 222 (298)
Q Consensus 150 ~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~-------~i~~i~~~~~~~~~~v~~SAT~~~~~~~ 222 (298)
...+-+++..+.|.++.. -.+.+.++||+||+-..+..-|.. .+..+...+.....+|++-|+++....+
T Consensus 120 ~~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvd 196 (824)
T PF02399_consen 120 RPYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVD 196 (824)
T ss_pred cccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHH
Confidence 134667777777766543 245678999999998876543322 2222334445678899999999999999
Q ss_pred HHHhcCCC-CEEEE
Q 022383 223 MTTKFMTD-PVKIL 235 (298)
Q Consensus 223 ~~~~~~~~-~~~~~ 235 (298)
++....++ ++.++
T Consensus 197 Fl~~~Rp~~~i~vI 210 (824)
T PF02399_consen 197 FLASCRPDENIHVI 210 (824)
T ss_pred HHHHhCCCCcEEEE
Confidence 99887653 34443
No 134
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.04 E-value=2.7e-08 Score=94.20 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=95.1
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
.|. .|++.|--.--.+..| -+..+.||-|||+++.+|++-.... |..|-|++.+.-||..=.+.+..+...+|+
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~---GkgVhVVTvNdYLA~RDae~mg~vy~fLGL 148 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT---GKGVIVSTVNEYLAERDAEEMGKVFNFLGL 148 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc---CCceEEEecchhhhhhhHHHHHHHHHHhCC
Confidence 344 4777777666555555 4789999999999998887543323 335778889999999989999999999999
Q ss_pred eEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHH-HHhcc------CccCCCccEEEechhhHhh
Q 022383 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRK------TLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~-~~~~~------~~~~~~l~~vViDE~h~~~ 188 (298)
.++....+....+.... -.|||+.+|...|.- +++.+ ....+.+.+.||||+|.++
T Consensus 149 svG~i~~~~~~~~rr~a--Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 149 SVGINKANMDPNLKREA--YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred ceeeeCCCCChHHHHHh--ccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 99888776555443333 348999999877643 44432 1234778899999999875
No 135
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.02 E-value=1.9e-08 Score=84.30 Aligned_cols=130 Identities=20% Similarity=0.324 Sum_probs=95.6
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
.|+ .|++.|.-+.-.+.+|+ +++..||-|||++..+|+.-.... |..|=|++.+..|+..=.+.+..+...+|+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---G~~V~vvT~NdyLA~RD~~~~~~~y~~LGl 147 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---GKGVHVVTSNDYLAKRDAEEMRPFYEFLGL 147 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---SS-EEEEESSHHHHHHHHHHHHHHHHHTT-
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---cCCcEEEeccHHHhhccHHHHHHHHHHhhh
Confidence 454 48888888887776666 999999999999887776555443 457889999999999999999999999999
Q ss_pred eEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHH-HHhcc------CccCCCccEEEechhhHhh
Q 022383 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRK------TLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~-~~~~~------~~~~~~l~~vViDE~h~~~ 188 (298)
.+....++.+..+..... .++|+.+|...+.- +++.+ ....+.++++||||+|.++
T Consensus 148 sv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999887755443333 36899999988764 44432 1124788999999999975
No 136
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.00 E-value=5.8e-09 Score=100.37 Aligned_cols=175 Identities=19% Similarity=0.149 Sum_probs=108.2
Q ss_pred HHHHHCCCCCChHHHHHHHHHhhc------CCc--EEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHH
Q 022383 46 RGIYQYGFEKPSAIQQRAVMPIIK------GRD--VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (298)
Q Consensus 46 ~~l~~~~~~~~~~~Q~~~~~~~~~------~~~--~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 117 (298)
+.|++..-..-..||-.+++.+.. ... ++=.|.||+|||++=+-.+ ..+.....+.+..|..-.|.|-.|+
T Consensus 399 k~~~~r~~~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARIm-yaLsd~~~g~RfsiALGLRTLTLQT 477 (1110)
T TIGR02562 399 KYFCQRSAHPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAM-YALRDDKQGARFAIALGLRSLTLQT 477 (1110)
T ss_pred hhhccCCCCCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHH-HHhCCCCCCceEEEEccccceeccc
Confidence 344443334567799999998763 122 4555999999998855433 3445556677888888899999998
Q ss_pred HHHHHHhhccCCceEEEEEcCCchHHHH-------------------------------------------HHhh-----
Q 022383 118 EKVILAIGDFINIQAHACVGGKSVGEDI-------------------------------------------RKLE----- 149 (298)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~----- 149 (298)
-+.+++.....+-...++.|+....+-. ..+.
T Consensus 478 Gda~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~ 557 (1110)
T TIGR02562 478 GHALKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKE 557 (1110)
T ss_pred hHHHHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhh
Confidence 8888765443333445555442211100 0000
Q ss_pred ---cCCcEEEeChHHHHHHHhc---cCccCC----CccEEEechhhHhhccccHHHHHHHHHhCC-CCccEEEEEeeCch
Q 022383 150 ---HGVHVVSGTPGRVCDMIKR---KTLRTR----AIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLISATLPH 218 (298)
Q Consensus 150 ---~~~~ilV~Tp~~l~~~~~~---~~~~~~----~l~~vViDE~h~~~~~~~~~~i~~i~~~~~-~~~~~v~~SAT~~~ 218 (298)
-..+++|||++.++..... +...+. .=+.|||||+|.+ +......+..+++... ...+++++|||+|+
T Consensus 558 ~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaY-D~~~~~~L~rlL~w~~~lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 558 KTLLAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDY-EPEDLPALLRLVQLAGLLGSRVLLSSATLPP 636 (1110)
T ss_pred hhhhcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccC-CHHHHHHHHHHHHHHHHcCCCEEEEeCCCCH
Confidence 0146999999999887622 122111 2256999999986 3333344445554332 35789999999998
Q ss_pred hHHH
Q 022383 219 EILE 222 (298)
Q Consensus 219 ~~~~ 222 (298)
.+..
T Consensus 637 ~l~~ 640 (1110)
T TIGR02562 637 ALVK 640 (1110)
T ss_pred HHHH
Confidence 7655
No 137
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.99 E-value=7.1e-08 Score=88.12 Aligned_cols=224 Identities=14% Similarity=0.138 Sum_probs=137.4
Q ss_pred CCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHH-HhhccCCce
Q 022383 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL-AIGDFINIQ 131 (298)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~-~~~~~~~~~ 131 (298)
+-....++.+.+..+..++-++|++.||||||.-..-.++..-... ...+-+--|++.-|..++.+.. .++..+|-.
T Consensus 354 ~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~--~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~ 431 (1042)
T KOG0924|consen 354 YLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD--NGMIGCTQPRRVAAISVAKRVAEEMGVTLGDT 431 (1042)
T ss_pred hcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc--CCeeeecCchHHHHHHHHHHHHHHhCCccccc
Confidence 4445667778888888889999999999999976444444432222 2233444599999988887765 454444444
Q ss_pred EEEEE--cCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc-c-cHHHHHHHHHhCCCCc
Q 022383 132 AHACV--GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-G-FKDQIYDVYRYLPPDL 207 (298)
Q Consensus 132 ~~~~~--~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~-~-~~~~i~~i~~~~~~~~ 207 (298)
+++.. .+... ....|=..|.+.|++-.-. .-.+.++++||+||||.=.-. . ..-.+..++.. +.+.
T Consensus 432 VGYsIRFEdvT~--------~~T~IkymTDGiLLrEsL~-d~~L~kYSviImDEAHERslNtDilfGllk~~lar-Rrdl 501 (1042)
T KOG0924|consen 432 VGYSIRFEDVTS--------EDTKIKYMTDGILLRESLK-DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLAR-RRDL 501 (1042)
T ss_pred cceEEEeeecCC--------CceeEEEeccchHHHHHhh-hhhhhheeEEEechhhhcccchHHHHHHHHHHHHh-hccc
Confidence 43322 12111 1235667888888764332 234678999999999973211 1 11222233333 3478
Q ss_pred cEEEEEeeCchhHHHHHHhcCC-CCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhC---CCCcEEEEecchh
Q 022383 208 QVVLISATLPHEILEMTTKFMT-DPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL---TITQAVIFCNTKR 283 (298)
Q Consensus 208 ~~v~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~---~~~k~lIf~~s~~ 283 (298)
++|..|||+.. +.+. .+++ .|...+-.+ ...++..+...+-+++...++.+.+.-+ ..+-.|||....+
T Consensus 502 KliVtSATm~a--~kf~-nfFgn~p~f~IpGR----TyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqe 574 (1042)
T KOG0924|consen 502 KLIVTSATMDA--QKFS-NFFGNCPQFTIPGR----TYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQE 574 (1042)
T ss_pred eEEEeeccccH--HHHH-HHhCCCceeeecCC----ccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCc
Confidence 89999999974 3333 3444 555544322 2335666666665665555566555432 4468999999998
Q ss_pred hHHHHHHHHhhh
Q 022383 284 KIYYSVFYFWIR 295 (298)
Q Consensus 284 ~~~~l~~~L~~~ 295 (298)
+.+..+..+..+
T Consensus 575 diE~t~~~i~~~ 586 (1042)
T KOG0924|consen 575 DIECTCDIIKEK 586 (1042)
T ss_pred chhHHHHHHHHH
Confidence 888777776544
No 138
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.97 E-value=1.5e-08 Score=96.90 Aligned_cols=64 Identities=27% Similarity=0.330 Sum_probs=52.0
Q ss_pred CCCCChHHHHHHHHHhh----c-----CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHH
Q 022383 52 GFEKPSAIQQRAVMPII----K-----GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (298)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~----~-----~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (298)
||+ .++-|.+....+. + ++.+++.||||+|||++|++|++...... +.++||-++|++|-+|+.
T Consensus 23 ~~e-~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~--~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 23 GFI-PRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE--KKKLVISTATVALQEQLV 95 (697)
T ss_pred CCC-cCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHH
Confidence 554 9999999776654 3 36789999999999999999998754433 447999999999999986
No 139
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.86 E-value=1.4e-09 Score=103.07 Aligned_cols=231 Identities=13% Similarity=0.156 Sum_probs=140.5
Q ss_pred CChHHHHHHHHHhhc-CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEE
Q 022383 55 KPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~-~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~ 133 (298)
...|.|.+.+-.+.. ..++++-+|||+|||.+|...++..+...+. .+++++.|.++|+..-.+.+++.....|+++.
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~~~g~k~i 1005 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDELPGIKVI 1005 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhcccCCceeE
Confidence 445556555543332 3678999999999999999999888776554 58999999999999988888766555588899
Q ss_pred EEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc--cCccCCCccEEEechhhHhhccccHHHHHHHHH-------hCC
Q 022383 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR-------YLP 204 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~--~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~-------~~~ 204 (298)
-+.|+...+. ..+ ...+++|+||++.....++ ..-.++++..+|+||.|++.+. +.+.++.+.. ...
T Consensus 1006 e~tgd~~pd~--~~v-~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~-rgPVle~ivsr~n~~s~~t~ 1081 (1230)
T KOG0952|consen 1006 ELTGDVTPDV--KAV-READIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED-RGPVLEVIVSRMNYISSQTE 1081 (1230)
T ss_pred eccCccCCCh--hhe-ecCceEEcccccccCccccccchhhhccccceeecccccccCC-CcceEEEEeeccccCccccC
Confidence 8888876652 222 3469999999999988874 4556789999999999998655 3333322221 122
Q ss_pred CCccEEEEEeeCchhHHHHHHhcCCCCE--E---EEecCCccCcCCceEEEEEecCccchHHHHHHHHhhC-CCCcEEEE
Q 022383 205 PDLQVVLISATLPHEILEMTTKFMTDPV--K---ILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIF 278 (298)
Q Consensus 205 ~~~~~v~~SAT~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~k~lIf 278 (298)
+..+.+++|.-+.+. .++..+....+. . +.-.+.+....+..- ...|++...+-.-..+.++.+ +..+++||
T Consensus 1082 ~~vr~~glsta~~na-~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~-~~~cprm~smnkpa~qaik~~sp~~p~lif 1159 (1230)
T KOG0952|consen 1082 EPVRYLGLSTALANA-NDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPG-QHYCPRMMSMNKPAFQAIKTHSPIKPVLIF 1159 (1230)
T ss_pred cchhhhhHhhhhhcc-HHHHHHhCCCCcCCCCcccccCCceEeecCCCc-hhcchhhhhcccHHHHHHhcCCCCCceEEE
Confidence 346666665544322 222222222222 0 000000000001111 112232221222334444544 45699999
Q ss_pred ecchhhHHHHHHHH
Q 022383 279 CNTKRKIYYSVFYF 292 (298)
Q Consensus 279 ~~s~~~~~~l~~~L 292 (298)
+.++.....-+..|
T Consensus 1160 v~srrqtrlta~~l 1173 (1230)
T KOG0952|consen 1160 VSSRRQTRLTALDL 1173 (1230)
T ss_pred eecccccccchHhH
Confidence 99988665555444
No 140
>COG4889 Predicted helicase [General function prediction only]
Probab=98.85 E-value=2.8e-09 Score=99.44 Aligned_cols=140 Identities=21% Similarity=0.201 Sum_probs=92.4
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHhhcC----CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHH
Q 022383 43 DLLRGIYQYGFEKPSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (298)
Q Consensus 43 ~i~~~l~~~~~~~~~~~Q~~~~~~~~~~----~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (298)
++..++.-..-..|+|+|+.+++...+| ..-=+.+..|+|||+..+-.+ +.+.. .++|+|+|+.+|..|..
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkis-Eala~----~~iL~LvPSIsLLsQTl 223 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKIS-EALAA----ARILFLVPSISLLSQTL 223 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHH-HHHhh----hheEeecchHHHHHHHH
Confidence 4444444455578999999999998765 112334457999998876433 33322 48999999999999988
Q ss_pred HHHHHhhccCCceEEEEEcCCchHHHH--------------------HH-----hhcCCcEEEeChHHHHHHHhccCccC
Q 022383 119 KVILAIGDFINIQAHACVGGKSVGEDI--------------------RK-----LEHGVHVVSGTPGRVCDMIKRKTLRT 173 (298)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~-----~~~~~~ilV~Tp~~l~~~~~~~~~~~ 173 (298)
+.+..-. ...++.....++...+... .. -..+--|+++|-+.+...-.-+..-+
T Consensus 224 rew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~ 302 (1518)
T COG4889 224 REWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGL 302 (1518)
T ss_pred HHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCC
Confidence 8765422 2344444444332221110 00 11234588899988888776666778
Q ss_pred CCccEEEechhhHhh
Q 022383 174 RAIKLLVLDESDEML 188 (298)
Q Consensus 174 ~~l~~vViDE~h~~~ 188 (298)
..+++||.||||+..
T Consensus 303 ~~fDliicDEAHRTt 317 (1518)
T COG4889 303 DEFDLIICDEAHRTT 317 (1518)
T ss_pred CCccEEEecchhccc
Confidence 899999999999964
No 141
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.81 E-value=7.4e-08 Score=79.99 Aligned_cols=69 Identities=22% Similarity=0.346 Sum_probs=50.4
Q ss_pred CChHHHHHHHHHhhcCCc-EEEEcCCCCchHHHHHHHHHHhh-----ccCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 022383 55 KPSAIQQRAVMPIIKGRD-VIAQAQSGTGKTSMIALTVCQTV-----DTSSREVQALILSPTRELATQTEKVILA 123 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~-~li~~pTG~GKT~~~~~~~~~~~-----~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (298)
++++.|.+++..+++... .+|.||.|+|||....-.+...+ .....+.++++++|+..-++++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 368899999999999988 99999999999955443333321 1234566899999999999999998877
No 142
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.80 E-value=3.7e-08 Score=94.36 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=59.5
Q ss_pred HHCCCCCChHHHHHHHHHhh----cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 022383 49 YQYGFEKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (298)
Q Consensus 49 ~~~~~~~~~~~Q~~~~~~~~----~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (298)
..+....+++.|.+++..+. +++.+++.||||+|||++|+.|++...... +.+++|.++|+.+-+|+.+....
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~--~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE--GKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc--CCcEEEECCCHHHHHHHHHhhcc
Confidence 33455669999999986654 456799999999999999999999986654 35899999999999998876644
No 143
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.79 E-value=7.1e-08 Score=93.07 Aligned_cols=143 Identities=15% Similarity=0.254 Sum_probs=87.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHH-hh--------ccCCceEEEEEcCC--
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IG--------DFINIQAHACVGGK-- 139 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~-~~--------~~~~~~~~~~~~~~-- 139 (298)
.++.+.++||+|||.+|+-.++...... ...+.||+||+.+....+...++. .. ....++...+.++.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~-~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~ 138 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKY-GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKK 138 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccc
Confidence 4799999999999999998887765443 234799999999999888876651 11 11124444444432
Q ss_pred -----chHHHHHHhh-------cCCcEEEeChHHHHHHHh--cc-------Cc--cC----CCccEEEechhhHhhcccc
Q 022383 140 -----SVGEDIRKLE-------HGVHVVSGTPGRVCDMIK--RK-------TL--RT----RAIKLLVLDESDEMLSRGF 192 (298)
Q Consensus 140 -----~~~~~~~~~~-------~~~~ilV~Tp~~l~~~~~--~~-------~~--~~----~~l~~vViDE~h~~~~~~~ 192 (298)
.....+.... +...|+|.|.+.|..-.. .. .. .+ ..=-.||+||.|++-..
T Consensus 139 k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~-- 216 (986)
T PRK15483 139 KSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD-- 216 (986)
T ss_pred ccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc--
Confidence 1122222221 146899999998875221 10 00 11 11135999999998442
Q ss_pred HHHHHHHHHhCCCCccEEEEEeeCch
Q 022383 193 KDQIYDVYRYLPPDLQVVLISATLPH 218 (298)
Q Consensus 193 ~~~i~~i~~~~~~~~~~v~~SAT~~~ 218 (298)
...+..+ ..+.+.. ++.+|||.+.
T Consensus 217 ~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 2344444 4443322 5679999976
No 144
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.78 E-value=8.7e-08 Score=94.36 Aligned_cols=137 Identities=16% Similarity=0.180 Sum_probs=92.9
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhc
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (298)
+..+|+--||||||+.....+-..+.. ...+.++||+-++.|-.|+.+.+..+........ ...+..+....+.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~ 348 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLED 348 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhc
Confidence 568999999999998866554333333 6678999999999999999999998865432211 23333444444553
Q ss_pred C-CcEEEeChHHHHHHHhcc-C-ccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeC
Q 022383 151 G-VHVVSGTPGRVCDMIKRK-T-LRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (298)
Q Consensus 151 ~-~~ilV~Tp~~l~~~~~~~-~-~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~ 216 (298)
+ -.|+|+|.++|....... . ..-++==+||+||||+- .++..-..+...++ +...++||.|+
T Consensus 349 ~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS---Q~G~~~~~~~~~~~-~a~~~gFTGTP 413 (962)
T COG0610 349 GKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS---QYGELAKLLKKALK-KAIFIGFTGTP 413 (962)
T ss_pred CCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc---cccHHHHHHHHHhc-cceEEEeeCCc
Confidence 3 389999999999888664 1 11223336889999983 22333333333343 47899999998
No 145
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.75 E-value=1.7e-06 Score=77.40 Aligned_cols=67 Identities=22% Similarity=0.279 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHhhcC-----CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 022383 56 PSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~~-----~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~ 128 (298)
|.--|-+||..+..| +.-.+.|.||||||+...-.+ ..+ +.-+||++|.+.||.|++..++.+....
T Consensus 13 PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI-~~~-----~rPtLV~AhNKTLAaQLy~Efk~fFP~N 84 (663)
T COG0556 13 PAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVI-AKV-----QRPTLVLAHNKTLAAQLYSEFKEFFPEN 84 (663)
T ss_pred CCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHH-HHh-----CCCeEEEecchhHHHHHHHHHHHhCcCc
Confidence 666788888776644 578899999999998755433 222 2258999999999999999999987543
No 146
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=98.74 E-value=2.8e-07 Score=85.31 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=105.3
Q ss_pred CChHHHHHHHHHhh----cCCcEEEEcCCCCchHHHHHHHHHHhhc--cCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 022383 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVD--TSSREVQALILSPTRELATQTEKVILAIGDFI 128 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~li~~pTG~GKT~~~~~~~~~~~~--~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~ 128 (298)
.++++|.+.++.+. .|-+.|+.-..|-|||+-. ++.+..+. .+-.|| -+|+||...| ..+.+.++++..
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~GP-fLVi~P~StL-~NW~~Ef~rf~P-- 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPGP-FLVIAPKSTL-DNWMNEFKRFTP-- 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCCC-eEEEeeHhhH-HHHHHHHHHhCC--
Confidence 68999999887754 5778999999999999542 22222222 222343 6889997765 556777888864
Q ss_pred CceEEEEEcCCchHHHH-HHh--hcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCC
Q 022383 129 NIQAHACVGGKSVGEDI-RKL--EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (298)
Q Consensus 129 ~~~~~~~~~~~~~~~~~-~~~--~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~ 205 (298)
++++..++|+....... +.+ ....+|+|+|-+....-- ..+.--..+++||||+|++-.. ...+..+++.+..
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk--~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~f~~ 317 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDK--SFLKKFNWRYLVIDEAHRIKNE--KSKLSKILREFKT 317 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhH--HHHhcCCceEEEechhhhhcch--hhHHHHHHHHhcc
Confidence 58899999986544332 222 246899999998877531 1222335689999999998444 4555577777764
Q ss_pred CccEEEEEeeC-chhHHH
Q 022383 206 DLQVVLISATL-PHEILE 222 (298)
Q Consensus 206 ~~~~v~~SAT~-~~~~~~ 222 (298)
.. .+++|.|+ .+.+.+
T Consensus 318 ~n-rLLlTGTPLQNNL~E 334 (971)
T KOG0385|consen 318 DN-RLLLTGTPLQNNLHE 334 (971)
T ss_pred cc-eeEeeCCcccccHHH
Confidence 33 56777776 444443
No 147
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.66 E-value=1.2e-07 Score=87.86 Aligned_cols=162 Identities=14% Similarity=0.151 Sum_probs=100.9
Q ss_pred ChHHHHHHHHHhh----cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCce
Q 022383 56 PSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (298)
Q Consensus 56 ~~~~Q~~~~~~~~----~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 131 (298)
+.+||.-.++.+. .+-+.|+.-..|-|||.- .++-+..+...+....-|||||...| +.+.+.+.+++. .++
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCP--sl~ 475 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCP--SLK 475 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCC--ceE
Confidence 8899998887653 455778999999999932 22222322222222346889998765 456666777754 578
Q ss_pred EEEEEcCCchHHHHHHhh----cCCcEEEeChHHHHHHHhc-cCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCC
Q 022383 132 AHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~~~~~~-~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~ 206 (298)
+..++|......+..... .+++|+|+|-..+..--.. .-+.-.+++++|+||+|.+-... ...+..+..-- .
T Consensus 476 Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM~I~--A 552 (941)
T KOG0389|consen 476 VEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLMSIN--A 552 (941)
T ss_pred EEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhcccc--c
Confidence 888999887666554332 3689999997555421111 11233577899999999875442 33333333222 3
Q ss_pred ccEEEEEeeC-chhHHHHH
Q 022383 207 LQVVLISATL-PHEILEMT 224 (298)
Q Consensus 207 ~~~v~~SAT~-~~~~~~~~ 224 (298)
.+.+++|.|+ .+.+.+++
T Consensus 553 n~RlLLTGTPLQNNL~ELi 571 (941)
T KOG0389|consen 553 NFRLLLTGTPLQNNLKELI 571 (941)
T ss_pred cceEEeeCCcccccHHHHH
Confidence 4567888886 55444443
No 148
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=98.65 E-value=9.2e-07 Score=83.46 Aligned_cols=164 Identities=16% Similarity=0.120 Sum_probs=106.6
Q ss_pred CChHHHHHHHHHhhc---C-------CcEEEEcCCCCchHHHHHHHHHHhhccCCC----CeEEEEEcCcHHHHHHHHHH
Q 022383 55 KPSAIQQRAVMPIIK---G-------RDVIAQAQSGTGKTSMIALTVCQTVDTSSR----EVQALILSPTRELATQTEKV 120 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~---~-------~~~li~~pTG~GKT~~~~~~~~~~~~~~~~----~~~~lil~p~~~l~~q~~~~ 120 (298)
.++|+|++.+..+.+ | ...++.=..|+|||+-...-+-..+...+. -.++|||+| ..|+..+.+.
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc-HHHHHHHHHH
Confidence 589999999987652 2 246777779999997643333333333222 147899999 5789999999
Q ss_pred HHHhhccCCceEEEEEcCCchH-HHHHHhh------cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccH
Q 022383 121 ILAIGDFINIQAHACVGGKSVG-EDIRKLE------HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 193 (298)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~ 193 (298)
|.++.....+....+++..... .....+. ....+++.+-+.+.+..+. +....++++|+||.|..- +-.
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlk--N~~ 392 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLK--NSD 392 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCcc--chh
Confidence 9998765567777777766541 0011111 1235677777777655443 445688999999999863 334
Q ss_pred HHHHHHHHhCCCCccEEEEEeeC-chhHHHHH
Q 022383 194 DQIYDVYRYLPPDLQVVLISATL-PHEILEMT 224 (298)
Q Consensus 194 ~~i~~i~~~~~~~~~~v~~SAT~-~~~~~~~~ 224 (298)
..+...+..+. -.+.|++|.|+ .+.+.++.
T Consensus 393 s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyF 423 (776)
T KOG0390|consen 393 SLTLKALSSLK-TPRRVLLTGTPIQNDLKEYF 423 (776)
T ss_pred hHHHHHHHhcC-CCceEEeeCCcccccHHHHH
Confidence 55556666665 45578889997 55555543
No 149
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=98.63 E-value=6.7e-06 Score=72.98 Aligned_cols=152 Identities=15% Similarity=0.129 Sum_probs=94.6
Q ss_pred CCCChHHHHHHHHHh-hcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCce
Q 022383 53 FEKPSAIQQRAVMPI-IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (298)
Q Consensus 53 ~~~~~~~Q~~~~~~~-~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 131 (298)
++.+.|+|.+.+... .+|..+++.-..|-|||.-++-.+ ..... ..-.+|+||.. +--.+.+.+.++..... .
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA-~yyra---EwplliVcPAs-vrftWa~al~r~lps~~-p 269 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIA-RYYRA---EWPLLIVCPAS-VRFTWAKALNRFLPSIH-P 269 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHH-HHHhh---cCcEEEEecHH-HhHHHHHHHHHhccccc-c
Confidence 456789999998875 467788888999999997654221 22222 22478899953 44566777777654332 2
Q ss_pred EEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEE
Q 022383 132 AHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVL 211 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~ 211 (298)
+.+..++.+... .+.....|.|.+.+.+..+-.. +.-....+||+||.|++-+. -....+.+...+..-.++|+
T Consensus 270 i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk~akhvIL 343 (689)
T KOG1000|consen 270 IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLKVAKHVIL 343 (689)
T ss_pred eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhcc-chhhhhhhhhHHHHhhheEE
Confidence 444444433221 1222346888888776643321 22345789999999997433 33445555555555567899
Q ss_pred EEeeC
Q 022383 212 ISATL 216 (298)
Q Consensus 212 ~SAT~ 216 (298)
+|.|+
T Consensus 344 LSGTP 348 (689)
T KOG1000|consen 344 LSGTP 348 (689)
T ss_pred ecCCc
Confidence 99986
No 150
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.63 E-value=4.2e-07 Score=81.69 Aligned_cols=248 Identities=10% Similarity=-0.017 Sum_probs=153.2
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 022383 44 LLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (298)
Q Consensus 44 i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (298)
+...+.++..+....+|.++++.+-.|+++++...|.+||.++|.......+...+. ...+++.|++++++...+-+..
T Consensus 275 ~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~V 353 (1034)
T KOG4150|consen 275 IRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHA-TNSLLPSEMVEHLRNGSKGQVV 353 (1034)
T ss_pred HHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcc-cceecchhHHHHhhccCCceEE
Confidence 334445566678899999999999999999999999999999998888776554333 3578899999998876553321
Q ss_pred hhccC-Cc--eEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCc----cCCCccEEEechhhHhhccc---cH
Q 022383 124 IGDFI-NI--QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL----RTRAIKLLVLDESDEMLSRG---FK 193 (298)
Q Consensus 124 ~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~----~~~~l~~vViDE~h~~~~~~---~~ 193 (298)
..... .. -++-.+.+........-+..+.+++.+.|..+.....-+.. .+-+..++++||+|.+.-.- -.
T Consensus 354 ~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~ 433 (1034)
T KOG4150|consen 354 HVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQ 433 (1034)
T ss_pred EEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHH
Confidence 11110 11 12233444444444445556789999999988875543322 23455779999999864331 23
Q ss_pred HHHHHHHHhC-----CCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCcc--------chH
Q 022383 194 DQIYDVYRYL-----PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREE--------WKF 260 (298)
Q Consensus 194 ~~i~~i~~~~-----~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------~k~ 260 (298)
..++.+.+.. +.+.|++-.+||+.....-....+..+-..+.. .+-.+.+-.+.++..++-. .+.
T Consensus 434 ~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~--~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i 511 (1034)
T KOG4150|consen 434 DQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVT--IDGSPSSEKLFVLWNPSAPPTSKSEKSSKV 511 (1034)
T ss_pred HHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEE--ecCCCCccceEEEeCCCCCCcchhhhhhHH
Confidence 4444444443 257899999999977655444333222222222 2233334445555443211 122
Q ss_pred HHHHHHHhh--CCCCcEEEEecchhhHHHHHHHHhh
Q 022383 261 DTLCDLYDT--LTITQAVIFCNTKRKIYYSVFYFWI 294 (298)
Q Consensus 261 ~~l~~ll~~--~~~~k~lIf~~s~~~~~~l~~~L~~ 294 (298)
.....++.+ ..+-++|-||.+++-|+.+-..-++
T Consensus 512 ~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~ 547 (1034)
T KOG4150|consen 512 VEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTRE 547 (1034)
T ss_pred HHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHH
Confidence 223333322 2335999999999999988665543
No 151
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.61 E-value=3.8e-07 Score=73.50 Aligned_cols=150 Identities=12% Similarity=0.170 Sum_probs=72.4
Q ss_pred CCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHH----HHHHhhccC
Q 022383 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK----VILAIGDFI 128 (298)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~----~~~~~~~~~ 128 (298)
+...+..|..++.++.+.+-+++.||.|+|||+.++-.+++.+.. ....+++|+-|..+..+++-- .-+++..+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~-g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKE-GEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHT-TS-SEEEEEE-S--TT----SS---------TTT
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCcEEEEEecCCCCccccccCCCCHHHHHHHHH
Confidence 345688999999999988899999999999999998888888876 344477888787754222110 000000000
Q ss_pred CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCcc
Q 022383 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (298)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~ 208 (298)
. .+.-.....-.......+.....|-+..+ .+++.. .++ -.+||+|||..+ -...+..++.++..+.+
T Consensus 81 ~-p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~----~~iRGr--t~~-~~~iIvDEaQN~----t~~~~k~ilTR~g~~sk 148 (205)
T PF02562_consen 81 R-PIYDALEELFGKEKLEELIQNGKIEIEPL----AFIRGR--TFD-NAFIIVDEAQNL----TPEELKMILTRIGEGSK 148 (205)
T ss_dssp H-HHHHHHTTTS-TTCHHHHHHTTSEEEEEG----GGGTT----B--SEEEEE-SGGG------HHHHHHHHTTB-TT-E
T ss_pred H-HHHHHHHHHhChHhHHHHhhcCeEEEEeh----hhhcCc--ccc-ceEEEEecccCC----CHHHHHHHHcccCCCcE
Confidence 0 00000000000001111112223333333 222222 222 289999999865 35678888999988888
Q ss_pred EEEEEee
Q 022383 209 VVLISAT 215 (298)
Q Consensus 209 ~v~~SAT 215 (298)
++++--.
T Consensus 149 ii~~GD~ 155 (205)
T PF02562_consen 149 IIITGDP 155 (205)
T ss_dssp EEEEE--
T ss_pred EEEecCc
Confidence 8876544
No 152
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.57 E-value=9.3e-06 Score=72.65 Aligned_cols=196 Identities=17% Similarity=0.226 Sum_probs=120.5
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccC-Cc----eEEEEEc--------------CCchHHHHHHhh-----------
Q 022383 100 REVQALILSPTRELATQTEKVILAIGDFI-NI----QAHACVG--------------GKSVGEDIRKLE----------- 149 (298)
Q Consensus 100 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~-~~----~~~~~~~--------------~~~~~~~~~~~~----------- 149 (298)
..|+||||+|++..|-++.+.+-++.... .+ +...-+| ......+...+.
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 35799999999999999998887765431 00 0000000 000011111111
Q ss_pred --------------cCCcEEEeChHHHHHHHhc------cCccCCCccEEEechhhHhhccccHHHHHHHHHhC---CC-
Q 022383 150 --------------HGVHVVSGTPGRVCDMIKR------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL---PP- 205 (298)
Q Consensus 150 --------------~~~~ilV~Tp~~l~~~~~~------~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~---~~- 205 (298)
..+||||++|=-|...+.. ..-.++.+.++|+|.+|.+.-. ..+++..+++.+ |+
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQ-NW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQ-NWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHh-hHHHHHHHHHHhccCCCC
Confidence 1378999999888887764 1223689999999999997532 234444554444 32
Q ss_pred --------------------CccEEEEEeeCchhHHHHHHhcCCCCE-EEEecC--C-----ccCcCCceEEEEEecCcc
Q 022383 206 --------------------DLQVVLISATLPHEILEMTTKFMTDPV-KILVKR--D-----ELTLEGIKQFFVAVEREE 257 (298)
Q Consensus 206 --------------------~~~~v~~SAT~~~~~~~~~~~~~~~~~-~~~~~~--~-----~~~~~~i~~~~~~~~~~~ 257 (298)
-+|.|++|+...+.+..+....+.+.. .+.... . .....++.|.+...+...
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 369999999999999998887555432 222211 1 133456777777655432
Q ss_pred ------chHHHHHH-H---Hh-hCCCCcEEEEecchhhHHHHHHHHhhhc
Q 022383 258 ------WKFDTLCD-L---YD-TLTITQAVIFCNTKRKIYYSVFYFWIRW 296 (298)
Q Consensus 258 ------~k~~~l~~-l---l~-~~~~~k~lIf~~s~~~~~~l~~~L~~~~ 296 (298)
.+.+.... + +. ....+.+|||++|--+=-.+.++|+...
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~ 324 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKEN 324 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcC
Confidence 12222221 1 22 3445699999999998888888887654
No 153
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.55 E-value=5.7e-07 Score=72.75 Aligned_cols=123 Identities=20% Similarity=0.273 Sum_probs=72.2
Q ss_pred CChHHHHHHHHHhhcC--CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceE
Q 022383 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 132 (298)
.+++-|.+++..++.. +-.+++||.|+|||.+ +..+...+... +.++++++||...+..+.+.. +...
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~-------~~~a 70 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA--GKRVIGLAPTNKAAKELREKT-------GIEA 70 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT--T--EEEEESSHHHHHHHHHHH-------TS-E
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC--CCeEEEECCcHHHHHHHHHhh-------Ccch
Confidence 3788999999998643 3577889999999965 33344555443 468999999999888866642 1111
Q ss_pred EEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccC----ccCCCccEEEechhhHhhccccHHHHHHHHHhCCC-Cc
Q 022383 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT----LRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DL 207 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~----~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~-~~ 207 (298)
.|-.+++....... ..+...++|||||+-++. ...+..+++..+. ..
T Consensus 71 ------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~~~ 122 (196)
T PF13604_consen 71 ------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKSGA 122 (196)
T ss_dssp ------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-T-
T ss_pred ------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhcCC
Confidence 11111111111100 114566899999998763 3456667777765 66
Q ss_pred cEEEEEee
Q 022383 208 QVVLISAT 215 (298)
Q Consensus 208 ~~v~~SAT 215 (298)
++|++--+
T Consensus 123 klilvGD~ 130 (196)
T PF13604_consen 123 KLILVGDP 130 (196)
T ss_dssp EEEEEE-T
T ss_pred EEEEECCc
Confidence 77776554
No 154
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.54 E-value=1.3e-06 Score=81.24 Aligned_cols=159 Identities=16% Similarity=0.118 Sum_probs=101.8
Q ss_pred CChHHHHHHHHHhh----cCCcEEEEcCCCCchHH---HHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 022383 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTS---MIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~li~~pTG~GKT~---~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (298)
.+.++|++.+..+. ++..-|+--.+|-|||. +|+-.+.+. . .....+|||||. .++.|+...+..+..
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S-~--k~~~paLIVCP~-Tii~qW~~E~~~w~p- 279 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHS-G--KLTKPALIVCPA-TIIHQWMKEFQTWWP- 279 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhc-c--cccCceEEEccH-HHHHHHHHHHHHhCc-
Confidence 57899999877654 56778888899999993 333333322 1 223479999994 678999999999854
Q ss_pred CCceEEEEEcCCchH--------HHHHH-----hhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHH
Q 022383 128 INIQAHACVGGKSVG--------EDIRK-----LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKD 194 (298)
Q Consensus 128 ~~~~~~~~~~~~~~~--------~~~~~-----~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~ 194 (298)
.+++..+++..+.. ..... ...+..|+|+|-+.+--. ...+.-...+++|+||.|.+-.+. .
T Consensus 280 -~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpn--s 354 (923)
T KOG0387|consen 280 -PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPN--S 354 (923)
T ss_pred -ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCc--c
Confidence 46777777754420 11111 123456899997555321 122333566899999999985553 4
Q ss_pred HHHHHHHhCCCCccEEEEEeeC-chhHHHHH
Q 022383 195 QIYDVYRYLPPDLQVVLISATL-PHEILEMT 224 (298)
Q Consensus 195 ~i~~i~~~~~~~~~~v~~SAT~-~~~~~~~~ 224 (298)
.+...+..++ ..+.+++|.|+ .+.+.++.
