Query 022384
Match_columns 298
No_of_seqs 276 out of 3140
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 04:35:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/022384.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/022384hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ewk_A Sensor protein; PAS dom 99.9 1.5E-26 5.2E-31 187.3 16.2 159 31-293 2-160 (227)
2 2gj3_A Nitrogen fixation regul 99.8 1.7E-19 5.7E-24 130.6 16.6 116 18-137 5-120 (120)
3 4hia_A LOV protein; PAS, HTH, 99.8 9.4E-19 3.2E-23 135.2 15.7 128 15-143 4-131 (176)
4 2pr5_A Blue-light photorecepto 99.8 1E-18 3.5E-23 128.6 14.8 119 22-143 3-121 (132)
5 3mr0_A Sensory box histidine k 99.8 3.3E-18 1.1E-22 127.6 15.0 125 15-143 6-132 (142)
6 3ue6_A Aureochrome1; PAS/LOV d 99.8 4.1E-18 1.4E-22 129.9 13.6 121 17-141 34-157 (166)
7 3f1p_B ARYL hydrocarbon recept 99.8 2E-18 6.9E-23 124.9 11.3 115 20-138 4-120 (121)
8 1n9l_A PHOT-LOV1, putative blu 99.8 1.3E-17 4.5E-22 118.6 15.1 108 27-135 2-109 (109)
9 3p7n_A Sensor histidine kinase 99.8 1.4E-17 4.8E-22 137.0 15.4 121 15-139 60-183 (258)
10 3t50_A Blue-light-activated hi 99.8 9.8E-18 3.4E-22 122.1 12.9 117 23-143 2-121 (128)
11 3f1p_A Endothelial PAS domain- 99.7 8.7E-18 3E-22 120.7 9.2 109 27-139 8-117 (117)
12 4eet_B Phototropin-2; LOV, blu 99.7 1.2E-16 4.2E-21 113.4 14.4 111 23-137 2-115 (115)
13 3nja_A Probable ggdef family p 99.7 5.4E-17 1.9E-21 117.1 11.9 120 15-138 4-125 (125)
14 3mqq_A Transcriptional regulat 99.7 2.4E-17 8.2E-22 119.0 9.9 115 19-139 4-119 (120)
15 2z6d_A Phototropin-2; PAS-fold 99.7 5E-16 1.7E-20 111.9 15.8 123 16-142 4-129 (130)
16 3sw1_A Sensory box protein; li 99.7 2.5E-16 8.6E-21 119.4 14.8 123 17-143 24-149 (162)
17 2vv6_A FIXL, sensor protein FI 99.7 1.4E-16 4.8E-21 114.8 12.3 112 26-143 1-116 (119)
18 3lyx_A Sensory BOX/ggdef domai 99.7 5E-16 1.7E-20 111.0 15.1 120 16-139 5-124 (124)
19 1d06_A Nitrogen fixation regul 99.7 2.8E-16 9.6E-21 115.1 13.2 124 4-134 3-130 (130)
20 3h9w_A Diguanylate cyclase wit 99.7 1.4E-16 4.7E-21 114.1 10.1 111 27-141 2-114 (115)
21 2r78_A Sensor protein; sensory 99.7 1.1E-15 3.7E-20 110.0 14.9 110 15-134 8-117 (117)
22 3k3c_A Protein RV1364C/MT1410; 99.7 3.1E-16 1E-20 118.7 11.6 122 16-143 15-142 (158)
23 3mxq_A Sensor protein; PSI2, M 99.7 2E-16 7E-21 118.9 9.7 120 15-139 19-150 (152)
24 2wkq_A NPH1-1, RAS-related C3 99.7 7.3E-16 2.5E-20 131.4 14.2 118 22-143 15-135 (332)
25 3luq_A Sensor protein; PAS, hi 99.7 4E-15 1.4E-19 105.4 14.5 111 18-134 3-114 (114)
26 3ewk_A Sensor protein; PAS dom 99.6 3.9E-15 1.3E-19 120.0 15.2 113 16-132 109-227 (227)
27 3kx0_X Uncharacterized protein 99.6 1.8E-15 6.1E-20 118.0 12.2 122 16-143 35-162 (185)
28 3icy_A Sensor protein; sensory 99.6 1.7E-15 5.8E-20 108.2 9.1 114 17-134 3-118 (118)
29 2v0u_A NPH1-1, LOV2; kinase, t 99.6 5.9E-15 2E-19 108.7 12.2 116 20-139 4-122 (146)
30 3bwl_A Sensor protein; structu 99.6 5.2E-14 1.8E-18 101.9 15.5 120 5-134 5-126 (126)
31 2kdk_A ARYL hydrocarbon recept 99.6 1.4E-14 4.8E-19 104.2 12.0 111 23-137 8-120 (121)
32 3mjq_A Uncharacterized protein 99.6 4.3E-15 1.5E-19 107.3 8.5 116 21-143 2-117 (126)
33 3olo_A Two-component sensor hi 99.6 3E-14 1E-18 101.6 12.7 109 15-134 10-118 (118)
34 1v9y_A Heme PAS sensor protein 99.6 2.1E-14 7.1E-19 108.9 11.3 124 15-144 37-164 (167)
35 2l0w_A Potassium voltage-gated 99.6 1.7E-13 5.7E-18 99.8 15.0 114 19-136 20-138 (138)
36 1byw_A Protein (human ERG pota 99.6 2.5E-13 8.6E-18 94.6 15.0 107 29-136 2-110 (110)
37 3eeh_A Putative light and redo 99.5 2.9E-14 1E-18 102.0 10.0 116 15-134 8-125 (125)
38 4eho_A Bacteriophytochrome, PA 99.5 3.1E-15 1.1E-19 137.8 5.2 117 19-140 519-635 (635)
39 3vol_A Aerotaxis transducer AE 99.5 2.1E-13 7.1E-18 110.3 14.0 113 17-143 21-145 (233)
40 4f3l_A Mclock, circadian locom 99.5 1.7E-13 6E-18 117.9 12.1 65 17-84 85-149 (361)
41 3mfx_A Sensory BOX/ggdef famil 99.5 1.9E-13 6.6E-18 99.9 10.3 112 17-135 6-124 (129)
42 3d72_A Vivid PAS protein VVD; 99.5 1.1E-12 3.9E-17 97.7 14.0 106 22-132 30-149 (149)
43 3fc7_A HTR-like protein, senso 99.5 8.7E-14 3E-18 100.3 6.2 108 16-134 17-125 (125)
44 4f3l_A Mclock, circadian locom 99.4 5.2E-13 1.8E-17 115.0 8.3 108 29-140 252-360 (361)
45 4hi4_A Aerotaxis transducer AE 99.4 8.4E-12 2.9E-16 89.9 13.5 106 17-136 4-121 (121)
46 3rty_A Period circadian protei 99.4 1E-12 3.5E-17 111.3 9.7 48 31-81 6-54 (339)
47 2qkp_A Uncharacterized protein 99.4 4.4E-12 1.5E-16 95.1 11.4 118 18-142 19-139 (151)
48 4f3l_B BMAL1B; BHLH, PAS, circ 99.4 2.8E-12 9.7E-17 111.2 11.0 62 18-82 86-148 (387)
49 3fg8_A Uncharacterized protein 99.4 1.1E-12 3.8E-17 94.2 7.0 108 17-136 11-118 (118)
50 2vlg_A Sporulation kinase A; h 99.4 1.6E-12 5.5E-17 92.3 7.5 93 22-121 3-95 (111)
51 4f3l_B BMAL1B; BHLH, PAS, circ 99.4 2.2E-12 7.5E-17 111.9 9.4 106 30-138 280-386 (387)
52 3b33_A Sensor protein; structu 99.3 2.6E-11 9E-16 86.0 10.4 106 20-134 9-115 (115)
53 3cax_A Uncharacterized protein 99.2 1.2E-10 4.1E-15 100.4 11.4 116 17-142 238-353 (369)
54 3a0r_A Sensor protein; four he 99.2 1.7E-11 6E-16 104.8 5.7 117 16-143 6-123 (349)
55 1ll8_A PAS kinase; PAS domain, 99.1 6.6E-11 2.3E-15 83.9 5.0 103 26-134 6-113 (114)
56 3a0s_A Sensor protein; PAS-fol 99.1 3.1E-09 1.1E-13 71.5 11.9 95 27-132 1-96 (96)
57 3rty_A Period circadian protei 99.1 6.9E-10 2.4E-14 94.0 10.4 108 28-138 154-266 (339)
58 2w0n_A Sensor protein DCUS; si 99.0 6.1E-11 2.1E-15 84.0 2.6 104 15-134 12-118 (118)
59 1nwz_A PYP, photoactive yellow 99.0 7E-09 2.4E-13 74.0 12.4 98 21-125 20-119 (125)
60 2jhe_A Transcription regulator 99.0 4E-10 1.4E-14 87.7 6.6 108 15-138 77-190 (190)
61 1mzu_A PPR; photoactive yellow 99.0 2.9E-09 9.8E-14 76.1 9.8 98 21-125 25-124 (129)
62 3gdi_A Period circadian protei 98.9 2.6E-09 8.9E-14 89.3 9.1 58 23-82 20-77 (309)
63 4dj2_A Period circadian protei 98.9 3.6E-09 1.2E-13 88.8 9.9 55 24-81 32-87 (320)
64 4dj3_A Period circadian protei 98.9 1.1E-08 3.7E-13 85.8 11.9 104 29-135 175-281 (317)
65 4dj3_A Period circadian protei 98.9 1.1E-08 3.6E-13 85.8 10.5 58 23-82 31-88 (317)
66 1n9l_A PHOT-LOV1, putative blu 98.9 6E-10 2E-14 78.5 2.4 42 250-291 2-43 (109)
67 2gj3_A Nitrogen fixation regul 98.8 1.6E-09 5.5E-14 77.4 3.3 47 243-292 7-53 (120)
68 3gdi_A Period circadian protei 98.8 2.4E-08 8.3E-13 83.4 10.9 104 30-136 167-272 (309)
69 4dj2_A Period circadian protei 98.8 1.8E-08 6.2E-13 84.5 9.1 106 29-137 177-284 (320)
70 2r78_A Sensor protein; sensory 98.8 1.8E-09 6.2E-14 77.0 1.8 47 243-292 13-59 (117)
71 3bwl_A Sensor protein; structu 98.7 4.9E-09 1.7E-13 75.3 3.8 45 245-292 21-67 (126)
72 1d06_A Nitrogen fixation regul 98.7 3.2E-09 1.1E-13 77.0 2.1 48 243-293 18-65 (130)
73 3mfx_A Sensory BOX/ggdef famil 98.7 3.8E-09 1.3E-13 76.9 2.1 49 243-294 9-57 (129)
74 2pr5_A Blue-light photorecepto 98.6 1.2E-08 4.1E-13 74.1 2.4 47 246-292 4-50 (132)
75 2vv6_A FIXL, sensor protein FI 98.6 9.5E-09 3.3E-13 73.1 1.8 40 250-292 2-41 (119)
76 1ll8_A PAS kinase; PAS domain, 98.6 1.4E-08 4.7E-13 71.7 2.2 41 250-293 7-48 (114)
77 2vlg_A Sporulation kinase A; h 98.5 2E-08 6.8E-13 70.9 1.8 45 246-293 4-48 (111)
78 2ykf_A Pdtas, probable sensor 97.9 1.1E-08 3.9E-13 85.6 0.0 110 24-144 176-294 (305)
79 3olo_A Two-component sensor hi 98.5 3.1E-08 1.1E-12 69.8 2.0 47 244-293 16-62 (118)
80 3mxq_A Sensor protein; PSI2, M 98.5 3.5E-08 1.2E-12 73.8 2.3 48 243-293 24-71 (152)
81 3f1p_B ARYL hydrocarbon recept 98.4 6.4E-08 2.2E-12 68.9 2.5 45 246-293 7-51 (121)
82 3fg8_A Uncharacterized protein 98.4 6.8E-08 2.3E-12 68.7 2.5 48 243-293 14-61 (118)
83 4hi4_A Aerotaxis transducer AE 98.4 8.6E-08 2.9E-12 68.5 2.5 48 243-293 7-66 (121)
84 1mzu_A PPR; photoactive yellow 98.4 1.1E-07 3.6E-12 68.0 2.2 43 246-291 27-69 (129)
85 1nwz_A PYP, photoactive yellow 98.4 1E-07 3.5E-12 67.9 2.0 44 245-291 21-64 (125)
86 3b33_A Sensor protein; structu 98.4 1.6E-07 5.5E-12 66.0 2.8 47 244-293 10-56 (115)
87 4eet_B Phototropin-2; LOV, blu 98.3 1.6E-07 5.5E-12 65.4 2.5 48 246-293 2-49 (115)
88 2kdk_A ARYL hydrocarbon recept 98.3 1.3E-07 4.3E-12 67.2 1.9 47 244-293 6-52 (121)
89 3fc7_A HTR-like protein, senso 98.3 1.1E-07 3.9E-12 67.6 1.5 48 243-293 21-68 (125)
90 3luq_A Sensor protein; PAS, hi 98.3 2.8E-07 9.7E-12 64.1 3.3 48 243-293 5-52 (114)
91 3mqq_A Transcriptional regulat 98.3 1.1E-07 3.7E-12 67.6 1.1 47 243-293 5-51 (120)
92 4hia_A LOV protein; PAS, HTH, 98.3 1.4E-07 4.9E-12 71.8 1.6 51 243-293 9-59 (176)
93 3vol_A Aerotaxis transducer AE 98.3 2.4E-07 8.4E-12 74.4 2.6 49 243-294 24-84 (233)
94 3f1p_A Endothelial PAS domain- 98.3 2.5E-07 8.6E-12 65.3 2.2 40 251-293 9-48 (117)
95 2wkq_A NPH1-1, RAS-related C3 98.2 4.7E-07 1.6E-11 76.6 2.7 51 243-293 13-63 (332)
96 3t50_A Blue-light-activated hi 98.2 5E-07 1.7E-11 64.5 2.4 48 246-293 2-49 (128)
97 3ue6_A Aureochrome1; PAS/LOV d 98.2 5E-07 1.7E-11 67.7 2.2 51 243-293 37-87 (166)
98 3d72_A Vivid PAS protein VVD; 98.2 4.5E-07 1.5E-11 66.8 1.9 46 247-293 32-77 (149)
99 3p7n_A Sensor histidine kinase 98.2 8.1E-07 2.8E-11 72.3 3.5 51 243-293 65-115 (258)
100 3mjq_A Uncharacterized protein 98.2 6.9E-07 2.3E-11 63.4 2.6 46 245-293 3-48 (126)
101 3a0s_A Sensor protein; PAS-fol 98.2 5.1E-07 1.7E-11 60.2 1.7 39 251-292 2-40 (96)
102 1byw_A Protein (human ERG pota 98.0 1.4E-06 4.7E-11 59.5 1.9 37 252-288 2-38 (110)
103 2ykf_A Pdtas, probable sensor 97.2 8.4E-07 2.9E-11 74.2 0.0 46 245-294 174-222 (305)
104 2w0n_A Sensor protein DCUS; si 97.9 1.6E-06 5.4E-11 60.7 0.7 47 243-292 17-66 (118)
105 2jhe_A Transcription regulator 97.9 3.3E-06 1.1E-10 65.2 2.1 48 243-293 82-129 (190)
106 3k3c_A Protein RV1364C/MT1410; 97.9 5.6E-06 1.9E-10 61.5 3.0 46 243-293 19-65 (158)
107 2z6d_A Phototropin-2; PAS-fold 97.9 3.9E-06 1.3E-10 59.0 1.9 51 243-293 8-58 (130)
108 3lyx_A Sensory BOX/ggdef domai 97.9 5.6E-06 1.9E-10 57.7 2.4 45 243-290 9-53 (124)
109 3kx0_X Uncharacterized protein 97.8 8.5E-06 2.9E-10 62.6 2.9 46 243-293 39-85 (185)
110 3a0r_A Sensor protein; four he 97.8 3.5E-06 1.2E-10 71.6 0.8 47 243-292 10-56 (349)
111 1v9y_A Heme PAS sensor protein 97.8 1.1E-05 3.6E-10 60.1 3.1 48 243-293 42-89 (167)
112 2v0u_A NPH1-1, LOV2; kinase, t 97.8 1.2E-05 4.3E-10 57.7 2.8 51 243-293 4-54 (146)
113 1oj5_A Steroid receptor coacti 97.7 3.3E-05 1.1E-09 54.9 4.6 98 30-131 9-110 (132)
114 2qkp_A Uncharacterized protein 97.7 8.4E-06 2.9E-10 60.7 1.5 46 243-292 21-69 (151)
115 3sw1_A Sensory box protein; li 97.7 7.3E-06 2.5E-10 61.0 0.9 48 243-293 27-77 (162)
116 2l0w_A Potassium voltage-gated 97.7 1.4E-05 4.9E-10 56.9 1.9 45 244-288 22-66 (138)
117 3eeh_A Putative light and redo 97.5 2.6E-05 9E-10 54.4 1.8 43 243-288 13-56 (125)
118 3nja_A Probable ggdef family p 97.5 5.7E-05 2E-09 52.9 3.1 41 243-286 9-49 (125)
119 3icy_A Sensor protein; sensory 97.4 5.5E-05 1.9E-09 52.6 1.9 44 243-289 6-49 (118)
120 4eho_A Bacteriophytochrome, PA 97.1 0.00016 5.4E-09 66.6 2.4 42 246-290 523-564 (635)
121 3h9w_A Diguanylate cyclase wit 97.1 0.00031 1.1E-08 48.7 3.3 34 251-286 3-36 (115)
122 3cax_A Uncharacterized protein 97.0 0.00015 5.1E-09 62.2 0.7 45 243-292 241-285 (369)
123 3mr0_A Sensory box histidine k 96.6 0.0013 4.4E-08 47.7 3.1 42 243-287 11-52 (142)
124 2ool_A Sensor protein; bacteri 91.1 0.097 3.3E-06 43.9 2.3 32 263-294 52-83 (337)
125 2ool_A Sensor protein; bacteri 89.6 0.4 1.4E-05 40.1 4.8 40 32-73 46-85 (337)
126 1oj5_A Steroid receptor coacti 89.6 0.15 5E-06 36.2 1.8 34 263-297 16-51 (132)
127 4ew7_A Conjugative transfer: r 83.3 4.6 0.00016 26.9 6.2 37 19-58 21-57 (127)
128 4dah_A Sporulation kinase D; a 68.8 35 0.0012 25.7 10.5 96 17-138 57-154 (217)
129 4e04_A Bacteriophytochrome (li 66.8 20 0.00068 29.7 7.4 52 30-88 31-82 (327)
130 4ew7_A Conjugative transfer: r 64.4 6.6 0.00023 26.1 3.2 28 250-280 29-56 (127)
131 3s7o_A Bacteriophytochrome; bi 63.9 3.3 0.00011 34.6 2.2 33 262-294 61-93 (343)
132 4e04_A Bacteriophytochrome (li 57.9 4.8 0.00016 33.4 2.1 38 254-294 32-69 (327)
133 3s7o_A Bacteriophytochrome; bi 50.2 7 0.00024 32.6 1.9 41 30-72 54-94 (343)
134 3zq5_A Phytochrome-like protei 46.0 8.5 0.00029 34.2 1.9 33 262-294 38-70 (520)
135 3c38_A Autoinducer 2 sensor ki 36.1 1.3E+02 0.0043 24.0 6.9 90 24-138 77-166 (270)
136 2hje_A Autoinducer 2 sensor ki 34.8 1.5E+02 0.0053 22.7 8.1 87 24-135 58-144 (221)
137 3clo_A Transcriptional regulat 34.0 12 0.0004 29.7 0.8 30 253-284 45-74 (258)
138 2joi_A Hypothetical protein TA 33.8 13 0.00046 25.3 0.9 16 270-285 97-112 (118)
139 3nhq_A Bacteriophytochrome; ph 32.2 95 0.0032 27.4 6.3 36 31-71 29-65 (505)
140 3zq5_A Phytochrome-like protei 31.8 14 0.00047 32.9 0.9 41 30-72 31-71 (520)
141 3pxp_A Helix-turn-helix domain 26.0 82 0.0028 25.5 4.5 36 17-55 98-133 (292)
142 3lif_A Putative diguanylate cy 24.0 2.4E+02 0.0081 21.4 10.8 94 17-136 57-154 (254)
143 3clo_A Transcriptional regulat 21.6 60 0.002 25.5 2.9 42 18-61 33-74 (258)
144 2p08_A Signal transduction his 20.9 55 0.0019 22.2 2.2 35 255-295 15-49 (115)
145 3nhq_A Bacteriophytochrome; ph 20.1 55 0.0019 29.0 2.5 37 253-294 28-65 (505)
No 1
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.94 E-value=1.5e-26 Score=187.26 Aligned_cols=159 Identities=18% Similarity=0.329 Sum_probs=138.9
Q ss_pred EEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEEEEccCCCEEEEEE
Q 022384 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLF 110 (298)
Q Consensus 31 i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~~~ 110 (298)
|+++|.+ |+++++|+++++++||++++++|++...+.++.........+.+.+..+..+..++..+++||..+|+.+
T Consensus 2 i~i~D~~---g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 78 (227)
T 3ewk_A 2 VSITDLQ---GRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS 78 (227)
T ss_dssp EEEEETT---CBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE
T ss_pred EEEECCC---CcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee
Confidence 6788999 9999999999999999999999999877777777777777778888888999999999999999999999
Q ss_pred EEEEeecCCCCcEEEEEEEEecCchhhhhhhhcccccccCCcchhhhHHHHhhhhhccccchhhcccceeecCCCCCccc
Q 022384 111 KMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEI 190 (298)
Q Consensus 111 ~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~l~~~~~~~nr~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 190 (298)
...|+.+ .+|.+.+++++.+|||++|++|+++..
