Query 022383
Match_columns 298
No_of_seqs 156 out of 1833
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 04:34:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.6E-46 1.2E-50 337.4 34.3 278 18-297 41-325 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 2.4E-44 8.2E-49 323.3 32.0 277 21-297 25-301 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 1.5E-43 5E-48 318.7 33.7 275 22-297 4-301 (417)
4 3eiq_A Eukaryotic initiation f 100.0 2.9E-42 1E-46 309.8 32.2 270 28-297 35-305 (414)
5 3fe2_A Probable ATP-dependent 100.0 4.4E-42 1.5E-46 287.3 26.5 219 21-239 17-240 (242)
6 1s2m_A Putative ATP-dependent 100.0 5.2E-41 1.8E-45 300.6 32.2 265 31-297 19-283 (400)
7 1fuu_A Yeast initiation factor 100.0 1E-41 3.4E-46 304.3 24.3 268 29-297 17-284 (394)
8 3fht_A ATP-dependent RNA helic 100.0 9.5E-41 3.2E-45 299.7 30.0 270 25-297 17-291 (412)
9 1xti_A Probable ATP-dependent 100.0 2.9E-40 9.9E-45 294.7 32.6 264 33-297 8-275 (391)
10 3pey_A ATP-dependent RNA helic 100.0 2E-40 6.8E-45 295.8 31.4 263 31-297 3-268 (395)
11 1wrb_A DJVLGB; RNA helicase, D 100.0 4.7E-41 1.6E-45 282.9 23.2 232 18-249 6-252 (253)
12 3iuy_A Probable ATP-dependent 100.0 1.9E-40 6.6E-45 274.9 23.8 211 24-235 10-227 (228)
13 1vec_A ATP-dependent RNA helic 100.0 6.7E-40 2.3E-44 267.4 26.5 202 33-234 3-205 (206)
14 2oxc_A Probable ATP-dependent 100.0 3.2E-40 1.1E-44 274.0 24.9 211 25-236 16-228 (230)
15 3fmo_B ATP-dependent RNA helic 100.0 2.5E-40 8.4E-45 284.7 25.0 207 28-237 87-298 (300)
16 3bor_A Human initiation factor 100.0 1.5E-40 5.2E-45 277.1 22.6 213 25-237 22-235 (237)
17 3fmp_B ATP-dependent RNA helic 100.0 1.1E-40 3.6E-45 305.5 23.5 265 30-297 89-358 (479)
18 3ber_A Probable ATP-dependent 100.0 3.5E-40 1.2E-44 276.7 24.7 208 29-236 39-247 (249)
19 1qde_A EIF4A, translation init 100.0 5.2E-40 1.8E-44 271.5 24.6 212 26-238 7-218 (224)
20 1q0u_A Bstdead; DEAD protein, 100.0 2E-40 7E-45 273.1 21.6 206 32-237 3-212 (219)
21 1hv8_A Putative ATP-dependent 100.0 1.9E-38 6.4E-43 280.3 32.3 258 32-297 5-263 (367)
22 2pl3_A Probable ATP-dependent 100.0 1.3E-38 4.5E-43 265.2 25.9 208 29-237 21-233 (236)
23 2gxq_A Heat resistant RNA depe 100.0 1.9E-38 6.4E-43 259.0 25.2 201 34-236 2-205 (207)
24 1t6n_A Probable ATP-dependent 100.0 2.1E-38 7.1E-43 261.2 25.2 205 31-235 12-219 (220)
25 3ly5_A ATP-dependent RNA helic 100.0 3.1E-38 1.1E-42 266.8 23.3 201 32-232 51-258 (262)
26 3sqw_A ATP-dependent RNA helic 100.0 9.4E-38 3.2E-42 292.1 28.0 267 29-295 13-311 (579)
27 3dkp_A Probable ATP-dependent 100.0 3.5E-38 1.2E-42 264.1 21.6 219 21-239 13-243 (245)
28 2z0m_A 337AA long hypothetical 100.0 2.6E-36 8.8E-41 263.7 29.5 241 40-293 1-241 (337)
29 3i5x_A ATP-dependent RNA helic 100.0 1.1E-36 3.8E-41 284.1 28.2 263 33-295 68-362 (563)
30 3fho_A ATP-dependent RNA helic 100.0 7.2E-38 2.5E-42 288.3 19.4 265 29-297 115-382 (508)
31 2v1x_A ATP-dependent DNA helic 100.0 8.1E-35 2.8E-39 271.1 24.3 254 33-297 21-292 (591)
32 3oiy_A Reverse gyrase helicase 100.0 2.2E-35 7.6E-40 265.4 18.6 239 43-297 9-277 (414)
33 1oyw_A RECQ helicase, ATP-depe 100.0 3.7E-34 1.3E-38 263.9 22.5 248 33-297 2-261 (523)
34 2zj8_A DNA helicase, putative 100.0 1.8E-33 6.2E-38 269.3 19.2 248 34-295 2-260 (720)
35 2va8_A SSO2462, SKI2-type heli 100.0 2.1E-32 7.1E-37 261.9 26.0 248 33-295 8-275 (715)
36 3l9o_A ATP-dependent RNA helic 100.0 4.5E-33 1.5E-37 274.7 21.7 249 32-296 161-465 (1108)
37 2p6r_A Afuhel308 helicase; pro 100.0 2.4E-33 8.3E-38 267.7 14.8 247 34-295 2-265 (702)
38 4ddu_A Reverse gyrase; topoiso 100.0 2.7E-32 9.3E-37 269.0 21.6 238 44-297 67-334 (1104)
39 1gku_B Reverse gyrase, TOP-RG; 100.0 1.2E-32 4E-37 271.5 11.7 232 46-295 48-298 (1054)
40 2xgj_A ATP-dependent RNA helic 100.0 3.5E-30 1.2E-34 252.1 25.0 232 48-296 80-367 (1010)
41 2ykg_A Probable ATP-dependent 100.0 9.2E-31 3.2E-35 249.9 20.5 174 44-217 2-184 (696)
42 3tbk_A RIG-I helicase domain; 100.0 1.7E-29 5.7E-34 234.8 26.0 164 55-218 4-176 (555)
43 4a2p_A RIG-I, retinoic acid in 100.0 7.3E-30 2.5E-34 237.4 23.6 166 52-217 4-177 (556)
44 4f92_B U5 small nuclear ribonu 100.0 4E-30 1.4E-34 261.9 19.9 249 40-295 66-340 (1724)
45 4a2q_A RIG-I, retinoic acid in 100.0 2.5E-29 8.5E-34 243.0 23.8 168 50-217 243-418 (797)
46 4f92_B U5 small nuclear ribonu 100.0 5.5E-29 1.9E-33 253.6 26.2 249 40-294 911-1177(1724)
47 4a4z_A Antiviral helicase SKI2 100.0 8E-30 2.7E-34 249.5 19.2 157 50-219 35-191 (997)
48 1wp9_A ATP-dependent RNA helic 100.0 1.6E-27 5.3E-32 217.5 25.8 160 55-218 9-168 (494)
49 4a2w_A RIG-I, retinoic acid in 100.0 3.6E-28 1.2E-32 237.7 22.5 168 50-217 243-418 (936)
50 1tf5_A Preprotein translocase 100.0 8.6E-28 3E-32 225.8 24.1 161 50-218 79-288 (844)
51 2fsf_A Preprotein translocase 100.0 6.4E-28 2.2E-32 226.1 17.9 147 51-205 71-240 (853)
52 2eyq_A TRCF, transcription-rep 99.9 6.2E-26 2.1E-30 225.1 26.4 239 38-296 586-836 (1151)
53 1nkt_A Preprotein translocase 99.9 6E-26 2.1E-30 213.2 24.8 161 50-218 107-316 (922)
54 4gl2_A Interferon-induced heli 99.9 1.2E-27 4.1E-32 228.5 9.6 163 55-218 7-193 (699)
55 1gm5_A RECG; helicase, replica 99.9 3.2E-26 1.1E-30 218.1 17.4 233 42-294 356-608 (780)
56 3b6e_A Interferon-induced heli 99.9 1.3E-26 4.4E-31 189.7 12.1 164 51-215 29-216 (216)
57 2oca_A DAR protein, ATP-depend 99.9 1.4E-26 4.9E-31 213.4 10.5 154 55-220 113-266 (510)
58 2jlq_A Serine protease subunit 99.9 7E-26 2.4E-30 205.3 7.6 211 52-297 1-213 (451)
59 2fwr_A DNA repair protein RAD2 99.9 9.2E-25 3.1E-29 199.4 14.8 136 55-217 93-229 (472)
60 3o8b_A HCV NS3 protease/helica 99.9 1.4E-25 4.9E-30 208.6 9.1 202 56-297 218-421 (666)
61 2whx_A Serine protease/ntpase/ 99.9 2.4E-26 8.3E-31 214.8 3.9 225 38-297 155-380 (618)
62 2xau_A PRE-mRNA-splicing facto 99.9 1.6E-23 5.6E-28 200.4 22.8 248 30-294 69-325 (773)
63 3llm_A ATP-dependent RNA helic 99.9 9.5E-24 3.3E-28 175.2 15.7 169 52-231 58-231 (235)
64 1rif_A DAR protein, DNA helica 99.9 4.2E-24 1.5E-28 182.1 10.4 154 55-220 113-266 (282)
65 3h1t_A Type I site-specific re 99.9 1.7E-23 5.8E-28 196.1 13.7 151 55-219 178-344 (590)
66 1yks_A Genome polyprotein [con 99.9 2E-25 6.9E-30 201.5 0.4 190 66-297 4-202 (440)
67 2v6i_A RNA helicase; membrane, 99.9 3.1E-23 1.1E-27 186.8 14.0 195 69-297 1-196 (431)
68 2wv9_A Flavivirin protease NS2 99.9 1.3E-24 4.6E-29 204.4 3.1 216 47-297 202-435 (673)
69 2z83_A Helicase/nucleoside tri 99.9 8.9E-23 3E-27 185.3 12.4 196 64-297 15-215 (459)
70 2ipc_A Preprotein translocase 99.9 1.2E-20 4E-25 177.2 25.8 130 51-188 76-215 (997)
71 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 9.7E-22 3.3E-26 191.9 13.6 153 55-218 271-440 (1038)
72 2fz4_A DNA repair protein RAD2 99.8 1.8E-20 6.3E-25 155.4 15.4 138 55-219 93-231 (237)
73 3rc3_A ATP-dependent RNA helic 99.8 1E-19 3.4E-24 171.0 11.2 195 65-297 150-345 (677)
74 1z63_A Helicase of the SNF2/RA 99.8 1.7E-18 5.8E-23 159.0 18.4 149 54-217 36-188 (500)
75 3dmq_A RNA polymerase-associat 99.8 1.3E-18 4.3E-23 170.7 13.0 159 54-217 152-317 (968)
76 3crv_A XPD/RAD3 related DNA he 99.7 3.8E-17 1.3E-21 151.5 13.3 129 55-189 3-187 (551)
77 3mwy_W Chromo domain-containin 99.7 3E-16 1E-20 151.5 18.3 154 55-216 236-405 (800)
78 3jux_A Protein translocase sub 99.7 4.7E-15 1.6E-19 137.2 24.6 235 51-297 72-499 (822)
79 1z3i_X Similar to RAD54-like; 99.7 9E-15 3.1E-19 137.9 23.5 155 55-216 55-230 (644)
80 2vl7_A XPD; helicase, unknown 99.6 8.4E-16 2.9E-20 142.1 8.8 127 51-188 4-188 (540)
81 4a15_A XPD helicase, ATP-depen 99.4 5.6E-13 1.9E-17 124.8 11.1 81 55-137 3-87 (620)
82 1c4o_A DNA nucleotide excision 99.1 2.3E-09 7.9E-14 101.2 16.6 68 52-126 6-78 (664)
83 1w36_D RECD, exodeoxyribonucle 99.1 3.2E-10 1.1E-14 106.0 9.9 160 43-215 136-298 (608)
84 2d7d_A Uvrabc system protein B 98.9 7.5E-08 2.6E-12 90.8 18.5 66 55-126 12-82 (661)
85 2gk6_A Regulator of nonsense t 98.6 1.1E-06 3.9E-11 82.4 14.8 69 54-124 179-247 (624)
86 4b3f_X DNA-binding protein smu 98.5 3.8E-07 1.3E-11 86.0 10.4 67 55-124 189-256 (646)
87 3e1s_A Exodeoxyribonuclease V, 98.5 9.2E-07 3.2E-11 81.9 12.6 127 55-215 189-315 (574)
88 2xzl_A ATP-dependent helicase 98.5 1.7E-06 5.8E-11 83.2 14.2 69 54-124 359-427 (802)
89 3upu_A ATP-dependent DNA helic 98.4 1.4E-06 4.8E-11 78.7 11.8 136 49-214 19-163 (459)
90 2wjy_A Regulator of nonsense t 98.4 3E-06 1E-10 81.4 14.1 69 54-124 355-423 (800)
91 3lfu_A DNA helicase II; SF1 he 98.2 0.00013 4.6E-09 68.6 19.6 70 54-125 8-78 (647)
92 2p6n_A ATP-dependent RNA helic 98.0 1.8E-05 6.2E-10 62.6 7.2 71 225-297 9-79 (191)
93 2o0j_A Terminase, DNA packagin 97.8 0.00015 5.2E-09 63.5 11.0 71 55-126 163-233 (385)
94 2rb4_A ATP-dependent RNA helic 97.8 5.2E-05 1.8E-09 59.0 7.1 57 241-297 3-59 (175)
95 2hjv_A ATP-dependent RNA helic 97.7 7.1E-05 2.4E-09 57.5 7.0 56 241-297 5-60 (163)
96 1fuk_A Eukaryotic initiation f 97.7 0.00011 3.6E-09 56.6 7.3 54 244-297 2-55 (165)
97 3cpe_A Terminase, DNA packagin 97.6 0.0014 4.7E-08 61.1 14.1 73 55-128 163-235 (592)
98 2jgn_A DBX, DDX3, ATP-dependen 97.5 0.00025 8.4E-09 55.7 7.6 57 240-297 14-71 (185)
99 3vkw_A Replicase large subunit 97.5 0.00052 1.8E-08 60.9 9.4 85 71-187 162-246 (446)
100 2orw_A Thymidine kinase; TMTK, 97.4 0.00092 3.1E-08 52.4 9.2 40 69-111 2-41 (184)
101 3ec2_A DNA replication protein 97.4 0.00073 2.5E-08 52.5 8.4 19 69-87 37-55 (180)
102 1uaa_A REP helicase, protein ( 97.4 0.00032 1.1E-08 66.4 7.3 80 55-136 2-85 (673)
103 3n70_A Transport activator; si 97.2 0.002 6.7E-08 48.2 9.0 21 68-88 22-42 (145)
104 1pjr_A PCRA; DNA repair, DNA r 97.2 0.00085 2.9E-08 64.0 8.2 81 54-136 10-93 (724)
105 1xx6_A Thymidine kinase; NESG, 97.2 0.0012 4E-08 52.1 7.5 40 69-111 7-46 (191)
106 2kjq_A DNAA-related protein; s 97.2 0.00032 1.1E-08 53.0 4.0 18 69-86 35-52 (149)
107 2b8t_A Thymidine kinase; deoxy 97.2 0.00049 1.7E-08 55.6 5.3 113 69-213 11-123 (223)
108 1a5t_A Delta prime, HOLB; zinc 97.2 0.0017 5.9E-08 55.9 9.1 33 56-88 3-42 (334)
109 3h4m_A Proteasome-activating n 97.1 0.0027 9.2E-08 53.1 10.1 55 31-87 12-68 (285)
110 3te6_A Regulatory protein SIR3 97.1 0.0032 1.1E-07 53.6 10.2 41 174-217 131-174 (318)
111 2chg_A Replication factor C sm 97.1 0.0053 1.8E-07 48.7 11.2 40 174-214 101-140 (226)
112 2j9r_A Thymidine kinase; TK1, 97.1 0.0014 4.7E-08 52.3 7.1 40 70-112 28-67 (214)
113 3u4q_A ATP-dependent helicase/ 97.0 0.0013 4.5E-08 66.4 8.3 67 55-123 10-79 (1232)
114 2v1u_A Cell division control p 97.0 0.0037 1.3E-07 54.4 9.5 29 175-203 130-159 (387)
115 1d2n_A N-ethylmaleimide-sensit 96.9 0.0083 2.8E-07 49.8 10.9 18 71-88 65-82 (272)
116 1l8q_A Chromosomal replication 96.9 0.0058 2E-07 52.1 10.0 18 70-87 37-54 (324)
117 3co5_A Putative two-component 96.8 0.003 1E-07 47.1 6.8 20 67-86 24-43 (143)
118 2orv_A Thymidine kinase; TP4A 96.8 0.0042 1.4E-07 50.1 7.7 40 69-111 18-57 (234)
119 2z4s_A Chromosomal replication 96.7 0.0072 2.5E-07 54.1 9.7 41 175-215 194-236 (440)
120 2qby_B CDC6 homolog 3, cell di 96.7 0.0041 1.4E-07 54.2 7.8 37 178-215 136-173 (384)
121 4b4t_M 26S protease regulatory 96.7 0.013 4.4E-07 52.0 10.8 54 30-86 175-231 (434)
122 3u61_B DNA polymerase accessor 96.6 0.015 5.1E-07 49.5 10.7 41 174-214 104-144 (324)
123 3bos_A Putative DNA replicatio 96.6 0.0043 1.5E-07 50.1 6.8 19 69-87 51-69 (242)
124 3eie_A Vacuolar protein sortin 96.6 0.0072 2.5E-07 51.6 8.5 51 31-87 13-68 (322)
125 1iqp_A RFCS; clamp loader, ext 96.6 0.009 3.1E-07 50.7 9.1 39 174-213 109-147 (327)
126 4b4t_J 26S protease regulatory 96.6 0.01 3.5E-07 52.1 9.3 54 31-87 143-199 (405)
127 3syl_A Protein CBBX; photosynt 96.6 0.014 4.7E-07 49.3 9.9 17 71-87 68-84 (309)
128 1sxj_E Activator 1 40 kDa subu 96.5 0.027 9.1E-07 48.5 11.7 43 174-217 133-175 (354)
129 1w4r_A Thymidine kinase; type 96.5 0.0079 2.7E-07 47.2 7.2 39 69-110 19-57 (195)
130 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.0055 1.9E-07 52.4 6.9 51 31-87 7-62 (322)
131 1fnn_A CDC6P, cell division co 96.5 0.005 1.7E-07 53.7 6.8 16 72-87 46-61 (389)
132 2zpa_A Uncharacterized protein 96.5 0.013 4.5E-07 54.7 9.7 113 55-217 175-289 (671)
133 1g5t_A COB(I)alamin adenosyltr 96.4 0.075 2.6E-06 41.6 12.6 141 70-225 28-172 (196)
134 3cf0_A Transitional endoplasmi 96.4 0.0086 2.9E-07 50.6 7.5 56 31-87 10-66 (301)
135 2gno_A DNA polymerase III, gam 96.4 0.028 9.7E-07 47.5 10.7 39 174-213 81-119 (305)
136 3kl4_A SRP54, signal recogniti 96.3 0.016 5.5E-07 51.4 9.2 129 71-225 98-232 (433)
137 2p65_A Hypothetical protein PF 96.3 0.02 6.8E-07 44.0 8.6 18 70-87 43-60 (187)
138 4b4t_K 26S protease regulatory 96.3 0.043 1.5E-06 48.6 11.5 55 30-87 166-223 (428)
139 3e2i_A Thymidine kinase; Zn-bi 96.3 0.0059 2E-07 48.7 5.4 40 69-111 27-66 (219)
140 2w58_A DNAI, primosome compone 96.2 0.038 1.3E-06 43.4 10.1 17 71-87 55-71 (202)
141 1sxj_C Activator 1 40 kDa subu 96.2 0.026 9E-07 48.4 9.8 39 174-213 109-147 (340)
142 3pfi_A Holliday junction ATP-d 96.2 0.042 1.4E-06 46.9 11.1 17 71-87 56-72 (338)
143 1njg_A DNA polymerase III subu 96.2 0.093 3.2E-06 41.8 12.5 39 174-213 125-163 (250)
144 2qby_A CDC6 homolog 1, cell di 96.2 0.0095 3.2E-07 51.7 6.8 18 70-87 45-62 (386)
145 1sxj_D Activator 1 41 kDa subu 96.1 0.017 5.9E-07 49.6 8.3 40 174-214 132-171 (353)
146 4b4t_H 26S protease regulatory 96.1 0.052 1.8E-06 48.4 10.9 56 30-87 203-260 (467)
147 4b4t_L 26S protease subunit RP 96.0 0.014 4.7E-07 51.9 7.1 55 30-87 175-232 (437)
148 3hu3_A Transitional endoplasmi 95.9 0.038 1.3E-06 50.0 9.7 43 176-218 298-350 (489)
149 2qz4_A Paraplegin; AAA+, SPG7, 95.9 0.048 1.6E-06 44.6 9.6 52 33-87 3-56 (262)
150 3b9p_A CG5977-PA, isoform A; A 95.9 0.041 1.4E-06 46.1 9.2 54 31-87 16-71 (297)
151 4b4t_I 26S protease regulatory 95.8 0.048 1.6E-06 48.2 9.6 55 30-87 176-233 (437)
152 2qgz_A Helicase loader, putati 95.6 0.0086 2.9E-07 50.8 3.9 18 70-87 152-169 (308)
153 3dm5_A SRP54, signal recogniti 95.5 0.17 5.8E-06 45.0 11.9 58 71-134 101-160 (443)
154 2zan_A Vacuolar protein sortin 95.4 0.032 1.1E-06 49.8 7.3 54 31-87 129-184 (444)
155 1sxj_B Activator 1 37 kDa subu 95.4 0.053 1.8E-06 45.7 8.4 39 175-214 107-145 (323)
156 2rb4_A ATP-dependent RNA helic 95.3 0.13 4.4E-06 39.4 9.6 73 101-183 34-110 (175)
157 2qp9_X Vacuolar protein sortin 95.3 0.081 2.8E-06 45.7 9.1 51 31-87 46-101 (355)
158 2hjv_A ATP-dependent RNA helic 95.2 0.56 1.9E-05 35.2 12.7 74 101-184 35-112 (163)
159 1jr3_A DNA polymerase III subu 95.1 0.16 5.3E-06 43.8 10.6 39 174-213 118-156 (373)
160 3vfd_A Spastin; ATPase, microt 95.1 0.11 3.9E-06 45.3 9.6 18 70-87 148-165 (389)
161 2chq_A Replication factor C sm 95.1 0.033 1.1E-06 46.9 5.9 41 34-87 15-55 (319)
162 3d8b_A Fidgetin-like protein 1 95.0 0.14 4.7E-06 44.3 9.7 19 70-88 117-135 (357)
163 1fuk_A Eukaryotic initiation f 95.0 0.18 6.1E-06 38.1 9.3 74 101-184 30-107 (165)
164 2w0m_A SSO2452; RECA, SSPF, un 95.0 0.16 5.5E-06 40.4 9.5 52 68-123 21-72 (235)
165 2r6a_A DNAB helicase, replicat 94.9 0.097 3.3E-06 46.9 8.9 142 67-214 200-362 (454)
166 3cmu_A Protein RECA, recombina 94.9 0.035 1.2E-06 58.0 6.5 41 69-112 1426-1466(2050)
167 1w5s_A Origin recognition comp 94.9 0.11 3.6E-06 45.6 8.9 18 70-87 50-69 (412)
168 3eaq_A Heat resistant RNA depe 94.8 0.15 5.2E-06 40.4 8.8 71 101-181 31-105 (212)
169 1hqc_A RUVB; extended AAA-ATPa 94.7 0.033 1.1E-06 47.2 5.0 18 70-87 38-55 (324)
170 2q6t_A DNAB replication FORK h 94.7 0.086 3E-06 47.0 7.8 115 69-189 199-324 (444)
171 2p6n_A ATP-dependent RNA helic 94.6 0.28 9.4E-06 38.2 9.7 72 102-183 55-130 (191)
172 3i5x_A ATP-dependent RNA helic 94.5 0.55 1.9E-05 43.0 12.9 111 82-203 320-434 (563)
173 3pvs_A Replication-associated 94.4 0.07 2.4E-06 47.7 6.6 18 71-88 51-68 (447)
174 1t5i_A C_terminal domain of A 94.4 0.18 6E-06 38.6 8.0 74 101-184 31-108 (172)
175 4a1f_A DNAB helicase, replicat 94.4 0.07 2.4E-06 45.8 6.2 51 67-121 43-93 (338)
176 1sxj_A Activator 1 95 kDa subu 94.3 0.095 3.3E-06 47.7 7.2 41 174-216 147-189 (516)
177 3bh0_A DNAB-like replicative h 94.1 0.19 6.4E-06 42.6 8.4 53 67-123 65-117 (315)
178 1cr0_A DNA primase/helicase; R 93.9 0.49 1.7E-05 39.4 10.5 22 67-88 32-53 (296)
179 3sqw_A ATP-dependent RNA helic 93.9 0.83 2.8E-05 42.1 12.9 88 90-184 277-368 (579)
180 3cf2_A TER ATPase, transitiona 93.8 0.16 5.3E-06 48.8 7.9 54 31-87 472-528 (806)
181 2jgn_A DBX, DDX3, ATP-dependen 93.8 0.23 8E-06 38.4 7.7 90 80-183 29-122 (185)
182 1n0w_A DNA repair protein RAD5 93.8 0.31 1.1E-05 39.1 8.7 42 68-109 22-66 (243)
183 2i4i_A ATP-dependent RNA helic 93.7 0.48 1.6E-05 41.3 10.5 73 100-182 275-351 (417)
184 2ehv_A Hypothetical protein PH 93.6 0.16 5.3E-06 41.1 6.7 22 67-88 27-48 (251)
185 3cf2_A TER ATPase, transitiona 93.5 1.4 4.9E-05 42.2 13.8 16 71-86 239-254 (806)
186 1xp8_A RECA protein, recombina 93.5 0.19 6.4E-06 43.6 7.2 40 69-111 73-112 (366)
187 3hr8_A Protein RECA; alpha and 93.4 0.11 3.7E-06 44.9 5.5 41 69-112 60-100 (356)
188 3pey_A ATP-dependent RNA helic 93.3 2.7 9.3E-05 35.9 14.7 76 100-185 242-321 (395)
189 2z43_A DNA repair and recombin 93.2 0.67 2.3E-05 39.3 10.2 55 70-124 107-165 (324)
190 3io5_A Recombination and repai 93.2 0.11 3.9E-06 43.9 5.2 90 72-188 30-124 (333)
191 3m6a_A ATP-dependent protease 93.0 0.14 4.7E-06 47.0 5.9 19 69-87 107-125 (543)
192 2ce7_A Cell division protein F 92.9 0.4 1.4E-05 43.1 8.7 52 31-87 11-66 (476)
193 3bgw_A DNAB-like replicative h 92.6 0.19 6.6E-06 44.8 6.3 51 67-121 194-244 (444)
194 3i32_A Heat resistant RNA depe 92.5 0.42 1.4E-05 40.2 7.8 73 101-183 28-104 (300)
195 2v1x_A ATP-dependent DNA helic 92.4 1.3 4.5E-05 41.0 11.7 74 100-183 266-343 (591)
196 2zr9_A Protein RECA, recombina 92.3 0.14 4.9E-06 44.0 4.9 39 69-110 60-98 (349)
197 3pxi_A Negative regulator of g 91.8 0.63 2.1E-05 44.5 9.0 17 72-88 523-539 (758)
198 1u94_A RECA protein, recombina 91.8 0.14 4.9E-06 44.2 4.2 39 69-110 62-100 (356)
199 2d7d_A Uvrabc system protein B 91.7 5.7 0.0002 37.2 15.3 91 101-201 445-540 (661)
200 2db3_A ATP-dependent RNA helic 91.5 1.2 4.2E-05 39.3 10.2 70 103-182 302-375 (434)
201 1ypw_A Transitional endoplasmi 91.4 0.78 2.7E-05 44.2 9.3 19 69-87 237-255 (806)
202 1s2m_A Putative ATP-dependent 91.4 0.96 3.3E-05 39.1 9.3 73 101-183 258-334 (400)
203 3fht_A ATP-dependent RNA helic 91.3 0.79 2.7E-05 39.7 8.6 73 101-183 266-342 (412)
204 2fna_A Conserved hypothetical 91.2 6 0.0002 33.2 15.6 37 176-213 138-177 (357)
205 1qvr_A CLPB protein; coiled co 91.1 0.44 1.5E-05 46.3 7.2 18 70-87 191-208 (854)
206 1xti_A Probable ATP-dependent 91.0 3.5 0.00012 35.3 12.5 74 101-184 250-327 (391)
207 3hjh_A Transcription-repair-co 91.0 1.7 5.9E-05 39.1 10.5 52 69-126 13-64 (483)
208 2dr3_A UPF0273 protein PH0284; 90.8 0.23 7.9E-06 39.9 4.4 52 68-123 21-72 (247)
209 3u4q_B ATP-dependent helicase/ 90.7 0.36 1.2E-05 48.5 6.5 40 73-112 4-43 (1166)
210 3cmw_A Protein RECA, recombina 90.7 0.26 9E-06 51.0 5.4 90 70-189 1431-1523(1706)
211 2j0s_A ATP-dependent RNA helic 90.6 1.1 3.8E-05 38.9 8.9 72 102-183 277-352 (410)
212 3hws_A ATP-dependent CLP prote 90.5 0.42 1.4E-05 41.2 6.0 20 69-88 50-69 (363)
213 4akg_A Glutathione S-transfera 90.4 0.59 2E-05 50.7 7.9 74 40-116 890-969 (2695)
214 1c4o_A DNA nucleotide excision 90.4 9.1 0.00031 35.9 15.3 77 101-187 439-519 (664)
215 2oap_1 GSPE-2, type II secreti 90.4 0.88 3E-05 41.3 8.2 40 45-86 236-276 (511)
216 1oyw_A RECQ helicase, ATP-depe 90.3 1.2 4E-05 40.6 9.0 73 101-183 236-312 (523)
217 1ls1_A Signal recognition part 90.3 2.8 9.5E-05 34.9 10.7 19 70-88 98-116 (295)
218 2eyq_A TRCF, transcription-rep 90.1 1.7 5.8E-05 43.6 10.6 78 101-186 812-893 (1151)
219 2l8b_A Protein TRAI, DNA helic 90.0 0.64 2.2E-05 35.8 5.8 62 56-119 35-98 (189)
220 1e9r_A Conjugal transfer prote 90.0 0.3 1E-05 43.3 4.6 43 69-114 52-94 (437)
221 2x8a_A Nuclear valosin-contain 89.9 0.067 2.3E-06 44.4 0.3 54 31-87 5-61 (274)
222 1hv8_A Putative ATP-dependent 89.8 1.2 4.1E-05 37.8 8.3 73 101-183 238-314 (367)
223 3b85_A Phosphate starvation-in 89.8 0.45 1.5E-05 37.6 5.1 32 56-87 8-39 (208)
224 3e70_C DPA, signal recognition 89.6 2.6 9E-05 35.7 10.1 52 176-227 212-264 (328)
225 3cmu_A Protein RECA, recombina 89.6 0.49 1.7E-05 49.8 6.3 48 67-118 1078-1125(2050)
226 3vkg_A Dynein heavy chain, cyt 89.5 0.92 3.2E-05 49.9 8.5 77 40-118 873-954 (3245)
227 4f4c_A Multidrug resistance pr 89.4 0.23 7.9E-06 50.5 3.9 40 174-213 1234-1273(1321)
228 2bjv_A PSP operon transcriptio 89.3 0.91 3.1E-05 37.0 6.8 19 69-87 28-46 (265)
229 1jbk_A CLPB protein; beta barr 89.1 0.32 1.1E-05 37.0 3.7 18 70-87 43-60 (195)
230 1p9r_A General secretion pathw 89.1 0.73 2.5E-05 40.7 6.4 27 60-86 155-183 (418)
231 1w36_B RECB, exodeoxyribonucle 89.0 0.78 2.7E-05 46.2 7.2 54 71-124 17-79 (1180)
232 1wp9_A ATP-dependent RNA helic 88.7 1.9 6.7E-05 37.9 9.1 96 79-185 340-447 (494)
233 2yjt_D ATP-dependent RNA helic 88.4 0.083 2.8E-06 40.3 0.0 74 101-184 30-107 (170)
234 3nbx_X ATPase RAVA; AAA+ ATPas 88.6 0.66 2.3E-05 42.0 5.9 44 43-87 15-58 (500)
235 1kgd_A CASK, peripheral plasma 88.5 0.34 1.1E-05 37.2 3.4 19 69-87 4-22 (180)
236 2oca_A DAR protein, ATP-depend 88.4 4 0.00014 36.6 11.1 74 103-185 349-426 (510)
237 1ofh_A ATP-dependent HSL prote 88.2 1.2 4E-05 37.0 7.0 18 70-87 50-67 (310)
238 4ag6_A VIRB4 ATPase, type IV s 88.2 0.55 1.9E-05 40.9 5.0 44 174-217 261-308 (392)
239 3uk6_A RUVB-like 2; hexameric 88.0 0.52 1.8E-05 40.5 4.7 19 70-88 70-88 (368)
240 2eyu_A Twitching motility prot 87.9 0.28 9.5E-06 40.4 2.8 20 67-86 22-41 (261)
241 1ex7_A Guanylate kinase; subst 87.9 0.23 7.8E-06 38.6 2.1 16 71-86 2-17 (186)
242 2gza_A Type IV secretion syste 87.8 0.36 1.2E-05 41.7 3.5 20 67-86 172-191 (361)
243 1ixz_A ATP-dependent metallopr 87.6 0.19 6.4E-06 40.9 1.5 54 31-87 11-66 (254)
244 1ojl_A Transcriptional regulat 87.5 0.94 3.2E-05 38.0 5.9 19 69-87 24-42 (304)
245 1yks_A Genome polyprotein [con 87.4 1.2 4.1E-05 39.5 6.8 68 101-180 177-245 (440)
246 1z5z_A Helicase of the SNF2/RA 87.3 0.7 2.4E-05 38.1 4.9 41 257-297 95-138 (271)
247 3tau_A Guanylate kinase, GMP k 87.1 0.44 1.5E-05 37.5 3.4 19 69-87 7-25 (208)
248 2r44_A Uncharacterized protein 87.1 0.33 1.1E-05 41.2 2.8 26 62-87 38-63 (331)
249 2qor_A Guanylate kinase; phosp 86.9 0.32 1.1E-05 38.1 2.5 22 66-87 8-29 (204)
250 3vaa_A Shikimate kinase, SK; s 86.8 0.48 1.6E-05 36.9 3.4 21 68-88 23-43 (199)
251 1lvg_A Guanylate kinase, GMP k 86.8 0.46 1.6E-05 37.1 3.3 19 69-87 3-21 (198)
252 2qmh_A HPR kinase/phosphorylas 86.7 0.39 1.3E-05 37.7 2.8 19 69-87 33-51 (205)
253 2i1q_A DNA repair and recombin 86.6 0.86 2.9E-05 38.5 5.2 55 70-124 98-166 (322)
254 3a8t_A Adenylate isopentenyltr 86.3 0.39 1.3E-05 41.0 2.8 19 70-88 40-58 (339)
255 2pt7_A CAG-ALFA; ATPase, prote 86.2 0.35 1.2E-05 41.2 2.5 19 67-85 168-186 (330)
256 1u0j_A DNA replication protein 86.1 1.6 5.6E-05 35.8 6.4 45 42-88 73-122 (267)
257 2ius_A DNA translocase FTSK; n 86.0 1.1 3.7E-05 40.6 5.6 24 69-92 166-189 (512)
258 2zts_A Putative uncharacterize 85.9 0.46 1.6E-05 38.2 3.0 52 69-123 29-80 (251)
259 3trf_A Shikimate kinase, SK; a 85.7 0.43 1.5E-05 36.5 2.6 19 70-88 5-23 (185)
260 2c9o_A RUVB-like 1; hexameric 85.6 0.9 3.1E-05 40.5 5.0 20 69-88 62-81 (456)
261 3iij_A Coilin-interacting nucl 85.5 0.38 1.3E-05 36.7 2.1 21 68-88 9-29 (180)
262 2r62_A Cell division protease 85.2 0.14 4.6E-06 42.1 -0.6 18 70-87 44-61 (268)
263 1iy2_A ATP-dependent metallopr 85.2 0.3 1E-05 40.4 1.5 54 31-87 35-90 (278)
264 3ney_A 55 kDa erythrocyte memb 85.1 0.66 2.3E-05 36.3 3.4 18 69-86 18-35 (197)
265 1zp6_A Hypothetical protein AT 85.1 0.31 1.1E-05 37.5 1.6 20 67-86 6-25 (191)
266 1qhx_A CPT, protein (chloramph 85.1 0.5 1.7E-05 35.8 2.7 18 70-87 3-20 (178)
267 2cvh_A DNA repair and recombin 85.0 0.6 2E-05 36.7 3.2 35 69-109 19-53 (220)
268 3tr0_A Guanylate kinase, GMP k 84.9 0.67 2.3E-05 36.0 3.4 19 69-87 6-24 (205)
269 1z6g_A Guanylate kinase; struc 84.7 0.7 2.4E-05 36.7 3.5 21 67-87 20-40 (218)
270 3exa_A TRNA delta(2)-isopenten 84.7 0.58 2E-05 39.5 3.1 18 71-88 4-21 (322)
271 2px0_A Flagellar biosynthesis 84.7 0.65 2.2E-05 38.9 3.4 19 70-88 105-123 (296)
272 1tue_A Replication protein E1; 84.7 1.5 5.2E-05 34.5 5.3 45 41-87 27-75 (212)
273 2j41_A Guanylate kinase; GMP, 84.6 0.63 2.2E-05 36.2 3.1 20 68-87 4-23 (207)
274 1lv7_A FTSH; alpha/beta domain 84.5 0.48 1.6E-05 38.5 2.5 53 32-87 8-62 (257)
275 3eiq_A Eukaryotic initiation f 84.4 1 3.4E-05 39.2 4.7 73 101-183 280-356 (414)
276 3foz_A TRNA delta(2)-isopenten 84.4 0.61 2.1E-05 39.3 3.1 17 72-88 12-28 (316)
277 2ewv_A Twitching motility prot 84.3 0.49 1.7E-05 41.1 2.6 20 67-86 133-152 (372)
278 3a00_A Guanylate kinase, GMP k 84.3 0.73 2.5E-05 35.4 3.3 17 71-87 2-18 (186)
279 3lw7_A Adenylate kinase relate 84.1 0.52 1.8E-05 35.4 2.4 17 72-88 3-19 (179)
280 4f4c_A Multidrug resistance pr 83.9 0.84 2.9E-05 46.5 4.4 39 173-211 570-608 (1321)
281 4gp7_A Metallophosphoesterase; 83.8 0.5 1.7E-05 35.9 2.2 20 69-88 8-27 (171)
282 1kag_A SKI, shikimate kinase I 83.8 0.63 2.2E-05 35.0 2.7 18 70-87 4-21 (173)
283 3tbk_A RIG-I helicase domain; 83.8 2.7 9.2E-05 37.9 7.4 96 81-183 370-478 (555)
284 1y63_A LMAJ004144AAA protein; 83.7 0.6 2.1E-05 35.8 2.6 20 69-88 9-28 (184)
285 1s96_A Guanylate kinase, GMP k 83.7 0.62 2.1E-05 37.1 2.7 22 66-87 12-33 (219)
286 1um8_A ATP-dependent CLP prote 83.5 2.4 8.3E-05 36.5 6.7 19 70-88 72-90 (376)
287 1v5w_A DMC1, meiotic recombina 83.2 1.7 5.8E-05 37.1 5.5 54 71-124 123-180 (343)
288 1znw_A Guanylate kinase, GMP k 83.2 0.86 2.9E-05 35.7 3.4 22 66-87 16-37 (207)
289 4eun_A Thermoresistant glucoki 83.1 0.68 2.3E-05 36.0 2.7 19 69-87 28-46 (200)
290 3jvv_A Twitching mobility prot 83.0 0.66 2.2E-05 40.0 2.8 19 68-86 121-139 (356)
291 2ze6_A Isopentenyl transferase 83.0 0.76 2.6E-05 37.4 3.1 17 72-88 3-19 (253)
292 2v6i_A RNA helicase; membrane, 83.0 2.2 7.4E-05 37.7 6.3 68 101-179 171-238 (431)
293 1nij_A Hypothetical protein YJ 82.7 0.86 2.9E-05 38.5 3.4 37 175-214 151-187 (318)
294 3t15_A Ribulose bisphosphate c 82.5 0.57 2E-05 39.1 2.2 17 71-87 37-53 (293)
295 2wv9_A Flavivirin protease NS2 82.2 3 0.0001 39.2 7.2 68 101-180 410-478 (673)
296 3nwn_A Kinesin-like protein KI 81.9 1.1 3.7E-05 38.6 3.7 23 65-87 98-122 (359)
297 1knq_A Gluconate kinase; ALFA/ 81.7 0.65 2.2E-05 35.1 2.1 19 69-87 7-25 (175)
298 2z0m_A 337AA long hypothetical 81.5 3.4 0.00012 34.4 6.8 71 100-184 219-293 (337)
299 3b5x_A Lipid A export ATP-bind 81.5 0.63 2.2E-05 43.0 2.3 39 174-212 497-535 (582)
300 2iut_A DNA translocase FTSK; n 81.4 2.1 7.3E-05 39.2 5.6 41 70-110 214-255 (574)
301 1bg2_A Kinesin; motor protein, 81.3 1.3 4.4E-05 37.6 4.0 24 64-87 70-95 (325)
302 2jlq_A Serine protease subunit 81.2 3.7 0.00013 36.4 7.2 67 102-180 189-256 (451)
303 1ly1_A Polynucleotide kinase; 81.2 0.77 2.6E-05 34.7 2.4 16 72-87 4-19 (181)
304 3crm_A TRNA delta(2)-isopenten 81.2 0.95 3.2E-05 38.4 3.1 18 71-88 6-23 (323)
305 3kb2_A SPBC2 prophage-derived 81.1 0.76 2.6E-05 34.4 2.3 17 72-88 3-19 (173)
306 1kht_A Adenylate kinase; phosp 81.0 0.86 3E-05 34.8 2.6 18 70-87 3-20 (192)
307 4fcw_A Chaperone protein CLPB; 81.0 0.71 2.4E-05 38.5 2.3 18 71-88 48-65 (311)
308 4gl2_A Interferon-induced heli 81.0 1.9 6.5E-05 40.5 5.4 105 101-215 400-518 (699)
309 1sky_E F1-ATPase, F1-ATP synth 80.9 13 0.00045 33.1 10.4 23 66-88 147-169 (473)
310 3dc4_A Kinesin-like protein NO 80.5 1.2 4.3E-05 38.0 3.6 23 65-87 88-112 (344)
311 1nlf_A Regulatory protein REPA 80.4 2.6 8.9E-05 34.6 5.5 24 66-89 26-49 (279)
312 3t0q_A AGR253WP; kinesin, alph 80.2 1.5 5E-05 37.7 3.9 26 63-88 77-104 (349)
313 4etp_A Kinesin-like protein KA 80.1 1.4 4.8E-05 38.6 3.8 26 63-88 132-159 (403)
314 3p32_A Probable GTPase RV1496/ 80.0 27 0.00091 29.7 11.9 17 71-87 80-96 (355)
315 2whx_A Serine protease/ntpase/ 79.9 6.4 0.00022 36.6 8.5 68 101-180 355-423 (618)
316 2h58_A Kinesin-like protein KI 79.9 1.6 5.3E-05 37.2 4.0 25 63-87 72-98 (330)
317 1f9v_A Kinesin-like protein KA 79.8 1.5 5.2E-05 37.6 3.9 26 63-88 76-103 (347)
318 2y65_A Kinesin, kinesin heavy 79.8 1.5 5.3E-05 37.8 4.0 23 65-87 78-102 (365)
319 4a14_A Kinesin, kinesin-like p 79.8 1.6 5.3E-05 37.4 4.0 23 65-87 77-101 (344)
320 1v8k_A Kinesin-like protein KI 79.8 1.4 4.9E-05 38.6 3.8 24 64-87 147-172 (410)
321 2vvg_A Kinesin-2; motor protei 79.7 1.6 5.3E-05 37.5 4.0 23 65-87 83-107 (350)
322 1goj_A Kinesin, kinesin heavy 79.6 1.5 5.1E-05 37.7 3.8 22 66-87 75-98 (355)
323 3b6u_A Kinesin-like protein KI 79.4 1.5 5.1E-05 38.0 3.7 23 65-87 95-119 (372)
324 2xau_A PRE-mRNA-splicing facto 79.4 6.9 0.00024 37.4 8.7 75 101-181 303-393 (773)
325 3d3q_A TRNA delta(2)-isopenten 79.4 1.2 3.9E-05 38.1 3.0 16 72-87 9-24 (340)
326 3lre_A Kinesin-like protein KI 79.3 1.6 5.4E-05 37.6 3.9 23 65-87 99-123 (355)
327 3cm0_A Adenylate kinase; ATP-b 79.3 0.74 2.5E-05 35.1 1.7 20 69-88 3-22 (186)
328 3k1j_A LON protease, ATP-depen 79.3 3.4 0.00011 38.3 6.4 25 63-87 53-77 (604)
329 3uie_A Adenylyl-sulfate kinase 79.3 1.2 4E-05 34.7 2.8 20 68-87 23-42 (200)
330 2zfi_A Kinesin-like protein KI 79.2 1.6 5.6E-05 37.6 4.0 24 64-87 82-107 (366)
331 3gbj_A KIF13B protein; kinesin 79.2 1.6 5.3E-05 37.6 3.8 24 64-87 85-110 (354)
332 1t5c_A CENP-E protein, centrom 79.1 1.6 5.3E-05 37.5 3.7 24 64-87 70-95 (349)
333 2r2a_A Uncharacterized protein 79.0 1.5 5.1E-05 34.3 3.4 22 72-93 7-28 (199)
334 3lnc_A Guanylate kinase, GMP k 79.0 0.93 3.2E-05 36.1 2.2 21 67-87 24-44 (231)
335 2bdt_A BH3686; alpha-beta prot 79.0 0.73 2.5E-05 35.4 1.5 18 71-88 3-20 (189)
336 2nr8_A Kinesin-like protein KI 78.8 1.6 5.4E-05 37.6 3.7 24 64-87 96-121 (358)
337 1x88_A Kinesin-like protein KI 78.8 1.5 5.3E-05 37.7 3.7 24 64-87 81-106 (359)
338 2heh_A KIF2C protein; kinesin, 78.2 1.8 6.1E-05 37.6 3.9 24 64-87 127-152 (387)
339 3u06_A Protein claret segregat 78.2 1.6 5.5E-05 38.3 3.6 25 63-87 130-156 (412)
340 1g8p_A Magnesium-chelatase 38 78.2 0.67 2.3E-05 39.4 1.2 19 69-87 44-62 (350)
341 2r8r_A Sensor protein; KDPD, P 78.2 2.4 8.1E-05 33.9 4.3 24 72-95 8-31 (228)
342 3cob_A Kinesin heavy chain-lik 78.1 1.5 5E-05 38.0 3.3 25 63-87 71-97 (369)
343 3eph_A TRNA isopentenyltransfe 77.9 1.2 4.2E-05 38.9 2.8 17 72-88 4-20 (409)
344 2ykg_A Probable ATP-dependent 77.9 4 0.00014 38.3 6.6 79 100-184 397-488 (696)
345 2wbe_C Bipolar kinesin KRP-130 77.8 1.7 5.7E-05 37.7 3.6 22 66-87 95-118 (373)
346 3t61_A Gluconokinase; PSI-biol 77.8 1.1 3.8E-05 34.8 2.3 18 71-88 19-36 (202)
347 3tif_A Uncharacterized ABC tra 77.8 1.1 3.6E-05 36.2 2.2 17 69-85 30-46 (235)
348 2rhm_A Putative kinase; P-loop 77.6 0.98 3.4E-05 34.6 1.9 18 70-87 5-22 (193)
349 3c8u_A Fructokinase; YP_612366 77.5 1.1 3.6E-05 35.2 2.1 18 69-86 21-38 (208)
350 3bfn_A Kinesin-like protein KI 77.5 1.6 5.5E-05 38.0 3.4 32 56-87 75-116 (388)
351 1in4_A RUVB, holliday junction 77.4 1.5 5.2E-05 37.2 3.2 17 71-87 52-68 (334)
352 3nwj_A ATSK2; P loop, shikimat 77.3 1.9 6.4E-05 35.1 3.6 20 69-88 47-66 (250)
353 1np6_A Molybdopterin-guanine d 77.3 3.6 0.00012 31.3 5.0 16 71-86 7-22 (174)
354 1c9k_A COBU, adenosylcobinamid 77.2 2.2 7.6E-05 32.7 3.8 42 73-121 2-43 (180)
355 1ye8_A Protein THEP1, hypothet 76.9 1.8 6E-05 33.2 3.2 15 72-86 2-16 (178)
356 3tqc_A Pantothenate kinase; bi 76.8 5 0.00017 33.9 6.2 16 72-87 94-109 (321)
357 1zuh_A Shikimate kinase; alpha 76.8 1.8 6.1E-05 32.4 3.2 18 71-88 8-25 (168)
358 2v54_A DTMP kinase, thymidylat 76.8 1.4 4.9E-05 34.0 2.7 19 69-87 3-21 (204)
359 3pxg_A Negative regulator of g 76.8 1.7 5.8E-05 38.9 3.5 19 70-88 201-219 (468)
360 1gvn_B Zeta; postsegregational 76.8 1.2 4E-05 37.1 2.3 17 71-87 34-50 (287)
361 4a74_A DNA repair and recombin 76.7 1.1 3.8E-05 35.3 2.1 22 67-88 22-43 (231)
362 2cdn_A Adenylate kinase; phosp 76.7 1.1 3.9E-05 34.7 2.1 18 71-88 21-38 (201)
363 2owm_A Nckin3-434, related to 76.7 2.1 7.2E-05 38.0 4.0 22 66-87 131-154 (443)
364 2c95_A Adenylate kinase 1; tra 76.7 1.3 4.5E-05 33.9 2.4 21 68-88 7-27 (196)
365 1f2t_A RAD50 ABC-ATPase; DNA d 76.6 1.4 4.7E-05 32.7 2.4 15 72-86 25-39 (149)
366 2i3b_A HCR-ntpase, human cance 76.5 2 6.9E-05 33.2 3.4 42 173-217 103-146 (189)
367 1via_A Shikimate kinase; struc 76.4 1.5 5E-05 33.1 2.6 18 71-88 5-22 (175)
368 2v9p_A Replication protein E1; 76.4 1.6 5.6E-05 36.6 3.0 19 68-86 124-142 (305)
369 2pez_A Bifunctional 3'-phospho 76.2 1.3 4.4E-05 33.6 2.2 19 69-87 4-22 (179)
370 1vma_A Cell division protein F 76.0 2.6 9E-05 35.3 4.3 18 71-88 105-122 (306)
371 2rep_A Kinesin-like protein KI 75.8 2 6.8E-05 37.2 3.5 25 63-87 107-133 (376)
372 2cbz_A Multidrug resistance-as 75.7 1.3 4.4E-05 35.7 2.2 19 68-86 29-47 (237)
373 1m7g_A Adenylylsulfate kinase; 75.7 1.8 6E-05 33.9 2.9 30 57-87 13-42 (211)
374 3asz_A Uridine kinase; cytidin 75.7 1.2 4E-05 34.8 1.9 19 69-87 5-23 (211)
375 4akg_A Glutathione S-transfera 75.6 5.6 0.00019 43.5 7.4 21 67-87 1264-1284(2695)
376 1xjc_A MOBB protein homolog; s 75.3 3.4 0.00012 31.3 4.3 15 72-86 6-20 (169)
377 3qf7_A RAD50; ABC-ATPase, ATPa 75.2 1.4 4.7E-05 38.1 2.4 16 72-87 25-40 (365)
378 2qt1_A Nicotinamide riboside k 75.1 1.1 3.8E-05 34.9 1.6 23 65-87 16-38 (207)
379 1sgw_A Putative ABC transporte 75.1 1.5 5E-05 34.8 2.3 19 68-86 33-51 (214)
380 3o8b_A HCV NS3 protease/helica 75.0 4.5 0.00015 37.9 5.9 66 101-180 396-461 (666)
381 2pcj_A ABC transporter, lipopr 74.9 1.1 3.9E-05 35.7 1.6 18 69-86 29-46 (224)
382 1e6c_A Shikimate kinase; phosp 74.9 1.7 5.8E-05 32.5 2.6 18 71-88 3-20 (173)
383 3vkg_A Dynein heavy chain, cyt 74.9 5.1 0.00017 44.3 6.9 24 63-86 1296-1320(3245)
384 1tev_A UMP-CMP kinase; ploop, 74.9 1.5 5.2E-05 33.4 2.4 19 70-88 3-21 (196)
385 1ry6_A Internal kinesin; kines 74.8 2.4 8.1E-05 36.5 3.7 19 69-87 82-102 (360)
386 3kta_A Chromosome segregation 74.7 1.4 4.9E-05 33.4 2.1 16 72-87 28-43 (182)
387 3dmq_A RNA polymerase-associat 74.6 16 0.00055 35.9 10.0 90 100-202 502-597 (968)
388 1aky_A Adenylate kinase; ATP:A 74.6 1.8 6E-05 34.1 2.7 19 70-88 4-22 (220)
389 2iyv_A Shikimate kinase, SK; t 74.6 1.8 6.2E-05 32.9 2.7 18 71-88 3-20 (184)
390 1zd8_A GTP:AMP phosphotransfer 74.5 1.6 5.3E-05 34.7 2.4 19 69-87 6-24 (227)
391 3fb4_A Adenylate kinase; psych 74.5 1.5 5.2E-05 34.3 2.3 17 72-88 2-18 (216)
392 1htw_A HI0065; nucleotide-bind 74.4 1.2 4E-05 33.5 1.5 19 68-86 31-49 (158)
393 3rc3_A ATP-dependent RNA helic 74.3 12 0.00042 35.0 8.7 72 104-186 323-400 (677)
394 2yvu_A Probable adenylyl-sulfa 74.3 1.5 5.2E-05 33.4 2.2 20 69-88 12-31 (186)
395 3gfo_A Cobalt import ATP-bindi 74.2 1.4 4.9E-05 36.3 2.1 19 68-86 32-50 (275)
396 1g41_A Heat shock protein HSLU 74.0 1.7 5.7E-05 38.6 2.6 18 70-87 50-67 (444)
397 1cke_A CK, MSSA, protein (cyti 74.0 1.6 5.5E-05 34.4 2.4 18 71-88 6-23 (227)
398 1g6h_A High-affinity branched- 73.9 1.3 4.5E-05 36.1 1.8 19 68-86 31-49 (257)
399 2pze_A Cystic fibrosis transme 73.8 1.5 5.3E-05 35.0 2.2 19 68-86 32-50 (229)
400 1nks_A Adenylate kinase; therm 73.7 1.6 5.3E-05 33.3 2.1 16 72-87 3-18 (194)
401 2ff7_A Alpha-hemolysin translo 73.7 1.5 5.2E-05 35.5 2.1 19 68-86 33-51 (247)
402 1zak_A Adenylate kinase; ATP:A 73.6 1.8 6.1E-05 34.1 2.5 19 70-88 5-23 (222)
403 1rj9_A FTSY, signal recognitio 73.6 2.3 7.8E-05 35.7 3.3 18 70-87 102-119 (304)
404 1zu4_A FTSY; GTPase, signal re 73.5 3.2 0.00011 35.0 4.2 18 71-88 106-123 (320)
405 3b9q_A Chloroplast SRP recepto 73.4 2 7E-05 35.9 2.9 18 70-87 100-117 (302)
406 2ghi_A Transport protein; mult 73.3 1.6 5.5E-05 35.7 2.2 19 68-86 44-62 (260)
407 2bwj_A Adenylate kinase 5; pho 73.2 1.7 5.9E-05 33.3 2.3 19 69-87 11-29 (199)
408 3dl0_A Adenylate kinase; phosp 73.2 1.7 5.9E-05 34.0 2.3 17 72-88 2-18 (216)
409 2j37_W Signal recognition part 73.2 19 0.00063 32.5 9.3 35 72-109 103-137 (504)
410 2plr_A DTMP kinase, probable t 73.1 1.7 5.7E-05 33.8 2.2 19 70-88 4-22 (213)
411 4g1u_C Hemin import ATP-bindin 73.1 1.6 5.5E-05 35.8 2.2 19 68-86 35-53 (266)
412 1qf9_A UMP/CMP kinase, protein 72.4 1.7 5.9E-05 33.1 2.1 18 71-88 7-24 (194)
413 1b0u_A Histidine permease; ABC 72.4 1.8 6.1E-05 35.5 2.2 30 174-203 170-199 (262)
414 2wwf_A Thymidilate kinase, put 72.3 1.9 6.6E-05 33.5 2.4 20 69-88 9-28 (212)
415 2olj_A Amino acid ABC transpor 72.3 1.6 5.4E-05 35.8 1.9 31 173-203 175-205 (263)
416 1nn5_A Similar to deoxythymidy 72.2 2 6.8E-05 33.5 2.4 20 69-88 8-27 (215)
417 1jjv_A Dephospho-COA kinase; P 72.1 1.9 6.5E-05 33.5 2.3 17 72-88 4-20 (206)
418 4a2w_A RIG-I, retinoic acid in 72.0 12 0.0004 36.7 8.3 98 80-184 611-721 (936)
419 1ji0_A ABC transporter; ATP bi 72.0 1.8 6E-05 34.9 2.1 30 174-203 156-185 (240)
420 3fho_A ATP-dependent RNA helic 71.9 1.1 3.9E-05 40.4 1.1 73 101-183 357-433 (508)
421 1ukz_A Uridylate kinase; trans 71.9 1.9 6.6E-05 33.3 2.3 17 71-87 16-32 (203)
422 3f9v_A Minichromosome maintena 71.9 2.2 7.5E-05 39.5 3.0 15 72-86 329-343 (595)
423 1pzn_A RAD51, DNA repair and r 71.9 2.7 9.1E-05 36.0 3.3 19 70-88 131-149 (349)
424 2bbw_A Adenylate kinase 4, AK4 71.8 2.2 7.6E-05 34.3 2.7 18 70-87 27-44 (246)
425 1mv5_A LMRA, multidrug resista 71.8 1.5 5.2E-05 35.4 1.7 19 68-86 26-44 (243)
426 4e22_A Cytidylate kinase; P-lo 71.8 2.8 9.6E-05 33.9 3.3 19 69-87 26-44 (252)
427 2vli_A Antibiotic resistance p 71.7 1.7 5.7E-05 32.9 1.8 19 70-88 5-23 (183)
428 2jaq_A Deoxyguanosine kinase; 71.6 2 6.9E-05 33.0 2.4 16 72-87 2-17 (205)
429 3ice_A Transcription terminati 71.5 7.1 0.00024 34.1 5.8 32 56-87 157-191 (422)
430 2pt5_A Shikimate kinase, SK; a 71.4 2.1 7.3E-05 31.8 2.4 17 72-88 2-18 (168)
431 2if2_A Dephospho-COA kinase; a 71.3 1.9 6.5E-05 33.4 2.1 16 72-87 3-18 (204)
432 2ihy_A ABC transporter, ATP-bi 71.3 1.7 5.7E-05 36.0 1.9 18 69-86 46-63 (279)
433 1vpl_A ABC transporter, ATP-bi 71.2 2 6.7E-05 35.1 2.2 32 173-204 162-193 (256)
434 2qi9_C Vitamin B12 import ATP- 71.1 1.9 6.6E-05 35.0 2.2 27 178-204 154-180 (249)
435 3nh6_A ATP-binding cassette SU 71.1 1.4 4.7E-05 37.1 1.3 19 68-86 78-96 (306)
436 3tqf_A HPR(Ser) kinase; transf 71.0 2.4 8.3E-05 32.4 2.5 20 69-88 15-34 (181)
437 2zu0_C Probable ATP-dependent 70.9 2.6 8.8E-05 34.6 2.9 39 174-212 181-219 (267)
438 1z5z_A Helicase of the SNF2/RA 70.9 28 0.00097 28.3 9.3 96 78-185 92-193 (271)
439 3pxi_A Negative regulator of g 70.9 2.7 9.3E-05 40.0 3.5 19 70-88 201-219 (758)
440 3a4m_A L-seryl-tRNA(SEC) kinas 70.8 2.1 7.2E-05 34.8 2.4 17 71-87 5-21 (260)
441 2nq2_C Hypothetical ABC transp 70.8 1.9 6.6E-05 35.0 2.1 31 174-204 145-175 (253)
442 2yz2_A Putative ABC transporte 70.5 2 6.9E-05 35.2 2.2 30 174-203 155-184 (266)
443 3fmp_B ATP-dependent RNA helic 70.5 0.88 3E-05 40.7 0.0 70 101-180 333-406 (479)
444 2ixe_A Antigen peptide transpo 70.4 2 6.9E-05 35.3 2.2 33 173-205 172-204 (271)
445 1ak2_A Adenylate kinase isoenz 70.3 3.3 0.00011 32.9 3.4 20 69-88 15-34 (233)
446 2d2e_A SUFC protein; ABC-ATPas 70.3 2.6 9E-05 34.1 2.8 31 174-204 160-190 (250)
447 3lda_A DNA repair protein RAD5 70.1 3.5 0.00012 36.0 3.7 28 27-54 78-105 (400)
448 2z0h_A DTMP kinase, thymidylat 69.9 2.3 7.8E-05 32.5 2.3 16 73-88 3-18 (197)
449 2z83_A Helicase/nucleoside tri 69.8 5.1 0.00017 35.6 4.8 68 101-180 190-258 (459)
450 2pbr_A DTMP kinase, thymidylat 69.7 2.3 7.9E-05 32.4 2.3 16 72-87 2-17 (195)
451 3auy_A DNA double-strand break 69.7 2 6.9E-05 37.0 2.1 15 73-87 28-42 (371)
452 3tlx_A Adenylate kinase 2; str 69.5 3.8 0.00013 32.9 3.6 20 69-88 28-47 (243)
453 3be4_A Adenylate kinase; malar 69.1 2.5 8.6E-05 33.2 2.4 19 70-88 5-23 (217)
454 3qks_A DNA double-strand break 69.1 2.5 8.5E-05 33.0 2.4 17 71-87 24-40 (203)
455 4a2p_A RIG-I, retinoic acid in 68.4 6.3 0.00022 35.5 5.3 98 80-184 370-480 (556)
456 2p5t_B PEZT; postsegregational 68.2 1.7 5.7E-05 35.3 1.2 17 71-87 33-49 (253)
457 2xb4_A Adenylate kinase; ATP-b 68.2 2.6 9E-05 33.3 2.4 17 72-88 2-18 (223)
458 3h1t_A Type I site-specific re 68.0 20 0.00069 32.7 8.6 79 100-184 438-526 (590)
459 3umf_A Adenylate kinase; rossm 68.0 3.4 0.00011 32.8 2.9 20 69-88 28-47 (217)
460 1e4v_A Adenylate kinase; trans 68.0 2.4 8.2E-05 33.2 2.1 17 72-88 2-18 (214)
461 1ypw_A Transitional endoplasmi 67.9 0.95 3.3E-05 43.6 -0.4 54 31-87 472-528 (806)
462 2og2_A Putative signal recogni 67.8 3.1 0.00011 35.8 2.8 18 70-87 157-174 (359)
463 2va8_A SSO2462, SKI2-type heli 67.7 21 0.00073 33.5 8.9 75 101-181 252-362 (715)
464 2f1r_A Molybdopterin-guanine d 67.7 1.8 6.1E-05 32.9 1.2 16 72-87 4-19 (171)
465 2bbs_A Cystic fibrosis transme 67.4 2.3 8E-05 35.4 2.0 18 69-86 63-80 (290)
466 2v3c_C SRP54, signal recogniti 67.0 4.5 0.00016 35.7 3.8 35 71-108 100-134 (432)
467 1vht_A Dephospho-COA kinase; s 66.9 2.9 9.9E-05 32.7 2.4 18 71-88 5-22 (218)
468 2jtq_A Phage shock protein E; 66.7 6.1 0.00021 25.6 3.6 28 271-298 40-67 (85)
469 2dhr_A FTSH; AAA+ protein, hex 66.7 2.7 9.1E-05 38.0 2.3 52 31-87 26-81 (499)
470 1rz3_A Hypothetical protein rb 66.6 2.5 8.6E-05 32.8 1.9 18 70-87 22-39 (201)
471 3sr0_A Adenylate kinase; phosp 66.2 4 0.00014 32.0 3.0 17 72-88 2-18 (206)
472 1fuu_A Yeast initiation factor 65.9 1.3 4.3E-05 38.2 0.0 72 101-182 259-334 (394)
473 1q57_A DNA primase/helicase; d 65.9 3.9 0.00013 36.8 3.3 52 67-121 239-290 (503)
474 2qen_A Walker-type ATPase; unk 65.7 4.5 0.00015 33.9 3.5 18 69-86 30-47 (350)
475 4dzz_A Plasmid partitioning pr 65.6 14 0.00049 28.1 6.2 30 76-108 8-37 (206)
476 1uf9_A TT1252 protein; P-loop, 65.5 3.9 0.00013 31.4 2.8 17 72-88 10-26 (203)
477 3mm4_A Histidine kinase homolo 65.4 43 0.0015 25.5 9.5 122 68-216 18-161 (206)
478 3qkt_A DNA double-strand break 65.4 3.1 0.00011 35.4 2.4 16 72-87 25-40 (339)
479 2vhj_A Ntpase P4, P4; non- hyd 65.2 3.2 0.00011 35.2 2.4 22 67-88 120-141 (331)
480 4anj_A Unconventional myosin-V 65.1 7 0.00024 38.6 5.0 56 34-89 99-163 (1052)
481 2jeo_A Uridine-cytidine kinase 65.1 3.5 0.00012 33.1 2.6 19 69-87 24-42 (245)
482 3oaa_A ATP synthase subunit al 65.1 79 0.0027 28.4 12.5 59 62-123 151-214 (513)
483 2grj_A Dephospho-COA kinase; T 64.8 3.4 0.00012 32.0 2.3 17 72-88 14-30 (192)
484 1svm_A Large T antigen; AAA+ f 64.6 4.3 0.00015 35.2 3.1 18 69-86 168-185 (377)
485 1r6b_X CLPA protein; AAA+, N-t 64.5 3.3 0.00011 39.4 2.7 18 70-87 207-224 (758)
486 1odf_A YGR205W, hypothetical 3 64.5 3.3 0.00011 34.4 2.4 16 72-87 33-48 (290)
487 1ltq_A Polynucleotide kinase; 64.3 3.3 0.00011 34.2 2.4 17 72-88 4-20 (301)
488 3sop_A Neuronal-specific septi 64.2 3 0.0001 34.3 2.0 15 72-86 4-18 (270)
489 2r9v_A ATP synthase subunit al 63.8 83 0.0029 28.3 12.3 34 61-94 163-199 (515)
490 1r6b_X CLPA protein; AAA+, N-t 63.6 3.1 0.00011 39.6 2.3 17 72-88 490-506 (758)
491 4a2q_A RIG-I, retinoic acid in 63.4 9.8 0.00033 36.4 5.7 98 80-184 611-721 (797)
492 1j8m_F SRP54, signal recogniti 63.3 5.9 0.0002 33.0 3.7 17 72-88 100-116 (297)
493 2vp4_A Deoxynucleoside kinase; 63.3 3.4 0.00012 32.8 2.2 18 69-86 19-36 (230)
494 4fn4_A Short chain dehydrogena 63.2 56 0.0019 26.3 9.5 81 68-160 5-93 (254)
495 2pjz_A Hypothetical protein ST 63.2 3.9 0.00013 33.4 2.5 32 174-205 145-176 (263)
496 2qe7_A ATP synthase subunit al 63.1 85 0.0029 28.1 12.6 35 61-95 150-187 (502)
497 2zj8_A DNA helicase, putative 63.1 21 0.0007 33.7 7.8 74 101-180 237-343 (720)
498 1qvr_A CLPB protein; coiled co 62.7 3.7 0.00013 39.8 2.6 17 72-88 590-606 (854)
499 1ko7_A HPR kinase/phosphatase; 62.6 17 0.00057 30.6 6.3 49 40-88 92-162 (314)
500 3aez_A Pantothenate kinase; tr 62.6 4.6 0.00016 33.9 2.9 19 69-87 89-107 (312)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.6e-46 Score=337.43 Aligned_cols=278 Identities=26% Similarity=0.388 Sum_probs=251.4
Q ss_pred CCcceeecccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhcc
Q 022383 18 DDKMVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT 97 (298)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~ 97 (298)
+.+..+.....+.++.+|+++++++.+.++|+++||..|+|+|.++++.+++|+|+++++|||+|||++|++|++..+..
T Consensus 41 ~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~ 120 (434)
T 2db3_A 41 NIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLE 120 (434)
T ss_dssp GSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHh
Confidence 33455667777889999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred C-----CCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCcc
Q 022383 98 S-----SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLR 172 (298)
Q Consensus 98 ~-----~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~ 172 (298)
. ..++++||++||++|+.|+.+.+++++...++++..++|+.....+...+..+++|+|+||++|..++......
T Consensus 121 ~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 200 (434)
T 2db3_A 121 DPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFIT 200 (434)
T ss_dssp SCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCC
T ss_pred cccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcc
Confidence 3 23679999999999999999999999988888999999999988888888889999999999999999988888
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhC--CCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEE
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYL--PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFF 250 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~--~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 250 (298)
+.+++++|+||||++.+++|...+..++..+ ++..|++++|||+++.+..+...++.++..+.+........++.+.+
T Consensus 201 l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~ 280 (434)
T 2db3_A 201 FEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTI 280 (434)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEE
T ss_pred cccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEE
Confidence 9999999999999999999999999999885 57899999999999999999999999999988877777778889988
Q ss_pred EEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 251 VAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 251 ~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
..+.... |...+..++..... ++||||++++.|+.+++.|++.|+
T Consensus 281 ~~~~~~~-k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~ 325 (434)
T 2db3_A 281 YEVNKYA-KRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEF 325 (434)
T ss_dssp EECCGGG-HHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTC
T ss_pred EEeCcHH-HHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCC
Confidence 8888776 88888888887654 599999999999999999998765
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.4e-44 Score=323.33 Aligned_cols=277 Identities=73% Similarity=1.134 Sum_probs=252.9
Q ss_pred ceeecccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCC
Q 022383 21 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR 100 (298)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~ 100 (298)
...+....+++..+|+++++++.+.++|.++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.....
T Consensus 25 ~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~ 104 (410)
T 2j0s_A 25 VEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVR 104 (410)
T ss_dssp CCCCCCTTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSC
T ss_pred cccCCCCCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccC
Confidence 34455666677889999999999999999999999999999999999999999999999999999999999998876556
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEE
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vV 180 (298)
+.++||++|+++|+.|+.+.+++++...++.+..+.|+.....+...+..+++|+|+||+++..++..+.+.+.++++||
T Consensus 105 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vV 184 (410)
T 2j0s_A 105 ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV 184 (410)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEE
Confidence 77999999999999999999999998889999999999988888888888899999999999999998888889999999
Q ss_pred echhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchH
Q 022383 181 LDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKF 260 (298)
Q Consensus 181 iDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~ 260 (298)
+||+|.+.++++...+..+++.+++..|++++|||+++.+..+...++.+|..+..........++.+.+..+.....+.
T Consensus 185 iDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 264 (410)
T 2j0s_A 185 LDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKF 264 (410)
T ss_dssp EETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHH
T ss_pred EccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHH
Confidence 99999999999999999999999999999999999999988888888889988887766677788899999888888799
Q ss_pred HHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 261 DTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 261 ~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
..+..++.....+++||||++++.++.+++.|+..|+
T Consensus 265 ~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~ 301 (410)
T 2j0s_A 265 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANF 301 (410)
T ss_dssp HHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCC
Confidence 9999999887778999999999999999999988764
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-43 Score=318.69 Aligned_cols=275 Identities=29% Similarity=0.421 Sum_probs=241.3
Q ss_pred eeecccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCC--
Q 022383 22 VFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-- 99 (298)
Q Consensus 22 ~~~~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~-- 99 (298)
...+...++++.+|+++++++.+.++|.++||..|+++|.++++.+.+|+|+++++|||+|||++|++|++..+....
T Consensus 4 ~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~ 83 (417)
T 2i4i_A 4 EATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPG 83 (417)
T ss_dssp EEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCC
T ss_pred ccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhcccc
Confidence 445566678889999999999999999999999999999999999999999999999999999999999998764321
Q ss_pred ----------------CCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHH
Q 022383 100 ----------------REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVC 163 (298)
Q Consensus 100 ----------------~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~ 163 (298)
.++++||++|+++|+.|+.+.++++....++++..++|+.....+...+..+++|+|+||++|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~ 163 (417)
T 2i4i_A 84 EALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLV 163 (417)
T ss_dssp HHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHH
T ss_pred chhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHH
Confidence 2368999999999999999999999888889999999999888888888888999999999999
Q ss_pred HHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhC--CC--CccEEEEEeeCchhHHHHHHhcCCCCEEEEecCC
Q 022383 164 DMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL--PP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 239 (298)
Q Consensus 164 ~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~--~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 239 (298)
.++....+.+.++++||+||+|++.+++|...+..++... +. ..|++++|||+++.+..+...++.++..+.....
T Consensus 164 ~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 243 (417)
T 2i4i_A 164 DMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV 243 (417)
T ss_dssp HHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred HHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCC
Confidence 9999888889999999999999999999999999998853 32 6789999999999999999889999988877766
Q ss_pred ccCcCCceEEEEEecCccchHHHHHHHHhhC-CCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 240 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
......+.+.+..++... +...+..+++.. ..+++||||++++.++.+++.|+..|+
T Consensus 244 ~~~~~~i~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~ 301 (417)
T 2i4i_A 244 GSTSENITQKVVWVEESD-KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY 301 (417)
T ss_dssp --CCSSEEEEEEECCGGG-HHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred CCCccCceEEEEEeccHh-HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCC
Confidence 666777888888877766 888899998876 456999999999999999999988764
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.9e-42 Score=309.85 Aligned_cols=270 Identities=58% Similarity=0.971 Sum_probs=247.7
Q ss_pred CCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEE
Q 022383 28 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (298)
Q Consensus 28 ~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil 107 (298)
......+|+++++++.+.+.|+++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.....+.+++|+
T Consensus 35 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil 114 (414)
T 3eiq_A 35 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVL 114 (414)
T ss_dssp CCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred ccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEE
Confidence 34556799999999999999999999999999999999999999999999999999999999999998776667789999
Q ss_pred cCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhH
Q 022383 108 SPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (298)
Q Consensus 108 ~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~ 186 (298)
+|+++|+.|+.+.+++++...+..+....|+.........+. .+++|+|+||++|.+.+....+.+.++++||+||+|+
T Consensus 115 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~ 194 (414)
T 3eiq_A 115 APTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADE 194 (414)
T ss_dssp CSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHH
T ss_pred eChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHH
Confidence 999999999999999999888899999999888777666665 7789999999999999998888889999999999999
Q ss_pred hhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHH
Q 022383 187 MLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 266 (298)
Q Consensus 187 ~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 266 (298)
+.++++...+..++..++++.|++++|||+++........++.++..+...........+.+.+..+...+.+...+..+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (414)
T 3eiq_A 195 MLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDL 274 (414)
T ss_dssp HHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHH
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888777777788899999888888899999999
Q ss_pred HhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 267 YDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 267 l~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
+.....+++||||++++.++.+++.|+..++
T Consensus 275 ~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~ 305 (414)
T 3eiq_A 275 YETLTITQAVIFINTRRKVDWLTEKMHARDF 305 (414)
T ss_dssp HHSSCCSSCEEECSCHHHHHHHHHHHHTTTC
T ss_pred HHhCCCCcEEEEeCCHHHHHHHHHHHHhcCC
Confidence 9988888999999999999999999988764
No 5
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=4.4e-42 Score=287.33 Aligned_cols=219 Identities=29% Similarity=0.459 Sum_probs=202.5
Q ss_pred ceeecccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC--
Q 022383 21 MVFETTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS-- 98 (298)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~-- 98 (298)
..+.+...+++..+|+++++++.+.+++.++||..|+++|.++++.+.+|+|+++++|||+|||++|++|++..+...
T Consensus 17 i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~ 96 (242)
T 3fe2_A 17 ITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPF 96 (242)
T ss_dssp EEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCC
T ss_pred eEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccc
Confidence 345666778899999999999999999999999999999999999999999999999999999999999999987642
Q ss_pred ---CCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCC
Q 022383 99 ---SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (298)
Q Consensus 99 ---~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~ 175 (298)
..++++||++|+++|+.|+.+.++++....++++..++|+.........+..+++|+|+||+++..++......+.+
T Consensus 97 ~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 97 LERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred cccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCccc
Confidence 34678999999999999999999999888899999999999988888888888999999999999999888888999
Q ss_pred ccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCC
Q 022383 176 IKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 239 (298)
Q Consensus 176 l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 239 (298)
++++|+||+|++.+++|...+..+++.++++.|++++|||+++.+..+...++.+|..+.+...
T Consensus 177 ~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 177 TTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp CCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred ccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999887653
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=5.2e-41 Score=300.55 Aligned_cols=265 Identities=38% Similarity=0.631 Sum_probs=236.3
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCc
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (298)
...+|+++++++.+.++|.++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.....+.+++|++|+
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 45689999999999999999999999999999999999999999999999999999999999988765566789999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc
Q 022383 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (298)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~ 190 (298)
++|+.|+.+.++++....++.+....|+.........+..+++|+|+||+++...+......+.++++||+||+|++.+.
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~ 178 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR 178 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhh
Confidence 99999999999999888889999999998887777777788999999999999998887788899999999999999888
Q ss_pred ccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhC
Q 022383 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (298)
Q Consensus 191 ~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~ 270 (298)
++...+..++..+++..|++++|||++..+..+...++..|..+.... ......+.+.+..++... |...+..+++..
T Consensus 179 ~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-k~~~l~~~~~~~ 256 (400)
T 1s2m_A 179 DFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYYAFVEERQ-KLHCLNTLFSKL 256 (400)
T ss_dssp HHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEEEECCGGG-HHHHHHHHHHHS
T ss_pred chHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEEEEechhh-HHHHHHHHHhhc
Confidence 889999999999988999999999999999998888888887665443 344566777777776665 888899999888
Q ss_pred CCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 271 TITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 271 ~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
..+++||||++++.++.+++.|++.|+
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~ 283 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGY 283 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCC
Confidence 888999999999999999999988764
No 7
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1e-41 Score=304.33 Aligned_cols=268 Identities=56% Similarity=0.918 Sum_probs=191.2
Q ss_pred CccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEc
Q 022383 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (298)
Q Consensus 29 ~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (298)
.+...+|+++++++.+.++|.++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.....++++||++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 96 (394)
T 1fuu_A 17 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 96 (394)
T ss_dssp CCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEc
Confidence 34567899999999999999999999999999999999999999999999999999999999999887766677999999
Q ss_pred CcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhh
Q 022383 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 109 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~ 188 (298)
|+++|+.|+.+.++++....++++..++|+.........+. +++|+|+||+++...+......+.++++||+||+|++.
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~ 175 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEML 175 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhh
Confidence 99999999999999998888899999999888766555444 57999999999999998888888999999999999999
Q ss_pred ccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHh
Q 022383 189 SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (298)
Q Consensus 189 ~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~ 268 (298)
++++...+..++..+++..|++++|||+++........++..|..+..........++.+.+..+.....+...+..+++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 255 (394)
T 1fuu_A 176 SSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYD 255 (394)
T ss_dssp HTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------------
T ss_pred CCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHh
Confidence 99999999999999999999999999999998888888999999888776666667777777777776667888888888
Q ss_pred hCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 269 TLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 269 ~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
....+++||||++++.++.+++.|++.++
T Consensus 256 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~ 284 (394)
T 1fuu_A 256 SISVTQAVIFCNTRRKVEELTTKLRNDKF 284 (394)
T ss_dssp -----------------------------
T ss_pred cCCCCcEEEEECCHHHHHHHHHHHHHcCC
Confidence 77778999999999999999999987654
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=9.5e-41 Score=299.72 Aligned_cols=270 Identities=36% Similarity=0.594 Sum_probs=237.3
Q ss_pred cccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcC--CcEEEEcCCCCchHHHHHHHHHHhhccCCCCe
Q 022383 25 TTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREV 102 (298)
Q Consensus 25 ~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~ 102 (298)
...+.....+|+++++++.+.++|.++||..|+++|.++++.+.++ +++++++|||+|||++|++|++..+.....++
T Consensus 17 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~ 96 (412)
T 3fht_A 17 PNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP 96 (412)
T ss_dssp TTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSC
T ss_pred CCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCC
Confidence 4444556789999999999999999999999999999999999987 99999999999999999999999988777777
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhccC-CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc-cCccCCCccEEE
Q 022383 103 QALILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLV 180 (298)
Q Consensus 103 ~~lil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~-~~~~~~~l~~vV 180 (298)
++||++|+++|+.|+.+.++++.... ++.+....++...... ...+++|+|+||+++...+.. ..+.+.++++||
T Consensus 97 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iV 173 (412)
T 3fht_A 97 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 173 (412)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEE
T ss_pred CEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEE
Confidence 99999999999999999999987654 5777777776554322 134579999999999998866 567788999999
Q ss_pred echhhHhhc-cccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccch
Q 022383 181 LDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK 259 (298)
Q Consensus 181 iDE~h~~~~-~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k 259 (298)
+||+|++.+ .++...+..+.+.+++..|++++|||+++....+...++.++..+...........+.+.+..+.....+
T Consensus 174 iDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (412)
T 3fht_A 174 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEK 253 (412)
T ss_dssp EETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHH
T ss_pred EeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHH
Confidence 999999987 5788888999999999999999999999999999999999999888877777778888998888887778
Q ss_pred HHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 260 FDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 260 ~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
...+..++.....+++||||++++.|+.+++.|+..++
T Consensus 254 ~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~ 291 (412)
T 3fht_A 254 FQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGH 291 (412)
T ss_dssp HHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCC
Confidence 99999999888888999999999999999999988764
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.9e-40 Score=294.70 Aligned_cols=264 Identities=34% Similarity=0.579 Sum_probs=232.9
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHH
Q 022383 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (298)
Q Consensus 33 ~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (298)
.+|+++++++.+.++|.++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.....+.++||++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 57999999999999999999999999999999999999999999999999999999999998876666779999999999
Q ss_pred HHHHHHHHHHHhhccC-CceEEEEEcCCchHHHHHHhh-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc
Q 022383 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (298)
Q Consensus 113 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~ 190 (298)
|+.|+.+.++++.... ++++..++|+.........+. ..++|+|+||+++..++......+.++++||+||+|++.++
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~ 167 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 167 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhc
Confidence 9999999999987765 788999999988766665554 44799999999999999888888999999999999999875
Q ss_pred -ccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCc-cCcCCceEEEEEecCccchHHHHHHHHh
Q 022383 191 -GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDE-LTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (298)
Q Consensus 191 -~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~ll~ 268 (298)
++...+..+++..++..|++++|||+++........++.+|..+...... .....+.+.+..+.... +...+..+++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~l~ 246 (391)
T 1xti_A 168 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLD 246 (391)
T ss_dssp HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGG-HHHHHHHHHH
T ss_pred cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchh-HHHHHHHHHH
Confidence 78888889999998899999999999999999999999988887765443 33456777777776665 8889999999
Q ss_pred hCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 269 TLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 269 ~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
....+++||||++++.++.+++.|+..|+
T Consensus 247 ~~~~~~~lvf~~~~~~~~~l~~~L~~~~~ 275 (391)
T 1xti_A 247 VLEFNQVVIFVKSVQRCIALAQLLVEQNF 275 (391)
T ss_dssp HSCCSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred hcCCCcEEEEeCcHHHHHHHHHHHHhCCC
Confidence 88888999999999999999999988764
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2e-40 Score=295.81 Aligned_cols=263 Identities=37% Similarity=0.580 Sum_probs=235.0
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcC--CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEc
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (298)
...+|+++++++.+.++|.++||..|+++|.++++.+.++ +++++++|||+|||++|+++++..+.....++++||++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 4579999999999999999999999999999999999988 99999999999999999999999987766677999999
Q ss_pred CcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhh
Q 022383 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 109 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~ 188 (298)
|+++|+.|+.+.+++++...++.+....++..... ...+++|+|+||+++...+......+.++++||+||+|++.
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~ 158 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNML 158 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhc
Confidence 99999999999999998888888888777654322 13468999999999999998888889999999999999998
Q ss_pred c-cccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHH
Q 022383 189 S-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 267 (298)
Q Consensus 189 ~-~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll 267 (298)
+ .++...+..+.+.+++..|++++|||+++.+..+...++.++..+...........+.+.+..+.....+...+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (395)
T 3pey_A 159 DQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELY 238 (395)
T ss_dssp HSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHH
Confidence 7 578888999999999999999999999999999999999888888777666777788888888877777888999998
Q ss_pred hhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 268 DTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 268 ~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
.....+++||||++++.|+.+++.|+..|+
T Consensus 239 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~ 268 (395)
T 3pey_A 239 GLMTIGSSIIFVATKKTANVLYGKLKSEGH 268 (395)
T ss_dssp TTTTSSEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred HhccCCCEEEEeCCHHHHHHHHHHHHhcCC
Confidence 888888999999999999999999988764
No 11
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=4.7e-41 Score=282.91 Aligned_cols=232 Identities=29% Similarity=0.458 Sum_probs=196.3
Q ss_pred CCcceeecccCCc--cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhh
Q 022383 18 DDKMVFETTEGVE--AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (298)
Q Consensus 18 ~~~~~~~~~~~~~--~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~ 95 (298)
+-+..+.+...+. ++.+|+++++++.+.++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l 85 (253)
T 1wrb_A 6 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL 85 (253)
T ss_dssp CCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 3344444444444 77899999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCC---------CCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHH
Q 022383 96 DTSS---------REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI 166 (298)
Q Consensus 96 ~~~~---------~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~ 166 (298)
.... .++++||++|+++|+.|+.+.++++....++.+..++|+.....+...+..+++|+|+||+++...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 86 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp HTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred HhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 5432 3468999999999999999999999888888999999998888777788888999999999999999
Q ss_pred hccCccCCCccEEEechhhHhhccccHHHHHHHHHhC--CC--CccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccC
Q 022383 167 KRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL--PP--DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELT 242 (298)
Q Consensus 167 ~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~--~~--~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (298)
......+.+++++|+||+|++.+++|...+..+++.+ +. ..|++++|||+++.+..+...++.+|..+.+......
T Consensus 166 ~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~ 245 (253)
T 1wrb_A 166 EKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGST 245 (253)
T ss_dssp HTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----
T ss_pred HcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 9888889999999999999999999999999999854 33 6899999999999999999999999999988766665
Q ss_pred cCCceEE
Q 022383 243 LEGIKQF 249 (298)
Q Consensus 243 ~~~i~~~ 249 (298)
..+++|.
T Consensus 246 ~~~i~q~ 252 (253)
T 1wrb_A 246 SDSIKQE 252 (253)
T ss_dssp -------
T ss_pred cCCceec
Confidence 5555553
No 12
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.9e-40 Score=274.89 Aligned_cols=211 Identities=31% Similarity=0.482 Sum_probs=187.2
Q ss_pred ecccCCccccCccc-CCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC----
Q 022383 24 ETTEGVEAITSFDA-MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---- 98 (298)
Q Consensus 24 ~~~~~~~~~~~~~~-l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~---- 98 (298)
+....+++..+|++ +++++.+.++|.++||..|+++|.++++.+.+|+|+++++|||+|||++|++|++..+...
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 45556788899999 7999999999999999999999999999999999999999999999999999999877532
Q ss_pred --CCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 99 --SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 99 --~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
..++++||++|+++|+.|+.+.++++. ..++++..++|+.........+..+++|+|+||+++..++......++++
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 246789999999999999999999986 45788889999988877777888889999999999999998888889999
Q ss_pred cEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEE
Q 022383 177 KLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKIL 235 (298)
Q Consensus 177 ~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~ 235 (298)
++||+||+|++.+++|...+..+++.++++.|++++|||+++.+..+...++.+|..+.
T Consensus 169 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 169 TYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999998775
No 13
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=6.7e-40 Score=267.37 Aligned_cols=202 Identities=34% Similarity=0.640 Sum_probs=188.2
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHH
Q 022383 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (298)
Q Consensus 33 ~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (298)
.+|+++++++.+.++|.++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.....++++||++|+++
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 82 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRE 82 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHH
Confidence 47999999999999999999999999999999999999999999999999999999999998876666779999999999
Q ss_pred HHHHHHHHHHHhhccC-CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc
Q 022383 113 LATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (298)
Q Consensus 113 l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~ 191 (298)
|+.|+.+.++++.... +..+..++|+.........+..+++|+|+||+++...+..+...+.+++++|+||+|++.+.+
T Consensus 83 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 162 (206)
T 1vec_A 83 LALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162 (206)
T ss_dssp HHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhhC
Confidence 9999999999988766 788899999988887777778889999999999999998888888999999999999999989
Q ss_pred cHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEE
Q 022383 192 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKI 234 (298)
Q Consensus 192 ~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~ 234 (298)
+...+..+++.++++.|++++|||+++.+..++..++.+|..+
T Consensus 163 ~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 163 FVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp THHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred cHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 9999999999999899999999999999999999999988765
No 14
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=3.2e-40 Score=273.95 Aligned_cols=211 Identities=34% Similarity=0.561 Sum_probs=186.0
Q ss_pred cccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEE
Q 022383 25 TTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA 104 (298)
Q Consensus 25 ~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~ 104 (298)
....+.+..+|+++++++.+.++|.++||..|+++|.++++.+.+|+|+++++|||+|||++|++|++..+.....++++
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 95 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQI 95 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCE
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceE
Confidence 34445667789999999999999999999999999999999999999999999999999999999999988766667799
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccC-CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEech
Q 022383 105 LILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDE 183 (298)
Q Consensus 105 lil~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE 183 (298)
||++|+++|+.|+.+.++++.... ++++..++|+.....+...+ .+++|+|+||+++..++..+.+.+.+++++|+||
T Consensus 96 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDE 174 (230)
T 2oxc_A 96 LILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDE 174 (230)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESS
T ss_pred EEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCC
Confidence 999999999999999999987655 78899999988876665554 4689999999999999988888889999999999
Q ss_pred hhHhhccc-cHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEe
Q 022383 184 SDEMLSRG-FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 236 (298)
Q Consensus 184 ~h~~~~~~-~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 236 (298)
+|++.+++ |...+..+++.+++..|++++|||+++.+..++..++.+|..+.+
T Consensus 175 ah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 175 ADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp HHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred chHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 99999887 999999999999989999999999999999999999999887654
No 15
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=284.73 Aligned_cols=207 Identities=37% Similarity=0.591 Sum_probs=186.1
Q ss_pred CCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcC--CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEE
Q 022383 28 GVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (298)
Q Consensus 28 ~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~l 105 (298)
+.....+|++++|++.+.++|.++||..|+++|.++++.++.| +|+++++|||+|||++|++|+++.+.....++++|
T Consensus 87 p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~l 166 (300)
T 3fmo_B 87 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL 166 (300)
T ss_dssp CCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEE
Confidence 3445679999999999999999999999999999999999987 99999999999999999999999998777788999
Q ss_pred EEcCcHHHHHHHHHHHHHhhccC-CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc-cCccCCCccEEEech
Q 022383 106 ILSPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDE 183 (298)
Q Consensus 106 il~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~-~~~~~~~l~~vViDE 183 (298)
|++||++|+.|+.+.++.++... ++.+....|+....... ..+++|+|+||++|..++.+ +.++++++++||+||
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDE 243 (300)
T 3fmo_B 167 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDE 243 (300)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETT
T ss_pred EEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeC
Confidence 99999999999999999998764 67888888876543321 45679999999999999966 567889999999999
Q ss_pred hhHhhc-cccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEec
Q 022383 184 SDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK 237 (298)
Q Consensus 184 ~h~~~~-~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 237 (298)
+|++.+ .+|...+..+++.+++.+|++++|||+++.+..+...++.+|..+.+.
T Consensus 244 ad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 244 ADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp HHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred HHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 999997 689999999999999999999999999999999999999999988764
No 16
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.5e-40 Score=277.11 Aligned_cols=213 Identities=57% Similarity=0.954 Sum_probs=181.5
Q ss_pred cccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEE
Q 022383 25 TTEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQA 104 (298)
Q Consensus 25 ~~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~ 104 (298)
.+..+++..+|+++++++.+.++|.++||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+.....+.++
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~ 101 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQA 101 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCE
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceE
Confidence 33455677899999999999999999999999999999999999999999999999999999999999998766567799
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcC-CcEEEeChHHHHHHHhccCccCCCccEEEech
Q 022383 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDE 183 (298)
Q Consensus 105 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE 183 (298)
||++|+++|+.|+.+.+++++...++.+..+.|+.....+...+..+ ++|+|+||+++..++..+...+.++++||+||
T Consensus 102 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDE 181 (237)
T 3bor_A 102 LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDE 181 (237)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEES
T ss_pred EEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECC
Confidence 99999999999999999999888888888888887766665556544 89999999999999988888889999999999
Q ss_pred hhHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEec
Q 022383 184 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK 237 (298)
Q Consensus 184 ~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 237 (298)
+|++.++++...+..+++.+++..|++++|||+++.+..+...++.+|..+.+.
T Consensus 182 ah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 182 ADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred chHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999887653
No 17
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.1e-40 Score=305.51 Aligned_cols=265 Identities=37% Similarity=0.603 Sum_probs=180.4
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcC--CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEE
Q 022383 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL 107 (298)
Q Consensus 30 ~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil 107 (298)
....+|++++|++.+.++|.++||..|+++|.++++.++.+ +++++++|||+|||++|++|++..+.....++++||+
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil 168 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEE
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 34668999999999999999999999999999999999987 9999999999999999999999998877777799999
Q ss_pred cCcHHHHHHHHHHHHHhhccC-CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc-cCccCCCccEEEechhh
Q 022383 108 SPTRELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESD 185 (298)
Q Consensus 108 ~p~~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~-~~~~~~~l~~vViDE~h 185 (298)
+|+++|+.|+.+.++++.... ++.+....++...... ...+++|+|+||+++..++.+ ..+.+.++++||+||+|
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah 245 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHH
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHH
Confidence 999999999999999987654 5667777766543321 134579999999999998866 56678999999999999
Q ss_pred Hhhc-cccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHH
Q 022383 186 EMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLC 264 (298)
Q Consensus 186 ~~~~-~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 264 (298)
.+.+ .++...+..+.+.+++.+|++++|||+++....+...++.+|..+...........+.+.+..+.....+...+.
T Consensus 246 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 325 (479)
T 3fmp_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 325 (479)
T ss_dssp HHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------
T ss_pred HHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHH
Confidence 9987 578888999999999999999999999999999999999999988888777777788888888887777888888
Q ss_pred HHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 265 DLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 265 ~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
.++......++||||++++.|+.+++.|+..++
T Consensus 326 ~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~ 358 (479)
T 3fmp_B 326 NLYGAITIAQAMIFCHTRKTASWLAAELSKEGH 358 (479)
T ss_dssp ---------------------------------
T ss_pred HHHhhccCCceEEEeCcHHHHHHHHHHHHhCCc
Confidence 888877778999999999999999999987654
No 18
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.5e-40 Score=276.73 Aligned_cols=208 Identities=33% Similarity=0.543 Sum_probs=192.8
Q ss_pred CccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEc
Q 022383 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (298)
Q Consensus 29 ~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (298)
..+..+|+++++++.+.++|+++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.....++++||++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~ 118 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLT 118 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEEC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999887766677899999
Q ss_pred CcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc-cCccCCCccEEEechhhHh
Q 022383 109 PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEM 187 (298)
Q Consensus 109 p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~-~~~~~~~l~~vViDE~h~~ 187 (298)
|+++|+.|+.+.++++....++++..++|+.....+...+..+++|+|+||+++...+.. ..+.+.++++||+||+|++
T Consensus 119 Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 198 (249)
T 3ber_A 119 PTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRI 198 (249)
T ss_dssp SSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhh
Confidence 999999999999999988888999999999888777777778899999999999998876 5677899999999999999
Q ss_pred hccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEe
Q 022383 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 236 (298)
Q Consensus 188 ~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 236 (298)
.+++|...+..+++.+++..|++++|||+++.+..+...++.+|..+.+
T Consensus 199 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 199 LNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp HHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEEC
T ss_pred hccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEe
Confidence 9999999999999999989999999999999999999999999988765
No 19
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=5.2e-40 Score=271.50 Aligned_cols=212 Identities=55% Similarity=0.919 Sum_probs=185.1
Q ss_pred ccCCccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEE
Q 022383 26 TEGVEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQAL 105 (298)
Q Consensus 26 ~~~~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~l 105 (298)
+.-++++.+|+++++++.+.+.|.++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.....++++|
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~l 86 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQAL 86 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEE
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEE
Confidence 33456678999999999999999999999999999999999999999999999999999999999999987766678999
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhh
Q 022383 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD 185 (298)
Q Consensus 106 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h 185 (298)
|++|+++|+.|+.+.++++....++++..++|+.........+.+ ++|+|+||+++...+......+.++++||+||+|
T Consensus 87 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah 165 (224)
T 1qde_A 87 MLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 165 (224)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred EEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh
Confidence 999999999999999999988888999999998776665555444 8999999999999998888888999999999999
Q ss_pred HhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecC
Q 022383 186 EMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKR 238 (298)
Q Consensus 186 ~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 238 (298)
++.++++...+..+++.+++..|++++|||+++.+..+...++.+|..+.+..
T Consensus 166 ~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 166 EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred HHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 99999999999999999999999999999999999999999999998887654
No 20
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2e-40 Score=273.08 Aligned_cols=206 Identities=34% Similarity=0.559 Sum_probs=188.3
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 32 ~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
..+|+++++++.+.++|+++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.....+++++|++|++
T Consensus 3 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 3 ETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp -CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 46799999999999999999999999999999999999999999999999999999999999987766677999999999
Q ss_pred HHHHHHHHHHHHhhccC----CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHh
Q 022383 112 ELATQTEKVILAIGDFI----NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (298)
Q Consensus 112 ~l~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~ 187 (298)
+|+.|+.+.++++.... ++.+..++|+.........+..+++|+|+||+++...+..+...+.+++++|+||+|.+
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 162 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 162 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH
Confidence 99999999999988766 67888888888766655555567899999999999999888888899999999999999
Q ss_pred hccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEec
Q 022383 188 LSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK 237 (298)
Q Consensus 188 ~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 237 (298)
.++++...+..+++.++++.|++++|||+++.+.+++..++.+|..+...
T Consensus 163 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 163 LDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp HHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred hhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999899999999999999999999999999887654
No 21
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.9e-38 Score=280.32 Aligned_cols=258 Identities=33% Similarity=0.552 Sum_probs=224.8
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcC-CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCc
Q 022383 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (298)
Q Consensus 32 ~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~-~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (298)
..+|+++++++.+.++|+++||..|+++|.++++.+.++ +++++.+|||+|||++|+.|++..+... .+.+++|++|+
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~ 83 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPT 83 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSC
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCC
Confidence 357999999999999999999999999999999999988 7999999999999999999999887553 45689999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc
Q 022383 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (298)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~ 190 (298)
++|+.|+.+.++++....++.+....|+.........+. +++|+|+||+++...+......+.++++||+||+|.+.++
T Consensus 84 ~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~ 162 (367)
T 1hv8_A 84 RELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNM 162 (367)
T ss_dssp HHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhh
Confidence 999999999999998888888999999887766655554 6899999999999999888888899999999999999999
Q ss_pred ccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhC
Q 022383 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 270 (298)
Q Consensus 191 ~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~ 270 (298)
++...+..++..+++..+++++|||+++........++.++..+.... ...+.+.+..+.... +...+..+++ .
T Consensus 163 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~l~~~l~-~ 236 (367)
T 1hv8_A 163 GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENE-RFEALCRLLK-N 236 (367)
T ss_dssp TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGG-HHHHHHHHHC-S
T ss_pred chHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHH-HHHHHHHHHh-c
Confidence 999999999999988999999999999998888888887766555432 235677777776665 8888888887 3
Q ss_pred CCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 271 TITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 271 ~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
...++||||++++.++.+++.|+..|+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~ 263 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGF 263 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC
Confidence 457999999999999999999988764
No 22
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=265.24 Aligned_cols=208 Identities=28% Similarity=0.499 Sum_probs=185.6
Q ss_pred CccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC----CCCeEE
Q 022383 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQA 104 (298)
Q Consensus 29 ~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~----~~~~~~ 104 (298)
+++..+|+++++++.+.++|.++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+... ..++++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~ 100 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGV 100 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCE
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceE
Confidence 4567789999999999999999999999999999999999999999999999999999999999886432 235689
Q ss_pred EEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhcc-CccCCCccEEEech
Q 022383 105 LILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDE 183 (298)
Q Consensus 105 lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~-~~~~~~l~~vViDE 183 (298)
||++|+++|+.|+.+.+++++...++.+..++|+.........+ .+++|+|+||+++...+... .+.+.+++++|+||
T Consensus 101 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDE 179 (236)
T 2pl3_A 101 LIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDE 179 (236)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETT
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeC
Confidence 99999999999999999999888888999999988776655555 57899999999999988764 57788999999999
Q ss_pred hhHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEec
Q 022383 184 SDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK 237 (298)
Q Consensus 184 ~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~ 237 (298)
+|++.++++...+..+++.+++..|++++|||+++.+..+.+.++.+|..+.+.