T Consensus 355 ~islackki~-T~~RiILSGTPiQNnL~ELw 384 (923)
T KOG0387|consen 355 KISLACKKIR-TVHRIILSGTPIQNNLTELW 384 (923)
T ss_pred HHHHHHHhcc-ccceEEeeCccccchHHHHH
Confidence 4445556665 45677778886 45444443
No 155
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.36 E-value=8.9e-06 Score=66.27 Aligned_cols=128 Identities=20% Similarity=0.279 Sum_probs=83.0
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhc---CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCc
Q 022383 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIK---GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (298)
Q Consensus 34 ~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~---~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (298)
+|+-...+.++.-.+.. ++. +++.|.++...+.+ |+|.+.+.-+|.|||.+.+ |++..+.++.. .-+.+++|
T Consensus 4 ~w~p~~~P~wLl~E~e~-~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~-Pmla~~LAdg~-~LvrviVp- 78 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-NIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIV-PMLALALADGS-RLVRVIVP- 78 (229)
T ss_pred CCCchhChHHHHHHHHc-Cce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHH-HHHHHHHcCCC-cEEEEEcC-
Confidence 56666667777777654 454 89999999888764 6899999999999997754 55555444322 25666666
Q ss_pred HHHHHHHHHHHHH-hhccCCceEEE--EEcCCchHH-H---HH----HhhcCCcEEEeChHHHHHHH
Q 022383 111 RELATQTEKVILA-IGDFINIQAHA--CVGGKSVGE-D---IR----KLEHGVHVVSGTPGRVCDMI 166 (298)
Q Consensus 111 ~~l~~q~~~~~~~-~~~~~~~~~~~--~~~~~~~~~-~---~~----~~~~~~~ilV~Tp~~l~~~~ 166 (298)
++|..|....++. ++.-.+-++.. +..+..... . .. .....-.|+++||+.+.++-
T Consensus 79 k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 79 KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 5799999988864 44333444433 333333221 1 11 12234479999999988753
No 156
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=98.32 E-value=4.3e-06 Score=74.03 Aligned_cols=108 Identities=13% Similarity=0.185 Sum_probs=67.1
Q ss_pred cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcC
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (298)
-++|.|..|+|||+..+-.+ ..+.....+..++++++..+|...+...+...... ..
T Consensus 3 v~~I~G~aGTGKTvla~~l~-~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------------------~~ 59 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLA-KELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP----------------------KL 59 (352)
T ss_pred EEEEEecCCcCHHHHHHHHH-HHhhccccCCceEEEEecchHHHHHHHHHhhhccc----------------------ch
Confidence 47889999999997654333 33322334568999999999999888877653200 00
Q ss_pred CcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc-------cHHHHHHHHHh
Q 022383 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-------FKDQIYDVYRY 202 (298)
Q Consensus 152 ~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~-------~~~~i~~i~~~ 202 (298)
....+..+..+..............++|||||||.+...+ ....+..+++.
T Consensus 60 ~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 60 KKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred hhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 1122233333333222223456788999999999997732 23556666665
No 157
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.31 E-value=8e-06 Score=72.50 Aligned_cols=168 Identities=19% Similarity=0.220 Sum_probs=103.2
Q ss_pred CChHHHHHHHHHhhcC-----CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 022383 55 KPSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~-----~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (298)
.+-|+|.+.+..+... ..-++.-..|+|||.-.+-.++..+. +...|+++|+.+| .|+.+.+..... ..
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~----ra~tLVvaP~VAl-mQW~nEI~~~T~-gs 257 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD----RAPTLVVAPTVAL-MQWKNEIERHTS-GS 257 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc----cCCeeEEccHHHH-HHHHHHHHHhcc-Cc
Confidence 5789999988765533 34567778999999765544555433 3358999999996 577888877766 35
Q ss_pred ceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhcc--Cc-----------cCCCccE--EEechhhHhhccccHH
Q 022383 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TL-----------RTRAIKL--LVLDESDEMLSRGFKD 194 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~--~~-----------~~~~l~~--vViDE~h~~~~~~~~~ 194 (298)
+++..++|.... ...+.+ .++|++++|-..+.+..+.+ ++ .+..+++ ||+||||.+-+.. ..
T Consensus 258 lkv~~YhG~~R~-~nikel-~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~-sn 334 (791)
T KOG1002|consen 258 LKVYIYHGAKRD-KNIKEL-MNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQ-SN 334 (791)
T ss_pred eEEEEEeccccc-CCHHHh-hcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccccc-cc
Confidence 677777775332 233333 35799999998888877652 11 1234444 9999999985442 11
Q ss_pred HHHHHHHhCCCCccEEEEEeeC-chh---HHHHHHhcCCCCEE
Q 022383 195 QIYDVYRYLPPDLQVVLISATL-PHE---ILEMTTKFMTDPVK 233 (298)
Q Consensus 195 ~i~~i~~~~~~~~~~v~~SAT~-~~~---~~~~~~~~~~~~~~ 233 (298)
.-+.+...- ......+|.|+ .+. +-.+++.+.-+|..
T Consensus 335 TArAV~~L~--tt~rw~LSGTPLQNrigElySLiRFL~i~Pfs 375 (791)
T KOG1002|consen 335 TARAVFALE--TTYRWCLSGTPLQNRIGELYSLIRFLNINPFS 375 (791)
T ss_pred HHHHHHhhH--hhhhhhccCCcchhhHHHHHHHHHHHccCcch
Confidence 122222111 23356778876 333 33344433345543
No 158
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.31 E-value=3.3e-06 Score=81.51 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=63.2
Q ss_pred CCCCCChHHHHHHHHHh----hcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 022383 51 YGFEKPSAIQQRAVMPI----IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~----~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (298)
+-|..++|.|.+....+ ..|++.++.+|||+|||++.+.+++......+..++++|.+.|..=..|+.+.+++..
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhhh
Confidence 35676799999887664 4789999999999999999999999977654445689999999999999999998853
No 159
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.31 E-value=2.6e-06 Score=77.95 Aligned_cols=76 Identities=22% Similarity=0.190 Sum_probs=63.2
Q ss_pred HHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 47 GIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
.+...++..++.-|..|+.+++.+.-.+|+||.|+|||.+..-.+++.+.. ....+|+.+|+..-++|+++.+.+-
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHHHHHhc
Confidence 445567788999999999999999999999999999998766656555544 2447999999999999999988764
No 160
>PRK10536 hypothetical protein; Provisional
Probab=98.31 E-value=2.4e-05 Score=65.07 Aligned_cols=143 Identities=13% Similarity=0.140 Sum_probs=81.6
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHH-------HHHHH--
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ-------TEKVI-- 121 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q-------~~~~~-- 121 (298)
.++...+..|...+..+.++..+++.||+|+|||+......++.+... .-.++++.=|..+..+. ..+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p 133 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADEDLGFLPGDIAEKFAP 133 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCchhhhCcCCCCHHHHHHH
Confidence 456678899999999999888999999999999988777677665442 23345555566543221 11111
Q ss_pred --HHhhccCCceEEEEEcCCchHHHHHHh-h-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHH
Q 022383 122 --LAIGDFINIQAHACVGGKSVGEDIRKL-E-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (298)
Q Consensus 122 --~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~ 197 (298)
+.+...+.. +.+. .....+ . +.-.|-|... .+++...+ .-++||+||++.+. ...+.
T Consensus 134 ~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l----~ymRGrtl---~~~~vIvDEaqn~~----~~~~k 194 (262)
T PRK10536 134 YFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPF----AYMRGRTF---ENAVVILDEAQNVT----AAQMK 194 (262)
T ss_pred HHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecH----HHhcCCcc---cCCEEEEechhcCC----HHHHH
Confidence 111111100 0010 011111 0 1112333322 33343333 33899999998762 36777
Q ss_pred HHHHhCCCCccEEEEE
Q 022383 198 DVYRYLPPDLQVVLIS 213 (298)
Q Consensus 198 ~i~~~~~~~~~~v~~S 213 (298)
.++..++.+.++|++-
T Consensus 195 ~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 195 MFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHhhcCCCCEEEEeC
Confidence 8888888888777653
No 161
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=2.3e-05 Score=70.16 Aligned_cols=177 Identities=16% Similarity=0.194 Sum_probs=113.4
Q ss_pred CCCChHHHHHHHHHhhcCCcEEEEcCC-CCch--HHHHHHHHHHhhccC----------------------------CCC
Q 022383 53 FEKPSAIQQRAVMPIIKGRDVIAQAQS-GTGK--TSMIALTVCQTVDTS----------------------------SRE 101 (298)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~li~~pT-G~GK--T~~~~~~~~~~~~~~----------------------------~~~ 101 (298)
-..+++.|.+.+....+.+|++....| +.|+ +-.|++.+++++.+. -..
T Consensus 214 s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 214 SEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred cCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 357999999999999999998765332 3344 466888888876211 123
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhccCCc---------eE-EEE---------------------EcCCchHHH------
Q 022383 102 VQALILSPTRELATQTEKVILAIGDFINI---------QA-HAC---------------------VGGKSVGED------ 144 (298)
Q Consensus 102 ~~~lil~p~~~l~~q~~~~~~~~~~~~~~---------~~-~~~---------------------~~~~~~~~~------ 144 (298)
|+|||+||+++-|-.+.+.+..+..+.+- +. .-+ .|.++..-.
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 78999999999999999999877432211 00 001 111110000
Q ss_pred ---H--HHhhcCCcEEEeChHHHHHHHhcc-----Cc-cCCCccEEEechhhHhhccccHHHHHHHHHhCC---C-----
Q 022383 145 ---I--RKLEHGVHVVSGTPGRVCDMIKRK-----TL-RTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP---P----- 205 (298)
Q Consensus 145 ---~--~~~~~~~~ilV~Tp~~l~~~~~~~-----~~-~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~---~----- 205 (298)
+ ..-....||+||+|--|..++.+. .+ .++.+.++|||-+|.++... ..++..++..+. .
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~~ 452 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHDV 452 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccCC
Confidence 0 000135799999998888877642 22 25889999999999986543 344445554442 1
Q ss_pred ----------------CccEEEEEeeCchhHHHHHHhcCCC
Q 022383 206 ----------------DLQVVLISATLPHEILEMTTKFMTD 230 (298)
Q Consensus 206 ----------------~~~~v~~SAT~~~~~~~~~~~~~~~ 230 (298)
-.|.+++|+--.+.+..+...++.+
T Consensus 453 DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N 493 (698)
T KOG2340|consen 453 DFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQN 493 (698)
T ss_pred ChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 2578888888777777666665543
No 162
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=98.29 E-value=1.5e-05 Score=74.81 Aligned_cols=141 Identities=17% Similarity=0.200 Sum_probs=85.3
Q ss_pred hHHHHHHHHHhhcCCcEEEEcCCCCchHHHHH--HHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEE
Q 022383 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA--LTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (298)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~--~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (298)
..+|+.++...+.++-+++.|+.|+|||.... +..+..........++++.+||-.-+..+.+.+......++..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~--- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA--- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc---
Confidence 37999999999999999999999999996533 2223222221123578999999988888887665533221110
Q ss_pred EEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc------cCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCcc
Q 022383 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~------~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~ 208 (298)
... ......-..|-.+++..... ...+...+++|||||+-++. ...+..+++.+++..+
T Consensus 224 -------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~r 288 (586)
T TIGR01447 224 -------EAL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNTK 288 (586)
T ss_pred -------hhh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCCE
Confidence 000 00011112333333221110 11223467999999997652 3456677888888888
Q ss_pred EEEEEee
Q 022383 209 VVLISAT 215 (298)
Q Consensus 209 ~v~~SAT 215 (298)
+|++--.
T Consensus 289 lIlvGD~ 295 (586)
T TIGR01447 289 LILLGDK 295 (586)
T ss_pred EEEECCh
Confidence 8877554
No 163
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=98.28 E-value=2.8e-05 Score=73.22 Aligned_cols=140 Identities=16% Similarity=0.199 Sum_probs=85.1
Q ss_pred hHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHH--HHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEE
Q 022383 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIAL--TVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (298)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~--~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (298)
.++|+.++...+.++-.+|.|++|+|||....- ..+..... ....++.+..||..-+..+.+.+.......+..
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~-~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~--- 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLT--- 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcC-CCCcEEEEECCcHHHHHHHHHHHHhhhhccccc---
Confidence 589999999999999999999999999966422 22222211 123478888999998888888776543322210
Q ss_pred EEcCCchHHHHHHhhcCCcEEEeChHHHHHHHh------ccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCcc
Q 022383 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK------RKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~------~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~ 208 (298)
...... ...-..|-.+++.... ....+....++|||||+-++- ...+..+++.+++..+
T Consensus 230 -------~~~~~~----~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~r 294 (615)
T PRK10875 230 -------DEQKKR----IPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHAR 294 (615)
T ss_pred -------hhhhhc----CCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCCE
Confidence 000000 0111122222221111 111233456899999997752 4556677888888888
Q ss_pred EEEEEee
Q 022383 209 VVLISAT 215 (298)
Q Consensus 209 ~v~~SAT 215 (298)
+|++--.
T Consensus 295 lIlvGD~ 301 (615)
T PRK10875 295 VIFLGDR 301 (615)
T ss_pred EEEecch
Confidence 8887655
No 164
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.26 E-value=1.8e-05 Score=66.92 Aligned_cols=160 Identities=21% Similarity=0.141 Sum_probs=101.9
Q ss_pred CChHHHHHHHHHhh----------cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 55 KPSAIQQRAVMPII----------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~----------~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
.++..|-+++-... .+...++-=.||.||--...-.+++...... .++|+++.+..|..+..+-++.+
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr--~r~vwvS~s~dL~~Da~RDl~DI 114 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR--KRAVWVSVSNDLKYDAERDLRDI 114 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC--CceEEEECChhhhhHHHHHHHHh
Confidence 46888888876543 2356777778999998766666777766643 37899999999999999999888
Q ss_pred hccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhcc---Ccc---------CCCccEEEechhhHhhcccc
Q 022383 125 GDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK---TLR---------TRAIKLLVLDESDEMLSRGF 192 (298)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~---~~~---------~~~l~~vViDE~h~~~~~~~ 192 (298)
+.. .+.+..+..-... ....-.-.|+.+|-..|......+ .-. -..=.+||+||||..-...-
T Consensus 115 G~~-~i~v~~l~~~~~~----~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 115 GAD-NIPVHPLNKFKYG----DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CCC-cccceechhhccC----cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 644 3333222211000 001123468999988877664321 000 13345899999999754421
Q ss_pred --------HHHHHHHHHhCCCCccEEEEEeeCchhHHH
Q 022383 193 --------KDQIYDVYRYLPPDLQVVLISATLPHEILE 222 (298)
Q Consensus 193 --------~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~ 222 (298)
...+..+-+.+| +.+++.+|||--.+..+
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep~N 226 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLP-NARVVYASATGASEPRN 226 (303)
T ss_pred cCccccHHHHHHHHHHHhCC-CCcEEEecccccCCCce
Confidence 234444555664 67799999997544333
No 165
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.24 E-value=1.6e-05 Score=75.57 Aligned_cols=67 Identities=18% Similarity=0.207 Sum_probs=53.2
Q ss_pred CCChHHHHHHHHHhhcC-CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 022383 54 EKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~-~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (298)
..+++.|..++..++.. ..++|.||+|+|||....-.+.+.+.. +.++++++||..-++++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~---g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR---GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEEcCcHHHHHHHHHHHHh
Confidence 35799999999998866 678899999999996654444443333 44899999999999999998875
No 166
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=98.21 E-value=2.5e-05 Score=75.24 Aligned_cols=126 Identities=22% Similarity=0.233 Sum_probs=78.7
Q ss_pred CCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEE
Q 022383 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~ 133 (298)
..+++.|.+++..+..++-+++.|+.|+|||... -.++..+........+++++||-.-+..+.+.. +....
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~-------g~~a~ 393 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT-------GLTAS 393 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc-------CCccc
Confidence 4599999999999998899999999999999653 233343333221246788899987776554421 21111
Q ss_pred EEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc-----cCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCcc
Q 022383 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-----KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ 208 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~-----~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~ 208 (298)
|-.+++..... ..-.....++|||||++++.. ..+..+++.++...+
T Consensus 394 ------------------------Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~~~~r 445 (720)
T TIGR01448 394 ------------------------TIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAALPDHAR 445 (720)
T ss_pred ------------------------cHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHHHhCCCCCE
Confidence 11111110000 001124578999999998732 345666777887888
Q ss_pred EEEEEee
Q 022383 209 VVLISAT 215 (298)
Q Consensus 209 ~v~~SAT 215 (298)
+|++--+
T Consensus 446 lilvGD~ 452 (720)
T TIGR01448 446 LLLVGDT 452 (720)
T ss_pred EEEECcc
Confidence 8887554
No 167
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.21 E-value=1.2e-05 Score=78.29 Aligned_cols=161 Identities=18% Similarity=0.205 Sum_probs=105.2
Q ss_pred CChHHHHHHHHHhh--c--CCcEEEEcCCCCchHHHHHHHHHH-hhccC----CCCe-EEEEEcCcHHHHHHHHHHHHHh
Q 022383 55 KPSAIQQRAVMPII--K--GRDVIAQAQSGTGKTSMIALTVCQ-TVDTS----SREV-QALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~--~--~~~~li~~pTG~GKT~~~~~~~~~-~~~~~----~~~~-~~lil~p~~~l~~q~~~~~~~~ 124 (298)
.++.||++.++.+. + +-+-|+|--.|-|||+-.+-.+.. +.... .... -.||+||+ .|+..+...++++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 57899999887653 2 358899999999999764433322 22221 1112 38999995 6899999999998
Q ss_pred hccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCC
Q 022383 125 GDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (298)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~ 204 (298)
... +++..+.|+.......+.-.++.+|+|++-+.+..-+.. +.-....|.|+||-|-+-.. ...+.+..+.+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~ 1127 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLR 1127 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHh
Confidence 776 566667776666555555556789999998776532221 11134569999999987332 444555555554
Q ss_pred CCccEEEEEeeC-chhHHHH
Q 022383 205 PDLQVVLISATL-PHEILEM 223 (298)
Q Consensus 205 ~~~~~v~~SAT~-~~~~~~~ 223 (298)
.+ ..+++|.|+ .+.+.++
T Consensus 1128 a~-hRLILSGTPIQNnvleL 1146 (1549)
T KOG0392|consen 1128 AN-HRLILSGTPIQNNVLEL 1146 (1549)
T ss_pred hc-ceEEeeCCCcccCHHHH
Confidence 33 356678886 4544443
No 168
>PF13245 AAA_19: Part of AAA domain
Probab=98.21 E-value=8.2e-06 Score=55.05 Aligned_cols=51 Identities=25% Similarity=0.429 Sum_probs=38.4
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhc--cCCCCeEEEEEcCcHHHHHHHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVD--TSSREVQALILSPTRELATQTEKVI 121 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~--~~~~~~~~lil~p~~~l~~q~~~~~ 121 (298)
++-++|.||.|+|||...+-.+...+. ... +.++++++|++..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 344556999999999766555555552 222 568999999999999999877
No 169
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.11 E-value=1.6e-05 Score=72.40 Aligned_cols=65 Identities=22% Similarity=0.294 Sum_probs=53.0
Q ss_pred CCChHHHHHHHHHhhcCC-cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHH
Q 022383 54 EKPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~-~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 121 (298)
..+.+.|..++....+.+ -.++.||+|+|||.+....+.+.+.. +.++++..||.+-++.+.+++
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~---~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ---KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc---CCeEEEEcCchHHHHHHHHHh
Confidence 468899999999888775 47888999999998766666665555 458999999999999999864
No 170
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=98.11 E-value=1.3e-05 Score=78.09 Aligned_cols=159 Identities=16% Similarity=0.152 Sum_probs=103.6
Q ss_pred CCChHHHHHHHHHhh----cCCcEEEEcCCCCchH---HHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 022383 54 EKPSAIQQRAVMPII----KGRDVIAQAQSGTGKT---SMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~----~~~~~li~~pTG~GKT---~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (298)
..++.+|-+.++.++ .+.++|+.-..|-||| .+|+-.+++...- .|| .|+++|...+ ..+.+.|..++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~--~gp-flvvvplst~-~~W~~ef~~w~- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQI--HGP-FLVVVPLSTI-TAWEREFETWT- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhc--cCC-eEEEeehhhh-HHHHHHHHHHh-
Confidence 679999999887654 6899999999999999 4566666665422 244 5778886553 34455555554
Q ss_pred cCCceEEEEEcCCchHHHHHHhh----c-----CCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHH
Q 022383 127 FINIQAHACVGGKSVGEDIRKLE----H-----GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (298)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~ 197 (298)
+++++.++|+....+.++... . ..+++++|.+.++.--. .+.--...+++|||||++-... ...+.
T Consensus 444 --~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~~-~~l~~ 518 (1373)
T KOG0384|consen 444 --DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKNDE-SKLYE 518 (1373)
T ss_pred --hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCchH-HHHHH
Confidence 788999999877766655543 2 36899999988764221 1222355789999999984331 22233
Q ss_pred HHHHhCCCCccEEEEEeeC-chhHHHHH
Q 022383 198 DVYRYLPPDLQVVLISATL-PHEILEMT 224 (298)
Q Consensus 198 ~i~~~~~~~~~~v~~SAT~-~~~~~~~~ 224 (298)
. +..+.- ...+++|.|+ .+.+..+.
T Consensus 519 ~-l~~f~~-~~rllitgTPlQNsikEL~ 544 (1373)
T KOG0384|consen 519 S-LNQFKM-NHRLLITGTPLQNSLKELW 544 (1373)
T ss_pred H-HHHhcc-cceeeecCCCccccHHHHH
Confidence 3 444432 3356667775 55555544
No 171
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.09 E-value=2e-05 Score=74.32 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=83.6
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC------CceEEEEEcCCchHHH
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI------NIQAHACVGGKSVGED 144 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 144 (298)
-++-|.+.||+|||.||+-.++..-..-. -.+-||+||+.+.-.-+.-..+.....+ +.+.-.+.-+......
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG-~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~ 153 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYG-LFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKF 153 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhC-ceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHH
Confidence 47889999999999999988877544432 2367999999988777554444332222 2333333222111111
Q ss_pred HHHhhcCCcEEEeChHHHHHH------HhccCccCCC-----------c----cEEEechhhHhhccccHHHHHHHHHhC
Q 022383 145 IRKLEHGVHVVSGTPGRVCDM------IKRKTLRTRA-----------I----KLLVLDESDEMLSRGFKDQIYDVYRYL 203 (298)
Q Consensus 145 ~~~~~~~~~ilV~Tp~~l~~~------~~~~~~~~~~-----------l----~~vViDE~h~~~~~~~~~~i~~i~~~~ 203 (298)
.....+.+.+++.|...+..- ++.......+ + -.||+||-|.+..+ -..+..+....
T Consensus 154 ~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~--~k~~~~i~~l~ 231 (985)
T COG3587 154 KFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGD--DKTYGAIKQLN 231 (985)
T ss_pred hhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccc--hHHHHHHHhhC
Confidence 122235677888776555432 2221111111 1 25999999999764 23333333333
Q ss_pred CCCccEEEEEeeCchhHH
Q 022383 204 PPDLQVVLISATLPHEIL 221 (298)
Q Consensus 204 ~~~~~~v~~SAT~~~~~~ 221 (298)
| .-++=++||.+....
T Consensus 232 p--l~ilRfgATfkd~y~ 247 (985)
T COG3587 232 P--LLILRFGATFKDEYN 247 (985)
T ss_pred c--eEEEEecccchhhhc
Confidence 2 336678999876543
No 172
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.06 E-value=0.00012 Score=69.84 Aligned_cols=127 Identities=17% Similarity=0.252 Sum_probs=92.3
Q ss_pred hHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEE
Q 022383 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACV 136 (298)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~ 136 (298)
+|+=.+.+-.+.-+..-+..+-||-|||++..+|+.-.-.. +..+-++.-..-|+..-.+.+..+..++|+.++...
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~---gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~ 156 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA---GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVIL 156 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC---CCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeecc
Confidence 33334455555556667889999999999988887554333 335788888999999999999999999999999988
Q ss_pred cCCchHHHHHHhhcCCcEEEeChHHHH-HHHhc------cCccCCCccEEEechhhHhh
Q 022383 137 GGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKR------KTLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 137 ~~~~~~~~~~~~~~~~~ilV~Tp~~l~-~~~~~------~~~~~~~l~~vViDE~h~~~ 188 (298)
.+.+..+....+ .|||..+|...|- .+++. .......+.+-|+||+|.++
T Consensus 157 ~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 157 AGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred CCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 887665554444 4899999987663 12221 22334568899999999865
No 173
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.04 E-value=1.5e-05 Score=73.48 Aligned_cols=134 Identities=17% Similarity=0.105 Sum_probs=86.8
Q ss_pred CChHHHHHHHHHhhc-----CCcEEEEcCCCCchHHHHHHHHHHhhc-----cC--CCCeEEEEEcCcHHHHHHHHHHHH
Q 022383 55 KPSAIQQRAVMPIIK-----GRDVIAQAQSGTGKTSMIALTVCQTVD-----TS--SREVQALILSPTRELATQTEKVIL 122 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~-----~~~~li~~pTG~GKT~~~~~~~~~~~~-----~~--~~~~~~lil~p~~~l~~q~~~~~~ 122 (298)
.+.|+|..++..+.. +...|+....|-|||+..+-.++++=. .. .....+||||| ..|..|+...+.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P-aSli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP-ASLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc-HHHHHHHHHHHH
Confidence 578999998876652 246788889999999875555544321 11 11124899999 467889988887
Q ss_pred HhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHH----HHhcc--CccCC--CccEEEechhhHhhcc
Q 022383 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCD----MIKRK--TLRTR--AIKLLVLDESDEMLSR 190 (298)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~----~~~~~--~~~~~--~l~~vViDE~h~~~~~ 190 (298)
+......+++..++|.....-. ......+||+|+|..-+.. -...+ .-.+. ....||+||||.+-+.
T Consensus 404 ~rl~~n~LsV~~~HG~n~r~i~-~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~ 478 (901)
T KOG4439|consen 404 RRLEQNALSVYLYHGPNKREIS-AKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNS 478 (901)
T ss_pred HHHhhcceEEEEecCCccccCC-HHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhccc
Confidence 6666667899999987642222 2223568999999755544 11111 11122 2355999999998544
No 174
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=97.95 E-value=1.8e-05 Score=76.53 Aligned_cols=126 Identities=17% Similarity=0.232 Sum_probs=89.4
Q ss_pred ChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE
Q 022383 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (298)
++++|- +-.+.-++.-+..+.||-|||+++.+|++-.... |..|=+|+.+--||..=.+.+..+..++|+.+...
T Consensus 139 ~ydVQL--iGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~---G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i 213 (1025)
T PRK12900 139 PYDVQL--IGGIVLHSGKISEMATGEGKTLVSTLPTFLNALT---GRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVI 213 (1025)
T ss_pred ccchHH--hhhHHhhcCCccccCCCCCcchHhHHHHHHHHHc---CCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeee
Confidence 555554 4444434455789999999999998887655444 33466778888999988889999999999999887
Q ss_pred EcCCchHHHHHHhhcCCcEEEeChHHHH-HHHhcc------CccCCCccEEEechhhHhh
Q 022383 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRK------TLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~ilV~Tp~~l~-~~~~~~------~~~~~~l~~vViDE~h~~~ 188 (298)
..+.+.... .-.-.|||..||...|- .+++.+ ..-.+.+.+.||||+|.++
T Consensus 214 ~~~~~~~~R--r~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 214 LNTMRPEER--REQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred CCCCCHHHH--HHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 665554443 33445899999987663 233332 2234778999999999975
No 175
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=0.00033 Score=62.33 Aligned_cols=129 Identities=19% Similarity=0.203 Sum_probs=71.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhcc-CCCCeEEEEEc--CcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILS--PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~-~~~~~~~lil~--p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (298)
+.++++||||+|||.+..-.+...... ...+.++.++. +.+.-+..+ ++.++...++++...
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~~------------ 239 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKAI------------ 239 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEee------------
Confidence 568999999999997765444322211 12234555555 333333332 444554445543221
Q ss_pred hhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc-cHHHHHHHHHhCCCC-ccEEEEEeeCch-hHHHHH
Q 022383 148 LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPD-LQVVLISATLPH-EILEMT 224 (298)
Q Consensus 148 ~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~-~~~~i~~i~~~~~~~-~~~v~~SAT~~~-~~~~~~ 224 (298)
-+++.+...+.. +.+.++|+||++.+..... ....+..+++...+. -.++.+|||... .+....
T Consensus 240 ---------~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 240 ---------ESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred ---------CcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 123334343332 3578999999998765332 234555555555433 356888999864 445455
Q ss_pred Hhc
Q 022383 225 TKF 227 (298)
Q Consensus 225 ~~~ 227 (298)
..+
T Consensus 307 ~~~ 309 (388)
T PRK12723 307 HQF 309 (388)
T ss_pred HHh
Confidence 555
No 176
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.90 E-value=4.1e-05 Score=66.45 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=74.4
Q ss_pred ChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC-CCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEE
Q 022383 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (298)
+++-|.+++.. ..++++|.|+.|||||.+.+--+...+... -...+++++++|+..+.++..++...........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~~-- 76 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQES-- 76 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHCC--
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcccccc--
Confidence 46789998877 788999999999999988766655555443 2345899999999999999999987643321100
Q ss_pred EEcCCchHHHHHHhhcCCcEEEeChHHHHHH-HhccCccC-CCccEEEechhh
Q 022383 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDM-IKRKTLRT-RAIKLLVLDESD 185 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~-~~~~~~~~-~~l~~vViDE~h 185 (298)
...............+.|+|-..+..- ++...... -.-.+-++|+..
T Consensus 77 ----~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 77 ----SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ----TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ----cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 000011112223346788888777653 33321111 123456666665
No 177
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.86 E-value=0.00036 Score=68.98 Aligned_cols=123 Identities=20% Similarity=0.118 Sum_probs=75.5
Q ss_pred CChHHHHHHHHHhhcCC-cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEE
Q 022383 55 KPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~-~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~ 133 (298)
.+++-|.+++..++.++ -++++|+.|+|||.+ +-.+...+.. .+.+++.++||-.-+..+.+ ..++..
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--~G~~V~~~ApTGkAA~~L~e-------~tGi~a- 414 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--AGYEVRGAALSGIAAENLEG-------GSGIAS- 414 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--cCCeEEEecCcHHHHHHHhh-------ccCcch-
Confidence 49999999999999865 478999999999975 3344444433 25689999999866655432 112211
Q ss_pred EEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhC-CCCccEEEE
Q 022383 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLI 212 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~-~~~~~~v~~ 212 (298)
.|..++..-...+...+...++|||||+-++... .+..+++.. +...++|++
T Consensus 415 -----------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 415 -----------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR----QLERVLSHAADAGAKVVLV 467 (988)
T ss_pred -----------------------hhHHHHHhhhcccccccccCcEEEEECcccCCHH----HHHHHHHhhhhCCCEEEEE
Confidence 1222221111122234567789999999876433 334455443 346677776
Q ss_pred Eee
Q 022383 213 SAT 215 (298)
Q Consensus 213 SAT 215 (298)
--+
T Consensus 468 GD~ 470 (988)
T PRK13889 468 GDP 470 (988)
T ss_pred CCH
Confidence 555
No 178
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.85 E-value=0.00014 Score=70.90 Aligned_cols=159 Identities=15% Similarity=0.196 Sum_probs=103.9
Q ss_pred CChHHHHHHHHHhh----cCCcEEEEcCCCCchHHHHHHHHHHhhccCC--CCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 022383 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS--REVQALILSPTRELATQTEKVILAIGDFI 128 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~--~~~~~lil~p~~~l~~q~~~~~~~~~~~~ 128 (298)
.++.||...++.+. ++-|-|+.-..|-|||.- .+.++.++..+. =|+ -|||+||-.+. .+.=.|++++.
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeegnWGP-HLIVVpTsviL-nWEMElKRwcP-- 689 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEGNWGP-HLIVVPTSVIL-NWEMELKRWCP-- 689 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhcccCCCC-ceEEeechhhh-hhhHHHhhhCC--
Confidence 58889998887654 445889999999999943 344555554432 233 57888887654 34445777754
Q ss_pred CceEEEEEcCCchHHHH-HHhh--cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCC
Q 022383 129 NIQAHACVGGKSVGEDI-RKLE--HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (298)
Q Consensus 129 ~~~~~~~~~~~~~~~~~-~~~~--~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~ 205 (298)
++++..++|........ +.+. +..+|-|++...+..-+. .|.-.+..|+|+||+|.+-.+. ...|+.++...
T Consensus 690 glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnfk-sqrWQAllnfn-- 764 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNFK-SQRWQALLNFN-- 764 (1958)
T ss_pred cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcchh-HHHHHHHhccc--
Confidence 68899999986654333 2232 345677777665555433 2444677899999999985442 55677776664
Q ss_pred CccEEEEEeeC-chhHHHH
Q 022383 206 DLQVVLISATL-PHEILEM 223 (298)
Q Consensus 206 ~~~~v~~SAT~-~~~~~~~ 223 (298)
..+.++++.|+ .+.+.++
T Consensus 765 sqrRLLLtgTPLqNslmEL 783 (1958)
T KOG0391|consen 765 SQRRLLLTGTPLQNSLMEL 783 (1958)
T ss_pred hhheeeecCCchhhHHHHH
Confidence 34567777775 5554443
No 179
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.84 E-value=0.00042 Score=67.21 Aligned_cols=121 Identities=18% Similarity=0.160 Sum_probs=73.2
Q ss_pred CChHHHHHHHHHhhcC-CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEE
Q 022383 55 KPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~-~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~ 133 (298)
.+++-|.+++..+..+ +-+++.|+.|+|||... -.+...+... +.++++++||-.-+..+.+ ..++...
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~~--g~~V~~~ApTg~Aa~~L~~-------~~g~~a~ 421 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEAA--GYRVIGAALSGKAAEGLQA-------ESGIESR 421 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHhC--CCeEEEEeCcHHHHHHHHh-------ccCCcee
Confidence 4899999999998874 67899999999999653 2344444332 5588999999766655543 1122111
Q ss_pred EEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhC-CCCccEEEE
Q 022383 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLI 212 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~-~~~~~~v~~ 212 (298)
|-.++..-.......+...++|||||+-++....+ ..+++.. ....++|++
T Consensus 422 ------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~~~----~~Ll~~~~~~~~kliLV 473 (744)
T TIGR02768 422 ------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGSRQM----ARVLKEAEEAGAKVVLV 473 (744)
T ss_pred ------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCHHHH----HHHHHHHHhcCCEEEEE
Confidence 11122111122223356789999999987643333 3344422 245666666
Q ss_pred E
Q 022383 213 S 213 (298)
Q Consensus 213 S 213 (298)
-
T Consensus 474 G 474 (744)
T TIGR02768 474 G 474 (744)
T ss_pred C
Confidence 5
No 180
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.82 E-value=0.0001 Score=62.03 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=41.4
Q ss_pred CccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeC---chhHHHHHHhcCC
Q 022383 170 TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL---PHEILEMTTKFMT 229 (298)
Q Consensus 170 ~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~---~~~~~~~~~~~~~ 229 (298)
....+.++.||+||||.|.... +..+++.++..+...+++++..-+ ++.+..-+.++.-
T Consensus 124 ~~~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrF 185 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRF 185 (346)
T ss_pred CCCCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcC
Confidence 3445677899999999997654 667777888887788888887765 3444555555443
No 181
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.81 E-value=0.00027 Score=60.99 Aligned_cols=144 Identities=16% Similarity=0.234 Sum_probs=89.6
Q ss_pred CCCCCChHHHHHHHHHhhcC--CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 022383 51 YGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~--~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~ 128 (298)
+|+...+..|.-+++.+++. +=|.+.|+.|+|||+-++-+.+.++...+...++|+-=|+..+.+++-
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIG---------- 293 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIG---------- 293 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccC----------
Confidence 68888888999999999876 457888999999999888888888777666667777778876554321
Q ss_pred CceEEEEEcCCc--hHHHHHHhhcCCcEEE----eChHHHHHHHhccCccC--------C--CccEEEechhhHhhcccc
Q 022383 129 NIQAHACVGGKS--VGEDIRKLEHGVHVVS----GTPGRVCDMIKRKTLRT--------R--AIKLLVLDESDEMLSRGF 192 (298)
Q Consensus 129 ~~~~~~~~~~~~--~~~~~~~~~~~~~ilV----~Tp~~l~~~~~~~~~~~--------~--~l~~vViDE~h~~~~~~~ 192 (298)
.+-|... ...+.+.+...-.++. ++-+.+...+....+.+ + .=.+||||||+.+ -
T Consensus 294 -----fLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNL----T 364 (436)
T COG1875 294 -----FLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNL----T 364 (436)
T ss_pred -----cCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhcc----C
Confidence 1111100 0111111111111111 12333444433322211 1 2268999999876 3
Q ss_pred HHHHHHHHHhCCCCccEEEEE
Q 022383 193 KDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 193 ~~~i~~i~~~~~~~~~~v~~S 213 (298)
...+..++.+..+..++|++.
T Consensus 365 pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred HHHHHHHHHhccCCCEEEEcC
Confidence 677888999998888877753
No 182
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.81 E-value=0.00018 Score=53.90 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=12.9
Q ss_pred cCCcEEEEcCCCCchHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~ 88 (298)
+++.+++.||+|+|||....
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ----EEEEE-TTSSHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHH
Confidence 35678999999999997644
No 183
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.79 E-value=4.6e-05 Score=73.95 Aligned_cols=128 Identities=17% Similarity=0.211 Sum_probs=89.5
Q ss_pred ChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE
Q 022383 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (298)
+.++-.+.+-.+.-.+.-+..+.||-|||+++.+|++-.... |..|-+++.+--||..=.+.+..+..++|+.+...
T Consensus 168 m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~---GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i 244 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALT---GNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCI 244 (1112)
T ss_pred CcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHc---CCCcEEEEechhhhhccHHHHHHHHHHhCCceeec
Confidence 344444555555545666889999999999998887665444 33467778888999888888888888999999876
Q ss_pred Ec-CCchHHHHHHhhcCCcEEEeChHHHH-HHHhcc------CccCCCccEEEechhhHhh
Q 022383 136 VG-GKSVGEDIRKLEHGVHVVSGTPGRVC-DMIKRK------TLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 136 ~~-~~~~~~~~~~~~~~~~ilV~Tp~~l~-~~~~~~------~~~~~~l~~vViDE~h~~~ 188 (298)
.. +.+..+ ++-.-.|||..+|...|- ++++.+ ....+.+.+.||||+|.++
T Consensus 245 ~~~~~~~~~--rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 245 DKHQPNSEA--RRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred CCCCCCHHH--HHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 54 223322 333445899999987653 333332 2234678999999999975
No 184
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.79 E-value=7.1e-05 Score=62.24 Aligned_cols=87 Identities=21% Similarity=0.321 Sum_probs=67.9
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCC-chHHHHHHhh-cCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 99 SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGK-SVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 99 ~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
...|.+||||.+---|-++.+.++.+.. .+..++.++... ...+++..+. ...+|.||||+|+..++..+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 3568999999998888888888877631 124455555543 6667777676 578999999999999999999999999
Q ss_pred cEEEechhhH
Q 022383 177 KLLVLDESDE 186 (298)
Q Consensus 177 ~~vViDE~h~ 186 (298)
.+||+|--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999996543
No 185
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.73 E-value=0.00075 Score=51.09 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchHHH
Q 022383 70 GRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~ 86 (298)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999954
No 186
>PRK04296 thymidine kinase; Provisional
Probab=97.69 E-value=0.00011 Score=59.15 Aligned_cols=37 Identities=11% Similarity=0.231 Sum_probs=24.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (298)
|.-.++.||+|+|||...+-.+...... +.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~---g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER---GMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc---CCeEEEEec
Confidence 3457889999999997655444333222 457777766
No 187
>PRK08181 transposase; Validated
Probab=97.64 E-value=0.00086 Score=56.83 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=32.7
Q ss_pred hHHHHHHHH----HhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHH
Q 022383 57 SAIQQRAVM----PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (298)
Q Consensus 57 ~~~Q~~~~~----~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (298)
.+.|..++. .+..++++++.||+|+|||....- +...+.. .+..++|+ +..+|+.++.