T Consensus 79 ~~~p~~d-~~g~~~~~~~~~~DIT~~k~~e~~l~~--------------------------------------------- 112 (227)
T 3ewk_A 79 TIVPLMD-NAGKPRQYISIRRDITAQKEAEAQLAR--------------------------------------------- 112 (227)
T ss_dssp EEEEEEC-SSSCEEEEEEEEEECTTTTHHHHHHHH---------------------------------------------
T ss_pred EEEEEEc-CCCCEEEEEEEEEehhhHHHHHHHHHH---------------------------------------------
Confidence 9999999 899999999999999999999554310
Q ss_pred ccCccccHHHHHHHHhhhhhhhHhhhhcccccceeeeccccCCCCCCccchhhhhhhcccccceEeeCCCCCCCceeeeh
Q 022384 191 EDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYAS 270 (298)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N 270 (298)
+...++...++++++|. +++|+++|
T Consensus 113 ----------------------------------------------------~~~~~~~~~~~i~~~d~---~g~i~~~N 137 (227)
T 3ewk_A 113 ----------------------------------------------------LKQAMDANSEMILLTDR---AGRIIYAN 137 (227)
T ss_dssp ----------------------------------------------------HHHHHHTCCSEEEEECT---TSCEEEEC
T ss_pred ----------------------------------------------------HHHHHhcCcCeEEEEcC---CCcEEEEc
Confidence 12244566778899999 99999999
Q ss_pred hhhhhhccccceeccchhhHHHH
Q 022384 271 DAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 271 ~af~~itGys~eE~~G~~~~~~~ 293 (298)
++|++++||+++|++|+++..+.
T Consensus 138 ~~~~~~~G~~~~e~~g~~~~~l~ 160 (227)
T 3ewk_A 138 PALCRFSGMAEGELLGQSPSILD 160 (227)
T ss_dssp HHHHHHHTCCTHHHHSSCGGGGB
T ss_pred hHHHHHhCCCHHHHcCCChhhcc
Confidence 99999999999999999876543
No 2
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.84 E-value=1.7e-19 Score=130.61 Aligned_cols=116 Identities=20% Similarity=0.380 Sum_probs=104.9
Q ss_pred HHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEE
Q 022384 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLL 97 (298)
Q Consensus 18 ~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 97 (298)
++++.++++++++|+++|.+ |+++++|+++++++||++++++|++...+.++.........+...+..+..+..++.
T Consensus 5 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 81 (120)
T 2gj3_A 5 EIFRQTVEHAPIAISITDLK---ANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGVLV 81 (120)
T ss_dssp HHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHhCCCeEEEECCC---CCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEEEE
Confidence 46888999999999999999 999999999999999999999999887777766666666677777888888999999
Q ss_pred EEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhh
Q 022384 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (298)
Q Consensus 98 ~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k 137 (298)
.++++|..+|+.+...|+.+ .+|.+.+++++.+|||++|
T Consensus 82 ~~~~dG~~~~~~~~~~pi~~-~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 82 NRRKDKTLYLAELTVAPVLN-EAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp EECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCSCC
T ss_pred EEcCCCCEEEEEEEEEEEEC-CCCCEEEEEEEeccCcccC
Confidence 99999999999999999998 8899999999999999986
No 3
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.81 E-value=9.4e-19 Score=135.20 Aligned_cols=128 Identities=25% Similarity=0.411 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEE
Q 022384 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (298)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (298)
+..++++.++++++++++++|.+.++|+++++|+++++++||++++++|+++..+.++.........+...+..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (176)
T 4hia_A 4 KQFEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQV 83 (176)
T ss_dssp HHHHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEE
Confidence 34567889999999999999986556999999999999999999999999988888888888888888888888999999
Q ss_pred EEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhhhc
Q 022384 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (298)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~l 143 (298)
++...+++|..+|+.+...|+.+ .+|.+.+++++++|||++|++|+++
T Consensus 84 e~~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~~~~~~DITe~k~~e~~~ 131 (176)
T 4hia_A 84 VLRNYRANDEPFDNLLFLHPVGG-RPDAPDYFLGSQFELGRSGNSEEAA 131 (176)
T ss_dssp EEEEECTTCCEEEEEEEEEEESS-BTTBCSEEEEEEEEESSSGGGHHHH
T ss_pred EEEEEcCCCCEEEEEEEEEEeeC-CCCCeEEEEEEEEECcHhhHHHHHH
Confidence 99999999999999999999998 7899999999999999999998874
No 4
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.81 E-value=1e-18 Score=128.63 Aligned_cols=119 Identities=35% Similarity=0.641 Sum_probs=100.3
Q ss_pred HHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEEEEcc
Q 022384 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (298)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 101 (298)
.++++++++|+++|.+.++|+++++|+++++++||++++++|++...+.++.........+...+..+..+..++..+++
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k 82 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKK 82 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 47899999999999971113999999999999999999999998877777666666666777778888888899999999
Q ss_pred CCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhhhc
Q 022384 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (298)
Q Consensus 102 dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~l 143 (298)
||..+|+.+...|+.+ . + +.+++++.+|||++|++|+++
T Consensus 83 dG~~~~~~~~~~~~~~-~-~-~~~~~~~~~DITe~k~~e~~l 121 (132)
T 2pr5_A 83 DGTMFWNELNIDPMEI-E-D-KTYFVGIQNDITKQKEYEKLL 121 (132)
T ss_dssp TSCEEEEEEEEEEEEE-T-T-EEEEEEEEEECHHHHHHHHHH
T ss_pred CCCeeeeEEEEEeccC-C-C-eeEEEEEEEeCcHHHHHHHHH
Confidence 9999999999999987 4 4 778999999999999997776
No 5
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.79 E-value=3.3e-18 Score=127.62 Aligned_cols=125 Identities=14% Similarity=0.205 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCC--CCCCCcCCCCCHHHHHHHHHHHHhCCCE
Q 022384 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNRRTIMEIREAIREERPI 92 (298)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (298)
.++++|+.+++.++.++|.+|.+ +..+++|+++.+++||+++++.+. .+..+++|++...+...+...+..+.++
T Consensus 6 ~se~rl~~~~~~~~~g~w~~d~~---~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~ 82 (142)
T 3mr0_A 6 ASEERFQLAVSGASAGLWDWNPK---TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTY 82 (142)
T ss_dssp ---CCHHHHHHHTTCEEEEECTT---TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHhCCcEEEEEEcC---CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCce
Confidence 45567888999999999999999 999999999999999999988763 3556788888888888888888888889
Q ss_pred EEEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhhhc
Q 022384 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (298)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~l 143 (298)
..++++.+++|...|+...+.|+.+ .+|.+.+++|+++|||++|++|++|
T Consensus 83 ~~e~r~~~~~G~~~w~~~~~~~~~d-~~g~~~~~~G~~~DITerk~~E~~L 132 (142)
T 3mr0_A 83 DVEYRVRTRSGDFRWIQSRGQALWN-SAGEPYRMVGWIMDVTDRKRDEDAL 132 (142)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHHHHHH
T ss_pred EEEEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEcCchHHHHHHHH
Confidence 9999999999999999999999998 8999999999999999999997766
No 6
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.78 E-value=4.1e-18 Score=129.89 Aligned_cols=121 Identities=39% Similarity=0.645 Sum_probs=110.5
Q ss_pred HHHHHHHHhhCCCEEEEEeC---CCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEE
Q 022384 17 TLWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (298)
Q Consensus 17 ~~~l~~~~~~~~~~i~~~d~---~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (298)
.++++.++++++++++++|. + |+++++|+++++++||++++++|+++..+.++.........+...+..+..+.
T Consensus 34 ~~~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 110 (166)
T 3ue6_A 34 DYSLVKALQMAQQNFVITDASLPD---NPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDTS 110 (166)
T ss_dssp CCHHHHHHHHTTSCEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHhcCCceEEEEEccCCC---CcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCceE
Confidence 45788999999999999999 7 99999999999999999999999998888888777777778888888889999
Q ss_pred EEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhh
Q 022384 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141 (298)
Q Consensus 94 ~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee 141 (298)
.++...+++|..+|+.+...|+.+ .+|.+.+++++++|||++|+++.
T Consensus 111 ~e~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~~~ 157 (166)
T 3ue6_A 111 VCLLNYRQDGTTFWNLFFVAGLRD-SKGNIVNYVGVQSKVSEDYAKLL 157 (166)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEECCBCCHHHHHHH
T ss_pred EEEEEEcCCCCEEEEEEEEEeeeC-CCCCEEEEEEEEEechHHHHHHH
Confidence 999999999999999999999998 78999999999999999999844
No 7
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.78 E-value=2e-18 Score=124.91 Aligned_cols=115 Identities=10% Similarity=0.128 Sum_probs=98.6
Q ss_pred HHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHH-hCCCEEEEEEE
Q 022384 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR-EERPIEVNLLN 98 (298)
Q Consensus 20 l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~ 98 (298)
...+++++++.+++.|.+ |+++|+|+++++++||++++++|+++..+++|++.......+...+. .+..+..++++
T Consensus 4 ~~ll~e~~~d~i~~~d~~---g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~ 80 (121)
T 3f1p_B 4 KGLNVCQPTRFISRHNIE---GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRF 80 (121)
T ss_dssp ----CCCCCEEEEEECTT---SBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEE
T ss_pred ccceecCCCceEEEECCC---ceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEE
Confidence 345789999999999999 99999999999999999999999998888999888777777777764 45578889999
Q ss_pred EccCCCEEEEEEEEEEeecCC-CCcEEEEEEEEecCchhhh
Q 022384 99 YKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (298)
Q Consensus 99 ~~~dg~~~~~~~~~~p~~~~~-~g~~~~~~~~~~DITe~k~ 138 (298)
++++|..+|+.....|+.+ . .|.+.+++++.+|||++|+
T Consensus 81 ~~~dG~~~w~~~~~~~~~~-~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 81 RSKNQEWLWMRTSSFTFQN-PYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp ECTTSCEEEEEEEEEEECC-TTCCCCCEEEEEEEECCCC--
T ss_pred EecCCCEEEEEEEEEEEEC-CCCCceeEEEEEeEEcccccC
Confidence 9999999999999999987 5 6788899999999999986
No 8
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.77 E-value=1.3e-17 Score=118.58 Aligned_cols=108 Identities=41% Similarity=0.805 Sum_probs=96.1
Q ss_pred CCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEEEEccCCCEE
Q 022384 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (298)
Q Consensus 27 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (298)
++++++++|...++|+++++|++|++++||+.++++|++...+.++.........++..+..+.++..+++.+++||+.+
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~ 81 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEE
Confidence 57899999953233999999999999999999999999977777777666667788888889999999999999999999
Q ss_pred EEEEEEEEeecCCCCcEEEEEEEEecCch
Q 022384 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (298)
Q Consensus 107 ~~~~~~~p~~~~~~g~~~~~~~~~~DITe 135 (298)
|+.+.+.|+.+ .+|.+.+++++.+|||+
T Consensus 82 ~~~~~~~pi~d-~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 82 WNLLTVTPIKT-PDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEEC-TTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEC-CCCCEEEEEEEEEeCCC
Confidence 99999999998 89999999999999996
No 9
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.76 E-value=1.4e-17 Score=137.00 Aligned_cols=121 Identities=30% Similarity=0.586 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhhCCCEEEEEeC---CCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCC
Q 022384 15 RYTLWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (298)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~---~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (298)
...++++.+++++|++++++|. + |+++++|+++++++||++++++|+++..+.++.+.......+...+..+.+
T Consensus 60 ~~~~~~~~i~~~~~~~i~~~d~~~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 136 (258)
T 3p7n_A 60 PPAQWVLDLIEASPIASVVSDPRLAD---NPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKP 136 (258)
T ss_dssp -CCHHHHHHHHTCSSEEEEECTTSTT---CCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHhcCCccEEEEcCCCCC---CcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCC
Confidence 3456789999999999999999 7 899999999999999999999999988888888888888888888889999
Q ss_pred EEEEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhh
Q 022384 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (298)
Q Consensus 92 ~~~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ 139 (298)
+..+++..+++|..+|+.+...|+.+ .+|.+.+++++++|||++|..
T Consensus 137 ~~~e~~~~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITerk~~ 183 (258)
T 3p7n_A 137 VLVEILNYKKDGTPFRNAVLVAPIYD-DDDELLYFLGSQVEVDDDQPN 183 (258)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEC-TTSCSEEEEEEEEEC------
T ss_pred eEEEEEEEcCCCCEEEEeeEEEEEEc-CCCCEEEEEEEeeecchhhhh
Confidence 99999999999999999999999998 899999999999999999433
No 10
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.76 E-value=9.8e-18 Score=122.06 Aligned_cols=117 Identities=38% Similarity=0.664 Sum_probs=102.9
Q ss_pred HHhhCCCEEEEEeC---CCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEEEE
Q 022384 23 ALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99 (298)
Q Consensus 23 ~~~~~~~~i~~~d~---~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 99 (298)
++++++++++++|. + |+++++|+++++++||+.++++|+++..+.++.........+...+..+..+..++...
T Consensus 2 ~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 78 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPD---NPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINY 78 (128)
T ss_dssp CCCCCSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccCcccEEEecCCCCC---CcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEE
Confidence 46789999999999 7 99999999999999999999999998888877777777778888888888898999999
Q ss_pred ccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhhhc
Q 022384 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (298)
Q Consensus 100 ~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~l 143 (298)
+++|..+|+.+...|+.+ .+|.+.+++++++|||++|++|++.
T Consensus 79 ~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~e~~~ 121 (128)
T 3t50_A 79 KKSGEAFWNRLHISPVHN-ANGRLQHFVSSQLDVTLELVPRGSL 121 (128)
T ss_dssp CTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHC-----
T ss_pred cCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEEcchhhhhhhhh
Confidence 999999999999999998 7899999999999999999997765
No 11
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.74 E-value=8.7e-18 Score=120.72 Aligned_cols=109 Identities=8% Similarity=0.162 Sum_probs=97.6
Q ss_pred CCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEEEEccCCCEE
Q 022384 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (298)
Q Consensus 27 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (298)
+++.+++.|.+ |+++++|+++++++||++++++|+++..+++|++.......+...+..+..+..++++++++|..+
T Consensus 8 ~~~~i~~~d~~---g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 8 SKTFLSEHSMD---MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGEEEEEECTT---CBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CccEEEEECCC---ceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 45788899999 999999999999999999999999988888888888777778888888877778899999999999
Q ss_pred EEEEEEEEeecCC-CCcEEEEEEEEecCchhhhh
Q 022384 107 WMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKHM 139 (298)
Q Consensus 107 ~~~~~~~p~~~~~-~g~~~~~~~~~~DITe~k~~ 139 (298)
|+.....|+.+ . +|.+.+++++.+|||++|++
T Consensus 85 w~~~~~~~~~d-~~~g~~~~iv~~~~DITer~~~ 117 (117)
T 3f1p_A 85 WLETQGTVIYN-PRNLQPQCIMCVNYVLSEIEKN 117 (117)
T ss_dssp EEEEEEEEEEE-TTTTEEEEEEEEEEECSCCBC-
T ss_pred EEEEeeEEEEC-CCCCCceEEEEEeeeccccccC
Confidence 99999999998 6 68888999999999999863
No 12
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.73 E-value=1.2e-16 Score=113.40 Aligned_cols=111 Identities=41% Similarity=0.778 Sum_probs=99.3
Q ss_pred HHhhCCCEEEEEeC---CCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEEEE
Q 022384 23 ALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99 (298)
Q Consensus 23 ~~~~~~~~i~~~d~---~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 99 (298)
.+++++++++++|. + |+++++|+++++++||++++++|+++..+.++.........+...+..+..+..+.+..
T Consensus 2 ~l~~~~~~i~~~d~~~~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPD---NPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINY 78 (115)
T ss_dssp ---CCCCSEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccCCCcEEEEcCCCCC---CcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEe
Confidence 47889999999999 8 99999999999999999999999998878877777777777888888888888899999
Q ss_pred ccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhh
Q 022384 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (298)
Q Consensus 100 ~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k 137 (298)
+++|..+|+.+...|+.+ .+|.+.+++++.+|||+++
T Consensus 79 ~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 79 TKSGKKFWNLLHLQPVRD-QKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp CTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECSCCC
T ss_pred cCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEeecccC
Confidence 999999999999999998 7899999999999999874
No 13
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.72 E-value=5.4e-17 Score=117.07 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=93.1
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCC--CCCCCCcCCCCCHHHHHHHHHHHHhCCCE
Q 022384 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG--RNGRMFQGPRTNRRTIMEIREAIREERPI 92 (298)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (298)
..+++++.+++.++.++|++|.+ +.++++|+++++++|+++++++| ..+..+.+|++.......+...+..+.++
T Consensus 4 ~~~~~l~~~~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (125)
T 3nja_A 4 MAEKLLHTAESDAGIGSWVLHME---SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPF 80 (125)
T ss_dssp -------------CCEEEEEETT---TTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCE
T ss_pred HHHHHHHHHHHhCCeeEEEEEcC---CCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCc
Confidence 34567888999999999999999 99999999999999999999988 33445567777777777777888888888
Q ss_pred EEEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhh
Q 022384 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (298)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~ 138 (298)
..++++.+++|...|+.+...|+.+ .+|.+.+++++++|||++|+
T Consensus 81 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 81 DVEYRIVRPDGQVRELLERNHIQRQ-ASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCC---
T ss_pred eEEEEEECCCCCEEEEEEeeEEEEC-CCCCEEEEEEEEEecccccC
Confidence 8899999999999999999999998 78999999999999999985
No 14
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.72 E-value=2.4e-17 Score=118.99 Aligned_cols=115 Identities=12% Similarity=0.093 Sum_probs=91.1
Q ss_pred HHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCC-HHHHHHHHHHHHhCCCEEEEEE
Q 022384 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN-RRTIMEIREAIREERPIEVNLL 97 (298)
Q Consensus 19 ~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~e~~ 97 (298)
.|+.+++++|.+++ ++.+ |+++++|+++++++||++++++|++...++++... ......+...+..+..+..+++
T Consensus 4 ~~~~~~~~~~~~i~-~~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 79 (120)
T 3mqq_A 4 DYKTAFHLAPIGLV-LSRD---RVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRI 79 (120)
T ss_dssp CHHHHHHHCSSEEE-EEET---TEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred hHHHHHhcCCceEE-EecC---CEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEE
Confidence 36789999999996 4778 99999999999999999999999997766654322 2334445566667778888999
Q ss_pred EEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhh
Q 022384 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (298)
Q Consensus 98 ~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ 139 (298)
+.+++|..+|+.+...|+. .++...+++++++|||++|++
T Consensus 80 ~~~~dG~~~~~~~~~~~~~--~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 80 MKRAGGELFWCHVTGRALD--RTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp EECTTSCEEEEEEEEEESS--TTSTTSSEEEEEEESCC----
T ss_pred EEeCCCCEEEEEEEEEECC--CCCCceeEEEEEEcccHhhcc
Confidence 9999999999999999994 356566789999999999986
No 15
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.71 E-value=5e-16 Score=111.89 Aligned_cols=123 Identities=37% Similarity=0.725 Sum_probs=104.3
Q ss_pred HHHHHHHHHhhCCCEEEEEe---CCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCE
Q 022384 16 YTLWVHEALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (298)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d---~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (298)
..+.++.++++++++++++| .+ |.++++|+++++++|++.++++|+++..+.++.........+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~i~~~d~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T 2z6d_A 4 VSQELKTALSTLQQTFVVSDATQPH---CPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSY 80 (130)
T ss_dssp ---CHHHHHHHTTCEEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhcccceeeeeccCCC---CcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcc
Confidence 34567889999999999999 88 9999999999999999999999999887777777777777777788888888
Q ss_pred EEEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhhh
Q 022384 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (298)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~ 142 (298)
..+.....++|..+|+.+...|+.+ .+|.+.+++++++|||+++++|++
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~e~e 129 (130)
T 2z6d_A 81 CGRLLNYKKDGTPFWNLLTVTPIKD-DQGNTIKFIGMQVEVSKYTEGVND 129 (130)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCTTC-----
T ss_pred eeEEEEEcCCCcEEEEEEEEEEEEC-CCCCeeEEEEEEecchHHHHhhcc
Confidence 8888888999999999999999998 789999999999999999998653
No 16
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.71 E-value=2.5e-16 Score=119.45 Aligned_cols=123 Identities=24% Similarity=0.444 Sum_probs=111.7
Q ss_pred HHHHHHHHhhCCCEEEEEeCCCCCC---cEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEE
Q 022384 17 TLWVHEALDELPDSFTITDPSISGH---PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (298)
Q Consensus 17 ~~~l~~~~~~~~~~i~~~d~~~~~g---~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (298)
.++++.++++++++++++|.+ | +++++|+++++++|++.++++|+++..+.++.........+...+..+..+.