T Consensus 180 ah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 180 ADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred hHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999887654
No 23
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.9e-38 Score=258.95 Aligned_cols=201 Identities=35% Similarity=0.584 Sum_probs=184.2
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC---CCCeEEEEEcCc
Q 022383 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPT 110 (298)
Q Consensus 34 ~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~---~~~~~~lil~p~ 110 (298)
+|+++++++.+.++|.++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+... ..+++++|++|+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 69999999999999999999999999999999999999999999999999999999999987542 346789999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcc
Q 022383 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSR 190 (298)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~ 190 (298)
++|+.|+.+.++++... +++..++|+.........+..+++|+|+||+++...+..+...+.+++++|+||+|++.++
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 99999999999998654 6778888988877777777778999999999999999888888999999999999999999
Q ss_pred ccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEe
Q 022383 191 GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILV 236 (298)
Q Consensus 191 ~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~ 236 (298)
++...+..+++.+++..|++++|||+++.+..+...++.+|..+.+
T Consensus 160 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 160 GFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp TCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred chHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999989999999999999999999999999987754
No 24
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.1e-38 Score=261.22 Aligned_cols=205 Identities=36% Similarity=0.602 Sum_probs=184.8
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCc
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (298)
...+|+++++++.+.++|.++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.....+++++|++|+
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt 91 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHT 91 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSC
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCC
Confidence 34579999999999999999999999999999999999999999999999999999999999988766556789999999
Q ss_pred HHHHHHHHHHHHHhhccC-CceEEEEEcCCchHHHHHHhh-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhh
Q 022383 111 RELATQTEKVILAIGDFI-NIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~ 188 (298)
++|+.|+.+.++++.... ++++..++|+.....+...+. ..++|+|+||+++..++......+.+++++|+||+|++.
T Consensus 92 ~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~ 171 (220)
T 1t6n_A 92 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 171 (220)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHh
Confidence 999999999999988765 788999999988776666555 457999999999999998888889999999999999998
Q ss_pred c-cccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEE
Q 022383 189 S-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKIL 235 (298)
Q Consensus 189 ~-~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~ 235 (298)
+ .++...+..+++.++++.|++++|||+++.+..+...++.+|..+.
T Consensus 172 ~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 172 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp SSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred cccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 7 4788899999999988999999999999999999999999998764
No 25
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.1e-38 Score=266.80 Aligned_cols=201 Identities=28% Similarity=0.500 Sum_probs=179.2
Q ss_pred ccCcccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC----CCCeEEE
Q 022383 32 ITSFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS----SREVQAL 105 (298)
Q Consensus 32 ~~~~~~l~--l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~----~~~~~~l 105 (298)
..+|++++ +++.+.++|+++||..|+++|.++++.+..|+|+++++|||+|||++|++|++..+... ..+.++|
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~l 130 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL 130 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEE
Confidence 34666776 99999999999999999999999999999999999999999999999999999887542 1356899
Q ss_pred EEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhcc-CccCCCccEEEechh
Q 022383 106 ILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK-TLRTRAIKLLVLDES 184 (298)
Q Consensus 106 il~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~-~~~~~~l~~vViDE~ 184 (298)
|++|+++|+.|+.+.++++....+..+..+.|+.........+..+++|+|+||+++...+... .+.+.++++||+||+
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999999999999999988888999999998888887778788999999999999988764 477899999999999
Q ss_pred hHhhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCE
Q 022383 185 DEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPV 232 (298)
Q Consensus 185 h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~ 232 (298)
|++.+++|...+..+++.+++.+|++++|||+++.+..+.+.++.++.
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999999988876543
No 26
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=9.4e-38 Score=292.07 Aligned_cols=267 Identities=25% Similarity=0.370 Sum_probs=214.2
Q ss_pred CccccCcccCC----CCHHHHHHHHHCCCCCChHHHHHHHHHhh--cCCcEEEEcCCCCchHHHHHHHHHHhhccCC---
Q 022383 29 VEAITSFDAMG----IKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS--- 99 (298)
Q Consensus 29 ~~~~~~~~~l~----l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~--- 99 (298)
+....+|+++. |++++.++|.++||..|+|+|.++++.++ .|+++++++|||+|||++|++|++..+....
T Consensus 13 ~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~ 92 (579)
T 3sqw_A 13 NSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS 92 (579)
T ss_dssp SCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccc
Confidence 34445666654 99999999999999999999999999999 7899999999999999999999999875532
Q ss_pred -CCeEEEEEcCcHHHHHHHHHHHHHhhc----cCCceEEEEEcCCchHHHHHHhh-cCCcEEEeChHHHHHHHhcc-Ccc
Q 022383 100 -REVQALILSPTRELATQTEKVILAIGD----FINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRK-TLR 172 (298)
Q Consensus 100 -~~~~~lil~p~~~l~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~~~~~-~~~ 172 (298)
.++++|||+|+++|+.|+.+.++++.. .....+....|+.........+. .+++|+|+||++|..++... ...
T Consensus 93 ~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 93 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 346899999999999999999998763 23467788888887776666653 57899999999999988764 456
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhCC-------CCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCC----cc
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD----EL 241 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~-------~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~ 241 (298)
+.++++||+||||++.+++|...+..++..++ ..+|++++|||+++.+..+...++..+..+..... ..
T Consensus 173 ~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~ 252 (579)
T 3sqw_A 173 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 252 (579)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred cccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccc
Confidence 78999999999999999999999888877653 36799999999999999999888888877665432 22
Q ss_pred CcCCceEEEEEecCccchH----HHHHHHHhh-CCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 242 TLEGIKQFFVAVEREEWKF----DTLCDLYDT-LTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 242 ~~~~i~~~~~~~~~~~~k~----~~l~~ll~~-~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
....+.+.+........+. ..+...+.. ....++||||+|++.|+.+++.|+..
T Consensus 253 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~ 311 (579)
T 3sqw_A 253 AHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNE 311 (579)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHh
Confidence 3345666666666543232 223333333 45679999999999999999999876
No 27
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.5e-38 Score=264.11 Aligned_cols=219 Identities=24% Similarity=0.448 Sum_probs=187.5
Q ss_pred ceeecccCCccccCcccC----CCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhc
Q 022383 21 MVFETTEGVEAITSFDAM----GIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVD 96 (298)
Q Consensus 21 ~~~~~~~~~~~~~~~~~l----~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~ 96 (298)
..++....+.++.+|+++ ++++.+.+++.++||..|+++|.++++.+.+|+++++++|||+|||++|++|++..+.
T Consensus 13 i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~ 92 (245)
T 3dkp_A 13 IHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLK 92 (245)
T ss_dssp EEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred eEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 345667778889999987 8999999999999999999999999999999999999999999999999999999886
Q ss_pred cC-CCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHH-HHhhcCCcEEEeChHHHHHHHhcc--Ccc
Q 022383 97 TS-SREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI-RKLEHGVHVVSGTPGRVCDMIKRK--TLR 172 (298)
Q Consensus 97 ~~-~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ilV~Tp~~l~~~~~~~--~~~ 172 (298)
.. ..++++||++|+++|+.|+.+.++++....++.+..++|+....... .....+++|+|+||+++..++... .+.
T Consensus 93 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~ 172 (245)
T 3dkp_A 93 QPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGID 172 (245)
T ss_dssp SCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCC
T ss_pred hcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcc
Confidence 43 34668999999999999999999999888888887776654332221 122457899999999999999875 577
Q ss_pred CCCccEEEechhhHhhcc---ccHHHHHHHHHhCC-CCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCC
Q 022383 173 TRAIKLLVLDESDEMLSR---GFKDQIYDVYRYLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD 239 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~---~~~~~i~~i~~~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 239 (298)
+.++++||+||+|++.++ ++...+..++..+. +..|++++|||+++.+..+...++.+|..+.+...
T Consensus 173 ~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 173 LASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp CTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred cccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 899999999999999884 68888888887764 57899999999999999999999999999887643
No 28
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.6e-36 Score=263.71 Aligned_cols=241 Identities=24% Similarity=0.443 Sum_probs=207.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHH
Q 022383 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (298)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (298)
|++++.++|+++||..|+++|.++++.+.+|+++++++|||+|||++|+.|++.. +.+++|++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999874 4579999999999999999
Q ss_pred HHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHH
Q 022383 120 VILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199 (298)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i 199 (298)
.++++....+..+..++|+.........+. .++|+|+||+++...+......+.++++||+||+|++.++++...+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 75 HIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 999998888889999999888776655554 4899999999999998887778899999999999999999999999999
Q ss_pred HHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEe
Q 022383 200 YRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFC 279 (298)
Q Consensus 200 ~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~ 279 (298)
+...+...+++++|||+++........++.++..+... .....+.+.+..+.... + .....+.....+++||||
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~lvf~ 227 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDW-R--SKVQALRENKDKGVIVFV 227 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSS-H--HHHHHHHTCCCSSEEEEC
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHH-H--HHHHHHHhCCCCcEEEEE
Confidence 99999899999999999999888888888877766432 33445666666665443 2 233556666778999999
Q ss_pred cchhhHHHHHHHHh
Q 022383 280 NTKRKIYYSVFYFW 293 (298)
Q Consensus 280 ~s~~~~~~l~~~L~ 293 (298)
++++.++.+++.|+
T Consensus 228 ~~~~~~~~l~~~l~ 241 (337)
T 2z0m_A 228 RTRNRVAKLVRLFD 241 (337)
T ss_dssp SCHHHHHHHHTTCT
T ss_pred cCHHHHHHHHHHhh
Confidence 99999999998875
No 29
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.1e-36 Score=284.12 Aligned_cols=263 Identities=25% Similarity=0.374 Sum_probs=210.2
Q ss_pred cCcccCC----CCHHHHHHHHHCCCCCChHHHHHHHHHhh--cCCcEEEEcCCCCchHHHHHHHHHHhhccCC----CCe
Q 022383 33 TSFDAMG----IKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REV 102 (298)
Q Consensus 33 ~~~~~l~----l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~----~~~ 102 (298)
.+|+++. |++++.++|.++||..|+|+|.++++.++ .++|+++++|||+|||++|++|++..+.... .++
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 147 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 147 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe
Confidence 3455553 99999999999999999999999999999 6789999999999999999999999876543 245
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhcc----CCceEEEEEcCCchHHHHHHh-hcCCcEEEeChHHHHHHHhcc-CccCCCc
Q 022383 103 QALILSPTRELATQTEKVILAIGDF----INIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRK-TLRTRAI 176 (298)
Q Consensus 103 ~~lil~p~~~l~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~ilV~Tp~~l~~~~~~~-~~~~~~l 176 (298)
++|||+|+++|+.|+.+.++++... ....+..+.|+.........+ ..+++|+|+||+++..++... ...++++
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 227 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccc
Confidence 8999999999999999999987532 245678888888776666555 457899999999999988764 4467889
Q ss_pred cEEEechhhHhhccccHHHHHHHHHhCC-------CCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCC----ccCcCC
Q 022383 177 KLLVLDESDEMLSRGFKDQIYDVYRYLP-------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD----ELTLEG 245 (298)
Q Consensus 177 ~~vViDE~h~~~~~~~~~~i~~i~~~~~-------~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 245 (298)
++||+||||++.+++|...+..++..++ +.+|++++|||+++.+..+...++..+..+..... ......
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHER 307 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTT
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcccccc
Confidence 9999999999999999999888876653 37899999999999999998888888877665432 223345
Q ss_pred ceEEEEEecCccchHHH----HHHHHhh-CCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 246 IKQFFVAVEREEWKFDT----LCDLYDT-LTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 246 i~~~~~~~~~~~~k~~~----l~~ll~~-~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
+.+.+........+... +...+.. ....++||||+|++.|+.+++.|+..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~ 362 (563)
T 3i5x_A 308 IDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNE 362 (563)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHH
T ss_pred CceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 66666666554333322 2222332 45679999999999999999999876
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.2e-38 Score=288.26 Aligned_cols=265 Identities=32% Similarity=0.494 Sum_probs=199.3
Q ss_pred CccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcC--CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEE
Q 022383 29 VEAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKG--RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALI 106 (298)
Q Consensus 29 ~~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~--~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~li 106 (298)
+.+...|...++++.+.+.+.+.|+..|+++|.++++.+.++ +++++++|||+|||++|+++++..+.....++++||
T Consensus 115 p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLv 194 (508)
T 3fho_A 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAIC 194 (508)
T ss_dssp ------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEE
T ss_pred ccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEE
Confidence 344556667788999999999999999999999999999988 999999999999999999999999877766779999
Q ss_pred EcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhH
Q 022383 107 LSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (298)
Q Consensus 107 l~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~ 186 (298)
++|+++|+.|+.+.+++++...++.+....++.... ....+++|+|+||+++...+....+.+.++++||+||+|.
T Consensus 195 l~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~ 270 (508)
T 3fho_A 195 LAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPK----GAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADN 270 (508)
T ss_dssp ECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHH
T ss_pred EECcHHHHHHHHHHHHHhCCccCeeEEEEeCCcccc----cccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhh
Confidence 999999999999999999877666665555543322 1234689999999999999988888899999999999999
Q ss_pred hhc-cccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHH
Q 022383 187 MLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 265 (298)
Q Consensus 187 ~~~-~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 265 (298)
+.+ .++...+..+.+.+++..|++++|||+++....+...+..++..+...........+.+.+..+.....+...+..
T Consensus 271 ~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 350 (508)
T 3fho_A 271 MLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVE 350 (508)
T ss_dssp HTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHH
Confidence 987 5788999999999999999999999999999999999999988887776666677788888888777778888999
Q ss_pred HHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 266 LYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 266 ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
+++....+++||||++++.|+.+++.|.+.++
T Consensus 351 ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~ 382 (508)
T 3fho_A 351 LYGLLTIGQSIIFCKKKDTAEEIARRMTADGH 382 (508)
T ss_dssp HHC---CCCEEEBCSSTTTTTHHHHHHTTTTC
T ss_pred HHHhcCCCcEEEEECCHHHHHHHHHHHHhCCC
Confidence 99888888999999999999999999987654
No 31
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=8.1e-35 Score=271.13 Aligned_cols=254 Identities=13% Similarity=0.162 Sum_probs=193.2
Q ss_pred cCcccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 33 TSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 33 ~~~~~l~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
..++++++++.+.+.|++ +||..|+|+|.++++.+++|+|+++++|||+|||+||++|++.. ..++|||+|++
T Consensus 21 w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~------~g~~lVisP~~ 94 (591)
T 2v1x_A 21 WNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS------DGFTLVICPLI 94 (591)
T ss_dssp GCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS------SSEEEEECSCH
T ss_pred cccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc------CCcEEEEeCHH
Confidence 344568899999999999 79999999999999999999999999999999999999999863 34899999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHH---h---hcCCcEEEeChHHHH---HHHh--ccCccCCCccEEE
Q 022383 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---L---EHGVHVVSGTPGRVC---DMIK--RKTLRTRAIKLLV 180 (298)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~ilV~Tp~~l~---~~~~--~~~~~~~~l~~vV 180 (298)
+|+.|+.+.++++ ++++..++|+....+.... + ...++|+|+||++|. .++. .....+.++++||
T Consensus 95 ~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iV 170 (591)
T 2v1x_A 95 SLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIA 170 (591)
T ss_dssp HHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEE
Confidence 9999999999887 6788888888776544322 2 457899999999885 2222 1244577899999
Q ss_pred echhhHhhccc--cHHHHHH--HHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecC-
Q 022383 181 LDESDEMLSRG--FKDQIYD--VYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVER- 255 (298)
Q Consensus 181 iDE~h~~~~~~--~~~~i~~--i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~- 255 (298)
|||||++.+|+ |...+.. .+....+..+++++|||+++.+...+..++..+....+.. .....++...+.....
T Consensus 171 iDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~~r~nl~~~v~~~~~~ 249 (591)
T 2v1x_A 171 VDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SFNRPNLYYEVRQKPSN 249 (591)
T ss_dssp EETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CCCCTTEEEEEEECCSS
T ss_pred EECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CCCCcccEEEEEeCCCc
Confidence 99999999887 6655544 3333345799999999999988777776665443222221 2333444443333222
Q ss_pred ccchHHHHHHHHhh-CCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 256 EEWKFDTLCDLYDT-LTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 256 ~~~k~~~l~~ll~~-~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
...+...+..++.. ..++++||||+|++.|+.+++.|+..|+
T Consensus 250 ~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~ 292 (591)
T 2v1x_A 250 TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGI 292 (591)
T ss_dssp HHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCC
Confidence 12345667777754 3567999999999999999999998765
No 32
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.2e-35 Score=265.37 Aligned_cols=239 Identities=17% Similarity=0.200 Sum_probs=186.6
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHH
Q 022383 43 DLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (298)
Q Consensus 43 ~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 121 (298)
.+.+.+++ ++| .|+++|.++++.+++|+|+++++|||+|||++|+++++.... .++++||++|+++|+.|+.+.+
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~---~~~~~lil~Pt~~L~~q~~~~~ 84 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERL 84 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc---CCCEEEEEECCHHHHHHHHHHH
Confidence 45556666 455 699999999999999999999999999999999999888763 3668999999999999999999
Q ss_pred HHhhccCCceEEEEEcCCch---HHHHHHhhcC-CcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhc--------
Q 022383 122 LAIGDFINIQAHACVGGKSV---GEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS-------- 189 (298)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~-------- 189 (298)
++++. .++++..++|+.+. ..+...+..+ ++|+|+||+++...+.. +.+.++++||+||+|++.+
T Consensus 85 ~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~ 161 (414)
T 3oiy_A 85 QKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTL 161 (414)
T ss_dssp HHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHH
T ss_pred HHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhH
Confidence 99887 78999999999887 4445555555 99999999999887764 6677999999999998764
Q ss_pred ---cccHHH-HHHHHHhCC-----------CCccEEEEEee-CchhHH-HHHHhcCCCCEEEEecCCccCcCCceEEEEE
Q 022383 190 ---RGFKDQ-IYDVYRYLP-----------PDLQVVLISAT-LPHEIL-EMTTKFMTDPVKILVKRDELTLEGIKQFFVA 252 (298)
Q Consensus 190 ---~~~~~~-i~~i~~~~~-----------~~~~~v~~SAT-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 252 (298)
.+|... +..+++.++ +..|++++||| .++.+. .+...++. +...........+.+.+..
T Consensus 162 l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~ 237 (414)
T 3oiy_A 162 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRIS 237 (414)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEEES
T ss_pred HhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchheeec
Confidence 556666 777887765 78999999999 554433 22222221 1222233444556666655
Q ss_pred ecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 253 VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 253 ~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
+ .+...+..+++. .++++||||++++.|+.+++.|+..|+
T Consensus 238 ~----~~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~ 277 (414)
T 3oiy_A 238 S----RSKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKF 277 (414)
T ss_dssp S----CCHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred c----CHHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 4 266677777776 348999999999999999999998765
No 33
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.7e-34 Score=263.91 Aligned_cols=248 Identities=15% Similarity=0.233 Sum_probs=191.9
Q ss_pred cCcccCCCCHHHHHHHHH-CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 33 TSFDAMGIKDDLLRGIYQ-YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 33 ~~~~~l~l~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
.+|+++++++.+.+.|++ +||..|+++|.++++.+++|+|+++++|||+|||++|++|++.. ...+||++|++
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~------~g~~lvi~P~~ 75 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL------NGLTVVVSPLI 75 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS------SSEEEEECSCH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh------CCCEEEECChH
Confidence 579999999999999999 89999999999999999999999999999999999999999854 34799999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHH---H-hhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHh
Q 022383 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---K-LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (298)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~ 187 (298)
+|+.|+.+.++++ ++.+..++++........ . ..+.++|+++||+++........+...++++|||||+|++
T Consensus 76 aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i 151 (523)
T 1oyw_A 76 SLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (523)
T ss_dssp HHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred HHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCcccc
Confidence 9999999998875 677888888776554332 2 2356899999999996432222344578999999999999
Q ss_pred hccc--cHHHHHH---HHHhCCCCccEEEEEeeCchhHHHHHHhc--CCCCEEEEecCCccCcCCceEEEEEecCccchH
Q 022383 188 LSRG--FKDQIYD---VYRYLPPDLQVVLISATLPHEILEMTTKF--MTDPVKILVKRDELTLEGIKQFFVAVEREEWKF 260 (298)
Q Consensus 188 ~~~~--~~~~i~~---i~~~~~~~~~~v~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~ 260 (298)
.+|+ |...+.. +.+.+ ++.+++++|||+++.....+... +.++..+.. . ....++... ..... .+.
T Consensus 152 ~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~-~--~~r~~l~~~--v~~~~-~~~ 224 (523)
T 1oyw_A 152 SQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQIS-S--FDRPNIRYM--LMEKF-KPL 224 (523)
T ss_dssp CTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEEC-C--CCCTTEEEE--EEECS-SHH
T ss_pred CcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeC-C--CCCCceEEE--EEeCC-CHH
Confidence 9886 6555544 34445 46899999999998765544333 234443332 1 223333332 22333 377
Q ss_pred HHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 261 DTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 261 ~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
..+..++....++++||||+|++.++.+++.|+..|+
T Consensus 225 ~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~ 261 (523)
T 1oyw_A 225 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGI 261 (523)
T ss_dssp HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCC
Confidence 8888888887778999999999999999999998775
No 34
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.8e-33 Score=269.26 Aligned_cols=248 Identities=15% Similarity=0.210 Sum_probs=192.4
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHH
Q 022383 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (298)
Q Consensus 34 ~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (298)
+|+++++++++.+.+++.||..|+++|.++++. +.+++++++++|||+|||++|.++++..+... +.+++|++|+++
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~ra 79 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKA 79 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGG
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHH
Confidence 589999999999999999999999999999998 88999999999999999999999999887632 458999999999
Q ss_pred HHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcccc
Q 022383 113 LATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF 192 (298)
Q Consensus 113 l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~ 192 (298)
|+.|+.+.++++.. .++++..++|+...... ...+++|+|+||+++..+++.....++++++||+||+|.+.++++
T Consensus 80 La~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (720)
T 2zj8_A 80 LAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDR 155 (720)
T ss_dssp GHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTT
T ss_pred HHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcc
Confidence 99999999975543 47899999997655432 124689999999999999888766688999999999999988888
Q ss_pred HHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEE------EecC----ccchHHH
Q 022383 193 KDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFV------AVER----EEWKFDT 262 (298)
Q Consensus 193 ~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~----~~~k~~~ 262 (298)
...+..++..++.+.|++++|||+++. ..+.. ++..+. +.. ...+..+...+. .... ...+...
T Consensus 156 ~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~---~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (720)
T 2zj8_A 156 GATLEVILAHMLGKAQIIGLSATIGNP-EELAE-WLNAEL-IVS---DWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEEL 229 (720)
T ss_dssp HHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHH-HTTEEE-EEC---CCCSSEEEEEEEETTEEEETTSCEEECSSTTHH
T ss_pred cHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHH-HhCCcc-cCC---CCCCCcceEEEEeCCeeeccccchhhhhHHHHH
Confidence 899999988887789999999999763 44433 333211 111 111111111111 1110 1224555
Q ss_pred HHHHHhhCCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 263 LCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 263 l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
+...+. .++++||||+++++|+.++..|.+.
T Consensus 230 ~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~ 260 (720)
T 2zj8_A 230 VYDAIR--KKKGALIFVNMRRKAERVALELSKK 260 (720)
T ss_dssp HHHHHH--TTCCEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHh--CCCCEEEEecCHHHHHHHHHHHHHH
Confidence 555554 3489999999999999999999764
No 35
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.1e-32 Score=261.87 Aligned_cols=248 Identities=12% Similarity=0.153 Sum_probs=191.0
Q ss_pred cCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH-hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 33 TSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP-IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 33 ~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~-~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
.+|++++|++++.+.+++.||..|+++|.++++. +.+++++++++|||+|||+++.++++..+... +.+++|++|++
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r 85 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLR 85 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCH
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcH
Confidence 5799999999999999999999999999999999 78899999999999999999999999887643 45899999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc
Q 022383 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (298)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~ 191 (298)
+|+.|+.+.++.+. ..++++...+|+...... ...+++|+|+||+++..+++.....++++++|||||+|.+.++.
T Consensus 86 ~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~ 161 (715)
T 2va8_A 86 ALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPE 161 (715)
T ss_dssp HHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTT
T ss_pred HHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcc
Confidence 99999999996544 347889888888665432 12368999999999999998876668899999999999998778
Q ss_pred cHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEE------------EEec-----
Q 022383 192 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFF------------VAVE----- 254 (298)
Q Consensus 192 ~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------------~~~~----- 254 (298)
+...++.++.+++ +.|++++|||+++. ..+..++ ..+. +.. ...+..+...+ ...+
T Consensus 162 ~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~l-~~~~-~~~---~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (715)
T 2va8_A 162 RGPVVESVTIRAK-RRNLLALSATISNY-KQIAKWL-GAEP-VAT---NWRPVPLIEGVIYPERKKKEYNVIFKDNTTKK 234 (715)
T ss_dssp THHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHHH-TCEE-EEC---CCCSSCEEEEEEEECSSTTEEEEEETTSCEEE
T ss_pred cchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHHh-CCCc-cCC---CCCCCCceEEEEecCCcccceeeecCcchhhh
Confidence 8888888887776 79999999999753 4444333 2211 111 01111111111 1111
Q ss_pred --CccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 255 --REEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 255 --~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
....+...+...+. .++++||||+++++++.++..|++.
T Consensus 235 ~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~ 275 (715)
T 2va8_A 235 VHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANY 275 (715)
T ss_dssp EESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHH
Confidence 01224445555543 4589999999999999999999864
No 36
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-33 Score=274.68 Aligned_cols=249 Identities=16% Similarity=0.186 Sum_probs=198.0
Q ss_pred ccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 32 ITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 32 ~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
...|+.+++++.+...+...++..|+++|.++++.+.+|++++++||||+|||++|++|++..+.. +.+++|++|++
T Consensus 161 ~~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~Ptr 237 (1108)
T 3l9o_A 161 PPNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIK 237 (1108)
T ss_dssp SSCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSH
T ss_pred CCCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcH
Confidence 346777788887777777777778999999999999999999999999999999999999998754 56899999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc
Q 022383 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (298)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~ 191 (298)
+|+.|+++.+++... .+..++|+... ..+++|+|+||++|.+++......+.++++|||||+|++.+++
T Consensus 238 aLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~ 306 (1108)
T 3l9o_A 238 ALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE 306 (1108)
T ss_dssp HHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHH
T ss_pred HHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccc
Confidence 999999999998754 56778887663 3458999999999999998887778899999999999999999
Q ss_pred cHHHHHHHHHhCCCCccEEEEEeeCchh--HHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCc-------------
Q 022383 192 FKDQIYDVYRYLPPDLQVVLISATLPHE--ILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE------------- 256 (298)
Q Consensus 192 ~~~~i~~i~~~~~~~~~~v~~SAT~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------- 256 (298)
+...+..++..+++..|++++|||+++. +..++......|..+..... .+..+.+++......
T Consensus 307 rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~vd~~~~~~ 384 (1108)
T 3l9o_A 307 RGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKSTFR 384 (1108)
T ss_dssp HHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC--CSSCEEEEEEETTSSCCEEEEETTTEEC
T ss_pred hHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEeecCCcceeeeeccccchh
Confidence 9999999999999999999999999774 45677766767766655432 222233333221110
Q ss_pred -----------------------------------------cchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 257 -----------------------------------------EWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 257 -----------------------------------------~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
..+...+...+......++||||++++.|+.++..|...
T Consensus 385 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~ 464 (1108)
T 3l9o_A 385 EENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKL 464 (1108)
T ss_dssp HHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSH
T ss_pred hhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhc
Confidence 112233444444556679999999999999999998764
Q ss_pred c
Q 022383 296 W 296 (298)
Q Consensus 296 ~ 296 (298)
+
T Consensus 465 ~ 465 (1108)
T 3l9o_A 465 D 465 (1108)
T ss_dssp H
T ss_pred c
Confidence 3
No 37
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.4e-33 Score=267.66 Aligned_cols=247 Identities=14% Similarity=0.155 Sum_probs=186.5
Q ss_pred CcccCC--CCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 34 SFDAMG--IKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 34 ~~~~l~--l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
+|++++ +++.+.+.++++||..|+++|.++++.+.+++++++++|||+|||+++.++++..+.. +.+++|++|++
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~l~i~P~r 78 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK---GGKSLYVVPLR 78 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT---TCCEEEEESSH
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh---CCcEEEEeCcH
Confidence 588888 9999999999999999999999999999999999999999999999999999988764 45899999999
Q ss_pred HHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc
Q 022383 112 ELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (298)
Q Consensus 112 ~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~ 191 (298)
+|+.|+.+.++++. ..++++...+|+...... ...+++|+|+||+++..+++.....++++++||+||+|.+.+++
T Consensus 79 ~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~ 154 (702)
T 2p6r_A 79 ALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154 (702)
T ss_dssp HHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTT
T ss_pred HHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCC
Confidence 99999999996544 347889999988665432 12368999999999999998876668899999999999998877
Q ss_pred cHHHHHHHHHhC---CCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEE------EecC------c
Q 022383 192 FKDQIYDVYRYL---PPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFV------AVER------E 256 (298)
Q Consensus 192 ~~~~i~~i~~~~---~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~------~ 256 (298)
+...+..++..+ +++.|++++|||+++. ..+.. ++..+. +... ..+..+...+. .... .
T Consensus 155 r~~~~~~ll~~l~~~~~~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~---~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 228 (702)
T 2p6r_A 155 RGATLEILVTKMRRMNKALRVIGLSATAPNV-TEIAE-WLDADY-YVSD---WRPVPLVEGVLCEGTLELFDGAFSTSRR 228 (702)
T ss_dssp THHHHHHHHHHHHHHCTTCEEEEEECCCTTH-HHHHH-HTTCEE-EECC---CCSSCEEEEEECSSEEEEEETTEEEEEE
T ss_pred cccHHHHHHHHHHhcCcCceEEEECCCcCCH-HHHHH-HhCCCc-ccCC---CCCccceEEEeeCCeeeccCcchhhhhh
Confidence 777777766555 5789999999999862 44444 343222 1111 11111221111 1110 0
Q ss_pred cchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 257 EWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 257 ~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
..+...+...++ .++++||||+++++++.++..|.+.
T Consensus 229 ~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~ 265 (702)
T 2p6r_A 229 VKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAI 265 (702)
T ss_dssp CCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHH
Confidence 114455555554 4579999999999999999999764
No 38
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2.7e-32 Score=269.02 Aligned_cols=238 Identities=16% Similarity=0.193 Sum_probs=188.7
Q ss_pred HHHHHH-HCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHH
Q 022383 44 LLRGIY-QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVIL 122 (298)
Q Consensus 44 i~~~l~-~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~ 122 (298)
+.+.+. .+|| .|+++|.++++.+++|+|++++||||+|||++|+.+++..+. .++++||++|+++|+.|+.+.++
T Consensus 67 ~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~---~~~~~Lil~PtreLa~Q~~~~l~ 142 (1104)
T 4ddu_A 67 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR---KGKKSALVFPTVTLVKQTLERLQ 142 (1104)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT---TTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh---cCCeEEEEechHHHHHHHHHHHH
Confidence 333443 3677 499999999999999999999999999999999988888773 36689999999999999999999
Q ss_pred HhhccCCceEEEEEcCCch---HHHHHHhhcC-CcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhc---------
Q 022383 123 AIGDFINIQAHACVGGKSV---GEDIRKLEHG-VHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS--------- 189 (298)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~--------- 189 (298)
+++ ..++++..++|+.+. ..+...+..+ ++|+|+||++|.+++.. +.+.++++||+||+|++..
T Consensus 143 ~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L 219 (1104)
T 4ddu_A 143 KLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLL 219 (1104)
T ss_dssp TTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHH
T ss_pred Hhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhh
Confidence 977 678899999999877 4555666655 99999999999887764 6678999999999987554
Q ss_pred --cccHHH-HHHHHHhCC-----------CCccEEEEEee-CchhHHH-HHHhcCCCCEEEEecCCccCcCCceEEEEEe
Q 022383 190 --RGFKDQ-IYDVYRYLP-----------PDLQVVLISAT-LPHEILE-MTTKFMTDPVKILVKRDELTLEGIKQFFVAV 253 (298)
Q Consensus 190 --~~~~~~-i~~i~~~~~-----------~~~~~v~~SAT-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 253 (298)
++|... +..+++.++ +..|++++||| .+..+.. +....+. +.+........++.+.+..+
T Consensus 220 ~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~ 295 (1104)
T 4ddu_A 220 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS 295 (1104)
T ss_dssp HTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC
T ss_pred HhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec
Confidence 677777 888888776 78999999999 4554332 2333322 23333344556677777655
Q ss_pred cCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 254 EREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 254 ~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
+ +...+..+++.. ++++||||++++.|+.+++.|+..|+
T Consensus 296 ~----k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~ 334 (1104)
T 4ddu_A 296 R----SKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKF 334 (1104)
T ss_dssp C----CHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTC
T ss_pred C----HHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCC
Confidence 2 666777777763 48999999999999999999998775
No 39
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.98 E-value=1.2e-32 Score=271.51 Aligned_cols=232 Identities=16% Similarity=0.197 Sum_probs=181.5
Q ss_pred HHHH-HCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 46 RGIY-QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 46 ~~l~-~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
+.+. .+||. | ++|.++++.+++|+|+++++|||+|||+ |.+|++..+... ++++||++||++|+.|+.+.++++
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALK--GKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SCCEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CCeEEEEeccHHHHHHHHHHHHHH
Confidence 4444 48999 9 9999999999999999999999999998 888888877553 568999999999999999999999
Q ss_pred hccCCc----eEEEEEcCCchHHH---HHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHH
Q 022383 125 GDFINI----QAHACVGGKSVGED---IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (298)
Q Consensus 125 ~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~ 197 (298)
+...++ ++..++|+.+...+ ...+.+ ++|+|+||++|..++.. ++++++||+||+|++.++ ...+.
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~--~~~~~ 195 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKA--SKNVD 195 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTS--THHHH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhc--cccHH
Confidence 988888 89999999877653 334445 99999999999987765 669999999999999874 56777
Q ss_pred HHHHhCC-----------CCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHH
Q 022383 198 DVYRYLP-----------PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 266 (298)
Q Consensus 198 ~i~~~~~-----------~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 266 (298)
.++..++ ...|++++|||+++. ..+...++.++..+.+.........+.+.+. . ..+...+..+
T Consensus 196 ~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~-~~k~~~L~~l 270 (1054)
T 1gku_B 196 KLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---N-DESISTLSSI 270 (1054)
T ss_dssp HHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---S-CCCTTTTHHH
T ss_pred HHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---c-hhHHHHHHHH
Confidence 7777663 468899999999876 4222222222333333333344456666665 2 3366677778
Q ss_pred HhhCCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 267 YDTLTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 267 l~~~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
++.. ++++||||++++.|+.+++.|+..
T Consensus 271 l~~~-~~~~LVF~~t~~~a~~l~~~L~~~ 298 (1054)
T 1gku_B 271 LEKL-GTGGIIYARTGEEAEEIYESLKNK 298 (1054)
T ss_dssp HTTS-CSCEEEEESSHHHHHHHHHTTTTS
T ss_pred Hhhc-CCCEEEEEcCHHHHHHHHHHHhhc
Confidence 7765 478999999999999999999764
No 40
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.5e-30 Score=252.13 Aligned_cols=232 Identities=17% Similarity=0.233 Sum_probs=180.7
Q ss_pred HHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 022383 48 IYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDF 127 (298)
Q Consensus 48 l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (298)
...++|. |+++|.++++.+.+|+++++++|||+|||++|.++++..+.. +.+++|++|+++|++|+++.+++...
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~- 154 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG- 154 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS-
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC-
Confidence 3445776 999999999999999999999999999999999999887754 56899999999999999999988754
Q ss_pred CCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCc
Q 022383 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDL 207 (298)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~ 207 (298)
.+..++|+.... .+++|+|+||++|.+++......+.++++|||||+|.+.++++...+..++..++...
T Consensus 155 ---~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~ 224 (1010)
T 2xgj_A 155 ---DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 224 (1010)
T ss_dssp ---CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTC
T ss_pred ---CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCC
Confidence 577788876643 3479999999999999988777889999999999999999888999999999999999
Q ss_pred cEEEEEeeCchhH--HHHHHhcCCCCEEEEecCCccCcCCceEEEEEec---------Cc--------------------
Q 022383 208 QVVLISATLPHEI--LEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE---------RE-------------------- 256 (298)
Q Consensus 208 ~~v~~SAT~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~-------------------- 256 (298)
|++++|||+++.. ..++......+..+..... .+..+.+++.... ..
T Consensus 225 ~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (1010)
T 2xgj_A 225 RYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIG 302 (1010)
T ss_dssp EEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC--CSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----
T ss_pred eEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhc
Confidence 9999999998753 3444444455665554322 2223444433211 00
Q ss_pred -------------------------cchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhc
Q 022383 257 -------------------------EWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRW 296 (298)
Q Consensus 257 -------------------------~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~ 296 (298)
......+...+......++||||+++..|+.++..|...+
T Consensus 303 ~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~ 367 (1010)
T 2xgj_A 303 DDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLD 367 (1010)
T ss_dssp --------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSC
T ss_pred ccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC
Confidence 1122334444444455699999999999999999997754
No 41
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.97 E-value=9.2e-31 Score=249.91 Aligned_cols=174 Identities=16% Similarity=0.230 Sum_probs=140.5
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCC--CeEEEEEcCcHHHHHHHHHHH
Q 022383 44 LLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVI 121 (298)
Q Consensus 44 i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~ 121 (298)
+..+|..+||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+..... +.++||++|+++|+.|+.+.+
T Consensus 2 ~~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 2 EVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp -----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999999999999988765432 258999999999999999999
Q ss_pred HHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCc-cCCCccEEEechhhHhhccc-cHHHHHHH
Q 022383 122 LAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRG-FKDQIYDV 199 (298)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~-~~~~l~~vViDE~h~~~~~~-~~~~i~~i 199 (298)
+++....++++..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.... +...+...
T Consensus 82 ~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 82 SKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 99988778999999998876555556666799999999999999988766 78899999999999986553 33333333
Q ss_pred HHh-----CCCCccEEEEEeeCc
Q 022383 200 YRY-----LPPDLQVVLISATLP 217 (298)
Q Consensus 200 ~~~-----~~~~~~~v~~SAT~~ 217 (298)
+.. .++..+++++|||+.
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHhhcccCCCCCeEEEEeCccc
Confidence 332 246789999999996
No 42
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.97 E-value=1.7e-29 Score=234.80 Aligned_cols=164 Identities=16% Similarity=0.225 Sum_probs=139.2
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCC--CeEEEEEcCcHHHHHHHHHHHHHhhccCCceE
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFINIQA 132 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 132 (298)
.|+++|.++++.+++|+++++++|||+|||++|++|++..+..... ++++||++|+++|+.|+.+.++++....++++
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 5999999999999999999999999999999999999998866432 56899999999999999999999988888999
Q ss_pred EEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCc-cCCCccEEEechhhHhhccc-cHHHHHHHHHhC-----CC
Q 022383 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRG-FKDQIYDVYRYL-----PP 205 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~-~~~~l~~vViDE~h~~~~~~-~~~~i~~i~~~~-----~~ 205 (298)
..++|+.........+..+++|+|+||+++...+..+.+ .+.++++||+||||++...+ +...+...+... .+
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDP 163 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSC
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCC
Confidence 999999877766666666789999999999999988766 78899999999999997764 333333333332 24
Q ss_pred CccEEEEEeeCch
Q 022383 206 DLQVVLISATLPH 218 (298)
Q Consensus 206 ~~~~v~~SAT~~~ 218 (298)
..+++++|||++.
T Consensus 164 ~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 164 LPQVVGLTASVGV 176 (555)
T ss_dssp CCEEEEEESCCCC
T ss_pred CCeEEEEecCccc
Confidence 6799999999954
No 43
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.97 E-value=7.3e-30 Score=237.41 Aligned_cols=166 Identities=15% Similarity=0.183 Sum_probs=133.2
Q ss_pred CCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCC--CeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 022383 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDFIN 129 (298)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (298)
+...|+++|.++++.+++|+++++++|||+|||++|++|++..+..... ++++||++|+++|+.|+.+.++++....+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 4457999999999999999999999999999999999999998866432 56899999999999999999999988888
Q ss_pred ceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCc-cCCCccEEEechhhHhhccccHHHH-HHHHHh----C
Q 022383 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRGFKDQI-YDVYRY----L 203 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~-~~~~l~~vViDE~h~~~~~~~~~~i-~~i~~~----~ 203 (298)
+++..++|+.........+..+++|+|+||++|...+..+.+ .+.++++||+||||++.+++....+ ...+.. .
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~ 163 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSA 163 (556)
T ss_dssp CCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhccc
Confidence 999999999877666666666789999999999999988777 7899999999999999877643332 222222 1
Q ss_pred CCCccEEEEEeeCc
Q 022383 204 PPDLQVVLISATLP 217 (298)
Q Consensus 204 ~~~~~~v~~SAT~~ 217 (298)
.+..+++++|||++
T Consensus 164 ~~~~~~l~lSAT~~ 177 (556)
T 4a2p_A 164 SQLPQILGLTASVG 177 (556)
T ss_dssp --CCEEEEEESCCC
T ss_pred CCCCeEEEEeCCcc
Confidence 35689999999994
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=4e-30 Score=261.91 Aligned_cols=249 Identities=14% Similarity=0.224 Sum_probs=179.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHhh-cCCcEEEEcCCCCchHHHHHHHHHHhhccC--------CCCeEEEEEcCc
Q 022383 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQTVDTS--------SREVQALILSPT 110 (298)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~-~~~~~li~~pTG~GKT~~~~~~~~~~~~~~--------~~~~~~lil~p~ 110 (298)
|+++...++ .||+.++++|++++|.++ .++|++++||||+|||+++.+++++.+... ..+.++||++|+
T Consensus 66 Lp~~~~~~f--~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 66 LPKYAQAGF--EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp SCGGGSTTC--TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred cCHHHHHhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 455544433 279999999999999876 578999999999999999999999987531 235689999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccC--ccCCCccEEEechhhHhh
Q 022383 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEML 188 (298)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~--~~~~~l~~vViDE~h~~~ 188 (298)
++|++|+.+.+++.....|+++..++|+...... ...+++|+|+|||++..+++... ..++++++|||||+|.+.
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~ 220 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH 220 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC
Confidence 9999999999998888889999999998765432 12458999999999988887643 246899999999999886
Q ss_pred ccccHHHHHHHHH-------hCCCCccEEEEEeeCchhHHHHHHhcCCCC-EEEEecCCccCcCCceEEEEEecCcc--c
Q 022383 189 SRGFKDQIYDVYR-------YLPPDLQVVLISATLPHEILEMTTKFMTDP-VKILVKRDELTLEGIKQFFVAVEREE--W 258 (298)
Q Consensus 189 ~~~~~~~i~~i~~-------~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~--~ 258 (298)
+ ..+..++.++. ..+++.|+|++|||+++. +++..+...++ ..+.....+..+..+.+.++...... .
T Consensus 221 d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~ 298 (1724)
T 4f92_B 221 D-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY-EDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIK 298 (1724)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH-HHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHH
T ss_pred C-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH-HHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhh
Confidence 5 45555554443 346789999999999864 44444433222 11222223344445666555554432 1
Q ss_pred hHH----HHHHHHh-hCCCCcEEEEecchhhHHHHHHHHhhh
Q 022383 259 KFD----TLCDLYD-TLTITQAVIFCNTKRKIYYSVFYFWIR 295 (298)
Q Consensus 259 k~~----~l~~ll~-~~~~~k~lIf~~s~~~~~~l~~~L~~~ 295 (298)
+.. .+...+. ...++++||||+|++.|+.+|..|.+.
T Consensus 299 ~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~ 340 (1724)
T 4f92_B 299 RFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDM 340 (1724)
T ss_dssp HHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHH
Confidence 111 2222233 234569999999999999999988654
No 45
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=2.5e-29 Score=242.96 Aligned_cols=168 Identities=15% Similarity=0.206 Sum_probs=135.8
Q ss_pred HCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCC--CeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 022383 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDF 127 (298)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (298)
-+|+..|+++|.++++.+++|+++++++|||+|||++|++|++..+..... +.++|||+|+++|+.|+.+.++++...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 457889999999999999999999999999999999999999998876432 568999999999999999999999888
Q ss_pred CCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCc-cCCCccEEEechhhHhhccc-cHHHHHHHHHh---
Q 022383 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRG-FKDQIYDVYRY--- 202 (298)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~-~~~~l~~vViDE~h~~~~~~-~~~~i~~i~~~--- 202 (298)
.++++..++|+.........+..+++|+|+||++|...+..+.+ .+.++++|||||||++...+ +...+..++..
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~ 402 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 402 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHT
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhc
Confidence 88999999999877766667777899999999999999988766 78899999999999987664 33333333332
Q ss_pred -CCCCccEEEEEeeCc
Q 022383 203 -LPPDLQVVLISATLP 217 (298)
Q Consensus 203 -~~~~~~~v~~SAT~~ 217 (298)
..+..+++++|||+.
T Consensus 403 ~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 403 SASQLPQILGLTASVG 418 (797)
T ss_dssp TCCCCCEEEEEESCCC
T ss_pred cCCCCCeEEEEcCCcc
Confidence 145689999999995
No 46
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=5.5e-29 Score=253.59 Aligned_cols=249 Identities=14% Similarity=0.177 Sum_probs=182.1
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHhhc-CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHH
Q 022383 40 IKDDLLRGIYQYGFEKPSAIQQRAVMPIIK-GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (298)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~-~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (298)
|.+...+++...+|..++|+|+++++.+.. ++|++++||||||||++|.+|++..+...+ +.++||++|+++|++|++
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~~ 989 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQVY 989 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHHH
Confidence 556777888888899999999999999975 578999999999999999999999987643 448999999999999999
Q ss_pred HHHHH-hhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhcc--CccCCCccEEEechhhHhhccccHHH
Q 022383 119 KVILA-IGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--TLRTRAIKLLVLDESDEMLSRGFKDQ 195 (298)
Q Consensus 119 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~--~~~~~~l~~vViDE~h~~~~~~~~~~ 195 (298)
+.+++ +++..++++..++|+...+.. ...+++|+|+|||++..++++. ...++++++||+||+|.+.+. .+..
T Consensus 990 ~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~ 1065 (1724)
T 4f92_B 990 MDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPV 1065 (1724)
T ss_dssp HHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHH
T ss_pred HHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCcc
Confidence 99975 556678999999988664432 2234799999999998888763 334689999999999998764 4444
Q ss_pred HHHHH-------HhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccch------HHH
Q 022383 196 IYDVY-------RYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWK------FDT 262 (298)
Q Consensus 196 i~~i~-------~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k------~~~ 262 (298)
++.++ ...+++.|+|++|||+++. .++..+....+..+.....+..+..++..+...+..... ...
T Consensus 1066 le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~ 1144 (1724)
T 4f92_B 1066 LEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKP 1144 (1724)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcch
Confidence 44433 3456789999999999864 445544433333333333344444555555544433211 112
Q ss_pred HHHHHh-hCCCCcEEEEecchhhHHHHHHHHhh
Q 022383 263 LCDLYD-TLTITQAVIFCNTKRKIYYSVFYFWI 294 (298)
Q Consensus 263 l~~ll~-~~~~~k~lIf~~s~~~~~~l~~~L~~ 294 (298)
+...+. ....+++||||+|++.|+.+|..|..
T Consensus 1145 ~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~ 1177 (1724)
T 4f92_B 1145 VYHAITKHSPKKPVIVFVPSRKQTRLTAIDILT 1177 (1724)
T ss_dssp HHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHH
Confidence 222333 34567999999999999999988754
No 47
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.97 E-value=8e-30 Score=249.52 Aligned_cols=157 Identities=20% Similarity=0.287 Sum_probs=137.7
Q ss_pred HCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 022383 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (298)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (298)
.++|+ |+++|.++++.+.+|+++++++|||+|||++|++++...+.. +.+++|++|+++|+.|+++.+++... +
T Consensus 35 ~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~---g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN---MTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 34665 899999999999999999999999999999999988876544 56899999999999999999987643 5
Q ss_pred ceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccE
Q 022383 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~ 209 (298)
+++..++|+.... ...+|+|+||++|.+++......+.++++|||||+|++.++++...+..++..+++..|+
T Consensus 109 ~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~i 181 (997)
T 4a4z_A 109 VNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKF 181 (997)
T ss_dssp CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEE
T ss_pred CeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCCCE
Confidence 7888888887543 347999999999999998877778999999999999999999999999999999999999
Q ss_pred EEEEeeCchh
Q 022383 210 VLISATLPHE 219 (298)
Q Consensus 210 v~~SAT~~~~ 219 (298)
+++|||+++.
T Consensus 182 IlLSAT~~n~ 191 (997)
T 4a4z_A 182 ILLSATVPNT 191 (997)
T ss_dssp EEEECCCTTH
T ss_pred EEEcCCCCCh
Confidence 9999999765
No 48
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=1.6e-27 Score=217.46 Aligned_cols=160 Identities=18% Similarity=0.180 Sum_probs=133.0
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEE
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (298)
.|+++|.++++.+.++ ++++.+|||+|||++++.++...+.. .+.++||++|+++|+.|+.+.++++....+.++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~ 85 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVA 85 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEE
Confidence 5999999999999999 99999999999999999999887762 34589999999999999999999886544558888
Q ss_pred EEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEe
Q 022383 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SA 214 (298)
++|+........ ...+++|+|+||+.+...+....+.+.++++||+||||++........+...+....+..+++++||
T Consensus 86 ~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTa 164 (494)
T 1wp9_A 86 LTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTA 164 (494)
T ss_dssp ECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEES
T ss_pred eeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEec
Confidence 888877654432 3345799999999999998887788899999999999998765444445555555566889999999
Q ss_pred eCch
Q 022383 215 TLPH 218 (298)
Q Consensus 215 T~~~ 218 (298)
|+..