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~--~g~~v~f~-~~~~L~~~l~ 150 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAA-IGLALIE--NGWRVLFT-RTTDLVQKLQ 150 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHH-HHHHHHH--cCCceeee-eHHHHHHHHH
Confidence 445555442 234678999999999999954332 2222222 13345544 4455555554
No 188
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.63 E-value=7.1e-05 Score=67.54 Aligned_cols=104 Identities=18% Similarity=0.118 Sum_probs=70.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (298)
++-++=+|||.||||-- +++++...+ ..+|-.|.+-||.++++++.+. |+.+.+++|......... .
T Consensus 191 RkIi~H~GPTNSGKTy~----ALqrl~~ak---sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--~ 257 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYR----ALQRLKSAK---SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--G 257 (700)
T ss_pred heEEEEeCCCCCchhHH----HHHHHhhhc---cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--C
Confidence 35567789999999965 556665533 4589999999999999998876 577777776433221110 1
Q ss_pred cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHH
Q 022383 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKD 194 (298)
Q Consensus 150 ~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~ 194 (298)
+.+..+=||.|+..- -..+++.||||+++|.+...+.
T Consensus 258 ~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGw 294 (700)
T KOG0953|consen 258 NPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGW 294 (700)
T ss_pred CcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccch
Confidence 234566677655431 2356789999999987665443
No 189
>PRK06526 transposase; Provisional
Probab=97.63 E-value=0.00019 Score=60.33 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=17.8
Q ss_pred hhcCCcEEEEcCCCCchHHHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~ 88 (298)
+..+++++++||+|+|||....
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHH
Confidence 3456899999999999996544
No 190
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.60 E-value=0.00046 Score=66.31 Aligned_cols=138 Identities=16% Similarity=0.167 Sum_probs=84.1
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCC-cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHH
Q 022383 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (298)
Q Consensus 38 l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~-~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 116 (298)
..+.+++... -...++.-|++|+..++.-+ ..+|.|=+|+|||...... +..+... +.++|+.+=|..-++.
T Consensus 656 ~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~L-IkiL~~~--gkkVLLtsyThsAVDN 728 (1100)
T KOG1805|consen 656 KVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLL-IKILVAL--GKKVLLTSYTHSAVDN 728 (1100)
T ss_pred cccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHH-HHHHHHc--CCeEEEEehhhHHHHH
Confidence 3455555554 23468889999998877554 5788899999999654332 2222222 5578888888888888
Q ss_pred HHHHHHHhhccCCceEEEEEcCCch-----------------HHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEE
Q 022383 117 TEKVILAIGDFINIQAHACVGGKSV-----------------GEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (298)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~v 179 (298)
+.-.++... +.+.-+..+... -+......+.+.|+.||=--+ ....+..+.+++.
T Consensus 729 ILiKL~~~~----i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi----~~plf~~R~FD~c 800 (1100)
T KOG1805|consen 729 ILIKLKGFG----IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGI----NHPLFVNRQFDYC 800 (1100)
T ss_pred HHHHHhccC----cceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCC----CchhhhccccCEE
Confidence 887766542 222211111111 122233445667777773211 2223445678999
Q ss_pred EechhhHhhcc
Q 022383 180 VLDESDEMLSR 190 (298)
Q Consensus 180 ViDE~h~~~~~ 190 (298)
|||||-++...
T Consensus 801 IiDEASQI~lP 811 (1100)
T KOG1805|consen 801 IIDEASQILLP 811 (1100)
T ss_pred EEccccccccc
Confidence 99999887543
No 191
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.58 E-value=0.0002 Score=63.69 Aligned_cols=60 Identities=23% Similarity=0.340 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHh------hcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHH
Q 022383 55 KPSAIQQRAVMPI------IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (298)
Q Consensus 55 ~~~~~Q~~~~~~~------~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 117 (298)
++++-|+++++.+ ..+.++++.||-|+|||..+- .+.+.+.. .+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~--~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS--RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc--ccceEEEecchHHHHHhc
Confidence 3678899998888 578899999999999996532 23333333 345788888987655555
No 192
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.54 E-value=0.00035 Score=52.51 Aligned_cols=41 Identities=15% Similarity=0.281 Sum_probs=25.2
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (298)
++.+++.||+|+|||...... ...+.... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l-~~~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARAL-ARELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHH-HhccCCCC--CCEEEECCEEcc
Confidence 567999999999999654322 22222211 246777766543
No 193
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.54 E-value=0.00099 Score=53.81 Aligned_cols=128 Identities=18% Similarity=0.235 Sum_probs=66.4
Q ss_pred cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC--cHHHH-HHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP--TRELA-TQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p--~~~l~-~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (298)
-++++||||+|||.+..-.+...... +.++.+++- .|.=+ +|+. .+++..++++.......+..+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~----~~a~~l~vp~~~~~~~~~~~~~---- 71 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLK----TYAEILGVPFYVARTESDPAEI---- 71 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHH----HHHHHHTEEEEESSTTSCHHHH----
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHH----HHHHHhccccchhhcchhhHHH----
Confidence 36899999999997765544443333 334555553 33333 3333 3333345554432222211111
Q ss_pred hcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhc-cccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHH
Q 022383 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 225 (298)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~-~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~ 225 (298)
+...++. ...++.++|+||-+-+... ......+..+.+...+..-.+.+|||..........
T Consensus 72 -------------~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 72 -------------AREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp -------------HHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred -------------HHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 1111111 1224567888887754322 234566667777776666678899999765444333
No 194
>PRK14974 cell division protein FtsY; Provisional
Probab=97.52 E-value=0.0015 Score=57.08 Aligned_cols=130 Identities=19% Similarity=0.268 Sum_probs=72.7
Q ss_pred cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCc---HHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT---RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~---~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (298)
-++++|++|+|||......+ ..+.. .+.+++++... .+-..|+..... ..++.+.....+.+....
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~--~g~~V~li~~Dt~R~~a~eqL~~~a~----~lgv~v~~~~~g~dp~~v---- 210 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKK--NGFSVVIAAGDTFRAGAIEQLEEHAE----RLGVKVIKHKYGADPAAV---- 210 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHH--cCCeEEEecCCcCcHHHHHHHHHHHH----HcCCceecccCCCCHHHH----
Confidence 47889999999997654333 22322 23456666543 333445444333 335544321111111110
Q ss_pred hcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc-ccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhc
Q 022383 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF 227 (298)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~-~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~ 227 (298)
+...+.. ......++|+||.+..+... .+...+..+.+...+...++.++|+...........+
T Consensus 211 -------------~~~ai~~--~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 211 -------------AYDAIEH--AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred -------------HHHHHHH--HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 1111111 11235689999999887533 4567777777777777778889998876655555544
No 195
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.51 E-value=0.0024 Score=63.73 Aligned_cols=137 Identities=18% Similarity=0.160 Sum_probs=81.1
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHhhc-CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHH
Q 022383 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (298)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (298)
+++.........++ .+++-|.+++..+.. ++-++++|+.|+|||.+. -.+...+.. .+.+++.++||-.-+..+.
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~--~G~~V~g~ApTgkAA~~L~ 442 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA--AGYRVVGGALAGKAAEGLE 442 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH--cCCeEEEEcCcHHHHHHHH
Confidence 34444444333333 499999999998864 567899999999999653 334443333 2558899999977665554
Q ss_pred HHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHH
Q 022383 119 KVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (298)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~ 198 (298)
+ ..|+... |-.++..-...+...+..-++|||||+.++.. ..+..
T Consensus 443 e-------~~Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~----~~m~~ 487 (1102)
T PRK13826 443 K-------EAGIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS----RQMAL 487 (1102)
T ss_pred H-------hhCCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCCH----HHHHH
Confidence 3 1232221 11111111111223455678999999987633 33344
Q ss_pred HHHhCC-CCccEEEEEee
Q 022383 199 VYRYLP-PDLQVVLISAT 215 (298)
Q Consensus 199 i~~~~~-~~~~~v~~SAT 215 (298)
+++... ...++|++.-+
T Consensus 488 Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 488 FVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHhcCCEEEEECCH
Confidence 555553 46777777655
No 196
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.51 E-value=0.00099 Score=63.48 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=49.4
Q ss_pred CChHHHHHHHHHhh----cCCcEEEEcCCCCchHHHHHHHHHHhh---c-----------c--------C----------
Q 022383 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTV---D-----------T--------S---------- 98 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~li~~pTG~GKT~~~~~~~~~~~---~-----------~--------~---------- 98 (298)
+|++.|...+..++ .+.+.++..|||+|||++.+-..+... . . .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 48999998877665 457899999999999987665544422 1 0 0
Q ss_pred --C-----CCeEEEEEcCcHHHHHHHHHHHHHhh
Q 022383 99 --S-----REVQALILSPTRELATQTEKVILAIG 125 (298)
Q Consensus 99 --~-----~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (298)
+ .-|++.|-+-|..-..|+.+.+++..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 0 12566666677777788888777653
No 197
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.51 E-value=0.0011 Score=58.73 Aligned_cols=131 Identities=17% Similarity=0.192 Sum_probs=61.6
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (298)
|..++++||||+|||......+........ ..++.++....-. .--.++++.++...++.+....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G-~~~V~lit~D~~R-~ga~EqL~~~a~~~gv~~~~~~------------- 201 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFG-ASKVALLTTDSYR-IGGHEQLRIFGKILGVPVHAVK------------- 201 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEeccccc-ccHHHHHHHHHHHcCCceEecC-------------
Confidence 578999999999999776544433222211 1244444422111 1112333344434444433322
Q ss_pred cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc-cHHHHHHHHHhCCCCccEEEEEeeCchhH-HHHHHhc
Q 022383 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPPDLQVVLISATLPHEI-LEMTTKF 227 (298)
Q Consensus 150 ~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~-~~~~i~~i~~~~~~~~~~v~~SAT~~~~~-~~~~~~~ 227 (298)
++..+...+.. +.+.++|+||.+-....+. ....+..+.....+...++.+|||..... ......|
T Consensus 202 --------~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 202 --------DGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred --------CcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 23333332221 3455888899885432111 22223222222222344778899985543 3333433
No 198
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.38 E-value=0.0078 Score=53.26 Aligned_cols=131 Identities=17% Similarity=0.263 Sum_probs=66.1
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCc-H-HHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT-R-ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~-~-~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (298)
++.+.++||||.|||...+-.+-..........-+||-.-| | .-+.|+. .+++..++++..+.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk----~Ya~im~vp~~vv~----------- 267 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLK----TYADIMGVPLEVVY----------- 267 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHH----HHHHHhCCceEEec-----------
Confidence 78899999999999976544333322122223345555542 2 2233333 33434455544444
Q ss_pred hhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHh-hccccHHHHHHHHHhCCCCccEEEEEeeCc-hhHHHHHH
Q 022383 148 LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM-LSRGFKDQIYDVYRYLPPDLQVVLISATLP-HEILEMTT 225 (298)
Q Consensus 148 ~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~-~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~-~~~~~~~~ 225 (298)
+|.-|...+.. +.+.++|.||=+-+- .+......+..+++.-.+---.+.+|||-. ..+.+...
T Consensus 268 ----------~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 268 ----------SPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred ----------CHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 34444433332 334466666644321 111234445555554433344677788874 44555555
Q ss_pred hcCC
Q 022383 226 KFMT 229 (298)
Q Consensus 226 ~~~~ 229 (298)
.|..
T Consensus 334 ~f~~ 337 (407)
T COG1419 334 QFSL 337 (407)
T ss_pred Hhcc
Confidence 5543
No 199
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.32 E-value=0.0014 Score=63.79 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=54.3
Q ss_pred CCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCC-CCeEEEEEcCcHHHHHHHHHHHHHhh
Q 022383 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIG 125 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (298)
..+++-|.+++.+ ...+++|.|..|||||.+..--+...+.... ...++++++.|+..|.++.+++.++.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 4689999999865 3568999999999999875554544443322 33489999999999999999998864
No 200
>PRK06921 hypothetical protein; Provisional
Probab=97.32 E-value=0.0038 Score=52.96 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=27.1
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 117 (298)
.+.++++.||+|+|||.... .+...+... .+..++|+. ..++..++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~~-~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMRK-KGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhhh-cCceEEEEE-HHHHHHHH
Confidence 35789999999999995432 333443332 134566655 34444443
No 201
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.32 E-value=0.0045 Score=54.91 Aligned_cols=129 Identities=14% Similarity=0.244 Sum_probs=66.4
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC--cH-HHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP--TR-ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK 147 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p--~~-~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (298)
+.+.++||||+|||......+... .. .+.++.++.. .+ +.+.|+.. ++...++.+..
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L-~~--~GkkVglI~aDt~RiaAvEQLk~----yae~lgipv~v------------- 301 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQF-HG--KKKTVGFITTDHSRIGTVQQLQD----YVKTIGFEVIA------------- 301 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH-HH--cCCcEEEEecCCcchHHHHHHHH----HhhhcCCcEEe-------------
Confidence 568999999999997655443332 22 2334555553 33 23333333 32222332221
Q ss_pred hhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc-ccHHHHHHHHHhCCCCccEEEEEeeCc-hhHHHHHH
Q 022383 148 LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLP-HEILEMTT 225 (298)
Q Consensus 148 ~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~-~~~~~i~~i~~~~~~~~~~v~~SAT~~-~~~~~~~~ 225 (298)
+.+|..+...+..-. ...+.++|+||-+=+.... .....+..+++...+..-++.+|||.. +.+.....
T Consensus 302 --------~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~ 372 (436)
T PRK11889 302 --------VRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIIT 372 (436)
T ss_pred --------cCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHH
Confidence 235555555443211 0125789999977543322 223444455554444444666888764 45566665
Q ss_pred hcC
Q 022383 226 KFM 228 (298)
Q Consensus 226 ~~~ 228 (298)
.+-
T Consensus 373 ~F~ 375 (436)
T PRK11889 373 NFK 375 (436)
T ss_pred Hhc
Confidence 543
No 202
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=97.30 E-value=0.00067 Score=65.37 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=91.5
Q ss_pred CCChHHHHHHHHHhh----cCCcEEEEcCCCCchHHHHHHHHHHhhccCC-CCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 022383 54 EKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIGDFI 128 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~----~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~~~~ 128 (298)
..+.+||...+.... ++-+-++.-.+|-|||..-.-.+...+.... .|| -+|++|+-.|.+=.. .|..++.
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP-~LvivPlstL~NW~~-Ef~kWaP-- 468 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGP-FLIIVPLSTLVNWSS-EFPKWAP-- 468 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCC-eEEeccccccCCchh-hcccccc--
Confidence 368999998887654 3457888899999999654433333332222 344 588899988765433 3444432
Q ss_pred CceEEEEEcCCchHHHH--HHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCC
Q 022383 129 NIQAHACVGGKSVGEDI--RKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206 (298)
Q Consensus 129 ~~~~~~~~~~~~~~~~~--~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~ 206 (298)
.+..+.+.|........ +......+|+++|-+.+.. ....+.--+..++||||.|+|-. ....+...+.-....
T Consensus 469 Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKN--a~~KLt~~L~t~y~~ 544 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKN--AICKLTDTLNTHYRA 544 (1157)
T ss_pred ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccc--hhhHHHHHhhccccc
Confidence 34444444432222211 2223678999999877764 11122223557899999999832 234444444433334
Q ss_pred ccEEEEEeeC
Q 022383 207 LQVVLISATL 216 (298)
Q Consensus 207 ~~~v~~SAT~ 216 (298)
...+++|.|+
T Consensus 545 q~RLLLTGTP 554 (1157)
T KOG0386|consen 545 QRRLLLTGTP 554 (1157)
T ss_pred hhhhhhcCCh
Confidence 5567778886
No 203
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=97.30 E-value=0.00072 Score=62.45 Aligned_cols=148 Identities=15% Similarity=0.106 Sum_probs=84.1
Q ss_pred HHHHHHHHHhh-----cC----CcEEEEcCCCCchHHHHHHHHHHh-hccCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 022383 58 AIQQRAVMPII-----KG----RDVIAQAQSGTGKTSMIALTVCQT-VDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (298)
Q Consensus 58 ~~Q~~~~~~~~-----~~----~~~li~~pTG~GKT~~~~~~~~~~-~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (298)
|||..++-.+. .| +.+++..|=|.|||......++.. +.....+..+++.+++++-+..+++.++++...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 67887777665 22 468999999999996654443333 344445678999999999999999999887543
Q ss_pred CCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHh--ccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCC
Q 022383 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIK--RKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (298)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~--~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~ 205 (298)
..... .... ...... ..-.|.....+.....+. ....+-.+.+++|+||+|.+.+......+..-....+
T Consensus 81 ~~~l~-~~~~-----~~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~~r~- 152 (477)
T PF03354_consen 81 SPELR-KRKK-----PKIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMGARP- 152 (477)
T ss_pred Chhhc-cchh-----hhhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhccCC-
Confidence 21100 0000 000000 011222221122221111 1233445779999999999865445555555555533
Q ss_pred CccEEEEE
Q 022383 206 DLQVVLIS 213 (298)
Q Consensus 206 ~~~~v~~S 213 (298)
+++++.+|
T Consensus 153 ~pl~~~IS 160 (477)
T PF03354_consen 153 NPLIIIIS 160 (477)
T ss_pred CceEEEEe
Confidence 45555543
No 204
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.28 E-value=0.003 Score=62.77 Aligned_cols=164 Identities=18% Similarity=0.120 Sum_probs=99.9
Q ss_pred CCChHHHHHHHHHhh-----cCCcEEEEcCCCCchHHHHHHHHHHhhccCCC-CeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 022383 54 EKPSAIQQRAVMPII-----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR-EVQALILSPTRELATQTEKVILAIGDF 127 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~-----~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~-~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (298)
..+.++|.+.++.+. .+.+.++.-..|.|||+..+..+......... .+.++++||+ +++.++.+.+.++...
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~-s~~~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPA-SLLSNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecH-HHHHHHHHHHhhhCcc
Confidence 567888999886644 25778888999999997655444432222222 3468899996 4567777777777554
Q ss_pred CCceEEEEEcCCch----HHHHHHhhcC-----CcEEEeChHHHHHHH-hccCccCCCccEEEechhhHhhccccHHHHH
Q 022383 128 INIQAHACVGGKSV----GEDIRKLEHG-----VHVVSGTPGRVCDMI-KRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (298)
Q Consensus 128 ~~~~~~~~~~~~~~----~~~~~~~~~~-----~~ilV~Tp~~l~~~~-~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~ 197 (298)
... +...+|.... .+....+... .+++++|-+.+.... ....+.-...+.+|+||+|.+-... .....
T Consensus 416 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~-s~~~~ 493 (866)
T COG0553 416 LRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQ-SSEGK 493 (866)
T ss_pred ccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhh-hHHHH
Confidence 332 5566665541 2333333322 689999998888742 1123444577899999999964432 22222
Q ss_pred HHHHhCCCCccEEEEEeeC-chhHHH
Q 022383 198 DVYRYLPPDLQVVLISATL-PHEILE 222 (298)
Q Consensus 198 ~i~~~~~~~~~~v~~SAT~-~~~~~~ 222 (298)
.+. .+.... .+.+|.|+ .+.+.+
T Consensus 494 ~l~-~~~~~~-~~~LtgTPlen~l~e 517 (866)
T COG0553 494 ALQ-FLKALN-RLDLTGTPLENRLGE 517 (866)
T ss_pred HHH-HHhhcc-eeeCCCChHhhhHHH
Confidence 333 333222 37778887 444333
No 205
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.27 E-value=0.0015 Score=62.69 Aligned_cols=81 Identities=22% Similarity=0.215 Sum_probs=56.3
Q ss_pred CCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC-CCCeEEEEEcCcHHHHHHHHHHHHHhhccCCce
Q 022383 53 FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (298)
Q Consensus 53 ~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 131 (298)
-..+++-|++++.. ...+++|.|..|||||.+..--+...+... ..+.++++++.++..+..+.+++.......++.
T Consensus 194 ~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~~v~ 271 (684)
T PRK11054 194 SSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTEDIT 271 (684)
T ss_pred CCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCCCcE
Confidence 35699999999853 346789999999999977544433333222 224489999999999999999887654322344
Q ss_pred EEEE
Q 022383 132 AHAC 135 (298)
Q Consensus 132 ~~~~ 135 (298)
+.++
T Consensus 272 v~TF 275 (684)
T PRK11054 272 ARTF 275 (684)
T ss_pred EEeH
Confidence 4443
No 206
>PRK05642 DNA replication initiation factor; Validated
Probab=97.27 E-value=0.002 Score=53.61 Aligned_cols=44 Identities=16% Similarity=0.399 Sum_probs=27.7
Q ss_pred CccEEEechhhHhhcc-ccHHHHHHHHHhCCCCccEEEEEeeCch
Q 022383 175 AIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPH 218 (298)
Q Consensus 175 ~l~~vViDE~h~~~~~-~~~~~i~~i~~~~~~~~~~v~~SAT~~~ 218 (298)
..+++|+|++|.+... .....+-.+++.+..+...++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 5578999999987432 3345566666665543345666676544
No 207
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=97.25 E-value=0.0021 Score=59.97 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=97.6
Q ss_pred ChHHHHHHHHHhh----cCCcEEEEcCCCCchHHHHHHHHHHhhccCCC--CeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 022383 56 PSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFIN 129 (298)
Q Consensus 56 ~~~~Q~~~~~~~~----~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (298)
+..+|-..++.+. +|-|-|+.-..|-|||.-. +..+.++..... || -|+++|...| ..+...+.++.. +
T Consensus 568 LKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~~nIwGP-FLVVtpaStL-~NWaqEisrFlP--~ 642 (1185)
T KOG0388|consen 568 LKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAETHNIWGP-FLVVTPASTL-HNWAQEISRFLP--S 642 (1185)
T ss_pred hHHHhhccHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHhccCCCc-eEEeehHHHH-hHHHHHHHHhCc--c
Confidence 4567777666544 6789999999999999654 344444433221 33 5777786554 455566666643 5
Q ss_pred ceEEEEEcCCchHHHHHH---------hhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHH
Q 022383 130 IQAHACVGGKSVGEDIRK---------LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVY 200 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~---------~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~ 200 (298)
+++..+-|+.+......+ -..+.+|+|++-+.+..-- +.+.--+..++|+|||..+-+. ....+..++
T Consensus 643 ~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDe--ky~qkvKWQYMILDEAQAIKSS-sS~RWKtLL 719 (1185)
T KOG0388|consen 643 FKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDE--KYLQKVKWQYMILDEAQAIKSS-SSSRWKTLL 719 (1185)
T ss_pred ceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechH--HHHHhhhhhheehhHHHHhhhh-hhhHHHHHh
Confidence 778888887776555444 2346789998876554211 1111124578999999987443 355566665
Q ss_pred HhCCCCccEEEEEeeC-chhHHHH
Q 022383 201 RYLPPDLQVVLISATL-PHEILEM 223 (298)
Q Consensus 201 ~~~~~~~~~v~~SAT~-~~~~~~~ 223 (298)
..- .+-.+++|.|+ .+.++++
T Consensus 720 sF~--cRNRLLLTGTPIQNsMqEL 741 (1185)
T KOG0388|consen 720 SFK--CRNRLLLTGTPIQNSMQEL 741 (1185)
T ss_pred hhh--ccceeeecCCccchHHHHH
Confidence 543 33368888887 4555543
No 208
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.23 E-value=0.0066 Score=55.04 Aligned_cols=128 Identities=14% Similarity=0.222 Sum_probs=65.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhh-ccCCCCeEEEEEcC--cHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTV-DTSSREVQALILSP--TRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~-~~~~~~~~~lil~p--~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (298)
++.++++||||+|||......+.... .. .+.++.++.- .+.-+. +.++.++...++.+..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~~------------ 283 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY--GKKKVALITLDTYRIGAV---EQLKTYAKIMGIPVEV------------ 283 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEECCccHHHHH---HHHHHHHHHhCCceEc------------
Confidence 46789999999999976554333322 12 1335555552 232221 2333333333333221
Q ss_pred HhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc-ccHHHHHHHHHhC-CCCccEEEEEeeCch-hHHHH
Q 022383 147 KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYL-PPDLQVVLISATLPH-EILEM 223 (298)
Q Consensus 147 ~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~-~~~~~i~~i~~~~-~~~~~~v~~SAT~~~-~~~~~ 223 (298)
+.++..+...+.. +.+.++|+||.+-..... .....+..+++.. .+....+++|||... .+...
T Consensus 284 ---------~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 284 ---------VYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred ---------cCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH
Confidence 2334444444442 235789999987443221 2234455555522 233447788998864 44444
Q ss_pred HHhc
Q 022383 224 TTKF 227 (298)
Q Consensus 224 ~~~~ 227 (298)
...+
T Consensus 351 ~~~f 354 (424)
T PRK05703 351 YKHF 354 (424)
T ss_pred HHHh
Confidence 4444
No 209
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.23 E-value=0.003 Score=57.99 Aligned_cols=47 Identities=9% Similarity=0.204 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (298)
..+++.||+|+|||... .++.+.+.....+.+++++ +...+..+...
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~~v~yi-~~~~~~~~~~~ 195 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKNPNAKVVYV-TSEKFTNDFVN 195 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEE-EHHHHHHHHHH
Confidence 46899999999999543 2333444332223456666 43444544433
No 210
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.22 E-value=0.0077 Score=46.53 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=23.2
Q ss_pred EEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHH
Q 022383 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (298)
Q Consensus 73 ~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (298)
+++.||+|+|||......+.... . .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~-~--~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA-T--KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH-h--cCCEEEEEECCcch
Confidence 68899999999965433322222 2 24467777665443
No 211
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.22 E-value=0.0018 Score=53.35 Aligned_cols=106 Identities=19% Similarity=0.324 Sum_probs=58.2
Q ss_pred cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcC
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (298)
.+++.||+|+|||- .+.++.+.+.....+.+++|+... +........++.
T Consensus 36 ~l~l~G~~G~GKTH-LL~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~---------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH-LLQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD---------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHH-HHHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT----------------------------
T ss_pred ceEEECCCCCCHHH-HHHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc----------------------------
Confidence 58999999999996 344455544433334466666532 333333332221
Q ss_pred CcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc-ccHHHHHHHHHhCC-CCccEEEEEeeCchh
Q 022383 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLP-PDLQVVLISATLPHE 219 (298)
Q Consensus 152 ~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~-~~~~~i~~i~~~~~-~~~~~v~~SAT~~~~ 219 (298)
...+.+... +...++++||++|.+... ..+..+..++..+. .+.++|+.|...|..
T Consensus 86 -----~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 86 -----GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp -----TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred -----ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 011112111 346799999999998544 23455555555543 356666666566554
No 212
>PHA02533 17 large terminase protein; Provisional
Probab=97.20 E-value=0.0036 Score=58.28 Aligned_cols=148 Identities=15% Similarity=0.177 Sum_probs=85.8
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC--ceE
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN--IQA 132 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~--~~~ 132 (298)
.+.|+|..++..+..++-.++..+=..|||.+....++...... .+..+++++|+..-+..+++.++.+..... .+.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~~ 137 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-KDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQP 137 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhhc
Confidence 48899999998876677778999999999987764443332222 245899999999999999988876543221 011
Q ss_pred EEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCC--CccEE
Q 022383 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP--DLQVV 210 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~--~~~~v 210 (298)
.. ... ....-.+.++..|.+.|.+ .....-.+.+++++||+|.+.+ +...+..+...+.. ..+++
T Consensus 138 ~i-~~~---~~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~~r~i 204 (534)
T PHA02533 138 GI-VEW---NKGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRSSKII 204 (534)
T ss_pred ce-eec---CccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCCceEE
Confidence 00 000 0000112355566555432 1112234668999999997633 23333333333322 23455
Q ss_pred EEEeeC
Q 022383 211 LISATL 216 (298)
Q Consensus 211 ~~SAT~ 216 (298)
++|.+.
T Consensus 205 iiSTp~ 210 (534)
T PHA02533 205 ITSTPN 210 (534)
T ss_pred EEECCC
Confidence 555553
No 213
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.20 E-value=0.0018 Score=63.03 Aligned_cols=71 Identities=15% Similarity=0.186 Sum_probs=54.2
Q ss_pred CCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC-CCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 022383 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIGD 126 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (298)
..+++-|.+++.+. ..+++|.|+.|||||.+..--+...+... -...++++|+-|+..|.++.+++.++..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 45899999998643 46899999999999977555444444322 2234899999999999999999988643
No 214
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.19 E-value=0.041 Score=59.08 Aligned_cols=209 Identities=12% Similarity=0.110 Sum_probs=110.2
Q ss_pred CChHHHHHHHHHhhcC--CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceE
Q 022383 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 132 (298)
.+++-|.+++..++.. +-.++.|+.|+|||.+. -.+...+.. .+.+++.++||..-+..+.+... ...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~--~G~~V~~lAPTgrAA~~L~e~~g-------~~A 498 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE--QGYEIQIITAGSLSAQELRQKIP-------RLA 498 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHhc-------chh
Confidence 4889999999998764 57899999999999653 233333333 25689999999877666655321 110
Q ss_pred EEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhC-CCCccEEE
Q 022383 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVL 211 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~-~~~~~~v~ 211 (298)
.. .......+.. ..-..|...+. .....+..-++|||||+-++. ...+..+++.. +.+.++|+
T Consensus 499 ~T------i~~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~garvVl 562 (1960)
T TIGR02760 499 ST------FITWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNSKLIL 562 (1960)
T ss_pred hh------HHHHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCCEEEE
Confidence 00 0011111111 01112222222 122334577899999998763 34455666554 35788888
Q ss_pred EEeeC--ch----hHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHH-HHHHHhhC-CCCcEEEEecchh
Q 022383 212 ISATL--PH----EILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDT-LCDLYDTL-TITQAVIFCNTKR 283 (298)
Q Consensus 212 ~SAT~--~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~-l~~ll~~~-~~~k~lIf~~s~~ 283 (298)
+.-+- +. .....+... +-+...... .......+ .+...+ ...++.. ...++... ...+++|+..+..
T Consensus 563 vGD~~QL~sV~aG~~f~~L~~~-gv~t~~l~~-i~rq~~~v--~i~~~~-~~~r~~~ia~~y~~L~~~r~~tliv~~t~~ 637 (1960)
T TIGR02760 563 LNDSAQRQGMSAGSAIDLLKEG-GVTTYAWVD-TKQQKASV--EISEAV-DKLRVDYIASAWLDLTPDRQNSQVLATTHR 637 (1960)
T ss_pred EcChhhcCccccchHHHHHHHC-CCcEEEeec-ccccCcce--eeeccC-chHHHHHHHHHHHhcccccCceEEEcCCcH
Confidence 87652 11 222233332 112211111 00111111 112111 2223333 33344433 3347999999999
Q ss_pred hHHHHHHHHhh
Q 022383 284 KIYYSVFYFWI 294 (298)
Q Consensus 284 ~~~~l~~~L~~ 294 (298)
+.+.+....+.
T Consensus 638 dr~~Ln~~iR~ 648 (1960)
T TIGR02760 638 EQQDLTQIIRN 648 (1960)
T ss_pred HHHHHHHHHHH
Confidence 98888877654
No 215
>PRK08727 hypothetical protein; Validated
Probab=97.18 E-value=0.0028 Score=52.74 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=21.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEc
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (298)
..+++.||+|+|||.... .+...+... +.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~~--~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQA--GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHc--CCcEEEEe
Confidence 459999999999994332 222332222 34666654
No 216
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=97.16 E-value=0.0037 Score=64.23 Aligned_cols=123 Identities=15% Similarity=0.174 Sum_probs=79.7
Q ss_pred ChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE
Q 022383 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (298)
.|+-|.+++. ..+++++|.|..|||||.+..--++..+..+....++++++=|++-+.++.+++++..... +.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~-~~---- 74 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKA-LQ---- 74 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHH-Hh----
Confidence 5788999997 4688999999999999988766666665543223479999999999999999887643221 00
Q ss_pred EcCCchHHHHHHhhcCCcEEEeChHHHHH-HHhccCccC-CCccEEEechhhH
Q 022383 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCD-MIKRKTLRT-RAIKLLVLDESDE 186 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~-~~~~~~~~~-~~l~~vViDE~h~ 186 (298)
...........+..-...-|+|-..+.. +++.....+ -...+=|.||...
T Consensus 75 -~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 75 -QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred -cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0001111222333334678999888875 444432211 1335566887765
No 217
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.15 E-value=0.0068 Score=50.63 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=25.7
Q ss_pred CCCccEEEechhhHhhccccH-HHHHHHHHhCCC-CccEEEEEeeCc
Q 022383 173 TRAIKLLVLDESDEMLSRGFK-DQIYDVYRYLPP-DLQVVLISATLP 217 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~-~~i~~i~~~~~~-~~~~v~~SAT~~ 217 (298)
+...+++||||++......+. ..+..++..... ..++++ |.-++
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tii-tSNl~ 205 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGM-LTNSN 205 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEE-eCCCC
Confidence 347789999999886533333 244456655433 444555 44443
No 218
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.15 E-value=0.0011 Score=63.78 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=53.5
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCC-CCeEEEEEcCcHHHHHHHHHHHHHhh
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIG 125 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (298)
.+++-|.+++.+ .+.+++|.|+.|||||.+..--+...+.... ...++++++.|+..|.++.+++.+..
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 378999999865 3567899999999999876655555554322 23479999999999999999998764
No 219
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.07 E-value=0.0015 Score=62.34 Aligned_cols=146 Identities=22% Similarity=0.246 Sum_probs=88.9
Q ss_pred HHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCC--eEEEEEcCcHHHHHHHHHHHHH-hhccCCceEEE-
Q 022383 59 IQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSRE--VQALILSPTRELATQTEKVILA-IGDFINIQAHA- 134 (298)
Q Consensus 59 ~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~--~~~lil~p~~~l~~q~~~~~~~-~~~~~~~~~~~- 134 (298)
+-..++..+.+.+-+++-+.||+|||.-+.--+++.+..+..+ ..+.+--|++..+..+++++-+ .....+-.+++
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~ 461 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYN 461 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccc
Confidence 3345566677788899999999999988888888887665443 2455555899888888876632 22111111111
Q ss_pred --EEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHh---CCCCccE
Q 022383 135 --CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY---LPPDLQV 209 (298)
Q Consensus 135 --~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~---~~~~~~~ 209 (298)
+.+..+.. .-.|+.||.+-+++++.... ..+..+++||+|..--. .+.+..+++- ..+...+
T Consensus 462 vRf~Sa~prp--------yg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl~v 528 (1282)
T KOG0921|consen 462 VRFDSATPRP--------YGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVD--TDFVLIVLREMISTYRDLRV 528 (1282)
T ss_pred cccccccccc--------ccceeeeccchhhhhhhhcc---cccccccchhhhhhccc--hHHHHHHHHhhhccchhhhh
Confidence 01111111 11588999999999988764 35678999999985222 2222222222 2234555
Q ss_pred EEEEeeCc
Q 022383 210 VLISATLP 217 (298)
Q Consensus 210 v~~SAT~~ 217 (298)
+++|||+.
T Consensus 529 ~lmsatId 536 (1282)
T KOG0921|consen 529 VLMSATID 536 (1282)
T ss_pred hhhhcccc
Confidence 66666654
No 220
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.07 E-value=0.0054 Score=55.52 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=23.5
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEc
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (298)
..+++.||+|+|||... ..+.+.+.....+..++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 45899999999999543 33444443332244667764
No 221
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.06 E-value=0.003 Score=53.78 Aligned_cols=117 Identities=14% Similarity=0.266 Sum_probs=59.5
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhcc-C---CCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDT-S---SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~-~---~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (298)
.+++++|+||.|||...---.-.+-.. + ..-|-+.+-+|...-....+..+-. .++..... ........
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~---~lgaP~~~----~~~~~~~~ 134 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE---ALGAPYRP----RDRVAKLE 134 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH---HhCcccCC----CCCHHHHH
Confidence 589999999999997432111111100 0 1124555566776655555554422 12222111 00000000
Q ss_pred HhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcccc--HHHHHHHHHhCCCC--ccEEEE
Q 022383 147 KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPD--LQVVLI 212 (298)
Q Consensus 147 ~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~--~~~i~~i~~~~~~~--~~~v~~ 212 (298)
.+..++++ --.++++||||+|.++.... +.....+++++.+. ..+|++
T Consensus 135 -------------~~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 135 -------------QQVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred -------------HHHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 11223333 34678999999999876643 34455666666654 344443
No 222
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.0064 Score=53.22 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHhhcC----CcEEEEcCCCCchHHHHH
Q 022383 56 PSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~~----~~~li~~pTG~GKT~~~~ 88 (298)
.+|||...|..+... +-.++.||.|.|||..+.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH
Confidence 579999999988743 258899999999996543
No 223
>PLN03025 replication factor C subunit; Provisional
Probab=97.06 E-value=0.011 Score=51.71 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=25.9
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
...+++|+||+|.+.... +..+...++..+....+++.+
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEEEEe
Confidence 357899999999986543 455566666655555555543
No 224
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.04 E-value=0.0054 Score=48.95 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=32.1
Q ss_pred EEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 73 ~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
+++.||+|+|||...+--+...... +..++|++. .+...++.+.++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~---g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR---GEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC---CCcEEEEEC-CCCHHHHHHHHHHc
Confidence 6899999999996554444443322 456777754 45677777777665
No 225
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.03 E-value=0.0071 Score=54.47 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=22.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEE
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil 107 (298)
.++++.||+|+|||.... .++..+.....+..++++
T Consensus 56 ~~~lI~G~~GtGKT~l~~-~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK-KVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHhcCCcEEEEE
Confidence 679999999999996533 333443332223345555
No 226
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.01 E-value=0.0052 Score=50.70 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCchHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~ 88 (298)
.+.++++.||+|+|||....