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~~---~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEKE---GDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCR 100 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEEE---TTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHhhccCcEEEEeCC---CCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCc
Confidence 467889999999999999999 9 9999999999999999999999998777777777777777788888888888
Q ss_pred EEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhhhc
Q 022384 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (298)
Q Consensus 94 ~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~l 143 (298)
.++....++|..+|+.+...|+.+ .+|.+.+++++++|||++|++|+++
T Consensus 101 ~~~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DiTe~k~~e~~l 149 (162)
T 3sw1_A 101 EVLRNYRKDGSAFWNELSITPVKS-DFDQRTYFIGIQKDVSRQVELEREL 149 (162)
T ss_dssp EEEEEECTTCCEEEEEEEEEEEEC-SSSSCEEEEEEEEECHHHHHHHHHH
T ss_pred ceEEEECCCCCEEEEEEEEEEeec-CCCCEEEEEEEEEeCcHHHHHHHHH
Confidence 899889999999999999999998 7899899999999999999997776
No 17
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.71 E-value=1.4e-16 Score=114.79 Aligned_cols=112 Identities=20% Similarity=0.255 Sum_probs=79.1
Q ss_pred hCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCC----EEEEEEEEcc
Q 022384 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP----IEVNLLNYKK 101 (298)
Q Consensus 26 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~e~~~~~~ 101 (298)
+++++|+++|.+ |+|+++|+++++++||++++++|++...+.++.........+......+.. ...++..+++
T Consensus 1 ~~~d~i~~~d~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (119)
T 2vv6_A 1 TIPDAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRR 77 (119)
T ss_dssp -CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECT
T ss_pred CCcceEEEECCC---CeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeC
Confidence 368999999999 999999999999999999999999887776654433333333333333332 2346677899
Q ss_pred CCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhhhc
Q 022384 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (298)
Q Consensus 102 dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~l 143 (298)
||+.+|+.+++.|+.+ .+. .+++++++|||++|++|++|
T Consensus 78 dG~~~~~~~~~~~~~~--~~~-~~~~~~~~DITerk~~e~~l 116 (119)
T 2vv6_A 78 DGTTFPMHLSIGEMQS--GGE-PYFTGFVRDLTEHQQTQARL 116 (119)
T ss_dssp TSCEEEEEEEEEEEEE--TTE-EEEEEEEEECC---------
T ss_pred CCCEEEEEEEEEEEEE--CCe-EEEEEEEEEcHHHHHHHHHH
Confidence 9999999999999976 333 46889999999999998876
No 18
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.71 E-value=5e-16 Score=111.05 Aligned_cols=120 Identities=20% Similarity=0.256 Sum_probs=103.8
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEE
Q 022384 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (298)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (298)
..++++.++++++++++++|.+ |.++++|+++++++|++.++++|++...+.++.........+...+..+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~i~~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (124)
T 3lyx_A 5 ILKQRAKAFDYVFDAIVVTDLQ---GFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTGE 81 (124)
T ss_dssp HHHHHHHGGGTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHhhcCceEEEECCC---CcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccce
Confidence 3457888999999999999999 9999999999999999999999998776666655555666677788888888889
Q ss_pred EEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhh
Q 022384 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (298)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ 139 (298)
.....++|..+|+.+...|+.+ .+|.+.+++++++|||++|+.
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~l 124 (124)
T 3lyx_A 82 IRMLHKDGHIGWIESMCVPIYG-ENYQMVGALGINRDITKRKKE 124 (124)
T ss_dssp EEEECTTSCEEEEEEEEEEEEC-STTCEEEEEEEEEECSCC---
T ss_pred EEEEccCCCEEEEEEEEEEEEC-CCCCEEEEEEEEecchhhhcC
Confidence 9999999999999999999998 789999999999999999863
No 19
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.70 E-value=2.8e-16 Score=115.10 Aligned_cols=124 Identities=17% Similarity=0.242 Sum_probs=95.1
Q ss_pred hhhhHHHhhhhHHHHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHH
Q 022384 4 QLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (298)
Q Consensus 4 ql~~~~~~~~~~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~ 83 (298)
++...++.+. +..++++.++++++++|+++|.+ |+|+++|+++++++||++++++|++...+.++.........+.
T Consensus 3 ~~~~~e~~l~-~~~~~~~~l~~~~~d~i~~~d~~---g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~ 78 (130)
T 1d06_A 3 HMLETEDVVR-ARDAHLRSILDTVPDATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQ 78 (130)
T ss_dssp HHHHHHHHHH-HHTSCHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHhhCcCeEEEECCC---CeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHH
Confidence 3445566665 55677899999999999999999 9999999999999999999999998877776554433333333
Q ss_pred HHHHhCCC----EEEEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 022384 84 EAIREERP----IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (298)
Q Consensus 84 ~~~~~~~~----~~~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DIT 134 (298)
.....+.. ...++..+++||+.+|+.+++.|+.+ .+. ..++++++|||
T Consensus 79 ~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~--~~~-~~~~~~~~DIT 130 (130)
T 1d06_A 79 RYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRS--GGE-RFFTGFIRDLT 130 (130)
T ss_dssp HHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEE--TTE-EEEEEEEEECC
T ss_pred HHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEE--CCe-EEEEEEEEECc
Confidence 44434332 23466778999999999999999976 333 46889999998
No 20
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.69 E-value=1.4e-16 Score=114.07 Aligned_cols=111 Identities=9% Similarity=0.083 Sum_probs=94.5
Q ss_pred CCCEEEEEe-CCCCCCcEEEcchHHHHHhCCCccccCCCC-CCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEEEEccCCC
Q 022384 27 LPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGT 104 (298)
Q Consensus 27 ~~~~i~~~d-~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~ 104 (298)
+++++|.+| .+ +++.|+|+++++++||+++++++.. +..+++|++...+...+...+..+.++..++++++++|.
T Consensus 2 a~~giw~~d~~~---~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~ 78 (115)
T 3h9w_A 2 TKAIPWKINWQT---MAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGH 78 (115)
T ss_dssp -CCEEEEEETTT---TEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSC
T ss_pred cceEEEEEEcCC---CcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCC
Confidence 468999999 55 8899999999999999999998832 344667777777777788888888889999999999999
Q ss_pred EEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhh
Q 022384 105 PFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141 (298)
Q Consensus 105 ~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee 141 (298)
.+|+...+.|+.+ .+|.+.+++|+..|||++|++|+
T Consensus 79 ~~w~~~~~~~~~d-~~G~~~~~~G~~~Dit~~k~~~~ 114 (115)
T 3h9w_A 79 YVWIRDVVHVVRD-DSGEVEALIGFMFDISLEHHHHH 114 (115)
T ss_dssp EEEEEEEEEEEEC-TTSCEEEEEEEEEECGGGGC---
T ss_pred EEEEEEEEEEEEC-CCCCEEEEEEEEeccCccccccc
Confidence 9999999999998 89999999999999999999864
No 21
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.69 E-value=1.1e-15 Score=109.96 Aligned_cols=110 Identities=11% Similarity=0.137 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEE
Q 022384 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (298)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (298)
.++++++.++++++++|+++|.+ |+++++|+++++++||++++++|+++..+.++.... ........+..+..+..
T Consensus 8 ~se~~~~~l~e~~~d~i~~~d~~---g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (117)
T 2r78_A 8 FQSNAYRALFEHAIDGIFIMDAE---GHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDSG-WAAASLARIVGGEPLRE 83 (117)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTTS-HHHHHHHHHHTTCCEEE
T ss_pred HhHHHHHHHHhcCCceEEEECCC---CCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccchh-HHHHHHHHHHcCCcEEE
Confidence 45678999999999999999999 999999999999999999999999876654433222 22233445566777888
Q ss_pred EEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 022384 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (298)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DIT 134 (298)
+.+.+++||+.+|+.++..|+. +|. ++++++|||
T Consensus 84 e~~~~~kdG~~~~v~~~~~~~~---~g~---~~~i~~DIT 117 (117)
T 2r78_A 84 ERTVWTRNGDQLTVELSAHLLP---DGK---ILGIARDVS 117 (117)
T ss_dssp EEEEECTTSCEEEEEEEEEECT---TSC---EEEEEEC--
T ss_pred EEEEEecCCCEEEEEEEEEEec---CCe---EEEEEEeCC
Confidence 8889999999999999999884 454 678889997
No 22
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.68 E-value=3.1e-16 Score=118.68 Aligned_cols=122 Identities=12% Similarity=0.125 Sum_probs=100.8
Q ss_pred HHHHHHHHHhhCCCEEEEEe-CCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEE
Q 022384 16 YTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (298)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d-~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (298)
..++++.+++++|.+++++| .+ |+++++|+++++++|++ +++|+++..++++.........+..++..+.+...
T Consensus 15 ~~~~~~~~~~~~~~~i~~~d~~~---~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 89 (158)
T 3k3c_A 15 AAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSG 89 (158)
T ss_dssp CHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEEE
T ss_pred HHHHHHHHHhcCCceEEEEECCC---cEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCcccc
Confidence 34678999999999999999 99 99999999999999999 89999977777765555566677778878877544
Q ss_pred E-EEE--Ecc-C-CCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhhhc
Q 022384 95 N-LLN--YKK-D-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (298)
Q Consensus 95 e-~~~--~~~-d-g~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~l 143 (298)
+ ... .+. + |...|+.+...|+.+ .+|.+.+++++++|||++|++|+++
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITe~k~~e~~l 142 (158)
T 3k3c_A 90 SEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRARQAA 142 (158)
T ss_dssp EEEEEEEESSSSCEEEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHHHHHH
T ss_pred cceeEEeccCCCCcceEEEEEEEEEeEC-CCCCEEEEEEEEEehhHHHHHHHHH
Confidence 3 222 222 2 677899999999998 7899999999999999999997776
No 23
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.67 E-value=2e-16 Score=118.94 Aligned_cols=120 Identities=16% Similarity=0.124 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEE
Q 022384 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (298)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (298)
+...+++.+++++++||+++|.+ |+|++||+++++++|+++++++|++...+++. ....+...+..++..|.+...
T Consensus 19 ~~~~~l~~il~~~~~gi~v~D~~---g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~ 94 (152)
T 3mxq_A 19 KSRLLLSELLDQLSFALCIVRND---YVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFS 94 (152)
T ss_dssp HHHHHHHHHHHHHCCEEEEEETT---SBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCC---CEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceee
Confidence 45567899999999999999999 99999999999999999999999998888876 555566667788887765432
Q ss_pred EEE---------E---EccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhh
Q 022384 95 NLL---------N---YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (298)
Q Consensus 95 e~~---------~---~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ 139 (298)
... . ..++|...|..+++.|+.+ .+|.+.+++.+++|||+++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d-~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 95 SWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHS-EDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp ECCSSSCSSCC----------CCEEEEEEEEEEEC-TTSCEEEEEEEEEEEECC---
T ss_pred ecccccccccccccCCCCCCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEECCHHHhc
Confidence 211 1 1245667788999999999 899999999999999999887
No 24
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.67 E-value=7.3e-16 Score=131.40 Aligned_cols=118 Identities=38% Similarity=0.729 Sum_probs=108.5
Q ss_pred HHHhhCCCEEEEEeC---CCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEEE
Q 022384 22 EALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98 (298)
Q Consensus 22 ~~~~~~~~~i~~~d~---~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 98 (298)
.++++++++++++|. + |+++++|+++++++||++++++|+++..+.++.........+...+..+..+..+++.
T Consensus 15 ~~~~~~~~~i~~~D~~~~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 91 (332)
T 2wkq_A 15 TTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLIN 91 (332)
T ss_dssp CCGGGCCSEEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred hHhhcCCCcEEEecCCCCC---CCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEE
Confidence 367899999999999 8 9999999999999999999999999888888887777777888888889999999999
Q ss_pred EccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhhhc
Q 022384 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (298)
Q Consensus 99 ~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~l 143 (298)
.+++|..+|+.+...|+.+ ..|.+.+++++.+|||++++++++.
T Consensus 92 ~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITe~k~~e~~~ 135 (332)
T 2wkq_A 92 YTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRDAAER 135 (332)
T ss_dssp ECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCHHHHH
T ss_pred EcCCCCEEEEeeEEEEeEc-CCCCEEEEEEEeccCchhhhhhhhc
Confidence 9999999999999999998 7899999999999999999987765
No 25
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.66 E-value=4e-15 Score=105.40 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=90.8
Q ss_pred HHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEE-E
Q 022384 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN-L 96 (298)
Q Consensus 18 ~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e-~ 96 (298)
++++.+++++|++++++|.+ |+++++|+++++++|+++++++|++...++ |.........+...+. +.....+ .
T Consensus 3 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~ 77 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDRE---MRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLA-GEVIRVEED 77 (114)
T ss_dssp HHHHHHHHTCSSEEEEEETT---CBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHT-TCCEEEEEE
T ss_pred HHHHHHHhcCCceEEEEcCC---cEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhc-CCcceeeee
Confidence 46888999999999999999 999999999999999999999999877666 4555555555555554 4444443 4
Q ss_pred EEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 022384 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (298)
Q Consensus 97 ~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DIT 134 (298)
....++|...|+.+...|+.+ .+|.+.+++++.+|||
T Consensus 78 ~~~~~~g~~~~~~~~~~p~~~-~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 78 CFVRADGRTQWLRWEVRPWYE-GEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEEC--CCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEcCCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeeCC
Confidence 778899999999999999998 7899999999999998
No 26
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.65 E-value=3.9e-15 Score=119.95 Aligned_cols=113 Identities=19% Similarity=0.448 Sum_probs=103.9
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEE
Q 022384 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (298)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (298)
..++++.++++++++++++|.+ |+++++|+++++++||++++++|++...+.++.........+++.+..+.+|.++
T Consensus 109 ~l~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 185 (227)
T 3ewk_A 109 QLARLKQAMDANSEMILLTDRA---GRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGR 185 (227)
T ss_dssp HHHHHHHHHHTCCSEEEEECTT---SCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHHHHHhcCcCeEEEEcCC---CcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEE
Confidence 3456778999999999999999 9999999999999999999999999888888888888888899999999999999
Q ss_pred EEEEccCCC------EEEEEEEEEEeecCCCCcEEEEEEEEec
Q 022384 96 LLNYKKDGT------PFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (298)
Q Consensus 96 ~~~~~~dg~------~~~~~~~~~p~~~~~~g~~~~~~~~~~D 132 (298)
+..++++|. .+|+.+++.|+.+ .+|.+.+++++.+|
T Consensus 186 ~~~~~k~G~~~~dg~~~~~~~~~~pi~d-~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 186 LLNRRRTGPAPHDAEDYWAEISTTPIHT-DGNGLVGYVQIQHD 227 (227)
T ss_dssp EEEEEECCSSSSCEEEEEEEEEEEEEEC-SSSCEEEEEEEEEC
T ss_pred EEEECCCCCcCcccceEEEEEEEEEEEC-CCCCEEEEEEEecC
Confidence 999999987 8999999999999 89999999999887
No 27
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.64 E-value=1.8e-15 Score=117.97 Aligned_cols=122 Identities=12% Similarity=0.125 Sum_probs=98.2
Q ss_pred HHHHHHHHHhhCCCEEEEEe-CCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEE
Q 022384 16 YTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (298)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d-~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (298)
..++++.+++++|++++++| .+ |+++++|+++++++|++ +++|+++..++++.........+..++..+.+...
T Consensus 35 ~~~~l~~l~~~~~~~i~~~d~~~---g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 109 (185)
T 3kx0_X 35 AAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQSG 109 (185)
T ss_dssp CHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEEE
T ss_pred hHHHHHHHHhcCCceEEEEECCC---cEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcccc
Confidence 45689999999999999999 99 99999999999999999 89999987777766655555667777777877654
Q ss_pred E-EEE--Ecc-C-CCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhhhc
Q 022384 95 N-LLN--YKK-D-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (298)
Q Consensus 95 e-~~~--~~~-d-g~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~l 143 (298)
+ ... .++ + |...|+.+...|+.+ .+|.+.+++++++|||++|++|+++
T Consensus 110 ~~~~~~~~~~~~gg~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITerk~~e~~~ 162 (185)
T 3kx0_X 110 SEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRARQAA 162 (185)
T ss_dssp EEEEEC--------CCEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTTCC--
T ss_pred cceeEEeeccCCCCccEEEEEEEEEEEC-CCCCEEEEEEEEEeCCHHHHHHHHH
Confidence 4 322 222 2 777899999999998 8899999999999999999998873
No 28
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.62 E-value=1.7e-15 Score=108.23 Aligned_cols=114 Identities=10% Similarity=0.061 Sum_probs=101.4
Q ss_pred HHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCC--CCCCcCCCCCHHHHHHHHHHHHhCCCEEE
Q 022384 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIEV 94 (298)
Q Consensus 17 ~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (298)
+++++.+++++|++++.+|.+ +.++++|+++++++||+++++.+.. +..+++|++.......+...+..+..+..
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~ 79 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDVS---GQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTL 79 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECTT---SCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEEcC---CCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceE
Confidence 457889999999999999999 9999999999999999999988764 34567777777777777788888888889
Q ss_pred EEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 022384 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (298)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DIT 134 (298)
++++.+++|...|+.....|+.+ .+|.+.+++++++|||
T Consensus 80 e~r~~~~~g~~~w~~~~~~~~~~-~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 80 VYRIVTPEGKLHWIEDHMRSSFS-DDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEecC
Confidence 99999999999999999999998 8899999999999998
No 29
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.62 E-value=5.9e-15 Score=108.66 Aligned_cols=116 Identities=39% Similarity=0.742 Sum_probs=104.4
Q ss_pred HHHHHhhCCCEEEEEeC---CCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEE
Q 022384 20 VHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (298)
Q Consensus 20 l~~~~~~~~~~i~~~d~---~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (298)
++.++++++.+++++|. + |.++++|+++++++|++.++++|+++..+.++.........+...+..+.++..++
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQL 80 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCC---ceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEE
Confidence 34578999999999999 8 99999999999999999999999998878777777777777788888888888888
Q ss_pred EEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhh
Q 022384 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (298)
Q Consensus 97 ~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ 139 (298)
....++|..+|+.+...|+.+ .+|.+.+++++++|||++++.