T Consensus 165 Tp~~ 168 (494)
T 1wp9_A 165 SPGS 168 (494)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 9974
No 49
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.96 E-value=3.6e-28 Score=237.66 Aligned_cols=168 Identities=15% Similarity=0.206 Sum_probs=134.1
Q ss_pred HCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCC--CeEEEEEcCcHHHHHHHHHHHHHhhcc
Q 022383 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGDF 127 (298)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~~~~~ 127 (298)
-.|+..|+++|.++++.+++|+++++++|||+|||++|++|++..+..... +.++|||+|+++|+.|+.+.++++...
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 346788999999999999999999999999999999999999998766432 568999999999999999999999887
Q ss_pred CCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCc-cCCCccEEEechhhHhhccc-cHHHHHHHHHh---
Q 022383 128 INIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTL-RTRAIKLLVLDESDEMLSRG-FKDQIYDVYRY--- 202 (298)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~-~~~~l~~vViDE~h~~~~~~-~~~~i~~i~~~--- 202 (298)
.++++..++|+.........+..+++|+|+||++|...+....+ .+.++++||+||||++...+ +...+..+...
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~ 402 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 402 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHT
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhc
Confidence 78999999999876665555556789999999999999988766 78899999999999987664 33333333332
Q ss_pred -CCCCccEEEEEeeCc
Q 022383 203 -LPPDLQVVLISATLP 217 (298)
Q Consensus 203 -~~~~~~~v~~SAT~~ 217 (298)
..+..+++++|||+.
T Consensus 403 ~~~~~~~~l~LSATp~ 418 (936)
T 4a2w_A 403 SASQLPQILGLTASVG 418 (936)
T ss_dssp TCSCCCEEEEEESCCC
T ss_pred cCCCcCeEEEecCCcc
Confidence 145689999999994
No 50
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=8.6e-28 Score=225.76 Aligned_cols=161 Identities=20% Similarity=0.248 Sum_probs=135.5
Q ss_pred HCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 022383 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (298)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (298)
.+|| .|++.|..++|.+++|+ +.+++||+|||++|.+|++..... ++.++||+||++||.|+.+.+..+...++
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~l~~~lg 152 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGKIFEFLG 152 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 5799 89999999999999999 999999999999999999843322 45799999999999999999999999999
Q ss_pred ceEEEEEcCCchHHHHHHhhcCCcEEEeChHHH-HHHHhcc------CccCCCccEEEechhhHhh-ccc----------
Q 022383 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML-SRG---------- 191 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~~~~~------~~~~~~l~~vViDE~h~~~-~~~---------- 191 (298)
+++..++||.+...+ ....+++|+|+||++| ..+++.+ .+.++.+.++|+||||.|+ +.+
T Consensus 153 l~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~ 230 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQA 230 (844)
T ss_dssp CCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEE
T ss_pred CeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCc
Confidence 999999999875443 3334689999999999 6666543 3567899999999999998 543
Q ss_pred -----cHHHHHHHHHhCC---------CCccEE-----------------EEEeeCch
Q 022383 192 -----FKDQIYDVYRYLP---------PDLQVV-----------------LISATLPH 218 (298)
Q Consensus 192 -----~~~~i~~i~~~~~---------~~~~~v-----------------~~SAT~~~ 218 (298)
+...+..+++.++ +..|+. ++|||.+.
T Consensus 231 ~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~ 288 (844)
T 1tf5_A 231 AKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVA 288 (844)
T ss_dssp ECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHH
T ss_pred ccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccch
Confidence 6788899999987 367777 88999763
No 51
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.95 E-value=6.4e-28 Score=226.13 Aligned_cols=147 Identities=16% Similarity=0.231 Sum_probs=113.5
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
+|. .|+++|..+++.++.|+ +..++||+|||++|++|++..... ++.++|++||++||.|+.+.+..+...+++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~~~lgl 144 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLFEFLGL 144 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHHHhcCC
Confidence 564 69999999999999998 999999999999999999865433 457999999999999999999999999999
Q ss_pred eEEEEEcCCchHHHHHHhhcCCcEEEeChHHH-HHHHhcc------CccCCCccEEEechhhHhh-ccc-----------
Q 022383 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML-SRG----------- 191 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~~~~~------~~~~~~l~~vViDE~h~~~-~~~----------- 191 (298)
++..++||.+... +....+++|+||||++| ..+++.+ ...++++.++|+||+|.|+ +.+
T Consensus 145 ~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 145 TVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp CEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred eEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 9999999987543 33444689999999999 6777654 2567999999999999998 432
Q ss_pred ----cHHHHHHHHHhCCC
Q 022383 192 ----FKDQIYDVYRYLPP 205 (298)
Q Consensus 192 ----~~~~i~~i~~~~~~ 205 (298)
+...+..+++.+++
T Consensus 223 ~~~~~y~~i~~iv~~L~~ 240 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIR 240 (853)
T ss_dssp ------------------
T ss_pred cchhHHHHHHHHHHhchh
Confidence 55677777777763
No 52
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.95 E-value=6.2e-26 Score=225.12 Aligned_cols=239 Identities=16% Similarity=0.138 Sum_probs=173.0
Q ss_pred CCCCHHHHHHHH-HCCCCCChHHHHHHHHHhhc----CC--cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCc
Q 022383 38 MGIKDDLLRGIY-QYGFEKPSAIQQRAVMPIIK----GR--DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (298)
Q Consensus 38 l~l~~~i~~~l~-~~~~~~~~~~Q~~~~~~~~~----~~--~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (298)
++.+....+.+. .++|+ ++++|.++++.+.+ |+ ++++++|||+|||++++.+++..+.. +.+++|++||
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~---g~~vlvlvPt 661 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN---HKQVAVLVPT 661 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT---TCEEEEECSS
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh---CCeEEEEech
Confidence 345666666664 46776 79999999999875 66 99999999999999999888876654 5589999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHH---HHhh-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhH
Q 022383 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDI---RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDE 186 (298)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~ 186 (298)
++|+.|+.+.+++.....++++..+++.....+.. ..+. +.++|+|+||+.+. ..+.++++++|||||+|+
T Consensus 662 ~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~ 736 (1151)
T 2eyq_A 662 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHR 736 (1151)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGG
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHh
Confidence 99999999999988777788888888876654432 3333 35899999997653 346788999999999999
Q ss_pred hhccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHH
Q 022383 187 MLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 266 (298)
Q Consensus 187 ~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l 266 (298)
+. ......++.++.+.+++++|||+.+....+....+.++..+... ......+...+..... ......+
T Consensus 737 ~g-----~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~--~~~r~~i~~~~~~~~~----~~i~~~i 805 (1151)
T 2eyq_A 737 FG-----VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP--PARRLAVKTFVREYDS----MVVREAI 805 (1151)
T ss_dssp SC-----HHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC--CCBCBCEEEEEEECCH----HHHHHHH
T ss_pred cC-----hHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC--CCCccccEEEEecCCH----HHHHHHH
Confidence 52 23345556666788999999999777666655555444333221 1222334444443322 2222233
Q ss_pred Hh-hCCCCcEEEEecchhhHHHHHHHHhhhc
Q 022383 267 YD-TLTITQAVIFCNTKRKIYYSVFYFWIRW 296 (298)
Q Consensus 267 l~-~~~~~k~lIf~~s~~~~~~l~~~L~~~~ 296 (298)
+. ...+++++||||+++.++.+++.|++..
T Consensus 806 l~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~ 836 (1151)
T 2eyq_A 806 LREILRGGQVYYLYNDVENIQKAAERLAELV 836 (1151)
T ss_dssp HHHHTTTCEEEEECCCSSCHHHHHHHHHHHC
T ss_pred HHHHhcCCeEEEEECCHHHHHHHHHHHHHhC
Confidence 32 2345799999999999999999998874
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.95 E-value=6e-26 Score=213.24 Aligned_cols=161 Identities=17% Similarity=0.230 Sum_probs=136.3
Q ss_pred HCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 022383 50 QYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (298)
Q Consensus 50 ~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (298)
.+|+ .|++.|..+++.+.+|+ +.+++||+|||++|.+|++..... +..++||+||++||.|..+.+..+...++
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~~v~VvTpTreLA~Qdae~m~~l~~~lG 180 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---GNGVHIVTVNDYLAKRDSEWMGRVHRFLG 180 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---TSCEEEEESSHHHHHHHHHHHHHHHHHTT
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHHHHHhhcC
Confidence 3688 79999999999999998 999999999999999999754333 34799999999999999999999999999
Q ss_pred ceEEEEEcCCchHHHHHHhhcCCcEEEeChHHH-HHHHhcc------CccCCCccEEEechhhHhh-cc-----------
Q 022383 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTRAIKLLVLDESDEML-SR----------- 190 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~~~~~------~~~~~~l~~vViDE~h~~~-~~----------- 190 (298)
+++..++||.+.... ....+++|+++||++| ..+++.+ ...++.+.++|+||+|.|+ +.
T Consensus 181 Lsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~ 258 (922)
T 1nkt_A 181 LQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPA 258 (922)
T ss_dssp CCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEC
T ss_pred CeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCC
Confidence 999999999875433 3334589999999999 6777653 4667899999999999998 32
Q ss_pred ----ccHHHHHHHHHhCC---------CCccEE-----------------EEEeeCch
Q 022383 191 ----GFKDQIYDVYRYLP---------PDLQVV-----------------LISATLPH 218 (298)
Q Consensus 191 ----~~~~~i~~i~~~~~---------~~~~~v-----------------~~SAT~~~ 218 (298)
++...+..+++.++ +..|+. ++|||.+.
T Consensus 259 ~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~ 316 (922)
T 1nkt_A 259 DGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSP 316 (922)
T ss_dssp CCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCC
T ss_pred CcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchh
Confidence 47788999999997 678888 88999764
No 54
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.94 E-value=1.2e-27 Score=228.48 Aligned_cols=163 Identities=13% Similarity=0.179 Sum_probs=126.9
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC---CCCeEEEEEcCcHHHHHHH-HHHHHHhhccCCc
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTRELATQT-EKVILAIGDFINI 130 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~---~~~~~~lil~p~~~l~~q~-~~~~~~~~~~~~~ 130 (298)
.|+++|.++++.+++|+++++.+|||+|||++|++|++..+... ..+.++||++|+++|+.|+ .+.+++++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 59999999999999999999999999999999999999876542 1225899999999999999 9999998765 48
Q ss_pred eEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHH------hccCccCCCccEEEechhhHhhccc-cHHHHHHHHHh-
Q 022383 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMI------KRKTLRTRAIKLLVLDESDEMLSRG-FKDQIYDVYRY- 202 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~------~~~~~~~~~l~~vViDE~h~~~~~~-~~~~i~~i~~~- 202 (298)
++..++|+.........+..+++|+|+||++|...+ ....+.+.++++|||||||++...+ +...+...+..
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 889999987766655666678999999999999988 4455778899999999999985543 33333222221
Q ss_pred ---C---------CCCccEEEEEeeCch
Q 022383 203 ---L---------PPDLQVVLISATLPH 218 (298)
Q Consensus 203 ---~---------~~~~~~v~~SAT~~~ 218 (298)
. .+.++++++|||+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~ 193 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGV 193 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCC
T ss_pred hcccccccccccCCCCCEEEEecccccc
Confidence 1 156799999999986
No 55
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.94 E-value=3.2e-26 Score=218.06 Aligned_cols=233 Identities=17% Similarity=0.176 Sum_probs=162.5
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHhhcC------CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHH
Q 022383 42 DDLLRGIYQYGFEKPSAIQQRAVMPIIKG------RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELAT 115 (298)
Q Consensus 42 ~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~------~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~ 115 (298)
+.+...+..++| .|+++|.++++.+.++ .++++++|||+|||++|++|++..+.. +.+++|++|+++|+.
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~ 431 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAI 431 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHH
Confidence 456666778999 7999999999998865 599999999999999999999998765 468999999999999
Q ss_pred HHHHHHHHhhccCCceEEEEEcCCchHHHH---HHhh-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccc
Q 022383 116 QTEKVILAIGDFINIQAHACVGGKSVGEDI---RKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG 191 (298)
Q Consensus 116 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~ 191 (298)
|+.+.++++....++++..++|+....+.. ..+. +.++|+|+||+.+.. ...+.++++||+||+|++....
T Consensus 432 Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~q 506 (780)
T 1gm5_A 432 QHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVKQ 506 (780)
T ss_dssp HHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC----
T ss_pred HHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHHH
Confidence 999999999888889999999998766543 2333 358999999987743 4668899999999999863221
Q ss_pred cHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHh-h-
Q 022383 192 FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD-T- 269 (298)
Q Consensus 192 ~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~-~- 269 (298)
+..+......+++++||||+.+....... .++...............+...+. ... +...+...+. .
T Consensus 507 -----r~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~~r~~i~~~~~---~~~-~~~~l~~~i~~~l 575 (780)
T 1gm5_A 507 -----REALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPPGRKEVQTMLV---PMD-RVNEVYEFVRQEV 575 (780)
T ss_dssp ------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCSSCCCCEECCC---CSS-THHHHHHHHHHHT
T ss_pred -----HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCCCCcceEEEEe---ccc-hHHHHHHHHHHHH
Confidence 12222333578999999998765444332 222211111111111122332222 222 3333444443 2
Q ss_pred CCCCcEEEEecchh--------hHHHHHHHHhh
Q 022383 270 LTITQAVIFCNTKR--------KIYYSVFYFWI 294 (298)
Q Consensus 270 ~~~~k~lIf~~s~~--------~~~~l~~~L~~ 294 (298)
..+.+++|||++++ .++.+++.|++
T Consensus 576 ~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~ 608 (780)
T 1gm5_A 576 MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSK 608 (780)
T ss_dssp TTSCCBCCBCCCC--------CHHHHHHHSGGG
T ss_pred hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHh
Confidence 34569999999764 47788888876
No 56
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.94 E-value=1.3e-26 Score=189.74 Aligned_cols=164 Identities=14% Similarity=0.157 Sum_probs=120.2
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccC---CCCeEEEEEcCcHHHHHH-HHHHHHHhhc
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTRELATQ-TEKVILAIGD 126 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~---~~~~~~lil~p~~~l~~q-~~~~~~~~~~ 126 (298)
.+...|+++|.++++.+.+++++++.+|||+|||++++.++...+... ..+.+++|++|+++|+.| +.+.++++..
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 345579999999999999999999999999999999999988766431 235589999999999999 7788888765
Q ss_pred cCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccC------ccCCCccEEEechhhHhhccccHHHH-HHH
Q 022383 127 FINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKT------LRTRAIKLLVLDESDEMLSRGFKDQI-YDV 199 (298)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~------~~~~~l~~vViDE~h~~~~~~~~~~i-~~i 199 (298)
. ++++..+.|+.........+..+++|+|+||+++...+.... ..+.++++||+||+|++.+.++...+ ..+
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~ 187 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHY 187 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHHH
Confidence 4 678888888766554444444568999999999999887643 56788999999999999876544433 333
Q ss_pred HHhC-------------CCCccEEEEEee
Q 022383 200 YRYL-------------PPDLQVVLISAT 215 (298)
Q Consensus 200 ~~~~-------------~~~~~~v~~SAT 215 (298)
+... .+..+++++|||
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 188 LMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHhcccccccccccCCCCcceEEEeecC
Confidence 2221 157899999998
No 57
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.93 E-value=1.4e-26 Score=213.36 Aligned_cols=154 Identities=21% Similarity=0.197 Sum_probs=128.5
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEE
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (298)
.|+++|.++++.+.+++++++++|||+|||++++.++...+... ..++|||+|+++|+.|+.+.++++....+..+..
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~ 190 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEE
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEE
Confidence 69999999999999999999999999999999999988877543 3489999999999999999999987666678888
Q ss_pred EEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEe
Q 022383 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SA 214 (298)
++|+.....+ ...+.+|+|+||+.+.. .....+.++++|||||+|++.. ..+..+++.+++..+++++||
T Consensus 191 ~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l~lSA 260 (510)
T 2oca_A 191 IGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (510)
T ss_dssp CGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEEEEES
T ss_pred EecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEEEEEe
Confidence 8887665443 45668999999996543 3345567899999999999854 456778888878889999999
Q ss_pred eCchhH
Q 022383 215 TLPHEI 220 (298)
Q Consensus 215 T~~~~~ 220 (298)
|+++..
T Consensus 261 Tp~~~~ 266 (510)
T 2oca_A 261 SLRDGK 266 (510)
T ss_dssp CGGGCS
T ss_pred CCCCCc
Confidence 997653
No 58
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.92 E-value=7e-26 Score=205.33 Aligned_cols=211 Identities=14% Similarity=0.083 Sum_probs=142.6
Q ss_pred CCCCChHHHHHHHHHhhcCCcE-EEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 52 GFEKPSAIQQRAVMPIIKGRDV-IAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~-li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
|+.+++|.|+ ++|.+++++++ ++++|||||||++|++|++...... +.+++|++|+++|+.|+.+.++ +.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLR--RLRTLILAPTRVVAAEMEEALR------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhc--CCcEEEECCCHHHHHHHHHHhc------Cc
Confidence 6788999985 79999988877 9999999999999999998876553 5689999999999999999774 23
Q ss_pred eEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHH-hCCCCccE
Q 022383 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYR-YLPPDLQV 209 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~-~~~~~~~~ 209 (298)
.+....+.... ....+..+.++|++.+.+.+... ..+.++++||+||+|++ +..+...+..+.. ..+++.|+
T Consensus 72 ~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 72 PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceE
Confidence 33221111110 11234578899999988777543 55789999999999987 3333333332322 23457999
Q ss_pred EEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHH
Q 022383 210 VLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSV 289 (298)
Q Consensus 210 v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~ 289 (298)
+++|||++.....+ +..++..+...... +.. .+..+..++... .+++||||++++.|+.++
T Consensus 145 i~~SAT~~~~~~~~---~~~~~~~~~~~~~~-------------p~~--~~~~~~~~l~~~-~~~~lVF~~s~~~a~~l~ 205 (451)
T 2jlq_A 145 IFMTATPPGSTDPF---PQSNSPIEDIEREI-------------PER--SWNTGFDWITDY-QGKTVWFVPSIKAGNDIA 205 (451)
T ss_dssp EEECSSCTTCCCSS---CCCSSCEEEEECCC-------------CSS--CCSSSCHHHHHC-CSCEEEECSSHHHHHHHH
T ss_pred EEEccCCCccchhh---hcCCCceEecCccC-------------Cch--hhHHHHHHHHhC-CCCEEEEcCCHHHHHHHH
Confidence 99999998754322 22333333322100 000 001112233333 469999999999999999
Q ss_pred HHHhhhcC
Q 022383 290 FYFWIRWI 297 (298)
Q Consensus 290 ~~L~~~~~ 297 (298)
+.|+..|+
T Consensus 206 ~~L~~~g~ 213 (451)
T 2jlq_A 206 NCLRKSGK 213 (451)
T ss_dssp HHHHTTTC
T ss_pred HHHHHcCC
Confidence 99988764
No 59
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.92 E-value=9.2e-25 Score=199.40 Aligned_cols=136 Identities=15% Similarity=0.136 Sum_probs=113.1
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCce-EE
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ-AH 133 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~-~~ 133 (298)
.|+++|.++++.+.+++++++++|||+|||++|+.++... +.++||++|+++|+.|+.+.++++ +++ +.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~ 162 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC----CCcceE
Confidence 5999999999999999999999999999999999888764 448999999999999999988773 677 77
Q ss_pred EEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
.++|+... ..+|+|+|++.+......- ..++++||+||+|++....|.. +.+.++ ..+++++|
T Consensus 163 ~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~~~~~----~~~~~~-~~~~l~lS 225 (472)
T 2fwr_A 163 EFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APFRLGLT 225 (472)
T ss_dssp EBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTSTTTHH----HHHTCC-CSEEEEEE
T ss_pred EECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCChHHHH----HHHhcC-CCeEEEEe
Confidence 77777543 4699999999988765421 2468999999999998777654 445553 67899999
Q ss_pred eeCc
Q 022383 214 ATLP 217 (298)
Q Consensus 214 AT~~ 217 (298)
||+.
T Consensus 226 ATp~ 229 (472)
T 2fwr_A 226 ATFE 229 (472)
T ss_dssp SCCC
T ss_pred cCcc
Confidence 9996
No 60
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.92 E-value=1.4e-25 Score=208.60 Aligned_cols=202 Identities=16% Similarity=0.125 Sum_probs=145.9
Q ss_pred ChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE
Q 022383 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC 135 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~ 135 (298)
++++|..+++.+.++++++++||||+|||.+|.+++++. +.+++|++|+++|+.|+.+.+.+.. +..+...
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~ 288 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNIR 288 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEEE
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeEE
Confidence 556677777777788999999999999999999998873 4589999999999999998776543 4455566
Q ss_pred EcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCcc--EEEEE
Q 022383 136 VGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQ--VVLIS 213 (298)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~--~v~~S 213 (298)
.|+.. ...+.+|+|+||++| +....+.++++++||+||+|++ +.++...+..+++.++...+ ++++|
T Consensus 289 vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l-~~~~~~~l~~Il~~l~~~~~~llil~S 357 (666)
T 3o8b_A 289 TGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAGARLVVLAT 357 (666)
T ss_dssp CSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC-SHHHHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred ECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc-CccHHHHHHHHHHhhhhcCCceEEEEC
Confidence 66644 345689999999997 4566778889999999999764 56778888889999887666 77889
Q ss_pred eeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHh
Q 022383 214 ATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFW 293 (298)
Q Consensus 214 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~ 293 (298)
||+++.+. ...+....+..... ..+ . ...... . ++....+++||||+++++++.+++.|+
T Consensus 358 AT~~~~i~------~~~p~i~~v~~~~~--~~i-~---~~~~~~-~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~ 417 (666)
T 3o8b_A 358 ATPPGSVT------VPHPNIEEVALSNT--GEI-P---FYGKAI-P-------IEAIRGGRHLIFCHSKKKCDELAAKLS 417 (666)
T ss_dssp SSCTTCCC------CCCTTEEEEECBSC--SSE-E---ETTEEE-C-------GGGSSSSEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCcccc------cCCcceEEEeeccc--chh-H---HHHhhh-h-------hhhccCCcEEEEeCCHHHHHHHHHHHH
Confidence 99987421 11221111110000 000 0 001000 1 223356899999999999999999999
Q ss_pred hhcC
Q 022383 294 IRWI 297 (298)
Q Consensus 294 ~~~~ 297 (298)
+.|+
T Consensus 418 ~~g~ 421 (666)
T 3o8b_A 418 GLGI 421 (666)
T ss_dssp TTTC
T ss_pred hCCC
Confidence 8765
No 61
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.92 E-value=2.4e-26 Score=214.83 Aligned_cols=225 Identities=15% Similarity=0.073 Sum_probs=151.9
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHH
Q 022383 38 MGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQT 117 (298)
Q Consensus 38 l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~ 117 (298)
+++++.+.+++.+. ...++|.|+.+++.+.+|+|+++++|||||||++|++|++..+... +.++||++||++|+.|+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~--~~~vLvl~PtreLa~Qi 231 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKR--RLRTLILAPTRVVAAEM 231 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhC--CCeEEEEcChHHHHHHH
Confidence 55666666666553 4778888888899999999999999999999999999999887653 56899999999999999
Q ss_pred HHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHH
Q 022383 118 EKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIY 197 (298)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~ 197 (298)
.+.++. ..+. +.+.... .....+..+.++|.+.+...+... ..++++++||+||||++ +.++...+.
T Consensus 232 ~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~ 298 (618)
T 2whx_A 232 EEALRG------LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARG 298 (618)
T ss_dssp HHHTTT------SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHHHHHHH
T ss_pred HHHhcC------Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccHHHHHH
Confidence 987752 2232 2221100 001123356678888777655543 45789999999999998 566777777
Q ss_pred HHHHhCC-CCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEE
Q 022383 198 DVYRYLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAV 276 (298)
Q Consensus 198 ~i~~~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~l 276 (298)
.+.+.++ ++.|++++|||++.....+.. .++..+.+.... +.. +...+...+.. ..+++|
T Consensus 299 ~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~-------------~~~--~~~~ll~~l~~-~~~~~L 359 (618)
T 2whx_A 299 YISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI-------------PER--SWNTGFDWITD-YQGKTV 359 (618)
T ss_dssp HHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC-------------CSS--CCSSSCHHHHH-CCSCEE
T ss_pred HHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC-------------CHH--HHHHHHHHHHh-CCCCEE
Confidence 7777764 679999999999876443221 133333322110 111 11112222333 257999
Q ss_pred EEecchhhHHHHHHHHhhhcC
Q 022383 277 IFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 277 If~~s~~~~~~l~~~L~~~~~ 297 (298)
|||+|++.|+.+++.|+..|+
T Consensus 360 VF~~s~~~a~~l~~~L~~~g~ 380 (618)
T 2whx_A 360 WFVPSIKAGNDIANCLRKSGK 380 (618)
T ss_dssp EECSSHHHHHHHHHHHHHTTC
T ss_pred EEECChhHHHHHHHHHHHcCC
Confidence 999999999999999998764
No 62
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.92 E-value=1.6e-23 Score=200.36 Aligned_cols=248 Identities=15% Similarity=0.175 Sum_probs=167.0
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhh-cCCcEEEEcCCCCchHHHHHHHHHH--hhccCCCCeEEEE
Q 022383 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII-KGRDVIAQAQSGTGKTSMIALTVCQ--TVDTSSREVQALI 106 (298)
Q Consensus 30 ~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~-~~~~~li~~pTG~GKT~~~~~~~~~--~~~~~~~~~~~li 106 (298)
.++.+|+++++++.+.+.+.+.+ ..|.+.|+++++.++ .+++++++||||+|||+. +|++. .......+.++++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtl--lp~ll~~~~~~~~~g~~ilv 145 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQ--IPQFVLFDEMPHLENTQVAC 145 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHH--HHHHHHHHHCGGGGTCEEEE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHH--HHHHHHHhccccCCCceEEe
Confidence 45678999999999999999988 679999999998876 567899999999999983 44432 2111112457999
Q ss_pred EcCcHHHHHHHHHHHHHhh-ccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhh
Q 022383 107 LSPTRELATQTEKVILAIG-DFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD 185 (298)
Q Consensus 107 l~p~~~l~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h 185 (298)
++|+++|+.|+.+.+.... ...+..+........ ....+.+|+++||+++.+.+... ..+.++++||+||+|
T Consensus 146 l~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah 218 (773)
T 2xau_A 146 TQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILDEAH 218 (773)
T ss_dssp EESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEECSGG
T ss_pred cCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEecCcc
Confidence 9999999999998775432 222222322111111 11245789999999999877654 458899999999999
Q ss_pred H-hhccc-cHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHH--
Q 022383 186 E-MLSRG-FKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFD-- 261 (298)
Q Consensus 186 ~-~~~~~-~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~-- 261 (298)
. .++.. ....+..+.... +..|++++|||++.. .+. .++.++..+.+... ...+.+.+...+..+....
T Consensus 219 ~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~~--~l~-~~~~~~~vi~v~gr---~~pv~~~~~~~~~~~~~~~~l 291 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDAE--KFQ-RYFNDAPLLAVPGR---TYPVELYYTPEFQRDYLDSAI 291 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCCH--HHH-HHTTSCCEEECCCC---CCCEEEECCSSCCSCHHHHHH
T ss_pred ccccchHHHHHHHHHHHHhC-CCceEEEEeccccHH--HHH-HHhcCCCcccccCc---ccceEEEEecCCchhHHHHHH
Confidence 6 33332 334455555544 478999999999643 333 34444434443322 2345665554444442222
Q ss_pred -HHHHHHhhCCCCcEEEEecchhhHHHHHHHHhh
Q 022383 262 -TLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWI 294 (298)
Q Consensus 262 -~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~ 294 (298)
.+..+......+++||||+++++++.+++.|++
T Consensus 292 ~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~ 325 (773)
T 2xau_A 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKISL 325 (773)
T ss_dssp HHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHH
Confidence 233333444678999999999999999999975
No 63
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.91 E-value=9.5e-24 Score=175.19 Aligned_cols=169 Identities=19% Similarity=0.242 Sum_probs=125.4
Q ss_pred CCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCC--CeEEEEEcCcHHHHHHHHHHHHHhhc-cC
Q 022383 52 GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSR--EVQALILSPTRELATQTEKVILAIGD-FI 128 (298)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~--~~~~lil~p~~~l~~q~~~~~~~~~~-~~ 128 (298)
+...++++|.++++.+.+|++++++||||+|||.++..+++........ ..++++++|+++++.|+.+.+..... ..
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 3345899999999999999999999999999999998888886654332 45899999999999999988865432 22
Q ss_pred CceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHh-hccccH-HHHHHHHHhCCCC
Q 022383 129 NIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM-LSRGFK-DQIYDVYRYLPPD 206 (298)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~-~~~~~~-~~i~~i~~~~~~~ 206 (298)
+..+......... ....+++|+|+||+++.+++.. .++++++||+||+|.+ .+.++. ..++.+.... ++
T Consensus 138 ~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~-~~ 208 (235)
T 3llm_A 138 GKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY-PE 208 (235)
T ss_dssp TSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC-TT
T ss_pred CceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC-CC
Confidence 3333332211110 0113478999999999998876 4789999999999985 555555 4666666666 47
Q ss_pred ccEEEEEeeCchhHHHHHHhcCCCC
Q 022383 207 LQVVLISATLPHEILEMTTKFMTDP 231 (298)
Q Consensus 207 ~~~v~~SAT~~~~~~~~~~~~~~~~ 231 (298)
.|++++|||++... +...+...|
T Consensus 209 ~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 209 VRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp SEEEEEECSSCCHH--HHHHTTSCC
T ss_pred CeEEEEecCCCHHH--HHHHcCCCC
Confidence 89999999999765 444444444
No 64
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.90 E-value=4.2e-24 Score=182.15 Aligned_cols=154 Identities=21% Similarity=0.198 Sum_probs=124.0
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEE
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (298)
.|+++|.++++.++++++.++++|||+|||.+++.++...+... ..++||++|+++|+.|+.+.++++....+..+..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~ 190 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKK 190 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhcccccceEEE
Confidence 69999999999999888899999999999999988877766542 3389999999999999999999987666667777
Q ss_pred EEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEe
Q 022383 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SA 214 (298)
+.++..... ....+.+|+|+||+.+... ....+.++++||+||||++.. ..+..+++.+.+..+++++||
T Consensus 191 ~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~lSA 260 (282)
T 1rif_A 191 IGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFGLSG 260 (282)
T ss_dssp CSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEEECS
T ss_pred EeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEEEeC
Confidence 777654332 2224579999999876532 234467889999999999853 467788888877899999999
Q ss_pred eCchhH
Q 022383 215 TLPHEI 220 (298)
Q Consensus 215 T~~~~~ 220 (298)
|+++..
T Consensus 261 Tp~~~~ 266 (282)
T 1rif_A 261 SLRDGK 266 (282)
T ss_dssp SCCTTS
T ss_pred CCCCcc
Confidence 997653
No 65
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.90 E-value=1.7e-23 Score=196.10 Aligned_cols=151 Identities=20% Similarity=0.266 Sum_probs=92.1
Q ss_pred CChHHHHHHHHHhhc----C-CcEEEEcCCCCchHHHHHHHHHHhhccC------CCCeEEEEEcCcHHHHHHHH-HHHH
Q 022383 55 KPSAIQQRAVMPIIK----G-RDVIAQAQSGTGKTSMIALTVCQTVDTS------SREVQALILSPTRELATQTE-KVIL 122 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~----~-~~~li~~pTG~GKT~~~~~~~~~~~~~~------~~~~~~lil~p~~~l~~q~~-~~~~ 122 (298)
.|+++|.++++.+.+ | +++++++|||+|||++++..+...+... ..++++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999998875 4 6799999999999999665444433321 14679999999999999999 7666
Q ss_pred HhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhc----cCccCCCccEEEechhhHhhccccHHHHHH
Q 022383 123 AIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKR----KTLRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (298)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~----~~~~~~~l~~vViDE~h~~~~~~~~~~i~~ 198 (298)
.++ ..+..+.++ ....+.+|+|+||++|...... ..+...++++||+||||++.... ...+..
T Consensus 258 ~~~----~~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 258 PFG----DARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred hcc----hhhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 543 233333322 2234679999999999887642 34556789999999999986542 245567
Q ss_pred HHHhCCCCccEEEEEeeCchh
Q 022383 199 VYRYLPPDLQVVLISATLPHE 219 (298)
Q Consensus 199 i~~~~~~~~~~v~~SAT~~~~ 219 (298)
+++.++ ..+++++|||+...
T Consensus 325 il~~~~-~~~~l~lTATP~~~ 344 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLRE 344 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCT
T ss_pred HHHhCC-cceEEEeccccccc
Confidence 777776 47899999998743
No 66
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.90 E-value=2e-25 Score=201.52 Aligned_cols=190 Identities=14% Similarity=0.123 Sum_probs=123.0
Q ss_pred HhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHH
Q 022383 66 PIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDI 145 (298)
Q Consensus 66 ~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (298)
.+.+|+|+++++|||||||++|++|++..+... +++++|++||++|+.|+.+.++.+ .+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~----- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS----- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC-----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce-----
Confidence 467899999999999999999999999977653 568999999999999999987643 2221111100
Q ss_pred HHhhcCCcEEEeChHHHHHHHhc--------cCccCCCccEEEechhhHhhccccHHHHHHHHHhC-CCCccEEEEEeeC
Q 022383 146 RKLEHGVHVVSGTPGRVCDMIKR--------KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISATL 216 (298)
Q Consensus 146 ~~~~~~~~ilV~Tp~~l~~~~~~--------~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~-~~~~~~v~~SAT~ 216 (298)
.|+||+++..++.. ....++++++||+||+|.+ +.++...+..+.+.. +...|+++||||+
T Consensus 71 ---------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~ 140 (440)
T 1yks_A 71 ---------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATP 140 (440)
T ss_dssp ---------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSC
T ss_pred ---------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCC
Confidence 26666655432222 2244789999999999998 333433333333333 3579999999999
Q ss_pred chhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhc
Q 022383 217 PHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRW 296 (298)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~ 296 (298)
++.+..+... ..+..... ..++... +...+ ..+... ++++||||++++.|+.+++.|+..|
T Consensus 141 ~~~~~~~~~~--~~~~~~~~--------------~~~~~~~-~~~~~-~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~~~ 201 (440)
T 1yks_A 141 PGTSDEFPHS--NGEIEDVQ--------------TDIPSEP-WNTGH-DWILAD-KRPTAWFLPSIRAANVMAASLRKAG 201 (440)
T ss_dssp TTCCCSSCCC--SSCEEEEE--------------CCCCSSC-CSSSC-HHHHHC-CSCEEEECSCHHHHHHHHHHHHHTT
T ss_pred Cchhhhhhhc--CCCeeEee--------------eccChHH-HHHHH-HHHHhc-CCCEEEEeCCHHHHHHHHHHHHHcC
Confidence 8764432211 11111111 1111111 11112 222222 5799999999999999999998876
Q ss_pred C
Q 022383 297 I 297 (298)
Q Consensus 297 ~ 297 (298)
+
T Consensus 202 ~ 202 (440)
T 1yks_A 202 K 202 (440)
T ss_dssp C
T ss_pred C
Confidence 4
No 67
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.90 E-value=3.1e-23 Score=186.84 Aligned_cols=195 Identities=12% Similarity=0.080 Sum_probs=125.5
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (298)
+|+++++++|||+|||++|++|++..+... +.+++|++||++|+.|+.+.++ ++.+....++... .-
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~ 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ER 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cC
Confidence 478999999999999999999999665543 5689999999999999998765 3445444443211 11
Q ss_pred hcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhC-CCCccEEEEEeeCchhHHHHHHhc
Q 022383 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL-PPDLQVVLISATLPHEILEMTTKF 227 (298)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~-~~~~~~v~~SAT~~~~~~~~~~~~ 227 (298)
..+..+.+.|.+.+.+.+.. ...++++++|||||+|++ ...+......+.... ++.+|++++|||+++.+..+...
T Consensus 68 ~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~~- 144 (431)
T 2v6i_A 68 TGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPPS- 144 (431)
T ss_dssp -CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCCC-
T ss_pred CCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcCC-
Confidence 12345677788888766555 556889999999999997 333333333333332 46799999999998753221110
Q ss_pred CCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 228 MTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
..|...... ..+.. +...+..++... .+++||||+++++|+.+++.|+..++
T Consensus 145 -~~~i~~~~~--------------~~~~~--~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~ 196 (431)
T 2v6i_A 145 -NSPIIDEET--------------RIPDK--AWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGK 196 (431)
T ss_dssp -SSCCEEEEC--------------CCCSS--CCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTC
T ss_pred -CCceeeccc--------------cCCHH--HHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCC
Confidence 111111100 00111 112223334443 46999999999999999999987653
No 68
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.89 E-value=1.3e-24 Score=204.44 Aligned_cols=216 Identities=15% Similarity=0.133 Sum_probs=134.6
Q ss_pred HHHHCCCC-----CChHHHH-----HHHHHhh------cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCc
Q 022383 47 GIYQYGFE-----KPSAIQQ-----RAVMPII------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (298)
Q Consensus 47 ~l~~~~~~-----~~~~~Q~-----~~~~~~~------~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (298)
++...||. .|++.|+ ++++.++ +|+|+++++|||+|||++|++|++..+... +.+++|++||
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~~~lilaPT 279 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RLRTAVLAPT 279 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TCCEEEEESS
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCcEEEEccH
Confidence 44556666 8999999 9999888 899999999999999999999999886553 5689999999
Q ss_pred HHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh-cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhc
Q 022383 111 RELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (298)
Q Consensus 111 ~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~ 189 (298)
++|+.|+.+.++.+ ++. ...+.. .... .+.-+-..+.+.+.+.+.. ...++++++||+||+|++ +
T Consensus 280 r~La~Q~~~~l~~~----~i~--~~~~~l------~~v~tp~~ll~~l~~~~l~~~l~~-~~~l~~l~lvViDEaH~~-~ 345 (673)
T 2wv9_A 280 RVVAAEMAEALRGL----PVR--YLTPAV------QREHSGNEIVDVMCHATLTHRLMS-PLRVPNYNLFVMDEAHFT-D 345 (673)
T ss_dssp HHHHHHHHHHTTTS----CCE--ECCC---------CCCCSCCCEEEEEHHHHHHHHHS-SSCCCCCSEEEEESTTCC-C
T ss_pred HHHHHHHHHHHhcC----Cee--eecccc------cccCCHHHHHHHHHhhhhHHHHhc-ccccccceEEEEeCCccc-C
Confidence 99999999987644 221 100000 0000 1112233344444333333 256889999999999998 2
Q ss_pred cccHHHHHHHHHhCC-CCccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHh
Q 022383 190 RGFKDQIYDVYRYLP-PDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 268 (298)
Q Consensus 190 ~~~~~~i~~i~~~~~-~~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~ 268 (298)
..+...+..+....+ ...|+++||||+++.+..+... ..|...... ..+... ....+. .+.
T Consensus 346 ~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~~v~~--------------~~~~~~-~~~~l~-~l~ 407 (673)
T 2wv9_A 346 PASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVHDVSS--------------EIPDRA-WSSGFE-WIT 407 (673)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC--------------CCCSSC-CSSCCH-HHH
T ss_pred ccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceEEEee--------------ecCHHH-HHHHHH-HHH
Confidence 222233333333332 5799999999998764322111 112111110 011111 111122 222
Q ss_pred hCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 269 TLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 269 ~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
. ..+++||||+++++++.+++.|+..++
T Consensus 408 ~-~~~~~lVF~~s~~~~e~la~~L~~~g~ 435 (673)
T 2wv9_A 408 D-YAGKTVWFVASVKMSNEIAQCLQRAGK 435 (673)
T ss_dssp S-CCSCEEEECSSHHHHHHHHHHHHTTTC
T ss_pred h-CCCCEEEEECCHHHHHHHHHHHHhCCC
Confidence 2 457999999999999999999988754
No 69
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.88 E-value=8.9e-23 Score=185.27 Aligned_cols=196 Identities=13% Similarity=0.139 Sum_probs=125.9
Q ss_pred HHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHH
Q 022383 64 VMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGE 143 (298)
Q Consensus 64 ~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (298)
...+.+++++++++|||+|||++|++|++..+... +.++||++|+++|+.|+.+.++ +..+....+....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~-- 84 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQR-- 84 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TCCEEEEECSHHHHHHHHHHTT------TSCEEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEECchHHHHHHHHHHhc------CceEeEEeccccc--
Confidence 34466789999999999999999999999877643 5689999999999999999876 2222221111110
Q ss_pred HHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHh-----hccccHHHHHHHHHhCCCCccEEEEEeeCch
Q 022383 144 DIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM-----LSRGFKDQIYDVYRYLPPDLQVVLISATLPH 218 (298)
Q Consensus 144 ~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~-----~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~ 218 (298)
.-..+..+.++|.+.+...+... ..++++++|||||+|.+ ...++..... .++..|++++|||++.
T Consensus 85 ---~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SAT~~~ 155 (459)
T 2z83_A 85 ---EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTATPPG 155 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECSSCTT
T ss_pred ---CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEcCCCc
Confidence 01233457778888877655543 56789999999999983 3333322211 1357999999999987
Q ss_pred hHHHHHHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 219 EILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
.+..+... ..|....... .+.. +...+..++... .+++||||++++.|+.+++.|+..|+
T Consensus 156 ~~~~~~~~--~~pi~~~~~~--------------~~~~--~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g~ 215 (459)
T 2z83_A 156 TTDPFPDS--NAPIHDLQDE--------------IPDR--AWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQRAGK 215 (459)
T ss_dssp CCCSSCCC--SSCEEEEECC--------------CCSS--CCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTTC
T ss_pred chhhhccC--CCCeEEeccc--------------CCcc--hhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcCC
Confidence 64322111 2233222110 0100 111112233333 57999999999999999999988764
No 70
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.88 E-value=1.2e-20 Score=177.24 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=112.2
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
+|+ .|++.|..+++.+++|+ +.+++||+|||++|.+|++..... +..++|++||++||.|..+.+..+...+++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~l~~~lGL 149 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGPVYRGLGL 149 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHHHHHhcCC
Confidence 788 79999999999999998 999999999999999999644333 347999999999999999999999999999
Q ss_pred eEEEEEcCCchHHHHHHhhcCCcEEEeChHHH-HHHHhcc------CccCC---CccEEEechhhHhh
Q 022383 131 QAHACVGGKSVGEDIRKLEHGVHVVSGTPGRV-CDMIKRK------TLRTR---AIKLLVLDESDEML 188 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l-~~~~~~~------~~~~~---~l~~vViDE~h~~~ 188 (298)
++..++||.+.... ....+++|+|+||++| +.+++.+ .+.++ ++.++|+||+|.++
T Consensus 150 sv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 150 SVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp CEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred eEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999999875433 3344689999999999 7777765 25567 89999999999987
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.86 E-value=9.7e-22 Score=191.94 Aligned_cols=153 Identities=12% Similarity=0.082 Sum_probs=115.1
Q ss_pred CChHHHHHHHHHhhc--------------CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHH
Q 022383 55 KPSAIQQRAVMPIIK--------------GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKV 120 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~--------------~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~ 120 (298)
.|+++|.++++.++. +++.+++++||||||+++ ++++..+.......++|||+|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999998764 368999999999999997 55555554433446999999999999999999
Q ss_pred HHHhhccCCceEEEEEcCCchHHHHHHhh-cCCcEEEeChHHHHHHHhccC--ccCCCccEEEechhhHhhccccHHHHH
Q 022383 121 ILAIGDFINIQAHACVGGKSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRKT--LRTRAIKLLVLDESDEMLSRGFKDQIY 197 (298)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ilV~Tp~~l~~~~~~~~--~~~~~l~~vViDE~h~~~~~~~~~~i~ 197 (298)
++.+... ...++.+.......+. .+.+|+|+||++|...+.... ..+....+||+||||++... ..+.
T Consensus 350 f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~---~~~~ 420 (1038)
T 2w00_A 350 YQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG---EAQK 420 (1038)
T ss_dssp HHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH---HHHH
T ss_pred HHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch---HHHH
Confidence 9887542 1123334444444453 568999999999998876532 24567899999999997532 3455
Q ss_pred HHHHhCCCCccEEEEEeeCch
Q 022383 198 DVYRYLPPDLQVVLISATLPH 218 (298)
Q Consensus 198 ~i~~~~~~~~~~v~~SAT~~~ 218 (298)
.+.+.++ +.+++++|||+..
T Consensus 421 ~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 421 NLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp HHHHHCS-SEEEEEEESSCCC
T ss_pred HHHHhCC-cccEEEEeCCccc
Confidence 6667775 5899999999964
No 72
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.85 E-value=1.8e-20 Score=155.36 Aligned_cols=138 Identities=16% Similarity=0.144 Sum_probs=110.1
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCce-EE
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ-AH 133 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~-~~ 133 (298)
.++++|.++++.+.+++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.++++ ++. +.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~ 162 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF----GEEYVG 162 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG----CGGGEE
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEE
Confidence 6899999999999999999999999999999988777653 347999999999999999988773 566 77
Q ss_pred EEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 134 ACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
.+.|+... ..+|+|+|++.+...... ...++++|||||+|++.+..+. .+.+.++ ..+++++|
T Consensus 163 ~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l~LS 225 (237)
T 2fz4_A 163 EFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRLGLT 225 (237)
T ss_dssp EESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEEEEE
T ss_pred EEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHHH----HHHHhcc-CCEEEEEe
Confidence 77766542 469999999998765542 1246899999999999766544 4555554 67899999
Q ss_pred eeCchh
Q 022383 214 ATLPHE 219 (298)
Q Consensus 214 AT~~~~ 219 (298)
||+.+.
T Consensus 226 ATp~r~ 231 (237)
T 2fz4_A 226 ATFERE 231 (237)
T ss_dssp ESCC--
T ss_pred cCCCCC
Confidence 999754
No 73
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.80 E-value=1e-19 Score=171.02 Aligned_cols=195 Identities=17% Similarity=0.149 Sum_probs=130.3
Q ss_pred HHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHH
Q 022383 65 MPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED 144 (298)
Q Consensus 65 ~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (298)
...++|++++++||||+|||..++ ..+... ...+|++|+++|+.|+++.+++. ++++..+.|+.....
T Consensus 150 ar~l~rk~vlv~apTGSGKT~~al----~~l~~~---~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv- 217 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTYHAI----QKYFSA---KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTV- 217 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHHHHH----HHHHHS---SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECC-
T ss_pred HHhcCCCEEEEEcCCCCCHHHHHH----HHHHhc---CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEe-
Confidence 345688999999999999998433 333232 23599999999999999998875 677888888755410
Q ss_pred HHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCC-CCccEEEEEeeCchhHHHH
Q 022383 145 IRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP-PDLQVVLISATLPHEILEM 223 (298)
Q Consensus 145 ~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~-~~~~~v~~SAT~~~~~~~~ 223 (298)
..-....+++++|++.+. ....++++||||+|++.+.++...+..++..++ ...+++++|||.+ .+..+
T Consensus 218 -~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~-~i~~l 287 (677)
T 3rc3_A 218 -QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID-LVMEL 287 (677)
T ss_dssp -STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-HHHHH
T ss_pred -cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-HHHHH
Confidence 000123578888875443 246779999999999988889999999888887 7789999999953 23444
Q ss_pred HHhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 224 TTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
... .+....+..... ..... . ... . + ..+... ....+|||+++++++.+++.|++.+.
T Consensus 288 ~~~-~~~~~~v~~~~r---~~~l~---~-~~~---~---l-~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g~ 345 (677)
T 3rc3_A 288 MYT-TGEEVEVRDYKR---LTPIS---V-LDH---A---L-ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRGL 345 (677)
T ss_dssp HHH-HTCCEEEEECCC---SSCEE---E-CSS---C---C-CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTTC
T ss_pred HHh-cCCceEEEEeee---cchHH---H-HHH---H---H-HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcCC
Confidence 333 234444322111 00000 0 000 0 0 011122 24568999999999999999988654
No 74
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.80 E-value=1.7e-18 Score=159.00 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=107.1
Q ss_pred CCChHHHHHHHHHh----hcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCC
Q 022383 54 EKPSAIQQRAVMPI----IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFIN 129 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~----~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~ 129 (298)
..|+|+|.++++.+ ..++++++..+||+|||+.++..+.. +.......++||||| ..|+.|+.+.++++.. +
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~--~ 111 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKKENELTPSLVICP-LSVLKNWEEELSKFAP--H 111 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHHTTCCSSEEEEEC-STTHHHHHHHHHHHCT--T
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCC--C
Confidence 35999999999876 35789999999999999886554443 333333457999999 5699999999998864 4
Q ss_pred ceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccE
Q 022383 130 IQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQV 209 (298)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~ 209 (298)
.++..++|+... ....+++|+|+|++.+..... +...++++||+||+|++.+.. ......+..++ ..+.
T Consensus 112 ~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~~~ 180 (500)
T 1z63_A 112 LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SKYR 180 (500)
T ss_dssp SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EEEE
T ss_pred ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cCcE
Confidence 566666665422 112457999999998875433 334577999999999986543 22334444553 4678
Q ss_pred EEEEeeCc
Q 022383 210 VLISATLP 217 (298)
Q Consensus 210 v~~SAT~~ 217 (298)
+++|||+.