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 45789999999999996543
No 227
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.00 E-value=0.01 Score=51.84 Aligned_cols=46 Identities=15% Similarity=0.233 Sum_probs=27.7
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (298)
.++++++.||||+|||.... .+...+... +..++++. ..++..++.
T Consensus 182 ~~~~Lll~G~~GtGKThLa~-aIa~~l~~~--g~~V~y~t-~~~l~~~l~ 227 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSN-CIAKELLDR--GKSVIYRT-ADELIEILR 227 (329)
T ss_pred cCCcEEEECCCCCcHHHHHH-HHHHHHHHC--CCeEEEEE-HHHHHHHHH
Confidence 45899999999999996432 333333332 44565544 445544443
No 228
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0062 Score=55.55 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.3
Q ss_pred cEEEEcCCCCchHHHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIALT 90 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~ 90 (298)
.++++||.|+|||.++.+.
T Consensus 42 a~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3799999999999765533
No 229
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=96.99 E-value=0.0071 Score=55.36 Aligned_cols=108 Identities=13% Similarity=0.255 Sum_probs=58.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhc
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (298)
..+++.|++|+|||... ..+.+.+.....+.+++++.+ .++..++...+..-.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l~~~~------------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAVDILQKTH------------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHHHHhh-------------------------
Confidence 45899999999999432 344444443333456776655 556655555443210
Q ss_pred CCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc-ccHHHHHHHHHhCC-CCccEEEEEeeCch
Q 022383 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLP-PDLQVVLISATLPH 218 (298)
Q Consensus 151 ~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~-~~~~~i~~i~~~~~-~~~~~v~~SAT~~~ 218 (298)
+.+..+.. .+.+.+++|+||+|.+... .....+..++..+. ...|+|+.|-..|.
T Consensus 195 ---------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~ 251 (450)
T PRK14087 195 ---------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPE 251 (450)
T ss_pred ---------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 01111111 1346789999999987432 23344555555543 33455554444443
No 230
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.98 E-value=0.0091 Score=57.11 Aligned_cols=67 Identities=22% Similarity=0.301 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHhhcC-----CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 022383 55 KPSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~-----~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (298)
.|+--|..++..+.++ +..++.|.||||||+...- ++..+ +..+|||+|++.+|.|+++.++.+...
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~-~~~~~-----~~p~Lvi~~n~~~A~ql~~el~~f~p~ 80 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMAN-VIAQV-----NRPTLVIAHNKTLAAQLYNEFKEFFPE 80 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHH-HHHHh-----CCCEEEEECCHHHHHHHHHHHHHhCCC
Confidence 3888899888887543 3667999999999977543 33322 225899999999999999999988643
No 231
>PRK12377 putative replication protein; Provisional
Probab=96.98 E-value=0.0049 Score=51.59 Aligned_cols=46 Identities=9% Similarity=0.240 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (298)
..++++.||+|+|||... .++.+.+... +..+++ ++..++..++..
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~~--g~~v~~-i~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLAK--GRSVIV-VTVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHc--CCCeEE-EEHHHHHHHHHH
Confidence 368999999999999432 2333444332 334444 455566666554
No 232
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=96.97 E-value=0.013 Score=56.65 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=80.6
Q ss_pred CCcEEEEcCCCCchHH---HHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC----CceEEEEEcCCc--
Q 022383 70 GRDVIAQAQSGTGKTS---MIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI----NIQAHACVGGKS-- 140 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~---~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~----~~~~~~~~~~~~-- 140 (298)
|-..|+.-=.|-|||+ +|+..++.+... .-.++|||||... +..+...|.++...+ .+.+.-+..-..
T Consensus 696 GsGcILAHcMGLGKTlQVvtflhTvL~c~kl--g~ktaLvV~PlNt-~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e 772 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQVVTFLHTVLLCDKL--GFKTALVVCPLNT-ALNWMNEFEKWMEGLEDDEKLEVSELATVKRPE 772 (1567)
T ss_pred CcchHHHHhhcccceehhhHHHHHHHHhhcc--CCceEEEEcchHH-HHHHHHHHHHhcccccccccceeehhhhccChH
Confidence 4456776779999995 344444444332 2238999999765 566777888887642 234433332222
Q ss_pred -hHHHHHHhhcCCcEEEeChHHHHHHHhcc-------------CccCCCccEEEechhhHhhccccHHHHHHHHHhCCCC
Q 022383 141 -VGEDIRKLEHGVHVVSGTPGRVCDMIKRK-------------TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD 206 (298)
Q Consensus 141 -~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~-------------~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~ 206 (298)
.......+.+.-.|.|.-.+.+-.+.... .+--...++||.||+|.+-.. ...+...+..+. .
T Consensus 773 ~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~ir-t 849 (1567)
T KOG1015|consen 773 ERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSIR-T 849 (1567)
T ss_pred HHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHHH-h
Confidence 22233444433355555544443332221 111256799999999998544 233333333333 2
Q ss_pred ccEEEEEeeC-chhHHH
Q 022383 207 LQVVLISATL-PHEILE 222 (298)
Q Consensus 207 ~~~v~~SAT~-~~~~~~ 222 (298)
.+.|++|.|+ .+.+..
T Consensus 850 kRRI~LTGTPLQNNLmE 866 (1567)
T KOG1015|consen 850 KRRIILTGTPLQNNLME 866 (1567)
T ss_pred heeEEeecCchhhhhHH
Confidence 3356677775 444333
No 233
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=96.97 E-value=0.0071 Score=55.36 Aligned_cols=148 Identities=16% Similarity=0.159 Sum_probs=86.9
Q ss_pred CCChHHHHHHHHHhhc------C----CcEEEEcCCCCchHHHHH-HHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHH
Q 022383 54 EKPSAIQQRAVMPIIK------G----RDVIAQAQSGTGKTSMIA-LTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~------~----~~~li~~pTG~GKT~~~~-~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 122 (298)
..+-|||.-++-.+.. | +..+|..|-+-|||.... +.....+.....+....|++|+.+-+.+.++.++
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar 139 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPAR 139 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHH
Confidence 3589999999988871 1 468999999999995433 3333333333456678899999999999988887
Q ss_pred HhhccCCceEEEEEcCCchHHHHHHhh-cCCcEEEeChHHHHHHHhc--cCccCCCccEEEechhhHhhccccHHHHHHH
Q 022383 123 AIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199 (298)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~~~~--~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i 199 (298)
.+..... +.. ....+. +...|...--......+.. +..+-.+..+.|+||.|.....+ ..+..+
T Consensus 140 ~mv~~~~----------~l~-~~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~~~~~ 206 (546)
T COG4626 140 DMVKRDD----------DLR-DLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DMYSEA 206 (546)
T ss_pred HHHHhCc----------chh-hhhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HHHHHH
Confidence 6643322 000 000010 1111222111112222222 34566788999999999976552 344444
Q ss_pred HHhC--CCCccEEEEEe
Q 022383 200 YRYL--PPDLQVVLISA 214 (298)
Q Consensus 200 ~~~~--~~~~~~v~~SA 214 (298)
..-+ +++.+++.+|.
T Consensus 207 ~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 207 KGGLGARPEGLVVYITT 223 (546)
T ss_pred HhhhccCcCceEEEEec
Confidence 3333 24667777665
No 234
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.94 E-value=0.0041 Score=56.14 Aligned_cols=135 Identities=16% Similarity=0.206 Sum_probs=76.7
Q ss_pred cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHH-HHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhc
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE-LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (298)
-.++.|+.|||||.+....++..+.....+.+++++-++.. +...+...+.......++....-....+. .. .+.+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i-~~~~ 79 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI-KILN 79 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE-EecC
Confidence 35788999999998887777766655323457888888776 77778887776655545432111111110 00 0111
Q ss_pred -CCcEEEeCh-HHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCC--CCccEEEEEeeCch
Q 022383 151 -GVHVVSGTP-GRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP--PDLQVVLISATLPH 218 (298)
Q Consensus 151 -~~~ilV~Tp-~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~--~~~~~v~~SAT~~~ 218 (298)
+..|++..- +....+. ....++++.+||+..+... .+..+...++ .....+++|.++..
T Consensus 80 ~g~~i~f~g~~d~~~~ik-----~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 80 TGKKFIFKGLNDKPNKLK-----SGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred CCeEEEeecccCChhHhh-----CcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCC
Confidence 345555443 2222211 1233689999999987433 3344444443 22224788888754
No 235
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.93 E-value=0.018 Score=45.01 Aligned_cols=44 Identities=16% Similarity=0.356 Sum_probs=32.2
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCch
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPH 218 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~ 218 (298)
...+++||||+|.|... -...+.+.++.-+.+..++++|..+..
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 57899999999998554 366777788887777877777766543
No 236
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.92 E-value=0.012 Score=53.80 Aligned_cols=45 Identities=11% Similarity=0.278 Sum_probs=26.5
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 117 (298)
..+++.||+|+|||... ..+.+.+.....+.+++|+.. ..+..++
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~~~~~v~yi~~-~~f~~~~ 175 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITS-EKFLNDL 175 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHH
Confidence 46999999999999543 234444433323446777653 3333333
No 237
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.92 E-value=0.012 Score=51.38 Aligned_cols=40 Identities=18% Similarity=0.401 Sum_probs=27.1
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEe
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SA 214 (298)
....+||+||+|.|... -...+...+..-+.+..+++.+-
T Consensus 108 ~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEcC
Confidence 67899999999998653 34555555555555665555544
No 238
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.91 E-value=0.017 Score=54.67 Aligned_cols=39 Identities=10% Similarity=0.264 Sum_probs=26.0
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
.+.+++||||+|++.... ...+.++++.-+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEEEEE
Confidence 456899999999985544 345556666655556555544
No 239
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.0029 Score=58.05 Aligned_cols=149 Identities=15% Similarity=0.208 Sum_probs=80.6
Q ss_pred EEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh-h-ccCCceEEEEEcCCchH----HHHHHh
Q 022383 75 AQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI-G-DFINIQAHACVGGKSVG----EDIRKL 148 (298)
Q Consensus 75 i~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~-~-~~~~~~~~~~~~~~~~~----~~~~~~ 148 (298)
+.+.||||||++.+-.|+.....+ ...-|+.|.....++-+...+..- . +.+ ..-.+..++.... .....-
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg--yr~flffvnq~nilekt~~nftd~~s~kyl-f~e~i~~~d~~i~ikkvn~fseh 78 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG--YRNFLFFVNQANILEKTKLNFTDSVSSKYL-FSENININDENIEIKKVNNFSEH 78 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc--hhhEEEEecchhHHHHHHhhcccchhhhHh-hhhhhhcCCceeeeeeecccCcc
Confidence 568899999999888888887664 335678887766666655443210 0 000 0000111111100 000112
Q ss_pred hcCCcEEEeChHHHHHHHhcc---C---ccCCCccE-EEechhhHhhccc---------cHHHHHHHHHh---CCCCccE
Q 022383 149 EHGVHVVSGTPGRVCDMIKRK---T---LRTRAIKL-LVLDESDEMLSRG---------FKDQIYDVYRY---LPPDLQV 209 (298)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~~~~~---~---~~~~~l~~-vViDE~h~~~~~~---------~~~~i~~i~~~---~~~~~~~ 209 (298)
.++..|..+|.+.|...+.+. . .++.+..+ ++-||+|++-... -...++..+.. -.+..-+
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~ 158 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLL 158 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCcee
Confidence 345789999999998876542 2 23444444 5669999985431 11122222111 1234557
Q ss_pred EEEEeeCchhHHHHHHhc
Q 022383 210 VLISATLPHEILEMTTKF 227 (298)
Q Consensus 210 v~~SAT~~~~~~~~~~~~ 227 (298)
+.+|||.+.. .+....|
T Consensus 159 lef~at~~k~-k~v~~ky 175 (812)
T COG3421 159 LEFSATIPKE-KSVEDKY 175 (812)
T ss_pred ehhhhcCCcc-ccHHHHh
Confidence 7899999843 4444444
No 240
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.032 Score=51.35 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=24.9
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
.+.+++||||+|.+.... .+.+.+.++.-++...+|+.+
T Consensus 115 ~~~KVvIIDEah~Ls~~A-~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSA-FNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChHhCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 578899999999985543 234444555555555555544
No 241
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.87 E-value=0.01 Score=49.48 Aligned_cols=37 Identities=8% Similarity=0.240 Sum_probs=22.2
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (298)
+..+++.||+|+|||.... .+.+.+... +.+++|+.-
T Consensus 45 ~~~l~l~Gp~G~GKThLl~-a~~~~~~~~--~~~v~y~~~ 81 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLH-AACAELSQR--GRAVGYVPL 81 (235)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHhC--CCeEEEEEH
Confidence 4689999999999995433 222222221 345666543
No 242
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.85 E-value=0.008 Score=50.62 Aligned_cols=67 Identities=15% Similarity=0.306 Sum_probs=40.7
Q ss_pred CCCCChHHHHHHHHHhh-------cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHH
Q 022383 52 GFEKPSAIQQRAVMPII-------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (298)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~-------~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 122 (298)
.|......+..++..+. ++.++++.||+|+|||..+.- +-+.+.. .+ .-++.+++.+++.++...+.
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~A-i~~~l~~--~g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIA-IGNELLK--AG-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHH-HHHHHHH--cC-CeEEEEEHHHHHHHHHHHHh
Confidence 34444444555443332 678999999999999965432 2233332 23 34556677888888777543
No 243
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.85 E-value=0.0033 Score=60.68 Aligned_cols=68 Identities=18% Similarity=0.153 Sum_probs=53.2
Q ss_pred ChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC-CCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 022383 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSPTRELATQTEKVILAIG 125 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~-~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (298)
+++-|.+++.+ ...+++|.|+.|||||.+..--+...+... -...++++|+.|+..+.++.+++.+..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 78889998864 356899999999999988666666666432 234478999999999999999987654
No 244
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.84 E-value=0.017 Score=42.95 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=13.7
Q ss_pred CccEEEechhhHhhccc
Q 022383 175 AIKLLVLDESDEMLSRG 191 (298)
Q Consensus 175 ~l~~vViDE~h~~~~~~ 191 (298)
...+++|||+|.+....
T Consensus 58 ~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp TSEEEEEETGGGTSHHC
T ss_pred cceeeeeccchhccccc
Confidence 35899999999986554
No 245
>PRK08116 hypothetical protein; Validated
Probab=96.83 E-value=0.012 Score=50.03 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=27.0
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (298)
..+++.|++|+|||..+. ++.+.+... +..++++ +..++...+..
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~--~~~v~~~-~~~~ll~~i~~ 159 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK--GVPVIFV-NFPQLLNRIKS 159 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc--CCeEEEE-EHHHHHHHHHH
Confidence 359999999999995433 344554433 3344444 44555555444
No 246
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0098 Score=54.12 Aligned_cols=59 Identities=10% Similarity=0.317 Sum_probs=37.8
Q ss_pred cCCCccEEEechhhHhhcc-c--------cHHHHHHHHHhCC-----CCccEEEEEeeCchhHHHHHHhcCCCCEEEE
Q 022383 172 RTRAIKLLVLDESDEMLSR-G--------FKDQIYDVYRYLP-----PDLQVVLISATLPHEILEMTTKFMTDPVKIL 235 (298)
Q Consensus 172 ~~~~l~~vViDE~h~~~~~-~--------~~~~i~~i~~~~~-----~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~ 235 (298)
.-+.++.|||||+|.+... | .-..+..++.+.. ++.-+|+||-- .+++...+..|..+.
T Consensus 321 ~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR-----~DlIDEALLRPGRlE 393 (744)
T KOG0741|consen 321 ANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNR-----KDLIDEALLRPGRLE 393 (744)
T ss_pred ccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCc-----hhhHHHHhcCCCceE
Confidence 3468899999999998643 1 2345666776664 46667777544 455555555665443
No 247
>PF13173 AAA_14: AAA domain
Probab=96.82 E-value=0.03 Score=41.78 Aligned_cols=38 Identities=16% Similarity=0.347 Sum_probs=25.8
Q ss_pred CccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEee
Q 022383 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (298)
Q Consensus 175 ~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT 215 (298)
.-.+|++||+|.+. ++...+..+.+.. ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEEEEccc
Confidence 45689999999984 4567777777755 45666554443
No 248
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.82 E-value=0.012 Score=57.28 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=25.2
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~ 212 (298)
.+.+++||||+|+|.... ...+.++++.-+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 467899999999985433 44455566655555655554
No 249
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.81 E-value=0.01 Score=56.87 Aligned_cols=40 Identities=15% Similarity=0.359 Sum_probs=26.2
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEe
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SA 214 (298)
.+.+++||||+|.|.... .+.+.++++.-+.+..+|+.|-
T Consensus 118 gr~KVIIIDEah~LT~~A-~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA-FNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHH-HHHHHHHHHhcCCCeEEEEEEC
Confidence 467899999999986544 3444455666555565555443
No 250
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.81 E-value=0.018 Score=48.84 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 578999999999996543
No 251
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=96.79 E-value=0.024 Score=45.03 Aligned_cols=107 Identities=14% Similarity=0.130 Sum_probs=60.6
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (298)
|+=.++++|+.||||...+..+-+.-.. +.++++..|-.. .+.+...+...-|...
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~---g~~v~vfkp~iD-------------~R~~~~~V~Sr~G~~~-------- 59 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEA---GMKVLVFKPAID-------------TRYGVGKVSSRIGLSS-------- 59 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHc---CCeEEEEecccc-------------cccccceeeeccCCcc--------
Confidence 3446889999999998644443333222 446777777421 1112222222222221
Q ss_pred cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCC
Q 022383 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (298)
Q Consensus 150 ~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~ 204 (298)
.-+.|-.+..+...+....... .+++|.|||++.+ +...-..+..+.+.+.
T Consensus 60 --~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~-~~~~v~~l~~lad~lg 110 (201)
T COG1435 60 --EAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFF-DEELVYVLNELADRLG 110 (201)
T ss_pred --cceecCChHHHHHHHHhcccCC-CcCEEEEehhHhC-CHHHHHHHHHHHhhcC
Confidence 2455666666777666543333 2899999999875 3344556666666653
No 252
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.78 E-value=0.044 Score=50.33 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCCchHHHHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIALTV 91 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~ 91 (298)
|+-+.++||||+|||.+....+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHH
Confidence 4568899999999998765444
No 253
>PRK06893 DNA replication initiation factor; Validated
Probab=96.78 E-value=0.008 Score=49.87 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=28.5
Q ss_pred CCccEEEechhhHhhcc-ccHHHHHHHHHhCC-CCccEEEEEeeCchh
Q 022383 174 RAIKLLVLDESDEMLSR-GFKDQIYDVYRYLP-PDLQVVLISATLPHE 219 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~-~~~~~i~~i~~~~~-~~~~~v~~SAT~~~~ 219 (298)
.+.+++|+||+|.+... .....+..+++... ...+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 46689999999987533 23334445555443 245567788876543
No 254
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.78 E-value=0.093 Score=48.58 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=17.1
Q ss_pred cCCcEEEEcCCCCchHHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIAL 89 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~ 89 (298)
.|+.+.++||+|+|||.....
T Consensus 349 ~G~vIaLVGPtGvGKTTtaak 369 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAK 369 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467889999999999976543
No 255
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.78 E-value=0.025 Score=49.67 Aligned_cols=39 Identities=8% Similarity=0.234 Sum_probs=25.6
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
...++||+||+|.+... ....+..+++..+...++|+.+
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45679999999987433 3445566666666666665544
No 256
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.77 E-value=0.023 Score=51.62 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=22.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (298)
..++++|++|+|||......+. .+... +.+++++..
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~-~L~~~--g~kV~lV~~ 131 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLAR-YFKKK--GLKVGLVAA 131 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHHc--CCeEEEecC
Confidence 3588999999999976554332 23322 345666653
No 257
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.74 E-value=0.0014 Score=51.59 Aligned_cols=123 Identities=15% Similarity=0.200 Sum_probs=51.8
Q ss_pred EEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHH-HHHhhcCC
Q 022383 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED-IRKLEHGV 152 (298)
Q Consensus 74 li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 152 (298)
++.|+-|-|||.+.-+.+...+... ..++++.+|+.+-++.+++.+..-.+..+++... ...... .....++.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~--~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~ 74 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG--KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEK----KKRIGQIIKLRFNKQ 74 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC------------------------------CC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc--CceEEEecCCHHHHHHHHHHHHhhcccccccccc----ccccccccccccccc
Confidence 5789999999976544333333332 2478999999999988888665544333332200 000000 00111234
Q ss_pred cEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCc
Q 022383 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 217 (298)
Q Consensus 153 ~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~ 217 (298)
.|-...|+.+... ....+++|||||=.+. ...+..+++.. ..+++|.|..
T Consensus 75 ~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~~----~~vv~stTi~ 124 (177)
T PF05127_consen 75 RIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRRF----PRVVFSTTIH 124 (177)
T ss_dssp C--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEBS
T ss_pred eEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhhC----CEEEEEeecc
Confidence 5555666544421 1234899999996542 34444444333 3677888873
No 258
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.74 E-value=0.012 Score=51.20 Aligned_cols=40 Identities=10% Similarity=0.191 Sum_probs=27.0
Q ss_pred CccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEe
Q 022383 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (298)
Q Consensus 175 ~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SA 214 (298)
..++|||||+|.+........+..+++..+...++|+.+.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4579999999988333345566666777666676666443
No 259
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.72 E-value=0.015 Score=56.94 Aligned_cols=39 Identities=15% Similarity=0.405 Sum_probs=28.0
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
.+.+++||||+|+|.... .+.+.++++..+....+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 567899999999996543 445666677666666666655
No 260
>CHL00181 cbbX CbbX; Provisional
Probab=96.72 E-value=0.014 Score=50.17 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
|.++++.||+|+|||..+-
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4568999999999997654
No 261
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.023 Score=49.82 Aligned_cols=56 Identities=25% Similarity=0.479 Sum_probs=36.1
Q ss_pred cccCcccCCCCHHHHHHHHHC--------CCC------CChHHHHHH------HHHhhcC-----CcEEEEcCCCCchHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQY--------GFE------KPSAIQQRA------VMPIIKG-----RDVIAQAQSGTGKTS 85 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~--------~~~------~~~~~Q~~~------~~~~~~~-----~~~li~~pTG~GKT~ 85 (298)
....|+.++...++.++|+.- .|. ..-..=+++ +|.+.+| +.++..||.|+|||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 556888888888888888661 111 111122222 2334455 789999999999995
Q ss_pred H
Q 022383 86 M 86 (298)
Q Consensus 86 ~ 86 (298)
.
T Consensus 261 L 261 (491)
T KOG0738|consen 261 L 261 (491)
T ss_pred H
Confidence 3
No 262
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.70 E-value=0.0086 Score=52.09 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=41.0
Q ss_pred HHHHCCCCCChHHHHHHHHH-hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHH
Q 022383 47 GIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (298)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (298)
.+.+.|. +++.|...+.. +..+++++++|+||||||.. +-.++..+...+...+++.+=...||
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCCCCceEEEecCCccc
Confidence 4445444 55667766555 45678999999999999953 34555555332233466666666665
No 263
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.70 E-value=0.015 Score=49.56 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=59.1
Q ss_pred HHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHH
Q 022383 65 MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED 144 (298)
Q Consensus 65 ~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (298)
.-+..|.-+++.|++|+|||....-.+.+.... .+..++|++- ..-..++..++........+........ .....
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS~-E~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~~ 100 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTISL-EEPVVRTARRLLGQYAGKRLHLPDTVFI-YTLEE 100 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEEc-ccCHHHHHHHHHHHHhCCCcccCCcccc-ccHHH
Confidence 345567889999999999996444333333222 1446777763 2234555555543322212211000001 11111
Q ss_pred H----HHhhcCCcEEE-e-----ChHHHHHHHhccCccCCCccEEEechhhHhhcc
Q 022383 145 I----RKLEHGVHVVS-G-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (298)
Q Consensus 145 ~----~~~~~~~~ilV-~-----Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~ 190 (298)
. ..+.....+.+ - |++.+...++... .-..+++||||.++.+...
T Consensus 101 ~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~-~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 101 FDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA-VSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEECCHHHHhcc
Confidence 1 12222122322 1 4455555444311 1236789999999988543
No 264
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.70 E-value=0.011 Score=51.04 Aligned_cols=67 Identities=21% Similarity=0.386 Sum_probs=41.4
Q ss_pred HHHHHHHCCCCCChHHHHHHHH-HhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHH
Q 022383 44 LLRGIYQYGFEKPSAIQQRAVM-PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (298)
Q Consensus 44 i~~~l~~~~~~~~~~~Q~~~~~-~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (298)
-.+.|.+.|. +++.|...+. .+..+++++++||||||||.. +-.++..+.......+++.+=...|+
T Consensus 107 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 107 TLDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccCCCceEEEECCchhh
Confidence 3444555453 3444555544 455678999999999999954 44455555442223467777777665
No 265
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.015 Score=54.05 Aligned_cols=39 Identities=15% Similarity=0.378 Sum_probs=26.9
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
.+.+++||||+|++....+ ..+.+.++.-|....+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999999865543 44555666666666666654
No 266
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=96.66 E-value=0.027 Score=53.90 Aligned_cols=158 Identities=15% Similarity=0.210 Sum_probs=94.3
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCC--cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHH
Q 022383 39 GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQ 116 (298)
Q Consensus 39 ~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~--~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q 116 (298)
+.++.....+.....+....-|.+.+..+.+++ -+++.|.-|=|||.+.=+++........ ..++++.+|+.+-++.
T Consensus 198 ~~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~-~~~iiVTAP~~~nv~~ 276 (758)
T COG1444 198 PLDPVFPRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAG-SVRIIVTAPTPANVQT 276 (758)
T ss_pred CCCCCCCHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcC-CceEEEeCCCHHHHHH
Confidence 344444555667666667777777777777553 5888899999999776555422222211 4488999999999999
Q ss_pred HHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHH
Q 022383 117 TEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQI 196 (298)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i 196 (298)
+...+.+-....|++............. .-.+...|=.-+|.... ..-+++|||||=.+ -.+.+
T Consensus 277 Lf~fa~~~l~~lg~~~~v~~d~~g~~~~--~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaI----plplL 340 (758)
T COG1444 277 LFEFAGKGLEFLGYKRKVAPDALGEIRE--VSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAI----PLPLL 340 (758)
T ss_pred HHHHHHHhHHHhCCccccccccccceee--ecCCceeEEeeCcchhc----------ccCCEEEEehhhcC----ChHHH
Confidence 9988877666655443222111100000 00011223344553322 11589999999654 24555
Q ss_pred HHHHHhCCCCccEEEEEeeCc
Q 022383 197 YDVYRYLPPDLQVVLISATLP 217 (298)
Q Consensus 197 ~~i~~~~~~~~~~v~~SAT~~ 217 (298)
..+++.. +.++||.|+.
T Consensus 341 ~~l~~~~----~rv~~sTTIh 357 (758)
T COG1444 341 HKLLRRF----PRVLFSTTIH 357 (758)
T ss_pred HHHHhhc----CceEEEeeec
Confidence 5555554 3688999984
No 267
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.64 E-value=0.011 Score=53.42 Aligned_cols=33 Identities=21% Similarity=0.361 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHH
Q 022383 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~ 88 (298)
+......++..+..++++++.||+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 455556677778889999999999999996654
No 268
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.62 E-value=0.0058 Score=59.59 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=54.3
Q ss_pred CCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCC-CCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 022383 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIGD 126 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (298)
..+++-|.+++.+ ...+++|.|+.|||||.+..--+...+.... ...+++.++-|+.-+.++.+++.++..
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 4589999999875 3578999999999999876555555443322 234799999999999999999887643
No 269
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.018 Score=54.31 Aligned_cols=41 Identities=15% Similarity=0.365 Sum_probs=26.9
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEee
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT 215 (298)
.+.+++||||+|+|....+ +.+.+.++.-+.+..+|+.|-.
T Consensus 123 gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeCC
Confidence 4678999999999865543 3344455554556666666543
No 270
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.60 E-value=0.021 Score=52.15 Aligned_cols=48 Identities=15% Similarity=0.430 Sum_probs=27.3
Q ss_pred CCccEEEechhhHhhccc-cHHHHHHHHHhC-CCCccEEEEEeeCchhHH
Q 022383 174 RAIKLLVLDESDEMLSRG-FKDQIYDVYRYL-PPDLQVVLISATLPHEIL 221 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~-~~~~i~~i~~~~-~~~~~~v~~SAT~~~~~~ 221 (298)
...++++|||+|.+.... ....+..++..+ ....++++.|.+.|..+.
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 367899999999975432 234444444433 234555555544454443
No 271
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.58 E-value=0.019 Score=53.93 Aligned_cols=107 Identities=17% Similarity=0.250 Sum_probs=56.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhc
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (298)
..+++.|++|+|||.. +..+.+.+.....+.+++|+. ..+++++....++.-
T Consensus 315 NpL~LyG~sGsGKTHL-L~AIa~~a~~~~~g~~V~Yit-aeef~~el~~al~~~-------------------------- 366 (617)
T PRK14086 315 NPLFIYGESGLGKTHL-LHAIGHYARRLYPGTRVRYVS-SEEFTNEFINSIRDG-------------------------- 366 (617)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHHHhCCCCeEEEee-HHHHHHHHHHHHHhc--------------------------
Confidence 3489999999999953 223344433322344566654 344555444322210
Q ss_pred CCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc-cHHHHHHHHHhCCC-CccEEEEEeeCchh
Q 022383 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYLPP-DLQVVLISATLPHE 219 (298)
Q Consensus 151 ~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~-~~~~i~~i~~~~~~-~~~~v~~SAT~~~~ 219 (298)
..+.+.. .+.++++|||||+|.+.... ....+..+++.+.. +.++|+.|-..+..
T Consensus 367 -------~~~~f~~-------~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~e 423 (617)
T PRK14086 367 -------KGDSFRR-------RYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 423 (617)
T ss_pred -------cHHHHHH-------HhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHh
Confidence 0011111 13457899999999875432 23444455555433 46666655444443
No 272
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.57 E-value=0.018 Score=47.70 Aligned_cols=43 Identities=7% Similarity=0.254 Sum_probs=25.6
Q ss_pred CccEEEechhhHhhccccHHHHHHHHHhCCCC-ccEEEEEeeCch
Q 022383 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPD-LQVVLISATLPH 218 (298)
Q Consensus 175 ~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~-~~~v~~SAT~~~ 218 (298)
..+++||||+|.+..+ ....+..+++..... ..+++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4578999999987433 344454555444323 335667776543
No 273
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.57 E-value=0.032 Score=53.11 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=25.3
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~ 212 (298)
.+.+++||||+|+|.... .+.+.++++.-+....+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHS-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHH-HHHHHHHHHcCCCCeEEEEe
Confidence 467899999999986544 44444566665555555554
No 274
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.57 E-value=0.029 Score=59.00 Aligned_cols=64 Identities=25% Similarity=0.301 Sum_probs=45.2
Q ss_pred CCChHHHHHHHHHhhcC--CcEEEEcCCCCchHHHHHHHHHHhhc--cCCCCeEEEEEcCcHHHHHHHH
Q 022383 54 EKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVD--TSSREVQALILSPTRELATQTE 118 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~--~~~li~~pTG~GKT~~~~~~~~~~~~--~~~~~~~~lil~p~~~l~~q~~ 118 (298)
..+++.|.+++..++.+ +-++|.|..|+|||... -.++..+. ....+..++.++||-.-+..+.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHHH
Confidence 35899999999998864 57899999999999653 22222222 1223457888999987666543
No 275
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.028 Score=48.92 Aligned_cols=141 Identities=17% Similarity=0.174 Sum_probs=69.3
Q ss_pred CCCChHHHHHHHHHhh----cCC---cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh-
Q 022383 53 FEKPSAIQQRAVMPII----KGR---DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI- 124 (298)
Q Consensus 53 ~~~~~~~Q~~~~~~~~----~~~---~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~- 124 (298)
+..++|||..+|..+. +|+ -.++.||.|.||+..+.. +...+......... -|+ .++.+
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~LlC~~~~~~~--~c~----------~c~~~~ 68 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVLASGPDPAA--AQR----------TRQLIA 68 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHhCCCCCCCC--cch----------HHHHHh
Confidence 3568999999998865 343 489999999999965432 22222221111000 111 12222
Q ss_pred -hccCCceEEEEEc-CCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHh
Q 022383 125 -GDFINIQAHACVG-GKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY 202 (298)
Q Consensus 125 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~ 202 (298)
+...++....... +...+ ....|.|-....+...+..... ....+++|||++|.|.... ...+.++++-
T Consensus 69 ~g~HPD~~~i~~~p~~~~~k-------~~~~I~idqIR~l~~~~~~~p~-~g~~kV~iI~~ae~m~~~A-aNaLLKtLEE 139 (319)
T PRK08769 69 AGTHPDLQLVSFIPNRTGDK-------LRTEIVIEQVREISQKLALTPQ-YGIAQVVIVDPADAINRAA-CNALLKTLEE 139 (319)
T ss_pred cCCCCCEEEEecCCCccccc-------ccccccHHHHHHHHHHHhhCcc-cCCcEEEEeccHhhhCHHH-HHHHHHHhhC
Confidence 2223433331110 00000 0001222122222222222211 2467899999999995443 4555566666
Q ss_pred CCCCccEEEEEee
Q 022383 203 LPPDLQVVLISAT 215 (298)
Q Consensus 203 ~~~~~~~v~~SAT 215 (298)
-+.+..+|++|..
T Consensus 140 Pp~~~~fiL~~~~ 152 (319)
T PRK08769 140 PSPGRYLWLISAQ 152 (319)
T ss_pred CCCCCeEEEEECC
Confidence 6666666666653
No 276
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.55 E-value=0.019 Score=51.14 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=17.6
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhh
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTV 95 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~ 95 (298)
.++++.||+|+|||... ..++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 58999999999999653 3344443
No 277
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.029 Score=50.55 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIAL 89 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~ 89 (298)
|+-+.++||||+|||.....
T Consensus 191 g~vi~lvGpnG~GKTTtlak 210 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAK 210 (420)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45689999999999976543
No 278
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.54 E-value=0.021 Score=49.05 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
+.++++.||+|+|||..+
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999765
No 279
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.52 E-value=0.021 Score=47.61 Aligned_cols=53 Identities=15% Similarity=0.226 Sum_probs=36.6
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (298)
.|..+++.||+|+|||.-.+-.+...+.. +..++|++ +.+-..++.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 45789999999999997554444444432 45678877 4566777777776654
No 280
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.52 E-value=0.038 Score=42.84 Aligned_cols=53 Identities=28% Similarity=0.538 Sum_probs=41.4
Q ss_pred CCCccEEEechhhHhhcccc--HHHHHHHHHhCCCCccEEEEEeeCchhHHHHHH
Q 022383 173 TRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 225 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~--~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~ 225 (298)
...++++|+||+-.....++ ...+..+++..|...-+|+.+-..|+.+.+...
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 46789999999988766664 567778888888888888887788877766544
No 281
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.49 E-value=0.072 Score=52.06 Aligned_cols=28 Identities=18% Similarity=0.674 Sum_probs=18.7
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHh
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRY 202 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~ 202 (298)
....+||+||+|.+.... ...+..+++.
T Consensus 868 r~v~IIILDEID~L~kK~-QDVLYnLFR~ 895 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITKT-QKVLFTLFDW 895 (1164)
T ss_pred ccceEEEeehHhhhCccH-HHHHHHHHHH
Confidence 456789999999987542 3444445544
No 282
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.49 E-value=0.017 Score=57.55 Aligned_cols=149 Identities=15% Similarity=0.071 Sum_probs=90.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccC-----------C----CCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEE
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTS-----------S----REVQALILSPTRELATQTEKVILAIGDFINIQAH 133 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~-----------~----~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~ 133 (298)
.|+.++..-..|+|||.+-+...+...... . ..+-+|||||. ++..|+...+.+-.... +.+.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 356778888899999988766554433110 0 12468999995 67789998887765443 6777
Q ss_pred EEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhcc--------------CccC----CCccE--EEechhhHhhccccH
Q 022383 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--------------TLRT----RAIKL--LVLDESDEMLSRGFK 193 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~--------------~~~~----~~l~~--vViDE~h~~~~~~~~ 193 (298)
.+.|-.............+||+++|-..|..-+... ..+. -.+.+ |++||+.++.. -.
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hH
Confidence 776643322221233346899999998887644321 1111 11111 89999988744 34
Q ss_pred HHHHHHHHhCCCCccEEEEEeeCchhHHH
Q 022383 194 DQIYDVYRYLPPDLQVVLISATLPHEILE 222 (298)
Q Consensus 194 ~~i~~i~~~~~~~~~~v~~SAT~~~~~~~ 222 (298)
........+++ ....-.+|.|+-..+.+
T Consensus 529 S~~a~M~~rL~-~in~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 529 SAAAEMVRRLH-AINRWCVTGTPIQKIDD 556 (1394)
T ss_pred HHHHHHHHHhh-hhceeeecCCchhhhhh
Confidence 55555666664 34467788996443444
No 283
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.48 E-value=0.048 Score=43.64 Aligned_cols=39 Identities=13% Similarity=0.416 Sum_probs=24.1
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
....++||||+|.+.... ...+...++.-++..-+|+++
T Consensus 95 ~~~kviiide~~~l~~~~-~~~Ll~~le~~~~~~~~il~~ 133 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAA-ANALLKTLEEPPPNTLFILIT 133 (188)
T ss_pred CCeEEEEEechhhhCHHH-HHHHHHHhcCCCCCeEEEEEE
Confidence 567899999999985432 344445555544444455443
No 284
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.47 E-value=0.02 Score=59.45 Aligned_cols=63 Identities=22% Similarity=0.291 Sum_probs=45.6
Q ss_pred CChHHHHHHHHHhhcC--CcEEEEcCCCCchHHHH--HHHHHHhhccCCCCeEEEEEcCcHHHHHHHH
Q 022383 55 KPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMI--ALTVCQTVDTSSREVQALILSPTRELATQTE 118 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~--~~~li~~pTG~GKT~~~--~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (298)
.+++-|.+++..++.. +-++|.|..|+|||... ++.++..+.. ..+..++.++||-.-+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e-~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE-SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh-ccCceEEEEechHHHHHHHH
Confidence 6899999999998854 77999999999999763 2222332222 23457888999987766654
No 285
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.47 E-value=0.056 Score=44.88 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=33.9
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
+..|.-+++.|++|+|||...+-.+...+.. +.++++++ +.+-..+..+.+..+
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~---g~~~~yi~-~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQN---GYSVSYVS-TQLTTTEFIKQMMSL 74 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhC---CCcEEEEe-CCCCHHHHHHHHHHh
Confidence 3457789999999999996543333333222 45678888 444445655555544
No 286
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.037 Score=50.96 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=14.7
Q ss_pred cEEEEcCCCCchHHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIAL 89 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~ 89 (298)
.+++.||.|+|||..+..