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~ 122 (146)
T 2v0u_A 81 INYTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRD 122 (146)
T ss_dssp EEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCH
T ss_pred EEEecCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeechHHHHH
Confidence 889999999999999999998 789999999999999999984
No 30
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.60 E-value=5.2e-14 Score=101.95 Aligned_cols=120 Identities=13% Similarity=0.163 Sum_probs=86.2
Q ss_pred hhhHHHhhhhHHHHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccC--CCCCCCCcCCCCCHHHHHHH
Q 022384 5 LGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEII--GRNGRMFQGPRTNRRTIMEI 82 (298)
Q Consensus 5 l~~~~~~~~~~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~i--g~~~~~l~~~~~~~~~~~~~ 82 (298)
....++.+. +++++++.+++++|++++++|.+ |+++++|+++++++||++++++ |++...+.+ +.......+
T Consensus 5 r~~~e~~L~-~~~~~~~~l~e~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~ 78 (126)
T 3bwl_A 5 RKRREKRLE-ETSSRLEALFENSPDMIDVLDAD---GTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQL 78 (126)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHhhCCcEEEEEcCC---CCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHH
Confidence 344555555 56778999999999999999999 9999999999999999999994 566555554 222221111
Q ss_pred HHHHHhCCCEEEEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 022384 83 REAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (298)
Q Consensus 83 ~~~~~~~~~~~~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DIT 134 (298)
.. ...+.....+..+.+++|..+|+.+...|+.. +|.. .++++++|||
T Consensus 79 ~~-~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~--~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 79 SG-FSVDERRKFEGLYERRDGSTMSVEVHLLRFNL--EGED-RFLAISRDIT 126 (126)
T ss_dssp HT-CCTTCEEEEEEEEECTTSCEEEEEEEEEEEEE--TTEE-EEEEEEEEC-
T ss_pred HH-HhcCCCcceEEEEEeCCCCEEEEEEEeEEEec--CCcE-EEEEEEEeCC
Confidence 11 11233345566778999999999988888754 5554 5788899997
No 31
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.59 E-value=1.4e-14 Score=104.22 Aligned_cols=111 Identities=10% Similarity=0.075 Sum_probs=93.7
Q ss_pred HHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCC-CEEEEEEEEcc
Q 022384 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-PIEVNLLNYKK 101 (298)
Q Consensus 23 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~ 101 (298)
+++++++++++.|.+ |+++++|+++++++||++++++|+++..+++|++.......+...+..+. ....+++++++
T Consensus 8 ~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~~ 84 (121)
T 2kdk_A 8 INVKPTEFITRFAVN---GKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRAK 84 (121)
T ss_dssp CCCCSSEEEEEECTT---SBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEECS
T ss_pred cccCCccEEEEECCC---eeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEc
Confidence 567889999999999 99999999999999999999999998888888777666666666666544 45778899999
Q ss_pred CCCEEEEEEEEEEeecCCC-CcEEEEEEEEecCchhh
Q 022384 102 DGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRK 137 (298)
Q Consensus 102 dg~~~~~~~~~~p~~~~~~-g~~~~~~~~~~DITe~k 137 (298)
+|..+|+.....|+.+ .. +.+..++++.+||++.+
T Consensus 85 dG~~~~~~~~~~~~~d-~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 85 DGSFVTLKSQWFSFTN-PDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp SSCEEEEEEEEEEEEC-CSSSCEEEEEEEEECCSSCC
T ss_pred CCCEEEEEEEEEEEEC-CCCCeeeEEEEEEEeccccC
Confidence 9999999999999987 54 45677889999998864
No 32
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.58 E-value=4.3e-15 Score=107.31 Aligned_cols=116 Identities=12% Similarity=0.118 Sum_probs=88.0
Q ss_pred HHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEEEEc
Q 022384 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100 (298)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 100 (298)
+.++++++++++++|.+ |+++++|+++++++|++.++++|+++..+.++.+.......+......+.. ..++....
T Consensus 2 ~~l~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (126)
T 3mjq_A 2 KNFLETIEDMILIINRE---GRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEK 77 (126)
T ss_dssp CTTGGGCSSEEEEEETT---SBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEEC
T ss_pred hhHHhhCCceEEEEeCC---CcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEc
Confidence 35789999999999999 999999999999999999999999877777766666555555565555544 67788888
Q ss_pred cCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhhhc
Q 022384 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (298)
Q Consensus 101 ~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~l 143 (298)
++|..+|+.+...|... .+ ..+++++++|||++|+++++.
T Consensus 78 ~~g~~~~~~~~~~~~~~--~~-~~~~~~~~~DITe~k~a~~~~ 117 (126)
T 3mjq_A 78 KEGTSIPAKARIWQGKW--HN-EPCLFAIIKDLSKEERASSPP 117 (126)
T ss_dssp TTSCEEEEEEEEEEEES--SS-SEEEEEEEEECC---------
T ss_pred cCCCEEEEEEEEEeeeE--CC-ceEEEEEEEechHHHHhhccc
Confidence 99999999998887754 33 467889999999999998776
No 33
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.58 E-value=3e-14 Score=101.59 Aligned_cols=109 Identities=10% Similarity=0.109 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEE
Q 022384 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (298)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (298)
+..++++.++++++++++++|.+ |+++++|+++++++||++++++|+++..+.++..... ...+..+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 81 (118)
T 3olo_A 10 LEFKFAHYLINNAVEASFCLGDN---WQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD-----WEEIRQKNNYTF 81 (118)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC-----HHHHHHHSEEEE
T ss_pred HHHHHHHHHHhcCCceEEEECCC---CcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH-----HHHHHhcCcEEE
Confidence 34456788999999999999999 9999999999999999999999998777765432222 223344556778
Q ss_pred EEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 022384 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (298)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DIT 134 (298)
+....+++|..+|+.+...|+.. .+. ..++++++|||
T Consensus 82 e~~~~~~~g~~~~~~~~~~~~~~--~~~-~~~~~~~~DIT 118 (118)
T 3olo_A 82 KTRYRSQSGRIFLVEMSLTFLED--QER-RFSCVFVREKS 118 (118)
T ss_dssp EEEEECTTCCEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred EEEEEccCCCEEEEEEEEEEEEE--CCc-cEEEEEEEeCC
Confidence 88889999999999999999976 443 46778999997
No 34
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.57 E-value=2.1e-14 Score=108.94 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCC---
Q 022384 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP--- 91 (298)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~--- 91 (298)
+..+++..+++.++++++++|.+ |.++++|+++++++|++.++++|+++..++++.........+......+..
T Consensus 37 ~~~~~~~~~l~~~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (167)
T 1v9y_A 37 AADGIFFPALEQNMMGAVLINEN---DEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVE 113 (167)
T ss_dssp ---CCHHHHHHTCSSEEEEECTT---SBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC-------
T ss_pred hhhHHHHHHHHhCCCCEEEECCC---CcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCccc
Confidence 34567889999999999999999 999999999999999999999999877777665544444444444443332
Q ss_pred -EEEEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhhhcc
Q 022384 92 -IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGM 144 (298)
Q Consensus 92 -~~~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~l~ 144 (298)
+..+.....++|..+|+.+...|+.. .|.. .++++++|||+++++|+++.
T Consensus 114 ~~~~~~~~~~~~g~~~~~~~~~~~~~~--~g~~-~~~~~~~DiT~~~~~e~~l~ 164 (167)
T 1v9y_A 114 GMSRELQLEKKDGSKIWTRFALSKVSA--EGKV-YYLALVRDASVEMAQKEQTR 164 (167)
T ss_dssp ---CEEEEECTTSCEEEEEEEEEEEEE--TTEE-EEEEEEEC------------
T ss_pred ccceEEEEEcCCCcEEEEEEEEEEEec--CCCE-EEEEEEecCcHHHHHHHHHH
Confidence 44567778899999999999999954 6665 48899999999999977763
No 35
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.56 E-value=1.7e-13 Score=99.81 Aligned_cols=114 Identities=26% Similarity=0.501 Sum_probs=97.1
Q ss_pred HHHHHHhhCCCEEEEEeC---CCCCCcEEEcchHHHHHhCCCccccCCCC--CCCCcCCCCCHHHHHHHHHHHHhCCCEE
Q 022384 19 WVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIE 93 (298)
Q Consensus 19 ~l~~~~~~~~~~i~~~d~---~~~~g~i~~~N~~~~~~~g~~~~e~ig~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (298)
.+...+++++.+++++|. + |+++++|+++++++|++.++++|++ ...+.++.........+...+..+..+.
T Consensus 20 ~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (138)
T 2l0w_A 20 TIIRKFEGQSRKFIIANARVEN---CAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEERK 96 (138)
T ss_dssp HHHHHHTTTTSEEEEEESSSTT---CBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCEE
T ss_pred HHHHHHhcCCCCEEEEecCCCC---CEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCce
Confidence 455567779999999999 8 9999999999999999999999998 5556566666665666677777777788
Q ss_pred EEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchh
Q 022384 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (298)
Q Consensus 94 ~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~ 136 (298)
.+.....++|..+|+.+...|+.+ .+|.+.+++++++|||++
T Consensus 97 ~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 97 VEIAFYRKDGSCFLCLVDVVPVKN-EDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEEEEEC
T ss_pred eEEEEECCCCCEEEEEEEEEEEeC-CCCCEEEEEEEEEeccCC
Confidence 888888999999999999999998 789999999999999975
No 36
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.55 E-value=2.5e-13 Score=94.55 Aligned_cols=107 Identities=27% Similarity=0.520 Sum_probs=89.6
Q ss_pred CEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCC--CCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEEEEccCCCEE
Q 022384 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (298)
Q Consensus 29 ~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (298)
.+++++|...++|+++++|+++++++|++.++++|++ ...+.++.........+...+..+..+..+.....++|..+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEE
Confidence 5788888743349999999999999999999999998 45455555555556667777778888888888889999999
Q ss_pred EEEEEEEEeecCCCCcEEEEEEEEecCchh
Q 022384 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (298)
Q Consensus 107 ~~~~~~~p~~~~~~g~~~~~~~~~~DITe~ 136 (298)
|+.+...|+.+ .+|.+.+++++.+|||++
T Consensus 82 ~~~~~~~~~~~-~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 82 LCLVDVVPVKN-EDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEEC-TTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEeec-CCCCEEEEEEEEEeccCC
Confidence 99999999998 789999999999999975
No 37
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.55 E-value=2.9e-14 Score=102.04 Aligned_cols=116 Identities=9% Similarity=0.060 Sum_probs=94.6
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCC--CCCCcCCCCCHHHHHHHHHHHHhCCCE
Q 022384 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPI 92 (298)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (298)
+..++++.++++++.+++++|.+ +|+++++|+++++++|+++++++|.+ +..+.+|++.......+.. +..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~i~~~d~~--~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (125)
T 3eeh_A 8 KSERRVRELTEATNDILWEFTAD--LSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LMDGESA 84 (125)
T ss_dssp --CHHHHHHHSCCCCEEEEEETT--SSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HHTTCCE
T ss_pred HHHHHHHHHHhcCCceEEEEEcC--CCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HHcCCCc
Confidence 45567899999999999999975 47999999999999999999998876 3444555444444444444 5567778
Q ss_pred EEEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 022384 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (298)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DIT 134 (298)
..+++...++|...|+.+...|+.+ ..|.+.+++++++|||
T Consensus 85 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 85 DVECRVNATEEYQRWVWIQGEPITN-DAGETVRVAGFARDIT 125 (125)
T ss_dssp EEEEEECGGGTTCEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred cEEEEEEcCCCCEEEEEEecEEEEC-CCCCEEEEEEEEEecC
Confidence 8888989999999999999999998 7899999999999997
No 38
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.54 E-value=3.1e-15 Score=137.76 Aligned_cols=117 Identities=14% Similarity=0.101 Sum_probs=104.2
Q ss_pred HHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEEE
Q 022384 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98 (298)
Q Consensus 19 ~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 98 (298)
++..++++++++++++|.+ |+++++|+++++++||+.++++|++.....++++... ...+.+.+..++.+.++++.
T Consensus 519 ~~~~lle~a~~~i~~~D~~---grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~~-~~~i~~~l~~g~~~~~E~~~ 594 (635)
T 4eho_A 519 QASSQVHASMQPVLITDAE---GRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESNDF-LRNVAELIDHGRGWRGEVLL 594 (635)
T ss_dssp SHHHHHHHCSSCCEEEETT---CCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTHH-HHHHHHHHHHCCCBCCCCEE
T ss_pred HHHHHHHhCCCcEEEECCC---CeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHHH-HHHHHHHHHcCCcEEEEEEE
Confidence 5667899999999999999 9999999999999999999999998666666665554 45566777888889999999
Q ss_pred EccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhh
Q 022384 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (298)
Q Consensus 99 ~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~e 140 (298)
+++||+.+|+.++..|+++ .+|.+.+++++.+|||+||++|
T Consensus 595 ~~~dG~~~~~~~~~~pv~d-~~G~v~g~v~i~~DITerK~aE 635 (635)
T 4eho_A 595 RGAGNRPLPLAVRADPVTR-TEDQSLGFVLIFSDATDRRTAD 635 (635)
T ss_dssp CCSSSSCEECCCCEEEECS-TTSSCCEEEECCCCCSSSCCCC
T ss_pred EccCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEeCchHhhCC
Confidence 9999999999999999999 8999999999999999999874
No 39
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.52 E-value=2.1e-13 Score=110.28 Aligned_cols=113 Identities=14% Similarity=0.190 Sum_probs=88.6
Q ss_pred HHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHh------------CCCccccCCCCCCCCcCCCCCHHHHHHHHH
Q 022384 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMS------------GFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (298)
Q Consensus 17 ~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~------------g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~ 84 (298)
..+++.++++++.+++++|.+ |+|+|+|+++++++ ||++++++|++...+.+. +.....++.
T Consensus 21 ~~~l~~iLd~~~~~vii~D~~---g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~---~~~~~~~~~ 94 (233)
T 3vol_A 21 MARIKSALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLA 94 (233)
T ss_dssp HHHHHHHHTTSSSEEEEEETT---SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS---HHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEECCC---CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC---HHHHHHHHH
Confidence 457888999999999999999 99999999999999 899999999998777642 222222332
Q ss_pred HHHhCCCEEEEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhhhc
Q 022384 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (298)
Q Consensus 85 ~~~~~~~~~~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~l 143 (298)
.+. ..+..++. .+|. |+.++..|+.+ .+|.+.+++++++|||+++++|+++
T Consensus 95 ~~~--~~~~~~~~---~~g~--~~~~~~~Pi~d-~~G~~~g~v~~~~DITe~~~~e~ei 145 (233)
T 3vol_A 95 NLT--GVHKAELN---LGGR--RFSLDVVPVFN-DANERLGSAVQWTDRTEEHRAEQEV 145 (233)
T ss_dssp TCC--SCEEEEEE---ETTE--EEEEEEEEEEC-TTCCEEEEEEEEEECHHHHHHHHHH
T ss_pred hcc--cceeEEEE---ECCE--EEEEEEEEEEC-CCCCEEEEEEEEehhhHHHHHHHHH
Confidence 221 23444433 2453 67899999998 8899999999999999999997765
No 40
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.49 E-value=1.7e-13 Score=117.89 Aligned_cols=65 Identities=9% Similarity=0.109 Sum_probs=56.5
Q ss_pred HHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHH
Q 022384 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (298)
Q Consensus 17 ~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~ 84 (298)
.++...++++++..+++++.+ |+++|+|+++..++||++++++|+++..+++|++...+...+..
T Consensus 85 ~~~~~~~l~a~~~~i~v~~~~---G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~ 149 (361)
T 4f3l_A 85 EEFTQLMLEALDGFFLAIMTD---GSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILST 149 (361)
T ss_dssp HHHHHHHHHHTTEEEEEEETT---SBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceEEEEcCC---ccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhcc
Confidence 345666889999999999999 99999999999999999999999999899999887776665544
No 41
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.49 E-value=1.9e-13 Score=99.92 Aligned_cols=112 Identities=11% Similarity=0.066 Sum_probs=83.8
Q ss_pred HHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCC------
Q 022384 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER------ 90 (298)
Q Consensus 17 ~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~------ 90 (298)
.+.++.++++++++|+++|.+ |+|+++|+++++++||++++++|+++..++++.+.......+......+.
T Consensus 6 ~~~l~~i~~~~~d~i~~~D~~---g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (129)
T 3mfx_A 6 LETIELFIQHLTEAMILVNAN---GFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPV 82 (129)
T ss_dssp HHHHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCS
T ss_pred HHHHHHHHhcCCceEEEECCC---CEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCccccccc
Confidence 356888999999999999999 99999999999999999999999998888877654432221111111111
Q ss_pred -CEEEEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCch
Q 022384 91 -PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (298)
Q Consensus 91 -~~~~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe 135 (298)
.+..++..+++||+.+|+.++++|+.+ +.. .++++++|+..
T Consensus 83 ~~~~~E~~~~rkdG~~~~velsis~i~~---~~~-~~v~~~~~~~~ 124 (129)
T 3mfx_A 83 QHPAQETTLICASGKAKDVELSISYIPG---HEP-MFVMVMHDLEH 124 (129)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEEEECS---SSC-EEEEEEEEC--
T ss_pred CCCceEEEEEcCCCCEEEEEEEEEEecC---CCc-EEEEEEechhh
Confidence 235688889999999999999999964 222 47788888753
No 42
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.47 E-value=1.1e-12 Score=97.69 Aligned_cols=106 Identities=34% Similarity=0.562 Sum_probs=91.2
Q ss_pred HHHhhCCCEEEEEe---CCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCC-----------CHHHHHHHHHHHH
Q 022384 22 EALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT-----------NRRTIMEIREAIR 87 (298)
Q Consensus 22 ~~~~~~~~~i~~~d---~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~-----------~~~~~~~~~~~~~ 87 (298)
.+++.. .+++++| .+ |+++++|+++++++||++++++|+++..+.++.. .......+...+.
T Consensus 30 ~~~~~~-~~i~~~d~~d~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (149)
T 3d72_A 30 GPVDTS-VALILCDLKQKD---TPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAID 105 (149)
T ss_dssp CSCCTT-SCEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHH
T ss_pred HhhcCC-ccEEEEeccCCC---CcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHH
Confidence 345554 8999999 67 9999999999999999999999999877777663 5666667777888
Q ss_pred hCCCEEEEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEec
Q 022384 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (298)
Q Consensus 88 ~~~~~~~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~D 132 (298)
.+..+..+....+++|..+|+.+...|+.+ .+|.+.+++++.+|
T Consensus 106 ~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~-~~g~~~~~v~~~~D 149 (149)
T 3d72_A 106 RNAEVQVEVVNFKKNGQRFVNFLTMIPVRD-ETGEYRYSMGFQCE 149 (149)
T ss_dssp HTCCEEEEEEEECTTCCEEEEEEEEEEEEC-TTSSEEEEEEECCC
T ss_pred CCCceEEEEEEECCCCCEEEEEEEEEEEEc-CCCCEEEEEEEEeC
Confidence 888888899999999999999999999998 78999999988776
No 43
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.45 E-value=8.7e-14 Score=100.32 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=74.5
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEE
Q 022384 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (298)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (298)
.+++++.+++++|++++++|.+ |+++++|+++++++|+++++++|+++..++++................+...