T Consensus 181 l~LTaTP~ 188 (500)
T 1z63_A 181 IALTGTPI 188 (500)
T ss_dssp EEECSSCS
T ss_pred EEEecCCC
Confidence 99999983
No 75
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.77 E-value=1.3e-18 Score=170.67 Aligned_cols=159 Identities=16% Similarity=0.094 Sum_probs=107.7
Q ss_pred CCChHHHHHHHHHhhc--CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCce
Q 022383 54 EKPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ 131 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~--~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~ 131 (298)
..|+|+|.+++..+.. +.++++..+||+|||+.++..+...+... ...++|||||+ .|+.|+.+.+.+.. +++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g-~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l~ 226 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG-AAERVLIIVPE-TLQHQWLVEMLRRF---NLR 226 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS-SCCCEEEECCT-TTHHHHHHHHHHHS---CCC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC-CCCeEEEEeCH-HHHHHHHHHHHHHh---CCC
Confidence 3699999999998775 45899999999999999877776665443 23479999999 99999999886653 566
Q ss_pred EEEEEcCCchHHHHH--HhhcCCcEEEeChHHHHHHHhc-cCccCCCccEEEechhhHhhccccH--HHHHHHHHhCCCC
Q 022383 132 AHACVGGKSVGEDIR--KLEHGVHVVSGTPGRVCDMIKR-KTLRTRAIKLLVLDESDEMLSRGFK--DQIYDVYRYLPPD 206 (298)
Q Consensus 132 ~~~~~~~~~~~~~~~--~~~~~~~ilV~Tp~~l~~~~~~-~~~~~~~l~~vViDE~h~~~~~~~~--~~i~~i~~~~~~~ 206 (298)
+..+.++........ ......+|+|+|++.+...... ..+...++++||+||+|++...+.. ..+..+.......
T Consensus 227 v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~ 306 (968)
T 3dmq_A 227 FALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHV 306 (968)
T ss_dssp CEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTC
T ss_pred EEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcC
Confidence 655554332211111 1113568999999887642211 1234568899999999998654321 1222232222345
Q ss_pred ccEEEEEeeCc
Q 022383 207 LQVVLISATLP 217 (298)
Q Consensus 207 ~~~v~~SAT~~ 217 (298)
.+++++|||+.
T Consensus 307 ~~~L~LTATPi 317 (968)
T 3dmq_A 307 PGVLLLTATPE 317 (968)
T ss_dssp SSEEESCSSCS
T ss_pred CcEEEEEcCCc
Confidence 67999999983
No 76
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.72 E-value=3.8e-17 Score=151.51 Aligned_cols=129 Identities=18% Similarity=0.062 Sum_probs=100.4
Q ss_pred CChHHHHHHHHH----hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 55 KPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 55 ~~~~~Q~~~~~~----~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
.++|+|.+++.. +..|+++++++|||+|||++|++|++.. +++++|++||++|+.|+.+.+..+.+..++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------KPKVLFVVRTHNEFYPIYRDLTKIREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------CSEEEEEESSGGGHHHHHHHHTTCCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------CCeEEEEcCCHHHHHHHHHHHHHHhhhcCc
Confidence 489999997765 4578999999999999999999999982 568999999999999999999888776678
Q ss_pred eEEEEEcCCch---------------------------------HHHH------------------HHhhcCCcEEEeCh
Q 022383 131 QAHACVGGKSV---------------------------------GEDI------------------RKLEHGVHVVSGTP 159 (298)
Q Consensus 131 ~~~~~~~~~~~---------------------------------~~~~------------------~~~~~~~~ilV~Tp 159 (298)
++..+.|.... .... .....+++|+|+|+
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 88777663210 0111 22234689999999
Q ss_pred HHHHHHHhccCccC-CCccEEEechhhHhhc
Q 022383 160 GRVCDMIKRKTLRT-RAIKLLVLDESDEMLS 189 (298)
Q Consensus 160 ~~l~~~~~~~~~~~-~~l~~vViDE~h~~~~ 189 (298)
..|........+.+ .....+||||||.+.+
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 157 PYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred hHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99987653333322 4778999999999876
No 77
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.71 E-value=3e-16 Score=151.46 Aligned_cols=154 Identities=14% Similarity=0.165 Sum_probs=109.7
Q ss_pred CChHHHHHHHHHhh----cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 55 KPSAIQQRAVMPII----KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
.++|+|.+++..+. .+++.++..+||.|||+.++..+...+........+||||| ..|+.|+.+.+.++.. ++
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~ 312 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP--DL 312 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST--TC
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC--Cc
Confidence 58999999998665 78999999999999998876555544333233446899999 7889999999998863 56
Q ss_pred eEEEEEcCCchHHHHHHh------------hcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHH
Q 022383 131 QAHACVGGKSVGEDIRKL------------EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYD 198 (298)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~------------~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~ 198 (298)
++..++|+.......... ...++|+|+|++.+...... +...+.++||+||||++-... .....
T Consensus 313 ~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~~--s~~~~ 388 (800)
T 3mwy_W 313 NCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNAE--SSLYE 388 (800)
T ss_dssp CEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCSS--SHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCch--hHHHH
Confidence 777777766554433322 23578999999998764322 222367899999999984332 23334
Q ss_pred HHHhCCCCccEEEEEeeC
Q 022383 199 VYRYLPPDLQVVLISATL 216 (298)
Q Consensus 199 i~~~~~~~~~~v~~SAT~ 216 (298)
.+..++ ....+++|||+
T Consensus 389 ~l~~l~-~~~rl~LTgTP 405 (800)
T 3mwy_W 389 SLNSFK-VANRMLITGTP 405 (800)
T ss_dssp HHTTSE-EEEEEEECSCC
T ss_pred HHHHhh-hccEEEeeCCc
Confidence 445553 45678999998
No 78
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.70 E-value=4.7e-15 Score=137.24 Aligned_cols=235 Identities=12% Similarity=0.106 Sum_probs=162.2
Q ss_pred CCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 51 YGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
.|.. |++.|....-.+..|+ +..+.||.|||+++.+|++-.... +..+.|++|+..||.|-.+.+..+...+|+
T Consensus 72 lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---G~~vhVvT~ndyLA~rdae~m~~l~~~Lgl 145 (822)
T 3jux_A 72 LGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---GKGVHLVTVNDYLARRDALWMGPVYLFLGL 145 (822)
T ss_dssp TSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHHHHTTC
T ss_pred hCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---CCceEEEeccHHHHHhHHHHHHHHHHHhCC
Confidence 5655 8999998888888887 889999999999999998744333 446899999999999999999999999999
Q ss_pred eEEEEEcC--------------------------------------------------CchHHHHHHhhcCCcEEEeChH
Q 022383 131 QAHACVGG--------------------------------------------------KSVGEDIRKLEHGVHVVSGTPG 160 (298)
Q Consensus 131 ~~~~~~~~--------------------------------------------------~~~~~~~~~~~~~~~ilV~Tp~ 160 (298)
++....+. .+..+.... -.|||+.+|..
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a--Y~~DItYgTn~ 223 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA--YLCDVTYGTNN 223 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH--HHSSEEEEEHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH--hcCCCEEccCc
Confidence 99888872 111111111 23799999998
Q ss_pred HHH-HHHhcc------CccCCCccEEEechhhHhhccc----------------cHHHHHHHHHhC--------------
Q 022383 161 RVC-DMIKRK------TLRTRAIKLLVLDESDEMLSRG----------------FKDQIYDVYRYL-------------- 203 (298)
Q Consensus 161 ~l~-~~~~~~------~~~~~~l~~vViDE~h~~~~~~----------------~~~~i~~i~~~~-------------- 203 (298)
.|- .+++.+ ..-.+.+.+.||||+|.++=+. ....+..+.+.+
T Consensus 224 EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~ 303 (822)
T 3jux_A 224 EFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKART 303 (822)
T ss_dssp HHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSC
T ss_pred chhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCe
Confidence 875 344432 2234778999999999976211 001111111111
Q ss_pred ------------------------------------------CC------------------------------------
Q 022383 204 ------------------------------------------PP------------------------------------ 205 (298)
Q Consensus 204 ------------------------------------------~~------------------------------------ 205 (298)
.+
T Consensus 304 v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiE 383 (822)
T 3jux_A 304 IILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIE 383 (822)
T ss_dssp EEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHH
T ss_pred EEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHH
Confidence 00
Q ss_pred -------------------------CccEEEEEeeCchhHHHHHHhcCCCCEEEEecCCccCcCCceEE-EEEecCccch
Q 022383 206 -------------------------DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQF-FVAVEREEWK 259 (298)
Q Consensus 206 -------------------------~~~~v~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~k 259 (298)
-.++.+||+|.......+...|..+ .+.++. ......+.+. .+... ...|
T Consensus 384 aKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPt-nkp~~R~d~~d~vy~t-~~eK 459 (822)
T 3jux_A 384 AKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPT-HKPMIRKDHDDLVFRT-QKEK 459 (822)
T ss_dssp HHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCC-SSCCCCEECCCEEESS-HHHH
T ss_pred HHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECC-CCCcceeecCcEEEec-HHHH
Confidence 1359999999988877777666433 333332 2222333332 23333 3448
Q ss_pred HHHHHHHHhhC--CCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 260 FDTLCDLYDTL--TITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 260 ~~~l~~ll~~~--~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
...+...+... .+.++||||+|++.++.++..|.+.|+
T Consensus 460 ~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi 499 (822)
T 3jux_A 460 YEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGI 499 (822)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCC
Confidence 88888887653 467999999999999999999999886
No 79
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.68 E-value=9e-15 Score=137.92 Aligned_cols=155 Identities=15% Similarity=0.098 Sum_probs=107.3
Q ss_pred CChHHHHHHHHHhh---------cCCcEEEEcCCCCchHHHHHHHHHHhhccCC----CCeEEEEEcCcHHHHHHHHHHH
Q 022383 55 KPSAIQQRAVMPII---------KGRDVIAQAQSGTGKTSMIALTVCQTVDTSS----REVQALILSPTRELATQTEKVI 121 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~---------~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~----~~~~~lil~p~~~l~~q~~~~~ 121 (298)
.++|+|.+++..+. .++..++..+||.|||+.++..+...+...+ ...++|||||+ .|+.|+.+.+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 59999999998763 4567999999999999887766655544322 23468999996 8999999999
Q ss_pred HHhhccCCceEEEEEcCCchHH--HHHHhh------cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccH
Q 022383 122 LAIGDFINIQAHACVGGKSVGE--DIRKLE------HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFK 193 (298)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~ 193 (298)
.++... .+.+..++++..... ...... ...+|+|+|++.+..... .+....+++||+||+|++-... .
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ikn~~-~ 209 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLKNSD-N 209 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCCTTC-H
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecCChh-h
Confidence 988754 455666666644321 111211 147899999998875432 3344578999999999985432 2
Q ss_pred HHHHHHHHhCCCCccEEEEEeeC
Q 022383 194 DQIYDVYRYLPPDLQVVLISATL 216 (298)
Q Consensus 194 ~~i~~i~~~~~~~~~~v~~SAT~ 216 (298)
... ..+..+. ....+++|||+
T Consensus 210 ~~~-~al~~l~-~~~rl~LTgTP 230 (644)
T 1z3i_X 210 QTY-LALNSMN-AQRRVLISGTP 230 (644)
T ss_dssp HHH-HHHHHHC-CSEEEEECSSC
T ss_pred HHH-HHHHhcc-cCcEEEEecCc
Confidence 222 2333343 45789999997
No 80
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.61 E-value=8.4e-16 Score=142.06 Aligned_cols=127 Identities=17% Similarity=0.199 Sum_probs=86.6
Q ss_pred CCCCCChHHHHHHHHH----hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 022383 51 YGFEKPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (298)
Q Consensus 51 ~~~~~~~~~Q~~~~~~----~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (298)
.|| .++++|.+++.. +..|+++++++|||+|||++|++|++.. +.+++|++||++|+.|+.+.+.++
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l-- 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLL-- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGG--
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhc--
Confidence 366 699999998654 4588999999999999999999998764 458999999999999999887764
Q ss_pred cCCceEEEEEcCCc--------hH------------------------HH---------------HHHhhcCCcEEEeCh
Q 022383 127 FINIQAHACVGGKS--------VG------------------------ED---------------IRKLEHGVHVVSGTP 159 (298)
Q Consensus 127 ~~~~~~~~~~~~~~--------~~------------------------~~---------------~~~~~~~~~ilV~Tp 159 (298)
++++..+.|... .. .. ......+++|+|+|+
T Consensus 75 --~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~ 152 (540)
T 2vl7_A 75 --GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTY 152 (540)
T ss_dssp --TCCEEEC---------------------------------------------------------CTTGGGCSEEEEET
T ss_pred --CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEECh
Confidence 344444333210 00 00 011124579999999
Q ss_pred HHHHHHHhccCc-------cCCCccEEEechhhHhh
Q 022383 160 GRVCDMIKRKTL-------RTRAIKLLVLDESDEML 188 (298)
Q Consensus 160 ~~l~~~~~~~~~-------~~~~l~~vViDE~h~~~ 188 (298)
..|..-...+.+ .+....++||||||.+.
T Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 153 PYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 999864332221 24567899999999983
No 81
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.42 E-value=5.6e-13 Score=124.77 Aligned_cols=81 Identities=22% Similarity=0.232 Sum_probs=67.3
Q ss_pred CChHHHHHHHHH----hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc
Q 022383 55 KPSAIQQRAVMP----IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINI 130 (298)
Q Consensus 55 ~~~~~Q~~~~~~----~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~ 130 (298)
.|++.|.+.+.. +.+|+++++++|||+|||++|++|++..+... +.+++|++||++++.|+.+.++.+....++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhccCe
Confidence 489999998864 55899999999999999999999999987543 458999999999999999999988766566
Q ss_pred eEEEEEc
Q 022383 131 QAHACVG 137 (298)
Q Consensus 131 ~~~~~~~ 137 (298)
++..+.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 6666554
No 82
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.10 E-value=2.3e-09 Score=101.20 Aligned_cols=68 Identities=28% Similarity=0.382 Sum_probs=52.3
Q ss_pred CCCCChHHHHHHHHHhh----cCC-cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 022383 52 GFEKPSAIQQRAVMPII----KGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (298)
Q Consensus 52 ~~~~~~~~Q~~~~~~~~----~~~-~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (298)
+| .|++.|..++..+. .|. ..++.+.||+|||+++.-.+ ... +..+|||+|+..++.|+++.++.+..
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~-~~~-----~~~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVI-EAL-----GRPALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHH-----TCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHH-HHh-----CCCEEEEecCHHHHHHHHHHHHHHCC
Confidence 45 69999998888655 343 57788999999998765333 332 12489999999999999999998853
No 83
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=99.08 E-value=3.2e-10 Score=106.05 Aligned_cols=160 Identities=15% Similarity=0.177 Sum_probs=97.5
Q ss_pred HHHHHHHHCC-CCCChHHHHHHHHHhhcCCcEEEEcCCCCchH--HHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHH
Q 022383 43 DLLRGIYQYG-FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKT--SMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (298)
Q Consensus 43 ~i~~~l~~~~-~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT--~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (298)
.+...|.... -...++.|+.+++.++.++.+++.|++|+||| .+++++.+..+... .+.++++++||...+.++.+
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-~~~~vll~APTg~AA~~L~e 214 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-ERCRIRLAAPTGKAAARLTE 214 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-CCCCEEEEBSSHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-CCCeEEEEeCChhHHHHHHH
Confidence 3444555432 12236899999999999999999999999999 56677777655322 35589999999999999998
Q ss_pred HHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHH
Q 022383 120 VILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199 (298)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i 199 (298)
.+.......++..... .+... ....+ ..++-.+|+.. . +........+++++||||++++ + ...+..+
T Consensus 215 ~~~~~~~~l~l~~~~~-~~~~~--~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAsml-~---~~~~~~L 282 (608)
T 1w36_D 215 SLGKALRQLPLTDEQK-KRIPE--DASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEASMI-D---LPMMSRL 282 (608)
T ss_dssp HHTHHHHHSSCCSCCC-CSCSC--CCBTT---TSCC-------------CTTSCCSCSEEEECSGGGC-B---HHHHHHH
T ss_pred HHHHHHhcCCCCHHHH-hccch--hhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechhhC-C---HHHHHHH
Confidence 8876554433221000 00000 00000 11222222211 1 1111122337899999999955 3 4567788
Q ss_pred HHhCCCCccEEEEEee
Q 022383 200 YRYLPPDLQVVLISAT 215 (298)
Q Consensus 200 ~~~~~~~~~~v~~SAT 215 (298)
++.++...|++++.-.
T Consensus 283 l~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 283 IDALPDHARVIFLGDR 298 (608)
T ss_dssp HHTCCTTCEEEEEECT
T ss_pred HHhCCCCCEEEEEcch
Confidence 8888888999888654
No 84
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=98.90 E-value=7.5e-08 Score=90.83 Aligned_cols=66 Identities=21% Similarity=0.317 Sum_probs=50.2
Q ss_pred CChHHHHHHHHHhh----cCC-cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 022383 55 KPSAIQQRAVMPII----KGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~----~~~-~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (298)
.|+..|..++..+. +|. ...+.+.||+|||+...-.+ ... +..+|||+|+..+|.|+++.++.+..
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~-~~~-----~~~~lvv~~~~~~A~~l~~el~~~~~ 82 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLI-KEV-----NKPTLVIAHNKTLAGQLYSEFKEFFP 82 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHH-----CCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHH-HHh-----CCCEEEEECCHHHHHHHHHHHHHHcC
Confidence 58899988887654 343 57788999999997654322 322 12489999999999999999999854
No 85
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.56 E-value=1.1e-06 Score=82.39 Aligned_cols=69 Identities=22% Similarity=0.186 Sum_probs=54.5
Q ss_pred CCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
..+++.|.+++..++.+...+|.||+|+|||....-.+ ..+... .+.++++++||...++++.+.+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i-~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIV-YHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHH-HHHHTS-SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHH-HHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 45899999999998888889999999999997654333 333221 3458999999999999999887654
No 86
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.52 E-value=3.8e-07 Score=86.04 Aligned_cols=67 Identities=19% Similarity=0.232 Sum_probs=54.0
Q ss_pred CChHHHHHHHHHhhcCC-cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 55 KPSAIQQRAVMPIIKGR-DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~-~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
.+++.|.+|+..++..+ -.+|+||.|+|||.+..-.+...+.. +.++|+++||..-++++.+++...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhc
Confidence 58999999999987655 57899999999998765545444443 458999999999999999988654
No 87
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.51 E-value=9.2e-07 Score=81.95 Aligned_cols=127 Identities=21% Similarity=0.270 Sum_probs=80.9
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEE
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHA 134 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (298)
.+++.|.+++..+..++.+++.||.|+|||.... .++..+... +.++++++||...+..+.+.+. .....
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~~--g~~Vl~~ApT~~Aa~~L~e~~~-------~~a~T 258 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAESL--GLEVGLCAPTGKAARRLGEVTG-------RTAST 258 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHHT--TCCEEEEESSHHHHHHHHHHHT-------SCEEE
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHhc--CCeEEEecCcHHHHHHhHhhhc-------ccHHH
Confidence 4899999999999999999999999999996532 333333332 4578999999998887766431 11111
Q ss_pred EEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEe
Q 022383 135 CVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (298)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SA 214 (298)
++ .+.. . .|+ ............++|||||++++. ...+..+++.++...+++++.-
T Consensus 259 ih----------~ll~---~---~~~----~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~lilvGD 314 (574)
T 3e1s_A 259 VH----------RLLG---Y---GPQ----GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGARVLLVGD 314 (574)
T ss_dssp HH----------HHTT---E---ETT----EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCEEEEEEC
T ss_pred HH----------HHHc---C---Ccc----hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCEEEEEec
Confidence 10 0000 0 000 001112233467999999999863 3456677777777777777644
Q ss_pred e
Q 022383 215 T 215 (298)
Q Consensus 215 T 215 (298)
.
T Consensus 315 ~ 315 (574)
T 3e1s_A 315 T 315 (574)
T ss_dssp T
T ss_pred c
Confidence 3
No 88
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.49 E-value=1.7e-06 Score=83.18 Aligned_cols=69 Identities=19% Similarity=0.222 Sum_probs=54.5
Q ss_pred CCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
..+++.|.+++..++.+.-++|.||.|+|||.+..-.+...+.. .+.++++++||...++++.+++.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45789999999999888889999999999997654333322221 2448999999999999999988765
No 89
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.44 E-value=1.4e-06 Score=78.73 Aligned_cols=136 Identities=16% Similarity=0.213 Sum_probs=80.1
Q ss_pred HHCCCCCChHHHHHHHHHhhc----C-CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 022383 49 YQYGFEKPSAIQQRAVMPIIK----G-RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (298)
Q Consensus 49 ~~~~~~~~~~~Q~~~~~~~~~----~-~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (298)
..+.|..+++-|++++..+.. + ..+++.|+.|+|||... ..++..+.... ...+++++||...+..+.+.+
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~-~~~il~~a~T~~Aa~~l~~~~-- 94 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG-ETGIILAAPTHAAKKILSKLS-- 94 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT-CCCEEEEESSHHHHHHHHHHH--
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC-CceEEEecCcHHHHHHHHhhh--
Confidence 446788999999999997653 2 48999999999999654 34444443322 136899999998887776644
Q ss_pred hhccCCceEEEEEcCCchHHHHHHhh----cCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHH
Q 022383 124 IGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDV 199 (298)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i 199 (298)
+.....+++ ...+. .....+.. .....+...+++||||++.+. ...+..+
T Consensus 95 -----~~~~~T~h~-------~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~----~~~~~~l 148 (459)
T 3upu_A 95 -----GKEASTIHS-------ILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYD----RKLFKIL 148 (459)
T ss_dssp -----SSCEEEHHH-------HHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCC----HHHHHHH
T ss_pred -----ccchhhHHH-------HhccCcccccccchhcc----------cccccccCCCEEEEECchhCC----HHHHHHH
Confidence 111211110 00000 00000000 112345678999999999763 2344556
Q ss_pred HHhCCCCccEEEEEe
Q 022383 200 YRYLPPDLQVVLISA 214 (298)
Q Consensus 200 ~~~~~~~~~~v~~SA 214 (298)
.+.++...+++++.-
T Consensus 149 ~~~~~~~~~~~~vGD 163 (459)
T 3upu_A 149 LSTIPPWCTIIGIGD 163 (459)
T ss_dssp HHHSCTTCEEEEEEC
T ss_pred HHhccCCCEEEEECC
Confidence 666665566666543
No 90
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.42 E-value=3e-06 Score=81.39 Aligned_cols=69 Identities=20% Similarity=0.187 Sum_probs=54.2
Q ss_pred CCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
..+++.|.+++..++.+.-.+|.||+|+|||....- ++..+... .+.++++++||..-++++.+.+.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~-~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHH-HHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHH-HHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 357899999999998888899999999999976443 33333321 3458999999999999999887654
No 91
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.20 E-value=0.00013 Score=68.57 Aligned_cols=70 Identities=16% Similarity=0.212 Sum_probs=55.0
Q ss_pred CCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCC-CCeEEEEEcCcHHHHHHHHHHHHHhh
Q 022383 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIG 125 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~ 125 (298)
..+++-|.+++.. .+..++|.|+.|||||.+..--+...+.... ...+++++++|+..+.++.+++.+..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4689999999973 3678999999999999876555555444322 23489999999999999999998764
No 92
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.95 E-value=1.8e-05 Score=62.61 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=46.2
Q ss_pred HhcCCCCEEEEecCCccCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 225 TKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
..++.+|..+.+........++.+.++.++... |...+..++.... +++||||+++..++.+++.|+..|+
T Consensus 9 ~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~-K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~ 79 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMGAASLDVIQEVEYVKEEA-KMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGV 79 (191)
T ss_dssp -------------------CCSEEEEEECCGGG-HHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTC
T ss_pred ccccCCCEEEEECCCCCCCcCceEEEEEcChHH-HHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCC
Confidence 457788888888777777889999999988776 9999999998753 6899999999999999999988765
No 93
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.80 E-value=0.00015 Score=63.50 Aligned_cols=71 Identities=13% Similarity=0.123 Sum_probs=55.9
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (298)
.+.|+|..++..+...+-+++..+-+.|||.+....++...... .+..++++.|+..-+..+.+.++.+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 58999999998776567799999999999987666555433332 345799999999999988888877654
No 94
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.79 E-value=5.2e-05 Score=58.98 Aligned_cols=57 Identities=35% Similarity=0.656 Sum_probs=50.7
Q ss_pred cCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 241 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 241 ~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
..+.++.|.++.++....|...+..+++....+++||||++++.|+.++..|+..|+
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~ 59 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGH 59 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTC
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 345789999999998777999999999988888999999999999999999988764
No 95
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.73 E-value=7.1e-05 Score=57.47 Aligned_cols=56 Identities=27% Similarity=0.261 Sum_probs=49.1
Q ss_pred cCcCCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 241 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 241 ~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
....++.+.++.++... |...+..+++....+++||||++++.++.+++.|+..|+
T Consensus 5 ~~~~~i~~~~~~~~~~~-K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~ 60 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREEN-KFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGY 60 (163)
T ss_dssp -CCCCEEEEEEECCGGG-HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTC
T ss_pred cCcccceEEEEECChHH-HHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCC
Confidence 45667999999988776 999999999988888999999999999999999988765
No 96
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.68 E-value=0.00011 Score=56.59 Aligned_cols=54 Identities=52% Similarity=0.831 Sum_probs=47.1
Q ss_pred CCceEEEEEecCccchHHHHHHHHhhCCCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 244 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 244 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
.++.|.++.++..+.|...+..+++....+++||||++++.++.++..|+..|+
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~ 55 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKF 55 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC
Confidence 357888998887777999999999988888999999999999999999988764
No 97
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.55 E-value=0.0014 Score=61.05 Aligned_cols=73 Identities=12% Similarity=0.142 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI 128 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~ 128 (298)
.++|+|..++..+...+-+++..+-|.|||.+....++..+... .+..++++.|+...+..+.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 48999999998876667899999999999987665444444332 24589999999999999998888776443
No 98
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.54 E-value=0.00025 Score=55.70 Aligned_cols=57 Identities=25% Similarity=0.199 Sum_probs=48.4
Q ss_pred ccCcCCceEEEEEecCccchHHHHHHHHhhC-CCCcEEEEecchhhHHHHHHHHhhhcC
Q 022383 240 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL-TITQAVIFCNTKRKIYYSVFYFWIRWI 297 (298)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~~k~~~l~~ll~~~-~~~k~lIf~~s~~~~~~l~~~L~~~~~ 297 (298)
.....++.+.++.++... |...+..+++.. +.+++||||++++.++.+++.|+..|+
T Consensus 14 ~~~~~~i~q~~~~v~~~~-K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~ 71 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESD-KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY 71 (185)
T ss_dssp --CCTTEEEEEEECCGGG-HHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCceEEEEEeCcHH-HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 345678999999998776 999999999876 467999999999999999999988765
No 99
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.45 E-value=0.00052 Score=60.94 Aligned_cols=85 Identities=24% Similarity=0.185 Sum_probs=52.3
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhc
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEH 150 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (298)
+-.++.|+.|+|||.... +.+.. ...+|++||+++++++.+.+.+.+.. .
T Consensus 162 ~v~~I~G~aGsGKTt~I~----~~~~~----~~~lVlTpT~~aa~~l~~kl~~~~~~----------------------~ 211 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL----SRVNF----EEDLILVPGRQAAEMIRRRANASGII----------------------V 211 (446)
T ss_dssp EEEEEEECTTSCHHHHHH----HHCCT----TTCEEEESCHHHHHHHHHHHTTTSCC----------------------C
T ss_pred cEEEEEcCCCCCHHHHHH----HHhcc----CCeEEEeCCHHHHHHHHHHhhhcCcc----------------------c
Confidence 357889999999997642 22221 24699999999999988866432100 0
Q ss_pred CCcEEEeChHHHHHHHhccCccCCCccEEEechhhHh
Q 022383 151 GVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEM 187 (298)
Q Consensus 151 ~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~ 187 (298)
....-|.|-++++. +.........+.+||||+-++
T Consensus 212 ~~~~~V~T~dsfL~--~~~~~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 212 ATKDNVRTVDSFLM--NYGKGARCQFKRLFIDEGLML 246 (446)
T ss_dssp CCTTTEEEHHHHHH--TTTSSCCCCCSEEEEETGGGS
T ss_pred cccceEEEeHHhhc--CCCCCCCCcCCEEEEeCcccC
Confidence 01223556655442 222222235799999999754
No 100
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.39 E-value=0.00092 Score=52.36 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=26.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
.|+-.++.||+|+|||...+-.+...... +.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLG---KKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT---TCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeecc
Confidence 35667899999999997755444333322 34788888874
No 101
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.37 E-value=0.00073 Score=52.52 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.|+.+++.||+|+|||...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4789999999999999543
No 102
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.35 E-value=0.00032 Score=66.42 Aligned_cols=80 Identities=15% Similarity=0.093 Sum_probs=58.9
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhcc-CCCCeEEEEEcCcHHHHHHHHHHHHHhhccC---Cc
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPTRELATQTEKVILAIGDFI---NI 130 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~-~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~---~~ 130 (298)
.+++-|.+++.. .+.+++|.|+.|||||.+..--+...+.. .-...++++|+.|+..+.++.+++.+..... ++
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~~ 79 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKEARGL 79 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTTS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcccccCC
Confidence 478999999975 36789999999999998765545444433 2234589999999999999999998764322 35
Q ss_pred eEEEEE
Q 022383 131 QAHACV 136 (298)
Q Consensus 131 ~~~~~~ 136 (298)
.+.+++
T Consensus 80 ~v~Tfh 85 (673)
T 1uaa_A 80 MISTFH 85 (673)
T ss_dssp EEEEHH
T ss_pred EEEeHH
Confidence 555544
No 103
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.22 E-value=0.002 Score=48.23 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=17.5
Q ss_pred hcCCcEEEEcCCCCchHHHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~~~ 88 (298)
..+.++++.||+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 466899999999999996543
No 104
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.19 E-value=0.00085 Score=64.00 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=59.4
Q ss_pred CCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCC-CCeEEEEEcCcHHHHHHHHHHHHHhhcc--CCc
Q 022383 54 EKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS-REVQALILSPTRELATQTEKVILAIGDF--INI 130 (298)
Q Consensus 54 ~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~-~~~~~lil~p~~~l~~q~~~~~~~~~~~--~~~ 130 (298)
..+++-|.+++.+ .+.+++|.|+.|||||.+..--+...+.... ...++++++.|+..+.++.+++.++... .++
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~~~ 87 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAEDV 87 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGTTS
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcccccCc
Confidence 4689999999876 3578999999999999876555555444322 3347999999999999999998876422 245
Q ss_pred eEEEEE
Q 022383 131 QAHACV 136 (298)
Q Consensus 131 ~~~~~~ 136 (298)
.+.+++
T Consensus 88 ~v~Tfh 93 (724)
T 1pjr_A 88 WISTFH 93 (724)
T ss_dssp EEEEHH
T ss_pred EEeeHH
Confidence 555543
No 105
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.17 E-value=0.0012 Score=52.08 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=27.7
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
.|+-.++.||+|+|||.+.+-.+.+.... +.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~---g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIA---KQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEecc
Confidence 45667889999999997765444443322 45788888874
No 106
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.16 E-value=0.00032 Score=53.01 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCchHHH
Q 022383 69 KGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~ 86 (298)
.|+.+++.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 688999999999999954
No 107
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.15 E-value=0.00049 Score=55.60 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=59.7
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (298)
.|.-+++.||+|+|||.+.+-.+...... +.+++++.|...- . . ...+....++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~---g~kVli~~~~~d~--r-~--~~~i~srlG~~~---------------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA---DVKYLVFKPKIDT--R-S--IRNIQSRTGTSL---------------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEEECCCG--G-G--CSSCCCCCCCSS----------------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEEeccCc--h-H--HHHHHHhcCCCc----------------
Confidence 45668889999999997755444443322 4478888765421 0 0 001111112110
Q ss_pred hcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 149 EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 149 ~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
..+-+.+.+.+...+... ..-...++|||||++.+.. .....+..+.+ .+.++++..
T Consensus 67 ---~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l~~-~~ve~l~~L~~---~gi~Vil~G 123 (223)
T 2b8t_A 67 ---PSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFFDD-RICEVANILAE---NGFVVIISG 123 (223)
T ss_dssp ---CCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGSCT-HHHHHHHHHHH---TTCEEEEEC
T ss_pred ---cccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccCcH-HHHHHHHHHHh---CCCeEEEEe
Confidence 123345566666666543 2234689999999987532 22333433333 245555443
No 108
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.15 E-value=0.0017 Score=55.86 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=24.6
Q ss_pred ChHHHHHHHHHhh----cCC---cEEEEcCCCCchHHHHH
Q 022383 56 PSAIQQRAVMPII----KGR---DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 56 ~~~~Q~~~~~~~~----~~~---~~li~~pTG~GKT~~~~ 88 (298)
++|||.+++..+. +|+ .+++.||.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 4678888876654 443 48999999999996654
No 109
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.15 E-value=0.0027 Score=53.09 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=34.3
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH--hhcCCcEEEEcCCCCchHHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP--IIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~--~~~~~~~li~~pTG~GKT~~~ 87 (298)
+..+|+++.-.+..++.+.+.- ..+. ...+.+.. +..++.+++.||+|+|||...
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~-~~~~-~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVV-ELPL-KHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHT-HHHH-HCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHH-HHHh-hCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3467899877777777776631 1111 11122222 235678999999999999653
No 110
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.0032 Score=53.62 Aligned_cols=41 Identities=10% Similarity=0.280 Sum_probs=25.0
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHh---CCCCccEEEEEeeCc
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRY---LPPDLQVVLISATLP 217 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~---~~~~~~~v~~SAT~~ 217 (298)
...-+|++||+|.+.+ .+.+..+++. -....-+|++++|+.
T Consensus 131 ~~~~ii~lDE~d~l~~---q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 131 KRKTLILIQNPENLLS---EKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp SCEEEEEEECCSSSCC---THHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CCceEEEEecHHHhhc---chHHHHHHhcccccCCcEEEEEEecCcc
Confidence 3456899999999872 3334444432 122445667787763
No 111
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.11 E-value=0.0053 Score=48.68 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=26.0
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEe
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SA 214 (298)
..-.++|+||+|.+... ....+..+++..+.+..+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999987433 34455666666655565555443
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.07 E-value=0.0014 Score=52.34 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHH
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (298)
|+-.++.||.|+|||.+.+-.+.+.... +.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~---g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA---KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEeccC
Confidence 4556789999999998766555554433 457899988753
No 113
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.04 E-value=0.0013 Score=66.41 Aligned_cols=67 Identities=19% Similarity=0.300 Sum_probs=54.8
Q ss_pred CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHHHHHHHHhhccCC---CCeEEEEEcCcHHHHHHHHHHHHH
Q 022383 55 KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSS---REVQALILSPTRELATQTEKVILA 123 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~---~~~~~lil~p~~~l~~q~~~~~~~ 123 (298)
.+++-|.+++..- +++++|.|+.|||||.+.+--++..+.... ...+++++++|++.+.++.+++..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 4899999998754 889999999999999887666666655532 334899999999999999988876
No 114
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.95 E-value=0.0037 Score=54.44 Aligned_cols=29 Identities=34% Similarity=0.441 Sum_probs=19.6
Q ss_pred CccEEEechhhHhhccc-cHHHHHHHHHhC
Q 022383 175 AIKLLVLDESDEMLSRG-FKDQIYDVYRYL 203 (298)
Q Consensus 175 ~l~~vViDE~h~~~~~~-~~~~i~~i~~~~ 203 (298)
...+||+||+|.+.... ....+..+++..
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 45689999999986542 345555666544
No 115
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.90 E-value=0.0083 Score=49.77 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=15.2
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
+.+++.||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 579999999999996543
No 116
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.89 E-value=0.0058 Score=52.13 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
+..+++.||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999653
No 117
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.83 E-value=0.003 Score=47.12 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=16.7
Q ss_pred hhcCCcEEEEcCCCCchHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~ 86 (298)
...+.++++.||+|+|||..
T Consensus 24 ~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHH
T ss_pred hCCCCcEEEECCCCccHHHH
Confidence 34568999999999999953
No 118
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.79 E-value=0.0042 Score=50.12 Aligned_cols=40 Identities=13% Similarity=0.173 Sum_probs=29.0
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
.|+-.++.|+.|+|||.+.+-.+.+.... +.+++++-|.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~---g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTT---TCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC---CCeEEEEeecC
Confidence 46678889999999998766555554433 45788888765
No 119
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.74 E-value=0.0072 Score=54.05 Aligned_cols=41 Identities=17% Similarity=0.504 Sum_probs=24.0
Q ss_pred CccEEEechhhHhhcc-ccHHHHHHHHHhC-CCCccEEEEEee
Q 022383 175 AIKLLVLDESDEMLSR-GFKDQIYDVYRYL-PPDLQVVLISAT 215 (298)
Q Consensus 175 ~l~~vViDE~h~~~~~-~~~~~i~~i~~~~-~~~~~~v~~SAT 215 (298)
..+++++||+|.+... .....+..++..+ ....++|+.|..
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~ 236 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDR 236 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 5679999999998653 2334444444433 334555554433
No 120
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.69 E-value=0.0041 Score=54.21 Aligned_cols=37 Identities=30% Similarity=0.524 Sum_probs=22.3
Q ss_pred EEEechhhHhhccccHHH-HHHHHHhCCCCccEEEEEee
Q 022383 178 LLVLDESDEMLSRGFKDQ-IYDVYRYLPPDLQVVLISAT 215 (298)
Q Consensus 178 ~vViDE~h~~~~~~~~~~-i~~i~~~~~~~~~~v~~SAT 215 (298)
+||+||+|.+........ +..+.+.. .+..+|+.|..
T Consensus 136 vlilDEi~~l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~ 173 (384)
T 2qby_B 136 IIYLDEVDTLVKRRGGDIVLYQLLRSD-ANISVIMISND 173 (384)
T ss_dssp EEEEETTHHHHHSTTSHHHHHHHHTSS-SCEEEEEECSS
T ss_pred EEEEECHHHhccCCCCceeHHHHhcCC-cceEEEEEECC
Confidence 999999999865432344 55555544 34445544433
No 121
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.013 Score=52.04 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=37.3
Q ss_pred ccccCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHH
Q 022383 30 EAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 30 ~~~~~~~~l~l~~~i~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~ 86 (298)
+|..+|++++-.+..++.|++. .+.+|..++..- +...+.+++.||+|+|||+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHH
Confidence 4667999998888888888763 122333333322 22357899999999999964
No 122
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.63 E-value=0.015 Score=49.48 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=25.9
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEe
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SA 214 (298)
....++++||+|.+........+..+++..+.+.++|+.+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 36789999999998622234555555665555566665433
No 123
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.61 E-value=0.0043 Score=50.12 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.++.+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999653
No 124
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.61 E-value=0.0072 Score=51.61 Aligned_cols=51 Identities=8% Similarity=0.083 Sum_probs=33.0
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhh-----cCCcEEEEcCCCCchHHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII-----KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~-----~~~~~li~~pTG~GKT~~~ 87 (298)
+..+|+++.-.+..++.|.+.- . .| ...+.+. ..+.+++.||+|+|||..+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i-~--~~---~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAV-I--LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHT-H--HH---HHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHH-H--HH---HhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 3457999987778888777641 1 11 1112221 2367999999999999654
No 125
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.60 E-value=0.009 Score=50.68 Aligned_cols=39 Identities=15% Similarity=0.380 Sum_probs=25.7
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
.+-.++|+||+|.+... ....+..++...+.+..+++.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45689999999997433 3445556666665566665544
No 126
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.01 Score=52.09 Aligned_cols=54 Identities=22% Similarity=0.334 Sum_probs=35.4
Q ss_pred cccCcccCCCCHHHHHHHHHCC---CCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQYG---FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~---~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
|..+|++.+=-+..++.|++.= +.+|..++..- +...+.+++.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 5579999987777888777641 11222222211 233588999999999999653
No 127
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.56 E-value=0.014 Score=49.27 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.9
Q ss_pred CcEEEEcCCCCchHHHH
Q 022383 71 RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~ 87 (298)
.++++.||+|+|||...
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999654
No 128
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.52 E-value=0.027 Score=48.49 Aligned_cols=43 Identities=5% Similarity=0.344 Sum_probs=29.7
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEeeCc
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLP 217 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~ 217 (298)
.+.+++|+||+|.+ +......+..+++..+.+..+|+.|-.+.
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 46789999999994 44456667777777766666666665543
No 129
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.48 E-value=0.0079 Score=47.19 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=27.3
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCc
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (298)
.|+=.++.||+|+|||.-.+-.+-+.... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA---QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc---CCeEEEEccc
Confidence 46778999999999996544444443333 3578888876
No 130
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.48 E-value=0.0055 Score=52.37 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=32.3
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHh-----hcCCcEEEEcCCCCchHHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPI-----IKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~-----~~~~~~li~~pTG~GKT~~~ 87 (298)
+..+|++++-.+.+++.|++.- . .|.+ .+.+ ...+.+++.||+|+|||..+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v-~--~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAV-I--LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH-H--HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHH-H--HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 3468999987777777776531 0 0110 1112 12368999999999999654
No 131
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.47 E-value=0.005 Score=53.69 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=14.2
Q ss_pred cEEEEcCCCCchHHHH
Q 022383 72 DVIAQAQSGTGKTSMI 87 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~ 87 (298)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999654
No 132
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.45 E-value=0.013 Score=54.68 Aligned_cols=113 Identities=14% Similarity=0.215 Sum_probs=71.9
Q ss_pred CChHHHHHHHHHhhc--CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceE
Q 022383 55 KPSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQA 132 (298)
Q Consensus 55 ~~~~~Q~~~~~~~~~--~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~ 132 (298)
.++.-|.+++..+.. ....++.|+-|.|||.+.-+ ++..+.. +++|.+|+.+-+..+.+...+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~-~~a~~~~-----~~~vtAP~~~a~~~l~~~~~~--------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQ-LISRIAG-----RAIVTAPAKASTDVLAQFAGE--------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHH-HHHHSSS-----CEEEECSSCCSCHHHHHHHGG---------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHH-HHHHHHh-----CcEEECCCHHHHHHHHHHhhC---------
Confidence 688999999988775 34579999999999954433 3333322 368889998877655543211
Q ss_pred EEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEE
Q 022383 133 HACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (298)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~ 212 (298)
.+-...|+.+. . .....+++|||||=.+ -.+.+..++... ..+++
T Consensus 240 --------------------~i~~~~Pd~~~---~----~~~~~dlliVDEAAaI----p~pll~~ll~~~----~~v~~ 284 (671)
T 2zpa_A 240 --------------------KFRFIAPDALL---A----SDEQADWLVVDEAAAI----PAPLLHQLVSRF----PRTLL 284 (671)
T ss_dssp --------------------GCCBCCHHHHH---H----SCCCCSEEEEETGGGS----CHHHHHHHHTTS----SEEEE
T ss_pred --------------------CeEEeCchhhh---h----CcccCCEEEEEchhcC----CHHHHHHHHhhC----CeEEE
Confidence 02223454432 1 1235899999999665 245555555533 36888
Q ss_pred EeeCc
Q 022383 213 SATLP 217 (298)
Q Consensus 213 SAT~~ 217 (298)
|.|+.
T Consensus 285 ~tTv~ 289 (671)
T 2zpa_A 285 TTTVQ 289 (671)
T ss_dssp EEEBS
T ss_pred EecCC
Confidence 88873
No 133
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.44 E-value=0.075 Score=41.65 Aligned_cols=141 Identities=14% Similarity=0.175 Sum_probs=72.2
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHH-HHHHHHHHHHHhhccCCceEEEEEcCCch-HHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE-LATQTEKVILAIGDFINIQAHACVGGKSV-GEDIRK 147 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~-l~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 147 (298)
...+++..++|.|||.+++-.++..+.. +.+|+|+.-.+. .-..-.+.++++ ++.......+-.. ......
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~---G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~~~~~ 100 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH---GKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQNREA 100 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT---TCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGGGHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCCCcHH
Confidence 4589999999999999887777776655 557888743321 000001112222 2222211111100 000000
Q ss_pred hhcCCcEEEeChHHHHHHHhccCccCCCccEEEechhhHhhcccc--HHHHHHHHHhCCCCccEEEEEeeCchhHHHHHH
Q 022383 148 LEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGF--KDQIYDVYRYLPPDLQVVLISATLPHEILEMTT 225 (298)
Q Consensus 148 ~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~--~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~ 225 (298)
-. ........... ..+.-..+++||+||+-.....++ .+.+..++...+....+|+.+--.++.+.+...
T Consensus 101 ~~-------~~a~~~l~~a~-~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 101 DT-------AACMAVWQHGK-RMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLAD 172 (196)
T ss_dssp HH-------HHHHHHHHHHH-HHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCS
T ss_pred HH-------HHHHHHHHHHH-HHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCc
Confidence 00 00011111111 123336789999999977655543 456667777777666666665556666665543
No 134
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.39 E-value=0.0086 Score=50.59 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=33.3
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHH-HhhcCCcEEEEcCCCCchHHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVM-PIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~-~~~~~~~~li~~pTG~GKT~~~ 87 (298)
+..+|+++.-.+..++.|.+.- ..+..+...... .+..++.+++.||+|+|||...
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v-~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELV-QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH-HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH-HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 3468899876777777776531 101101111111 1235678999999999999654
No 135
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.39 E-value=0.028 Score=47.53 Aligned_cols=39 Identities=13% Similarity=0.234 Sum_probs=25.4
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
...+++||||+|.|.... .+.+...++.-+++..+|+.+
T Consensus 81 ~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 467899999999985443 344555666555555555554
No 136
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.33 E-value=0.016 Score=51.43 Aligned_cols=129 Identities=15% Similarity=0.274 Sum_probs=65.6
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEc--CcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS--PTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL 148 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~--p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (298)
+-++++||+|+|||......+.. +.. .+.+++++. +.+.-+. +.+..++...++.+.....+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~-l~~--~G~kVllv~~D~~r~~a~---eqL~~~~~~~gv~~~~~~~~~d-------- 163 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYF-YKK--RGYKVGLVAADVYRPAAY---DQLLQLGNQIGVQVYGEPNNQN-------- 163 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHH-HHH--TTCCEEEEEECCSCHHHH---HHHHHHHHTTTCCEECCTTCSC--------
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHH--cCCeEEEEecCccchhHH---HHHHHHHHhcCCceeeccccCC--------
Confidence 35788899999999765433322 222 244666655 3333332 2333344444544332211111
Q ss_pred hcCCcEEEeChHHHH-HHHhccCccCCCccEEEechhhHhh---ccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHH
Q 022383 149 EHGVHVVSGTPGRVC-DMIKRKTLRTRAIKLLVLDESDEML---SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMT 224 (298)
Q Consensus 149 ~~~~~ilV~Tp~~l~-~~~~~~~~~~~~l~~vViDE~h~~~---~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~ 224 (298)
|..+. ..+.. ......+++|||++-... +..+...+..+.+...+..-++.++|+.........
T Consensus 164 ----------p~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a 231 (433)
T 3kl4_A 164 ----------PIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLA 231 (433)
T ss_dssp ----------HHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHH
T ss_pred ----------HHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHH
Confidence 21111 11111 122467888888886543 223455666666666556666777887655444444
Q ss_pred H
Q 022383 225 T 225 (298)
Q Consensus 225 ~ 225 (298)
.
T Consensus 232 ~ 232 (433)
T 3kl4_A 232 S 232 (433)
T ss_dssp H
T ss_pred H
Confidence 3
No 137
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.29 E-value=0.02 Score=43.95 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
.+++++.||+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 468999999999999654
No 138
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.043 Score=48.64 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=34.6
Q ss_pred ccccCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 30 EAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 30 ~~~~~~~~l~l~~~i~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
.|..+|++.+--+..++.|.+. .+.+|..++.. -+...+.+++.||+|+|||+.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~---g~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQI---GIDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHH---CCCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhC---CCCCCceEEEECCCCCCHHHHH
Confidence 3456899998777777777663 11222222221 1234578999999999999653
No 139
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.27 E-value=0.0059 Score=48.69 Aligned_cols=40 Identities=10% Similarity=0.098 Sum_probs=27.2
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
.|.-.++.||.|+|||...+-.+ ...... +.+++++.|..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~-~r~~~~--g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRL-RRGIYA--KQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH-HHHHHT--TCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHH-HHHHHc--CCceEEEEecc
Confidence 46667899999999997655444 333332 44788888865
No 140
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.23 E-value=0.038 Score=43.39 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchHHHH
Q 022383 71 RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~ 87 (298)
+++++.||+|+|||...
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999653
No 141
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.23 E-value=0.026 Score=48.40 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=26.7
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
...+++|+||+|.+... -...+..+++..+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEEe
Confidence 35789999999998543 3455666777766666665544
No 142
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.21 E-value=0.042 Score=46.94 Aligned_cols=17 Identities=24% Similarity=0.518 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchHHHH
Q 022383 71 RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~ 87 (298)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 58999999999999654
No 143
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.19 E-value=0.093 Score=41.83 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=22.6
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
..-.+||+||+|.+... ....+...+...+....+|+.|
T Consensus 125 ~~~~vlviDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~t 163 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 163 (250)
T ss_dssp SSSEEEEEETGGGSCHH-HHHHHHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEEECcccccHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 34579999999986332 2344444555444445455444
No 144
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.16 E-value=0.0095 Score=51.72 Aligned_cols=18 Identities=28% Similarity=0.558 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
++.+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999653
No 145
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.14 E-value=0.017 Score=49.57 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=26.1
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEe
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SA 214 (298)
....++++||+|.+... ....+..+++..+....+++.+.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 35579999999987533 34555666666665665665443
No 146
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.052 Score=48.39 Aligned_cols=56 Identities=18% Similarity=0.243 Sum_probs=36.4
Q ss_pred ccccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHH--hhcCCcEEEEcCCCCchHHHH
Q 022383 30 EAITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMP--IIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 30 ~~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~--~~~~~~~li~~pTG~GKT~~~ 87 (298)
.|..+|++.+-.+..++.|++.= ..|. ..-+.+.. +...+.+++.||+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V-~~pl-~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVV-ELPL-LSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHT-HHHH-HCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHH-HHHh-cCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 45578999988888888887741 1111 11122222 234589999999999999643
No 147
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.02 E-value=0.014 Score=51.91 Aligned_cols=55 Identities=24% Similarity=0.380 Sum_probs=35.0
Q ss_pred ccccCcccCCCCHHHHHHHHHCC---CCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 30 EAITSFDAMGIKDDLLRGIYQYG---FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 30 ~~~~~~~~l~l~~~i~~~l~~~~---~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
.|..+|++.+-.+..++.|++.= +.+|..++..- +...+.+++.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 45568999987777777776631 12222222111 234589999999999999653
No 148
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.92 E-value=0.038 Score=49.98 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=27.9
Q ss_pred ccEEEechhhHhhccc----------cHHHHHHHHHhCCCCccEEEEEeeCch
Q 022383 176 IKLLVLDESDEMLSRG----------FKDQIYDVYRYLPPDLQVVLISATLPH 218 (298)
Q Consensus 176 l~~vViDE~h~~~~~~----------~~~~i~~i~~~~~~~~~~v~~SAT~~~ 218 (298)
...+++||+|.+.... ....+..++........++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 4689999999986431 223444555555556667777787544
No 149
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.91 E-value=0.048 Score=44.58 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=29.4
Q ss_pred cCcccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 33 TSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 33 ~~~~~l~l~~~i~~~l~~~~--~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
.+|+++.-.+..++.++++- +..+..+... .+...+.+++.||+|+|||...