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999976543
No 287
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.033 Score=53.76 Aligned_cols=131 Identities=15% Similarity=0.153 Sum_probs=61.7
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (298)
++-+.++||||+|||.+....+-...... .+.++.++.-...-+- ..++++.++...++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~-G~kkV~lit~Dt~Rig-A~eQL~~~a~~~gvpv~---------------- 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE-GADQLALLTTDSFRIG-ALEQLRIYGRILGVPVH---------------- 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc-CCCeEEEecCcccchH-HHHHHHHHHHhCCCCcc----------------
Confidence 34578999999999977654433221111 1224555543222100 12333344434444322
Q ss_pred cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc-ccHHHHHHHHHhCCCCccEEEEEeeCch-hHHHHHHhc
Q 022383 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPH-EILEMTTKF 227 (298)
Q Consensus 150 ~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~-~~~~~i~~i~~~~~~~~~~v~~SAT~~~-~~~~~~~~~ 227 (298)
.+.+|+.+...+.. +.+.++|+||=+=+.... .....+..+.+...+...++.+|||... .+.+....|
T Consensus 247 -----~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 247 -----AVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred -----ccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 12245454444442 234467777765433211 1233333333333344556777888643 333344444
No 288
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=96.42 E-value=0.016 Score=54.53 Aligned_cols=136 Identities=14% Similarity=0.140 Sum_probs=81.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC-CceEEEEEcCCchHHHHHHh
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKL 148 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 148 (298)
.+-.++..|--.|||+... +++..+...-.+.++++.+|.+..++.+++.+....+.. .-...-...|... .-..
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~I---~i~f 329 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGETI---SFSF 329 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcEE---EEEe
Confidence 3678899999999997655 555554444347799999999999999999887764321 1111111111100 0011
Q ss_pred hcC--CcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCch
Q 022383 149 EHG--VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPH 218 (298)
Q Consensus 149 ~~~--~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~ 218 (298)
.++ ..|.+.+- -+.+...-..++++|||||+.+-+..+...+-.+.. .+.++|++|.|-+.
T Consensus 330 ~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~~---~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 330 PDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQ---TNCKIIFVSSTNTG 392 (738)
T ss_pred cCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHHHHHHHHHHHhc---cCccEEEEecCCCC
Confidence 112 23444321 122345556889999999998855444433322222 37889999998643
No 289
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.41 E-value=0.016 Score=50.56 Aligned_cols=66 Identities=20% Similarity=0.352 Sum_probs=42.4
Q ss_pred HHHHHHCCCCCChHHHHHHHHH-hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHH
Q 022383 45 LRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (298)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (298)
+..|.+.|. +++.|.+.+.. +..+++++++|+||+||| .++-.++..+.......+++.+-.+.|+
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 445555554 45667777664 557889999999999999 4445555544222223467776676665
No 290
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=96.41 E-value=0.056 Score=47.02 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=25.0
Q ss_pred CccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 175 ~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
..++|++||+|.+.... ...+..+++..+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEe
Confidence 45799999999875432 445556666666666666644
No 291
>PRK09183 transposase/IS protein; Provisional
Probab=96.40 E-value=0.015 Score=49.10 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=17.9
Q ss_pred hhcCCcEEEEcCCCCchHHHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~ 88 (298)
+..|.++++.||+|+|||....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 4467899999999999995433
No 292
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.04 Score=48.23 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHhhc--CC---cEEEEcCCCCchHHHHH
Q 022383 56 PSAIQQRAVMPIIK--GR---DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~--~~---~~li~~pTG~GKT~~~~ 88 (298)
.+|||+..|..+.. ++ ..++.||.|.|||..+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 47899999988763 32 58899999999996544
No 293
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.40 E-value=0.031 Score=49.80 Aligned_cols=39 Identities=15% Similarity=0.383 Sum_probs=24.1
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
.+.+++||||+|.+....+ ..+...++.-+....+++.+
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEEc
Confidence 4568999999999854332 23444445445555555544
No 294
>PRK05973 replicative DNA helicase; Provisional
Probab=96.40 E-value=0.04 Score=45.76 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=51.3
Q ss_pred ccCCCCHHHHHHHHHCCCCC----------ChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEE
Q 022383 36 DAMGIKDDLLRGIYQYGFEK----------PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (298)
Q Consensus 36 ~~l~l~~~i~~~l~~~~~~~----------~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~l 105 (298)
...++++.+-+.-.+-||.. ++| ..+...-+..|.-++|.|++|+|||.-.+--+.+.... +.+++
T Consensus 21 ~~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~---Ge~vl 96 (237)
T PRK05973 21 QNIPLHEALDRIAAEEGFSSWSLLAAKAAATTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS---GRTGV 96 (237)
T ss_pred cCCcHHHHHHHHHHHhccchHHHHHHhccCCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc---CCeEE
Confidence 34456666666656666653 344 22233345566789999999999996655444444332 44677
Q ss_pred EEcCcHHHHHHHHHHHHHh
Q 022383 106 ILSPTRELATQTEKVILAI 124 (298)
Q Consensus 106 il~p~~~l~~q~~~~~~~~ 124 (298)
|++- .+-..|+.+++..+
T Consensus 97 yfSl-Ees~~~i~~R~~s~ 114 (237)
T PRK05973 97 FFTL-EYTEQDVRDRLRAL 114 (237)
T ss_pred EEEE-eCCHHHHHHHHHHc
Confidence 7753 33457777777665
No 295
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.38 E-value=0.085 Score=44.94 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=22.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEc
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (298)
+-++++||+|+|||....-.+... .. .+.+++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~--~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KK--QGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hh--cCCEEEEEe
Confidence 467888999999997655444332 22 244666666
No 296
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.37 E-value=0.1 Score=44.27 Aligned_cols=130 Identities=13% Similarity=0.225 Sum_probs=67.7
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC--c-HHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP--T-RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p--~-~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (298)
+..+.+++|+|+|||..+...+... .. .+.++.++.- . .+.+.|+...... .++.+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l-~~--~~~~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~~------------ 135 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF-HG--KKKTVGFITTDHSRIGTVQQLQDYVKT----IGFEVIA------------ 135 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH-HH--cCCeEEEEecCCCCHHHHHHHHHHhhh----cCceEEe------------
Confidence 3678999999999997655433222 22 1334555443 2 2444554443322 2332221
Q ss_pred HhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc-ccHHHHHHHHHhCCCCccEEEEEeeCc-hhHHHHH
Q 022383 147 KLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLP-HEILEMT 224 (298)
Q Consensus 147 ~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~-~~~~~i~~i~~~~~~~~~~v~~SAT~~-~~~~~~~ 224 (298)
..+++.+...+..- -...+.++++||-+=..... .....+..+++...+..-++.+|||.. ..+...+
T Consensus 136 ---------~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~ 205 (270)
T PRK06731 136 ---------VRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEII 205 (270)
T ss_pred ---------cCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHH
Confidence 12344444433221 11236789999987543222 233444455554444444677899874 4666666
Q ss_pred HhcC
Q 022383 225 TKFM 228 (298)
Q Consensus 225 ~~~~ 228 (298)
+.+-
T Consensus 206 ~~f~ 209 (270)
T PRK06731 206 TNFK 209 (270)
T ss_pred HHhC
Confidence 6653
No 297
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.36 E-value=0.045 Score=52.24 Aligned_cols=39 Identities=13% Similarity=0.270 Sum_probs=25.7
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
.+.+++||||+|.+.... ...+.+.+...+....+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 467899999999875433 334555555555666666655
No 298
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.36 E-value=0.011 Score=52.13 Aligned_cols=18 Identities=33% Similarity=0.516 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
.+.|+.||.|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 489999999999996544
No 299
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.35 E-value=0.11 Score=46.95 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=32.3
Q ss_pred cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC--cHHHHHHHHHHHHHhhccCCceEEEEE
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP--TRELATQTEKVILAIGDFINIQAHACV 136 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p--~~~l~~q~~~~~~~~~~~~~~~~~~~~ 136 (298)
-++++|++|+|||....-.+.. +.. .+.++++++. .+.-+. ++++.++...++++....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~-l~~--~G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~ 162 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYY-YQR--KGFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSY 162 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHH--CCCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeec
Confidence 4789999999999665433322 222 2446666664 343333 333344444566654433
No 300
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.31 E-value=0.014 Score=54.80 Aligned_cols=126 Identities=15% Similarity=0.183 Sum_probs=76.1
Q ss_pred CCChHHHHHHHHHhhcC--CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHH-HHHHHhhccC-C
Q 022383 54 EKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE-KVILAIGDFI-N 129 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~--~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~-~~~~~~~~~~-~ 129 (298)
...+|+|.+..+.+.+. +.+.++.++-+|||.+.+..+...+...+. .++++.||.+.+.+.. +++..+.... .
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~--~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~ 92 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPG--PMLYVQPTDDAAKDFSKERLDPMIRASPV 92 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCC--CEEEEEEcHHHHHHHHHHHHHHHHHhCHH
Confidence 35889999999998765 689999999999999766555555555443 6899999999998866 4554443221 1
Q ss_pred ceEEEEEc----CCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhc
Q 022383 130 IQAHACVG----GKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (298)
Q Consensus 130 ~~~~~~~~----~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~ 189 (298)
++- .+.. +....-..+... +-.+.++.... -..+.-..++++++||+|.+..
T Consensus 93 l~~-~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 93 LRR-KLSPSKSRDSGNTILYKRFP-GGFLYLVGANS------PSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred HHH-HhCchhhcccCCchhheecC-CCEEEEEeCCC------CcccccCCcCEEEEechhhccc
Confidence 110 0111 111111112222 22333332211 1233446778999999999843
No 301
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.31 E-value=0.029 Score=53.64 Aligned_cols=125 Identities=18% Similarity=0.130 Sum_probs=76.6
Q ss_pred HHHHHHHHHhhcC-----CcEEEEcCCCCchHHHHHHHHHHh-hccC-----CCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 022383 58 AIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQT-VDTS-----SREVQALILSPTRELATQTEKVILAIGD 126 (298)
Q Consensus 58 ~~Q~~~~~~~~~~-----~~~li~~pTG~GKT~~~~~~~~~~-~~~~-----~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (298)
..|...+-..... +..|+.--.|-|||...+..++.+ .... ......+++||+ .+..|+.+.+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~ 213 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTE 213 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCC
Confidence 4555555443322 457788889999997755444443 3222 134467888885 456777777766666
Q ss_pred cCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc
Q 022383 127 FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (298)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~ 191 (298)
...+.+..++|.. .......+++|+++|+..+.. ..+..-..-.+|+||+|.+....
T Consensus 214 ~~~l~v~v~~gr~----kd~~el~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~ 270 (674)
T KOG1001|consen 214 EDKLSIYVYHGRT----KDKSELNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKD 270 (674)
T ss_pred ccceEEEEecccc----cccchhcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcc
Confidence 6566777777611 122233567899999977774 11111233469999999986554
No 302
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.30 E-value=0.074 Score=42.48 Aligned_cols=140 Identities=17% Similarity=0.201 Sum_probs=77.6
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHH-HHHHHHHHhhccCCceEEEEEcCCc-----h
Q 022383 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT-QTEKVILAIGDFINIQAHACVGGKS-----V 141 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~-q~~~~~~~~~~~~~~~~~~~~~~~~-----~ 141 (298)
..+..+.+.+++|.|||.+++--++..+.. +.+|+++-=.+--.. -=...++++ .++.......+.. .
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~---G~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~~g~~~~~~~~~~ 93 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGH---GKKVGVVQFIKGAWSTGERNLLEFG---GGVEFHVMGTGFTWETQDR 93 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHC---CCeEEEEEEecCCCccCHHHHHhcC---CCcEEEECCCCCcccCCCc
Confidence 356789999999999998877666666655 446666643332110 111112221 1222222111100 0
Q ss_pred HHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcccc--HHHHHHHHHhCCCCccEEEEEeeCchh
Q 022383 142 GEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHE 219 (298)
Q Consensus 142 ~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~--~~~i~~i~~~~~~~~~~v~~SAT~~~~ 219 (298)
.+... .........+ ..+.-..+++||+||+-...+.++ ...+..+++..|...-+|+.--..|++
T Consensus 94 ~e~~~-----------~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~ 161 (191)
T PRK05986 94 ERDIA-----------AAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRE 161 (191)
T ss_pred HHHHH-----------HHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 00000 0011111111 123346789999999988877774 567778888888777777766667777
Q ss_pred HHHHHH
Q 022383 220 ILEMTT 225 (298)
Q Consensus 220 ~~~~~~ 225 (298)
+.+...
T Consensus 162 Lie~AD 167 (191)
T PRK05986 162 LIEAAD 167 (191)
T ss_pred HHHhCc
Confidence 666544
No 303
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.29 E-value=0.061 Score=44.50 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=31.7
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
.|..+++.|++|+|||......+.+.+.. +..+++++- .+...++.+..+.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 46789999999999996544333333322 346777764 34445655554444
No 304
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=96.24 E-value=0.15 Score=40.11 Aligned_cols=138 Identities=17% Similarity=0.258 Sum_probs=66.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHH-HHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcC
Q 022383 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE-LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (298)
Q Consensus 73 ~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (298)
+.+-...|-|||.|++--++..+.. +.+|+++-=.+. --. .....+....++....+-.+..........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~---G~rV~ivQFlKg~~~~---GE~~~l~~l~~~~~~~~g~~f~~~~~~~~~--- 76 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH---GMRVLIVQFLKGGRYS---GELKALKKLPNVEIERFGKGFVWRMNEEEE--- 76 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT---T--EEEEESS--SS-----HHHHHHGGGT--EEEE--TT----GGGHHH---
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC---CCEEEEEEEecCCCCc---CHHHHHHhCCeEEEEEcCCcccccCCCcHH---
Confidence 4566789999999888777776655 557777765554 111 122222211123322211111000000000
Q ss_pred CcEEEeChHHHHHHHhc--cCccCCCccEEEechhhHhhcccc--HHHHHHHHHhCCCCccEEEEEeeCchhHHHHHH
Q 022383 152 VHVVSGTPGRVCDMIKR--KTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 225 (298)
Q Consensus 152 ~~ilV~Tp~~l~~~~~~--~~~~~~~l~~vViDE~h~~~~~~~--~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~ 225 (298)
+ .......+.. ..+.-..+++||+||+-...+.++ ...+..+++..|...-+|+.--..|+.+.+...
T Consensus 77 -~-----~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 77 -D-----RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -H-----HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred -H-----HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 0 1111122221 233456889999999988877764 467778888888888888777777777766654
No 305
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.23 E-value=0.051 Score=49.74 Aligned_cols=89 Identities=19% Similarity=0.224 Sum_probs=51.3
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (298)
.|.-+++.|++|+|||.-.+..+.. ... .+.+++|+.- .+...|+..+.++++...+
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~-~a~--~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~------------------- 135 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAAR-LAA--AGGKVLYVSG-EESASQIKLRAERLGLPSD------------------- 135 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH-HHh--cCCeEEEEEc-cccHHHHHHHHHHcCCChh-------------------
Confidence 3467899999999999644333322 222 2447888874 4455677666655532111
Q ss_pred hcCCcEEEeC---hHHHHHHHhccCccCCCccEEEechhhHhhc
Q 022383 149 EHGVHVVSGT---PGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (298)
Q Consensus 149 ~~~~~ilV~T---p~~l~~~~~~~~~~~~~l~~vViDE~h~~~~ 189 (298)
++.+.. .+.+...+.. .+.++||||+++.+..
T Consensus 136 ----~l~~~~e~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 136 ----NLYLLAETNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred ----cEEEeCCCCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 122222 2333333332 3678999999998764
No 306
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.23 E-value=0.083 Score=41.53 Aligned_cols=53 Identities=21% Similarity=0.454 Sum_probs=41.2
Q ss_pred CCCccEEEechhhHhhcccc--HHHHHHHHHhCCCCccEEEEEeeCchhHHHHHH
Q 022383 173 TRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 225 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~--~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~ 225 (298)
-..+++||+||+-...+.++ ...+..+++..|+...+|+..-..|+.+.+...
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 46789999999988777764 466778888888888888877777877766554
No 307
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.23 E-value=0.013 Score=57.22 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=59.3
Q ss_pred CcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCch
Q 022383 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPH 218 (298)
Q Consensus 152 ~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~ 218 (298)
..|+++||..+..-+-.+.+++..+..+||||||++....-...+.++.+...+..-+.+|||.+..
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 4899999999988888888999999999999999998777778888888888888889999999864
No 308
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.06 Score=48.57 Aligned_cols=40 Identities=10% Similarity=0.224 Sum_probs=23.2
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
.....++||||+|.+.... ...+...++..++...+|+.+
T Consensus 125 ~~~~kvvIIdea~~l~~~~-~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIAA-FNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred cCCeEEEEEeChhhCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 3566899999999985433 233334444444444444443
No 309
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.08 Score=50.15 Aligned_cols=39 Identities=13% Similarity=0.371 Sum_probs=25.4
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
.+.+++||||+|.+.... ...+.+.++.-+....+|+.+
T Consensus 118 ~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEEEe
Confidence 567899999999986443 344555555555555555544
No 310
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.19 E-value=0.07 Score=49.89 Aligned_cols=39 Identities=13% Similarity=0.246 Sum_probs=26.3
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
.+..++||||+|.+.... ...+...++.-+....+|+.+
T Consensus 118 g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 466899999999985543 445556666655566666655
No 311
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.13 Score=45.86 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=19.8
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCC
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~ 204 (298)
...-.||+||+|.+..... ..+-.+++.-.
T Consensus 122 ~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~ 151 (366)
T COG1474 122 GKTVIVILDEVDALVDKDG-EVLYSLLRAPG 151 (366)
T ss_pred CCeEEEEEcchhhhccccc-hHHHHHHhhcc
Confidence 3455899999999977753 44445554443
No 312
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.18 E-value=0.0069 Score=49.44 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=14.0
Q ss_pred CcEEEEcCCCCchHHHH
Q 022383 71 RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~ 87 (298)
.++++.||.|.|||..+
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 37999999999999543
No 313
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.17 E-value=0.049 Score=47.23 Aligned_cols=46 Identities=15% Similarity=0.309 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (298)
++++++.||+|+|||.... ++.+.+.. .+..+.++. ..+++.++..
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~~--~g~~v~~~~-~~~l~~~lk~ 201 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELAK--KGVSSTLLH-FPEFIRELKN 201 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH--cCCCEEEEE-HHHHHHHHHH
Confidence 4689999999999995432 33333332 233444443 2345555443
No 314
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.15 E-value=0.028 Score=60.22 Aligned_cols=63 Identities=32% Similarity=0.420 Sum_probs=45.4
Q ss_pred CCChHHHHHHHHHhhcC--CcEEEEcCCCCchHHHHH---HHHHHhhccCCCCeEEEEEcCcHHHHHHHH
Q 022383 54 EKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIA---LTVCQTVDTSSREVQALILSPTRELATQTE 118 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~--~~~li~~pTG~GKT~~~~---~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (298)
..+++.|..++..++.+ +-++|+|+.|+|||.... -++...... .+..++.++||..-+.++.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~--~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES--EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHHH
Confidence 35899999999998765 567889999999996541 223333332 2557888999977666654
No 315
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.063 Score=50.66 Aligned_cols=39 Identities=13% Similarity=0.355 Sum_probs=25.9
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
.+.+++||||+|.+.... ...+.+.++.-+....+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe
Confidence 567899999999986553 334455555555555555554
No 316
>PRK04195 replication factor C large subunit; Provisional
Probab=96.14 E-value=0.051 Score=50.39 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
.+.+++.||+|+|||...
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999654
No 317
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.14 E-value=0.058 Score=47.06 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=24.5
Q ss_pred ChHHHHHHHHHhh----cCC---cEEEEcCCCCchHHHHH
Q 022383 56 PSAIQQRAVMPII----KGR---DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 56 ~~~~Q~~~~~~~~----~~~---~~li~~pTG~GKT~~~~ 88 (298)
.+|||+..|..+. +|+ -.++.||.|.||+..+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~ 42 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIR 42 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHH
Confidence 4688888887765 443 57799999999996543
No 318
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.13 E-value=0.08 Score=46.85 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=26.9
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEe
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SA 214 (298)
....++||||+|.|.... ...+.+.++.-+.+..++++|.
T Consensus 140 g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISH 179 (351)
T ss_pred CCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEEC
Confidence 467899999999985443 4456666666555565666653
No 319
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.12 E-value=0.094 Score=48.68 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIAL 89 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~ 89 (298)
+.++++||.|+|||.++.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3689999999999976543
No 320
>PTZ00293 thymidine kinase; Provisional
Probab=96.12 E-value=0.056 Score=43.91 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=25.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
|+-.++.||+++|||.-.+..+-+.... +.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~a---g~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYS---EKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHc---CCceEEEEecc
Confidence 5567889999999996544443333222 34677777753
No 321
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.048 Score=51.72 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=23.9
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
.+.+++||||+|+|....+. .+.+.++.-+....+|+.+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEEEE
Confidence 46789999999998655432 3334444444445555544
No 322
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.11 E-value=0.21 Score=47.49 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=80.8
Q ss_pred ChHHHHHHHHHhh---cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC---
Q 022383 56 PSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN--- 129 (298)
Q Consensus 56 ~~~~Q~~~~~~~~---~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~--- 129 (298)
|+|.=.+-++.+. +.+-.++.+|=|.|||.+..+.+...+.. .+.+++|.+|...-+.++++.++......+
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f--~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~ 247 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF--LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKP 247 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh--cCCeEEEECCChhhHHHHHHHHHHHHHHhcccc
Confidence 4555555555544 45678889999999997765444433321 256899999999999999988877665322
Q ss_pred -----ceEEEEEcCCchHHHH--HHhh-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHH
Q 022383 130 -----IQAHACVGGKSVGEDI--RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR 201 (298)
Q Consensus 130 -----~~~~~~~~~~~~~~~~--~~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~ 201 (298)
-.+....|+...-... .... ++..+..++-. .+...-...+++|+|||..+... .+..++-
T Consensus 248 ~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~~----~l~aIlP 316 (752)
T PHA03333 248 WFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNPG----ALLSVLP 316 (752)
T ss_pred ccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCHH----HHHHHHH
Confidence 0111112211000000 0000 00122222111 12233345689999999887543 3334444
Q ss_pred hCC-CCccEEEEEeeC
Q 022383 202 YLP-PDLQVVLISATL 216 (298)
Q Consensus 202 ~~~-~~~~~v~~SAT~ 216 (298)
.+. .+.+++++|.+-
T Consensus 317 ~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 317 LMAVKGTKQIHISSPV 332 (752)
T ss_pred HHccCCCceEEEeCCC
Confidence 433 356677778776
No 323
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=96.10 E-value=0.043 Score=49.07 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=31.7
Q ss_pred CccEEEechhhHhhcc-ccHHHHHHHHHhCC-CCccEEEEEeeCchhHH
Q 022383 175 AIKLLVLDESDEMLSR-GFKDQIYDVYRYLP-PDLQVVLISATLPHEIL 221 (298)
Q Consensus 175 ~l~~vViDE~h~~~~~-~~~~~i~~i~~~~~-~~~~~v~~SAT~~~~~~ 221 (298)
++++++||+++.+... ..+..+-.++..+. .+.|+++.|...|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6789999999998554 34555556666655 34577777766666543
No 324
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=96.10 E-value=0.08 Score=50.94 Aligned_cols=67 Identities=24% Similarity=0.295 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHhhcC-----CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 022383 55 KPSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~-----~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (298)
.|+..|..++..+.++ +..++.|.+|+|||+.+.- ++... +..+|||+|+...+.++++.++.+...
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~-l~~~~-----~r~vLIVt~~~~~A~~l~~dL~~~~~~ 83 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMAN-VIARL-----QRPTLVLAHNKTLAAQLYSEFKEFFPE 83 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHH-HHHHh-----CCCEEEEECCHHHHHHHHHHHHHhcCC
Confidence 4999999999887532 2577999999999976442 32222 236899999999999999999888543
No 325
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.09 E-value=0.013 Score=47.90 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=27.3
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEE
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~ 212 (298)
..+-+.||+||||.|.+ +-+..+++..+..++..++.+.
T Consensus 111 ~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFala 149 (333)
T KOG0991|consen 111 PGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALA 149 (333)
T ss_pred CCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhh
Confidence 36678999999999854 4466777777766665555443
No 326
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.09 E-value=0.049 Score=50.72 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=27.2
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
...+++||||+|.+.... ...+...+..-++...+|+.+
T Consensus 116 ~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 567899999999986443 444556666666667666655
No 327
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.07 E-value=0.066 Score=47.10 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHhhc--C---CcEEEEcCCCCchHHHHH
Q 022383 56 PSAIQQRAVMPIIK--G---RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~--~---~~~li~~pTG~GKT~~~~ 88 (298)
++|||...|..+.. + +-.++.||.|.||+..+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~ 39 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ 39 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH
Confidence 47899999988763 3 367899999999996544
No 328
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.13 Score=45.84 Aligned_cols=41 Identities=20% Similarity=0.342 Sum_probs=27.0
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEee
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT 215 (298)
....++||||+|.+... -...+.+.++.-+....++++|..
T Consensus 140 ~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 140 GGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred CCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECC
Confidence 56789999999998433 345555666665555555555544
No 329
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.01 E-value=0.17 Score=47.97 Aligned_cols=40 Identities=13% Similarity=0.339 Sum_probs=26.5
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
+.+.+++||||+|.+.... .+.+.+.++.-+....+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 3567899999999985433 344445555555666666655
No 330
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.01 E-value=0.052 Score=50.80 Aligned_cols=39 Identities=13% Similarity=0.283 Sum_probs=25.6
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
.+.+++||||+|.+.... ...+.+.++..+....+|+.+
T Consensus 118 ~~~kVvIIDEad~ls~~a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHHH-HHHHHHHHhCCCCCEEEEEEe
Confidence 467899999999986543 334445555555566666655
No 331
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.99 E-value=0.084 Score=47.94 Aligned_cols=18 Identities=33% Similarity=0.501 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
.++++.||+|+|||..+.
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999996543
No 332
>PHA00729 NTP-binding motif containing protein
Probab=95.98 E-value=0.043 Score=45.04 Aligned_cols=74 Identities=14% Similarity=0.229 Sum_probs=38.0
Q ss_pred cEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc-cH----HHHHHHHHhCCCCccEEEEEeeCchhHHHHHHh
Q 022383 153 HVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-FK----DQIYDVYRYLPPDLQVVLISATLPHEILEMTTK 226 (298)
Q Consensus 153 ~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~-~~----~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~ 226 (298)
..++.+.+.+...+....-...+.+++||||+=.-.... +. .....+...+++.++++.+...-+..+...++.
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 555566666666554321122356889999942211111 01 112223333344566777777766666666655
No 333
>PF05729 NACHT: NACHT domain
Probab=95.97 E-value=0.058 Score=41.73 Aligned_cols=38 Identities=29% Similarity=0.548 Sum_probs=22.9
Q ss_pred EEEechhhHhhccc-------cHHHHHHHHHh-CCCCccEEEEEee
Q 022383 178 LLVLDESDEMLSRG-------FKDQIYDVYRY-LPPDLQVVLISAT 215 (298)
Q Consensus 178 ~vViDE~h~~~~~~-------~~~~i~~i~~~-~~~~~~~v~~SAT 215 (298)
++|+|-+|.+.... ....+..++.. .+++.++++.|.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 49999999886532 22345555555 4456666655544
No 334
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=95.97 E-value=0.024 Score=50.44 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=23.5
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEE
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil 107 (298)
.+..++++||||||||.. +-.++..+.......+++.+
T Consensus 148 ~~GlilI~G~TGSGKTT~-l~al~~~i~~~~~~~~Ivti 185 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTL-AASIYQHCGETYPDRKIVTY 185 (372)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHHhcCCCceEEEE
Confidence 455789999999999954 34455555432222344444
No 335
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.049 Score=47.85 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=25.1
Q ss_pred ChHHHHHHHHHhh----cCC---cEEEEcCCCCchHHHHH
Q 022383 56 PSAIQQRAVMPII----KGR---DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 56 ~~~~Q~~~~~~~~----~~~---~~li~~pTG~GKT~~~~ 88 (298)
.+|||...|..+. +|+ -.++.||.|.||+..+.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~ 42 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH
Confidence 5688888887765 343 57899999999996544
No 336
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=95.95 E-value=0.061 Score=50.10 Aligned_cols=127 Identities=12% Similarity=0.163 Sum_probs=81.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHH-hhccCCce-EEEEEcCCchHHHHHHh
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA-IGDFINIQ-AHACVGGKSVGEDIRKL 148 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~ 148 (298)
|-.++.-|--.||| .++.|++..+..+-.+.++-|+++-+..++-+.+.+.. +.++.+-+ +...-
T Consensus 203 kaTVFLVPRRHGKT-Wf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k------------ 269 (668)
T PHA03372 203 KATVFLVPRRHGKT-WFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENK------------ 269 (668)
T ss_pred cceEEEecccCCce-ehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeec------------
Confidence 56788889999999 47888888887777788999999999887776655542 11222211 11110
Q ss_pred hcCCcEEEeChHH-----HHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCC-CCccEEEEEeeC
Q 022383 149 EHGVHVVSGTPGR-----VCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLISATL 216 (298)
Q Consensus 149 ~~~~~ilV~Tp~~-----l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~-~~~~~v~~SAT~ 216 (298)
+-.|.+.-|+. +....+.+.+.-+..+++++||||-+-. +.+..++..+. ++.++|++|.|-
T Consensus 270 --~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~----~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 270 --DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK----DAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred --CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH----HHHHHhhhhhcccCceEEEEeCCC
Confidence 11233322211 1122233566778899999999998743 44445555554 578899999885
No 337
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.95 E-value=0.28 Score=41.47 Aligned_cols=34 Identities=26% Similarity=0.397 Sum_probs=23.3
Q ss_pred CChHHHHHHHHHhh----cCC-cEEEEcCCCCchHHHHH
Q 022383 55 KPSAIQQRAVMPII----KGR-DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~-~~li~~pTG~GKT~~~~ 88 (298)
.+++.+.+++..+. .+. .+++.||+|+|||....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 35566666666543 333 68899999999996543
No 338
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.92 E-value=0.041 Score=52.93 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=38.8
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCch
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPH 218 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~ 218 (298)
.+.-++|+|+-|.+.+.....-++.++++.|++...++.|-+-|+
T Consensus 128 ~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 128 EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 344699999999998888889999999999999999998887543
No 339
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.078 Score=50.18 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=16.4
Q ss_pred CcEEEEcCCCCchHHHHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIALTV 91 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~ 91 (298)
..+++.||.|+|||.++...+
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 357899999999997765433
No 340
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.90 E-value=0.083 Score=52.95 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=35.2
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCc
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 217 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~ 217 (298)
..--++|+|++|.+-+......+..+++..+.+..+|+.|-+.+
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~ 163 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLP 163 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCC
Confidence 34568999999998555566788899999998898988887754
No 341
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.89 E-value=0.16 Score=45.21 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEc
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (298)
++.++++||+|+|||....-.+...... +.++.++.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~---g~~V~lIt 241 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQ---NRTVGFIT 241 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 5678999999999997655444332222 33555555
No 342
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.86 E-value=0.062 Score=50.68 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=15.7
Q ss_pred CcEEEEcCCCCchHHHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIALT 90 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~ 90 (298)
+-.+++||.|+|||.++-..
T Consensus 39 hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34788999999999776543
No 343
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.82 E-value=0.083 Score=49.11 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=13.9
Q ss_pred EEEEcCCCCchHHHHH
Q 022383 73 VIAQAQSGTGKTSMIA 88 (298)
Q Consensus 73 ~li~~pTG~GKT~~~~ 88 (298)
++++||.|+|||.++.
T Consensus 39 ~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5999999999997754
No 344
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.82 E-value=0.042 Score=47.13 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchHHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIAL 89 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~ 89 (298)
++.++++||||+|||.....
T Consensus 194 ~~vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAK 213 (282)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34788999999999976543
No 345
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.80 E-value=0.02 Score=50.31 Aligned_cols=45 Identities=20% Similarity=0.334 Sum_probs=30.2
Q ss_pred HHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHH
Q 022383 65 MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (298)
Q Consensus 65 ~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (298)
..+..+++++++||||||||.. +-.++..+.. ..+++.+=.+.|+
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~---~~rivtiEd~~El 201 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTM-SKTLISAIPP---QERLITIEDTLEL 201 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHH-HHHHHcccCC---CCCEEEECCCccc
Confidence 3455789999999999999953 3445554433 3356666666665
No 346
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.79 E-value=0.023 Score=45.10 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=26.2
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (298)
.+++++++.||+|+|||..+.- +...+.. .+..++|+ +..+|...+.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~a-i~~~~~~--~g~~v~f~-~~~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVA-IANEAIR--KGYSVLFI-TASDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHH-HHHHHHH--TT--EEEE-EHHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHH-HHHHhcc--CCcceeEe-ecCceecccc
Confidence 3578999999999999965433 3333333 24455554 4555555543
No 347
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=95.77 E-value=0.28 Score=43.35 Aligned_cols=145 Identities=18% Similarity=0.175 Sum_probs=62.8
Q ss_pred EEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHH---HHHHhhcc-CCceEEEEEcCCchHHHHHHhh
Q 022383 74 IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK---VILAIGDF-INIQAHACVGGKSVGEDIRKLE 149 (298)
Q Consensus 74 li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 149 (298)
++.++.|+|||.+....++..+...+....+++...+..+...+.. .+..+... .............. +.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~ 74 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKII------LP 74 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEE------ET
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEE------ec
Confidence 4789999999998877777766554433456666444444454333 33333322 12221111111000 13
Q ss_pred cCCcEEEeChHHH--HHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeC--chhHHHHHH
Q 022383 150 HGVHVVSGTPGRV--CDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL--PHEILEMTT 225 (298)
Q Consensus 150 ~~~~ilV~Tp~~l--~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~--~~~~~~~~~ 225 (298)
++..|.+.+-..- ..-++ -..++++++||+-.+.+..+...+......... ...+++|.|. ......+..
T Consensus 75 nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~~~~~~~~~~ 148 (384)
T PF03237_consen 75 NGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNPGGWFYEIFQ 148 (384)
T ss_dssp TS-EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---SSSHHHHHHH
T ss_pred CceEEEEecccccccccccc-----ccccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCCCCceeeeee
Confidence 4556666553221 11112 257789999999877555445444444433332 2222445544 233344444
Q ss_pred hcCCC
Q 022383 226 KFMTD 230 (298)
Q Consensus 226 ~~~~~ 230 (298)
....+
T Consensus 149 ~~~~~ 153 (384)
T PF03237_consen 149 RNLDD 153 (384)
T ss_dssp HHHCT
T ss_pred hhhcC
Confidence 33333
No 348
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.74 E-value=0.058 Score=44.53 Aligned_cols=134 Identities=13% Similarity=0.120 Sum_probs=65.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC-----ceEEEEEcCCchHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN-----IQAHACVGGKSVGE 143 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 143 (298)
.|..+++.||+|+|||.-.+-.+.+.+... +.+++|++ +.+-..++.+.++.++-... -.............
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs-~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVS-FEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEE-SSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEE-ecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 457899999999999965554454544431 33677777 34445666666665531110 00111111100000
Q ss_pred HHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc----ccHHHHHHHHHhCCCCccEEEEEeeC
Q 022383 144 DIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR----GFKDQIYDVYRYLPPDLQVVLISATL 216 (298)
Q Consensus 144 ~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~----~~~~~i~~i~~~~~~~~~~v~~SAT~ 216 (298)
. . -..++.+...+... +.-.+.+.+|||-...+... .+...+..+...+...-.+.++++..
T Consensus 95 ~--------~--~~~~~~l~~~i~~~-i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~~ 160 (226)
T PF06745_consen 95 W--------S--PNDLEELLSKIREA-IEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSEM 160 (226)
T ss_dssp ---------T--SCCHHHHHHHHHHH-HHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred c--------c--ccCHHHHHHHHHHH-HHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEcc
Confidence 0 0 11223333333221 11113389999999887211 24556666666665444566666663
No 349
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=95.74 E-value=0.056 Score=45.69 Aligned_cols=138 Identities=18% Similarity=0.227 Sum_probs=71.4
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCc---HHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT---RELATQTEKVILAIGDFINIQAHACVGGKSVGEDI 145 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~---~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (298)
.|.=+++.|.+|.|||...+-.+.+..... +..++|++.- .+++..+...... +....+..+.-...+.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~--~~~vly~SlEm~~~~l~~R~la~~s~------v~~~~i~~g~l~~~e~ 89 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG--GYPVLYFSLEMSEEELAARLLARLSG------VPYNKIRSGDLSDEEF 89 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT--SSEEEEEESSS-HHHHHHHHHHHHHT------STHHHHHCCGCHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHhhc------chhhhhhccccCHHHH
Confidence 445688889999999966555555554432 3578888753 3443333332211 1111111121111211
Q ss_pred H-------HhhcCCcEEE-e----ChHHHHHHHhccCccCCCccEEEechhhHhhcc----ccHHHHHHHHHhCC-----
Q 022383 146 R-------KLEHGVHVVS-G----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR----GFKDQIYDVYRYLP----- 204 (298)
Q Consensus 146 ~-------~~~~~~~ilV-~----Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~----~~~~~i~~i~~~~~----- 204 (298)
. .+. ...++| . |++.+...++.-......+++||||-.|.+... +....+..+.+.+.
T Consensus 90 ~~~~~~~~~l~-~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~ 168 (259)
T PF03796_consen 90 ERLQAAAEKLS-DLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKE 168 (259)
T ss_dssp HHHHHHHHHHH-TSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-hCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1 222 234444 3 455666665543222378899999999998653 23344444433332
Q ss_pred CCccEEEEEee
Q 022383 205 PDLQVVLISAT 215 (298)
Q Consensus 205 ~~~~~v~~SAT 215 (298)
.++.++.+|..
T Consensus 169 ~~i~vi~~sQl 179 (259)
T PF03796_consen 169 LNIPVIALSQL 179 (259)
T ss_dssp HTSEEEEEEEB
T ss_pred cCCeEEEcccc
Confidence 25667776664
No 350
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=95.73 E-value=0.032 Score=54.89 Aligned_cols=88 Identities=10% Similarity=0.068 Sum_probs=57.2
Q ss_pred ccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhC--CCCcEEEEecchhh
Q 022383 207 LQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRK 284 (298)
Q Consensus 207 ~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~--~~~k~lIf~~s~~~ 284 (298)
.++-+||.|....-.++...|..+-..+..... ....+....+ ......|+.++...+... .+.++||||+|++.