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTN---GTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT--- 90 (125)
T ss_dssp ---------CCSCCEEEEEETT---SBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE---
T ss_pred HHHHHHHHHhcCCCeEEEEcCC---CeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE---
Confidence 5668899999999999999999 9999999999999999999999999877763222222222224445555443
Q ss_pred EEEEccCCC-EEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 022384 96 LLNYKKDGT-PFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (298)
Q Consensus 96 ~~~~~~dg~-~~~~~~~~~p~~~~~~g~~~~~~~~~~DIT 134 (298)
...+|. ..|+.+...|+.+ +|...+++++++|||
T Consensus 91 ---~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 91 ---RSEDAVGGRHYHNQYIPVDS--HRKSDTFQLVSRDIT 125 (125)
T ss_dssp ---EEEEEETTEEEEEEEEESST--TTTTTEEEEEEEECC
T ss_pred ---EeEcCCCcEEEEEEEEeEec--CCCeEEEEEEEecCC
Confidence 122344 6788899999876 566678999999998
No 44
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.40 E-value=5.2e-13 Score=114.96 Aligned_cols=108 Identities=8% Similarity=0.097 Sum_probs=95.4
Q ss_pred CEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEEEEccCCCEEEE
Q 022384 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWM 108 (298)
Q Consensus 29 ~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~~~ 108 (298)
..++..+.+ |.++|+|+++..++||+++|++|+++..+++|++.......+...+..|.....++++++++|..+|+
T Consensus 252 ~f~~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vWv 328 (361)
T 4f3l_A 252 EFTSRHSLE---WKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIWL 328 (361)
T ss_dssp EEEEEECTT---SBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEEE
T ss_pred eeEEEEcCC---ceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEEE
Confidence 345556677 99999999999999999999999999889999888877777888888877777789999999999999
Q ss_pred EEEEEEeecCC-CCcEEEEEEEEecCchhhhhh
Q 022384 109 LFKMSLVFGKE-DGRATHFVAVQVPIVSRKHMR 140 (298)
Q Consensus 109 ~~~~~p~~~~~-~g~~~~~~~~~~DITe~k~~e 140 (298)
.....|+.+ . +|.+.+++++.+|||+++..+
T Consensus 329 ~~~~~~v~~-~~~g~~~~iv~~~~dITe~~~~~ 360 (361)
T 4f3l_A 329 QTHYYITYH-QWNSRPEFIVCTHTVVSYAEVRA 360 (361)
T ss_dssp EEEEEEEEC-TTTCCEEEEEEEEEECCHHHHHH
T ss_pred EEEEEEEEc-CCCCCeeEEEEEEEECChhHhhc
Confidence 999999998 5 789999999999999998764
No 45
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.40 E-value=8.4e-12 Score=89.92 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=78.5
Q ss_pred HHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhC------------CCccccCCCCCCCCcCCCCCHHHHHHHHH
Q 022384 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG------------FSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (298)
Q Consensus 17 ~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g------------~~~~e~ig~~~~~l~~~~~~~~~~~~~~~ 84 (298)
..+++.++++++++++++|.+ |+|+++|+++++++| |++++++|++...+.+. +.....+..
T Consensus 4 ~~rl~~il~~~~~gviv~D~~---g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~---~~~~~~~~~ 77 (121)
T 4hi4_A 4 MARIASALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLA 77 (121)
T ss_dssp HHHHHHHHTTSSSEEEEEETT---CBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSS---HHHHHHHHH
T ss_pred HHHHHHHHhcCCccEEEEcCC---CeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCC---HHHHHHHHh
Confidence 357889999999999999999 999999999999996 89999999987766542 222222222
Q ss_pred HHHhCCCEEEEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchh
Q 022384 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (298)
Q Consensus 85 ~~~~~~~~~~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~ 136 (298)
... ..+..++. .+|. ++.+...|+.+ .+|.+.+++++++|||++
T Consensus 78 ~~~--~~~~~~~~---~~~~--~~~~~~~pi~~-~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 78 NLT--GVHKAELN---LGGR--RFSLDVVPVFN-DANARLGSAVQWTDRTEE 121 (121)
T ss_dssp HCS--SCEEEEEE---ETTE--EEEEEEEEEEC-TTSCEEEEEEEEEECC--
T ss_pred CcC--CCcEEEEE---ECCE--EEEEEEEEEEC-CCCCEEEEEEEEEEecCC
Confidence 211 33443333 2443 45788999998 789999999999999974
No 46
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.39 E-value=1e-12 Score=111.31 Aligned_cols=48 Identities=10% Similarity=0.188 Sum_probs=40.5
Q ss_pred EEEEe-CCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHH
Q 022384 31 FTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81 (298)
Q Consensus 31 i~~~d-~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~ 81 (298)
+++++ .+ |+|+|+|+.+..++||++++++|+++.++++|++...+...
T Consensus 6 ~~vv~~~~---G~i~yvS~~~~~~LGy~~~el~G~s~~d~ihp~D~~~f~~~ 54 (339)
T 3rty_A 6 CCVISMHD---GIVLYTTPSITDVLGYPRDMWLGRSFIDFVHLKDRATFASQ 54 (339)
T ss_dssp EEEEETTT---CBEEEECTTHHHHHCCCTTSSTTSBGGGGBCHHHHHHHHHH
T ss_pred EEEEECCC---cEEEEEChHHHHHcCCCHHHHCCCcHHHhcCHHHHHHHHHH
Confidence 46677 57 99999999999999999999999998888888766654443
No 47
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.38 E-value=4.4e-12 Score=95.14 Aligned_cols=118 Identities=13% Similarity=0.124 Sum_probs=91.2
Q ss_pred HHHHHHHhhCCCEEEEEeCCCCCCcEEEcchH---HHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEE
Q 022384 18 LWVHEALDELPDSFTITDPSISGHPIVFASRG---FLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (298)
Q Consensus 18 ~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~---~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (298)
+.+..++++++.+|+++|.+ |+++|+|++ +++++| ..++++|++...+.++. .......+...++.+.....
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~---g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~-~~~~v~~i~~~l~~g~~~~~ 93 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKD---DIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPK-VLDKVKKVFELLRNGQRDKV 93 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETT---SBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHH-HHHHHHHHHHHHHTTSBSEE
T ss_pred HHHHHHHHhCCCceEEEcCC---CeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHH-HHHHHHHHHHHHHcCCccEE
Confidence 46888999999999999999 999999999 999999 56789999977665422 22223445666777776655
Q ss_pred EEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhhh
Q 022384 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (298)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~ 142 (298)
++.....+ ...++.++..|+.+ ++|.+.|.+.+++|||+.++.+++
T Consensus 94 ~~~~~~~~-~~~~v~v~~~Pi~d-~~G~~~G~vev~~Dit~l~~le~~ 139 (151)
T 2qkp_A 94 NMWFQSER-LGKFVYVTYAAVRD-QAGDFQGVLEYVQDIKPFFELDSE 139 (151)
T ss_dssp EEEEEETT-TTEEEEEEEEEEEC-TTCCEEEEEEEEEECGGGGGGGGC
T ss_pred EEEEecCC-CCeEEEEEEEEEEC-CCCCEEEEEEEEEECHHHHhhhhh
Confidence 55543332 12456788999998 789999999999999999988655
No 48
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.37 E-value=2.8e-12 Score=111.24 Aligned_cols=62 Identities=16% Similarity=0.241 Sum_probs=53.0
Q ss_pred HHHHHHHhhCCCEEEEEeC-CCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHH
Q 022384 18 LWVHEALDELPDSFTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82 (298)
Q Consensus 18 ~~l~~~~~~~~~~i~~~d~-~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~ 82 (298)
++...++++++..+++++. . |+++|+|+++..++||++++++|+++.++++|++...+...+
T Consensus 86 ~~~~~ll~~~~gfi~v~~~~~---G~i~yvs~~~~~~lG~~~~el~g~~~~~~ihp~D~~~~~~~L 148 (387)
T 4f3l_B 86 ELKHLILRAADGFLFVVGCDR---GKILFVSESVFKILNYSQNDLIGQSLFDYLHPKDIAKVKEQL 148 (387)
T ss_dssp HHHHHHHHTCCSEEEEEETTT---CBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEEEecCC---eEEEEEchhhHHHcCCCHHHHCCCcHHHhcCCCCHHHHHHHh
Confidence 3455678899999999986 5 999999999999999999999999999999998877665544
No 49
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.36 E-value=1.1e-12 Score=94.15 Aligned_cols=108 Identities=13% Similarity=0.060 Sum_probs=84.4
Q ss_pred HHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEE
Q 022384 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (298)
Q Consensus 17 ~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (298)
....+.+++++|++++++|.+ |+++++|+++++++|+++++++|+++..++++.........+..++..+.+...++
T Consensus 11 ~~~~~~il~~~~~~i~~~D~~---g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (118)
T 3fg8_A 11 SSGRENLYFQGGLGFMALDED---LRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTRV 87 (118)
T ss_dssp --CCCCSSSCTTCEEEEECTT---CBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEEEE
T ss_pred cchHHHHHhhCCceEEEECCC---CeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEEEE
Confidence 344567899999999999999 99999999999999999999999997777766555566667778888888877643
Q ss_pred EEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchh
Q 022384 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (298)
Q Consensus 97 ~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~ 136 (298)
.....+| .|+.+...|+. +| ++++++|||++
T Consensus 88 ~~~~~~g--~~~~~~~~p~~---~g----~v~~~~DITer 118 (118)
T 3fg8_A 88 DSLYSPG--MTIEVTAAADS---GA----LVVHFRDVTAE 118 (118)
T ss_dssp ECSSSTT--CEEEEEEEEET---TE----EEEEEEECSCC
T ss_pred EEEcCCC--eEEEEEEEEcC---Cc----EEEEEEeccCC
Confidence 3333355 46777788874 33 67889999985
No 50
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.36 E-value=1.6e-12 Score=92.29 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=68.8
Q ss_pred HHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEEEEcc
Q 022384 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (298)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 101 (298)
.+++++++.++++|.+ |+++|+|+++++++||++++++|+++..+.+|++.......+. ..+.....+++++++
T Consensus 3 ~lle~~~d~i~v~d~~---G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~~k 76 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASN---GRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFRFIKK 76 (111)
T ss_dssp ------CCEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEECT
T ss_pred chhhcCCCEEEEEcCC---CeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEEEEcC
Confidence 4789999999999999 9999999999999999999999999888888887665543322 223334567888999
Q ss_pred CCCEEEEEEEEEEeecCCCC
Q 022384 102 DGTPFWMLFKMSLVFGKEDG 121 (298)
Q Consensus 102 dg~~~~~~~~~~p~~~~~~g 121 (298)
||+.+|+..++.++.+ ..+
T Consensus 77 dG~~~wve~~~~~v~~-~~~ 95 (111)
T 2vlg_A 77 DHTIVWVEAAVEIVTT-RAE 95 (111)
T ss_dssp TSCEEEEEEEEEEC------
T ss_pred CCCEEEEEEEEEEEec-ccC
Confidence 9999999999999987 444
No 51
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.35 E-value=2.2e-12 Score=111.93 Aligned_cols=106 Identities=8% Similarity=0.019 Sum_probs=87.7
Q ss_pred EEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCC-EEEEEEEEccCCCEEEE
Q 022384 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IEVNLLNYKKDGTPFWM 108 (298)
Q Consensus 30 ~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~dg~~~~~ 108 (298)
.++..+.+ |.++|+|+++..++||+++|++|+++..+++|++.......+...+..+.. ...+++++++||..+|+
T Consensus 280 fi~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~vWv 356 (387)
T 4f3l_B 280 YVSRHAID---GKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFITL 356 (387)
T ss_dssp EEEEECTT---SBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEEEE
T ss_pred EEEEECCC---CEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEEEE
Confidence 55666777 999999999999999999999999988899988877777777777765554 45689999999999999
Q ss_pred EEEEEEeecCCCCcEEEEEEEEecCchhhh
Q 022384 109 LFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (298)
Q Consensus 109 ~~~~~p~~~~~~g~~~~~~~~~~DITe~k~ 138 (298)
.....++.++.+|.+.+++++.+|||+||.
T Consensus 357 ~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 357 RSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred EEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 999999998227889999999999999985
No 52
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.29 E-value=2.6e-11 Score=86.03 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=80.6
Q ss_pred HHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCE-EEEEEE
Q 022384 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI-EVNLLN 98 (298)
Q Consensus 20 l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~ 98 (298)
...++++++++++++|.+ |+++++|+++++++|++.++++|+++..++++... ....+...+..+... ..+..+
T Consensus 9 ~~~il~~~~~~i~~~D~~---g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG---LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTF 83 (115)
T ss_dssp HHHHHHHCSSEEEEECTT---CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE
T ss_pred HHHHHhhcCceEEEECCC---CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEE
Confidence 455899999999999999 99999999999999999999999986655543211 112344555566554 345555
Q ss_pred EccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 022384 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (298)
Q Consensus 99 ~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DIT 134 (298)
. ++|..+|+.+...|+.+ +|. .+++.+++||+
T Consensus 84 ~-~~g~~~~~~~~~~pi~~--~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 84 V-VDGRPLMLEVTVSPITW--QRQ-LMLLVEMRKID 115 (115)
T ss_dssp E-ETTEEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred e-cCCCEEEEEEEEEEeec--CCc-eEEEEEEEeCC
Confidence 5 78988999999999975 454 57888899985
No 53
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.19 E-value=1.2e-10 Score=100.36 Aligned_cols=116 Identities=18% Similarity=0.273 Sum_probs=92.3
Q ss_pred HHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEE
Q 022384 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (298)
Q Consensus 17 ~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 96 (298)
.+++..+++++++||+++|.+ |+|+++|++ ++++ ++.++++|+++..++++. .......+..++..+.....+.
T Consensus 238 ~~~l~~IL~~l~dgIivvD~~---g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~-~~~~~~~l~~~l~~g~~~~~~~ 311 (369)
T 3cax_A 238 IEELKAIFEALPVDVTFIDKD---DRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPK-SVYVVNKILKAFKEGRKKEATF 311 (369)
T ss_dssp HHHHHHHHHHSSSEEEEECTT---SBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGG-GHHHHHHHHHHHHHTSCSCEEE
T ss_pred HHHHHHHHHhCCCcEEEECCC---CcEEEEcCH-HHcc-CChHHHcCCcHHHHCChh-hHHHHHHHHHHHHcCCceEEEE
Confidence 356889999999999999999 999999999 9999 899999999988776543 2233344566677776654444
Q ss_pred EEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhhh
Q 022384 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (298)
Q Consensus 97 ~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~ 142 (298)
... .+| .++.++..|+.+ .+|.+.|++.+++|||+.++.+++
T Consensus 312 ~~~-~~g--~~v~v~~~PI~d-~~G~~~G~v~v~~DITe~~~le~~ 353 (369)
T 3cax_A 312 WLR-LRE--KYVYIKYVPLFN-EKGEYIGTLEMTMDIAPYKKIEGE 353 (369)
T ss_dssp EEE-ETT--EEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTCCSC
T ss_pred EEe-eCC--EEEEEEEEEEEC-CCCCEEEEEEEEEcCHHHHHHHHH
Confidence 433 345 477889999998 789999999999999999988554
No 54
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.18 E-value=1.7e-11 Score=104.79 Aligned_cols=117 Identities=8% Similarity=0.074 Sum_probs=86.9
Q ss_pred HHHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEE
Q 022384 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (298)
Q Consensus 16 ~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 95 (298)
+.++++.++++++++++++|.+ |+++++|+++++++||++++++|+++..+.++ ..........+..+.+....
T Consensus 6 ~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 79 (349)
T 3a0r_A 6 LRNFSESILESLETAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPVFLN 79 (349)
T ss_dssp ---CCCSSGGGSSSEEEEEESS---SBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCCEEE
T ss_pred HHHHHHHHHhhhcCeEEEECCC---CCEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCceeec
Confidence 3456778999999999999999 99999999999999999999999987776322 22333444555555554322
Q ss_pred EEEEccCCCEEEEEEEEEEeecCCCCcE-EEEEEEEecCchhhhhhhhc
Q 022384 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRA-THFVAVQVPIVSRKHMRNSG 143 (298)
Q Consensus 96 ~~~~~~dg~~~~~~~~~~p~~~~~~g~~-~~~~~~~~DITe~k~~ee~l 143 (298)
. ..+...|+.+...|+.+ ..|.. .+++++++|||+++++|+++
T Consensus 80 ~----~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~DiTe~~~~e~~~ 123 (349)
T 3a0r_A 80 F----YKFGERYFNIRFSPFRN-AKTQLLEGVIITIDDVTELYKYEEER 123 (349)
T ss_dssp C----CCBTTBCCEEEEEEECC-TTTTSSCEEEEEEECCSTTTTTTTTT
T ss_pred c----cccCceEEEEEEEEEEc-CCCceeeEEEEEEEechHHHHHHHHH
Confidence 1 12233477788899987 56654 58899999999999997776
No 55
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=99.10 E-value=6.6e-11 Score=83.93 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=73.6
Q ss_pred hCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHH-HHHh-CCCE---EEEEEEEc
Q 022384 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE-AIRE-ERPI---EVNLLNYK 100 (298)
Q Consensus 26 ~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~---~~e~~~~~ 100 (298)
+.+++|+++|.+ +|+|+++|+++++++||++++++|++...++++...... ..+.. .... +... ..++...+
T Consensus 6 ~~~~~i~~~d~~--~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T 1ll8_A 6 EFNKAIFTVDAK--TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDVV-EALSEEHMEADGHAAVVFGTVVDIIS 82 (114)
T ss_dssp TTTCEEEEEETT--TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHHH-HHTTSSTTSSSSCSSCCCSSSEEECC
T ss_pred CCCceEEEEECC--CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHHH-HHHHHHhhccCCcceeccCcEEEEEe
Confidence 345799999973 289999999999999999999999998888776544322 22211 1111 1111 23456788
Q ss_pred cCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 022384 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (298)
Q Consensus 101 ~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DIT 134 (298)
++|+.+|+.++..|+.+ .. . ..++++++|++
T Consensus 83 ~dG~~~~v~~~~~~~~~-~~-~-~~~v~~~~~~~ 113 (114)
T 1ll8_A 83 RSGEKIPVSVWMKRMRQ-ER-R-LCCVVVLEPVE 113 (114)
T ss_dssp TTCCCEEEECCEECCBS-SS-S-BEEEEEEEECC
T ss_pred cCCCEEEEEEEEEeecc-CC-c-cEEEEEEeecC
Confidence 99999999999999976 33 3 36788888875
No 56
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=99.07 E-value=3.1e-09 Score=71.48 Aligned_cols=95 Identities=8% Similarity=0.078 Sum_probs=70.2
Q ss_pred CCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEEEEccCCCEE
Q 022384 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (298)
Q Consensus 27 ~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg~~~ 106 (298)
++++++++|.+ |+++++|+++++++|++.++++|++...+ + . .......+...+..+..+... .. ++...
T Consensus 1 ~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~ 70 (96)
T 3a0s_A 1 METAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDL-P-D-FEEIGSVAESVFENKEPVFLN--FY--KFGER 70 (96)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGS-T-T-CHHHHHHHHHHHHHTCCEEEE--EE--EETTE
T ss_pred CCceEEEEcCC---CCEeehhHHHHHHhCCCHHHhcCCCHHHC-c-c-hHHHHHHHHHHhccCCeEEEE--EE--cCCcE
Confidence 47899999999 99999999999999999999999987666 2 2 233444555566666655322 22 34446
Q ss_pred EEEEEEEEeecCCCCc-EEEEEEEEec
Q 022384 107 WMLFKMSLVFGKEDGR-ATHFVAVQVP 132 (298)
Q Consensus 107 ~~~~~~~p~~~~~~g~-~~~~~~~~~D 132 (298)
|+.+...|+.+ .+|. +.+++++++|
T Consensus 71 ~~~~~~~p~~~-~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 71 YFNIRFSPFRN-AKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEEEC-TTTCCEEEEEEEEEC
T ss_pred EEEEEEEEeEc-CCCCeeeEEEEEecC
Confidence 88899999987 5554 5688888776
No 57
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.07 E-value=6.9e-10 Score=93.99 Aligned_cols=108 Identities=9% Similarity=0.037 Sum_probs=90.7
Q ss_pred CCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCC-----EEEEEEEEccC
Q 022384 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-----IEVNLLNYKKD 102 (298)
Q Consensus 28 ~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~e~~~~~~d 102 (298)
.+.++..+.+ |.++|+|+++..++||+++|++|+++..+++|++.......+...+..|.. ...++++++++
T Consensus 154 ~~fi~r~~~d---G~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kd 230 (339)
T 3rty_A 154 PKFAIRHTAT---GIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQN 230 (339)
T ss_dssp CEEEEEEETT---CBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTT
T ss_pred ceEEEEECCC---CeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccC
Confidence 4567778888 999999999999999999999999999999999888777777787876654 35689999999
Q ss_pred CCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhh
Q 022384 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (298)
Q Consensus 103 g~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~ 138 (298)
|..+|+.....++.++..+.+..+++.-+.++....