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---g~~~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQL---GAKVPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHc---CCCCCceEEEECCCCCCHHHHH
Confidence 46777766666666665521 1111111111 1123578999999999999654
No 150
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.87 E-value=0.041 Score=46.05 Aligned_cols=54 Identities=11% Similarity=0.115 Sum_probs=32.0
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHH-HHHHHHh-hcCCcEEEEcCCCCchHHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQ-QRAVMPI-IKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q-~~~~~~~-~~~~~~li~~pTG~GKT~~~ 87 (298)
+..+|+++.-.+...+.+.+.- . .+.. .+.+..+ ..++.+++.||+|+|||..+
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i-~--~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMV-I--LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHT-H--HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHH-H--hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 3457888876777777776531 1 0000 0011111 13578999999999999654
No 151
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.048 Score=48.17 Aligned_cols=55 Identities=22% Similarity=0.332 Sum_probs=35.9
Q ss_pred ccccCcccCCCCHHHHHHHHHC---CCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 30 EAITSFDAMGIKDDLLRGIYQY---GFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 30 ~~~~~~~~l~l~~~i~~~l~~~---~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
.+..+|++++=-+..++.|++. .+.+|..++..- +...+.+++.||+|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCCchHHHHH
Confidence 4567999998666777777663 123343333222 223578999999999999643
No 152
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.59 E-value=0.0086 Score=50.83 Aligned_cols=18 Identities=17% Similarity=0.390 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
++++++.||+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 589999999999999654
No 153
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.49 E-value=0.17 Score=44.95 Aligned_cols=58 Identities=17% Similarity=0.145 Sum_probs=32.9
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEc--CcHHHHHHHHHHHHHhhccCCceEEE
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS--PTRELATQTEKVILAIGDFINIQAHA 134 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~--p~~~l~~q~~~~~~~~~~~~~~~~~~ 134 (298)
.-++++|++|+|||....-.+. .+.. .+.+++++. |.+.-+ .+.++.++...++.+..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~-~l~~--~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~ 160 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLAR-YFQK--RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFG 160 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH-HHHT--TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEEC
T ss_pred eEEEEECcCCCCHHHHHHHHHH-HHHH--CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEe
Confidence 3578899999999976543332 2222 244566665 444433 23444555555665543
No 154
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.44 E-value=0.032 Score=49.84 Aligned_cols=54 Identities=11% Similarity=0.095 Sum_probs=31.7
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHH-HHHH-HhhcCCcEEEEcCCCCchHHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQ-RAVM-PIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~-~~~~-~~~~~~~~li~~pTG~GKT~~~ 87 (298)
+..+|+++.-.+.+.+.|...-. .|... +.+. .....+.+++.||+|+|||..+
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 45678888766677777665310 01000 0000 1123478999999999999654
No 155
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.44 E-value=0.053 Score=45.74 Aligned_cols=39 Identities=15% Similarity=0.298 Sum_probs=25.0
Q ss_pred CccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEe
Q 022383 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (298)
Q Consensus 175 ~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SA 214 (298)
+-.++||||+|.+.... ...+..+++..+.+..+++.|.
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEeC
Confidence 46899999999975432 3344555566555566666543
No 156
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=95.34 E-value=0.13 Score=39.35 Aligned_cols=73 Identities=16% Similarity=0.139 Sum_probs=55.3
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.++||.|+++..+..+...+++. ++.+..++|+.+..+....+ .+..+|+|+|. .-..++++..+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~------~~~~Gid~~~~ 103 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN------VCARGIDVKQV 103 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC------SCCTTTCCTTE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec------chhcCCCcccC
Confidence 458999999999999999888764 67888999988766554333 25678999994 12356888899
Q ss_pred cEEEech
Q 022383 177 KLLVLDE 183 (298)
Q Consensus 177 ~~vViDE 183 (298)
++||.-+
T Consensus 104 ~~Vi~~d 110 (175)
T 2rb4_A 104 TIVVNFD 110 (175)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 9988543
No 157
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.27 E-value=0.081 Score=45.72 Aligned_cols=51 Identities=8% Similarity=0.062 Sum_probs=29.0
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHh-----hcCCcEEEEcCCCCchHHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPI-----IKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~-----~~~~~~li~~pTG~GKT~~~ 87 (298)
+..+|+++.-.+..++.|...- . .+ .-.+.+ ...+.+++.||+|+|||..+
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v-~--~~---~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAV-I--LP---VKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHT-H--HH---HHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH-H--HH---HhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 3457777765555666655421 0 00 001111 12367999999999999654
No 158
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.18 E-value=0.56 Score=35.21 Aligned_cols=74 Identities=12% Similarity=0.164 Sum_probs=55.7
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.++||.|+++..+..+.+.++.. ++.+..++|+.+..+....+ .+..+|+|+|. .-..++++..+
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gld~~~~ 104 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD------VAARGIDIENI 104 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTTTCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC------hhhcCCchhcC
Confidence 347999999999999999988775 67888999987766554333 24678999994 12346788889
Q ss_pred cEEEechh
Q 022383 177 KLLVLDES 184 (298)
Q Consensus 177 ~~vViDE~ 184 (298)
++||.-+.
T Consensus 105 ~~Vi~~~~ 112 (163)
T 2hjv_A 105 SLVINYDL 112 (163)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 99887544
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.15 E-value=0.16 Score=43.83 Aligned_cols=39 Identities=13% Similarity=0.239 Sum_probs=23.8
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
....++||||+|.+... ....+...++..+.+..+|+.+
T Consensus 118 ~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEEe
Confidence 45679999999997433 2344455555554444444444
No 160
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.10 E-value=0.11 Score=45.33 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
.+++++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 478999999999999654
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.06 E-value=0.033 Score=46.90 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=25.5
Q ss_pred CcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 34 SFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 34 ~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
+|+++--.+...+.+.+. +.. ....++++.||+|+|||...
T Consensus 15 ~~~~~~g~~~~~~~l~~~-l~~------------~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 15 TLDEVVGQDEVIQRLKGY-VER------------KNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp SGGGSCSCHHHHHHHHTT-TTT------------TCCCCEEEESSSSSSHHHHH
T ss_pred CHHHHhCCHHHHHHHHHH-HhC------------CCCCeEEEECcCCcCHHHHH
Confidence 456655555666665543 110 12236999999999999654
No 162
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.99 E-value=0.14 Score=44.27 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999996543
No 163
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.95 E-value=0.18 Score=38.11 Aligned_cols=74 Identities=12% Similarity=0.118 Sum_probs=55.3
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.++||.|+++.-+..+...+++. ++.+..++|+.+..+....+ .+..+|+|+|. .-..++++..+
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~G~d~~~~ 99 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD------LLARGIDVQQV 99 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG------GGTTTCCCCSC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC------hhhcCCCcccC
Confidence 347999999999999999988764 67888899987766554333 25678999994 12346788888
Q ss_pred cEEEechh
Q 022383 177 KLLVLDES 184 (298)
Q Consensus 177 ~~vViDE~ 184 (298)
++||.-+.
T Consensus 100 ~~Vi~~~~ 107 (165)
T 1fuk_A 100 SLVINYDL 107 (165)
T ss_dssp SEEEESSC
T ss_pred CEEEEeCC
Confidence 98887543
No 164
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.95 E-value=0.16 Score=40.40 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=28.2
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (298)
..|.-+++.||+|+|||......+...... +..++++.... ...++...+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~v~~~~~~~-~~~~~~~~~~~ 72 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GDPCIYVTTEE-SRDSIIRQAKQ 72 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TCCEEEEESSS-CHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CCeEEEEEccc-CHHHHHHHHHH
Confidence 356789999999999995433222122211 23566665322 23444444443
No 165
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.95 E-value=0.097 Score=46.85 Aligned_cols=142 Identities=16% Similarity=0.186 Sum_probs=65.7
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHH--
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED-- 144 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 144 (298)
+..|.-+++.|++|+|||.-.+-.+.+..... +..++|+..-.. ..++..++..........- ...|.....+.
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~s-~~~l~~r~~~~~~~~~~~~-l~~g~l~~~~~~~ 275 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEMS-AQQLVMRMLCAEGNINAQN-LRTGKLTPEDWGK 275 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSSC-HHHHHHHHHHHHHTCCHHH-HHTSCCCHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCCC-HHHHHHHHHHHHcCCCHHH-HhcCCCCHHHHHH
Confidence 34567789999999999955443333332221 335777764321 2344444321100101000 00111121111
Q ss_pred ----HHHhhcCCcEEEe-----ChHHHHHHHhccCccCCCccEEEechhhHhhccc-----cHHHHHHHHHhCC-----C
Q 022383 145 ----IRKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRG-----FKDQIYDVYRYLP-----P 205 (298)
Q Consensus 145 ----~~~~~~~~~ilV~-----Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~-----~~~~i~~i~~~~~-----~ 205 (298)
...+. ..++.+. |.+.+...++.- ..-..+++||||+.+.+.... ....+..+.+.+. .
T Consensus 276 ~~~a~~~l~-~~~l~i~d~~~~s~~~i~~~~~~l-~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~ 353 (454)
T 2r6a_A 276 LTMAMGSLS-NAGIYIDDTPSIRVSDIRAKCRRL-KQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALAREL 353 (454)
T ss_dssp HHHHHHHHH-SSCEEEECCTTCCHHHHHHHHHHH-HTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHH-HHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 11122 2345553 344444433321 111368999999999986432 2233333333321 2
Q ss_pred CccEEEEEe
Q 022383 206 DLQVVLISA 214 (298)
Q Consensus 206 ~~~~v~~SA 214 (298)
++.++++|-
T Consensus 354 ~i~vi~~sq 362 (454)
T 2r6a_A 354 EVPVIALSQ 362 (454)
T ss_dssp TCCEEEEEC
T ss_pred CCeEEEEec
Confidence 566777765
No 166
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.91 E-value=0.035 Score=58.04 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=28.4
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (298)
.++++++.+|+|+|||....-.+.+... .+.+++|+.....
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccc
Confidence 3689999999999999665444433332 2557888876543
No 167
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.91 E-value=0.11 Score=45.57 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=14.4
Q ss_pred CCcEEE--EcCCCCchHHHH
Q 022383 70 GRDVIA--QAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li--~~pTG~GKT~~~ 87 (298)
+..+++ .||.|+|||...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHH
Confidence 346888 899999999653
No 168
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.79 E-value=0.15 Score=40.43 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=54.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.++||.|+++.-+..+.+.+.+. ++.+..++|+.+..++...+ .+..+|+|+|. +-..++++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~------~~~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD------VAARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT------TTTCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC------hhhcCCCCccC
Confidence 347999999999999999988775 67888999998776554333 25678999994 23357888899
Q ss_pred cEEEe
Q 022383 177 KLLVL 181 (298)
Q Consensus 177 ~~vVi 181 (298)
++||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 98884
No 169
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.72 E-value=0.033 Score=47.17 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
...+++.||+|+|||...
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 378999999999999654
No 170
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.69 E-value=0.086 Score=47.04 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=54.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHH----
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED---- 144 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 144 (298)
.|.-+++.|++|+|||.-.+-.+.+..... +..++|++.- .-..|+..++.......+..- ...|.....+.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~-l~~g~l~~~~~~~~~ 274 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLE-MPAAQLTLRMMCSEARIDMNR-VRLGQLTDRDFSRLV 274 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESS-SCHHHHHHHHHHHHTTCCTTT-CCGGGCCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECC-CCHHHHHHHHHHHHcCCCHHH-HhCCCCCHHHHHHHH
Confidence 456789999999999954443333333221 3357776642 223444444332211111100 00122222211
Q ss_pred --HHHhhcCCcEEEe-----ChHHHHHHHhccCccCCCccEEEechhhHhhc
Q 022383 145 --IRKLEHGVHVVSG-----TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (298)
Q Consensus 145 --~~~~~~~~~ilV~-----Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~ 189 (298)
...+. ...+.+- |++.+...++.-. .-..+++||||..+.+..
T Consensus 275 ~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~-~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 275 DVASRLS-EAPIYIDDTPDLTLMEVRARARRLV-SQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHH-HHSCCCEEEEECGGGCBC
T ss_pred HHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEEcChhhcCC
Confidence 11122 2355553 3445544333210 012589999999999864
No 171
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=94.61 E-value=0.28 Score=38.22 Aligned_cols=72 Identities=22% Similarity=0.259 Sum_probs=54.6
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCcc
Q 022383 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (298)
Q Consensus 102 ~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~ 177 (298)
.++||.|+++.-+..+.+.++.. ++.+..++|+.+..+....+ .+..+|+|+|. .+ ..++++..++
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~-~~Gldi~~v~ 124 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VA-SKGLDFPAIQ 124 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HH-HTTCCCCCCS
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----ch-hcCCCcccCC
Confidence 47999999999999999988775 67888999987766554333 25679999993 22 2467888899
Q ss_pred EEEech
Q 022383 178 LLVLDE 183 (298)
Q Consensus 178 ~vViDE 183 (298)
+||.-+
T Consensus 125 ~VI~~d 130 (191)
T 2p6n_A 125 HVINYD 130 (191)
T ss_dssp EEEESS
T ss_pred EEEEeC
Confidence 888644
No 172
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.46 E-value=0.55 Score=43.00 Aligned_cols=111 Identities=7% Similarity=0.060 Sum_probs=73.2
Q ss_pred chHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEe
Q 022383 82 GKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSG 157 (298)
Q Consensus 82 GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~ 157 (298)
.+....+-.+...+.....+.++||.|+++.-+..+.+.+++... .++.+..++|+....+....+ .+..+|+|+
T Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLva 398 (563)
T 3i5x_A 320 NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVC 398 (563)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEE
T ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 333333444444444434456899999999999999999987643 267888899988766554333 256899999
Q ss_pred ChHHHHHHHhccCccCCCccEEEechhhHhhccccHHHHHHHHHhC
Q 022383 158 TPGRVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (298)
Q Consensus 158 Tp~~l~~~~~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~ 203 (298)
|. .-..++++.++++||.-..- .+....++.+-+--
T Consensus 399 T~------~~~~GiDip~v~~VI~~~~p----~s~~~y~Qr~GRag 434 (563)
T 3i5x_A 399 TD------VGARGMDFPNVHEVLQIGVP----SELANYIHRIGRTA 434 (563)
T ss_dssp CG------GGTSSCCCTTCCEEEEESCC----SSTTHHHHHHTTSS
T ss_pred cc------hhhcCCCcccCCEEEEECCC----CchhhhhhhcCccc
Confidence 96 23357889999998865542 23344445444433
No 173
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.43 E-value=0.07 Score=47.69 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
.++++.||+|+|||...-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 479999999999996543
No 174
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=94.41 E-value=0.18 Score=38.56 Aligned_cols=74 Identities=11% Similarity=0.107 Sum_probs=55.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.++||.|+++..+..+.+.++.. ++.+..++|+.+..+....+ .+..+|+|+|.- -..++++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~------~~~Gldi~~~ 100 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL------FGRGMDIERV 100 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC------CSTTCCGGGC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc------hhcCcchhhC
Confidence 347999999999999999988775 67888899987766554333 256789999951 2346778888
Q ss_pred cEEEechh
Q 022383 177 KLLVLDES 184 (298)
Q Consensus 177 ~~vViDE~ 184 (298)
++||.-+.
T Consensus 101 ~~Vi~~d~ 108 (172)
T 1t5i_A 101 NIAFNYDM 108 (172)
T ss_dssp SEEEESSC
T ss_pred CEEEEECC
Confidence 88886544
No 175
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.40 E-value=0.07 Score=45.75 Aligned_cols=51 Identities=25% Similarity=0.221 Sum_probs=30.2
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 121 (298)
+..|.-+++.|++|+|||.-.+-.+.+... .+..++|++.- .-..|+..++
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE-ms~~ql~~Rl 93 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE-MSAEQLALRA 93 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS-SCHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC-CCHHHHHHHH
Confidence 345567899999999999544433333322 24467777642 2244554444
No 176
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.28 E-value=0.095 Score=47.74 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=26.2
Q ss_pred CCccEEEechhhHhhccc--cHHHHHHHHHhCCCCccEEEEEeeC
Q 022383 174 RAIKLLVLDESDEMLSRG--FKDQIYDVYRYLPPDLQVVLISATL 216 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~--~~~~i~~i~~~~~~~~~~v~~SAT~ 216 (298)
....+++|||+|.+.... ....+..+++.. ..++|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCC
Confidence 455799999999986532 224444555443 45677777764
No 177
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.13 E-value=0.19 Score=42.60 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=31.6
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (298)
+..|.-+++.|++|+|||.-.+-.+.+.... +..++|++-- .-..|+..++..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEECC-CCHHHHHHHHHH
Confidence 4456779999999999995444333333322 2467777643 334555555443
No 178
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.91 E-value=0.49 Score=39.40 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=17.6
Q ss_pred hhcCCcEEEEcCCCCchHHHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~ 88 (298)
+..|.-+++.||+|+|||....
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~ 53 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVR 53 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHH
Confidence 4467889999999999995443
No 179
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=93.90 E-value=0.83 Score=42.06 Aligned_cols=88 Identities=7% Similarity=0.092 Sum_probs=63.3
Q ss_pred HHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHH
Q 022383 90 TVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDM 165 (298)
Q Consensus 90 ~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~ 165 (298)
.+...+.....+.++||.|+++.-+..+.+.+++... .++.+..++|+....+....+ .+..+|+|+|.
T Consensus 277 ~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~------ 349 (579)
T 3sqw_A 277 HIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD------ 349 (579)
T ss_dssp HHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG------
T ss_pred HHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc------
Confidence 3444444333456899999999999999999987643 267888899998766554333 25678999996
Q ss_pred HhccCccCCCccEEEechh
Q 022383 166 IKRKTLRTRAIKLLVLDES 184 (298)
Q Consensus 166 ~~~~~~~~~~l~~vViDE~ 184 (298)
.-..++++.++++||.-..
T Consensus 350 ~~~~GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 350 VGARGMDFPNVHEVLQIGV 368 (579)
T ss_dssp GGTSSCCCTTCCEEEEESC
T ss_pred hhhcCCCcccCCEEEEcCC
Confidence 2335788999999887654
No 180
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.82 E-value=0.16 Score=48.76 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=34.7
Q ss_pred cccCcccCCCCHHHHHHHHHCC-CC--CChHHHHHHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQYG-FE--KPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~-~~--~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
+..+|++++..+..++.|++.- +. .|..++.. .+...+.+++.||.|+|||+.+
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~---g~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF---GMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS---CCCCCSCCEEESSTTSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc---CCCCCceEEEecCCCCCchHHH
Confidence 4568999988888888887742 11 11111100 0123468999999999999643
No 181
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=93.78 E-value=0.23 Score=38.39 Aligned_cols=90 Identities=13% Similarity=0.183 Sum_probs=52.6
Q ss_pred CCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHH---Hh-hcCCcEE
Q 022383 80 GTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KL-EHGVHVV 155 (298)
Q Consensus 80 G~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~il 155 (298)
...|-. .+.-++... ..+.++||.|+++.-+..+.+.++.. ++.+..++|+.+..+... .. .+..+|+
T Consensus 29 ~~~K~~-~L~~ll~~~---~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vL 100 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNAT---GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPIL 100 (185)
T ss_dssp GGGHHH-HHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEE
T ss_pred cHHHHH-HHHHHHHhc---CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 456654 333444432 23457999999999999999988764 678888888766544322 22 2567899
Q ss_pred EeChHHHHHHHhccCccCCCccEEEech
Q 022383 156 SGTPGRVCDMIKRKTLRTRAIKLLVLDE 183 (298)
Q Consensus 156 V~Tp~~l~~~~~~~~~~~~~l~~vViDE 183 (298)
|+|. .+ ..++++..+++||.-+
T Consensus 101 vaT~-~~-----~~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 101 VATA-VA-----ARGLDISNVKHVINFD 122 (185)
T ss_dssp EEEC------------CCCSBSEEEESS
T ss_pred EEcC-hh-----hcCCCcccCCEEEEeC
Confidence 9994 22 2356778888887643
No 182
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.76 E-value=0.31 Score=39.06 Aligned_cols=42 Identities=17% Similarity=0.057 Sum_probs=25.2
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHhhccC---CCCeEEEEEcC
Q 022383 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSP 109 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~---~~~~~~lil~p 109 (298)
..|.-+.+.||+|+|||......+...+... ..+..++++.-
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 3567899999999999965544333322211 01235677654
No 183
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=93.71 E-value=0.48 Score=41.33 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=55.7
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCC
Q 022383 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (298)
Q Consensus 100 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~ 175 (298)
.+.++||.|++++-+..+.+.+++. ++.+..++|+.+..+....+ .+..+|+|+|. . -..++++..
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~-~~~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----V-AARGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----H-HHTTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----h-hhcCCCccc
Confidence 4568999999999999999988764 67888999988766554333 25678999995 2 234688889
Q ss_pred ccEEEec
Q 022383 176 IKLLVLD 182 (298)
Q Consensus 176 l~~vViD 182 (298)
+++||.-
T Consensus 345 v~~Vi~~ 351 (417)
T 2i4i_A 345 VKHVINF 351 (417)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 9988853
No 184
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.61 E-value=0.16 Score=41.07 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=17.9
Q ss_pred hhcCCcEEEEcCCCCchHHHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~ 88 (298)
+..|.-+.+.||+|+|||....
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHH
Confidence 4467889999999999996543
No 185
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.49 E-value=1.4 Score=42.20 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchHHH
Q 022383 71 RDVIAQAQSGTGKTSM 86 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~ 86 (298)
+.+++.||.|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 6899999999999964
No 186
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.46 E-value=0.19 Score=43.62 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=25.3
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTR 111 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~ 111 (298)
.|.-+++.+|+|+|||...+-.+.+.... +..++|+..-.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GGTCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CCeEEEEECCC
Confidence 34678999999999996544333333222 33677777543
No 187
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.35 E-value=0.11 Score=44.87 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=25.5
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (298)
.|.-+++.||+|+|||...+ .+...+.. .+..++|+..-..
T Consensus 60 ~G~i~~I~GppGsGKSTLal-~la~~~~~--~gg~VlyId~E~s 100 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLAL-HAIAEAQK--MGGVAAFIDAEHA 100 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHH-HHHHHHHH--TTCCEEEEESSCC
T ss_pred CCcEEEEECCCCCCHHHHHH-HHHHHHHh--cCCeEEEEecccc
Confidence 35678999999999995433 33333322 2346788875443
No 188
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=93.35 E-value=2.7 Score=35.93 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=57.9
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCC
Q 022383 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (298)
Q Consensus 100 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~ 175 (298)
.+.++||.|+++.-+..+.+.+++. +..+..++|+.+..++...+ .+..+|+|+|. .-..++++.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN------VLARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG------GGSSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhcCCCccc
Confidence 3458999999999999999988765 57788899987766554333 24678999995 2345788999
Q ss_pred ccEEEechhh
Q 022383 176 IKLLVLDESD 185 (298)
Q Consensus 176 l~~vViDE~h 185 (298)
+++||.-+..
T Consensus 312 ~~~Vi~~~~p 321 (395)
T 3pey_A 312 VSMVVNYDLP 321 (395)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEcCCC
Confidence 9999876553
No 189
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.18 E-value=0.67 Score=39.27 Aligned_cols=55 Identities=13% Similarity=0.067 Sum_probs=31.4
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhcc---CCCCeEEEEEcCcHHH-HHHHHHHHHHh
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDT---SSREVQALILSPTREL-ATQTEKVILAI 124 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~---~~~~~~~lil~p~~~l-~~q~~~~~~~~ 124 (298)
|.-+++.||+|+|||...+..+.+.... ...+..++|+.-...+ ..++...++++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999996544434332211 0113478888754332 34444444443
No 190
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.16 E-value=0.11 Score=43.92 Aligned_cols=90 Identities=9% Similarity=0.094 Sum_probs=50.2
Q ss_pred cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcC
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHG 151 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (298)
-+.+.+|+|+|||...+-.+.+.... ..+.+++|+..-..+... ++++++-..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~-g~g~~vlyId~E~s~~~~---ra~~lGvd~----------------------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ-YPDAVCLFYDSEFGITPA---YLRSMGVDP----------------------- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH-CTTCEEEEEESSCCCCHH---HHHHTTCCG-----------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEeccchhhHH---HHHHhCCCH-----------------------
Confidence 57899999999996655444443322 124478888865554322 244443211
Q ss_pred CcEEEeChHHHHHH----Hhc-cCccCCCccEEEechhhHhh
Q 022383 152 VHVVSGTPGRVCDM----IKR-KTLRTRAIKLLVLDESDEML 188 (298)
Q Consensus 152 ~~ilV~Tp~~l~~~----~~~-~~~~~~~l~~vViDE~h~~~ 188 (298)
.++++..|..+... +.. ..+.-..+++||||-+..+.
T Consensus 83 d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 13444443333222 211 11334578999999988875
No 191
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=92.97 E-value=0.14 Score=47.00 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.|..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999654
No 192
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.94 E-value=0.4 Score=43.08 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=31.2
Q ss_pred cccCcccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHh--hcCCcEEEEcCCCCchHHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPI--IKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~--~~~~~~~Q~~~~~~~--~~~~~~li~~pTG~GKT~~~ 87 (298)
+..+|+++.-.+..++.+++.- +..+. .+..+ .-.+.+++.||+|+|||...
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~-----~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPS-----KFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTH-----HHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChH-----HHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 3458888876666666665531 11111 12221 12367999999999999654
No 193
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.65 E-value=0.19 Score=44.76 Aligned_cols=51 Identities=16% Similarity=0.064 Sum_probs=30.5
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 121 (298)
+..|.-+++.|++|+|||.-.+-.+.+.... +..++|++-- .-..|+..++
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlE-ms~~ql~~R~ 244 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE-MGKKENIKRL 244 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSS-SCTTHHHHHH
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECC-CCHHHHHHHH
Confidence 3355679999999999996544444443333 4467777643 2233444443
No 194
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=92.49 E-value=0.42 Score=40.18 Aligned_cols=73 Identities=22% Similarity=0.293 Sum_probs=54.7
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.++||.|+++.-++.+.+.+... ++.+..++|+.+..++...+ .+..+|+|+|. +-..++++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~------va~~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD------VAARGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS------TTTCSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec------hhhcCccccce
Confidence 447999999999999988877654 67889999997766554333 25678999994 23357888889
Q ss_pred cEEEech
Q 022383 177 KLLVLDE 183 (298)
Q Consensus 177 ~~vViDE 183 (298)
++||.=+
T Consensus 98 ~~VI~~d 104 (300)
T 3i32_A 98 DLVVHYR 104 (300)
T ss_dssp SEEEESS
T ss_pred eEEEEcC
Confidence 9887533
No 195
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=92.41 E-value=1.3 Score=40.97 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=56.5
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCC
Q 022383 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (298)
Q Consensus 100 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~ 175 (298)
.+..+||.|+++.-+.++.+.+++. ++.+..++++.+..+....+ .+..+|+|+|. .-..+++..+
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~------a~~~GID~p~ 335 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV------AFGMGIDKPD 335 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT------TSCTTCCCSC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhcCCCccc
Confidence 4568999999999999999988775 67889999998776554333 25678999995 2235678888
Q ss_pred ccEEEech
Q 022383 176 IKLLVLDE 183 (298)
Q Consensus 176 l~~vViDE 183 (298)
+++||.-.
T Consensus 336 V~~VI~~~ 343 (591)
T 2v1x_A 336 VRFVIHHS 343 (591)
T ss_dssp EEEEEESS
T ss_pred ccEEEEeC
Confidence 88888543
No 196
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.35 E-value=0.14 Score=44.03 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=25.5
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCc
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (298)
.|+-+++.||+|+|||...+..+...... +..++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECC
Confidence 45779999999999996544433333222 3467777643
No 197
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=91.77 E-value=0.63 Score=44.48 Aligned_cols=17 Identities=29% Similarity=0.452 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
++++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999996543
No 198
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.76 E-value=0.14 Score=44.19 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=25.9
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCc
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPT 110 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~ 110 (298)
.|+-+++.|++|+|||...+-.+...... +..++|+...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCC
Confidence 45779999999999996554444333322 3367887753
No 199
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=91.72 E-value=5.7 Score=37.19 Aligned_cols=91 Identities=16% Similarity=0.200 Sum_probs=65.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh---h-cCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.++||.|+++..+..+.+.++.. ++++..++|+.+..+....+ . +..+|+|+|. +-..++++..+
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~------~l~~GlDip~v 514 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPEV 514 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC------CCSTTCCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc------hhhCCcccCCC
Confidence 458999999999999999988775 67888889887765554432 2 5689999995 23457889999
Q ss_pred cEEEechhhHhhc-cccHHHHHHHHH
Q 022383 177 KLLVLDESDEMLS-RGFKDQIYDVYR 201 (298)
Q Consensus 177 ~~vViDE~h~~~~-~~~~~~i~~i~~ 201 (298)
++||+-|++...- ......++.+-+
T Consensus 515 ~lVi~~d~d~~G~p~s~~~~iQr~GR 540 (661)
T 2d7d_A 515 SLVAILDADKEGFLRSERSLIQTIGR 540 (661)
T ss_dssp EEEEETTTTCCTTTTSHHHHHHHHHT
T ss_pred CEEEEeCcccccCCCCHHHHHHHhCc
Confidence 9999999876432 122344444443
No 200
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=91.55 E-value=1.2 Score=39.26 Aligned_cols=70 Identities=13% Similarity=0.178 Sum_probs=54.7
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh----cCCcEEEeChHHHHHHHhccCccCCCccE
Q 022383 103 QALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRAIKL 178 (298)
Q Consensus 103 ~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~ 178 (298)
.+||.|+++.-+..+.+.+++. ++.+..++|+....++...+. +..+|+|+|. +-..++++.++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~------v~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS------VASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG------GGTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch------hhhCCCCcccCCE
Confidence 3999999999999999988765 678889999987665544332 5678999996 3345788999999
Q ss_pred EEec
Q 022383 179 LVLD 182 (298)
Q Consensus 179 vViD 182 (298)
||.-
T Consensus 372 VI~~ 375 (434)
T 2db3_A 372 VINY 375 (434)
T ss_dssp EEES
T ss_pred EEEE
Confidence 8853
No 201
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=91.43 E-value=0.78 Score=44.18 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.++.++++||+|+|||...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4678999999999999643
No 202
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=91.43 E-value=0.96 Score=39.12 Aligned_cols=73 Identities=11% Similarity=0.102 Sum_probs=55.2
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.++||.|+++.-+..+.+.+++. ++.+..++|+.+..+....+ .+..+|+|+|. .-..++++..+
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~------~~~~Gidip~~ 327 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD------LLTRGIDIQAV 327 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS------CSSSSCCCTTE
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC------ccccCCCccCC
Confidence 348999999999999999988876 57788889987765544332 24578999995 23357888899
Q ss_pred cEEEech
Q 022383 177 KLLVLDE 183 (298)
Q Consensus 177 ~~vViDE 183 (298)
++||.-+
T Consensus 328 ~~Vi~~~ 334 (400)
T 1s2m_A 328 NVVINFD 334 (400)
T ss_dssp EEEEESS
T ss_pred CEEEEeC
Confidence 9888643
No 203
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=91.29 E-value=0.79 Score=39.75 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=56.1
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.++||.|+++.-+..+.+.+++. +..+..++|+.+..+....+ .+..+|+|+|. .-..++++.++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN------VCARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG------GGTSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC------ccccCCCccCC
Confidence 348999999999999999988875 57788899988766554333 25678999995 23457889999
Q ss_pred cEEEech
Q 022383 177 KLLVLDE 183 (298)
Q Consensus 177 ~~vViDE 183 (298)
++||.-+
T Consensus 336 ~~Vi~~~ 342 (412)
T 3fht_A 336 SVVINFD 342 (412)
T ss_dssp EEEEESS
T ss_pred CEEEEEC
Confidence 9988543
No 204
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=91.22 E-value=6 Score=33.21 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=23.3
Q ss_pred ccEEEechhhHhhc---cccHHHHHHHHHhCCCCccEEEEE
Q 022383 176 IKLLVLDESDEMLS---RGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 176 l~~vViDE~h~~~~---~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
--+|||||+|.+.. ..+...+..+....+ +..+|+.+
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~~~i~~g 177 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RIKFIMSG 177 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TEEEEEEE
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCC-CeEEEEEc
Confidence 45899999999864 345566666666542 44444433
No 205
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.07 E-value=0.44 Score=46.26 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
..+++++||+|+|||...
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 358999999999999643
No 206
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=91.04 E-value=3.5 Score=35.30 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=56.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.++||.|+++.-+..+.+.+++. ++.+..++|+.+..+....+ .+..+|+|+|. .-..++++..+
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~------~~~~Gidi~~~ 319 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN------LFGRGMDIERV 319 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC------CCSSCBCCTTE
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC------hhhcCCCcccC
Confidence 458999999999999999988765 67788899987765544333 24678999994 22357888999
Q ss_pred cEEEechh
Q 022383 177 KLLVLDES 184 (298)
Q Consensus 177 ~~vViDE~ 184 (298)
++||..+.
T Consensus 320 ~~Vi~~~~ 327 (391)
T 1xti_A 320 NIAFNYDM 327 (391)
T ss_dssp EEEEESSC
T ss_pred CEEEEeCC
Confidence 99987654
No 207
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=90.95 E-value=1.7 Score=39.05 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=39.4
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhc
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGD 126 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~ 126 (298)
.|....+.+-||+|||+...-.+ ... +..+|||+|+...+.++++.++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-~~~-----~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-ERH-----AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-HHS-----SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-HHh-----CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 45678999999999997543222 211 22589999999999999999988754
No 208
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.83 E-value=0.23 Score=39.91 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=31.3
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (298)
..|.-+++.||+|+|||...+-.+...... +..++|+.-. ....++.+.+..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e-~~~~~~~~~~~~ 72 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALE-EHPVQVRQNMAQ 72 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEcc-CCHHHHHHHHHH
Confidence 356789999999999996544333333222 3357777643 234555555543
No 209
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=90.74 E-value=0.36 Score=48.53 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=29.8
Q ss_pred EEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHH
Q 022383 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRE 112 (298)
Q Consensus 73 ~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~ 112 (298)
-+|.|+.|||||.+.+--+...+.....+.++++|+|...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc
Confidence 3789999999998766656555555444568999999764
No 210
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.71 E-value=0.26 Score=50.96 Aligned_cols=90 Identities=16% Similarity=0.265 Sum_probs=54.5
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE 149 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (298)
|+.+.+.+|.|+|||...+..+-+.... +..++|+.+-.+|-... +++++-+++
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~---g~~~~~i~~e~~~~~~~---~~~~Gv~~~-------------------- 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPIY---ARKLGVDID-------------------- 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHHH---HHHTTCCGG--------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEEecCCCCCHHH---HHHcCCCHH--------------------
Confidence 4779999999999997755544333222 55789998877665554 445532221
Q ss_pred cCCcEEEeChH---HHHHHHhccCccCCCccEEEechhhHhhc
Q 022383 150 HGVHVVSGTPG---RVCDMIKRKTLRTRAIKLLVLDESDEMLS 189 (298)
Q Consensus 150 ~~~~ilV~Tp~---~l~~~~~~~~~~~~~l~~vViDE~h~~~~ 189 (298)
+++|.-|+ +.+..... .+.-..+++||||.+..+..
T Consensus 1485 ---~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 ---NLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ---GCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCC
T ss_pred ---HeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCc
Confidence 35555552 22222221 22234678999999877653
No 211
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=90.65 E-value=1.1 Score=38.93 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=55.0
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCcc
Q 022383 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (298)
Q Consensus 102 ~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~ 177 (298)
.++||.|+++.-+..+.+.+++. ++.+..++|+.+..+....+ .+..+|+|+|. .-..++++..++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidi~~v~ 346 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD------VWARGLDVPQVS 346 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG------GGSSSCCCTTEE
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC------hhhCcCCcccCC
Confidence 48999999999999999988765 57788899987765544333 25678999995 234578899999
Q ss_pred EEEech
Q 022383 178 LLVLDE 183 (298)
Q Consensus 178 ~vViDE 183 (298)
+||.-+
T Consensus 347 ~Vi~~~ 352 (410)
T 2j0s_A 347 LIINYD 352 (410)
T ss_dssp EEEESS
T ss_pred EEEEEC
Confidence 988643
No 212
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=90.52 E-value=0.42 Score=41.17 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCCchHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~ 88 (298)
.+.++++.||+|+|||..+-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999997543
No 213
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=90.44 E-value=0.59 Score=50.69 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHCCCCCChHHH-HHH---HHHhhcCCcEEEEcCCCCchHHHHHHHH--HHhhccCCCCeEEEEEcCcHHH
Q 022383 40 IKDDLLRGIYQYGFEKPSAIQ-QRA---VMPIIKGRDVIAQAQSGTGKTSMIALTV--CQTVDTSSREVQALILSPTREL 113 (298)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q-~~~---~~~~~~~~~~li~~pTG~GKT~~~~~~~--~~~~~~~~~~~~~lil~p~~~l 113 (298)
+...+.+.+.+.++. +.+.+ ..+ +..+..++.++++||||+|||.++-..+ +..+.. ....+.++-|..--
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La~al~~l~~--~~~~~~~inpk~~t 966 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVIDAMAIFDG--HANVVYVIDTKVLT 966 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHHHHHHHHTC--CEEEEEEECTTTSC
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHHHHHHHhcC--CCceEEEeCCCCCC
Confidence 345677777888876 45544 333 3345567899999999999998865332 233322 23345556564333
Q ss_pred HHH
Q 022383 114 ATQ 116 (298)
Q Consensus 114 ~~q 116 (298)
..|
T Consensus 967 ~~e 969 (2695)
T 4akg_A 967 KES 969 (2695)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 214
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=90.41 E-value=9.1 Score=35.86 Aligned_cols=77 Identities=13% Similarity=0.133 Sum_probs=59.3
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh---h-cCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL---E-HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.++||.|+++..+..+.+.+.+. ++.+..++|+.+..+....+ . +..+|+|+|. +-..++++..+
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~------~l~~GlDip~v 508 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN------LLREGLDIPEV 508 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC------CCCTTCCCTTE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC------hhhcCccCCCC
Confidence 458999999999999999988775 57788888887766554432 2 4679999995 12457888999
Q ss_pred cEEEechhhHh
Q 022383 177 KLLVLDESDEM 187 (298)
Q Consensus 177 ~~vViDE~h~~ 187 (298)
++||+=+++..
T Consensus 509 ~lVI~~d~d~~ 519 (664)
T 1c4o_A 509 SLVAILDADKE 519 (664)
T ss_dssp EEEEETTTTSC
T ss_pred CEEEEeCCccc
Confidence 99998888654
No 215
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.39 E-value=0.88 Score=41.27 Aligned_cols=40 Identities=15% Similarity=0.099 Sum_probs=26.0
Q ss_pred HHHHHHCCCCCChHHHHHHHH-HhhcCCcEEEEcCCCCchHHH
Q 022383 45 LRGIYQYGFEKPSAIQQRAVM-PIIKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 45 ~~~l~~~~~~~~~~~Q~~~~~-~~~~~~~~li~~pTG~GKT~~ 86 (298)
...|.+.|. +++.+...+. .+..|..++++||||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344556553 2233333333 356788999999999999954
No 216
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=90.28 E-value=1.2 Score=40.57 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=55.7
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+..+||.|+++.-++.+.+.+++. ++.+..++|+.+..+..... .+..+|+|+|. .-..++++.++
T Consensus 236 ~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~------a~~~GiD~p~v 305 (523)
T 1oyw_A 236 GKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV------AFGMGINKPNV 305 (523)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT------TSCTTTCCTTC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec------hhhCCCCccCc
Confidence 457899999999999999988875 67888999998765544332 25679999996 22356788889
Q ss_pred cEEEech
Q 022383 177 KLLVLDE 183 (298)
Q Consensus 177 ~~vViDE 183 (298)
++||.-.
T Consensus 306 ~~VI~~~ 312 (523)
T 1oyw_A 306 RFVVHFD 312 (523)
T ss_dssp CEEEESS
T ss_pred cEEEEEC
Confidence 9888643
No 217
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.26 E-value=2.8 Score=34.94 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
++-+.+++++|+|||....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~ 116 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAA 116 (295)
T ss_dssp SEEEEEECCTTTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4467788999999996543
No 218
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.08 E-value=1.7 Score=43.62 Aligned_cols=78 Identities=13% Similarity=0.097 Sum_probs=60.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.+++|+|++++-+..+.+.+++.. .+.++..++|+.+..+....+ .+..+|+|||. +-..++++.++
T Consensus 812 g~qvlvf~~~v~~~~~l~~~L~~~~--p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~------v~e~GiDip~v 883 (1151)
T 2eyq_A 812 GGQVYYLYNDVENIQKAAERLAELV--PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETGIDIPTA 883 (1151)
T ss_dssp TCEEEEECCCSSCHHHHHHHHHHHC--TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS------TTGGGSCCTTE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC--CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC------cceeeecccCC
Confidence 4689999999999999999888763 357788899988766543332 25689999996 33457899999
Q ss_pred cEEEechhhH
Q 022383 177 KLLVLDESDE 186 (298)
Q Consensus 177 ~~vViDE~h~ 186 (298)
++||+..++.
T Consensus 884 ~~VIi~~~~~ 893 (1151)
T 2eyq_A 884 NTIIIERADH 893 (1151)
T ss_dssp EEEEETTTTS
T ss_pred cEEEEeCCCC
Confidence 9999887764
No 219
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=90.03 E-value=0.64 Score=35.81 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=43.2
Q ss_pred ChHHHHHHHHHhhc--CCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHH
Q 022383 56 PSAIQQRAVMPIIK--GRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEK 119 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~--~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~ 119 (298)
..+-|..++..++. .+-.++.++-|++|+...+-.++..-.. .|.++.+|+|+..-...+.+
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~--~Gr~V~vLAp~~~s~~~l~~ 98 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE--QGREVQIIAADRRSQMNMKQ 98 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH--TTCCEEEECSTTHHHHHHSC
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh--cCeEEEEEcCchHHHHHHHh
Confidence 44678888888763 3457788999999997754444443333 36689999999876555444
No 220
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.98 E-value=0.3 Score=43.32 Aligned_cols=43 Identities=19% Similarity=0.354 Sum_probs=26.2
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELA 114 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~ 114 (298)
...++++.|+||+|||... ..++..+... +..++|+=|..++.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~--g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR--GDRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT--TCEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC--CCcEEEEeCCCchh
Confidence 4579999999999999874 3333333221 23455555554443
No 221
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=89.94 E-value=0.067 Score=44.44 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=29.1
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHH-HHHHHHHhh--cCCcEEEEcCCCCchHHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAI-QQRAVMPII--KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~~~~-Q~~~~~~~~--~~~~~li~~pTG~GKT~~~ 87 (298)
+..+|++++-.+.+++.|++.- . .|+ ...++..+. -.+.+++.||+|+|||...
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i-~--~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI-L--APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -------CCHHHHHHHHHHHHH-T--HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH-H--HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 4568999987778888877631 1 121 123333321 2345999999999999643
No 222
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=89.84 E-value=1.2 Score=37.79 Aligned_cols=73 Identities=12% Similarity=0.215 Sum_probs=54.1
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.++||.|++++-+..+.+.+++. +..+..++|+.+..+....+ .+..+|+|+|. .+ ..++++.++
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~-----~~Gid~~~~ 307 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-VM-----SRGIDVNDL 307 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-TH-----HHHCCCSCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-hh-----hcCCCcccC
Confidence 457999999999999999988775 67788899987766544332 24678999994 22 235778888
Q ss_pred cEEEech
Q 022383 177 KLLVLDE 183 (298)
Q Consensus 177 ~~vViDE 183 (298)
++||.-+
T Consensus 308 ~~Vi~~~ 314 (367)
T 1hv8_A 308 NCVINYH 314 (367)
T ss_dssp SEEEESS
T ss_pred CEEEEec
Confidence 8888644
No 223
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.78 E-value=0.45 Score=37.60 Aligned_cols=32 Identities=25% Similarity=0.214 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 56 PSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 56 ~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
-+.-|..++..+..|.-+.+.||+|+|||...
T Consensus 8 k~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 8 KTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 34456778888889999999999999999643
No 224
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.59 E-value=2.6 Score=35.73 Aligned_cols=52 Identities=21% Similarity=0.394 Sum_probs=28.5
Q ss_pred ccEEEechhhHhh-ccccHHHHHHHHHhCCCCccEEEEEeeCchhHHHHHHhc
Q 022383 176 IKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKF 227 (298)
Q Consensus 176 l~~vViDE~h~~~-~~~~~~~i~~i~~~~~~~~~~v~~SAT~~~~~~~~~~~~ 227 (298)
.+++++|.+-... ...+...+..+.+.+.+...++.+.++-.......+..+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 4566677664432 123344455555555556667777777665555555443
No 225
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.56 E-value=0.49 Score=49.76 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=32.0
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTE 118 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~ 118 (298)
+..|+++++.+|+|+|||......+.+.... +.+++|+. ..++.+++.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~---Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEC-TTSCCCHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEE-ccccHHHHH
Confidence 3356899999999999997655555554433 45677776 344444544
No 226
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=89.47 E-value=0.92 Score=49.88 Aligned_cols=77 Identities=16% Similarity=0.163 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHH---HhhcCCcEEEEcCCCCchHHHHHHHH--HHhhccCCCCeEEEEEcCcHHHH
Q 022383 40 IKDDLLRGIYQYGFEKPSAIQQRAVM---PIIKGRDVIAQAQSGTGKTSMIALTV--CQTVDTSSREVQALILSPTRELA 114 (298)
Q Consensus 40 l~~~i~~~l~~~~~~~~~~~Q~~~~~---~~~~~~~~li~~pTG~GKT~~~~~~~--~~~~~~~~~~~~~lil~p~~~l~ 114 (298)
+...+.+.+.++|+..-..+-..++. .+.-+..++++||||+|||.++-... +..+.. .....-++-|----.
T Consensus 873 l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~--~~~~~~~iNPKait~ 950 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDN--IKSEAHVMDPKAITK 950 (3245)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTT--CEEEEEEECTTTSCH
T ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhC--CCceEEEECCCCCch
Confidence 44567777888888744334344443 34467789999999999999875322 222211 223455666755445
Q ss_pred HHHH
Q 022383 115 TQTE 118 (298)
Q Consensus 115 ~q~~ 118 (298)
.|++
T Consensus 951 ~eLy 954 (3245)
T 3vkg_A 951 DQLF 954 (3245)
T ss_dssp HHHH
T ss_pred hhhc
Confidence 5544
No 227
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=89.45 E-value=0.23 Score=50.54 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=26.0
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLIS 213 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~S 213 (298)
++-+.+|+||+=.-++..-...+...++...+++-++.++
T Consensus 1234 r~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IA 1273 (1321)
T 4f4c_A 1234 RNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIA 1273 (1321)
T ss_dssp SCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEEC
T ss_pred hCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEec
Confidence 4567888888865555555666777777666555555543
No 228
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=89.28 E-value=0.91 Score=37.00 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.+.++++.||+|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 5679999999999999654
No 229
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.13 E-value=0.32 Score=37.05 Aligned_cols=18 Identities=22% Similarity=0.516 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
++.+++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 468999999999999653
No 230
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.12 E-value=0.73 Score=40.67 Aligned_cols=27 Identities=15% Similarity=0.334 Sum_probs=18.7
Q ss_pred HHHHHHHhh--cCCcEEEEcCCCCchHHH
Q 022383 60 QQRAVMPII--KGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 60 Q~~~~~~~~--~~~~~li~~pTG~GKT~~ 86 (298)
+..++..+. .|.-+++.||||||||..
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 444444433 345689999999999954
No 231
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=88.97 E-value=0.78 Score=46.19 Aligned_cols=54 Identities=20% Similarity=0.143 Sum_probs=41.8
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccC---------CCCeEEEEEcCcHHHHHHHHHHHHHh
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS---------SREVQALILSPTRELATQTEKVILAI 124 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~---------~~~~~~lil~p~~~l~~q~~~~~~~~ 124 (298)
...+|.|+.|||||.+..--++..+... -...++|+|+=|++-+.++.+++++.
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 3459999999999988766666666432 12348999999999999999888764
No 232
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=88.69 E-value=1.9 Score=37.87 Aligned_cols=96 Identities=18% Similarity=0.196 Sum_probs=60.6
Q ss_pred CCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEc--------CCchHHHHHH---
Q 022383 79 SGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVG--------GKSVGEDIRK--- 147 (298)
Q Consensus 79 TG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~--- 147 (298)
..++|... +.-++........+.++||.|+++.-+..+.+.++.. ++.+..++| +.+..++...
T Consensus 340 ~~~~k~~~-l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~ 414 (494)
T 1wp9_A 340 LDHPKMDK-LKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDE 414 (494)
T ss_dssp CSCHHHHH-HHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHH
T ss_pred CCChHHHH-HHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHH
Confidence 44555543 3333333321123558999999999999999988875 678888888 5444333222
Q ss_pred h-hcCCcEEEeChHHHHHHHhccCccCCCccEEEechhh
Q 022383 148 L-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD 185 (298)
Q Consensus 148 ~-~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h 185 (298)
. .+.++|+|+|. .-..++++..+++||+-+..
T Consensus 415 F~~~~~~vLv~T~------~~~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 415 FARGEFNVLVATS------VGEEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp HHHTSCSEEEECG------GGGGGGGSTTCCEEEESSCC
T ss_pred HhcCCceEEEECC------ccccCCCchhCCEEEEeCCC
Confidence 2 25578999994 12346888889998876553
No 233
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=88.37 E-value=0.083 Score=40.28 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=51.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.++||.|+++..+..+.+.++.. ++.+..++|+.+..+....+ .+..+|+|+|. .+ ..++++..+
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-~~-----~~Gid~~~~ 99 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-VA-----ARGIDIPDV 99 (170)
Confidence 457999999999999998887764 56777888876654443322 24567999993 22 235667777
Q ss_pred cEEEechh
Q 022383 177 KLLVLDES 184 (298)
Q Consensus 177 ~~vViDE~ 184 (298)
++||.-+.