T Consensus 534 ~kLaGMTGTA~te~~Ef~~iY~L~Vv~IPTnrP-~~R~D~~d~v--y~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~ 610 (1025)
T PRK12900 534 KKLAGMTGTAETEASEFFEIYKLDVVVIPTNKP-IVRKDMDDLV--YKTRREKYNAIVLKVEELQKKGQPVLVGTASVEV 610 (1025)
T ss_pred hhhcccCCCChhHHHHHHHHhCCcEEECCCCCC-cceecCCCeE--ecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHH
Confidence 357899999877766666666443333222111 1111111122 233334888998888643 56799999999999
Q ss_pred HHHHHHHHhhhcC
Q 022383 285 IYYSVFYFWIRWI 297 (298)
Q Consensus 285 ~~~l~~~L~~~~~ 297 (298)
++.++..|...|+
T Consensus 611 sE~Ls~~L~~~gI 623 (1025)
T PRK12900 611 SETLSRMLRAKRI 623 (1025)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998886
No 351
>PRK10867 signal recognition particle protein; Provisional
Probab=95.70 E-value=0.16 Score=46.25 Aligned_cols=86 Identities=19% Similarity=0.293 Sum_probs=42.6
Q ss_pred cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEc--CcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHH---
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS--PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR--- 146 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~--p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 146 (298)
-++++|++|+|||....-.+...... .+.+++++. +.+.-+.+ +++.++...++.+.....+.+......
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~--~G~kV~lV~~D~~R~aa~e---QL~~~a~~~gv~v~~~~~~~dp~~i~~~a~ 176 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKK--KKKKVLLVAADVYRPAAIE---QLKTLGEQIGVPVFPSGDGQDPVDIAKAAL 176 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh--cCCcEEEEEccccchHHHH---HHHHHHhhcCCeEEecCCCCCHHHHHHHHH
Confidence 47889999999997655444332222 133555555 34443332 233344444666544322222222111
Q ss_pred -H-hhcCCc-EEEeChHHH
Q 022383 147 -K-LEHGVH-VVSGTPGRV 162 (298)
Q Consensus 147 -~-~~~~~~-ilV~Tp~~l 162 (298)
. ...+++ |+|=|++++
T Consensus 177 ~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 177 EEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHhcCCCEEEEeCCCCc
Confidence 1 123454 566787765
No 352
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.70 E-value=0.072 Score=49.44 Aligned_cols=88 Identities=24% Similarity=0.319 Sum_probs=53.9
Q ss_pred CCCH-HHHHHHHHCCCCCC----hHHHHHHHHHhh--cCCcEEEEcCCCCchHHHHHHHHHHhh---ccCCCCeEEEEEc
Q 022383 39 GIKD-DLLRGIYQYGFEKP----SAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTV---DTSSREVQALILS 108 (298)
Q Consensus 39 ~l~~-~i~~~l~~~~~~~~----~~~Q~~~~~~~~--~~~~~li~~pTG~GKT~~~~~~~~~~~---~~~~~~~~~lil~ 108 (298)
++.+ -+...|++.--.++ ...|.+-=+.+. .++-++|+|..|||||.+++--+--.+ ...-.+..++++.
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~ 267 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLG 267 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEc
Confidence 4444 44456666433322 224444444444 346689999999999977554322222 2222233499999
Q ss_pred CcHHHHHHHHHHHHHhhc
Q 022383 109 PTRELATQTEKVILAIGD 126 (298)
Q Consensus 109 p~~~l~~q~~~~~~~~~~ 126 (298)
|.+-...-+.+.+=.++.
T Consensus 268 PN~vFleYis~VLPeLGe 285 (747)
T COG3973 268 PNRVFLEYISRVLPELGE 285 (747)
T ss_pred CcHHHHHHHHHhchhhcc
Confidence 999999999888877654
No 353
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.69 E-value=0.058 Score=52.26 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=23.5
Q ss_pred CccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCch
Q 022383 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPH 218 (298)
Q Consensus 175 ~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~ 218 (298)
+-.++++||+|.+.... .. .++..+. +.+++++++|-++
T Consensus 109 ~~~IL~IDEIh~Ln~~q-Qd---aLL~~lE-~g~IiLI~aTTen 147 (725)
T PRK13341 109 KRTILFIDEVHRFNKAQ-QD---ALLPWVE-NGTITLIGATTEN 147 (725)
T ss_pred CceEEEEeChhhCCHHH-HH---HHHHHhc-CceEEEEEecCCC
Confidence 45689999999974322 22 2333332 4567787777544
No 354
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.63 E-value=0.18 Score=45.84 Aligned_cols=86 Identities=21% Similarity=0.275 Sum_probs=43.2
Q ss_pred cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC--cHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHH----H
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP--TRELATQTEKVILAIGDFINIQAHACVGGKSVGED----I 145 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p--~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 145 (298)
-++++|++|+|||....-.+....... +.+++++.- .+..+.+ +++.++...++.+.....+.+...- .
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~--g~kV~lV~~D~~R~~a~~---QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQ--GKKVLLVACDLYRPAAIE---QLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhC--CCeEEEEeccccchHHHH---HHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 478999999999977554443322111 335665553 3443333 2333344445555443332222111 1
Q ss_pred HH-hhcCCc-EEEeChHHH
Q 022383 146 RK-LEHGVH-VVSGTPGRV 162 (298)
Q Consensus 146 ~~-~~~~~~-ilV~Tp~~l 162 (298)
.. ..++++ |+|=||+++
T Consensus 176 ~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHhcCCCEEEEeCCCcc
Confidence 11 134454 667787754
No 355
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.62 E-value=0.12 Score=43.11 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=26.6
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (298)
+..|.-+++.|++|+|||...+--+.+..... +..++|++.
T Consensus 10 l~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~ 50 (242)
T cd00984 10 LQPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSL 50 (242)
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeC
Confidence 34567889999999999955443344433321 446778773
No 356
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.58 E-value=0.02 Score=48.53 Aligned_cols=25 Identities=12% Similarity=0.364 Sum_probs=17.6
Q ss_pred cEEEEcCCCCchHHHHHHHHHHhhcc
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQTVDT 97 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~~~~~ 97 (298)
=++|.||||||||.. +-++++.+..
T Consensus 127 LILVTGpTGSGKSTT-lAamId~iN~ 151 (353)
T COG2805 127 LILVTGPTGSGKSTT-LAAMIDYINK 151 (353)
T ss_pred eEEEeCCCCCcHHHH-HHHHHHHHhc
Confidence 378899999999955 3345555544
No 357
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.57 E-value=0.11 Score=43.94 Aligned_cols=38 Identities=16% Similarity=0.112 Sum_probs=25.8
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (298)
.|.-++|.|++|+|||.-.+-.+.+.... +.+++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~---Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR---GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC---CCcEEEEEe
Confidence 45678999999999996544444443322 457788773
No 358
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.56 E-value=0.059 Score=47.30 Aligned_cols=44 Identities=18% Similarity=0.374 Sum_probs=28.6
Q ss_pred HhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHH
Q 022383 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (298)
Q Consensus 66 ~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (298)
.+..+++++|+|+||||||.. +-.++..+.. ..+++.+=-+.|+
T Consensus 156 ~v~~~~nili~G~tgSGKTTl-l~aL~~~ip~---~~ri~tiEd~~El 199 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTF-TNAALREIPA---IERLITVEDAREI 199 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHH-HHHHHhhCCC---CCeEEEecCCCcc
Confidence 345789999999999999953 4455555533 3355554444443
No 359
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.56 E-value=0.17 Score=45.09 Aligned_cols=92 Identities=15% Similarity=0.194 Sum_probs=50.4
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (298)
.|.-+++.|++|+|||...+..+.. +.. .+.+++|+.-. +...|+..+.++++-.. .-..+...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~-~a~--~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~--~~l~l~~e---------- 144 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR-LAK--RGGKVLYVSGE-ESPEQIKLRADRLGIST--ENLYLLAE---------- 144 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH-HHh--cCCeEEEEECC-cCHHHHHHHHHHcCCCc--ccEEEEcc----------
Confidence 3567899999999999654433322 222 23478888653 44566666555543111 00111111
Q ss_pred hcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhc
Q 022383 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (298)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~ 189 (298)
...+.+...+.. .+.++||||+++.+..
T Consensus 145 --------~~le~I~~~i~~-----~~~~lVVIDSIq~l~~ 172 (372)
T cd01121 145 --------TNLEDILASIEE-----LKPDLVIIDSIQTVYS 172 (372)
T ss_pred --------CcHHHHHHHHHh-----cCCcEEEEcchHHhhc
Confidence 112334443332 3678999999998753
No 360
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.25 Score=44.54 Aligned_cols=126 Identities=13% Similarity=0.143 Sum_probs=62.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEc--CcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS--PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~--p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (298)
.-++++||+|+|||......+...... .+.++.++. +.+..+.. .++.++...++.....
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~--~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~~------------- 285 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLH--MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYPV------------- 285 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEecccchhhhHHH---HHHHHHHhcCCCeeeh-------------
Confidence 347899999999997765444333222 133455554 33333332 3333333334332110
Q ss_pred hcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhc-cccHHHHHHHHHhCC---CCccEEEEEeeCch-hHHHH
Q 022383 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLP---PDLQVVLISATLPH-EILEM 223 (298)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~-~~~~~~i~~i~~~~~---~~~~~v~~SAT~~~-~~~~~ 223 (298)
..+..+...+. -.+.++|+||=+-.... ......+..+++... +.-.++.+|||... .+...
T Consensus 286 --------~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~ 352 (432)
T PRK12724 286 --------KDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTV 352 (432)
T ss_pred --------HHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHH
Confidence 01222233332 14568899996543321 123344455555432 22356788999866 44555
Q ss_pred HHhc
Q 022383 224 TTKF 227 (298)
Q Consensus 224 ~~~~ 227 (298)
...+
T Consensus 353 ~~~f 356 (432)
T PRK12724 353 LKAY 356 (432)
T ss_pred HHHh
Confidence 4444
No 361
>PRK04328 hypothetical protein; Provisional
Probab=95.54 E-value=0.16 Score=42.74 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=34.2
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (298)
.|..+++.|++|+|||.-.+-.+.+.+.. +..++|++ +.+-..++.+.++.++
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~---ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc---CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 45778999999999996544444444433 44567766 5555666666666553
No 362
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=95.54 E-value=0.24 Score=39.11 Aligned_cols=136 Identities=14% Similarity=0.179 Sum_probs=75.6
Q ss_pred cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHH-HHHHHhhccCCceEEEEEcCC-----chH-HH
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE-KVILAIGDFINIQAHACVGGK-----SVG-ED 144 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~-~~~~~~~~~~~~~~~~~~~~~-----~~~-~~ 144 (298)
-+.|-...|-|||.+++--++..+.. +.+++|+-=.+.-..+=. ..++++ .++.......+. ... +.
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~---G~rV~iiQFlKg~~~~GE~~~l~~~---~~v~~~~~g~~~~~~~~~~~~~~ 96 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQ---GTPVLIVQFLKGGIQQGPDRPIQLG---QNLDWVRCDLPRCLDTPHLDESE 96 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcC---CCEEEEEEEecCCCcchHHHHHHhC---CCcEEEECCCCCeeeCCCcCHHH
Confidence 35666889999999988777776655 557777654443211111 111221 122222211110 000 00
Q ss_pred HHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcccc--HHHHHHHHHhCCCCccEEEEEeeCchhHHH
Q 022383 145 IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILE 222 (298)
Q Consensus 145 ~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~--~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~ 222 (298)
... .+......+ ..+.-..+++||+||+-...+.++ ...+..+++..|....+|+.--..|+.+.+
T Consensus 97 ~~~-----------~~~~~~~a~-~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie 164 (178)
T PRK07414 97 KKA-----------LQELWQYTQ-AVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLA 164 (178)
T ss_pred HHH-----------HHHHHHHHH-HHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHH
Confidence 000 011111111 123346789999999988877774 567778888888888888777777877666
Q ss_pred HHH
Q 022383 223 MTT 225 (298)
Q Consensus 223 ~~~ 225 (298)
...
T Consensus 165 ~AD 167 (178)
T PRK07414 165 IAD 167 (178)
T ss_pred hCC
Confidence 543
No 363
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=95.53 E-value=0.16 Score=45.66 Aligned_cols=41 Identities=15% Similarity=0.367 Sum_probs=25.2
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEee
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT 215 (298)
.+.+++||||+|.|.... .+.+.+.++.-+++..+|+.|.+
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCCeEEEEECC
Confidence 467899999999995443 34455555554445444444433
No 364
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.13 Score=48.21 Aligned_cols=57 Identities=23% Similarity=0.331 Sum_probs=38.6
Q ss_pred CCccccCcccCCCCHHHHHHHHH---CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 28 GVEAITSFDAMGIKDDLLRGIYQ---YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 28 ~~~~~~~~~~l~l~~~i~~~l~~---~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
...+..+|++.|=-++++..|++ +...+|-.+.... +..-+.+++.||.|+|||+.+
T Consensus 426 ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~G---i~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 426 VEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFG---ISPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhc---CCCCceEEEECCCCcchHHHH
Confidence 34455699999877788888775 2333444333332 234588999999999999764
No 365
>PRK06904 replicative DNA helicase; Validated
Probab=95.49 E-value=0.33 Score=44.81 Aligned_cols=143 Identities=18% Similarity=0.161 Sum_probs=70.4
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE-Ec-CCchHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VG-GKSVGED 144 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~ 144 (298)
+..|.=+++-|.+|+|||.-.+-.+.+.... .+..++|++. .--..|+..++-.... ++....+ .| ..+..+.
T Consensus 218 l~~G~LiiIaarPg~GKTafalnia~~~a~~--~g~~Vl~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~g~~l~~~e~ 292 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAMNLCENAAMA--SEKPVLVFSL-EMPAEQIMMRMLASLS--RVDQTKIRTGQNLDQQDW 292 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHHHHHHHHHHh--cCCeEEEEec-cCCHHHHHHHHHHhhC--CCCHHHhccCCCCCHHHH
Confidence 4445567778999999996433233322222 1335666653 2334555554433222 2222111 22 2222221
Q ss_pred ------HHHhhcCCcEEE-----eChHHHHHHHhccCccCCCccEEEechhhHhhccc----cHHHHHHHHHhCC-----
Q 022383 145 ------IRKLEHGVHVVS-----GTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLP----- 204 (298)
Q Consensus 145 ------~~~~~~~~~ilV-----~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~----~~~~i~~i~~~~~----- 204 (298)
...+....++.| .|+..+...++........+++||||-.+.+...+ ....+..+.+.+.
T Consensus 293 ~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke 372 (472)
T PRK06904 293 AKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKE 372 (472)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 112223445666 35556655444321112358999999999885332 2233444444432
Q ss_pred CCccEEEEEe
Q 022383 205 PDLQVVLISA 214 (298)
Q Consensus 205 ~~~~~v~~SA 214 (298)
.+++++++|.
T Consensus 373 l~ipVi~lsQ 382 (472)
T PRK06904 373 LKVPVVALSQ 382 (472)
T ss_pred hCCeEEEEEe
Confidence 2677777763
No 366
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.47 E-value=0.039 Score=48.88 Aligned_cols=27 Identities=15% Similarity=0.398 Sum_probs=19.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhc
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~ 96 (298)
.+.-++++||||||||... -.++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 5678999999999999643 34555553
No 367
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.46 E-value=0.097 Score=48.14 Aligned_cols=83 Identities=18% Similarity=0.181 Sum_probs=63.0
Q ss_pred HHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh----cCCcEEEeChHHHH
Q 022383 88 ALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVC 163 (298)
Q Consensus 88 ~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~ 163 (298)
+..++..+. +..+.++||.|-|+.-|+++...++.. ++++..+||+.+..+....+. +.+.|+|+|.
T Consensus 329 l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd---- 399 (519)
T KOG0331|consen 329 LGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD---- 399 (519)
T ss_pred HHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc----
Confidence 444555554 334568999999999999999988765 478899999998887765553 5789999996
Q ss_pred HHHhccCccCCCccEEEe
Q 022383 164 DMIKRKTLRTRAIKLLVL 181 (298)
Q Consensus 164 ~~~~~~~~~~~~l~~vVi 181 (298)
+-.+.+++.++++||-
T Consensus 400 --VAaRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 400 --VAARGLDVPDVDLVIN 415 (519)
T ss_pred --cccccCCCccccEEEe
Confidence 2235788889999884
No 368
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.43 E-value=0.19 Score=47.80 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=22.1
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~ 212 (298)
...++|||||+|.+.... ...+...+..-+....+|+.
T Consensus 119 ~~~kVvIIDEa~~L~~~a-~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred CCeEEEEEeChHhCCHHH-HHHHHHHHhcCCCCeEEEEE
Confidence 567899999999985433 23333444444444434443
No 369
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.41 E-value=0.16 Score=47.81 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=23.0
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
...+++||||+|.|.... ...+...++.-+...-+|+++
T Consensus 118 ~~~KVIIIDEad~Lt~~A-~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSA-WNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCHHH-HHHHHHHHHhCCCcEEEEEEC
Confidence 356789999999985432 334444555544444444444
No 370
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.39 E-value=0.32 Score=42.09 Aligned_cols=130 Identities=16% Similarity=0.273 Sum_probs=68.7
Q ss_pred cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC--cHHHHHHHHHHHHHhhccCCceEEEE-EcCCchHHHHHHh
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP--TRELATQTEKVILAIGDFINIQAHAC-VGGKSVGEDIRKL 148 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p--~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 148 (298)
-++++|-.|+|||....-.+.... . .+.++++.+- .|+=+.++ ++.+++..++.+..- .|+.+...-...+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~-~--~g~~VllaA~DTFRAaAiEQ---L~~w~er~gv~vI~~~~G~DpAaVafDAi 214 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLK-Q--QGKSVLLAAGDTFRAAAIEQ---LEVWGERLGVPVISGKEGADPAAVAFDAI 214 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHH-H--CCCeEEEEecchHHHHHHHH---HHHHHHHhCCeEEccCCCCCcHHHHHHHH
Confidence 378889999999977543332222 2 2446666664 44544443 344555567776552 3333332222111
Q ss_pred hcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc-ccHHHHHHHHHhCCCCc------cEEEEEeeCchhHH
Q 022383 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDL------QVVLISATLPHEIL 221 (298)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~-~~~~~i~~i~~~~~~~~------~~v~~SAT~~~~~~ 221 (298)
. . -.-+++++|++|=|-++... +....+.++.+-..+.. -++.+-||......
T Consensus 215 ~------------------~--Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal 274 (340)
T COG0552 215 Q------------------A--AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL 274 (340)
T ss_pred H------------------H--HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH
Confidence 1 0 11235566666666655433 35566666666555433 24444899876555
Q ss_pred HHHHhc
Q 022383 222 EMTTKF 227 (298)
Q Consensus 222 ~~~~~~ 227 (298)
...+.+
T Consensus 275 ~QAk~F 280 (340)
T COG0552 275 SQAKIF 280 (340)
T ss_pred HHHHHH
Confidence 544443
No 371
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=95.39 E-value=0.063 Score=45.59 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=33.7
Q ss_pred CccEEEechhhHhhccccHHHHHHHHHhCC-------CCccEEEEEeeCchhHHHHHH
Q 022383 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLP-------PDLQVVLISATLPHEILEMTT 225 (298)
Q Consensus 175 ~l~~vViDE~h~~~~~~~~~~i~~i~~~~~-------~~~~~v~~SAT~~~~~~~~~~ 225 (298)
.=.++|+||+|.|. .+..+.+.-.+++.+ ...-+|++|-+-...+.+...
T Consensus 178 ~rslFIFDE~DKmp-~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL 234 (344)
T KOG2170|consen 178 QRSLFIFDEVDKLP-PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIAL 234 (344)
T ss_pred CCceEEechhhhcC-HhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHH
Confidence 33689999999984 456666666666654 244578899877665554433
No 372
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.35 E-value=0.11 Score=46.78 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=28.9
Q ss_pred ccCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 32 ITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 32 ~~~~~~l~l~~~i~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
..+|++++-.+...+.+.+. .+..+..++.. .+...+.+++.||+|+|||..+
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~---g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEV---GIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhc---CCCCCCceEEECCCCCChHHHH
Confidence 45677776444444444442 11222211111 1123468999999999999653
No 373
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.35 E-value=0.15 Score=46.38 Aligned_cols=144 Identities=19% Similarity=0.212 Sum_probs=68.9
Q ss_pred HhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE-EcCCchHHH
Q 022383 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VGGKSVGED 144 (298)
Q Consensus 66 ~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 144 (298)
-+..|.-+++.|++|+|||.-.+-.+.+.... .+..++|++. .--..|+..++-... .++....+ .|.....+.
T Consensus 190 G~~~g~liviag~pg~GKT~~al~ia~~~a~~--~g~~v~~fSl-Em~~~~l~~Rl~~~~--~~v~~~~~~~~~l~~~~~ 264 (421)
T TIGR03600 190 GLVKGDLIVIGARPSMGKTTLALNIAENVALR--EGKPVLFFSL-EMSAEQLGERLLASK--SGINTGNIRTGRFNDSDF 264 (421)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEEC-CCCHHHHHHHHHHHH--cCCCHHHHhcCCCCHHHH
Confidence 34456778889999999995544333333212 1345677762 223444444433221 12222111 222222111
Q ss_pred ------HHHhhcCCcEEEe-----ChHHHHHHHhccCccCCCccEEEechhhHhhcc---ccHHHHHHHHHhCC-----C
Q 022383 145 ------IRKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR---GFKDQIYDVYRYLP-----P 205 (298)
Q Consensus 145 ------~~~~~~~~~ilV~-----Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~---~~~~~i~~i~~~~~-----~ 205 (298)
...+. +.++.|. |++.+...++.-......+++||||=.+.+... .....+..+.+.+. .
T Consensus 265 ~~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~ 343 (421)
T TIGR03600 265 NRLLNAVDRLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKEL 343 (421)
T ss_pred HHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 11222 2355553 344555444432112236899999999888531 12223333333322 2
Q ss_pred CccEEEEEee
Q 022383 206 DLQVVLISAT 215 (298)
Q Consensus 206 ~~~~v~~SAT 215 (298)
++.++++|..
T Consensus 344 ~i~Vi~lsQl 353 (421)
T TIGR03600 344 DVPVVLLAQL 353 (421)
T ss_pred CCcEEEeccc
Confidence 5667776654
No 374
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.073 Score=50.40 Aligned_cols=108 Identities=21% Similarity=0.273 Sum_probs=62.7
Q ss_pred ChHHHHHHHHHhh--------cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 022383 56 PSAIQQRAVMPII--------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (298)
Q Consensus 56 ~~~~Q~~~~~~~~--------~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (298)
+-..-.+++..+. +|.-+.++||+|.|||.. +..+++.+.+-
T Consensus 328 LekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSL---------------------------gkSIA~al~Rk--- 377 (782)
T COG0466 328 LEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSL---------------------------GKSIAKALGRK--- 377 (782)
T ss_pred chhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhH---------------------------HHHHHHHhCCC---
Confidence 4555555555443 356788899999999932 33333322110
Q ss_pred CCceEEEEEcCCchHHHHHHhhcCCcEEEe-ChHHHHHHHhc-cCccCCCccEEEechhhHhhccccHHHHHHHHHhC
Q 022383 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSG-TPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (298)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~-Tp~~l~~~~~~-~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~ 203 (298)
-+-...||.....+ +.+.-+=+|| -|+++..-+.. +..+. ++++||+|.|.+...++.--.++.-+
T Consensus 378 ---fvR~sLGGvrDEAE---IRGHRRTYIGamPGrIiQ~mkka~~~NP----v~LLDEIDKm~ss~rGDPaSALLEVL 445 (782)
T COG0466 378 ---FVRISLGGVRDEAE---IRGHRRTYIGAMPGKIIQGMKKAGVKNP----VFLLDEIDKMGSSFRGDPASALLEVL 445 (782)
T ss_pred ---EEEEecCccccHHH---hccccccccccCChHHHHHHHHhCCcCC----eEEeechhhccCCCCCChHHHHHhhc
Confidence 12223455443332 2222245555 59999988876 44444 89999999998775555444555444
No 375
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.34 E-value=0.18 Score=48.05 Aligned_cols=40 Identities=10% Similarity=0.252 Sum_probs=23.4
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
...-+++||||+|.+.... .+.+...++.-+...-+|+++
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 3567899999999985433 233444444444444444444
No 376
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=95.33 E-value=0.2 Score=44.77 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=22.0
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhccC
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS 98 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~ 98 (298)
+-.|+-+.++||+|+|||.. +..+.+.+..+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL-~~~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVL-LQKIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHH-HHHHHHhhccc
Confidence 34789999999999999964 33344544443
No 377
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.33 E-value=0.031 Score=52.37 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHhh----cCCcEEEEcCCCCchHHHHHHHHHHhh
Q 022383 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTV 95 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~li~~pTG~GKT~~~~~~~~~~~ 95 (298)
.|+.+|.+.+..+. +|+-.|+..|||+|||+..+-..+..+
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 48999998877654 789999999999999988766666654
No 378
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.32 E-value=0.14 Score=46.18 Aligned_cols=55 Identities=24% Similarity=0.252 Sum_probs=34.6
Q ss_pred ccccCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 30 EAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 30 ~~~~~~~~l~l~~~i~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
.|..+|++++-.+..++.+++. .+..+..++..- +...+.+++.||+|+|||...
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G---l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG---IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC---CCCCceEEEECCCCCCHHHHH
Confidence 4556888887666666666553 223232222211 235688999999999999653
No 379
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.32 E-value=0.11 Score=50.96 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=31.0
Q ss_pred cccCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~ 86 (298)
+..+|++++-....++.++++ .+.++..++.. .+..++.+++.||+|+|||..
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~---gi~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHL---GIEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhc---CCCCCceEEEECCCCCChHHH
Confidence 345778876555555555543 11211111111 123568899999999999954
No 380
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.30 E-value=0.7 Score=36.25 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=13.8
Q ss_pred EEEEcCCCCchHHHHHH
Q 022383 73 VIAQAQSGTGKTSMIAL 89 (298)
Q Consensus 73 ~li~~pTG~GKT~~~~~ 89 (298)
+++.|++|+|||.....
T Consensus 3 ~~~~G~~G~GKTt~~~~ 19 (173)
T cd03115 3 ILLVGLQGVGKTTTAAK 19 (173)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57889999999976543
No 381
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=95.28 E-value=0.32 Score=38.52 Aligned_cols=142 Identities=16% Similarity=0.247 Sum_probs=73.4
Q ss_pred EEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHH-HHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcC
Q 022383 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA-TQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (298)
Q Consensus 73 ~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~-~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (298)
++|....|-|||.+++-.++..+.. +.++.|+-=.+--. .--...+.++. ..+....+..+.....+...
T Consensus 31 i~V~TG~GKGKTTAAlG~alRa~Gh---G~rv~vvQFiKg~~~~GE~~~~~~~~--~~v~~~~~~~g~tw~~~~~~---- 101 (198)
T COG2109 31 IIVFTGNGKGKTTAALGLALRALGH---GLRVGVVQFIKGGWKYGEEAALEKFG--LGVEFHGMGEGFTWETQDRE---- 101 (198)
T ss_pred EEEEecCCCChhHHHHHHHHHHhcC---CCEEEEEEEeecCcchhHHHHHHhhc--cceeEEecCCceeCCCcCcH----
Confidence 6777889999999988888877765 44555554222110 11111222221 11221111111111100000
Q ss_pred CcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcccc--HHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHh
Q 022383 152 VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTK 226 (298)
Q Consensus 152 ~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~--~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~ 226 (298)
.++ ..+........ ..+.-..+++||+||+...+..++ .+.+..+++..|....+|+.--..|+.+.+....
T Consensus 102 ~d~--~aa~~~w~~a~-~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 102 ADI--AAAKAGWEHAK-EALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred HHH--HHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 011 11111111111 122234789999999998877775 4667778888777777777666667776665543
No 382
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.26 E-value=0.14 Score=50.21 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=31.6
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH--hhcCCcEEEEcCCCCchHHHH
Q 022383 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP--IIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 32 ~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~--~~~~~~~li~~pTG~GKT~~~ 87 (298)
..+|++++..+.+++.|.+. +..+..++ +.+.. +...+.+++.||+|+|||..+
T Consensus 449 ~~~~~di~g~~~~k~~l~~~-v~~~~~~~-~~~~~~g~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREA-VEWPLKHP-EIFEKMGIRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred ccchhhcccHHHHHHHHHHH-HHhhhhCH-HHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 44777777777777777663 11111111 11211 223467999999999999653
No 383
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.25 E-value=0.16 Score=47.86 Aligned_cols=38 Identities=11% Similarity=0.296 Sum_probs=22.1
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEE
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVL 211 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~ 211 (298)
..+.+++||||+|.+.... .+.+...++.-+...-+|+
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a-~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSA-FNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred cCCCEEEEEEChhhcCHHH-HHHHHHhhccCCCCEEEEE
Confidence 3577899999999985432 2333344444333343443
No 384
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.22 E-value=0.053 Score=49.39 Aligned_cols=41 Identities=17% Similarity=0.340 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhhcCC--cEEEEcCCCCchHHHHHHHHHHhhccC
Q 022383 57 SAIQQRAVMPIIKGR--DVIAQAQSGTGKTSMIALTVCQTVDTS 98 (298)
Q Consensus 57 ~~~Q~~~~~~~~~~~--~~li~~pTG~GKT~~~~~~~~~~~~~~ 98 (298)
.+.|...+..+.+.. =+++.||||||||.. +..+++.+...
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 567777777776553 478889999999965 44566665554
No 385
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=95.21 E-value=0.043 Score=51.52 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=17.2
Q ss_pred hhcCCcEEEEcCCCCchHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~ 86 (298)
+..|+-+.++||+|+|||..
T Consensus 358 i~~G~~vaIvG~SGsGKSTL 377 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTL 377 (529)
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34789999999999999963
No 386
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.19 E-value=0.46 Score=42.23 Aligned_cols=109 Identities=16% Similarity=0.176 Sum_probs=59.9
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (298)
.+.+.+.|+.|.|||+. +-++........+.+ ++..+...++...+.++. ++.+.-.
T Consensus 62 ~~GlYl~G~vG~GKT~L--md~f~~~lp~~~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~l~------ 118 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTML--MDLFYDSLPIKRKRR----VHFHEFMLDVHSRLHQLR-----------GQDDPLP------ 118 (362)
T ss_pred CceEEEECCCCCchhHH--HHHHHHhCCcccccc----ccccHHHHHHHHHHHHHh-----------CCCccHH------
Confidence 57899999999999953 223332222212212 266788888888877764 1111100
Q ss_pred cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCC-CCccEEEEEeeCchh
Q 022383 150 HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLISATLPHE 219 (298)
Q Consensus 150 ~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~-~~~~~v~~SAT~~~~ 219 (298)
.+...+ .+...+++|||+|.- +.+-.-.+..+++.+- ...-+|+.|-+.|++
T Consensus 119 -----------~va~~l------~~~~~lLcfDEF~V~-DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 119 -----------QVADEL------AKESRLLCFDEFQVT-DIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred -----------HHHHHH------HhcCCEEEEeeeecc-chhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 111111 235568999999863 3333444445555443 455566666666553
No 387
>PRK06620 hypothetical protein; Validated
Probab=95.15 E-value=0.081 Score=43.38 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCchHHH
Q 022383 71 RDVIAQAQSGTGKTSM 86 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~ 86 (298)
+.+++.||+|+|||.-
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 5689999999999953
No 388
>PRK09354 recA recombinase A; Provisional
Probab=95.13 E-value=0.073 Score=46.77 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 115 (298)
|+-+.+.||+|+|||.-.+..+.+.... +..++|+-.-..+-.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~---G~~~~yId~E~s~~~ 102 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDP 102 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEECCccchHH
Confidence 4678899999999996655544444332 457888886655543
No 389
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=95.13 E-value=0.43 Score=41.60 Aligned_cols=34 Identities=18% Similarity=0.213 Sum_probs=26.0
Q ss_pred CChHHHHHHHHHhh----cCC---cEEEEcCCCCchHHHHH
Q 022383 55 KPSAIQQRAVMPII----KGR---DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~---~~li~~pTG~GKT~~~~ 88 (298)
.++|||...|..+. .++ -.++.||.|.||+..+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~ 43 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVE 43 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 36788888888765 343 58999999999995543
No 390
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=95.10 E-value=0.073 Score=50.46 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=28.0
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
+++-..+|+||+..-++......+...+..+.+++.+++++
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIa 521 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA 521 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEe
Confidence 35668999999988777767777777776555554444443
No 391
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.10 E-value=0.061 Score=46.66 Aligned_cols=60 Identities=15% Similarity=0.228 Sum_probs=39.5
Q ss_pred CCCCChHHHHHHHHHhhcC-CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHH
Q 022383 52 GFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (298)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~-~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 115 (298)
.|...++-|...+-.+..+ .|++++|.||||||.. +-.+...+.. ..++|.+=-+.||-.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~---~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDS---DERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCC---cccEEEEeehhhhcc
Confidence 3556778888777666655 5999999999999953 2222222222 227788777777643
No 392
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.09 E-value=0.081 Score=46.03 Aligned_cols=44 Identities=16% Similarity=0.269 Sum_probs=28.3
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 115 (298)
.|+-+.+.+|+|+|||.-.+..+.+.... +..++|+-.-..+-.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~---g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA---GGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCcEEEEcccchhHH
Confidence 34678999999999996555444443322 456788865444333
No 393
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=95.09 E-value=0.15 Score=47.30 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=29.0
Q ss_pred cccCcccCC-CCHHHHHHHHHC--CCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHH
Q 022383 31 AITSFDAMG-IKDDLLRGIYQY--GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 31 ~~~~~~~l~-l~~~i~~~l~~~--~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~ 86 (298)
|..+|++++ +.+.+....... .+.++..+...- +...+.+++.||+|+|||..
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~g---l~~p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYD---LKPPKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhcc---CCCCcceEEECCCCCcHHHH
Confidence 345788876 444433332222 122222222211 22357899999999999964
No 394
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=95.08 E-value=0.082 Score=46.20 Aligned_cols=50 Identities=20% Similarity=0.274 Sum_probs=31.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (298)
.+++++||.|+|||..+-+.+-. ......+.|=+..+.+-++++.+.+++
T Consensus 163 pSmIlWGppG~GKTtlArlia~t---sk~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIAST---SKKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhh---cCCCceEEEEEeccccchHHHHHHHHH
Confidence 48999999999999644322211 112234566677777777776665554
No 395
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.08 E-value=0.18 Score=44.67 Aligned_cols=17 Identities=35% Similarity=0.473 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
.+++.||.|+|||....
T Consensus 38 ~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR 54 (355)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999996543
No 396
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=95.07 E-value=0.2 Score=50.09 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=62.1
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.+++|+||+++-+..+.+.++++. .+.++..++|+.+..+....+ .+..+|+|||. +-..++++.++
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~--p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~------iie~GIDIp~v 731 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELV--PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT------IIETGIDIPNA 731 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhC--CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC------hhhcccccccC
Confidence 4589999999999999998888763 357899999998766554333 25689999996 23357899999
Q ss_pred cEEEechhhHh
Q 022383 177 KLLVLDESDEM 187 (298)
Q Consensus 177 ~~vViDE~h~~ 187 (298)
++||++.++.+
T Consensus 732 ~~VIi~~a~~~ 742 (926)
T TIGR00580 732 NTIIIERADKF 742 (926)
T ss_pred CEEEEecCCCC
Confidence 99999999764
No 397
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.07 E-value=0.59 Score=38.77 Aligned_cols=52 Identities=12% Similarity=0.185 Sum_probs=32.8
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
.|.-+++.|++|+|||.-..--+...+.. +.+++|+.-. +-..++.+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~---g~~~~y~~~e-~~~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ---GKKVYVITTE-NTSKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC---CCEEEEEEcC-CCHHHHHHHHHHC
Confidence 35678999999999995544333343332 4577777754 3345666666555
No 398
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.00 E-value=0.14 Score=47.72 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=33.7
Q ss_pred ccccCcccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 30 EAITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 30 ~~~~~~~~l~l~~~i~~~l~~~~--~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
.+..+|+++.-.+.++..+.+.- +..+..++..- ....+.+++.||+|+|||...
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHH
Confidence 45678999876666666655421 22222222211 122367999999999999643
No 399
>PRK13764 ATPase; Provisional
Probab=94.97 E-value=0.059 Score=50.82 Aligned_cols=27 Identities=15% Similarity=0.405 Sum_probs=20.3
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhc
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~ 96 (298)
.+++++++||||||||.. +-.++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 468899999999999954 344555554
No 400
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.93 E-value=0.026 Score=47.03 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
+.-++++|+|||||+....
T Consensus 127 RGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 127 RGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred CceEEEECCCCCCchhhHH
Confidence 3457999999999996643
No 401
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.87 E-value=0.11 Score=49.22 Aligned_cols=40 Identities=23% Similarity=0.289 Sum_probs=30.3
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEE
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~ 212 (298)
+++...+|+|||-.-++..-+..++..++.+..+.-++.+
T Consensus 620 lr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvI 659 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVI 659 (716)
T ss_pred hcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEE
Confidence 4788999999998887777777888888777766434433
No 402
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.84 E-value=0.18 Score=44.47 Aligned_cols=50 Identities=18% Similarity=0.177 Sum_probs=35.4
Q ss_pred HHHhcCCCCCCCCCcceeecccCCccccCcccCCCCHHHHHHHHHCCCCC
Q 022383 6 AMRRRGGGGGMDDDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEK 55 (298)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~ 55 (298)
++....+......+++.++....+..+......|+++...+.|++.||..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~kL~~~g~~t 54 (344)
T PLN03187 5 AQADEGAQLQLVEAEEVDEEEDLFESIDKLISQGINAGDVKKLQDAGIYT 54 (344)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhcccCHHHHhhCCCCHHHHHHHHHcCCCc
Confidence 34444444555556666655555777777888899999999999999863
No 403
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=94.83 E-value=0.028 Score=50.52 Aligned_cols=48 Identities=21% Similarity=0.160 Sum_probs=37.5
Q ss_pred cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
+++++||||+|||.++++|-+-.. ...+|++=|.-++........++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----CCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999999999888766542 236788889999998877766554
No 404
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=94.80 E-value=0.42 Score=41.95 Aligned_cols=40 Identities=10% Similarity=0.274 Sum_probs=26.9
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEe
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SA 214 (298)
...+++||||+|.+.... ...+.+.++.-|.+..+|+.|.