T Consensus 231 G~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~~ 266 (339)
T 3rty_A 231 GCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQ 266 (339)
T ss_dssp SCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCSS
T ss_pred CCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCCC
Confidence 999999999999987335677788888887776543
No 58
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=99.04 E-value=6.1e-11 Score=84.01 Aligned_cols=104 Identities=9% Similarity=0.083 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCC---CccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCC
Q 022384 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGF---SRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (298)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~---~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (298)
+..+.++.++++++++++++|.+ |+++++|+++++++|+ +.++++|+++..+.++.. +...+..+..
T Consensus 12 ~~~~~~~~il~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~ 81 (118)
T 2w0n_A 12 TLFEQRQAMLQSIKEGVVAVDDR---GEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTP 81 (118)
T ss_dssp TTHHHHHHHHHCCCCCCEEEBTT---TBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCC
T ss_pred HHHHHHHHHHhhccccEEEECCC---CcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCce
Confidence 34556788999999999999999 9999999999999997 788999998777665421 3344444443
Q ss_pred EEEEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCc
Q 022384 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (298)
Q Consensus 92 ~~~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DIT 134 (298)
..... ...+| .|+.+...|+.+ +|...+++++++|||
T Consensus 82 ~~~~~--~~~~~--~~~~~~~~p~~~--~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 82 RRDEE--ITIKD--RLLLINTVPVRS--NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCCC--EESSS--CEECCCEECCCC--SSCCCCEEECCCCCC
T ss_pred eccEE--EEECC--EEEEEeeceeee--CCEEEEEEEEEEeCC
Confidence 32111 12345 366778888875 677778889999997
No 59
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=99.02 E-value=7e-09 Score=73.98 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=74.5
Q ss_pred HHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCC-CcCCCCCHHHHHHHHHHHHhCCCEEEEEEE-
Q 022384 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQGPRTNRRTIMEIREAIREERPIEVNLLN- 98 (298)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~- 98 (298)
..++++++.|++++|.+ |+|++||.+++++.||++++++|+++.. +.+......+...+.+.+..|. +......
T Consensus 20 ~~~ld~l~~Gii~lD~~---g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGD---GNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYT 95 (125)
T ss_dssp HHHHTTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEE
T ss_pred HHHHhccCceEEEECCC---CEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 45799999999999999 9999999999999999999999999765 4444556667777888777666 4444444
Q ss_pred EccCCCEEEEEEEEEEeecCCCCcEEE
Q 022384 99 YKKDGTPFWMLFKMSLVFGKEDGRATH 125 (298)
Q Consensus 99 ~~~dg~~~~~~~~~~p~~~~~~g~~~~ 125 (298)
.+.+|++.++.+. +... .+|...+
T Consensus 96 ~~~~~~p~~v~i~--l~~~-~~~~~~~ 119 (125)
T 1nwz_A 96 FDYQMTPTKVKVH--MKKA-LSGDSYW 119 (125)
T ss_dssp ECTTSCCEEEEEE--EEEC-SSSSEEE
T ss_pred EcCCCCEEEEEEE--EEEc-CCCCEEE
Confidence 4788886665554 4444 5665543
No 60
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=99.02 E-value=4e-10 Score=87.72 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCC--CE
Q 022384 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER--PI 92 (298)
Q Consensus 15 ~~~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~ 92 (298)
+....++.+++++++|++++|.+ |+++++|+++++++|++.++++|+++..+.++... ...+..+. ..
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~~---g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~ 146 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMK---SKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF-------LRWLESEPQDSH 146 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTT---CBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCH-------HHHHHTCCCSCE
T ss_pred HHHHHHHHHHHhCCCcEEEEcCC---CCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCH-------HHHHhcCCCCCc
Confidence 44567899999999999999999 99999999999999999999999998777665321 12333333 23
Q ss_pred EEEEEEEccCCCEEEEEEEEEEeecCCCCc----EEEEEEEEecCchhhh
Q 022384 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGR----ATHFVAVQVPIVSRKH 138 (298)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~p~~~~~~g~----~~~~~~~~~DITe~k~ 138 (298)
..++.. +|. ++.+...|+.+ .+|. +.+++++++|||++++
T Consensus 147 ~~~~~~---~g~--~~~~~~~pi~~-~~~~~~~~~~g~v~~~~DiTe~~~ 190 (190)
T 2jhe_A 147 NEHVVI---NGQ--NFLMEITPVYL-QDENDQHVLTGAVVMLRSTIRMGR 190 (190)
T ss_dssp EEEEEE---TTE--EEEEEEEEETT-TTEEEEEEEE-HHHHHHHHTTTCC
T ss_pred ceEEEE---CCe--EEEEEEEEEEe-cCCCCcceEEeEEEEEeccchhcC
Confidence 333332 564 35577889865 4554 6677788899998763
No 61
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=99.00 E-value=2.9e-09 Score=76.14 Aligned_cols=98 Identities=14% Similarity=0.058 Sum_probs=73.8
Q ss_pred HHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCC-CcCCCCCHHHHHHHHHHHHhCCCEEEEEEE-
Q 022384 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQGPRTNRRTIMEIREAIREERPIEVNLLN- 98 (298)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~- 98 (298)
..++++++.|++++|.+ |+|++||.+++++.||++++++|+++.. +.+......+...+.+.+..|. +......
T Consensus 25 ~~~ld~l~~GiivlD~d---g~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv 100 (129)
T 1mzu_A 25 TAEFDALPVGAIQVDGS---GVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFV 100 (129)
T ss_dssp CTTGGGCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEE
T ss_pred HHHHhccCceEEEECCC---CeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 34699999999999999 9999999999999999999999999765 4444555667777888887666 4444444
Q ss_pred EccCCCEEEEEEEEEEeecCCCCcEEE
Q 022384 99 YKKDGTPFWMLFKMSLVFGKEDGRATH 125 (298)
Q Consensus 99 ~~~dg~~~~~~~~~~p~~~~~~g~~~~ 125 (298)
.+.+|++.++.+ .+... .+|...+
T Consensus 101 ~~~~~~p~~v~i--~l~~~-~~~~~~~ 124 (129)
T 1mzu_A 101 FDFQMAPVRVQI--RMQNA-GVPDRYW 124 (129)
T ss_dssp EECSSCEEEEEE--EEEEC-SSTTEEE
T ss_pred EcCCCCEEEEEE--EEEEc-CCCCEEE
Confidence 478888666554 44444 5666543
No 62
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.94 E-value=2.6e-09 Score=89.27 Aligned_cols=58 Identities=7% Similarity=-0.062 Sum_probs=39.5
Q ss_pred HHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHH
Q 022384 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82 (298)
Q Consensus 23 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~ 82 (298)
+++++..-+++++.+ +|+++|+|+.+..++||++++++|+++.++.+|+|...+...+
T Consensus 20 ll~a~dgF~~vvs~~--~G~i~yvS~s~~~~Lg~~~~el~g~s~~d~iHp~D~~~~~~~L 77 (309)
T 3gdi_A 20 IVKNADMFAVAVSLV--SGKILYISNQVASIFHCKKDAFSDAKFVEFLAPHDVSVFHSYT 77 (309)
T ss_dssp ---CTTEEEEEECTT--TCBEEEECTTTTTTC-------CCSBGGGGBCTTTHHHHHHHT
T ss_pred HHHhcCCEEEEEECC--CceEEEECCHHHHHcCCCHHHHcCCchhhccCHhHHHHHHHhc
Confidence 566666667777763 3999999999999999999999999999999999877666544
No 63
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.94 E-value=3.6e-09 Score=88.76 Aligned_cols=55 Identities=13% Similarity=-0.032 Sum_probs=45.7
Q ss_pred HhhCCCEEEEEeC-CCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHH
Q 022384 24 LDELPDSFTITDP-SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIME 81 (298)
Q Consensus 24 ~~~~~~~i~~~d~-~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~ 81 (298)
++++..-++++.. + |+++|+|+.+..++||++++++|++..++++|+|...+...
T Consensus 32 LqaldGF~~vvs~~~---G~i~yvS~sv~~~Lg~~~~~l~g~s~~d~iHp~D~~~f~~q 87 (320)
T 4dj2_A 32 LRNQDTFSVAVSFLT---GRIVYISEQAGVLLRCKRDVFRGARFSELLAPQDVGVFYGS 87 (320)
T ss_dssp TSCSSEEEEEEETTT---CBEEEECTHHHHHHTSCSTTTTTSBGGGGBCHHHHHHHHHH
T ss_pred HhccCCEEEEEECCC---ceEEEECcHHHHHhCcCHHHHcCCcHHHhcCHHHHHHHHHh
Confidence 5666655677776 6 99999999999999999999999999999988776665544
No 64
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.92 E-value=1.1e-08 Score=85.78 Aligned_cols=104 Identities=9% Similarity=0.047 Sum_probs=85.2
Q ss_pred CEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCC---EEEEEEEEccCCCE
Q 022384 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP---IEVNLLNYKKDGTP 105 (298)
Q Consensus 29 ~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~dg~~ 105 (298)
.-+...+.+ |+++|+|+++..++||.++|++|+++..+++|++.......+...++.+.. ...+++++++||..
T Consensus 175 ~Fitrh~~d---G~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~ 251 (317)
T 4dj3_A 175 IFTTTHTPG---CVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEY 251 (317)
T ss_dssp EEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCE
T ss_pred ceEEEecCC---CeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCE
Confidence 345566777 999999999999999999999999999999999988888778888876554 34689999999999
Q ss_pred EEEEEEEEEeecCCCCcEEEEEEEEecCch
Q 022384 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (298)
Q Consensus 106 ~~~~~~~~p~~~~~~g~~~~~~~~~~DITe 135 (298)
+|+.....++.+|..+.+..+++.-.-++.
T Consensus 252 vwvet~~~~~~np~s~~~e~II~~h~v~~~ 281 (317)
T 4dj3_A 252 VILDSSWSSFVNPWSRKVSFIIGRHKVRTS 281 (317)
T ss_dssp EEEEEEEEEEECSSSCCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEECCCCCcccEEEEEEEeccC
Confidence 999999999887335666677776654444
No 65
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.88 E-value=1.1e-08 Score=85.84 Aligned_cols=58 Identities=9% Similarity=-0.078 Sum_probs=48.1
Q ss_pred HHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHH
Q 022384 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEI 82 (298)
Q Consensus 23 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~ 82 (298)
+++++..-+++++.+ +|+++|+|+.+..++||++++++|+++.++++|.+...+...+
T Consensus 31 ~L~aldgF~~vvs~~--~G~i~yvS~~~~~~Lg~~~~el~g~s~~d~ihp~D~~~f~~ql 88 (317)
T 4dj3_A 31 TSKNTDTFAAVFSFL--SGRLVHISEQAALILNSKRGFLKSVHFVDLLAPQDVRAFYAHT 88 (317)
T ss_dssp HTSCTTEEEEEEETT--TCBEEEECTTHHHHTTCCHHHHHTSBGGGGBCGGGHHHHHHHT
T ss_pred HHhccCCEEEEEEcC--CcEEEEECCHHHHHcCCCHHHHcCCchhhhcChhhHHHHHHhh
Confidence 466666667777762 3999999999999999999999999999999998877765543
No 66
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=98.88 E-value=6e-10 Score=78.46 Aligned_cols=42 Identities=33% Similarity=0.600 Sum_probs=37.2
Q ss_pred cccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHH
Q 022384 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHST 291 (298)
Q Consensus 250 ~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~ 291 (298)
+.++|+|+|+..++++|+|+|++|+++|||+++|++|+++..
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~ 43 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRF 43 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGG
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchh
Confidence 467899999755689999999999999999999999998654
No 67
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=98.83 E-value=1.6e-09 Score=77.44 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=42.5
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTY 292 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~ 292 (298)
+...++.+.++|+++|. +++|+|+|++|++++||+++|++|+++..+
T Consensus 7 ~~~~~~~~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~elig~~~~~l 53 (120)
T 2gj3_A 7 FRQTVEHAPIAISITDL---KANILYANRAFRTITGYGSEEVLGKNESIL 53 (120)
T ss_dssp HHHHHHHCSSEEEEECT---TCBEEEECHHHHHHHCCCTTGGGGCBGGGG
T ss_pred HHHHHHhCCCeEEEECC---CCCEEeehHHHHHHHCcCHHHHcCCCHHHc
Confidence 45577888999999999 999999999999999999999999987665
No 68
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.83 E-value=2.4e-08 Score=83.41 Aligned_cols=104 Identities=9% Similarity=0.062 Sum_probs=85.6
Q ss_pred EEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCC-CEE-EEEEEEccCCCEEE
Q 022384 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-PIE-VNLLNYKKDGTPFW 107 (298)
Q Consensus 30 ~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~-~e~~~~~~dg~~~~ 107 (298)
.+...+.+ |+++|+|+++..++||.++|++|+++..+++|++.......+...+..+. ... .++++++++|..+|
T Consensus 167 Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 243 (309)
T 3gdi_A 167 FTTTHTPN---CLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYIT 243 (309)
T ss_dssp EEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEE
T ss_pred EEEEecCC---CeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEE
Confidence 45666777 99999999999999999999999998889999988777777777777554 455 58999999999999
Q ss_pred EEEEEEEeecCCCCcEEEEEEEEecCchh
Q 022384 108 MLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (298)
Q Consensus 108 ~~~~~~p~~~~~~g~~~~~~~~~~DITe~ 136 (298)
+.....++.+|..+.+..+++.-.-++..
T Consensus 244 vet~~~~~~np~s~~~e~ii~~h~v~~gp 272 (309)
T 3gdi_A 244 LDTSWSSFINPWSRKISFIIGRHKVRVGP 272 (309)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEEEECC
T ss_pred EEEEEEEEECCCCCcccEEEEEEEEccCC
Confidence 99998888763357777888877766654
No 69
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.79 E-value=1.8e-08 Score=84.52 Aligned_cols=106 Identities=9% Similarity=0.043 Sum_probs=85.7
Q ss_pred CEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhC-CCE-EEEEEEEccCCCEE
Q 022384 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREE-RPI-EVNLLNYKKDGTPF 106 (298)
Q Consensus 29 ~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~e~~~~~~dg~~~ 106 (298)
..+...+.+ |+++|+|+++..++||.++|++|+++..+++|++.......+...+..+ ... ..++++++++|..+
T Consensus 177 ~Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~v 253 (320)
T 4dj2_A 177 IFTTRHTPS---CLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYV 253 (320)
T ss_dssp EEEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEE
T ss_pred eEEEEecCC---ceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEE
Confidence 345566777 9999999999999999999999999989999988777777777776643 444 35899999999999
Q ss_pred EEEEEEEEeecCCCCcEEEEEEEEecCchhh
Q 022384 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (298)
Q Consensus 107 ~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k 137 (298)
|+.....++.+|..+.+..+++.-.-++...
T Consensus 254 wvet~~~~~~np~s~~~e~II~~h~v~~gp~ 284 (320)
T 4dj2_A 254 TMDTSWAGFVHPWSRKVAFVLGRHKVRTAPL 284 (320)
T ss_dssp EEECEEEEEECTTTCSEEEEEEEEEESSCCS
T ss_pred EEEEEEEEEECCCCCCccEEEEEEEEccCCC
Confidence 9999988888633577778888877666543
No 70
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=98.76 E-value=1.8e-09 Score=76.96 Aligned_cols=47 Identities=6% Similarity=-0.025 Sum_probs=41.8
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTY 292 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~ 292 (298)
+...++.+.++|+++|. +++|+++|++|++++||+++|++|+++..+
T Consensus 13 ~~~l~e~~~d~i~~~d~---~g~i~~vN~a~~~l~Gy~~~el~g~~~~~~ 59 (117)
T 2r78_A 13 YRALFEHAIDGIFIMDA---EGHYLDVNPAICSAIGYTRDEFLALDWGVL 59 (117)
T ss_dssp HHHHHHHCSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCBTTTT
T ss_pred HHHHHhcCCceEEEECC---CCCEEEecHHHHHHHCcCHHHHcCCCHHHh
Confidence 45578889999999999 999999999999999999999999976543
No 71
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=98.75 E-value=4.9e-09 Score=75.26 Aligned_cols=45 Identities=9% Similarity=0.036 Sum_probs=38.7
Q ss_pred hhhcccccceEeeCCCCCCCceeeehhhhhhhccccceec--cchhhHHH
Q 022384 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSN--RASMHSTY 292 (298)
Q Consensus 245 ~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~--~G~~~~~~ 292 (298)
..++.+.++++++|. +++|+++|++|++++||+++|+ +|++..++
T Consensus 21 ~l~e~~~~~i~~~d~---~g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~ 67 (126)
T 3bwl_A 21 ALFENSPDMIDVLDA---DGTICEVNQRFCAELGYDESEVLGRSIWEFDL 67 (126)
T ss_dssp HHHHHCSSEEEEECT---TCBEEEECHHHHHHHTCCGGGTTTSBGGGTBT
T ss_pred HHHhhCCcEEEEEcC---CCCEEEEcHHHHHHhCCCHHHHhhCCCchhhc
Confidence 456778889999999 9999999999999999999999 56765543
No 72
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=98.72 E-value=3.2e-09 Score=76.99 Aligned_cols=48 Identities=13% Similarity=0.049 Sum_probs=42.9
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+...++.+.++|+++|. ++.|+++|++|++++||+++|++|+++..++
T Consensus 18 ~~~l~~~~~d~i~~~d~---~g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~ 65 (130)
T 1d06_A 18 LRSILDTVPDATVVSAT---DGTIVSFNAAAVRQFGYAEEEVIGQNLRILM 65 (130)
T ss_dssp HHHHHTTCSSEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGGS
T ss_pred HHHHHhhCcCeEEEECC---CCeEEEEcHHHHHHHCCCHHHHcCCcHHHHC
Confidence 45577888999999999 9999999999999999999999999876653
No 73
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=98.71 E-value=3.8e-09 Score=76.86 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=44.9
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHHh
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYLK 294 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~~ 294 (298)
+...++.+.++|+++|. +|+|+++|++|++++||+++|++|+++.+++.