T Consensus 100 ~~Vi~~~~ 107 (170)
T 2yjt_D 100 SHVFNFDM 107 (170)
Confidence 77776443
No 234
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=88.64 E-value=0.66 Score=41.97 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=28.6
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 43 DLLRGIYQYGFEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 43 ~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
.+...+.+. +..-...-..+...+..+.++++.||+|+|||..+
T Consensus 15 ~l~~~l~~~-ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 15 RLSSSLEKG-LYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHTT-CSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHhh-hHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 344444443 33333334455556678899999999999999643
No 235
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=88.48 E-value=0.34 Score=37.18 Aligned_cols=19 Identities=11% Similarity=0.324 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.|+-++++||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5678899999999999643
No 236
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=88.44 E-value=4 Score=36.64 Aligned_cols=74 Identities=8% Similarity=0.004 Sum_probs=50.8
Q ss_pred EEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCccE
Q 022383 103 QALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAIKL 178 (298)
Q Consensus 103 ~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~ 178 (298)
..++++....-+..+.+.+.+. +.++..++|+.+..+....+ .+..+|+|+|+..+.. ++++.++++
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v~~ 419 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNLHH 419 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSEEE
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccCcE
Confidence 4555555566666677666553 34788889987765443322 3567899999755543 678899999
Q ss_pred EEechhh
Q 022383 179 LVLDESD 185 (298)
Q Consensus 179 vViDE~h 185 (298)
||+.+..
T Consensus 420 vi~~~~~ 426 (510)
T 2oca_A 420 VVLAHGV 426 (510)
T ss_dssp EEESSCC
T ss_pred EEEeCCC
Confidence 9998876
No 237
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=88.21 E-value=1.2 Score=37.00 Aligned_cols=18 Identities=22% Similarity=0.542 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
..++++.||+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999654
No 238
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.20 E-value=0.55 Score=40.94 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=28.1
Q ss_pred CCccEEEechhhHhhcc---ccHHHHHHHHHhCCC-CccEEEEEeeCc
Q 022383 174 RAIKLLVLDESDEMLSR---GFKDQIYDVYRYLPP-DLQVVLISATLP 217 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~---~~~~~i~~i~~~~~~-~~~~v~~SAT~~ 217 (298)
..-.++|+||+|.+... .....+..+++..++ +.-+++.|-.+.
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVI 308 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGG
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHH
Confidence 34678999999999852 245556666666553 455566555553
No 239
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=88.03 E-value=0.52 Score=40.46 Aligned_cols=19 Identities=47% Similarity=0.760 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
++.+++.||+|+|||....
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4689999999999996543
No 240
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=87.95 E-value=0.28 Score=40.35 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.1
Q ss_pred hhcCCcEEEEcCCCCchHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~ 86 (298)
+..|.-+.++||||+|||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 45678899999999999964
No 241
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=87.90 E-value=0.23 Score=38.61 Aligned_cols=16 Identities=38% Similarity=0.767 Sum_probs=13.9
Q ss_pred CcEEEEcCCCCchHHH
Q 022383 71 RDVIAQAQSGTGKTSM 86 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~ 86 (298)
|-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999964
No 242
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=87.82 E-value=0.36 Score=41.70 Aligned_cols=20 Identities=25% Similarity=0.577 Sum_probs=17.6
Q ss_pred hhcCCcEEEEcCCCCchHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~ 86 (298)
+..|..+.++||||+|||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45789999999999999964
No 243
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.57 E-value=0.19 Score=40.93 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=32.4
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhh--cCCcEEEEcCCCCchHHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~li~~pTG~GKT~~~ 87 (298)
+..+|+++.-.+.....+++.-.. . -....+..+. -.+.+++.||+|+|||...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 456888887777777766653211 0 0112333221 1345999999999999643
No 244
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=87.51 E-value=0.94 Score=38.01 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.+.++++.||+|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999654
No 245
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=87.40 E-value=1.2 Score=39.49 Aligned_cols=68 Identities=6% Similarity=-0.008 Sum_probs=47.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh-hcCCcEEEeChHHHHHHHhccCccCCCccEE
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~v 179 (298)
+.+++|.||+++-+..+.+.+++. ++++..++|+... ...... .+..+|+|+|. +-..++++. +++|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~-~~~~~F~~g~~~vLVaT~------v~e~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFE-REYPTIKQKKPDFILATD------IAEMGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC---------CCCSEEEESS------STTCCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHH-HHHhhhcCCCceEEEECC------hhheeeccC-ceEE
Confidence 357999999999999999988875 5788888884332 222333 35679999995 233567888 8887
Q ss_pred E
Q 022383 180 V 180 (298)
Q Consensus 180 V 180 (298)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 7
No 246
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=87.34 E-value=0.7 Score=38.15 Aligned_cols=41 Identities=7% Similarity=-0.170 Sum_probs=34.6
Q ss_pred cchHHHHHHHHhhC--CCCcEEEEecchhhHHHHHHHHhhh-cC
Q 022383 257 EWKFDTLCDLYDTL--TITQAVIFCNTKRKIYYSVFYFWIR-WI 297 (298)
Q Consensus 257 ~~k~~~l~~ll~~~--~~~k~lIf~~s~~~~~~l~~~L~~~-~~ 297 (298)
..|...+..++... .+.|+||||++...++.+...|... |+
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~ 138 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNT 138 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCC
Confidence 34899998888765 6689999999999999999999874 53
No 247
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=87.07 E-value=0.44 Score=37.46 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.|+-++++||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677899999999999653
No 248
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.05 E-value=0.33 Score=41.19 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=20.1
Q ss_pred HHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 62 RAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 62 ~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
.+...+..++++++.||+|+|||...
T Consensus 38 ~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 38 RLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 33444557899999999999999643
No 249
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.86 E-value=0.32 Score=38.08 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=17.7
Q ss_pred HhhcCCcEEEEcCCCCchHHHH
Q 022383 66 PIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 66 ~~~~~~~~li~~pTG~GKT~~~ 87 (298)
+...|+-++++||+|+|||...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHH
Confidence 3457889999999999999643
No 250
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=86.77 E-value=0.48 Score=36.91 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=17.0
Q ss_pred hcCCcEEEEcCCCCchHHHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~~~ 88 (298)
..++.++++|++|+|||...-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 357889999999999996543
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=86.76 E-value=0.46 Score=37.10 Aligned_cols=19 Identities=32% Similarity=0.613 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.|+-+.++||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999653
No 252
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.72 E-value=0.39 Score=37.69 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.|+-+++.||||+|||...
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4567999999999999543
No 253
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=86.57 E-value=0.86 Score=38.48 Aligned_cols=55 Identities=11% Similarity=0.126 Sum_probs=32.2
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhccC---------CCC----eEEEEEcCcHHH-HHHHHHHHHHh
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDTS---------SRE----VQALILSPTREL-ATQTEKVILAI 124 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~~---------~~~----~~~lil~p~~~l-~~q~~~~~~~~ 124 (298)
|.-+++.||+|+|||...+-.+.+..... ..+ ..++|+.-...+ ..++...++++
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 35689999999999965444444322110 112 578888754432 45555555444
No 254
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=86.35 E-value=0.39 Score=40.97 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
++-++|+||||+|||....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3568999999999996543
No 255
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=86.23 E-value=0.35 Score=41.22 Aligned_cols=19 Identities=42% Similarity=0.712 Sum_probs=17.0
Q ss_pred hhcCCcEEEEcCCCCchHH
Q 022383 67 IIKGRDVIAQAQSGTGKTS 85 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~ 85 (298)
+..|+.+.++||||+|||.
T Consensus 168 i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHTCCEEEEESTTSCHHH
T ss_pred ccCCCEEEEECCCCCCHHH
Confidence 4578999999999999996
No 256
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=86.11 E-value=1.6 Score=35.78 Aligned_cols=45 Identities=13% Similarity=0.257 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHhhcCC-----cEEEEcCCCCchHHHHH
Q 022383 42 DDLLRGIYQYGFEKPSAIQQRAVMPIIKGR-----DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 42 ~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~-----~~li~~pTG~GKT~~~~ 88 (298)
..|.+.|+-.|++ |-.+- .++..+++++ .+++.||.|+|||..+.
T Consensus 73 n~i~~~l~~qg~~-~~~~~-~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD-PQYAA-SVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC-HHHHH-HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC-HHHHH-HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3788888888877 33222 2344455443 49999999999996554
No 257
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=85.97 E-value=1.1 Score=40.65 Aligned_cols=24 Identities=13% Similarity=0.274 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVC 92 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~ 92 (298)
++.+++|.|+||||||.+.-..+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999976443333
No 258
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=85.91 E-value=0.46 Score=38.17 Aligned_cols=52 Identities=19% Similarity=0.308 Sum_probs=29.7
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILA 123 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~ 123 (298)
.|.-+++.|++|+|||.-.+-.+.+..... +..++|++-. .-..++..++..
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS-SCHHHHHHHHHT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeeccc-CCHHHHHHHHHH
Confidence 356799999999999954433333332221 2246666532 334555555543
No 259
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=85.68 E-value=0.43 Score=36.53 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
++.++++|++|+|||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5679999999999997544
No 260
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=85.60 E-value=0.9 Score=40.54 Aligned_cols=20 Identities=40% Similarity=0.657 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCchHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~ 88 (298)
.++++++.||+|+|||..+.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHH
Confidence 34689999999999996543
No 261
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=85.46 E-value=0.38 Score=36.73 Aligned_cols=21 Identities=19% Similarity=0.338 Sum_probs=17.2
Q ss_pred hcCCcEEEEcCCCCchHHHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~~~ 88 (298)
..++.+++.|++|+|||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999997543
No 262
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=85.20 E-value=0.14 Score=42.10 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
.+.+++.||+|+|||...
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 467999999999999654
No 263
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=85.18 E-value=0.3 Score=40.39 Aligned_cols=54 Identities=11% Similarity=0.088 Sum_probs=32.9
Q ss_pred cccCcccCCCCHHHHHHHHHCCCCCChHHHHHHHHHhh--cCCcEEEEcCCCCchHHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQYGFEKPSAIQQRAVMPII--KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~~~~~~~~Q~~~~~~~~--~~~~~li~~pTG~GKT~~~ 87 (298)
+..+|+++.-.+.+...+++.-.. .. ....+..+. -.+.+++.||+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 456888987777777777654211 00 112232221 1345999999999999643
No 264
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=85.15 E-value=0.66 Score=36.32 Aligned_cols=18 Identities=17% Similarity=0.457 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchHHH
Q 022383 69 KGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~ 86 (298)
.|+-++++||+|+|||..
T Consensus 18 ~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECcCCCCHHHH
Confidence 678899999999999964
No 265
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=85.14 E-value=0.31 Score=37.48 Aligned_cols=20 Identities=20% Similarity=0.503 Sum_probs=16.7
Q ss_pred hhcCCcEEEEcCCCCchHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~ 86 (298)
+..|.-+++.||+|+|||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 44677899999999999964
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=85.10 E-value=0.5 Score=35.81 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
++-++++|++|+|||...
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999654
No 267
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=84.99 E-value=0.6 Score=36.67 Aligned_cols=35 Identities=14% Similarity=0.031 Sum_probs=23.1
Q ss_pred cCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC
Q 022383 69 KGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (298)
.|.-+++.||+|+|||......+. . .+..++++.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~---~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---L---SGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---H---HCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---H---cCCcEEEEEC
Confidence 467789999999999965443332 1 1336777663
No 268
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=84.85 E-value=0.67 Score=35.98 Aligned_cols=19 Identities=47% Similarity=0.623 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.|.-+.+.||+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5777899999999999653
No 269
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=84.75 E-value=0.7 Score=36.66 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=16.5
Q ss_pred hhcCCcEEEEcCCCCchHHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~ 87 (298)
+..|+-+.++||+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346888999999999999643
No 270
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.74 E-value=0.58 Score=39.54 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
+-++|.||||+|||....
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 457889999999996543
No 271
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.72 E-value=0.65 Score=38.91 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
++.++++||+|+|||....
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5678999999999997654
No 272
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.70 E-value=1.5 Score=34.55 Aligned_cols=45 Identities=16% Similarity=0.120 Sum_probs=28.0
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHhhcC----CcEEEEcCCCCchHHHH
Q 022383 41 KDDLLRGIYQYGFEKPSAIQQRAVMPIIKG----RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 41 ~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~----~~~li~~pTG~GKT~~~ 87 (298)
...|.+.|+-.|++ +..+ ...+..+.++ +.+++.||.|+|||..+
T Consensus 27 w~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 27 WRPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SHHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 34566666655544 4444 3444444444 35999999999999543
No 273
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=84.61 E-value=0.63 Score=36.18 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.6
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~~ 87 (298)
..|.-+.++||+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45778999999999999654
No 274
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.52 E-value=0.48 Score=38.52 Aligned_cols=53 Identities=23% Similarity=0.246 Sum_probs=29.9
Q ss_pred ccCcccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 32 ITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 32 ~~~~~~l~l~~~i~~~l~~~~--~~~~~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
..+|+++.-.+...+.+.+.- +..+..++.. .....+.+++.||+|+|||...
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKL---GGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHc---CCCCCCeEEEECcCCCCHHHHH
Confidence 457888876777766665420 0011100000 0112457999999999999654
No 275
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=84.41 E-value=1 Score=39.16 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=47.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhh----cCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLE----HGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
..++||.|+++.-+..+.+.+++. ++.+..++|+.+..++...+. +..+|+|+|. .-..++++..+
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~------~~~~Gidip~v 349 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD------LLARGIDVQQV 349 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS------SCC--CCGGGC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC------ccccCCCccCC
Confidence 347899999999999998887654 677888898877655443332 4568999995 22346777888
Q ss_pred cEEEech
Q 022383 177 KLLVLDE 183 (298)
Q Consensus 177 ~~vViDE 183 (298)
++||.-+
T Consensus 350 ~~Vi~~~ 356 (414)
T 3eiq_A 350 SLVINYD 356 (414)
T ss_dssp SCEEESS
T ss_pred CEEEEeC
Confidence 8887543
No 276
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=84.36 E-value=0.61 Score=39.29 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
-++|+||||+|||....
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47889999999996543
No 277
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=84.30 E-value=0.49 Score=41.06 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.7
Q ss_pred hhcCCcEEEEcCCCCchHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~ 86 (298)
+..|..++++||||+|||..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHH
T ss_pred hcCCCEEEEECCCCCCHHHH
Confidence 34677899999999999954
No 278
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=84.27 E-value=0.73 Score=35.40 Aligned_cols=17 Identities=35% Similarity=0.776 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCchHHHH
Q 022383 71 RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~ 87 (298)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999653
No 279
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=84.10 E-value=0.52 Score=35.36 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
-++++||+|||||...-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997543
No 280
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.86 E-value=0.84 Score=46.51 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=25.1
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEE
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVL 211 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~ 211 (298)
+++-+.+|+||+=.-++..-...+...++.+.+++-+|+
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~ii 608 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTII 608 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEE
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 367789999999776666556666666655543333333
No 281
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=83.84 E-value=0.5 Score=35.89 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCchHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~ 88 (298)
.|.-+.++||+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 56678999999999996543
No 282
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=83.79 E-value=0.63 Score=35.04 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
+..+.+.||.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999653
No 283
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=83.78 E-value=2.7 Score=37.93 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=54.6
Q ss_pred CchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEc--------CCchHHHHH---Hhh
Q 022383 81 TGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVG--------GKSVGEDIR---KLE 149 (298)
Q Consensus 81 ~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~---~~~ 149 (298)
++|... +.-++........+.++||.|+++..+..+.+.++..+...++.+..++| +.+..++.. ...
T Consensus 370 ~~k~~~-l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~ 448 (555)
T 3tbk_A 370 NPKLRD-LYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR 448 (555)
T ss_dssp CHHHHH-HHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------
T ss_pred CHHHHH-HHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHh
Confidence 455543 23333333222234589999999999999999998865433344444444 443333322 222
Q ss_pred --cCCcEEEeChHHHHHHHhccCccCCCccEEEech
Q 022383 150 --HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDE 183 (298)
Q Consensus 150 --~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE 183 (298)
+..+|+|+|. .-..++++..+++||.=+
T Consensus 449 ~~g~~~vLvaT~------~~~~GlDlp~v~~VI~~d 478 (555)
T 3tbk_A 449 ASGDNNILIATS------VADEGIDIAECNLVILYE 478 (555)
T ss_dssp ---CCSEEEECC------CTTCCEETTSCSEEEEES
T ss_pred cCCCeeEEEEcc------hhhcCCccccCCEEEEeC
Confidence 3578999995 223578889999988644
No 284
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=83.72 E-value=0.6 Score=35.82 Aligned_cols=20 Identities=45% Similarity=0.712 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCCchHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~ 88 (298)
.+..++++|++|+|||...-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999997543
No 285
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=83.66 E-value=0.62 Score=37.12 Aligned_cols=22 Identities=41% Similarity=0.600 Sum_probs=16.6
Q ss_pred HhhcCCcEEEEcCCCCchHHHH
Q 022383 66 PIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 66 ~~~~~~~~li~~pTG~GKT~~~ 87 (298)
+...|+-+.++||+|+|||...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHH
Confidence 3457888999999999999643
No 286
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=83.55 E-value=2.4 Score=36.48 Aligned_cols=19 Identities=26% Similarity=0.476 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
..++++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4689999999999996543
No 287
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=83.21 E-value=1.7 Score=37.11 Aligned_cols=54 Identities=9% Similarity=0.018 Sum_probs=30.5
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccC---CCCeEEEEEcCcHHH-HHHHHHHHHHh
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTS---SREVQALILSPTREL-ATQTEKVILAI 124 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~---~~~~~~lil~p~~~l-~~q~~~~~~~~ 124 (298)
.-+++.||+|+|||...+-.+.+..... ..+..++|+.-...+ ..++...++++
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 5689999999999965444343322211 024478888754421 33444444443
No 288
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=83.17 E-value=0.86 Score=35.70 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=16.8
Q ss_pred HhhcCCcEEEEcCCCCchHHHH
Q 022383 66 PIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 66 ~~~~~~~~li~~pTG~GKT~~~ 87 (298)
.+..|+-+.+.||+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5677889999999999999643
No 289
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=83.07 E-value=0.68 Score=36.03 Aligned_cols=19 Identities=37% Similarity=0.594 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.|.-+.+.||.|+|||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5678999999999999654
No 290
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=83.03 E-value=0.66 Score=40.00 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=15.6
Q ss_pred hcCCcEEEEcCCCCchHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~ 86 (298)
..+..++++||||||||..
T Consensus 121 ~~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3456799999999999954
No 291
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=83.01 E-value=0.76 Score=37.44 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
-++++||+|||||....
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 36899999999996543
No 292
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=82.96 E-value=2.2 Score=37.69 Aligned_cols=68 Identities=6% Similarity=-0.076 Sum_probs=47.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEE
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~v 179 (298)
+.+++|+||+++-++.+.+.+++. +.++..++|+........-..+..+|+|+|. +-..++++. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~------v~e~GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD------ISEMGANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG------GGGTSCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc------hHHcCcccC-CcEE
Confidence 347999999999999999988876 6788889987332211122235689999996 223456776 5555
No 293
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=82.71 E-value=0.86 Score=38.52 Aligned_cols=37 Identities=8% Similarity=0.125 Sum_probs=21.5
Q ss_pred CccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEe
Q 022383 175 AIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISA 214 (298)
Q Consensus 175 ~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SA 214 (298)
..+.+|++..|.+. .. ..+...++.+.+...++..|-
T Consensus 151 ~ad~ill~k~dl~d-e~--~~l~~~l~~l~~~~~ii~~sh 187 (318)
T 1nij_A 151 YADRILLTKTDVAG-EA--EKLHERLARINARAPVYTVTH 187 (318)
T ss_dssp TCSEEEEECTTTCS-CT--HHHHHHHHHHCSSSCEEECCS
T ss_pred hCCEEEEECcccCC-HH--HHHHHHHHHhCCCCeEEEecc
Confidence 45778888887662 22 455555555555555555443
No 294
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=82.50 E-value=0.57 Score=39.08 Aligned_cols=17 Identities=18% Similarity=0.010 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchHHHH
Q 022383 71 RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~ 87 (298)
+.+++.||+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57899999999999643
No 295
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=82.24 E-value=3 Score=39.18 Aligned_cols=68 Identities=6% Similarity=0.003 Sum_probs=48.3
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh-hcCCcEEEeChHHHHHHHhccCccCCCccEE
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~v 179 (298)
+.++||.||+++-++.+.+.+++. ++++..++|... ....... .+..+|+|+|. +-..++++. +++|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR-~~v~~~F~~g~~~VLVaTd------v~e~GIDip-v~~V 477 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSY-DTEYPKCKNGDWDFVITTD------ISEMGANFG-ASRV 477 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSH-HHHGGGGGTCCCSEEEECG------GGGTTCCCC-CSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHH-HHHHHHHHCCCceEEEECc------hhhcceeeC-CcEE
Confidence 457999999999999999888764 678888998422 2222222 25678999995 233467777 8777
Q ss_pred E
Q 022383 180 V 180 (298)
Q Consensus 180 V 180 (298)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
No 296
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=81.94 E-value=1.1 Score=38.63 Aligned_cols=23 Identities=26% Similarity=0.530 Sum_probs=17.3
Q ss_pred HHhhcCCc--EEEEcCCCCchHHHH
Q 022383 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 65 ~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
+.+++|.| ++.-|+||||||...
T Consensus 98 ~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 98 SQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCCEEEEEeCCCCCCccEEe
Confidence 44557876 566799999999764
No 297
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=81.68 E-value=0.65 Score=35.10 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.|..+.++||.|+|||...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TSEEEEEECSTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3567899999999999654
No 298
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=81.48 E-value=3.4 Score=34.45 Aligned_cols=71 Identities=11% Similarity=0.142 Sum_probs=49.9
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCC
Q 022383 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRA 175 (298)
Q Consensus 100 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~ 175 (298)
.+.++||.+++++-+..+.+.++ .+..++|+.+..+....+ .+..+|+|+|. . -..++++..
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~-~~~Gid~~~ 284 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----V-ASRGLDIPL 284 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----H-HHTTCCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----c-cccCCCccC
Confidence 34579999999998888776543 456778887765554333 24678999995 2 234788889
Q ss_pred ccEEEechh
Q 022383 176 IKLLVLDES 184 (298)
Q Consensus 176 l~~vViDE~ 184 (298)
+++||.-+.
T Consensus 285 ~~~Vi~~~~ 293 (337)
T 2z0m_A 285 VEKVINFDA 293 (337)
T ss_dssp BSEEEESSC
T ss_pred CCEEEEecC
Confidence 999887543
No 299
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=81.47 E-value=0.63 Score=42.97 Aligned_cols=39 Identities=26% Similarity=0.340 Sum_probs=26.8
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~ 212 (298)
.+.+++++||.-.-++......+...++.+..+.-+++.
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 535 (582)
T 3b5x_A 497 RDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVI 535 (582)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 678899999997766666666777777666544434443
No 300
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=81.43 E-value=2.1 Score=39.18 Aligned_cols=41 Identities=12% Similarity=0.308 Sum_probs=25.3
Q ss_pred CCcEEEEcCCCCchHHHHHHHHHHhhcc-CCCCeEEEEEcCc
Q 022383 70 GRDVIAQAQSGTGKTSMIALTVCQTVDT-SSREVQALILSPT 110 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~~~~~~~~~~-~~~~~~~lil~p~ 110 (298)
..+++|.|.||||||.+.-..+...+.. .+...+.+++=|-
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 3689999999999997654444444332 2233344444444
No 301
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=81.33 E-value=1.3 Score=37.59 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=17.9
Q ss_pred HHHhhcCCc--EEEEcCCCCchHHHH
Q 022383 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 64 ~~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
++.+++|.| ++.-|+||+|||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEe
Confidence 344567876 566799999999764
No 302
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=81.24 E-value=3.7 Score=36.38 Aligned_cols=67 Identities=10% Similarity=0.012 Sum_probs=48.2
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh-hcCCcEEEeChHHHHHHHhccCccCCCccEEE
Q 022383 102 VQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (298)
Q Consensus 102 ~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vV 180 (298)
.++||.||++.-++++.+.+++. ++.+..++++.... ..... .+..+|+|+|. +-..++++.. ++||
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~-~~~~f~~g~~~vLVaT~------v~~~GiDip~-~~VI 256 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDT-EYPKTKLTDWDFVVTTD------ISEMGANFRA-GRVI 256 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHH-HGGGGGSSCCSEEEECG------GGGSSCCCCC-SEEE
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHH-HHHhhccCCceEEEECC------HHHhCcCCCC-CEEE
Confidence 47999999999999999988764 67788888865532 22222 35679999995 2345677877 6666
No 303
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=81.22 E-value=0.77 Score=34.68 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchHHHH
Q 022383 72 DVIAQAQSGTGKTSMI 87 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~ 87 (298)
-++++|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999754
No 304
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=81.21 E-value=0.95 Score=38.38 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=14.6
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
+.++++||||+|||....
T Consensus 6 ~~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 358899999999996543
No 305
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=81.06 E-value=0.76 Score=34.42 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
.+++.|+.|+|||...-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996543
No 306
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=81.05 E-value=0.86 Score=34.79 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
+.-+++.|+.|+|||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999654
No 307
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=81.03 E-value=0.71 Score=38.51 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=15.1
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 379999999999996543
No 308
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=80.99 E-value=1.9 Score=40.51 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=64.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHh--hccCCceEEEEEcC--------CchHHHHHHhh----cCCcEEEeChHHHHHHH
Q 022383 101 EVQALILSPTRELATQTEKVILAI--GDFINIQAHACVGG--------KSVGEDIRKLE----HGVHVVSGTPGRVCDMI 166 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~ilV~Tp~~l~~~~ 166 (298)
+.++||.|+++..+..+.+.++.. ....++++..++|+ .+..++...+. +..+|+|+|. .
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~------~ 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT------V 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC------S
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc------c
Confidence 458999999999999999988764 12236788888888 66555443332 4578999995 2
Q ss_pred hccCccCCCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEEEee
Q 022383 167 KRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISAT 215 (298)
Q Consensus 167 ~~~~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~SAT 215 (298)
-..++++.++++||.=+. .++....++.+-+--.....+++++..
T Consensus 474 ~~~GIDip~v~~VI~~d~----p~s~~~~~Qr~GRArr~g~~~~l~~~~ 518 (699)
T 4gl2_A 474 AEEGLDIKECNIVIRYGL----VTNEIAMVQARGRARADESTYVLVAHS 518 (699)
T ss_dssp CCTTSCCCSCCCCEEESC----CCCHHHHHHHHTTSCSSSCEEEEEEES
T ss_pred cccCCccccCCEEEEeCC----CCCHHHHHHHcCCCCCCCceEEEEEeC
Confidence 335788889988874332 234445555555533334455555553
No 309
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=80.94 E-value=13 Score=33.12 Aligned_cols=23 Identities=39% Similarity=0.582 Sum_probs=18.6
Q ss_pred HhhcCCcEEEEcCCCCchHHHHH
Q 022383 66 PIIKGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 66 ~~~~~~~~li~~pTG~GKT~~~~ 88 (298)
.+.+|+..++.+|.|+|||....
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHHH
Confidence 34578999999999999996543
No 310
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=80.53 E-value=1.2 Score=38.01 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=17.1
Q ss_pred HHhhcCCc--EEEEcCCCCchHHHH
Q 022383 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 65 ~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
..+++|.| ++.-|+||||||...
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 34457876 566799999999764
No 311
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=80.43 E-value=2.6 Score=34.59 Aligned_cols=24 Identities=17% Similarity=0.260 Sum_probs=19.2
Q ss_pred HhhcCCcEEEEcCCCCchHHHHHH
Q 022383 66 PIIKGRDVIAQAQSGTGKTSMIAL 89 (298)
Q Consensus 66 ~~~~~~~~li~~pTG~GKT~~~~~ 89 (298)
-+..|.-+++.||+|+|||.....
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHH
Confidence 456788999999999999965443
No 312
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=80.16 E-value=1.5 Score=37.68 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=19.8
Q ss_pred HHHHhhcCCc--EEEEcCCCCchHHHHH
Q 022383 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (298)
Q Consensus 63 ~~~~~~~~~~--~li~~pTG~GKT~~~~ 88 (298)
.+..+++|.| ++.-|+||+|||....
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 5566778887 4667999999997753
No 313
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=80.13 E-value=1.4 Score=38.62 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=19.8
Q ss_pred HHHHhhcCCc--EEEEcCCCCchHHHHH
Q 022383 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (298)
Q Consensus 63 ~~~~~~~~~~--~li~~pTG~GKT~~~~ 88 (298)
.+..+++|.| ++.-|+||||||....
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4566678877 5667999999997753
No 314
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=79.95 E-value=27 Score=29.69 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCchHHHH
Q 022383 71 RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~ 87 (298)
..+.++|++|+|||..+
T Consensus 80 ~~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAI 96 (355)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999654
No 315
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=79.94 E-value=6.4 Score=36.56 Aligned_cols=68 Identities=9% Similarity=0.004 Sum_probs=48.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh-hcCCcEEEeChHHHHHHHhccCccCCCccEE
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~v 179 (298)
+.++||.|+++.-++.+.+.+++. ++++..++|+.... ..... .+..+|+|+|. +-..++++. +++|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~R~~-~l~~F~~g~~~VLVaTd------v~~rGiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDT-EYPKTKLTDWDFVVTTD------ISEMGANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTTHHH-HTTHHHHSCCSEEEECG------GGGTTCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHHHHH-HHHhhcCCCcEEEEECc------HHHcCcccC-ceEE
Confidence 347999999999999999988875 57788888753222 22222 35689999996 233467775 7776
Q ss_pred E
Q 022383 180 V 180 (298)
Q Consensus 180 V 180 (298)
|
T Consensus 423 I 423 (618)
T 2whx_A 423 I 423 (618)
T ss_dssp E
T ss_pred E
Confidence 3
No 316
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=79.86 E-value=1.6 Score=37.19 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=19.4
Q ss_pred HHHHhhcCCc--EEEEcCCCCchHHHH
Q 022383 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 63 ~~~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
.+..+++|.| ++.-|+||+|||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 5566778877 566799999999764
No 317
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=79.85 E-value=1.5 Score=37.56 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=19.5
Q ss_pred HHHHhhcCCc--EEEEcCCCCchHHHHH
Q 022383 63 AVMPIIKGRD--VIAQAQSGTGKTSMIA 88 (298)
Q Consensus 63 ~~~~~~~~~~--~li~~pTG~GKT~~~~ 88 (298)
.+..+++|.| ++.-|+||+|||....
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 4555678876 5667999999997753
No 318
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=79.83 E-value=1.5 Score=37.78 Aligned_cols=23 Identities=26% Similarity=0.531 Sum_probs=17.3
Q ss_pred HHhhcCCc--EEEEcCCCCchHHHH
Q 022383 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 65 ~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
..+++|.| ++.-|+||||||...
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 34557876 566799999999764
No 319
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=79.80 E-value=1.6 Score=37.44 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=17.3
Q ss_pred HHhhcCCc--EEEEcCCCCchHHHH
Q 022383 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 65 ~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
+.+++|.| ++.-|+||||||...
T Consensus 77 ~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 77 EAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCeeEEEecccCCCceEee
Confidence 34557876 566799999999764
No 320
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=79.77 E-value=1.4 Score=38.57 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=17.8
Q ss_pred HHHhhcCCc--EEEEcCCCCchHHHH
Q 022383 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 64 ~~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
+..+++|.| ++.-|+||||||...
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEe
Confidence 344567876 566799999999774
No 321
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=79.75 E-value=1.6 Score=37.50 Aligned_cols=23 Identities=30% Similarity=0.545 Sum_probs=17.2
Q ss_pred HHhhcCCc--EEEEcCCCCchHHHH
Q 022383 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 65 ~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
..+++|.| ++.-|+||+|||...
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 34557876 566799999999764
No 322
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=79.58 E-value=1.5 Score=37.71 Aligned_cols=22 Identities=36% Similarity=0.640 Sum_probs=16.8
Q ss_pred HhhcCCc--EEEEcCCCCchHHHH
Q 022383 66 PIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 66 ~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
.+++|.| ++.-|+||+|||...
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 4557876 566799999999764
No 323
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=79.43 E-value=1.5 Score=37.97 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=17.2
Q ss_pred HHhhcCCc--EEEEcCCCCchHHHH
Q 022383 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 65 ~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
..+++|.| ++.-|+||+|||...
T Consensus 95 ~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 95 DSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34567876 566799999999764
No 324
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=79.43 E-value=6.9 Score=37.39 Aligned_cols=75 Identities=19% Similarity=0.154 Sum_probs=54.3
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhh-------ccCCceEEEEEcCCchHHHHHHhh---------cCCcEEEeChHHHHH
Q 022383 101 EVQALILSPTRELATQTEKVILAIG-------DFINIQAHACVGGKSVGEDIRKLE---------HGVHVVSGTPGRVCD 164 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ilV~Tp~~l~~ 164 (298)
+..+||.+|++.-+..+.+.+++.. ...++.+..++|+.+..++...+. +...|+|+|.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 4589999999999999999887532 224788999999988766544332 2457999995
Q ss_pred HHhccCccCCCccEEEe
Q 022383 165 MIKRKTLRTRAIKLLVL 181 (298)
Q Consensus 165 ~~~~~~~~~~~l~~vVi 181 (298)
+-..++++..+.+||-
T Consensus 378 -iae~GidIp~v~~VId 393 (773)
T 2xau_A 378 -IAETSLTIDGIVYVVD 393 (773)
T ss_dssp -HHHHTCCCTTEEEEEE
T ss_pred -HHHhCcCcCCeEEEEe
Confidence 1223677888887763
No 325
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=79.42 E-value=1.2 Score=38.15 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchHHHH
Q 022383 72 DVIAQAQSGTGKTSMI 87 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~ 87 (298)
-++|+||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999654
No 326
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=79.33 E-value=1.6 Score=37.59 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=17.1
Q ss_pred HHhhcCCc--EEEEcCCCCchHHHH
Q 022383 65 MPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 65 ~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
..+++|.| ++.-|+||+|||...
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 34457876 566799999999764
No 327
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=79.31 E-value=0.74 Score=35.11 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~ 88 (298)
.|..+++.|+.|||||...-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35568999999999997543
No 328
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=79.28 E-value=3.4 Score=38.28 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=20.0
Q ss_pred HHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 63 AVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 63 ~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
+-..+..|..+++.||+|+|||..+
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccccCCCEEEEEeCCCCCHHHHH
Confidence 3344668899999999999999654
No 329
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=79.25 E-value=1.2 Score=34.65 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCCchHHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~~ 87 (298)
..|.-+.+.||+|+|||...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35678899999999999654
No 330
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=79.22 E-value=1.6 Score=37.63 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=17.6
Q ss_pred HHHhhcCCc--EEEEcCCCCchHHHH
Q 022383 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 64 ~~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
+..+++|.| ++.-|+||+|||...
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 344567876 566799999999764
No 331
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=79.16 E-value=1.6 Score=37.58 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=18.0
Q ss_pred HHHhhcCCc--EEEEcCCCCchHHHH
Q 022383 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 64 ~~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
++.+++|.| ++.-|+||+|||...
T Consensus 85 v~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 85 LQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCceeEEEeeCCCCCCCceEE
Confidence 344568876 566799999999764
No 332
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=79.07 E-value=1.6 Score=37.51 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=17.7
Q ss_pred HHHhhcCCc--EEEEcCCCCchHHHH
Q 022383 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 64 ~~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
+..+++|.| ++.-|+||+|||...
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 344567876 566799999999764
No 333
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=79.05 E-value=1.5 Score=34.33 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=16.2
Q ss_pred cEEEEcCCCCchHHHHHHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQ 93 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~ 93 (298)
-.++.|+.|+|||......++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4689999999999865443333
No 334
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=78.99 E-value=0.93 Score=36.13 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=13.2
Q ss_pred hhcCCcEEEEcCCCCchHHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~ 87 (298)
+..|+-+.+.||+|+|||...
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EECCCEEEEECSCC----CHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 446788999999999999643
No 335
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=78.99 E-value=0.73 Score=35.38 Aligned_cols=18 Identities=22% Similarity=0.362 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
.-+++.||+|+|||...-
T Consensus 3 ~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 457899999999996543
No 336
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=78.84 E-value=1.6 Score=37.58 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=17.6
Q ss_pred HHHhhcCCc--EEEEcCCCCchHHHH
Q 022383 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 64 ~~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
++.+++|.| ++.-|+||+|||...
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCceEEEEECCCCCCCceEe
Confidence 344567876 466699999999764
No 337
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=78.78 E-value=1.5 Score=37.68 Aligned_cols=24 Identities=38% Similarity=0.570 Sum_probs=17.8
Q ss_pred HHHhhcCCc--EEEEcCCCCchHHHH
Q 022383 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 64 ~~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
+..+++|.| ++.-|+||+|||...
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEE
Confidence 344567876 566799999999764
No 338
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=78.21 E-value=1.8 Score=37.65 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=17.8
Q ss_pred HHHhhcCCc--EEEEcCCCCchHHHH
Q 022383 64 VMPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 64 ~~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
+..+++|.| ++.-|+||||||...
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEe
Confidence 344567876 566799999999774
No 339
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=78.19 E-value=1.6 Score=38.33 Aligned_cols=25 Identities=28% Similarity=0.543 Sum_probs=19.4
Q ss_pred HHHHhhcCCc--EEEEcCCCCchHHHH
Q 022383 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 63 ~~~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
++..+++|.| ++.-|+||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5566778877 566699999999764
No 340
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.19 E-value=0.67 Score=39.39 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
...++++.||+|+|||...
T Consensus 44 ~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCceEEEECCCCccHHHHH
Confidence 3457999999999999654
No 341
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=78.18 E-value=2.4 Score=33.92 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=17.8
Q ss_pred cEEEEcCCCCchHHHHHHHHHHhh
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQTV 95 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~~~ 95 (298)
++++.++.|+|||...+-.+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999977554444433
No 342
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=78.12 E-value=1.5 Score=37.96 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=19.0
Q ss_pred HHHHhhcCCc--EEEEcCCCCchHHHH
Q 022383 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 63 ~~~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
++..+++|.| ++.-|+||||||...
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4556678876 566699999999764
No 343
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=77.94 E-value=1.2 Score=38.92 Aligned_cols=17 Identities=18% Similarity=0.444 Sum_probs=13.6
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
-++|.||||+|||....
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 46889999999996543
No 344
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=77.90 E-value=4 Score=38.26 Aligned_cols=79 Identities=14% Similarity=0.191 Sum_probs=45.4
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEc--------CCchHHHHH---Hhh--cCCcEEEeChHHHHHHH
Q 022383 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVG--------GKSVGEDIR---KLE--HGVHVVSGTPGRVCDMI 166 (298)
Q Consensus 100 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~---~~~--~~~~ilV~Tp~~l~~~~ 166 (298)
.+.++||.|+++.-+..+.+.++..+...++++..++| +.+..++.. ... +..+|+|+|. .
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~------v 470 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS------V 470 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE------S
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec------h
Confidence 35589999999999999999998865333466666654 544433322 222 4578999994 2
Q ss_pred hccCccCCCccEEEechh
Q 022383 167 KRKTLRTRAIKLLVLDES 184 (298)
Q Consensus 167 ~~~~~~~~~l~~vViDE~ 184 (298)
-..++++..+++||.-+.
T Consensus 471 ~~~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 471 ADEGIDIAQCNLVILYEY 488 (696)
T ss_dssp SCCC---CCCSEEEEESC
T ss_pred hhcCCcCccCCEEEEeCC
Confidence 335788889999886544
No 345
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=77.82 E-value=1.7 Score=37.68 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=16.7
Q ss_pred HhhcCCc--EEEEcCCCCchHHHH
Q 022383 66 PIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 66 ~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
.+++|.| ++.-|+||+|||...
T Consensus 95 ~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 95 EVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCceEEEEeecCCCCCcceec
Confidence 4557876 566799999999764
No 346
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=77.81 E-value=1.1 Score=34.76 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.0
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
+-++++|+.|+|||...-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 479999999999996543
No 347
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=77.77 E-value=1.1 Score=36.16 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCchHH
Q 022383 69 KGRDVIAQAQSGTGKTS 85 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~ 85 (298)
.|.-+.+.||+|+|||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 57789999999999995
No 348
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=77.62 E-value=0.98 Score=34.58 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
+.-++++|+.|+|||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999754
No 349
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=77.49 E-value=1.1 Score=35.19 Aligned_cols=18 Identities=22% Similarity=0.398 Sum_probs=14.8
Q ss_pred cCCcEEEEcCCCCchHHH
Q 022383 69 KGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~ 86 (298)
.|.-+.|.||+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456788999999999954
No 350
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=77.49 E-value=1.6 Score=37.97 Aligned_cols=32 Identities=28% Similarity=0.503 Sum_probs=21.7
Q ss_pred ChHHHHHHHH--------HhhcCCc--EEEEcCCCCchHHHH
Q 022383 56 PSAIQQRAVM--------PIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 56 ~~~~Q~~~~~--------~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
+..-|.+++. .+++|.| ++.-|+||||||...
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 3344666654 3457776 566799999999764
No 351
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=77.44 E-value=1.5 Score=37.18 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchHHHH
Q 022383 71 RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~ 87 (298)
..+++.||+|+|||...
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999654
No 352
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=77.32 E-value=1.9 Score=35.10 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCCchHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~ 88 (298)
.|+.+++.|++|+|||...-
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 38999999999999997543
No 353
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=77.27 E-value=3.6 Score=31.33 Aligned_cols=16 Identities=44% Similarity=0.443 Sum_probs=13.2
Q ss_pred CcEEEEcCCCCchHHH
Q 022383 71 RDVIAQAQSGTGKTSM 86 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~ 86 (298)
+-+.+.|++|+|||..
T Consensus 7 ~~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTL 22 (174)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEEeCCCCCHHHH
Confidence 3578999999999953
No 354
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=77.24 E-value=2.2 Score=32.74 Aligned_cols=42 Identities=14% Similarity=0.240 Sum_probs=22.2
Q ss_pred EEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHH
Q 022383 73 VIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (298)
Q Consensus 73 ~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 121 (298)
++|.|++|||||.-+.- +. .. +..++|+......-.+..+++
T Consensus 2 ilV~Gg~~SGKS~~A~~-la----~~--~~~~~yiaT~~~~d~e~~~rI 43 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA-LI----GD--APQVLYIATSQILDDEMAARI 43 (180)
T ss_dssp EEEEECTTSSHHHHHHH-HH----CS--CSSEEEEECCCC------CHH
T ss_pred EEEECCCCCcHHHHHHH-HH----hc--CCCeEEEecCCCCCHHHHHHH
Confidence 68999999999954332 21 11 235788876544333333333
No 355
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=76.90 E-value=1.8 Score=33.15 Aligned_cols=15 Identities=33% Similarity=0.725 Sum_probs=12.9
Q ss_pred cEEEEcCCCCchHHH
Q 022383 72 DVIAQAQSGTGKTSM 86 (298)
Q Consensus 72 ~~li~~pTG~GKT~~ 86 (298)
.+.+.||+|+|||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 468899999999964
No 356
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=76.84 E-value=5 Score=33.87 Aligned_cols=16 Identities=13% Similarity=0.094 Sum_probs=13.3
Q ss_pred cEEEEcCCCCchHHHH
Q 022383 72 DVIAQAQSGTGKTSMI 87 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~ 87 (298)
-+-+.||+|||||...
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999653
No 357
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=76.81 E-value=1.8 Score=32.37 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=15.5
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
+++++.|+.|||||...-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 689999999999997654
No 358
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=76.80 E-value=1.4 Score=33.98 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.|.-++++|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667899999999999654
No 359
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.79 E-value=1.7 Score=38.89 Aligned_cols=19 Identities=21% Similarity=0.421 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
..++++.||+|+|||...-
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999996543
No 360
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=76.77 E-value=1.2 Score=37.10 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.2
Q ss_pred CcEEEEcCCCCchHHHH
Q 022383 71 RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~ 87 (298)
.-++++||+|+|||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45899999999999654
No 361
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=76.73 E-value=1.1 Score=35.32 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=17.2
Q ss_pred hhcCCcEEEEcCCCCchHHHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~ 88 (298)
+..|.-+.+.||+|+|||....
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHH
Confidence 3356789999999999996543
No 362
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=76.70 E-value=1.1 Score=34.65 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
..++++|+.|+|||...-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999997543
No 363
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=76.67 E-value=2.1 Score=37.97 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=16.9
Q ss_pred HhhcCCc--EEEEcCCCCchHHHH
Q 022383 66 PIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 66 ~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
.+++|.| ++.-|+||+|||...
T Consensus 131 ~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 131 HNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HhhcCCceEEEEeCCCCCCCCEEe
Confidence 3457876 566799999999764
No 364
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=76.66 E-value=1.3 Score=33.93 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=16.9
Q ss_pred hcCCcEEEEcCCCCchHHHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~~~ 88 (298)
..+.-++++|+.|||||...-
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 356789999999999997543
No 365
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=76.55 E-value=1.4 Score=32.65 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.8
Q ss_pred cEEEEcCCCCchHHH
Q 022383 72 DVIAQAQSGTGKTSM 86 (298)
Q Consensus 72 ~~li~~pTG~GKT~~ 86 (298)
-.+|.||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468999999999954
No 366
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=76.50 E-value=2 Score=33.19 Aligned_cols=42 Identities=19% Similarity=0.272 Sum_probs=27.0
Q ss_pred CCCccEEEechhhHh--hccccHHHHHHHHHhCCCCccEEEEEeeCc
Q 022383 173 TRAIKLLVLDESDEM--LSRGFKDQIYDVYRYLPPDLQVVLISATLP 217 (298)
Q Consensus 173 ~~~l~~vViDE~h~~--~~~~~~~~i~~i~~~~~~~~~~v~~SAT~~ 217 (298)
....+++|+||+..+ .+..+...+..+++.. ..+++-+.|.+
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeecC
Confidence 467789999997666 3344666666666643 33555566753
No 367
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=76.43 E-value=1.5 Score=33.15 Aligned_cols=18 Identities=17% Similarity=0.477 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
+.+++.|+.|||||...-
T Consensus 5 ~~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 368999999999996543
No 368
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=76.38 E-value=1.6 Score=36.63 Aligned_cols=19 Identities=21% Similarity=0.172 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCCchHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~ 86 (298)
..|+-+.++||+|+|||..
T Consensus 124 ~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TTCSEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3688899999999999954
No 369
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=76.23 E-value=1.3 Score=33.64 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.|..+.++|+.|+|||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567889999999999654
No 370
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=76.01 E-value=2.6 Score=35.35 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=14.4
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
+-+++++|+|+|||....
T Consensus 105 ~vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 457899999999996543
No 371
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=75.77 E-value=2 Score=37.24 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=18.3
Q ss_pred HHHHhhcCCc--EEEEcCCCCchHHHH
Q 022383 63 AVMPIIKGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 63 ~~~~~~~~~~--~li~~pTG~GKT~~~ 87 (298)
.+..+++|.| ++.-|+||+|||...
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 3445567876 566699999999764
No 372
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=75.72 E-value=1.3 Score=35.68 Aligned_cols=19 Identities=37% Similarity=0.464 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCchHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~ 86 (298)
..|.-+.+.||+|+|||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3678899999999999953
No 373
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=75.68 E-value=1.8 Score=33.94 Aligned_cols=30 Identities=13% Similarity=0.273 Sum_probs=20.7
Q ss_pred hHHHHHHHHHhhcCCcEEEEcCCCCchHHHH
Q 022383 57 SAIQQRAVMPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 57 ~~~Q~~~~~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
++.++.. ..+..|.-++++|+.|+|||...
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 3444444 23456778999999999999654
No 374
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=75.65 E-value=1.2 Score=34.81 Aligned_cols=19 Identities=21% Similarity=0.211 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.|.-+.+.||+|||||...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3456789999999999653
No 375
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=75.60 E-value=5.6 Score=43.45 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=17.9
Q ss_pred hhcCCcEEEEcCCCCchHHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~ 87 (298)
+..+++++++||||+|||..+
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 446899999999999999653
No 376
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=75.25 E-value=3.4 Score=31.35 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=12.6
Q ss_pred cEEEEcCCCCchHHH
Q 022383 72 DVIAQAQSGTGKTSM 86 (298)
Q Consensus 72 ~~li~~pTG~GKT~~ 86 (298)
-+.+.|+.|+|||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999954
No 377
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=75.23 E-value=1.4 Score=38.08 Aligned_cols=16 Identities=25% Similarity=0.559 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchHHHH
Q 022383 72 DVIAQAQSGTGKTSMI 87 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~ 87 (298)
-.+++||||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5779999999999654
No 378
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=75.15 E-value=1.1 Score=34.89 Aligned_cols=23 Identities=17% Similarity=0.027 Sum_probs=17.7
Q ss_pred HHhhcCCcEEEEcCCCCchHHHH
Q 022383 65 MPIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 65 ~~~~~~~~~li~~pTG~GKT~~~ 87 (298)
+.+..+.-+.+.|++|+|||...
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHH
Confidence 34455677889999999999643
No 379
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=75.07 E-value=1.5 Score=34.79 Aligned_cols=19 Identities=37% Similarity=0.489 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCCchHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~ 86 (298)
..|.-+.+.||+|+|||..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3678899999999999963
No 380
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=74.97 E-value=4.5 Score=37.87 Aligned_cols=66 Identities=17% Similarity=0.142 Sum_probs=48.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHhhcCCcEEEeChHHHHHHHhccCccCCCccEEE
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vV 180 (298)
+.++||.+++++-++++.+.+++. ++++..++|+.+..+. ..++.+|+|+|. .+. ..+++. +++||
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----Vae-rGIDId-V~~VI 461 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALM-TGYTGD-FDSVI 461 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THH-HHCCCC-BSEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHH-ccCCCC-CcEEE
Confidence 458999999999999999988764 6788999998776542 234569999995 122 245554 78777
No 381
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=74.91 E-value=1.1 Score=35.68 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCCchHHH
Q 022383 69 KGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~ 86 (298)
.|.-+.+.||+|+|||.-
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999953
No 382
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=74.88 E-value=1.7 Score=32.51 Aligned_cols=18 Identities=17% Similarity=0.252 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
+.+++.|+.|||||...-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458899999999997543
No 383
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.87 E-value=5.1 Score=44.34 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=18.9
Q ss_pred HHHH-hhcCCcEEEEcCCCCchHHH
Q 022383 63 AVMP-IIKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 63 ~~~~-~~~~~~~li~~pTG~GKT~~ 86 (298)
.+.. +..++.++++||||+|||..