T Consensus 109 ~~~kvviI~~a~~~~~~a-~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 109 SNKKVYIIEHADKMTASA-ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred cCceEEEeehHhhhCHHH-HHHHHHHhcCCCCCceEEEEeC
Confidence 467899999999985442 4555566666556666666544
No 405
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.80 E-value=0.19 Score=41.13 Aligned_cols=40 Identities=15% Similarity=0.283 Sum_probs=23.2
Q ss_pred cEEEechhhHhh-c----cccHHHHHHHHHhCCC-CccEEEEEeeC
Q 022383 177 KLLVLDESDEML-S----RGFKDQIYDVYRYLPP-DLQVVLISATL 216 (298)
Q Consensus 177 ~~vViDE~h~~~-~----~~~~~~i~~i~~~~~~-~~~~v~~SAT~ 216 (298)
-+|||||+|.+. . ..+...+..++..... ....++++++-
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 589999999998 1 2355566666666332 22234445553
No 406
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.76 E-value=0.082 Score=46.02 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=28.9
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 115 (298)
|+-+.+.+|+|+|||.-.+..+.+.... +..++|+..-..+-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~---g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKL---GGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc---CCCEEEECccccHHH
Confidence 4678899999999996554444443322 457888887555443
No 407
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=94.76 E-value=0.4 Score=48.08 Aligned_cols=143 Identities=11% Similarity=0.140 Sum_probs=101.8
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhc--------------
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVD-------------- 96 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~-------------- 96 (298)
....|.+|||- |.+.=..+|.. |++-+..+...-|++-...|--=.|+-..+.-+..+.
T Consensus 710 kdv~FkdLGLl--IIDEEqRFGVk-----~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T 782 (1139)
T COG1197 710 KDVKFKDLGLL--IIDEEQRFGVK-----HKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKT 782 (1139)
T ss_pred CCcEEecCCeE--EEechhhcCcc-----HHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEE
Confidence 33456666542 22222334433 7788888888888888888888888665544333320
Q ss_pred ----------------cCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHH----hhcCCcEEE
Q 022383 97 ----------------TSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK----LEHGVHVVS 156 (298)
Q Consensus 97 ----------------~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ilV 156 (298)
.-.++.++.||.|..+-..++.+.++.+- ...++.+.||.....+.... +.+.+||+|
T Consensus 783 ~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LV--PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv 860 (1139)
T COG1197 783 FVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELV--PEARIAVAHGQMRERELEEVMLDFYNGEYDVLV 860 (1139)
T ss_pred EEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhC--CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEE
Confidence 01346799999999999999999999985 45789999998877654333 347899999
Q ss_pred eChHHHHHHHhccCccCCCccEEEechhhHhh
Q 022383 157 GTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 157 ~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~ 188 (298)
||. +-+.+++..+-..+||+-||++.
T Consensus 861 ~TT------IIEtGIDIPnANTiIIe~AD~fG 886 (1139)
T COG1197 861 CTT------IIETGIDIPNANTIIIERADKFG 886 (1139)
T ss_pred Eee------eeecCcCCCCCceEEEecccccc
Confidence 995 34467899999999999999974
No 408
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.71 E-value=0.056 Score=45.96 Aligned_cols=44 Identities=14% Similarity=0.368 Sum_probs=29.6
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (298)
+..+.+++++||||||||... ..++..+... ..+++.+-...|+
T Consensus 124 v~~~~~ili~G~tGSGKTT~l-~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLL-NALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHH-HHHHHHCHTT--TSEEEEEESSS-S
T ss_pred cccceEEEEECCCccccchHH-HHHhhhcccc--ccceEEeccccce
Confidence 356789999999999999653 4555655443 2466666655554
No 409
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.69 E-value=0.25 Score=47.24 Aligned_cols=19 Identities=32% Similarity=0.386 Sum_probs=15.4
Q ss_pred CcEEEEcCCCCchHHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIAL 89 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~ 89 (298)
..+++.||.|+|||..+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 4679999999999976543
No 410
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.67 E-value=0.38 Score=44.68 Aligned_cols=53 Identities=21% Similarity=0.301 Sum_probs=37.2
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (298)
.|.-+++.+|+|+|||...+.-+..... ++.+++|++ ..|-..|+..+++.++
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~---~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA---NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 3467999999999999654444443332 245778776 6777888888887763
No 411
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.63 E-value=0.28 Score=39.88 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=26.3
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCc
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (298)
.|.-+.+.||+|+|||...+..+.+.... +.+++|+.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~---g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ---GKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 45678999999999996655444443322 4467877764
No 412
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=94.58 E-value=0.18 Score=45.11 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=27.4
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHhhccC-CCCeEEEEEcC
Q 022383 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-SREVQALILSP 109 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~-~~~~~~lil~p 109 (298)
..|.++++.|+||+||++.+. .++..... ..+|.+-|=|-
T Consensus 99 p~~~~vLi~GetGtGKel~A~--~iH~~s~r~~~~PFI~~NCa 139 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFAR--LIHALSARRAEAPFIAFNCA 139 (403)
T ss_pred CCCCcEEEecCCCccHHHHHH--HHHHhhhcccCCCEEEEEHH
Confidence 368899999999999997654 33333333 45666666553
No 413
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.56 E-value=0.12 Score=44.87 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchHHHH
Q 022383 71 RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~ 87 (298)
.++++.||+|+|||...
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56999999999999543
No 414
>PRK09165 replicative DNA helicase; Provisional
Probab=94.53 E-value=0.43 Score=44.44 Aligned_cols=145 Identities=16% Similarity=0.130 Sum_probs=70.2
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccC------------CCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEE-E
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTS------------SREVQALILSPTRELATQTEKVILAIGDFINIQAHA-C 135 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~------------~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~-~ 135 (298)
.|.-+++.|.+|+|||.-.+--+.+..... ..+..++|++ ...-..|+..++-..... +.... .
T Consensus 216 ~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fS-lEMs~~ql~~R~la~~s~--v~~~~i~ 292 (497)
T PRK09165 216 PSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFS-LEMSAEQLATRILSEQSE--ISSSKIR 292 (497)
T ss_pred CCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEe-CcCCHHHHHHHHHHHhcC--CCHHHHh
Confidence 445678889999999955443333322110 1244566664 334456666655433222 22111 1
Q ss_pred EcCCchHHHH------HHhhcCCcEEEe-----ChHHHHHHHhccCccCCCccEEEechhhHhhccc------cHHHHHH
Q 022383 136 VGGKSVGEDI------RKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG------FKDQIYD 198 (298)
Q Consensus 136 ~~~~~~~~~~------~~~~~~~~ilV~-----Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~------~~~~i~~ 198 (298)
.|.....+.. ..+ ...++.|- |++.+...++.-.. -..+++||||=.+.+...+ ....+..
T Consensus 293 ~~~l~~~e~~~l~~a~~~l-~~~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~~~~~~~~~~r~~ev~~ 370 (497)
T PRK09165 293 RGKISEEDFEKLVDASQEL-QKLPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIRGSSKRSSDNRVQEISE 370 (497)
T ss_pred cCCCCHHHHHHHHHHHHHH-hcCCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhccCCCCCCCCchHHHHHH
Confidence 2222222211 112 22345553 45555554443211 2358999999999875321 1123333
Q ss_pred HHHhCC-----CCccEEEEEeeCchh
Q 022383 199 VYRYLP-----PDLQVVLISATLPHE 219 (298)
Q Consensus 199 i~~~~~-----~~~~~v~~SAT~~~~ 219 (298)
+.+.+. .++.++++|. +++.
T Consensus 371 is~~LK~lAkel~ipVi~lsQ-LnR~ 395 (497)
T PRK09165 371 ITQGLKALAKELNIPVIALSQ-LSRQ 395 (497)
T ss_pred HHHHHHHHHHHhCCeEEEeec-ccch
Confidence 433332 2566777665 4444
No 415
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=94.50 E-value=1.1 Score=38.95 Aligned_cols=57 Identities=14% Similarity=0.313 Sum_probs=32.6
Q ss_pred HHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhC---CCCccEEEEEeeC
Q 022383 160 GRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL---PPDLQVVLISATL 216 (298)
Q Consensus 160 ~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~---~~~~~~v~~SAT~ 216 (298)
++++..+..+....+.--.+|+||+|.+.....+..+-.+++.- +.++-++++|..+
T Consensus 122 ~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrl 181 (408)
T KOG2228|consen 122 SKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRL 181 (408)
T ss_pred HHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccc
Confidence 34555555544444444678999999876555454444444443 3344566666554
No 416
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.50 E-value=0.052 Score=50.15 Aligned_cols=50 Identities=20% Similarity=0.261 Sum_probs=38.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (298)
.++++.||||||||..+.+|.+-.. ...+|+.=|--++...+...+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~-----~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNY-----PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhc-----cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 4799999999999999988876432 1257777799999888887766653
No 417
>PRK08840 replicative DNA helicase; Provisional
Probab=94.49 E-value=0.71 Score=42.55 Aligned_cols=144 Identities=18% Similarity=0.133 Sum_probs=68.7
Q ss_pred HhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE-EcCCchHHH
Q 022383 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VGGKSVGED 144 (298)
Q Consensus 66 ~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 144 (298)
-+..|.=+++-|.+|+|||.-.+-.+.+.... .+..++|++.- --..|+..++-.... ++....+ .|..+..+.
T Consensus 213 G~~~g~LiviaarPg~GKTafalnia~~~a~~--~~~~v~~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~ 287 (464)
T PRK08840 213 GLQGSDLIIVAARPSMGKTTFAMNLCENAAMD--QDKPVLIFSLE-MPAEQLMMRMLASLS--RVDQTKIRTGQLDDEDW 287 (464)
T ss_pred CCCCCceEEEEeCCCCchHHHHHHHHHHHHHh--CCCeEEEEecc-CCHHHHHHHHHHhhC--CCCHHHHhcCCCCHHHH
Confidence 34455667888999999995443333332212 13356666532 224455444432211 2211111 222222222
Q ss_pred H------HHhhcCCcEEEe-----ChHHHHHHHhccCccCCCccEEEechhhHhhccc----cHHHHHHHHHhCC-----
Q 022383 145 I------RKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLP----- 204 (298)
Q Consensus 145 ~------~~~~~~~~ilV~-----Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~----~~~~i~~i~~~~~----- 204 (298)
. ..+....++.|- |+..+....+.-......+++||||-.|.+...+ ....+..+.+.+.
T Consensus 288 ~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAke 367 (464)
T PRK08840 288 ARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKE 367 (464)
T ss_pred HHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 1 122223455553 3445544433321112358999999999885222 2233444443332
Q ss_pred CCccEEEEEe
Q 022383 205 PDLQVVLISA 214 (298)
Q Consensus 205 ~~~~~v~~SA 214 (298)
-++.++++|.
T Consensus 368 l~ipVi~LsQ 377 (464)
T PRK08840 368 LNVPVVALSQ 377 (464)
T ss_pred hCCeEEEEEe
Confidence 2677777763
No 418
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.49 E-value=0.58 Score=44.74 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=25.0
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
+...+++||||+|.+.... ...+...++..+...-+|+.+
T Consensus 119 ~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~tifIL~t 158 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYAIFILAT 158 (614)
T ss_pred cCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 3567899999999985432 344555555555545444433
No 419
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=94.47 E-value=0.21 Score=41.89 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=21.7
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhcc
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDT 97 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~ 97 (298)
+..|+.+++.||.|+|||.. +--+++.+..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL-lr~I~n~l~~ 42 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL-LQSIANAITK 42 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH-HHHHHhcccc
Confidence 45789999999999999953 3345554443
No 420
>PRK08506 replicative DNA helicase; Provisional
Probab=94.43 E-value=0.41 Score=44.26 Aligned_cols=141 Identities=20% Similarity=0.177 Sum_probs=69.6
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE-EcCCchHHH--
Q 022383 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VGGKSVGED-- 144 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 144 (298)
..|.-+++.|.+|+|||.-.+-.+.+.. . .+..++|++. .--..|+..++-.... ++....+ .|..+..+.
T Consensus 190 ~~G~LivIaarpg~GKT~fal~ia~~~~-~--~g~~V~~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e~~~ 263 (472)
T PRK08506 190 NKGDLIIIAARPSMGKTTLCLNMALKAL-N--QDKGVAFFSL-EMPAEQLMLRMLSAKT--SIPLQNLRTGDLDDDEWER 263 (472)
T ss_pred CCCceEEEEcCCCCChHHHHHHHHHHHH-h--cCCcEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHHH
Confidence 3456678889999999965444444433 2 2445666653 3345555555433221 2221111 222222221
Q ss_pred ----HHHhhcCCcEEEe-----ChHHHHHHHhccCccCCCccEEEechhhHhhccc----cHHHHHHHHHhCC-----CC
Q 022383 145 ----IRKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLP-----PD 206 (298)
Q Consensus 145 ----~~~~~~~~~ilV~-----Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~----~~~~i~~i~~~~~-----~~ 206 (298)
...+.+ ..+.|- |+..+...++.-......+++||||=.+.+...+ ....+..+.+.+. .+
T Consensus 264 ~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel~ 342 (472)
T PRK08506 264 LSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLARELD 342 (472)
T ss_pred HHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 112222 345552 4555554444311112358999999999885332 1223333333321 26
Q ss_pred ccEEEEEee
Q 022383 207 LQVVLISAT 215 (298)
Q Consensus 207 ~~~v~~SAT 215 (298)
+.++++|..
T Consensus 343 ipVi~lsQL 351 (472)
T PRK08506 343 IPIIALSQL 351 (472)
T ss_pred CcEEEEeec
Confidence 777777643
No 421
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=94.42 E-value=0.44 Score=43.60 Aligned_cols=142 Identities=17% Similarity=0.155 Sum_probs=68.5
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE-EcCCchHHH-
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VGGKSVGED- 144 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~- 144 (298)
+..|.-+++.|++|+|||.-.+--+.+.... .+..++|++. ..-..++..++..... ++....+ .|.....+.
T Consensus 192 ~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~--~g~~vl~~Sl-Em~~~~i~~R~~~~~~--~v~~~~~~~g~l~~~~~~ 266 (434)
T TIGR00665 192 LQPSDLIILAARPSMGKTAFALNIAENAAIK--EGKPVAFFSL-EMSAEQLAMRMLSSES--RVDSQKLRTGKLSDEDWE 266 (434)
T ss_pred CCCCeEEEEEeCCCCChHHHHHHHHHHHHHh--CCCeEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHhccCCCCHHHHH
Confidence 3345668889999999995444333333222 1335666653 3334555554433322 2221111 222222211
Q ss_pred -----HHHhhcCCcEEEe-----ChHHHHHHHhccCccCCCccEEEechhhHhhccc----cHHHHHHHHHhCC-----C
Q 022383 145 -----IRKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLP-----P 205 (298)
Q Consensus 145 -----~~~~~~~~~ilV~-----Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~----~~~~i~~i~~~~~-----~ 205 (298)
...+.+ ..+.|. |++.+...++.-... ..+++||||=.+.+...+ ....+..+.+.+. .
T Consensus 267 ~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~ 344 (434)
T TIGR00665 267 KLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKEL 344 (434)
T ss_pred HHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 122222 345542 445555444331111 247999999998874322 2233444433332 3
Q ss_pred CccEEEEEee
Q 022383 206 DLQVVLISAT 215 (298)
Q Consensus 206 ~~~~v~~SAT 215 (298)
++.++++|-.
T Consensus 345 ~i~vi~lsql 354 (434)
T TIGR00665 345 NVPVIALSQL 354 (434)
T ss_pred CCeEEEEecc
Confidence 5777777653
No 422
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.41 E-value=1.7 Score=37.97 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=21.6
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEc
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (298)
+-+.++||+|+|||....-.+.. +.. .+.+++++.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~-l~~--~g~~V~Li~ 149 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHK-YKA--QGKKVLLAA 149 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHH-HHh--cCCeEEEEe
Confidence 45788999999999664432222 222 244666665
No 423
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.40 E-value=0.61 Score=40.90 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=36.2
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCC-hHHHHHHHHHhhcCCcEEEEcCCCCchHHHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKP-SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~-~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~ 88 (298)
...+|.+.+=.+.+++.|++.-.-.+ +|-.-.--..+..-+.+++-+|.|+|||.++.
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAK 145 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAK 145 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHH
Confidence 44589998878888888877422211 11111111222345799999999999997644
No 424
>PRK07004 replicative DNA helicase; Provisional
Probab=94.38 E-value=0.39 Score=44.25 Aligned_cols=142 Identities=16% Similarity=0.165 Sum_probs=67.3
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE-EcCCchHHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VGGKSVGEDI 145 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 145 (298)
+..|.=+++.|.+|+|||.-.+--+.+.... .+..++|++. .--..|+..++-.... ++....+ .|.....+..
T Consensus 210 ~~~g~liviaarpg~GKT~~al~ia~~~a~~--~~~~v~~fSl-EM~~~ql~~R~la~~~--~v~~~~i~~g~l~~~e~~ 284 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFSMNIGEYVAVE--YGLPVAVFSM-EMPGTQLAMRMLGSVG--RLDQHRMRTGRLTDEDWP 284 (460)
T ss_pred CCCCceEEEEeCCCCCccHHHHHHHHHHHHH--cCCeEEEEeC-CCCHHHHHHHHHHhhc--CCCHHHHhcCCCCHHHHH
Confidence 3345667888999999995443333322222 1335666652 2223444443321111 1211111 2222222221
Q ss_pred ------HHhhcCCcEEEe-----ChHHHHHHHhccCccCCCccEEEechhhHhhccc----cHHHHHHHHHhCC-----C
Q 022383 146 ------RKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLP-----P 205 (298)
Q Consensus 146 ------~~~~~~~~ilV~-----Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~----~~~~i~~i~~~~~-----~ 205 (298)
..+ .+.++.|. |+..+....+.-......+++||||=.+.+...+ ....+..+.+.+. .
T Consensus 285 ~~~~a~~~l-~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel 363 (460)
T PRK07004 285 KLTHAVQKM-SEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKEL 363 (460)
T ss_pred HHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 222 23456663 4445544433311122358999999999885322 2233444444442 2
Q ss_pred CccEEEEEe
Q 022383 206 DLQVVLISA 214 (298)
Q Consensus 206 ~~~~v~~SA 214 (298)
+++++++|.
T Consensus 364 ~ipVi~lsQ 372 (460)
T PRK07004 364 DVPVIALSQ 372 (460)
T ss_pred CCeEEEEec
Confidence 577777765
No 425
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=94.37 E-value=0.99 Score=43.46 Aligned_cols=181 Identities=14% Similarity=0.091 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHC---CCCCChHHHHHHHHHhh--cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHH
Q 022383 40 IKDDLLRGIYQY---GFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (298)
Q Consensus 40 l~~~i~~~l~~~---~~~~~~~~Q~~~~~~~~--~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 114 (298)
|-+.+.+.++-. |+..++.-=.+.+.... +|-.+|+.-..|-|||+-.+- .+..+...-....+|+|+|-..|-
T Consensus 247 lapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVis-F~diflRhT~AKtVL~ivPiNTlQ 325 (1387)
T KOG1016|consen 247 LAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVIS-FSDIFLRHTKAKTVLVIVPINTLQ 325 (1387)
T ss_pred ehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEee-hhHHHhhcCccceEEEEEehHHHH
Confidence 455666666543 33334432233333222 355788999999999954221 111111112234799999977764
Q ss_pred HHHHHHHHHhhcc----C-----CceEEEEEcCCchHHHH-HHhhc---CCcEEEeChHHHHHHHhc-------------
Q 022383 115 TQTEKVILAIGDF----I-----NIQAHACVGGKSVGEDI-RKLEH---GVHVVSGTPGRVCDMIKR------------- 168 (298)
Q Consensus 115 ~q~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~-~~~~~---~~~ilV~Tp~~l~~~~~~------------- 168 (298)
.+...+..+... . .+.+.++..+....... +-+.+ .-.+++.--+++.-+...
T Consensus 326 -NWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~k 404 (1387)
T KOG1016|consen 326 -NWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLK 404 (1387)
T ss_pred -HHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccCCcccccc
Confidence 444455554332 1 24566676665544333 22222 224555555544322211
Q ss_pred -----------------------cCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHH
Q 022383 169 -----------------------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMT 224 (298)
Q Consensus 169 -----------------------~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~ 224 (298)
..+.-...++||.||-|++-. -...+-..++.++..+++|+....+.+.+.+.+
T Consensus 405 r~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN--~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYw 481 (1387)
T KOG1016|consen 405 RISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKN--ITAEISMALKAIRTRRRIVLTGYPLQNNLLEYW 481 (1387)
T ss_pred ccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceecc--chHHHHHHHHHhhhceeEEEeccccccchHHHh
Confidence 001114568999999999833 345555666777767778888888877655543
No 426
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=94.34 E-value=0.27 Score=48.45 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
+..+++.||+|+|||..+
T Consensus 347 ~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999654
No 427
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=94.33 E-value=0.49 Score=43.46 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=23.7
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
...++|||||+|.+.... ...+...++.-+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEEEe
Confidence 466899999999985443 334444555544445455443
No 428
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.31 E-value=0.26 Score=43.98 Aligned_cols=67 Identities=21% Similarity=0.262 Sum_probs=38.3
Q ss_pred hHHHHHHHHHh---hcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhh
Q 022383 57 SAIQQRAVMPI---IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIG 125 (298)
Q Consensus 57 ~~~Q~~~~~~~---~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (298)
.+.-.++++.+ -.|+-.+|.||.|+|||.. +..+.+.+....... .+|++-..+-.+++.+..+.+.
T Consensus 153 ~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~~nhFDv-~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 153 EDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL-LQNIANSITTNHPEV-HLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred cccceeeeeeecccccCceEEEeCCCCCChhHH-HHHHHHHHHhhcCCe-EEEEEEeCCchhHHHHHHHHhc
Confidence 34445555554 3789999999999999953 333555554432222 3343334444455555555553
No 429
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.28 E-value=0.43 Score=44.26 Aligned_cols=37 Identities=19% Similarity=0.413 Sum_probs=21.5
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVL 211 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~ 211 (298)
....++||||+|.+....+ ..+...+...+...-+|+
T Consensus 118 ~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPRTIFIL 154 (486)
T ss_pred CCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEE
Confidence 5678999999998854432 333344444333433333
No 430
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.27 E-value=0.066 Score=50.70 Aligned_cols=49 Identities=12% Similarity=-0.011 Sum_probs=40.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
+++++.||||||||..+++|-+-... ..+|++=|--|+...+....++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~-----~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE-----DSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC-----CCEEEEeCcHHHHHHHHHHHHHC
Confidence 58999999999999999999877642 25788889999998888877765
No 431
>PRK08006 replicative DNA helicase; Provisional
Probab=94.27 E-value=1 Score=41.61 Aligned_cols=144 Identities=18% Similarity=0.123 Sum_probs=70.4
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE-EcCCchHHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VGGKSVGEDI 145 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 145 (298)
+..|.=+++-|.+|+|||.-.+-.+.+.... .+..++|++. .--..|+..++-.... ++....+ .|..+..++.
T Consensus 221 l~~G~LiiIaarPgmGKTafalnia~~~a~~--~g~~V~~fSl-EM~~~ql~~Rlla~~~--~v~~~~i~~~~l~~~e~~ 295 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAMNLCENAAML--QDKPVLIFSL-EMPGEQIMMRMLASLS--RVDQTRIRTGQLDDEDWA 295 (471)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCeEEEEec-cCCHHHHHHHHHHHhc--CCCHHHhhcCCCCHHHHH
Confidence 3344567778999999995444333333222 1335666653 2233444444432221 2222111 2222322221
Q ss_pred ------HHhhcCCcEEEe-----ChHHHHHHHhccCccCCCccEEEechhhHhhcc----ccHHHHHHHHHhCC-----C
Q 022383 146 ------RKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR----GFKDQIYDVYRYLP-----P 205 (298)
Q Consensus 146 ------~~~~~~~~ilV~-----Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~----~~~~~i~~i~~~~~-----~ 205 (298)
..+.....+.|- |+..+....+.-......+++||||=.+.+... .....+..+.+.+. .
T Consensus 296 ~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel 375 (471)
T PRK08006 296 RISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKEL 375 (471)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 122133456653 455555544332112236899999999988532 12333444444432 2
Q ss_pred CccEEEEEee
Q 022383 206 DLQVVLISAT 215 (298)
Q Consensus 206 ~~~~v~~SAT 215 (298)
++.++++|..
T Consensus 376 ~ipVi~LsQL 385 (471)
T PRK08006 376 QVPVVALSQL 385 (471)
T ss_pred CCeEEEEEec
Confidence 6778887743
No 432
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.24 E-value=0.099 Score=41.80 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=24.6
Q ss_pred CChHHHHHHHHH-hhcCCcEEEEcCCCCchHHH
Q 022383 55 KPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 55 ~~~~~Q~~~~~~-~~~~~~~li~~pTG~GKT~~ 86 (298)
..++.|...+.. +..|..++++||||+|||..
T Consensus 9 ~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 9 TFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 345666666665 45788999999999999964
No 433
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.23 E-value=1 Score=38.27 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchHHH
Q 022383 71 RDVIAQAQSGTGKTSM 86 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~ 86 (298)
+++++.+|+|+|||..
T Consensus 112 ~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 112 LNTLIISPPQCGKTTL 127 (270)
T ss_pred eEEEEEcCCCCCHHHH
Confidence 6899999999999953
No 434
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.20 E-value=0.16 Score=41.77 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=26.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccC---CCCeEEEEEcCcH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTR 111 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~---~~~~~~lil~p~~ 111 (298)
.|+-+.+.||+|+|||...+..+....... .....++|+....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 356789999999999975554443333221 0124678887643
No 435
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=94.19 E-value=0.32 Score=44.53 Aligned_cols=74 Identities=12% Similarity=0.060 Sum_probs=47.5
Q ss_pred CCCCCChHHHHHHHHHhh----cCCcEEEEcCCCCchHHHHHHHHHHhhccCC-CCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 51 YGFEKPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~----~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
+-|...+|-|.+-.-.+. .+.+.++.+|+|+|||.+.+-.++.-...-+ ...+.|+.+-|..-.+.....++.+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 346677888876655443 4678999999999999876655555433333 2336667666665555555555443
No 436
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.26 Score=43.84 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchHHH
Q 022383 71 RDVIAQAQSGTGKTSM 86 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~ 86 (298)
+|+++.||+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 7999999999999964
No 437
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.18 E-value=0.55 Score=45.95 Aligned_cols=19 Identities=26% Similarity=0.454 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
..++++.||+|+|||...-
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999996543
No 438
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=94.17 E-value=0.19 Score=49.99 Aligned_cols=147 Identities=17% Similarity=0.174 Sum_probs=80.1
Q ss_pred CccccCcccCCCCHHHHHHHHHCCCC-CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEE
Q 022383 29 VEAITSFDAMGIKDDLLRGIYQYGFE-KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (298)
Q Consensus 29 ~~~~~~~~~l~l~~~i~~~l~~~~~~-~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil 107 (298)
......|+++|....++.-|+++-+. -++|-+..- -.+..-+.+++++|.|+|||+.+--.+-+. ... +.++-+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~-~~itpPrgvL~~GppGTGkTl~araLa~~~-s~~--~~kisf- 332 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDN-FNITPPRGVLFHGPPGTGKTLMARALAAAC-SRG--NRKISF- 332 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhh-cccCCCcceeecCCCCCchhHHHHhhhhhh-ccc--ccccch-
Confidence 34567899999888888889887433 222211111 123455789999999999997532111111 110 001111
Q ss_pred cCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHh
Q 022383 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (298)
Q Consensus 108 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~ 187 (298)
..++-. .....-|+.+++=++++.... .-.....+-+||+|-+
T Consensus 333 ------------fmrkga------------------------D~lskwvgEaERqlrllFeeA-~k~qPSIIffdeIdGl 375 (1080)
T KOG0732|consen 333 ------------FMRKGA------------------------DCLSKWVGEAERQLRLLFEEA-QKTQPSIIFFDEIDGL 375 (1080)
T ss_pred ------------hhhcCc------------------------hhhccccCcHHHHHHHHHHHH-hccCceEEeccccccc
Confidence 000100 001334566666555554321 1235567889999954
Q ss_pred hccc----------cHHHHHHHHHhCCCCccEEEEEeeCc
Q 022383 188 LSRG----------FKDQIYDVYRYLPPDLQVVLISATLP 217 (298)
Q Consensus 188 ~~~~----------~~~~i~~i~~~~~~~~~~v~~SAT~~ 217 (298)
.-.. ....+..++.-++...|+++++||.-
T Consensus 376 apvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 376 APVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred cccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 3111 12333444555567899999999973
No 439
>PRK10689 transcription-repair coupling factor; Provisional
Probab=94.15 E-value=0.77 Score=47.11 Aligned_cols=79 Identities=11% Similarity=0.104 Sum_probs=61.2
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.+++|++|+++-++.+.+.+++... +.++..++|+.+..+....+ .+..+|+|||. + -..++++.++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd-----I-ierGIDIP~v 880 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----I-IETGIDIPTA 880 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc-----h-hhcccccccC
Confidence 45899999999999999988887643 46788899998776544332 26789999995 2 2347899999
Q ss_pred cEEEechhhHh
Q 022383 177 KLLVLDESDEM 187 (298)
Q Consensus 177 ~~vViDE~h~~ 187 (298)
++||++.+|++
T Consensus 881 ~~VIi~~ad~f 891 (1147)
T PRK10689 881 NTIIIERADHF 891 (1147)
T ss_pred CEEEEecCCCC
Confidence 99999998864
No 440
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.56 Score=43.21 Aligned_cols=69 Identities=23% Similarity=0.260 Sum_probs=40.8
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHH-------hhc-C----CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEE
Q 022383 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVMP-------IIK-G----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (298)
Q Consensus 38 l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-------~~~-~----~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~l 105 (298)
+|.+.+..+.+...|+-.-.+.=.+.+.. +.. . .++++.||.|+|||.-++-.+ ....-|.+=
T Consensus 494 FG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA-----~~S~FPFvK 568 (744)
T KOG0741|consen 494 FGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIA-----LSSDFPFVK 568 (744)
T ss_pred cCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHH-----hhcCCCeEE
Confidence 46777777777776654333333333321 111 1 379999999999995433222 233456777
Q ss_pred EEcCcH
Q 022383 106 ILSPTR 111 (298)
Q Consensus 106 il~p~~ 111 (298)
+++|..
T Consensus 569 iiSpe~ 574 (744)
T KOG0741|consen 569 IISPED 574 (744)
T ss_pred EeChHH
Confidence 888853
No 441
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.55 Score=44.80 Aligned_cols=108 Identities=24% Similarity=0.349 Sum_probs=61.8
Q ss_pred ChHHHHHHHHHhh--------cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 022383 56 PSAIQQRAVMPII--------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (298)
Q Consensus 56 ~~~~Q~~~~~~~~--------~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (298)
+..+-.+++..+. +|+-+.++||+|.|||.. +..+++.+.+- +
T Consensus 416 m~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI---------------------------~kSIA~ALnRk--F 466 (906)
T KOG2004|consen 416 MEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSI---------------------------AKSIARALNRK--F 466 (906)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccH---------------------------HHHHHHHhCCc--e
Confidence 5555666666554 467888999999999943 22223222111 0
Q ss_pred CCceEEEEEcCCchHHHHHHhhcCCcEEEe-ChHHHHHHHhc-cCccCCCccEEEechhhHhhccccHHHHHHHHHhC
Q 022383 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSG-TPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (298)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~-Tp~~l~~~~~~-~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~ 203 (298)
.-...||...- ..+.+..+-+|+ -|+++...++. +.-+. ++.|||+|.+.....++.--.++..+
T Consensus 467 ----fRfSvGG~tDv---AeIkGHRRTYVGAMPGkiIq~LK~v~t~NP----liLiDEvDKlG~g~qGDPasALLElL 533 (906)
T KOG2004|consen 467 ----FRFSVGGMTDV---AEIKGHRRTYVGAMPGKIIQCLKKVKTENP----LILIDEVDKLGSGHQGDPASALLELL 533 (906)
T ss_pred ----EEEeccccccH---HhhcccceeeeccCChHHHHHHHhhCCCCc----eEEeehhhhhCCCCCCChHHHHHHhc
Confidence 11223443322 233333455665 59999998877 33333 78999999998443344444444444
No 442
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.46 Score=41.04 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=40.0
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhc--cCCCCeEEEEE------------cCcHHHHHHHHHHHHHhhccCCceEEEE
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVD--TSSREVQALIL------------SPTRELATQTEKVILAIGDFINIQAHAC 135 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~--~~~~~~~~lil------------~p~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (298)
+|-+++.||+|+|||. ..-++.+++. ...+..+..++ .-+-.|+.++++.++.+.+..+.-++++
T Consensus 177 NRliLlhGPPGTGKTS-LCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTS-LCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhH-HHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3568999999999993 3334445442 22222222222 2334677788888888877777666665
Q ss_pred E
Q 022383 136 V 136 (298)
Q Consensus 136 ~ 136 (298)
.
T Consensus 256 I 256 (423)
T KOG0744|consen 256 I 256 (423)
T ss_pred e
Confidence 4
No 443
>PF12846 AAA_10: AAA-like domain
Probab=94.06 E-value=0.074 Score=45.67 Aligned_cols=41 Identities=17% Similarity=0.382 Sum_probs=27.1
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 114 (298)
+++++.|+||+|||......+...+.. +..++++=|..+..
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~---g~~~~i~D~~g~~~ 42 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRR---GPRVVIFDPKGDYS 42 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHc---CCCEEEEcCCchHH
Confidence 578999999999997766444343333 34566665554433
No 444
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.02 E-value=0.82 Score=44.80 Aligned_cols=17 Identities=24% Similarity=0.493 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchHHHH
Q 022383 71 RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~ 87 (298)
.|+++.||+|+|||...
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999654
No 445
>PRK05748 replicative DNA helicase; Provisional
Probab=94.02 E-value=0.61 Score=42.87 Aligned_cols=143 Identities=15% Similarity=0.169 Sum_probs=68.2
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEE-EEcCCchHHH-
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA-CVGGKSVGED- 144 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 144 (298)
+..|.-++|.|++|+|||.-.+-.+.+.... .+..++|++ ...-..|+..++-.... ++.... ..|.....+.
T Consensus 200 ~~~G~livIaarpg~GKT~~al~ia~~~a~~--~g~~v~~fS-lEms~~~l~~R~l~~~~--~v~~~~i~~~~l~~~e~~ 274 (448)
T PRK05748 200 LQPNDLIIVAARPSVGKTAFALNIAQNVATK--TDKNVAIFS-LEMGAESLVMRMLCAEG--NIDAQRLRTGQLTDDDWP 274 (448)
T ss_pred CCCCceEEEEeCCCCCchHHHHHHHHHHHHh--CCCeEEEEe-CCCCHHHHHHHHHHHhc--CCCHHHhhcCCCCHHHHH
Confidence 3345668889999999995444333332222 133566654 33344555555432211 221111 1222222221
Q ss_pred -----HHHhhcCCcEEEe-----ChHHHHHHHhccCccCCCccEEEechhhHhhccc-----cHHHHHHHHHhCC-----
Q 022383 145 -----IRKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----FKDQIYDVYRYLP----- 204 (298)
Q Consensus 145 -----~~~~~~~~~ilV~-----Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~-----~~~~i~~i~~~~~----- 204 (298)
...+ .+.++.|. |++.+...++.-......+++||||=.+.+...+ ....+..+.+.+.
T Consensus 275 ~~~~a~~~l-~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke 353 (448)
T PRK05748 275 KLTIAMGSL-SDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKE 353 (448)
T ss_pred HHHHHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 1122 22345553 4455554443311111268999999999884221 1233434444331
Q ss_pred CCccEEEEEee
Q 022383 205 PDLQVVLISAT 215 (298)
Q Consensus 205 ~~~~~v~~SAT 215 (298)
.++.++++|..
T Consensus 354 ~~i~vi~lsQl 364 (448)
T PRK05748 354 LKVPVIALSQL 364 (448)
T ss_pred hCCeEEEeccc
Confidence 25667776664
No 446
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.99 E-value=0.11 Score=45.49 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
.++++.||+|+|||....
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 579999999999996544
No 447
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=93.95 E-value=0.45 Score=45.94 Aligned_cols=39 Identities=13% Similarity=0.258 Sum_probs=23.1
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
.+.+++||||+|.|.... ...+...+..-+....+|+++
T Consensus 117 g~~KV~IIDEa~~LT~~A-~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSA-FNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred CCCEEEEEEChhhCCHHH-HHHHHHHhhcCCCceEEEEEc
Confidence 577899999999985443 333344444444444444433
No 448
>CHL00176 ftsH cell division protein; Validated
Probab=93.94 E-value=0.41 Score=45.89 Aligned_cols=55 Identities=16% Similarity=0.233 Sum_probs=30.9
Q ss_pred ccccCcccCCCCHHHHHHHHHC-C-CCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 30 EAITSFDAMGIKDDLLRGIYQY-G-FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 30 ~~~~~~~~l~l~~~i~~~l~~~-~-~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
+...+|+++.--+.....+.+. . +..+..++... ....+.+++.||+|+|||..+
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g---~~~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVG---AKIPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhcc---CCCCceEEEECCCCCCHHHHH
Confidence 3446788876445555555553 1 11222111110 122467999999999999653
No 449
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.05 Score=46.59 Aligned_cols=57 Identities=14% Similarity=0.216 Sum_probs=33.9
Q ss_pred ccCcccCCCCHHHHHHHHHC--CCC--------CChHHHHHHHHH------hhcCCcEEEEcCCCCchHHHHH
Q 022383 32 ITSFDAMGIKDDLLRGIYQY--GFE--------KPSAIQQRAVMP------IIKGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 32 ~~~~~~l~l~~~i~~~l~~~--~~~--------~~~~~Q~~~~~~------~~~~~~~li~~pTG~GKT~~~~ 88 (298)
..+.++++-+.+|...|-+. |-. ..+.+-.+.-.. -+...|+++.||||||||+.+.
T Consensus 43 ~~~~~~lPtP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 43 EKELSELPTPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred chhhccCCChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHH
Confidence 34566777788888887552 211 122232322211 1233589999999999997654
No 450
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.84 E-value=0.55 Score=39.34 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=27.7
Q ss_pred CccEEEechhhHhh-ccccH-------HHHHHHHHhC---CCCccEEEEEeeCchhHH
Q 022383 175 AIKLLVLDESDEML-SRGFK-------DQIYDVYRYL---PPDLQVVLISATLPHEIL 221 (298)
Q Consensus 175 ~l~~vViDE~h~~~-~~~~~-------~~i~~i~~~~---~~~~~~v~~SAT~~~~~~ 221 (298)
....|.+||.|.+. +..|+ ..+..++..+ ..+--++.+.||-.+++.