T Consensus 9 l~~i~~~~~d~i~~~D~---~g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~ 57 (129)
T 3mfx_A 9 IELFIQHLTEAMILVNA---NGFIRSCNQRSAELLDCPQVSLKGQDWRNFLT 57 (129)
T ss_dssp HHHHHTTCSSEEEEEET---TSBEEEECHHHHHHTTSCHHHHTTSBGGGGBC
T ss_pred HHHHHhcCCceEEEECC---CCEEEeEhHHHHHHHCcCHHHHcCCcHHHHcC
Confidence 56678889999999999 99999999999999999999999999887763
No 74
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=98.61 E-value=1.2e-08 Score=74.10 Aligned_cols=47 Identities=23% Similarity=0.413 Sum_probs=38.2
Q ss_pred hhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHH
Q 022384 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTY 292 (298)
Q Consensus 246 ~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~ 292 (298)
.++.+.++|+++|...++++|+|+|++|++++||+++|++|+++..+
T Consensus 4 ~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l 50 (132)
T 2pr5_A 4 MLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFL 50 (132)
T ss_dssp --CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGG
T ss_pred HHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhh
Confidence 56788899999998212349999999999999999999999987543
No 75
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=98.61 E-value=9.5e-09 Score=73.14 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=36.4
Q ss_pred cccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHH
Q 022384 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTY 292 (298)
Q Consensus 250 ~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~ 292 (298)
+.++|+++|. ++.|+++|++|++++||+++|++|+++..+
T Consensus 2 ~~d~i~~~d~---~g~i~~~N~a~~~l~G~~~~el~G~~~~~l 41 (119)
T 2vv6_A 2 IPDAMIVIDG---HGIIQLFSTAAERLFGWSELEAIGQNVNIL 41 (119)
T ss_dssp CCCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGG
T ss_pred CcceEEEECC---CCeEEEEhHHHHHHhCCCHHHHcCCCHHHh
Confidence 3578899999 999999999999999999999999987665
No 76
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.59 E-value=1.4e-08 Score=71.72 Aligned_cols=41 Identities=10% Similarity=0.173 Sum_probs=37.3
Q ss_pred cccceEeeCCCCCC-CceeeehhhhhhhccccceeccchhhHHHH
Q 022384 250 IKQSFVLIDPHLPD-MPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 250 ~~~~i~i~d~~~~~-~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
..++|+++|. + ++|+++|++|++++||+++|++|+++.+++
T Consensus 7 ~~~~i~~~d~---~~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~ 48 (114)
T 1ll8_A 7 FNKAIFTVDA---KTTEILVANDKACGLLGYSSQDLIGQKLTQFF 48 (114)
T ss_dssp TTCEEEEEET---TTCBEEEECTTHHHHHTCCTTTTTTSBGGGGS
T ss_pred CCceEEEEEC---CCCeEEEehHHHHHHhCCCHHHHcCCCHHHhc
Confidence 4468999999 8 999999999999999999999999887765
No 77
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=98.54 E-value=2e-08 Score=70.95 Aligned_cols=45 Identities=13% Similarity=0.078 Sum_probs=37.3
Q ss_pred hhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 246 ~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
.++.+.++++++|. +|.|+|+||++++++||+++|++|++..+++
T Consensus 4 lle~~~d~i~v~d~---~G~i~yvn~~~~~~lGy~~~el~G~~~~~~i 48 (111)
T 2vlg_A 4 PLQTKTDIHAVLAS---NGRIIYISANSKLHLGYLQGEMIGSFLKTFL 48 (111)
T ss_dssp -----CCEEEEECT---TSBEEEECTTHHHHHSCCHHHHTTSBGGGGB
T ss_pred hhhcCCCEEEEEcC---CCeEEEEChHHHHHhCCCHHHHcCCcHHHeE
Confidence 45677888999998 9999999999999999999999999887764
No 78
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.92 E-value=1.1e-08 Score=85.56 Aligned_cols=110 Identities=14% Similarity=0.106 Sum_probs=75.2
Q ss_pred HhhCCCEEEEEeCCCCCCcEEEcchHHHHHhC---CCccccCCCCCCCCcCCC---CCH--HHHHHHHHHHHh-CCCEEE
Q 022384 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSG---FSRAEIIGRNGRMFQGPR---TNR--RTIMEIREAIRE-ERPIEV 94 (298)
Q Consensus 24 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g---~~~~e~ig~~~~~l~~~~---~~~--~~~~~~~~~~~~-~~~~~~ 94 (298)
++++++|++++|.+ |+|+++|++++++++ ++ ++++|++...+.+.. ... .+...+...+.+ +.....
T Consensus 176 ~~~~~dGIivvD~~---G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~~ 251 (305)
T 2ykf_A 176 SPRAGDGFIRLDVD---GVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMRM 251 (305)
Confidence 56899999999999 999999999999985 44 688999877766532 100 111222223333 222222
Q ss_pred EEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhhhhhhcc
Q 022384 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGM 144 (298)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~~ee~l~ 144 (298)
+.. ..| .++.+...|+.+ +|...+++.+++|||+.++.|+++.
T Consensus 252 ei~---~~~--~~l~v~~~Pi~~--~g~~~G~Vvv~rDITE~~~lE~eL~ 294 (305)
T 2ykf_A 252 EVD---AGG--ATVLLRTLPLVV--AGRNVGAAILIRDVTEVKRRDRALI 294 (305)
Confidence 221 122 456678889876 5777888999999999999988773
No 79
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=98.50 E-value=3.1e-08 Score=69.78 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=42.2
Q ss_pred hhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 244 ~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
...++.+.++++++|. +++|+++|++|++++||+++|++|+++.+++
T Consensus 16 ~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~l~G~~~~el~g~~~~~~~ 62 (118)
T 3olo_A 16 HYLINNAVEASFCLGD---NWQFLYVNDATCRMTEYSREQLLSMNLQDID 62 (118)
T ss_dssp HHHHHHCSSEEEEECT---TSBEEEECHHHHHHHCCCHHHHTTCBGGGTB
T ss_pred HHHHhcCCceEEEECC---CCcEEEEHHHHHHHHCCCHHHHhCCChhhcc
Confidence 3467888899999999 9999999999999999999999999887654
No 80
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=98.50 E-value=3.5e-08 Score=73.81 Aligned_cols=48 Identities=10% Similarity=0.073 Sum_probs=44.1
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+...++++..||+++|. +++|+++|+++++++||+++|++||+..+++
T Consensus 24 l~~il~~~~~gi~v~D~---~g~I~~~N~a~~~~~G~~~~eviG~~~~~~~ 71 (152)
T 3mxq_A 24 LSELLDQLSFALCIVRN---DYVIVKVNEYFESRVIFDGETMQGKNILELF 71 (152)
T ss_dssp HHHHHHHHCCEEEEEET---TSBEEEECHHHHHTSSSCHHHHTTSBHHHHS
T ss_pred HHHHHhcCCCCEEEEcC---CCEEEEECHHHHHHHCcCHHHHCCCCHHHhc
Confidence 45578889999999999 9999999999999999999999999988765
No 81
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=98.45 E-value=6.4e-08 Score=68.92 Aligned_cols=45 Identities=0% Similarity=-0.087 Sum_probs=40.3
Q ss_pred hhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 246 ~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
.++++.+.+++.|+ +++|+|+|++|++++||+++|++|+++.+++
T Consensus 7 l~e~~~d~i~~~d~---~g~i~~~n~~~~~~~G~~~~el~g~~~~~~i 51 (121)
T 3f1p_B 7 NVCQPTRFISRHNI---EGIFTFVDHRCVATVGYQPQELLGKNIVEFC 51 (121)
T ss_dssp -CCCCCEEEEEECT---TSBEEEECTTHHHHHSCCGGGTTTSBGGGGB
T ss_pred eecCCCceEEEECC---CceEEEECcchhhhhCCChHHHcCCCHHHeE
Confidence 46778889999999 9999999999999999999999999877664
No 82
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=98.44 E-value=6.8e-08 Score=68.71 Aligned_cols=48 Identities=13% Similarity=0.177 Sum_probs=43.8
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
....++.+.+++++.|. +++|+++|+++++++||++++++|+++.+++
T Consensus 14 ~~~il~~~~~~i~~~D~---~g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~ 61 (118)
T 3fg8_A 14 RENLYFQGGLGFMALDE---DLRIIYVNSGCLRHVRRSRDELLGRVVTEVL 61 (118)
T ss_dssp CCCSSSCTTCEEEEECT---TCBEEEECHHHHHHHTCCHHHHTTSBHHHHC
T ss_pred HHHHHhhCCceEEEECC---CCeEEEECHHHHHHhCCCHHHHcCCcHHHHc
Confidence 44567889999999999 9999999999999999999999999988776
No 83
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.42 E-value=8.6e-08 Score=68.54 Aligned_cols=48 Identities=8% Similarity=0.196 Sum_probs=43.5
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhcc------------ccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTD------------KGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itG------------ys~eE~~G~~~~~~~ 293 (298)
+...++.+.++|+++|. +++|+|+|++|++++| |++++++|++...++
T Consensus 7 l~~il~~~~~gviv~D~---~g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~ 66 (121)
T 4hi4_A 7 IASALDNVSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFH 66 (121)
T ss_dssp HHHHHTTSSSEEEEEET---TCBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGC
T ss_pred HHHHHhcCCccEEEEcC---CCeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhc
Confidence 56688999999999999 9999999999999986 999999999877765
No 84
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.38 E-value=1.1e-07 Score=68.01 Aligned_cols=43 Identities=7% Similarity=-0.042 Sum_probs=40.4
Q ss_pred hhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHH
Q 022384 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHST 291 (298)
Q Consensus 246 ~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~ 291 (298)
.++.+..|+++.|. +++|+++|++.++++||+++|++||++.+
T Consensus 27 ~ld~l~~GiivlD~---dg~I~~~N~~~e~isG~s~eeviGk~~f~ 69 (129)
T 1mzu_A 27 EFDALPVGAIQVDG---SGVIHRYNRTESRLSGRIPERVIGRNFFT 69 (129)
T ss_dssp TGGGCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCC
T ss_pred HHhccCceEEEECC---CCeEEEEHHHHHHHhCCCHHHHcCCchhh
Confidence 57889999999999 99999999999999999999999998854
No 85
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.37 E-value=1e-07 Score=67.94 Aligned_cols=44 Identities=11% Similarity=-0.002 Sum_probs=40.7
Q ss_pred hhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHH
Q 022384 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHST 291 (298)
Q Consensus 245 ~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~ 291 (298)
..++.+..|+++.|. +++|+++|++.++++||+++|++||++.+
T Consensus 21 ~~ld~l~~Gii~lD~---~g~I~~~N~~~e~~sG~~~~eviGk~~f~ 64 (125)
T 1nwz_A 21 GQLDGLAFGAIQLDG---DGNILQYNAAEGDITGRDPKQVIGKNFFK 64 (125)
T ss_dssp HHHTTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBCCC
T ss_pred HHHhccCceEEEECC---CCEEEEEHHHHHHHhCCCHHHHcCCchhh
Confidence 357889999999999 99999999999999999999999998854
No 86
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.36 E-value=1.6e-07 Score=66.04 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=43.1
Q ss_pred hhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 244 ~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
...++.+.++++++|. +++|+++|+++++++||+.++++|+++.+++
T Consensus 10 ~~il~~~~~~i~~~D~---~g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~ 56 (115)
T 3b33_A 10 SAILNNMVTATLILDD---GLAIRYANPAAELLFSQSAKRIVEQSLSQLI 56 (115)
T ss_dssp HHHHHHCSSEEEEECT---TCBEEEECHHHHHHTTSCHHHHTTCBHHHHC
T ss_pred HHHHhhcCceEEEECC---CCcEEEECHHHHHHhCCCHHHHhCCCHHHHh
Confidence 3467889999999999 9999999999999999999999999988775
No 87
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=98.35 E-value=1.6e-07 Score=65.40 Aligned_cols=48 Identities=35% Similarity=0.573 Sum_probs=39.6
Q ss_pred hhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 246 ~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+++.+.++++++|...++++|+++|++|++++||+.+|++|+++..++
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~ 49 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQ 49 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGC
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhc
Confidence 457788899999985568999999999999999999999999865543
No 88
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=98.34 E-value=1.3e-07 Score=67.18 Aligned_cols=47 Identities=6% Similarity=-0.085 Sum_probs=40.8
Q ss_pred hhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 244 ~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
...+++..+++++.|. ++.|+|+|++|++++||+++|++|+++.+++
T Consensus 6 ~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~G~~~~el~g~~~~~~~ 52 (121)
T 2kdk_A 6 GEINVKPTEFITRFAV---NGKFVYVDQRATAILGYLPQELLGTSCYEYF 52 (121)
T ss_dssp TCCCCCSSEEEEEECT---TSBEEEECTHHHHHTCCCTTTSBTSBTTTTB
T ss_pred cccccCCccEEEEECC---CeeEEEEChhHHHHHCCCHHHHcCCcHHHee
Confidence 3456677889999999 9999999999999999999999999876553
No 89
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.34 E-value=1.1e-07 Score=67.59 Aligned_cols=48 Identities=4% Similarity=-0.009 Sum_probs=40.6
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+...++.+.++++++|. +++|+++|++|++++||+.++++|+++.+++
T Consensus 21 ~~~i~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~ 68 (125)
T 3fc7_A 21 FESLVSDSPDGIVHLTT---NGTILSVNPSMAGRLGADPDTLVGQQLSAVM 68 (125)
T ss_dssp -----CCSCCEEEEEET---TSBEEEECHHHHHHHTSCHHHHTTSBGGGSS
T ss_pred HHHHHhcCCCeEEEEcC---CCeEEEECHHHHHHhCCCHHHHcCccHHHhC
Confidence 45577889999999999 9999999999999999999999999887765
No 90
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=98.32 E-value=2.8e-07 Score=64.09 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=43.5
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+...++.+..++++.|. +++|+++|++|++++||+.++++|+++.+++
T Consensus 5 ~~~~~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~ 52 (114)
T 3luq_A 5 LRLFTEHAPAALAMFDR---EMRYLAVSRRWREDYGLGDGDILGMSHYDIF 52 (114)
T ss_dssp HHHHHHTCSSEEEEEET---TCBEEEECHHHHHHTTCCSSCCTTCBHHHHC
T ss_pred HHHHHhcCCceEEEEcC---CcEEEEECHHHHHHHCCCHHHHcCCcHHHHC
Confidence 44567888999999999 9999999999999999999999999988775
No 91
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=98.32 E-value=1.1e-07 Score=67.60 Aligned_cols=47 Identities=9% Similarity=0.019 Sum_probs=39.8
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+...++....++++ |. +++|+++|++|++++||+++|++|+++..++
T Consensus 5 ~~~~~~~~~~~i~~-~~---~g~i~~~N~a~~~l~G~~~~el~g~~~~~~~ 51 (120)
T 3mqq_A 5 YKTAFHLAPIGLVL-SR---DRVIEDCNDELAAIFRCARADLIGRSFEVLY 51 (120)
T ss_dssp HHHHHHHCSSEEEE-EE---TTEEEEECHHHHHHTTSCHHHHTTCBGGGGS
T ss_pred HHHHHhcCCceEEE-ec---CCEEHHHHHHHHHHhCcCHHHhCCCchhhcc
Confidence 44567888889865 66 8999999999999999999999999876543
No 92
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=98.31 E-value=1.4e-07 Score=71.78 Aligned_cols=51 Identities=22% Similarity=0.288 Sum_probs=43.0
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+...++.+.++|+++|...++++|+++|++|++++||+.+|++|+++..++
T Consensus 9 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~ 59 (176)
T 4hia_A 9 IRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQ 59 (176)
T ss_dssp HHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGC
T ss_pred HHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceee
Confidence 445678889999999992233999999999999999999999999876554
No 93
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=98.29 E-value=2.4e-07 Score=74.45 Aligned_cols=49 Identities=10% Similarity=0.229 Sum_probs=44.3
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhc------------cccceeccchhhHHHHh
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT------------DKGKHSNRASMHSTYLK 294 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~it------------Gys~eE~~G~~~~~~~~ 294 (298)
+...++.+..+|+++|+ +++|+|+|++|++++ ||+++|++|+++..|+.
T Consensus 24 l~~iLd~~~~~vii~D~---~g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~ 84 (233)
T 3vol_A 24 IKSALDNVSANVMIADN---DLNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK 84 (233)
T ss_dssp HHHHHTTSSSEEEEEET---TSBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSS
T ss_pred HHHHHhcCCCcEEEECC---CCcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcC
Confidence 55678889999999999 999999999999987 89999999999887753
No 94
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=98.28 E-value=2.5e-07 Score=65.26 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=35.7
Q ss_pred ccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 251 KQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 251 ~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
.+.++++|+ +++|+|+|++|++++||+++|++|+++.+++
T Consensus 9 ~~~i~~~d~---~g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~ 48 (117)
T 3f1p_A 9 KTFLSEHSM---DMKFTYCDDRITELIGYHPEELLGRSAYEFY 48 (117)
T ss_dssp GEEEEEECT---TCBEEEECTHHHHHHCCCHHHHTTSBGGGGB
T ss_pred ccEEEEECC---CceEEEECcChhhhhCCCHHHHcCCchhheE
Confidence 466788998 9999999999999999999999999877654
No 95
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.21 E-value=4.7e-07 Score=76.59 Aligned_cols=51 Identities=37% Similarity=0.641 Sum_probs=44.5
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
.+..++.+.++++++|...++++|+|+|++|++++||+++|++|+++..++
T Consensus 13 ~~~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~ 63 (332)
T 2wkq_A 13 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQ 63 (332)
T ss_dssp -CCCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGC
T ss_pred HHhHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhc
Confidence 455778999999999986678999999999999999999999999876553
No 96
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=98.21 E-value=5e-07 Score=64.52 Aligned_cols=48 Identities=29% Similarity=0.403 Sum_probs=40.7
Q ss_pred hhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 246 ~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+++.+..+++++|...+++.|+++|++|++++||+.+|++|+++..++
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~ 49 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQ 49 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGC
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhc
Confidence 456778899999973337899999999999999999999999876654
No 97
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=98.19 E-value=5e-07 Score=67.70 Aligned_cols=51 Identities=35% Similarity=0.442 Sum_probs=43.9
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+...++.+.++++++|...+++.|+++|++|++++||+++|++|+++..++
T Consensus 37 ~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~ 87 (166)
T 3ue6_A 37 LVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQ 87 (166)
T ss_dssp HHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGC
T ss_pred HHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhhee
Confidence 566788899999999984446999999999999999999999999876543
No 98
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.19 E-value=4.5e-07 Score=66.82 Aligned_cols=46 Identities=26% Similarity=0.325 Sum_probs=38.0
Q ss_pred hcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 247 LGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 247 ~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
++.. .+++++|..+++++|+++|++|++++||+++|++|+++..++
T Consensus 32 ~~~~-~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~ 77 (149)
T 3d72_A 32 VDTS-VALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQ 77 (149)
T ss_dssp CCTT-SCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGG
T ss_pred hcCC-ccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhC
Confidence 3443 788999833349999999999999999999999999876654
No 99
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=98.18 E-value=8.1e-07 Score=72.32 Aligned_cols=51 Identities=20% Similarity=0.207 Sum_probs=43.1
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+...++.+.++++++|....+++|+|+|++|++++||+++|++|+++..++
T Consensus 65 ~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~ 115 (258)
T 3p7n_A 65 VLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLA 115 (258)
T ss_dssp HHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGC
T ss_pred HHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhcc
Confidence 556788899999999983336779999999999999999999999876543
No 100
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=98.17 E-value=6.9e-07 Score=63.38 Aligned_cols=46 Identities=17% Similarity=0.111 Sum_probs=42.1
Q ss_pred hhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 245 ~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
..++.+.++++++|. ++.|+++|++|++++||+.++++|+++.+++
T Consensus 3 ~l~~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~ 48 (126)
T 3mjq_A 3 NFLETIEDMILIINR---EGRLLYANTAVPKKLGYTHEELMSMHILTIT 48 (126)
T ss_dssp TTGGGCSSEEEEEET---TSBEEEECTHHHHHHSCCHHHHHHSBHHHHH
T ss_pred hHHhhCCceEEEEeC---CCcEEEEcHHHHHHHCCCHHHHcCCCHHHHc
Confidence 356788899999999 9999999999999999999999999888776
No 101
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.17 E-value=5.1e-07 Score=60.23 Aligned_cols=39 Identities=8% Similarity=-0.020 Sum_probs=35.6
Q ss_pred ccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHH
Q 022384 251 KQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTY 292 (298)
Q Consensus 251 ~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~ 292 (298)
.++++++|. +++|+++|++|++++||+.++++|+++..+
T Consensus 2 ~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~ 40 (96)
T 3a0s_A 2 ETAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRRLKDL 40 (96)
T ss_dssp CCEEEEEET---TSBEEEECHHHHHHHCCCHHHHTTSBGGGS
T ss_pred CceEEEEcC---CCCEeehhHHHHHHhCCCHHHhcCCCHHHC
Confidence 468899999 999999999999999999999999987654
No 102
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=98.04 E-value=1.4e-06 Score=59.49 Aligned_cols=37 Identities=14% Similarity=0.387 Sum_probs=33.5
Q ss_pred cceEeeCCCCCCCceeeehhhhhhhccccceeccchh
Q 022384 252 QSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASM 288 (298)
Q Consensus 252 ~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~ 288 (298)
.+++++|...+++.|+++|++|++++||+.+|++|++
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~ 38 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRP 38 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSB
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCC
Confidence 4788999855679999999999999999999999997
No 103
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.24 E-value=8.4e-07 Score=74.19 Aligned_cols=46 Identities=20% Similarity=0.081 Sum_probs=39.5
Q ss_pred hhhcccccceEeeCCCCCCCceeeehhhhhhhc---cccceeccchhhHHHHh
Q 022384 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT---DKGKHSNRASMHSTYLK 294 (298)
Q Consensus 245 ~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~it---Gys~eE~~G~~~~~~~~ 294 (298)
..++++.+||+++|. +|+|+++|+++++++ |++ ++++|++..+++.