T Consensus 1296 ll~~ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1296 VLHAWLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHHHHHHTTCCCEEESSTTSSHHHH
T ss_pred HHHHHHHCCCcEEEECCCCCCHHHH
Confidence 3443 45789999999999999953
No 384
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=74.86 E-value=1.5 Score=33.42 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
+.-+++.|++|||||...-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999997543
No 385
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=74.84 E-value=2.4 Score=36.53 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=15.4
Q ss_pred cCCc--EEEEcCCCCchHHHH
Q 022383 69 KGRD--VIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~--~li~~pTG~GKT~~~ 87 (298)
.|.+ ++.-|+||||||...
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 578899999999764
No 386
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=74.71 E-value=1.4 Score=33.38 Aligned_cols=16 Identities=19% Similarity=0.250 Sum_probs=13.4
Q ss_pred cEEEEcCCCCchHHHH
Q 022383 72 DVIAQAQSGTGKTSMI 87 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~ 87 (298)
-.+++||+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5689999999999643
No 387
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=74.65 E-value=16 Score=35.90 Aligned_cols=90 Identities=17% Similarity=0.063 Sum_probs=62.8
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHH---HhhcC---CcEEEeChHHHHHHHhccCccC
Q 022383 100 REVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR---KLEHG---VHVVSGTPGRVCDMIKRKTLRT 173 (298)
Q Consensus 100 ~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~ilV~Tp~~l~~~~~~~~~~~ 173 (298)
.+.++||.|+++.-+..+...++.. .++++..++|+.+..+... ...++ ++|+|+|. . -..++++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-v-----~~~GlDl 572 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-I-----GSEGRNF 572 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-C-----TTCSSCC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-h-----hhcCCCc
Confidence 3558999999999999988877642 3788999999977654433 33333 89999994 2 2357889
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHh
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRY 202 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~ 202 (298)
.+++.||+-+.+ ++....++.+-+-
T Consensus 573 ~~~~~VI~~d~p----~~~~~~~Q~~GR~ 597 (968)
T 3dmq_A 573 QFASHMVMFDLP----FNPDLLEQRIGRL 597 (968)
T ss_dssp TTCCEEECSSCC----SSHHHHHHHHHTT
T ss_pred ccCcEEEEecCC----CCHHHHHHHhhcc
Confidence 999999987764 4444444444443
No 388
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=74.62 E-value=1.8 Score=34.12 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
+..+++.|+.|||||...-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4578999999999996543
No 389
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=74.57 E-value=1.8 Score=32.87 Aligned_cols=18 Identities=17% Similarity=0.329 Sum_probs=14.8
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
..+++.|+.|||||...-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999997543
No 390
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=74.51 E-value=1.6 Score=34.66 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=15.2
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.+..++++|++|||||...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3467899999999999754
No 391
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=74.50 E-value=1.5 Score=34.29 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
.+++.||.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999997543
No 392
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=74.41 E-value=1.2 Score=33.49 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=15.7
Q ss_pred hcCCcEEEEcCCCCchHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~ 86 (298)
..|.-+.+.||.|+|||.-
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4567788999999999953
No 393
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=74.27 E-value=12 Score=35.04 Aligned_cols=72 Identities=11% Similarity=0.135 Sum_probs=53.5
Q ss_pred EEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHH---HHHHhh---cCCcEEEeChHHHHHHHhccCccCCCcc
Q 022383 104 ALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGE---DIRKLE---HGVHVVSGTPGRVCDMIKRKTLRTRAIK 177 (298)
Q Consensus 104 ~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~---~~~~ilV~Tp~~l~~~~~~~~~~~~~l~ 177 (298)
.+++++++.-+.++.+.+++. ++.+..++|+.+..+ ...... +..+|+|+|. +-..++++ .++
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd------i~e~GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD------AIGMGLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG------GGGSSCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc------HHHCCcCc-Ccc
Confidence 366688898888888888764 678899999987763 333333 4479999996 23457888 899
Q ss_pred EEEechhhH
Q 022383 178 LLVLDESDE 186 (298)
Q Consensus 178 ~vViDE~h~ 186 (298)
+||+-....
T Consensus 392 ~VI~~~~~k 400 (677)
T 3rc3_A 392 RIIFYSLIK 400 (677)
T ss_dssp EEEESCSBC
T ss_pred EEEECCccc
Confidence 999877754
No 394
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=74.27 E-value=1.5 Score=33.42 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~ 88 (298)
.|..++++|+.|+|||...-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35678999999999996543
No 395
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=74.16 E-value=1.4 Score=36.34 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCchHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~ 86 (298)
..|.-+.+.||+|+|||..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp ETTSEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3578899999999999963
No 396
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=74.04 E-value=1.7 Score=38.65 Aligned_cols=18 Identities=22% Similarity=0.542 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
.+++++.||+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999654
No 397
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=74.02 E-value=1.6 Score=34.38 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=14.7
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
..+.+.||+|||||...-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999996543
No 398
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=73.93 E-value=1.3 Score=36.14 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCchHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~ 86 (298)
..|.-+.+.||+|+|||.-
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred eCCCEEEEECCCCCCHHHH
Confidence 3678899999999999963
No 399
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=73.83 E-value=1.5 Score=35.00 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCCchHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~ 86 (298)
..|.-+.+.||+|+|||.-
T Consensus 32 ~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp ETTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3678899999999999963
No 400
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=73.74 E-value=1.6 Score=33.32 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=13.4
Q ss_pred cEEEEcCCCCchHHHH
Q 022383 72 DVIAQAQSGTGKTSMI 87 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~ 87 (298)
-+++.|+.|+|||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999653
No 401
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=73.68 E-value=1.5 Score=35.52 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=16.2
Q ss_pred hcCCcEEEEcCCCCchHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~ 86 (298)
..|.-+.+.||+|+|||..
T Consensus 33 ~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp ETTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3678899999999999964
No 402
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=73.64 E-value=1.8 Score=34.15 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
...+++.|+.|+|||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578999999999996543
No 403
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=73.56 E-value=2.3 Score=35.68 Aligned_cols=18 Identities=44% Similarity=0.684 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
|.-+.++||+|+|||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 557889999999999653
No 404
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=73.51 E-value=3.2 Score=35.03 Aligned_cols=18 Identities=33% Similarity=0.427 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
+-+.+++++|+|||....
T Consensus 106 ~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357888999999996543
No 405
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=73.37 E-value=2 Score=35.95 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
|.-+.++||+|+|||...
T Consensus 100 g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 446789999999999654
No 406
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=73.30 E-value=1.6 Score=35.68 Aligned_cols=19 Identities=21% Similarity=0.475 Sum_probs=16.3
Q ss_pred hcCCcEEEEcCCCCchHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~ 86 (298)
..|.-+.+.||+|+|||..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3678899999999999964
No 407
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=73.24 E-value=1.7 Score=33.32 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.+.-++++|+.|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999654
No 408
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=73.24 E-value=1.7 Score=34.02 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
.+++.||.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999997543
No 409
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=73.21 E-value=19 Score=32.50 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=21.4
Q ss_pred cEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcC
Q 022383 72 DVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSP 109 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p 109 (298)
.+++++++|+|||....-.+.. +... +.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~-l~~~--G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYY-YQRK--GWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH-HHHT--TCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHhC--CCeEEEEec
Confidence 5888999999999654433322 2221 345666664
No 410
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=73.13 E-value=1.7 Score=33.77 Aligned_cols=19 Identities=26% Similarity=0.384 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
+.-+++.|+.|||||...-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4568999999999996543
No 411
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=73.06 E-value=1.6 Score=35.81 Aligned_cols=19 Identities=26% Similarity=0.478 Sum_probs=16.1
Q ss_pred hcCCcEEEEcCCCCchHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~ 86 (298)
..|.-+.+.||+|+|||..
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3678899999999999963
No 412
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=72.39 E-value=1.7 Score=33.07 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
+-++++|+.|||||...-
T Consensus 7 ~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 358899999999997543
No 413
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=72.35 E-value=1.8 Score=35.46 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=20.9
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhC
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~ 203 (298)
.+.+++++||--.-++......+..+++.+
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l 199 (262)
T 1b0u_A 170 MEPDVLLFDEPTSALDPELVGEVLRIMQQL 199 (262)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 677899999987666665555665655554
No 414
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=72.30 E-value=1.9 Score=33.49 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=16.3
Q ss_pred cCCcEEEEcCCCCchHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~ 88 (298)
.+.-++++|+.|||||...-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 46679999999999996543
No 415
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=72.26 E-value=1.6 Score=35.82 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=21.5
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhC
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~ 203 (298)
..+.+++++||--.-++......+..+++.+
T Consensus 175 ~~~p~lllLDEPts~LD~~~~~~~~~~l~~l 205 (263)
T 2olj_A 175 AMEPKIMLFDEPTSALDPEMVGEVLSVMKQL 205 (263)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 3677899999987666665566666666555
No 416
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=72.16 E-value=2 Score=33.46 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCCchHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~ 88 (298)
.+.-++++|+.|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46679999999999996543
No 417
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=72.11 E-value=1.9 Score=33.47 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
.+.+.||.|||||...-
T Consensus 4 ~i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999997543
No 418
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=72.04 E-value=12 Score=36.66 Aligned_cols=98 Identities=13% Similarity=0.153 Sum_probs=48.2
Q ss_pred CCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCce--------EEEEEcCCchHHHHHH---h
Q 022383 80 GTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQ--------AHACVGGKSVGEDIRK---L 148 (298)
Q Consensus 80 G~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~---~ 148 (298)
.++|-... .-++........+.++||.++++..+..+.+.+++.....+++ ....+|+.+..++... .
T Consensus 611 ~~~K~~~L-~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~F 689 (936)
T 4a2w_A 611 ENPKLEEL-VCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (936)
T ss_dssp CCHHHHHH-HHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC------------------------
T ss_pred CCHHHHHH-HHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHh
Confidence 45665443 3333332222345689999999999999999998753222233 3333455544443322 2
Q ss_pred h--cCCcEEEeChHHHHHHHhccCccCCCccEEEechh
Q 022383 149 E--HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (298)
Q Consensus 149 ~--~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~ 184 (298)
. +..+|+|+|. +-..++++..+++||.-+.
T Consensus 690 r~~g~~~VLVaT~------~~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 690 KTSKDNRLLIATS------VADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp ----CCSEEEEEC------C------CCCCSEEEEESC
T ss_pred hccCCeeEEEEeC------chhcCCcchhCCEEEEeCC
Confidence 2 4578999994 2234677888888886544
No 419
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.01 E-value=1.8 Score=34.94 Aligned_cols=30 Identities=23% Similarity=0.369 Sum_probs=20.2
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhC
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~ 203 (298)
.+.+++++||--.-++......+..+++.+
T Consensus 156 ~~p~lllLDEPts~LD~~~~~~l~~~l~~~ 185 (240)
T 1ji0_A 156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKI 185 (240)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 677889999886666665555555555554
No 420
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=71.90 E-value=1.1 Score=40.41 Aligned_cols=73 Identities=12% Similarity=0.151 Sum_probs=45.3
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHH---HHHh-hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGED---IRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
+.++||.|+++.-+..+...+.+. +..+..++|+....+. .... .+..+|+|+|. +-..++++.++
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~------~l~~GiDip~v 426 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTAD----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN------VIARGIDVSQV 426 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTT----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTTC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC------hhhcCCCccCC
Confidence 457999999999999988877653 5667777776544322 2223 35678999996 22346888899
Q ss_pred cEEEech
Q 022383 177 KLLVLDE 183 (298)
Q Consensus 177 ~~vViDE 183 (298)
++||..+
T Consensus 427 ~~VI~~~ 433 (508)
T 3fho_A 427 NLVVNYD 433 (508)
T ss_dssp CEEEC--
T ss_pred CEEEEEC
Confidence 9988544
No 421
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=71.88 E-value=1.9 Score=33.29 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=14.1
Q ss_pred CcEEEEcCCCCchHHHH
Q 022383 71 RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~ 87 (298)
.-++++|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999654
No 422
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=71.86 E-value=2.2 Score=39.47 Aligned_cols=15 Identities=27% Similarity=0.539 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHH
Q 022383 72 DVIAQAQSGTGKTSM 86 (298)
Q Consensus 72 ~~li~~pTG~GKT~~ 86 (298)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999953
No 423
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=71.85 E-value=2.7 Score=36.01 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
|.-+.+.||+|+|||....
T Consensus 131 G~i~~I~G~~GsGKTTL~~ 149 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAH 149 (349)
T ss_dssp SEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568899999999995443
No 424
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=71.84 E-value=2.2 Score=34.26 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
+.-+.++||.|+|||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 567999999999999643
No 425
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=71.83 E-value=1.5 Score=35.35 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.0
Q ss_pred hcCCcEEEEcCCCCchHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~ 86 (298)
..|.-+.+.||+|+|||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577889999999999964
No 426
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=71.82 E-value=2.8 Score=33.91 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.|..+.+.||+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677899999999999654
No 427
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=71.72 E-value=1.7 Score=32.94 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=11.6
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
+.-+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999997543
No 428
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=71.63 E-value=2 Score=33.03 Aligned_cols=16 Identities=19% Similarity=0.410 Sum_probs=13.3
Q ss_pred cEEEEcCCCCchHHHH
Q 022383 72 DVIAQAQSGTGKTSMI 87 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~ 87 (298)
.+++.|+.|+|||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999653
No 429
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=71.50 E-value=7.1 Score=34.06 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=24.0
Q ss_pred ChHHHHHHHHHhh---cCCcEEEEcCCCCchHHHH
Q 022383 56 PSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 56 ~~~~Q~~~~~~~~---~~~~~li~~pTG~GKT~~~ 87 (298)
+-..-..+++.+. .|+.+.+.+|+|+|||...
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 4444456666544 7899999999999999654
No 430
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=71.39 E-value=2.1 Score=31.82 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999996543
No 431
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=71.26 E-value=1.9 Score=33.36 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchHHHH
Q 022383 72 DVIAQAQSGTGKTSMI 87 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~ 87 (298)
.+.+.|+.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999654
No 432
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=71.26 E-value=1.7 Score=36.03 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCchHHH
Q 022383 69 KGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~ 86 (298)
.|.-+.+.||+|+|||.-
T Consensus 46 ~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 677889999999999963
No 433
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=71.15 E-value=2 Score=35.08 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=22.3
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhCC
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~ 204 (298)
..+.+++++||.-.-++......+..+++.+.
T Consensus 162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 193 (256)
T 1vpl_A 162 MVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193 (256)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HcCCCEEEEeCCccccCHHHHHHHHHHHHHHH
Confidence 36788999999876666655666666665553
No 434
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=71.08 E-value=1.9 Score=34.96 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=19.7
Q ss_pred EEEechhhHhhccccHHHHHHHHHhCC
Q 022383 178 LLVLDESDEMLSRGFKDQIYDVYRYLP 204 (298)
Q Consensus 178 ~vViDE~h~~~~~~~~~~i~~i~~~~~ 204 (298)
++++||--.-++......+..+++.+.
T Consensus 154 lllLDEPts~LD~~~~~~l~~~l~~l~ 180 (249)
T 2qi9_C 154 LLLLDEPMNSLDVAQQSALDKILSALS 180 (249)
T ss_dssp EEEESSTTTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHH
Confidence 999999877666666666666666653
No 435
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=71.08 E-value=1.4 Score=37.12 Aligned_cols=19 Identities=26% Similarity=0.585 Sum_probs=16.4
Q ss_pred hcCCcEEEEcCCCCchHHH
Q 022383 68 IKGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~ 86 (298)
..|.-+.++||+|+|||..
T Consensus 78 ~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 3678899999999999964
No 436
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=71.04 E-value=2.4 Score=32.42 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCCchHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~ 88 (298)
.|+-+++.|+.|+|||...+
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 56789999999999996544
No 437
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=70.91 E-value=2.6 Score=34.57 Aligned_cols=39 Identities=26% Similarity=0.191 Sum_probs=25.1
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCCCccEEEE
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLI 212 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~~~~~v~~ 212 (298)
.+.+++++||.-.-++......+..+++.+...-..+++
T Consensus 181 ~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tvii 219 (267)
T 2zu0_C 181 LEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFII 219 (267)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEE
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 456789999987666666667777777776433233433
No 438
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=70.88 E-value=28 Score=28.28 Aligned_cols=96 Identities=10% Similarity=0.062 Sum_probs=61.1
Q ss_pred CCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHH---hhc--CC
Q 022383 78 QSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRK---LEH--GV 152 (298)
Q Consensus 78 pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~ 152 (298)
...+||-.+ +.-++..+... +.++||.+.+...++.+...+.+. .++.+..++|+.+..+.... ... .+
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~~--~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~ 165 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALDE--GDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNNPSV 165 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHHT--TCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHHCTTC
T ss_pred cccCHHHHH-HHHHHHHHHhC--CCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcCCCCC
Confidence 456788754 33444444332 458999999999999888888763 25667788898876554333 332 35
Q ss_pred c-EEEeChHHHHHHHhccCccCCCccEEEechhh
Q 022383 153 H-VVSGTPGRVCDMIKRKTLRTRAIKLLVLDESD 185 (298)
Q Consensus 153 ~-ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~h 185 (298)
. ++++|. . -..++++...+.||+=+..
T Consensus 166 ~v~L~st~-~-----~g~Glnl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 166 KFIVLSVK-A-----GGFGINLTSANRVIHFDRW 193 (271)
T ss_dssp CEEEEECC-T-----TCCCCCCTTCSEEEECSCC
T ss_pred CEEEEehh-h-----hcCCcCcccCCEEEEECCC
Confidence 5 455553 1 2346788888888776553
No 439
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=70.86 E-value=2.7 Score=40.04 Aligned_cols=19 Identities=21% Similarity=0.421 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
..++++.||+|+|||...-
T Consensus 201 ~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999996543
No 440
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=70.81 E-value=2.1 Score=34.84 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchHHHH
Q 022383 71 RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~ 87 (298)
.-++++|+.|||||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 45889999999999654
No 441
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=70.80 E-value=1.9 Score=35.04 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=22.6
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCC
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~ 204 (298)
.+.+++++||.-.-++......+..+++.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 175 (253)
T 2nq2_C 145 SECKLILLDEPTSALDLANQDIVLSLLIDLA 175 (253)
T ss_dssp TTCSEEEESSSSTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 6778999999877666666666666666553
No 442
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=70.55 E-value=2 Score=35.20 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=21.8
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhC
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYL 203 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~ 203 (298)
.+.+++++||.-.-++......+..+++.+
T Consensus 155 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l 184 (266)
T 2yz2_A 155 HEPDILILDEPLVGLDREGKTDLLRIVEKW 184 (266)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 677899999987766666666666666555
No 443
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=70.48 E-value=0.88 Score=40.66 Aligned_cols=70 Identities=17% Similarity=0.158 Sum_probs=0.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
..++||.|+++.-+..+.+.+.+. +..+..++|+.+..+....+ .+..+|+|+|. . -..++++.++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~-~~~GlDip~v 402 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----V-CARGIDVEQV 402 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----c-cccCCccccC
Confidence 357999999999999988887765 56777888886655443322 24578999994 2 2246778888
Q ss_pred cEEE
Q 022383 177 KLLV 180 (298)
Q Consensus 177 ~~vV 180 (298)
++||
T Consensus 403 ~~VI 406 (479)
T 3fmp_B 403 SVVI 406 (479)
T ss_dssp ----
T ss_pred CEEE
Confidence 8887
No 444
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=70.42 E-value=2 Score=35.31 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=25.4
Q ss_pred CCCccEEEechhhHhhccccHHHHHHHHHhCCC
Q 022383 173 TRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (298)
Q Consensus 173 ~~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~ 205 (298)
..+.+++++||.-.-++......+..+++.+..
T Consensus 172 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~ 204 (271)
T 2ixe_A 172 IRKPRLLILDNATSALDAGNQLRVQRLLYESPE 204 (271)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTT
T ss_pred hcCCCEEEEECCccCCCHHHHHHHHHHHHHHHh
Confidence 377889999999777777677777777777743
No 445
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=70.35 E-value=3.3 Score=32.92 Aligned_cols=20 Identities=25% Similarity=0.410 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCCchHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~ 88 (298)
.+..+++.|++|+|||...-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34679999999999996543
No 446
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=70.30 E-value=2.6 Score=34.13 Aligned_cols=31 Identities=19% Similarity=0.064 Sum_probs=22.3
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCC
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLP 204 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~ 204 (298)
.+.+++++||.-.-++......+..+++.+.
T Consensus 160 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~ 190 (250)
T 2d2e_A 160 LEPTYAVLDETDSGLDIDALKVVARGVNAMR 190 (250)
T ss_dssp HCCSEEEEECGGGTTCHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 4567899999877667666666666666654
No 447
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=70.12 E-value=3.5 Score=36.05 Aligned_cols=28 Identities=14% Similarity=0.234 Sum_probs=22.2
Q ss_pred cCCccccCcccCCCCHHHHHHHHHCCCC
Q 022383 27 EGVEAITSFDAMGIKDDLLRGIYQYGFE 54 (298)
Q Consensus 27 ~~~~~~~~~~~l~l~~~i~~~l~~~~~~ 54 (298)
..+.++..++..|+++...+.|++.||.
T Consensus 78 ~~~~~~~~l~~~gi~~~~~~~L~~ag~~ 105 (400)
T 3lda_A 78 GSFVPIEKLQVNGITMADVKKLRESGLH 105 (400)
T ss_dssp CCSCBGGGGCCTTCCHHHHHHHHHTTCC
T ss_pred cCccCHHHHHhCCCCHHHHHHHHHcCCC
Confidence 3345666777778999999999999986
No 448
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=69.89 E-value=2.3 Score=32.54 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.3
Q ss_pred EEEEcCCCCchHHHHH
Q 022383 73 VIAQAQSGTGKTSMIA 88 (298)
Q Consensus 73 ~li~~pTG~GKT~~~~ 88 (298)
+++.|+.|||||...-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6789999999996543
No 449
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=69.81 E-value=5.1 Score=35.63 Aligned_cols=68 Identities=7% Similarity=-0.018 Sum_probs=45.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh-hcCCcEEEeChHHHHHHHhccCccCCCccEE
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL-EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLL 179 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~v 179 (298)
+.++||.||++.-++.+.+.+++. ++.+..+++..... ..... .+..+|+|+|. +-..++++.. ++|
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~~-~~~~f~~g~~~iLVaT~------v~~~GiDip~-~~V 257 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYDT-EYPKCKNGDWDFVITTD------ISEMGANFGA-SRV 257 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCCC-CGGGSSSCCCSEEEESS------CC---CCCSC-SEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHHH-HHhhccCCCceEEEECC------hHHhCeecCC-CEE
Confidence 347999999999999999988875 67788888753221 11222 24578999995 1223667777 666
Q ss_pred E
Q 022383 180 V 180 (298)
Q Consensus 180 V 180 (298)
|
T Consensus 258 I 258 (459)
T 2z83_A 258 I 258 (459)
T ss_dssp E
T ss_pred E
Confidence 5
No 450
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=69.74 E-value=2.3 Score=32.37 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=13.3
Q ss_pred cEEEEcCCCCchHHHH
Q 022383 72 DVIAQAQSGTGKTSMI 87 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~ 87 (298)
-+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3688999999999654
No 451
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=69.74 E-value=2 Score=37.04 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=0.0
Q ss_pred EEEEcCCCCchHHHH
Q 022383 73 VIAQAQSGTGKTSMI 87 (298)
Q Consensus 73 ~li~~pTG~GKT~~~ 87 (298)
.+++||||+|||...
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 452
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=69.49 E-value=3.8 Score=32.89 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCchHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~ 88 (298)
.+..+++.||.|||||...-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34569999999999996543
No 453
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=69.12 E-value=2.5 Score=33.21 Aligned_cols=19 Identities=21% Similarity=0.375 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCCchHHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~~ 88 (298)
+..+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999996543
No 454
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=69.06 E-value=2.5 Score=33.00 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=13.6
Q ss_pred CcEEEEcCCCCchHHHH
Q 022383 71 RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~ 87 (298)
.-.+|.||+|+|||..+
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 35688999999999653
No 455
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=68.36 E-value=6.3 Score=35.52 Aligned_cols=98 Identities=13% Similarity=0.144 Sum_probs=44.1
Q ss_pred CCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEE--------EcCCchHHHHH---Hh
Q 022383 80 GTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHAC--------VGGKSVGEDIR---KL 148 (298)
Q Consensus 80 G~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~---~~ 148 (298)
.++|-....-.+...... ..+.++||.|+++..+..+.+.+++.....++++..+ +|+.+..++.. ..
T Consensus 370 ~~~K~~~L~~~l~~~~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 448 (556)
T 4a2p_A 370 ENPKLEELVCILDDAYRY-NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 448 (556)
T ss_dssp CCHHHHHHHHHHHHHHHH-CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------
T ss_pred CChHHHHHHHHHHHHhcC-CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHh
Confidence 466664433222222211 2355899999999999999998876432223333333 34444433322 22
Q ss_pred h--cCCcEEEeChHHHHHHHhccCccCCCccEEEechh
Q 022383 149 E--HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (298)
Q Consensus 149 ~--~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~ 184 (298)
. +..+|+|+|. .-..++++..+++||.=+.
T Consensus 449 ~~~g~~~vLvaT~------~~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 449 KTSKDNRLLIATS------VADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp -----CCEEEEEC-----------------CEEEEETC
T ss_pred cccCceEEEEEcC------chhcCCCchhCCEEEEeCC
Confidence 2 3478999995 1234678888999886544
No 456
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=68.24 E-value=1.7 Score=35.29 Aligned_cols=17 Identities=35% Similarity=0.544 Sum_probs=14.3
Q ss_pred CcEEEEcCCCCchHHHH
Q 022383 71 RDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~ 87 (298)
..+++.|++|||||...
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999654
No 457
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=68.16 E-value=2.6 Score=33.29 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=13.8
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999997543
No 458
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=67.98 E-value=20 Score=32.73 Aligned_cols=79 Identities=8% Similarity=0.112 Sum_probs=50.8
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHhhcc----CCceEEEEEcCCch--HHHHHHhhcC-Cc---EEEeChHHHHHHHhcc
Q 022383 100 REVQALILSPTRELATQTEKVILAIGDF----INIQAHACVGGKSV--GEDIRKLEHG-VH---VVSGTPGRVCDMIKRK 169 (298)
Q Consensus 100 ~~~~~lil~p~~~l~~q~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~-~~---ilV~Tp~~l~~~~~~~ 169 (298)
.+.++||.|+++.-+..+.+.+++.... .+-.+..++|+... ........++ .+ |+|+|. + -..
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~-l~~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----L-LTT 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----T-TTT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----h-hhc
Confidence 3468999999999999999999876431 12235566676543 1222333331 22 666663 1 234
Q ss_pred CccCCCccEEEechh
Q 022383 170 TLRTRAIKLLVLDES 184 (298)
Q Consensus 170 ~~~~~~l~~vViDE~ 184 (298)
++++..+++||++..
T Consensus 512 GiDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 512 GVDAPTCKNVVLARV 526 (590)
T ss_dssp TCCCTTEEEEEEESC
T ss_pred CccchheeEEEEEec
Confidence 788999999998765
No 459
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=67.96 E-value=3.4 Score=32.77 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCCchHHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~~ 88 (298)
+.+-+++.||+||||+....
T Consensus 28 k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 44667889999999986543
No 460
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=67.96 E-value=2.4 Score=33.17 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=13.9
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996543
No 461
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=67.88 E-value=0.95 Score=43.57 Aligned_cols=54 Identities=15% Similarity=0.296 Sum_probs=31.6
Q ss_pred cccCcccCCCCHHHHHHHHHCC-CCCChHHHHHHHH--HhhcCCcEEEEcCCCCchHHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQYG-FEKPSAIQQRAVM--PIIKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~-~~~~~~~Q~~~~~--~~~~~~~~li~~pTG~GKT~~~ 87 (298)
+..+|+++.-.+.+++.+.+.- +...++ ..+. .+..++.+++.||+|+|||..+
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~---~~~~~~~~~~~~~vLL~GppGtGKT~La 528 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHP---DKFLKFGMTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSC---TTTTCCCCCCCCCCCCBCCTTSSHHHHH
T ss_pred ccccccccccchhhhhhHHHHHHhhhhch---HHHHhcCCCCCceeEEECCCCCCHHHHH
Confidence 3456777766666777766642 111110 0000 1235678999999999999654
No 462
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=67.80 E-value=3.1 Score=35.81 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
|.-+.++||+|+|||...
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 345889999999999654
No 463
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=67.73 E-value=21 Score=33.47 Aligned_cols=75 Identities=20% Similarity=0.163 Sum_probs=52.7
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhcc--------------------------------CCceEEEEEcCCchHHHHHHh
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDF--------------------------------INIQAHACVGGKSVGEDIRKL 148 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~ 148 (298)
+..+||.+|++.-+..+...+.+.... ....+...+|+.+..++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 457999999999999999888764321 012477889988776554333
Q ss_pred h----cCCcEEEeChHHHHHHHhccCccCCCccEEEe
Q 022383 149 E----HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVL 181 (298)
Q Consensus 149 ~----~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vVi 181 (298)
. +..+|+|+|. .-..++++..+.+||-
T Consensus 332 ~~f~~g~~~vlvaT~------~l~~Gidip~~~~VI~ 362 (715)
T 2va8_A 332 EGFRQRKIKVIVATP------TLAAGVNLPARTVIIG 362 (715)
T ss_dssp HHHHTTCSCEEEECG------GGGGSSCCCBSEEEEC
T ss_pred HHHHcCCCeEEEECh------HHhcccCCCceEEEEe
Confidence 2 5678999995 2234678888877663
No 464
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=67.69 E-value=1.8 Score=32.94 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.1
Q ss_pred cEEEEcCCCCchHHHH
Q 022383 72 DVIAQAQSGTGKTSMI 87 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~ 87 (298)
-+.++|++|+|||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999653
No 465
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=67.45 E-value=2.3 Score=35.36 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCCchHHH
Q 022383 69 KGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~ 86 (298)
.|.-+.+.||+|+|||..
T Consensus 63 ~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 578899999999999964
No 466
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=66.99 E-value=4.5 Score=35.72 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=21.5
Q ss_pred CcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEc
Q 022383 71 RDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (298)
+.++++|++|+|||....-.+...... +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~---G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR---GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH---HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEe
Confidence 368899999999996544322222111 34566665
No 467
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=66.87 E-value=2.9 Score=32.74 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=14.5
Q ss_pred CcEEEEcCCCCchHHHHH
Q 022383 71 RDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 71 ~~~li~~pTG~GKT~~~~ 88 (298)
.-+.+.|+.|||||...-
T Consensus 5 ~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999997543
No 468
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=66.74 E-value=6.1 Score=25.61 Aligned_cols=28 Identities=11% Similarity=0.011 Sum_probs=24.0
Q ss_pred CCCcEEEEecchhhHHHHHHHHhhhcCC
Q 022383 271 TITQAVIFCNTKRKIYYSVFYFWIRWIG 298 (298)
Q Consensus 271 ~~~k~lIf~~s~~~~~~l~~~L~~~~~~ 298 (298)
+..++++||.+-..+...+..|++.|+.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 4468999999988999999999998863
No 469
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=66.71 E-value=2.7 Score=37.98 Aligned_cols=52 Identities=13% Similarity=0.241 Sum_probs=30.8
Q ss_pred cccCcccCCCCHHHHHHHHHCC--CCCChHHHHHHHHHh--hcCCcEEEEcCCCCchHHHH
Q 022383 31 AITSFDAMGIKDDLLRGIYQYG--FEKPSAIQQRAVMPI--IKGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 31 ~~~~~~~l~l~~~i~~~l~~~~--~~~~~~~Q~~~~~~~--~~~~~~li~~pTG~GKT~~~ 87 (298)
+..+|+++.-.+..+..+++.- +..+ ..+..+ .-.+.+++.||+|+|||...
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~-----~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCG-----GGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhch-----hhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 4568898876666666665531 1000 111111 01256999999999999654
No 470
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=66.65 E-value=2.5 Score=32.76 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
+.-+.+.|++|+|||...
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345888999999999654
No 471
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=66.20 E-value=4 Score=32.00 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=13.5
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
.+++.||+||||+....
T Consensus 2 ~Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36888999999996543
No 472
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=65.90 E-value=1.3 Score=38.19 Aligned_cols=72 Identities=13% Similarity=0.118 Sum_probs=0.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHHHh----hcCCcEEEeChHHHHHHHhccCccCCCc
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIRKL----EHGVHVVSGTPGRVCDMIKRKTLRTRAI 176 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ilV~Tp~~l~~~~~~~~~~~~~l 176 (298)
..++||.|++++-+..+.+.+++. +..+..++|+.+..+....+ .+..+|+|+|. . -..++++..+
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~-~~~Gldi~~~ 328 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----L-LARGIDVQQV 328 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC-----h-hhcCCCcccC
Confidence 457999999999999988877654 56677788876554433222 13567899985 1 2236777788
Q ss_pred cEEEec
Q 022383 177 KLLVLD 182 (298)
Q Consensus 177 ~~vViD 182 (298)
++||.-
T Consensus 329 ~~Vi~~ 334 (394)
T 1fuu_A 329 SLVINY 334 (394)
T ss_dssp ------
T ss_pred CEEEEe
Confidence 887753
No 473
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=65.86 E-value=3.9 Score=36.82 Aligned_cols=52 Identities=12% Similarity=0.049 Sum_probs=30.8
Q ss_pred hhcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVI 121 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~ 121 (298)
+..|.-+++.|++|+|||...+-.+.+.... .+..++|++-- .-..|+..++
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E-~s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLE-ESVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESS-SCHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEecc-CCHHHHHHHH
Confidence 3456779999999999996544444443322 13357777642 2244555544
No 474
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=65.70 E-value=4.5 Score=33.95 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCCchHHH
Q 022383 69 KGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~ 86 (298)
.++.++|.||.|+|||..
T Consensus 30 ~~~~v~i~G~~G~GKT~L 47 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSL 47 (350)
T ss_dssp HCSEEEEECCTTSSHHHH
T ss_pred cCCeEEEECCCcCCHHHH
Confidence 468899999999999964
No 475
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=65.58 E-value=14 Score=28.10 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=16.7
Q ss_pred EcCCCCchHHHHHHHHHHhhccCCCCeEEEEEc
Q 022383 76 QAQSGTGKTSMIALTVCQTVDTSSREVQALILS 108 (298)
Q Consensus 76 ~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil~ 108 (298)
.+.-|.|||......+..... .+.+++++=
T Consensus 8 s~kgG~GKTt~a~~la~~la~---~g~~vlliD 37 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSR---SGYNIAVVD 37 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred eCCCCccHHHHHHHHHHHHHH---CCCeEEEEE
Confidence 356889999765433332222 244566664
No 476
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=65.52 E-value=3.9 Score=31.38 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
.+.+.|++|||||...-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57899999999997543
No 477
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=65.39 E-value=43 Score=25.52 Aligned_cols=122 Identities=5% Similarity=0.034 Sum_probs=44.9
Q ss_pred hcCCcEEEEcCCCCchHHHHHHHHHHhhcc----------CCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCc-eEEEEE
Q 022383 68 IKGRDVIAQAQSGTGKTSMIALTVCQTVDT----------SSREVQALILSPTRELATQTEKVILAIGDFINI-QAHACV 136 (298)
Q Consensus 68 ~~~~~~li~~pTG~GKT~~~~~~~~~~~~~----------~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~-~~~~~~ 136 (298)
+.|..+-+....|.|=|+.+.+|+-..-.. ...+.+++|+-........+...++.. ++ .+..
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~----g~~~v~~-- 91 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM----GVSEVEQ-- 91 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT----TCSEEEE--
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeeee--
Confidence 445677788889999999888886432111 112346666666666666555555543 22 2222
Q ss_pred cCCchHHHHHHhhcCCcEEEeChHHHHHHHhcc--------CccCCCccEEEechhhHhhccccHHHHHHHHHh---CCC
Q 022383 137 GGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRK--------TLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRY---LPP 205 (298)
Q Consensus 137 ~~~~~~~~~~~~~~~~~ilV~Tp~~l~~~~~~~--------~~~~~~l~~vViDE~h~~~~~~~~~~i~~i~~~---~~~ 205 (298)
+.+.+.....+... ...-..+++||+|= + |....-...+..+.+. ..+
T Consensus 92 -------------------a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~-~-lp~~~G~el~~~lr~~~~~~~~ 150 (206)
T 3mm4_A 92 -------------------CDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC-Q-MPEMDGYEATREIRKVEKSYGV 150 (206)
T ss_dssp -------------------ESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES-C-CSSSCHHHHHHHHHHHHHTTTC
T ss_pred -------------------eCCHHHHHHHHHhhcccccccccccCCCCCEEEEcC-C-CCCCCHHHHHHHHHhhhhhcCC
Confidence 12333344444321 22234678999982 1 1122212333333332 345
Q ss_pred CccEEEEEeeC
Q 022383 206 DLQVVLISATL 216 (298)
Q Consensus 206 ~~~~v~~SAT~ 216 (298)
..++|++|+..
T Consensus 151 ~~piI~ls~~~ 161 (206)
T 3mm4_A 151 RTPIIAVSGHD 161 (206)
T ss_dssp CCCEEEEESSC
T ss_pred CCcEEEEECCC
Confidence 78899999976
No 478
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=65.37 E-value=3.1 Score=35.38 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=13.1
Q ss_pred cEEEEcCCCCchHHHH
Q 022383 72 DVIAQAQSGTGKTSMI 87 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~ 87 (298)
-.+++||+|+|||...
T Consensus 25 ~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4579999999999653
No 479
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=65.17 E-value=3.2 Score=35.16 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=16.8
Q ss_pred hhcCCcEEEEcCCCCchHHHHH
Q 022383 67 IIKGRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 67 ~~~~~~~li~~pTG~GKT~~~~ 88 (298)
+..|..+++.||+|+|||...+
T Consensus 120 i~~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHH
Confidence 3345678999999999995444
No 480
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=65.13 E-value=7 Score=38.63 Aligned_cols=56 Identities=18% Similarity=0.278 Sum_probs=31.1
Q ss_pred CcccCC-C-CHHHHHHHHHCCCC----CChHHHHHHHHHhh---cCCcEEEEcCCCCchHHHHHH
Q 022383 34 SFDAMG-I-KDDLLRGIYQYGFE----KPSAIQQRAVMPII---KGRDVIAQAQSGTGKTSMIAL 89 (298)
Q Consensus 34 ~~~~l~-l-~~~i~~~l~~~~~~----~~~~~Q~~~~~~~~---~~~~~li~~pTG~GKT~~~~~ 89 (298)
+|..++ + .++..+..+..... +.+..-..|+..+. ..+.+++.|.+|+|||.+.-.
T Consensus 99 Pyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~ 163 (1052)
T 4anj_A 99 PYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF 163 (1052)
T ss_dssp CSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH
T ss_pred CCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHH
Confidence 444443 2 44555544433222 22233344444443 346799999999999987543
No 481
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=65.12 E-value=3.5 Score=33.06 Aligned_cols=19 Identities=11% Similarity=0.162 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.|.-+-+.||.|||||...
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4556789999999999654
No 482
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=65.08 E-value=79 Score=28.42 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=34.1
Q ss_pred HHHHHh---hcCCcEEEEcCCCCchHHHHHHHHHHhhccCCCCeEEEEE-c-CcHHHHHHHHHHHHH
Q 022383 62 RAVMPI---IKGRDVIAQAQSGTGKTSMIALTVCQTVDTSSREVQALIL-S-PTRELATQTEKVILA 123 (298)
Q Consensus 62 ~~~~~~---~~~~~~li~~pTG~GKT~~~~~~~~~~~~~~~~~~~~lil-~-p~~~l~~q~~~~~~~ 123 (298)
.+++.+ -+|+-..+.|+.|+|||...+-.+.+. ...+..++|+ + -...-+.++.+.+..
T Consensus 151 kaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~---~~~dv~~V~~~IGeR~~ev~e~~~~l~~ 214 (513)
T 3oaa_A 151 KAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQ---RDSGIKCIYVAIGQKASTISNVVRKLEE 214 (513)
T ss_dssp HHHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTT---SSSSCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred eeeccccccccCCEEEeecCCCCCcchHHHHHHHhh---ccCCceEEEEEecCChHHHHHHHHHHhh
Confidence 456654 478999999999999997644344443 1223233332 2 344444555554444
No 483
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=64.78 E-value=3.4 Score=31.99 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
.+.+.|+.|||||...-
T Consensus 14 iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57789999999997654
No 484
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=64.59 E-value=4.3 Score=35.16 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.6
Q ss_pred cCCcEEEEcCCCCchHHH
Q 022383 69 KGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~ 86 (298)
.|+.+.+.||+|+|||..
T Consensus 168 ~~~~i~l~G~~GsGKSTl 185 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTL 185 (377)
T ss_dssp TCCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 567899999999999954
No 485
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=64.54 E-value=3.3 Score=39.39 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCCchHHHH
Q 022383 70 GRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 70 ~~~~li~~pTG~GKT~~~ 87 (298)
+.++++.||+|+|||...
T Consensus 207 ~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEcCCCCCHHHHH
Confidence 578999999999999654
No 486
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=64.49 E-value=3.3 Score=34.38 Aligned_cols=16 Identities=19% Similarity=0.256 Sum_probs=13.2
Q ss_pred cEEEEcCCCCchHHHH
Q 022383 72 DVIAQAQSGTGKTSMI 87 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~ 87 (298)
-+.|.||+|+|||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778899999999653
No 487
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=64.31 E-value=3.3 Score=34.22 Aligned_cols=17 Identities=18% Similarity=0.351 Sum_probs=14.0
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
-++++|++|||||...-
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997543
No 488
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=64.21 E-value=3 Score=34.28 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=12.7
Q ss_pred cEEEEcCCCCchHHH
Q 022383 72 DVIAQAQSGTGKTSM 86 (298)
Q Consensus 72 ~~li~~pTG~GKT~~ 86 (298)
++.++||+|+|||..
T Consensus 4 ~v~lvG~nGaGKSTL 18 (270)
T 3sop_A 4 NIMVVGQSGLGKSTL 18 (270)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999953
No 489
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=63.85 E-value=83 Score=28.29 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=24.8
Q ss_pred HHHHHHh---hcCCcEEEEcCCCCchHHHHHHHHHHh
Q 022383 61 QRAVMPI---IKGRDVIAQAQSGTGKTSMIALTVCQT 94 (298)
Q Consensus 61 ~~~~~~~---~~~~~~li~~pTG~GKT~~~~~~~~~~ 94 (298)
..+++.+ -+|+-..|.|+.|+|||...+-.+.+.
T Consensus 163 iraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~ 199 (515)
T 2r9v_A 163 IKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQ 199 (515)
T ss_dssp CHHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTT
T ss_pred ccccccccccccCCEEEEEcCCCCCccHHHHHHHHHh
Confidence 3556654 489999999999999997644444444
No 490
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=63.55 E-value=3.1 Score=39.60 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=14.7
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
++++.||+|+|||..+-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 69999999999996643
No 491
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=63.36 E-value=9.8 Score=36.42 Aligned_cols=98 Identities=12% Similarity=0.119 Sum_probs=45.7
Q ss_pred CCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccC--------CceEEEEEcCCchHHHHH---Hh
Q 022383 80 GTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFI--------NIQAHACVGGKSVGEDIR---KL 148 (298)
Q Consensus 80 G~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~---~~ 148 (298)
.++|-....-.+...... ..+.++||.|+++..+..+.+.++...... |......+|+.+..++.. ..
T Consensus 611 ~~~K~~~L~~lL~~~~~~-~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F 689 (797)
T 4a2q_A 611 ENPKLEELVCILDDAYRY-NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (797)
T ss_dssp CCHHHHHHHHHHHHHHHH-CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC------------------------
T ss_pred CChHHHHHHHHHHHHhcc-CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHh
Confidence 466664433222222222 234689999999999999999987643222 223333344444443322 22
Q ss_pred h--cCCcEEEeChHHHHHHHhccCccCCCccEEEechh
Q 022383 149 E--HGVHVVSGTPGRVCDMIKRKTLRTRAIKLLVLDES 184 (298)
Q Consensus 149 ~--~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vViDE~ 184 (298)
. +..+|+|+|. .-..++++..+++||.=+.
T Consensus 690 ~~~g~~~vLVaT~------~~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 690 KTSKDNRLLIATS------VADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp ----CCSEEEEEC------C-------CCCSEEEEESC
T ss_pred hccCCceEEEEcC------chhcCCCchhCCEEEEeCC
Confidence 2 3578999995 1224678889999886544
No 492
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=63.33 E-value=5.9 Score=32.97 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=13.7
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
-+.+.+++|+|||....
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57788999999996544
No 493
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=63.29 E-value=3.4 Score=32.80 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCCchHHH
Q 022383 69 KGRDVIAQAQSGTGKTSM 86 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~ 86 (298)
.|.-+.+.|+.|+|||..
T Consensus 19 ~g~~i~i~G~~GsGKSTl 36 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTY 36 (230)
T ss_dssp CCEEEEEECSTTSCHHHH
T ss_pred CceEEEEECCCCCCHHHH
Confidence 355688999999999963
No 494
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=63.22 E-value=56 Score=26.26 Aligned_cols=81 Identities=14% Similarity=0.205 Sum_probs=52.6
Q ss_pred hcCCcEEEEcC-CCCchHHHHHHHHHHhhccCCCCeEEEEEcCcHHHHHHHHHHHHHhhccCCceEEEEEcCCchHHHHH
Q 022383 68 IKGRDVIAQAQ-SGTGKTSMIALTVCQTVDTSSREVQALILSPTRELATQTEKVILAIGDFINIQAHACVGGKSVGEDIR 146 (298)
Q Consensus 68 ~~~~~~li~~p-TG~GKT~~~~~~~~~~~~~~~~~~~~lil~p~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (298)
++||-++|.+. .|-|+..|-. +.. .+.++++..-+.+-++++.+.++.. +.++..+..+....+..+
T Consensus 5 L~gKvalVTGas~GIG~aiA~~------la~--~Ga~Vv~~~~~~~~~~~~~~~i~~~----g~~~~~~~~Dvt~~~~v~ 72 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKK------FAL--NDSIVVAVELLEDRLNQIVQELRGM----GKEVLGVKADVSKKKDVE 72 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHH------HHH--TTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTSHHHHH
T ss_pred CCCCEEEEeCCCCHHHHHHHHH------HHH--cCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCCHHHHH
Confidence 57888888854 5666664432 222 2557777777788888888877765 345666777766555544
Q ss_pred Hh-------hcCCcEEEeChH
Q 022383 147 KL-------EHGVHVVSGTPG 160 (298)
Q Consensus 147 ~~-------~~~~~ilV~Tp~ 160 (298)
.+ ..+.|++|-..+
T Consensus 73 ~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 73 EFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp HHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHcCCCCEEEECCc
Confidence 33 257889987654
No 495
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=63.17 E-value=3.9 Score=33.43 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=24.4
Q ss_pred CCccEEEechhhHhhccccHHHHHHHHHhCCC
Q 022383 174 RAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP 205 (298)
Q Consensus 174 ~~l~~vViDE~h~~~~~~~~~~i~~i~~~~~~ 205 (298)
.+.+++++||.-.-++......+..+++.+..
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~ 176 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK 176 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC
Confidence 67789999998776666667777777777754
No 496
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=63.12 E-value=85 Score=28.15 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=25.4
Q ss_pred HHHHHHh---hcCCcEEEEcCCCCchHHHHHHHHHHhh
Q 022383 61 QRAVMPI---IKGRDVIAQAQSGTGKTSMIALTVCQTV 95 (298)
Q Consensus 61 ~~~~~~~---~~~~~~li~~pTG~GKT~~~~~~~~~~~ 95 (298)
..+++.+ -+|+-..+.|+.|+|||...+-.+.+..
T Consensus 150 iraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 150 IKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp CHHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred eeecccccccccCCEEEEECCCCCCchHHHHHHHHHhh
Confidence 3556654 4799999999999999976544455543
No 497
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=63.07 E-value=21 Score=33.67 Aligned_cols=74 Identities=18% Similarity=0.118 Sum_probs=50.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHhhcc-----------------------------CCceEEEEEcCCchHHHHHHh---
Q 022383 101 EVQALILSPTRELATQTEKVILAIGDF-----------------------------INIQAHACVGGKSVGEDIRKL--- 148 (298)
Q Consensus 101 ~~~~lil~p~~~l~~q~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~--- 148 (298)
+..+||.||++.-+..+...+.+.... ....+...+++.+..++....
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 357999999999999999888764321 012478889988776554322
Q ss_pred -hcCCcEEEeChHHHHHHHhccCccCCCccEEE
Q 022383 149 -EHGVHVVSGTPGRVCDMIKRKTLRTRAIKLLV 180 (298)
Q Consensus 149 -~~~~~ilV~Tp~~l~~~~~~~~~~~~~l~~vV 180 (298)
.+..+|+|+|. .-..++++..+.+||
T Consensus 317 ~~g~~~vlvaT~------~l~~Gvdip~~~~VI 343 (720)
T 2zj8_A 317 RKGIIKAVVATP------TLSAGINTPAFRVII 343 (720)
T ss_dssp HTTSSCEEEECS------TTGGGCCCCBSEEEE
T ss_pred HCCCCeEEEECc------HhhccCCCCceEEEE
Confidence 25678999996 122467777777654
No 498
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=62.66 E-value=3.7 Score=39.77 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.6
Q ss_pred cEEEEcCCCCchHHHHH
Q 022383 72 DVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 72 ~~li~~pTG~GKT~~~~ 88 (298)
++++.||+|+|||..+-
T Consensus 590 ~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 68999999999996543
No 499
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=62.60 E-value=17 Score=30.56 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHCCCC-----CChH-HHHHHHHHhhc----------------CCcEEEEcCCCCchHHHHH
Q 022383 40 IKDDLLRGIYQYGFE-----KPSA-IQQRAVMPIIK----------------GRDVIAQAQSGTGKTSMIA 88 (298)
Q Consensus 40 l~~~i~~~l~~~~~~-----~~~~-~Q~~~~~~~~~----------------~~~~li~~pTG~GKT~~~~ 88 (298)
.++.+.+..++.++. ..+. .-......+.. |+-+++.|+.|+|||...+
T Consensus 92 ~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~ 162 (314)
T 1ko7_A 92 PPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETAL 162 (314)
T ss_dssp CCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHH
T ss_pred CCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHH
Confidence 477888888887764 1221 11122222222 7889999999999985543
No 500
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=62.57 E-value=4.6 Score=33.94 Aligned_cols=19 Identities=11% Similarity=-0.001 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCCchHHHH
Q 022383 69 KGRDVIAQAQSGTGKTSMI 87 (298)
Q Consensus 69 ~~~~~li~~pTG~GKT~~~ 87 (298)
.|.-+.|.||+|||||...
T Consensus 89 ~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCchHHHHH
Confidence 4556889999999999653
Done!