T Consensus 210 aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~L 267 (368)
T COG1223 210 APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELL 267 (368)
T ss_pred CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhc
Confidence 34678899999874 33333 2334444433 234557888899765443
No 451
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=93.80 E-value=0.52 Score=44.74 Aligned_cols=75 Identities=8% Similarity=0.143 Sum_probs=56.9
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh----cCCcEEEeChHHHHHHHhccCccCCC
Q 022383 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRA 175 (298)
Q Consensus 100 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~~~~~~~~~~~~~ 175 (298)
.+.++||.|+++..++++.+.+.+. ++.+..++|+.+..+....+. +..+|+|+|. . -...+++.+
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v-~arGIDip~ 325 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----V-AARGLHIDG 325 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----h-hhcCCCccC
Confidence 3558999999999999999988764 678999999877665543332 5679999994 2 234688899
Q ss_pred ccEEEechh
Q 022383 176 IKLLVLDES 184 (298)
Q Consensus 176 l~~vViDE~ 184 (298)
+++||.-+.
T Consensus 326 V~~VInyd~ 334 (572)
T PRK04537 326 VKYVYNYDL 334 (572)
T ss_pred CCEEEEcCC
Confidence 999886554
No 452
>PRK08760 replicative DNA helicase; Provisional
Probab=93.80 E-value=0.62 Score=43.12 Aligned_cols=143 Identities=20% Similarity=0.194 Sum_probs=69.5
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHH--
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED-- 144 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 144 (298)
+..|.=++|.|.+|+|||.-.+-.+.+..... +..++|++. ..-..|+..++........... ...|.....+.
T Consensus 226 ~~~G~LivIaarPg~GKTafal~iA~~~a~~~--g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~-i~~g~l~~~e~~~ 301 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFALNIAEYAAIKS--KKGVAVFSM-EMSASQLAMRLISSNGRINAQR-LRTGALEDEDWAR 301 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHHHHHHHHHHhc--CCceEEEec-cCCHHHHHHHHHHhhCCCcHHH-HhcCCCCHHHHHH
Confidence 33456678889999999955443333322221 335666653 3334566655544332222111 11222222221
Q ss_pred ----HHHhhcCCcEEEe-----ChHHHHHHHhccCccCCCccEEEechhhHhhccc----cHHHHHHHHHhCC-----CC
Q 022383 145 ----IRKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLP-----PD 206 (298)
Q Consensus 145 ----~~~~~~~~~ilV~-----Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~----~~~~i~~i~~~~~-----~~ 206 (298)
...+ ....+.|. |++.+...++.-. .-..+++||||=.+.+...+ ....+..+.+.+. .+
T Consensus 302 ~~~a~~~l-~~~~l~I~d~~~~t~~~I~~~~r~l~-~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel~ 379 (476)
T PRK08760 302 VTGAIKML-KETKIFIDDTPGVSPEVLRSKCRRLK-REHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKELN 379 (476)
T ss_pred HHHHHHHH-hcCCEEEeCCCCCCHHHHHHHHHHHH-HhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHhC
Confidence 1122 22455554 4556555444311 11358999999999884222 2233444433332 25
Q ss_pred ccEEEEEee
Q 022383 207 LQVVLISAT 215 (298)
Q Consensus 207 ~~~v~~SAT 215 (298)
+.++++|..
T Consensus 380 ipVi~lsQL 388 (476)
T PRK08760 380 VPVIALSQL 388 (476)
T ss_pred CEEEEeecc
Confidence 667776643
No 453
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=93.76 E-value=0.32 Score=44.47 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=56.8
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh----cCCcEEEeChHHHHHHHhccCccCCC
Q 022383 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRA 175 (298)
Q Consensus 100 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~~~~~~~~~~~~~ 175 (298)
..+.+||.++++.-|+-+++.+.+. ++++..+||+.+..+....+. +..+|+|||. .-..+++..+
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------vAgRGIDIpn 585 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD------VAGRGIDIPN 585 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------ccccCCCCCc
Confidence 4567999999999999999988876 689999999988877655543 3679999996 2235788888
Q ss_pred ccEEE
Q 022383 176 IKLLV 180 (298)
Q Consensus 176 l~~vV 180 (298)
+++||
T Consensus 586 VSlVi 590 (673)
T KOG0333|consen 586 VSLVI 590 (673)
T ss_pred cceee
Confidence 88887
No 454
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.73 E-value=0.21 Score=42.43 Aligned_cols=46 Identities=11% Similarity=0.300 Sum_probs=29.1
Q ss_pred HHHHCCCCCChHHHHHHHHHhhc--CCcEEEEcCCCCchHHHHHHHHHHhhc
Q 022383 47 GIYQYGFEKPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVD 96 (298)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~--~~~~li~~pTG~GKT~~~~~~~~~~~~ 96 (298)
.|.+.|+ .+.|.+.+..+.. +..+++.||||||||... ..++..+.
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~ 105 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELN 105 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhC
Confidence 4556664 4456666655443 346899999999999643 34555543
No 455
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.72 E-value=0.71 Score=37.99 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=33.6
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
.|..+++.|++|+|||.-.+--+...+.. +..++|+.- .+-.+++.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~---g~~~~y~s~-e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN---GEKAMYISL-EEREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEEC-CCCHHHHHHHHHHc
Confidence 35678999999999985433334443332 446777754 44567777776655
No 456
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=93.71 E-value=0.27 Score=43.34 Aligned_cols=63 Identities=17% Similarity=0.230 Sum_probs=38.6
Q ss_pred HHHHHHCCCCCChHHHHHHHHHh-hcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHH
Q 022383 45 LRGIYQYGFEKPSAIQQRAVMPI-IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (298)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~~~-~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (298)
...|.+.|+ +++.+...+..+ ..+++++++|+||+|||.. +-.++..+.. ..+.+.+-...|+
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTl-l~al~~~i~~---~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTTL-LSALLALVAP---DERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH-HHHHHccCCC---CCcEEEECCccee
Confidence 445555554 345566665554 4678999999999999953 3334444332 2355666666555
No 457
>PRK09087 hypothetical protein; Validated
Probab=93.66 E-value=0.19 Score=41.60 Aligned_cols=40 Identities=8% Similarity=0.120 Sum_probs=22.8
Q ss_pred cEEEechhhHhhccccHHHHHHHHHhCCC-CccEEEEEeeCch
Q 022383 177 KLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVVLISATLPH 218 (298)
Q Consensus 177 ~~vViDE~h~~~~~~~~~~i~~i~~~~~~-~~~~v~~SAT~~~ 218 (298)
+++++||+|.+. .-...+..++..+.. ..++++.|.+.|+
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~ 129 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPS 129 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChH
Confidence 389999999763 224445556655544 4444444444443
No 458
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.61 E-value=0.1 Score=43.20 Aligned_cols=14 Identities=21% Similarity=0.729 Sum_probs=12.2
Q ss_pred EEEEcCCCCchHHH
Q 022383 73 VIAQAQSGTGKTSM 86 (298)
Q Consensus 73 ~li~~pTG~GKT~~ 86 (298)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999975
No 459
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.61 E-value=1.3 Score=41.02 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=71.4
Q ss_pred CCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHH---hh-cCCcE
Q 022383 79 SGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---LE-HGVHV 154 (298)
Q Consensus 79 TG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~i 154 (298)
.++||+..-++++.+.+... ..|.++|.+.+.+-+.|++..+. ...++.+..++|..+..+.... .. +...+
T Consensus 366 vF~gse~~K~lA~rq~v~~g-~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iwv 441 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASG-FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRIGKIWV 441 (593)
T ss_pred eeeecchhHHHHHHHHHhcc-CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhccCeeE
Confidence 47788877666666655554 56678999999999999998776 3457889999998665544333 22 55789
Q ss_pred EEeChHHHHHHHhccCccCCCccEEEechhh
Q 022383 155 VSGTPGRVCDMIKRKTLRTRAIKLLVLDESD 185 (298)
Q Consensus 155 lV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h 185 (298)
+|||. ++.+ ++++..+.+||-+++-
T Consensus 442 LicTd-----ll~R-GiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 442 LICTD-----LLAR-GIDFKGVNLVINYDFP 466 (593)
T ss_pred EEehh-----hhhc-cccccCcceEEecCCC
Confidence 99994 4444 4899999999998874
No 460
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=3.1 Score=35.71 Aligned_cols=154 Identities=12% Similarity=0.130 Sum_probs=82.1
Q ss_pred CccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcC-----CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeE
Q 022383 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-----RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQ 103 (298)
Q Consensus 29 ~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~-----~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~ 103 (298)
.+|...|++..=-+...++|++.=+- |- =+|++..| +.+++-+|.|+||+..+- + +.... + .
T Consensus 126 EKPNVkWsDVAGLE~AKeALKEAVIL-PI-----KFPqlFtGkR~PwrgiLLyGPPGTGKSYLAK--A---VATEA-n-S 192 (439)
T KOG0739|consen 126 EKPNVKWSDVAGLEGAKEALKEAVIL-PI-----KFPQLFTGKRKPWRGILLYGPPGTGKSYLAK--A---VATEA-N-S 192 (439)
T ss_pred cCCCCchhhhccchhHHHHHHhheee-cc-----cchhhhcCCCCcceeEEEeCCCCCcHHHHHH--H---HHhhc-C-C
Confidence 45666788775556667777764222 11 14566666 368999999999994221 1 11211 1 4
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEech
Q 022383 104 ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDE 183 (298)
Q Consensus 104 ~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE 183 (298)
+.|-+.+..|+..+...-.++- ..|..+.++ +..+.|.|||
T Consensus 193 TFFSvSSSDLvSKWmGESEkLV----------------------------------knLFemARe-----~kPSIIFiDE 233 (439)
T KOG0739|consen 193 TFFSVSSSDLVSKWMGESEKLV----------------------------------KNLFEMARE-----NKPSIIFIDE 233 (439)
T ss_pred ceEEeehHHHHHHHhccHHHHH----------------------------------HHHHHHHHh-----cCCcEEEeeh
Confidence 5666677666655443222221 122334443 3567899999
Q ss_pred hhHhhccc--------cHHHHHHHHHhCC---CCccEEEEEeeCchh-HHHHHHhcCCCCEEE
Q 022383 184 SDEMLSRG--------FKDQIYDVYRYLP---PDLQVVLISATLPHE-ILEMTTKFMTDPVKI 234 (298)
Q Consensus 184 ~h~~~~~~--------~~~~i~~i~~~~~---~~~~~v~~SAT~~~~-~~~~~~~~~~~~~~~ 234 (298)
+|.+.... .+-..+.+..+.. .+--++.+.||--+. +...+++.+...+.+
T Consensus 234 iDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI 296 (439)
T KOG0739|consen 234 IDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI 296 (439)
T ss_pred hhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec
Confidence 99875432 1112222333332 234577888886443 333444444444433
No 461
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.58 E-value=0.16 Score=44.92 Aligned_cols=17 Identities=18% Similarity=0.010 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCchHHHH
Q 022383 71 RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~ 87 (298)
+-+++.||.|+|||+..
T Consensus 149 lgllL~GPPGcGKTllA 165 (413)
T PLN00020 149 LILGIWGGKGQGKSFQC 165 (413)
T ss_pred eEEEeeCCCCCCHHHHH
Confidence 46889999999999653
No 462
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.53 E-value=0.86 Score=41.99 Aligned_cols=111 Identities=14% Similarity=0.260 Sum_probs=82.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh----cCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.+++|.+-|+-.+.++.+.+... |+++.++|++.+.-+....+. +.+|++||- +++++ ++++..+
T Consensus 446 ~eRvLVTtLTKkmAEdLT~Yl~e~----gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLLRE-GLDiPEV 515 (663)
T COG0556 446 NERVLVTTLTKKMAEDLTEYLKEL----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLRE-GLDLPEV 515 (663)
T ss_pred CCeEEEEeehHHHHHHHHHHHHhc----CceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhhhc-cCCCcce
Confidence 468999999999999998887765 899999999988877765543 568999996 35554 6889999
Q ss_pred cEEEechhhHhhccccH----HHHHHHHHhCC-CCccEEEEEeeCchhHHHHH
Q 022383 177 KLLVLDESDEMLSRGFK----DQIYDVYRYLP-PDLQVVLISATLPHEILEMT 224 (298)
Q Consensus 177 ~~vViDE~h~~~~~~~~----~~i~~i~~~~~-~~~~~v~~SAT~~~~~~~~~ 224 (298)
++|.|=+||. .||. ..|+.+-+.-+ .+-++|+..-.++.++...+
T Consensus 516 sLVAIlDADK---eGFLRse~SLIQtIGRAARN~~GkvIlYAD~iT~sM~~Ai 565 (663)
T COG0556 516 SLVAILDADK---EGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAI 565 (663)
T ss_pred eEEEEeecCc---cccccccchHHHHHHHHhhccCCeEEEEchhhhHHHHHHH
Confidence 9999999997 5543 34444433332 35678888777777665533
No 463
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.53 E-value=0.19 Score=46.53 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=29.9
Q ss_pred HHHHCCCCCChHHHHHHHHHhhcC-C-cEEEEcCCCCchHHHHHHHHHHhhcc
Q 022383 47 GIYQYGFEKPSAIQQRAVMPIIKG-R-DVIAQAQSGTGKTSMIALTVCQTVDT 97 (298)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~~-~-~~li~~pTG~GKT~~~~~~~~~~~~~ 97 (298)
.|.++|+ .+.|.+.+..+... + -++++||||||||... ..++..+..
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l~~ 268 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRLNT 268 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhccCC
Confidence 4455554 45666666665543 3 4789999999999653 335555543
No 464
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.49 E-value=0.93 Score=41.69 Aligned_cols=52 Identities=19% Similarity=0.395 Sum_probs=33.1
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
.|.-+++.|++|+|||.-.+..+.+ +... +.+++|+.. .+-..|+..+.+++
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~-~a~~--g~kvlYvs~-EEs~~qi~~ra~rl 144 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQ-LAKN--QMKVLYVSG-EESLQQIKMRAIRL 144 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH-HHhc--CCcEEEEEC-cCCHHHHHHHHHHc
Confidence 3567899999999999654443333 2222 346888875 34556776655554
No 465
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.47 E-value=0.16 Score=44.20 Aligned_cols=53 Identities=19% Similarity=0.208 Sum_probs=34.0
Q ss_pred ChHHHH-HHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHH
Q 022383 56 PSAIQQ-RAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (298)
Q Consensus 56 ~~~~Q~-~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (298)
+++.|. ..|-.+-.+++++++|+||||||. ++.+++..+-. ..+.+.+=-+.+
T Consensus 128 ~~~~~~ayL~~~ie~~~siii~G~t~sGKTt-~lnall~~Ip~---~~rivtIEdt~E 181 (312)
T COG0630 128 ISPEQAAYLWLAIEARKSIIICGGTASGKTT-LLNALLDFIPP---EERIVTIEDTPE 181 (312)
T ss_pred CCHHHHHHHHHHHHcCCcEEEECCCCCCHHH-HHHHHHHhCCc---hhcEEEEecccc
Confidence 344443 466677789999999999999994 45555555433 224555444443
No 466
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=93.45 E-value=0.26 Score=47.62 Aligned_cols=70 Identities=20% Similarity=0.252 Sum_probs=53.9
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCC-CeEEEEEcCcHHHHHHHHHHHHHhhc
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR-EVQALILSPTRELATQTEKVILAIGD 126 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~-~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (298)
.+++-|.+++... ...++|.|..|||||.+..--+...+....- ...++.++=|+.-|.++.+++.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999998766 6788999999999998765555555544322 23688888899999999999988765
No 467
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.45 E-value=0.18 Score=43.81 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=17.3
Q ss_pred hhcCCcEEEEcCCCCchHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~ 86 (298)
+..+.+++++||||+|||..
T Consensus 141 v~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hhCCCEEEEECCCCCCHHHH
Confidence 44788999999999999954
No 468
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=93.40 E-value=0.13 Score=49.27 Aligned_cols=157 Identities=23% Similarity=0.194 Sum_probs=92.3
Q ss_pred CCCChHHHHHHHHHhh--------cC--CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHH
Q 022383 53 FEKPSAIQQRAVMPII--------KG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (298)
Q Consensus 53 ~~~~~~~Q~~~~~~~~--------~~--~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 122 (298)
..+++..|.+++-... +| -..+|--..|.||-....-.|++...+. ..++|+++-+..|--+..+-++
T Consensus 262 sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkG--RKrAlW~SVSsDLKfDAERDL~ 339 (1300)
T KOG1513|consen 262 SGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKG--RKRALWFSVSSDLKFDAERDLR 339 (1300)
T ss_pred ccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcc--cceeEEEEeccccccchhhchh
Confidence 3568888988886544 23 2455555566666544333355555554 3489999999999888888887
Q ss_pred HhhccCCceEEEEEc----CCchHHHHHHhhcCCcEEEeChHHHHHHHhcc-------------CccCCCccEEEechhh
Q 022383 123 AIGDFINIQAHACVG----GKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-------------TLRTRAIKLLVLDESD 185 (298)
Q Consensus 123 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~-------------~~~~~~l~~vViDE~h 185 (298)
.++.. ++.+..+.. .++.++. -.-.-.++++|-..|.--.+.. ..--..=.+|||||||
T Consensus 340 DigA~-~I~V~alnK~KYakIss~en---~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECH 415 (1300)
T KOG1513|consen 340 DIGAT-GIAVHALNKFKYAKISSKEN---TNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECH 415 (1300)
T ss_pred hcCCC-Cccceehhhccccccccccc---CCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhh
Confidence 76532 455444321 1111110 0011268999876664322210 0001334689999999
Q ss_pred Hhhcc---------ccHHHHHHHHHhCCCCccEEEEEeeC
Q 022383 186 EMLSR---------GFKDQIYDVYRYLPPDLQVVLISATL 216 (298)
Q Consensus 186 ~~~~~---------~~~~~i~~i~~~~~~~~~~v~~SAT~ 216 (298)
.--.- ..+..+..+-+.+| +.++|.-|||=
T Consensus 416 kAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATG 454 (1300)
T KOG1513|consen 416 KAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATG 454 (1300)
T ss_pred hhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccC
Confidence 85321 14556667777776 68899999994
No 469
>PRK05595 replicative DNA helicase; Provisional
Probab=93.39 E-value=1.2 Score=40.89 Aligned_cols=140 Identities=14% Similarity=0.146 Sum_probs=66.1
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE-EcCCchHHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VGGKSVGEDIRK 147 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 147 (298)
.|.-+++-|.||+|||.-.+--+.+.... .+..++|++. ..-..|+..++-.... ++....+ .|.....+. ..
T Consensus 200 ~g~liviaarpg~GKT~~al~ia~~~a~~--~g~~vl~fSl-Ems~~~l~~R~~a~~~--~v~~~~~~~~~l~~~e~-~~ 273 (444)
T PRK05595 200 KGDMILIAARPSMGKTTFALNIAEYAALR--EGKSVAIFSL-EMSKEQLAYKLLCSEA--NVDMLRLRTGNLEDKDW-EN 273 (444)
T ss_pred CCcEEEEEecCCCChHHHHHHHHHHHHHH--cCCcEEEEec-CCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHH-HH
Confidence 44567788999999995444333322111 2445676654 2234555554433222 2221111 222222221 11
Q ss_pred hh------cCCcEEEe-----ChHHHHHHHhccCccCCCccEEEechhhHhhccc----cHHHHHHHHHhCC-----CCc
Q 022383 148 LE------HGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLP-----PDL 207 (298)
Q Consensus 148 ~~------~~~~ilV~-----Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~----~~~~i~~i~~~~~-----~~~ 207 (298)
+. ...++.|- |++.+...++.-.. -..+++||||=.+.+...+ ....+..+.+.+. .++
T Consensus 274 ~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~~i 352 (444)
T PRK05595 274 IARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEMEC 352 (444)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhCC
Confidence 11 12345442 34444444433111 1358999999999985322 1233444433332 256
Q ss_pred cEEEEEee
Q 022383 208 QVVLISAT 215 (298)
Q Consensus 208 ~~v~~SAT 215 (298)
.++++|..
T Consensus 353 ~vi~lsQL 360 (444)
T PRK05595 353 PVIALSQL 360 (444)
T ss_pred eEEEeecc
Confidence 67777543
No 470
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=93.39 E-value=3.5 Score=39.83 Aligned_cols=114 Identities=13% Similarity=0.180 Sum_probs=72.8
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCC
Q 022383 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (298)
Q Consensus 100 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~ 175 (298)
.+.+++|.|+++..+..+.+.+.+. ++.+..++|+....+....+ .+..+|+|||- .+ ..++++..
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~-----~L-~rGfDiP~ 510 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN-----LL-REGLDLPE 510 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC-----hh-cCCeeeCC
Confidence 3568999999999999999888765 67888888886655443322 25678999983 22 35788999
Q ss_pred ccEEEechhhHhhcc-ccHHHHHHHHHhCC-CCccEEEEEeeCchhHHHH
Q 022383 176 IKLLVLDESDEMLSR-GFKDQIYDVYRYLP-PDLQVVLISATLPHEILEM 223 (298)
Q Consensus 176 l~~vViDE~h~~~~~-~~~~~i~~i~~~~~-~~~~~v~~SAT~~~~~~~~ 223 (298)
+++||+-|++...-. .....++.+-+--+ .....+++-...+..+...
T Consensus 511 v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~a 560 (655)
T TIGR00631 511 VSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKA 560 (655)
T ss_pred CcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHH
Confidence 999998888764322 22233333322222 2344555555555544443
No 471
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=93.39 E-value=0.14 Score=48.61 Aligned_cols=41 Identities=17% Similarity=0.252 Sum_probs=27.4
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
+++-+.+++||.-.-++......+...+....++.-+|++|
T Consensus 485 l~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiit 525 (571)
T TIGR02203 485 LKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIA 525 (571)
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 35678999999877666666777766666654444445443
No 472
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.37 E-value=1.5 Score=38.32 Aligned_cols=53 Identities=13% Similarity=0.288 Sum_probs=31.7
Q ss_pred HHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEee
Q 022383 160 GRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (298)
Q Consensus 160 ~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT 215 (298)
..+...+....+. ...+++|||++|.|.... ...+.++++.-| +..++++|..
T Consensus 110 r~i~~~l~~~p~~-~~~kVvII~~ae~m~~~a-aNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 110 REIKRFLSRPPLE-APRKVVVIEDAETMNEAA-ANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred HHHHHHHccCccc-CCceEEEEEchhhcCHHH-HHHHHHHHhCCC-CCeEEEEECC
Confidence 3444444443332 578999999999985443 455556666655 5555555543
No 473
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.34 E-value=0.87 Score=40.45 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=27.3
Q ss_pred HHHHHHHHHhh---cCCcEEEEcCCCCchHHHHHHHHHHhhcc
Q 022383 58 AIQQRAVMPII---KGRDVIAQAQSGTGKTSMIALTVCQTVDT 97 (298)
Q Consensus 58 ~~Q~~~~~~~~---~~~~~li~~pTG~GKT~~~~~~~~~~~~~ 97 (298)
..-.++++.+. .|+..+|.||.|+|||.... -+.+.+..
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~-~la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQ-QIAAAVAA 159 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHH-HHHHHHHh
Confidence 44556777765 78999999999999996533 34444433
No 474
>PRK10436 hypothetical protein; Provisional
Probab=93.33 E-value=0.22 Score=45.69 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=29.4
Q ss_pred HHHHCCCCCChHHHHHHHHHhh--cCCcEEEEcCCCCchHHHHHHHHHHhhcc
Q 022383 47 GIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVDT 97 (298)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~--~~~~~li~~pTG~GKT~~~~~~~~~~~~~ 97 (298)
.|.++|+ .+.|.+.+..+. .+.-++++||||||||... ..++..+..
T Consensus 196 ~L~~LG~---~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~~ 244 (462)
T PRK10436 196 DLETLGM---TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLNT 244 (462)
T ss_pred CHHHcCc---CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhCC
Confidence 3445553 355666665544 3456899999999999653 345555533
No 475
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=93.32 E-value=0.64 Score=42.50 Aligned_cols=72 Identities=11% Similarity=0.149 Sum_probs=55.5
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh----cCCcEEEeChHHHHHHHhccCccCCC
Q 022383 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRA 175 (298)
Q Consensus 100 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~~~~~~~~~~~~~ 175 (298)
...++||.|++++-+..+.+.++.. ++.+..++|+.+..+....+. +..+|+|+|. +-..++++.+
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd------~~~~GiDip~ 313 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATD------VAARGIDIDD 313 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEcc------ccccCccCCC
Confidence 4458999999999999999988763 678889999887766544432 5678999994 2235788899
Q ss_pred ccEEEe
Q 022383 176 IKLLVL 181 (298)
Q Consensus 176 l~~vVi 181 (298)
+++||.
T Consensus 314 v~~VI~ 319 (434)
T PRK11192 314 VSHVIN 319 (434)
T ss_pred CCEEEE
Confidence 999884
No 476
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.31 E-value=0.21 Score=46.19 Aligned_cols=39 Identities=15% Similarity=0.341 Sum_probs=23.3
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEE
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~ 212 (298)
..+.+..||||+|++....|-..+ +.+..=|+++.+|+.
T Consensus 117 ~~ryKVyiIDEvHMLS~~afNALL-KTLEEPP~hV~FIlA 155 (515)
T COG2812 117 EGRYKVYIIDEVHMLSKQAFNALL-KTLEEPPSHVKFILA 155 (515)
T ss_pred cccceEEEEecHHhhhHHHHHHHh-cccccCccCeEEEEe
Confidence 468899999999998655544222 233333344444443
No 477
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=93.19 E-value=1 Score=44.89 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
.+.++.||+|+|||...-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 689999999999996543
No 478
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.17 E-value=1.1 Score=41.46 Aligned_cols=44 Identities=20% Similarity=0.306 Sum_probs=27.7
Q ss_pred CCccEEEechhhHhhccc------c-HHHHHHHHHhC---CCCccEEEEEeeCc
Q 022383 174 RAIKLLVLDESDEMLSRG------F-KDQIYDVYRYL---PPDLQVVLISATLP 217 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~------~-~~~i~~i~~~~---~~~~~~v~~SAT~~ 217 (298)
+....|.|||+|.+.... | ...+..++--+ .++--+|++.||--
T Consensus 395 ~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNf 448 (752)
T KOG0734|consen 395 RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNF 448 (752)
T ss_pred cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCC
Confidence 355788999999986542 1 12233343333 35667999999953
No 479
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=93.17 E-value=0.13 Score=49.29 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=38.7
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
+++++.||||+|||..+++|-+-... ..+||+=|--|+...+....++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~-----gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFK-----GSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCC-----CCEEEEeCCchHHHHHHHHHHhC
Confidence 58999999999999999998766532 25777778888888877666554
No 480
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=93.13 E-value=1 Score=37.58 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=21.1
Q ss_pred HHhhcCC-cEEEEcCCCCchHHHHHHHHHHhh
Q 022383 65 MPIIKGR-DVIAQAQSGTGKTSMIALTVCQTV 95 (298)
Q Consensus 65 ~~~~~~~-~~li~~pTG~GKT~~~~~~~~~~~ 95 (298)
+.+.+|+ -+.++|+-|||||..-- .+...+
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~ 75 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRR-ALLASL 75 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHH-HHHHhc
Confidence 3455666 78899999999997655 344433
No 481
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=93.10 E-value=0.68 Score=42.17 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=55.7
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
..++||.|+++..+..+.+.+... ++++..++|+....++...+ .+.++|+|+|. +-..++++.++
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd------v~~rGiDip~v 324 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD------VAARGLHIPAV 324 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec------hhhcCCCcccc
Confidence 458999999999999998887654 67889999987766554333 25689999995 22357888899
Q ss_pred cEEEechh
Q 022383 177 KLLVLDES 184 (298)
Q Consensus 177 ~~vViDE~ 184 (298)
++||.-+.
T Consensus 325 ~~VI~~d~ 332 (423)
T PRK04837 325 THVFNYDL 332 (423)
T ss_pred CEEEEeCC
Confidence 98875543
No 482
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.09 E-value=0.25 Score=47.06 Aligned_cols=32 Identities=13% Similarity=0.219 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHhhc------CCcEEEEcCCCCchHHHH
Q 022383 56 PSAIQQRAVMPIIK------GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~------~~~~li~~pTG~GKT~~~ 87 (298)
+.++-.+.+....+ .|-.+++||.|.|||..+
T Consensus 306 ~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 306 KGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLA 343 (877)
T ss_pred cccchhhhhhcccCccCCCccceEEeecCCCCChhHHH
Confidence 44555666666552 267999999999999543
No 483
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.08 E-value=0.11 Score=44.04 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=20.7
Q ss_pred HHHHhhcCCcEEEEcCCCCchHHHHH
Q 022383 63 AVMPIIKGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 63 ~~~~~~~~~~~li~~pTG~GKT~~~~ 88 (298)
+...+..|+++++.||+|+|||..+.
T Consensus 14 ~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 14 ALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 34445678999999999999997654
No 484
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.05 E-value=1.8 Score=38.52 Aligned_cols=18 Identities=22% Similarity=0.359 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
+.+++.||.|+|||....
T Consensus 40 ~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR 57 (367)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 368899999999996544
No 485
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=92.99 E-value=0.38 Score=35.35 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=31.8
Q ss_pred chHHHHHHHHhhCC--CCcEEEEecchhhHHHHHHHHhhh
Q 022383 258 WKFDTLCDLYDTLT--ITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 258 ~k~~~l~~ll~~~~--~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
.|...+..++.... .+++||||++...++.+++.|.+.
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~ 51 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKP 51 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhc
Confidence 47788888887653 679999999999999999999753
No 486
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=92.94 E-value=0.2 Score=51.47 Aligned_cols=57 Identities=25% Similarity=0.280 Sum_probs=45.8
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHhhccC--CCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTS--SREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~--~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
-.+++++|.|..|||||.+..--++..+... -.-.+.++++-|++-+.++..++..-
T Consensus 14 ~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~ 72 (1139)
T COG1074 14 PPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDR 72 (1139)
T ss_pred CCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHH
Confidence 3568999999999999988777777777663 23448999999999999988887653
No 487
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.83 E-value=1.1 Score=41.00 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=54.4
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHH
Q 022383 43 DLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (298)
Q Consensus 43 ~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 122 (298)
.+++.+++ ++-.+...|..+.-..-.|+. -+.|-.|||||...++-+-. +...+...+++|-+-|+.|+.++.+...
T Consensus 151 a~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~-lh~knPd~~I~~Tfftk~L~s~~r~lv~ 227 (660)
T COG3972 151 ALLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE-LHSKNPDSRIAFTFFTKILASTMRTLVP 227 (660)
T ss_pred HHHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHH-HhcCCCCceEEEEeehHHHHHHHHHHHH
Confidence 34444444 344566678777655666766 77899999999765443322 3333344589999999999999998887
Q ss_pred Hhh
Q 022383 123 AIG 125 (298)
Q Consensus 123 ~~~ 125 (298)
++.
T Consensus 228 ~F~ 230 (660)
T COG3972 228 EFF 230 (660)
T ss_pred HHH
Confidence 764
No 488
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=92.79 E-value=0.36 Score=46.21 Aligned_cols=53 Identities=17% Similarity=0.328 Sum_probs=37.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH--HHHHHHHHHHHHhhc
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR--ELATQTEKVILAIGD 126 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~--~l~~q~~~~~~~~~~ 126 (298)
++++|.|+||+|||..+...+.+.+.. +..++++=|-. +|...+...++..+.
T Consensus 177 ~H~lv~G~TGsGKT~l~~~l~~q~i~~---g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 177 GHTLVLGTTGVGKTRLAELLITQDIRR---GDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 689999999999998775555555543 33566666754 477777777776643
No 489
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=92.72 E-value=0.2 Score=40.50 Aligned_cols=38 Identities=16% Similarity=0.391 Sum_probs=22.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHH
Q 022383 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (298)
Q Consensus 73 ~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (298)
++++||||||||... ..++..+... .+.+++.+-...+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~-~~~~i~t~e~~~E 41 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKN-KTHHILTIEDPIE 41 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhc-CCcEEEEEcCCcc
Confidence 689999999999653 3344444332 2235555554333
No 490
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=92.69 E-value=0.9 Score=41.85 Aligned_cols=73 Identities=23% Similarity=0.252 Sum_probs=54.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh----cCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
..++||.|+++.-+..+.+.+.+. ++.+..++|+.+..+....+. +..+|+|||. .+ ...+++..+
T Consensus 245 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~-~rGiDip~v 314 (456)
T PRK10590 245 WQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IA-ARGLDIEEL 314 (456)
T ss_pred CCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HH-hcCCCcccC
Confidence 457999999999999999888654 678889999887665543332 4678999994 22 246888899
Q ss_pred cEEEech
Q 022383 177 KLLVLDE 183 (298)
Q Consensus 177 ~~vViDE 183 (298)
++||.=+
T Consensus 315 ~~VI~~~ 321 (456)
T PRK10590 315 PHVVNYE 321 (456)
T ss_pred CEEEEeC
Confidence 8887443
No 491
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.68 E-value=2.9 Score=35.94 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=29.9
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeC
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATL 216 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~ 216 (298)
...+++|||++|.|.... ...+.++++.-|.+..++++|...
T Consensus 94 ~~~kv~ii~~ad~mt~~A-aNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDA-ISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHhhcCCCCeEEEEEeCCh
Confidence 567899999999986443 566666777766666666666553
No 492
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=92.65 E-value=2.9 Score=33.47 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=36.5
Q ss_pred ccEEEechhhHhhcccc-HHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhc
Q 022383 176 IKLLVLDESDEMLSRGF-KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF 227 (298)
Q Consensus 176 l~~vViDE~h~~~~~~~-~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~ 227 (298)
=+++||--.|....-++ ...+.+=.+..+++.+++++|+.=...+..++.+.
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i 196 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFI 196 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHH
Confidence 46677777776544443 24455556667789999999999888888877654
No 493
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=92.62 E-value=0.26 Score=43.59 Aligned_cols=43 Identities=9% Similarity=0.255 Sum_probs=26.8
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTREL 113 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l 113 (298)
.+..++++||||||||... ..++..+... .+.+++.+-...+.
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~-~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKN-AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcC-CCCEEEEEcCChhh
Confidence 4678999999999999653 3344444322 23356666554443
No 494
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=92.58 E-value=0.18 Score=47.94 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=25.8
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEee
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT 215 (298)
++.+.+++||+-.-.+......+.+.++...++.-++++|--
T Consensus 493 ~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~ 534 (576)
T TIGR02204 493 KDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHR 534 (576)
T ss_pred hCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 577889999987655665555565555555444445554433
No 495
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.57 E-value=0.095 Score=44.66 Aligned_cols=20 Identities=50% Similarity=0.747 Sum_probs=17.4
Q ss_pred hhcCCcEEEEcCCCCchHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~ 86 (298)
+..++.++++||+|+|||..
T Consensus 30 ~~~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp HHCTEEEEEESSTTSSHHHH
T ss_pred HHcCCcEEEECCCCCchhHH
Confidence 34788999999999999965
No 496
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=92.56 E-value=0.32 Score=46.06 Aligned_cols=46 Identities=24% Similarity=0.369 Sum_probs=29.7
Q ss_pred HHHHCCCCCChHHHHHHHHHhhc--CCcEEEEcCCCCchHHHHHHHHHHhhc
Q 022383 47 GIYQYGFEKPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVD 96 (298)
Q Consensus 47 ~l~~~~~~~~~~~Q~~~~~~~~~--~~~~li~~pTG~GKT~~~~~~~~~~~~ 96 (298)
.|.++|+ .+.|...+..+.. +..++++||||||||... ..++..+.
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 3556664 3556666665543 356889999999999653 34555553
No 497
>PRK05636 replicative DNA helicase; Provisional
Probab=92.51 E-value=0.8 Score=42.69 Aligned_cols=138 Identities=17% Similarity=0.195 Sum_probs=62.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE-EcCCchHHH----
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC-VGGKSVGED---- 144 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---- 144 (298)
|.=+++.|.+|+|||.-.+-.+.+.... .+..++|++ ..--..|+..++-.... ++....+ .|..+..+.
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~--~g~~v~~fS-lEMs~~ql~~R~ls~~s--~v~~~~i~~g~l~~~e~~~~~ 339 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIK--HNKASVIFS-LEMSKSEIVMRLLSAEA--EVRLSDMRGGKMDEDAWEKLV 339 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEE-eeCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHHHHH
Confidence 4556788999999995433222222212 133566663 22223344433322211 1111111 222222221
Q ss_pred --HHHhhcCCcEEEe-----ChHHHHHHHhccCccCCCccEEEechhhHhhccc----cHHHHHHHHHhCC-----CCcc
Q 022383 145 --IRKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG----FKDQIYDVYRYLP-----PDLQ 208 (298)
Q Consensus 145 --~~~~~~~~~ilV~-----Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~----~~~~i~~i~~~~~-----~~~~ 208 (298)
...+ ....+.|- |...+....+.-.. -..+++||||=.|.|.... ....+..+.+.+. -++.
T Consensus 340 ~a~~~l-~~~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAkel~ip 417 (505)
T PRK05636 340 QRLGKI-AQAPIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMSSGKRVESRQQEVSEFSRQLKLLAKELDVP 417 (505)
T ss_pred HHHHHH-hcCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcCCCCCCCcHHHHHHHHHHHHHHHHHHhCCe
Confidence 1112 23355553 33444443332111 1358999999999985321 1233333433332 2577
Q ss_pred EEEEEe
Q 022383 209 VVLISA 214 (298)
Q Consensus 209 ~v~~SA 214 (298)
++++|.
T Consensus 418 Vi~lsQ 423 (505)
T PRK05636 418 LIAISQ 423 (505)
T ss_pred EEEEee
Confidence 777764
No 498
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.50 E-value=1.3 Score=44.14 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=15.3
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
.+.++.||+|+|||....
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 489999999999996543
No 499
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.41 E-value=0.72 Score=45.92 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.4
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
.+++.||||+|||..+-
T Consensus 598 ~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 598 VFLLVGPSGVGKTETAL 614 (852)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48999999999997654
No 500
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.35 E-value=0.44 Score=38.04 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=34.4
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhcc-------CCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDT-------SSREVQALILSPTRELATQTEKVILAIGD 126 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~-------~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (298)
.|.-+++.||+|+|||...+-.+.+.... ...+.+++|+..-.. ..++.+++..+..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 56679999999999996654444443321 113457888776544 6677777777653
Done!