T Consensus 174 ~~~~~~~dGIivvD~---~G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~ 222 (305)
T 2ykf_A 174 RSSPRAGDGFIRLDV---DGVVSYASPNALSAYHRMGLT-TELEGVNLIDATR 222 (305)
Confidence 356788999999999 999999999999997 566 8999998877653
No 104
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=97.94 E-value=1.6e-06 Score=60.66 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=41.5
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccc---cceeccchhhHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDK---GKHSNRASMHSTY 292 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGy---s~eE~~G~~~~~~ 292 (298)
+...++.+.++++++|. +++|+++|++|++++|| +.++++|++...+
T Consensus 17 ~~~il~~~~~~i~~~d~---~g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~ 66 (118)
T 2w0n_A 17 RQAMLQSIKEGVVAVDD---RGEVTLINDAAQELLNYRKSQDDEKLSTLSHSW 66 (118)
T ss_dssp HHHHHHCCCCCCEEEBT---TTBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCC
T ss_pred HHHHHhhccccEEEECC---CCcEeehhHHHHHHhCCCccChhhhhccCcccc
Confidence 44567888999999999 99999999999999998 8999999977654
No 105
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=97.91 E-value=3.3e-06 Score=65.22 Aligned_cols=48 Identities=15% Similarity=0.103 Sum_probs=43.9
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+...++.+.++++++|. +++|+++|+++++++||+.++++|+++..++
T Consensus 82 l~~il~~~~~gvi~~D~---~g~I~~~N~aa~~llg~~~~~~~g~~~~~~~ 129 (190)
T 2jhe_A 82 LSALLEALPEPVLSVDM---KSKVDMANPASCQLFGQKLDRLRNHTAAQLI 129 (190)
T ss_dssp HHHHHHHCSSCEEEECT---TCBEEEECHHHHHHHTSCHHHHTTSBGGGTS
T ss_pred HHHHHHhCCCcEEEEcC---CCCEEEEcHHHHHHhCCCHHHhcCccHHHHh
Confidence 55678889999999999 9999999999999999999999999887764
No 106
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=97.89 E-value=5.6e-06 Score=61.49 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=41.3
Q ss_pred hhhhhcccccceEeeC-CCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d-~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+...++.++.++++.| + +++|+++|++|++++||+ +++|+++.+++
T Consensus 19 ~~~~~~~~~~~i~~~d~~---~~~i~~~N~~~~~~~g~~--~~~G~~~~~~~ 65 (158)
T 3k3c_A 19 VRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVY 65 (158)
T ss_dssp HHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCTTC--CSTTSBHHHHS
T ss_pred HHHHHhcCCceEEEEECC---CcEeHHHHHHHHHHcCCc--hhcCCcHHHhC
Confidence 5567788899999999 8 999999999999999999 99999988765
No 107
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=97.88 E-value=3.9e-06 Score=58.98 Aligned_cols=51 Identities=27% Similarity=0.421 Sum_probs=42.4
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+...++.+.++++++|...+++.|+++|++|++++||+.++++|++...++
T Consensus 8 ~~~~~~~~~~~i~~~d~~d~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~ 58 (130)
T 2z6d_A 8 LKTALSTLQQTFVVSDATQPHCPIVYASSGFFTMTGYSSKEIVGRNCRFLQ 58 (130)
T ss_dssp HHHHHHHTTCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGC
T ss_pred HHHHHHhcccceeeeeccCCCCcEEEecHHHHHHhCcCHHHHcCCChhhcc
Confidence 455778889999999921129999999999999999999999999876553
No 108
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=97.86 E-value=5.6e-06 Score=57.71 Aligned_cols=45 Identities=9% Similarity=-0.051 Sum_probs=41.0
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHS 290 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~ 290 (298)
+...++.+..+++++|. ++.|+++|++|++++||+.++++|++..
T Consensus 9 ~~~~~~~~~~~i~~~d~---~~~i~~~N~~~~~~~g~~~~~~~g~~~~ 53 (124)
T 3lyx_A 9 RAKAFDYVFDAIVVTDL---QGFIIDWNKGSETLYGYSKEQAIGQPVN 53 (124)
T ss_dssp HHHGGGTCSSEEEEEET---TCBEEEECHHHHHHHCCCHHHHTTSBGG
T ss_pred HHHHHhhcCceEEEECC---CCcEeehhhHHHHHhCCCHHHHcCCCHH
Confidence 44567888999999999 9999999999999999999999999876
No 109
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=97.81 E-value=8.5e-06 Score=62.61 Aligned_cols=46 Identities=13% Similarity=0.109 Sum_probs=41.5
Q ss_pred hhhhhcccccceEeeC-CCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d-~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+...++.+..++++.| . +++|+++|++|++++||+ +++|+++.+++
T Consensus 39 l~~l~~~~~~~i~~~d~~---~g~i~~~N~a~~~l~G~~--~~~G~~~~~~~ 85 (185)
T 3kx0_X 39 VRRIFEHIPAILVGLEGP---DHRFVAVNAAYRGFSPLL--DTVGQPAREVY 85 (185)
T ss_dssp HHHHHHHCSSEEEEEETT---TTEEEEECHHHHHHCCCC--SCTTSBHHHHC
T ss_pred HHHHHhcCCceEEEEECC---CcEEEEEcHHHHHHcCCc--cccCCcHHHHC
Confidence 5567788899999999 8 999999999999999999 99999988765
No 110
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=97.81 E-value=3.5e-06 Score=71.58 Aligned_cols=47 Identities=9% Similarity=-0.035 Sum_probs=42.2
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTY 292 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~ 292 (298)
+...++.+.++++++|. +++|+++|++|++++||+++|++|+++.++
T Consensus 10 ~~~i~~~~~~~i~~~d~---~g~i~~~N~a~~~l~G~~~~e~~G~~~~~~ 56 (349)
T 3a0r_A 10 SESILESLETAIITLSK---DGRITEWNKKAEQLFGLKKENVLGRRLKDL 56 (349)
T ss_dssp CCSSGGGSSSEEEEEES---SSBCSCBCHHHHHHHSCCSTTTTTCBSTTS
T ss_pred HHHHHhhhcCeEEEECC---CCCEEeeHHHHHHHhCCCHHHHcCcCHHHC
Confidence 34567889999999999 999999999999999999999999987654
No 111
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=97.80 E-value=1.1e-05 Score=60.14 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=43.0
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+...++.+.++++++|. ++.|+++|++|++++||+.++++|++...++
T Consensus 42 ~~~~l~~~~~~i~~~d~---~g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~ 89 (167)
T 1v9y_A 42 FFPALEQNMMGAVLINE---NDEVMFFNPAAEKLWGYKREEVIGNNIDMLI 89 (167)
T ss_dssp HHHHHHTCSSEEEEECT---TSBEEEECHHHHHHHSCCGGGTTTSBGGGGS
T ss_pred HHHHHHhCCCCEEEECC---CCcEEEECHHHHHHhCCCHHHHcCCChhhcc
Confidence 55677888999999999 9999999999999999999999999877654
No 112
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=97.75 E-value=1.2e-05 Score=57.74 Aligned_cols=51 Identities=37% Similarity=0.638 Sum_probs=42.8
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+...++.+..+++++|...+++.|+++|++|++++||+.++++|+++..++
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~ 54 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNCRFLQ 54 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGC
T ss_pred HHHHHhcCCCcEEEEcCCCCCceEEEEcHHHHHHHCcCHHHHcCCCHHHhc
Confidence 345678888999999874447899999999999999999999999876553
No 113
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=97.74 E-value=3.3e-05 Score=54.85 Aligned_cols=98 Identities=11% Similarity=0.127 Sum_probs=75.1
Q ss_pred EEEEEeCCCCCCcEEEcchHHHHHhCCCc--cccCCCCCCCCcCCCCCH--HHHHHHHHHHHhCCCEEEEEEEEccCCCE
Q 022384 30 SFTITDPSISGHPIVFASRGFLKMSGFSR--AEIIGRNGRMFQGPRTNR--RTIMEIREAIREERPIEVNLLNYKKDGTP 105 (298)
Q Consensus 30 ~i~~~d~~~~~g~i~~~N~~~~~~~g~~~--~e~ig~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~~~~~~dg~~ 105 (298)
-+.-.+.+ |+++++..+..+ .++.. +|++|+.+.+++++.+.. .......+++..|.....-++++.++|..
T Consensus 9 F~sRh~~d---GKf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~ 84 (132)
T 1oj5_A 9 FMTKQDTT---GKIISIDTSSLR-AAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTM 84 (132)
T ss_dssp EEEEECTT---CCEEEEECHHHH-TTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCE
T ss_pred eEEeecCC---CcEEEEeccccc-ccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcE
Confidence 34456777 999999998874 77777 899999988899988854 77777888888777777779999999999
Q ss_pred EEEEEEEEEeecCCCCcEEEEEEEEe
Q 022384 106 FWMLFKMSLVFGKEDGRATHFVAVQV 131 (298)
Q Consensus 106 ~~~~~~~~p~~~~~~g~~~~~~~~~~ 131 (298)
+|+......+.+|-..++..++++-.
T Consensus 85 V~~qT~sk~f~np~t~e~e~Ivs~n~ 110 (132)
T 1oj5_A 85 LSAHTRCKLCYPQSPDMQPFIMGIHI 110 (132)
T ss_dssp EEEEEEEEEECC----CCCEEEEEEE
T ss_pred EEEEEEEEEecCCCCCCCCEEEEEEE
Confidence 99998888777633355556666543
No 114
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=97.72 E-value=8.4e-06 Score=60.68 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=41.4
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhh---hhhhccccceeccchhhHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDA---FLKLTDKGKHSNRASMHSTY 292 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a---f~~itGys~eE~~G~~~~~~ 292 (298)
+...++.+.++|+++|. +++|+|+|++ +++++| ..++++||++.++
T Consensus 21 l~~IL~~~~~gI~~vD~---~g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~ 69 (151)
T 2qkp_A 21 ANLILNHLPLEITFVNK---DDIFQYYNDSVPAAEMVFK-RTPSQVGRNVELC 69 (151)
T ss_dssp HHHHHHHSSSEEEEEET---TSBEEEECCCSCGGGCSSC-CCGGGTTSBGGGS
T ss_pred HHHHHHhCCCceEEEcC---CCeEEEEeCCCchhhhhcC-CCHHHcCCCHHHh
Confidence 56678899999999999 9999999999 999999 6688999987665
No 115
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=97.70 E-value=7.3e-06 Score=60.95 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=42.9
Q ss_pred hhhhhcccccceEeeCCCCCCC---ceeeehhhhhhhccccceeccchhhHHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDM---PMVYASDAFLKLTDKGKHSNRASMHSTYL 293 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~---~i~~~N~af~~itGys~eE~~G~~~~~~~ 293 (298)
+...++.+..+++++|. ++ .|+++|++|++++||+.++++|+.+..++
T Consensus 27 ~~~i~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~ 77 (162)
T 3sw1_A 27 LQSMVDASNDGIVVAEK---EGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQ 77 (162)
T ss_dssp HHHHHHTCSSEEEEEEE---ETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGT
T ss_pred HHHHHhhccCcEEEEeC---CCCccEEEEECHHHHHHHCCCHHHHcCCCcceec
Confidence 55677888999999999 88 99999999999999999999999876654
No 116
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=97.66 E-value=1.4e-05 Score=56.86 Aligned_cols=45 Identities=11% Similarity=0.284 Sum_probs=38.6
Q ss_pred hhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchh
Q 022384 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASM 288 (298)
Q Consensus 244 ~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~ 288 (298)
...++.+..+++++|...+++.|+++|++|++++||+.++++|++
T Consensus 22 ~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~~~~g~~ 66 (138)
T 2l0w_A 22 IRKFEGQSRKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRP 66 (138)
T ss_dssp HHHHTTTTSEEEEEESSSTTCBEEEECSHHHHHHSCCHHHHTTSB
T ss_pred HHHHhcCCCCEEEEecCCCCCEEEEeCHHHHHHhCCCHHHHcCCC
Confidence 344566888999999744478999999999999999999999997
No 117
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=97.53 E-value=2.6e-05 Score=54.37 Aligned_cols=43 Identities=7% Similarity=0.010 Sum_probs=39.2
Q ss_pred hhhhhcccccceEeeCCCCCC-Cceeeehhhhhhhccccceeccchh
Q 022384 243 LYISLGRIKQSFVLIDPHLPD-MPMVYASDAFLKLTDKGKHSNRASM 288 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~-~~i~~~N~af~~itGys~eE~~G~~ 288 (298)
+...++.+..++++.|. + +.|+++|++|++++||+.++++|++
T Consensus 13 ~~~~~~~~~~~i~~~d~---~~~~i~~~n~~~~~~~g~~~~~~~~~~ 56 (125)
T 3eeh_A 13 VRELTEATNDILWEFTA---DLSEVLVINSAYEDIWGRSVAKLRENP 56 (125)
T ss_dssp HHHHHSCCCCEEEEEET---TSSCEEEECTHHHHHHSSCHHHHHHCG
T ss_pred HHHHHhcCCceEEEEEc---CCCcEEEecHHHHHHHCCCHHHHccCc
Confidence 45577888999999999 8 9999999999999999999999976
No 118
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=97.49 E-value=5.7e-05 Score=52.87 Aligned_cols=41 Identities=10% Similarity=-0.064 Sum_probs=32.0
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccc
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRA 286 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G 286 (298)
+...++....++++.|. ++.++++|++|++++||+.++++|
T Consensus 9 l~~~~~~~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~ 49 (125)
T 3nja_A 9 LHTAESDAGIGSWVLHM---ESGRLEWSQAVHDIFGTDSATFDA 49 (125)
T ss_dssp --------CCEEEEEET---TTTEEEECHHHHHHHTCCTTTCCC
T ss_pred HHHHHHhCCeeEEEEEc---CCCcEEECHHHHHHhCCCcccccc
Confidence 44567778899999999 999999999999999999999999
No 119
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=97.39 E-value=5.5e-05 Score=52.56 Aligned_cols=44 Identities=9% Similarity=-0.077 Sum_probs=38.6
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhh
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMH 289 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~ 289 (298)
+...++.++.++++.|. ++.++++|+++++++||+.+|++|+..
T Consensus 6 ~~~l~~~~~~~i~~~d~---~~~~~~~n~~~~~~~G~~~~~~~~~~~ 49 (118)
T 3icy_A 6 LQALVDNIPAAIYHLDV---SGQATIRFRPPAFLKTLVSEHAGTTRL 49 (118)
T ss_dssp HHHHHTTCCCCCEEECT---TSCEEECCCCCGGGGGGEEEETTEEEE
T ss_pred HHHHHhcCCceEEEEEc---CCCceEEechhHhhcCCCHHHccCChh
Confidence 44567788889999999 999999999999999999999988754
No 120
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=97.13 E-value=0.00016 Score=66.64 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=37.0
Q ss_pred hhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhH
Q 022384 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHS 290 (298)
Q Consensus 246 ~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~ 290 (298)
.++...++++++|. +++|+|+|++|++++||+.+|++|+...
T Consensus 523 lle~a~~~i~~~D~---~grI~~~N~a~~~l~G~s~~e~~g~~~l 564 (635)
T 4eho_A 523 QVHASMQPVLITDA---EGRILLMNDSFRDMLPAGSPSAVHLDDL 564 (635)
T ss_dssp HHHHCSSCCEEEET---TCCEEEECHHHHTTSCSSCCCCCSSGGG
T ss_pred HHHhCCCcEEEECC---CCeEeeHHHHHHHHHCcChHHHcCcchh
Confidence 34556688999999 9999999999999999999999998643
No 121
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=97.10 E-value=0.00031 Score=48.73 Aligned_cols=34 Identities=18% Similarity=0.027 Sum_probs=29.4
Q ss_pred ccceEeeCCCCCCCceeeehhhhhhhccccceeccc
Q 022384 251 KQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRA 286 (298)
Q Consensus 251 ~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G 286 (298)
..+++..|. +++.++|+|++|++++||+++|++|
T Consensus 3 ~~giw~~d~--~~~~~~~~n~~~~~l~G~~~~e~~~ 36 (115)
T 3h9w_A 3 KAIPWKINW--QTMAFEYIGPQIEALLGWPQGSWKS 36 (115)
T ss_dssp CCEEEEEET--TTTEEEEECTHHHHHHCSCGGGCCB
T ss_pred ceEEEEEEc--CCCcEEEEChhHHHHhCCChHHccC
Confidence 456777784 3788999999999999999999999
No 122
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=96.98 E-value=0.00015 Score=62.24 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=41.6
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHH
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTY 292 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~ 292 (298)
+...++.+.+||+++|. +++|+|+|++ ++++ |+.++++|+++.++
T Consensus 241 l~~IL~~l~dgIivvD~---~g~I~~~N~a-e~i~-~~~~e~iGr~v~~~ 285 (369)
T 3cax_A 241 LKAIFEALPVDVTFIDK---DDRVRFFSPG-ERIF-TRTPSVLGRPVQLC 285 (369)
T ss_dssp HHHHHHHSSSEEEEECT---TSBEEEECCS-SCSS-CCCGGGTTCBTTTS
T ss_pred HHHHHHhCCCcEEEECC---CCcEEEEcCH-HHcc-CChHHHcCCcHHHH
Confidence 66788999999999999 9999999999 9999 99999999988665
No 123
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=96.59 E-value=0.0013 Score=47.69 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=37.1
Q ss_pred hhhhhcccccceEeeCCCCCCCceeeehhhhhhhccccceeccch
Q 022384 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRAS 287 (298)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~ 287 (298)
+..+++....+++..|+ ++.++++|++|.+++||+.+++.|.
T Consensus 11 l~~~~~~~~~g~w~~d~---~~~~~~~s~~~~~~~G~~~~~~~~~ 52 (142)
T 3mr0_A 11 FQLAVSGASAGLWDWNP---KTGAMYLSPHFKKIMGYEDHELPDE 52 (142)
T ss_dssp HHHHHHHTTCEEEEECT---TTCCEEECHHHHHHTTCCGGGSCSE
T ss_pred HHHHHHhCCcEEEEEEc---CCCeEEECHHHHHHhCCCccccCCC
Confidence 55567788889999999 8999999999999999999998774
No 124
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=91.09 E-value=0.097 Score=43.88 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=29.5
Q ss_pred CCceeeehhhhhhhccccceeccchhhHHHHh
Q 022384 263 DMPMVYASDAFLKLTDKGKHSNRASMHSTYLK 294 (298)
Q Consensus 263 ~~~i~~~N~af~~itGys~eE~~G~~~~~~~~ 294 (298)
+++|+++|..+.+++|+++++++|++..+++.
T Consensus 52 ~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~ 83 (337)
T 2ool_A 52 DLRIASVSANVEDLLRQPPASLLNVPIAHYLT 83 (337)
T ss_dssp TCBEEEEETTHHHHHSSCGGGGTTCBGGGGBC
T ss_pred CCEEEEEehhHHHHHCcCHHHHcCCCHHHHcC
Confidence 68999999999999999999999999888764
No 125
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=89.65 E-value=0.4 Score=40.14 Aligned_cols=40 Identities=8% Similarity=-0.007 Sum_probs=33.2
Q ss_pred EEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCC
Q 022384 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPR 73 (298)
Q Consensus 32 ~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~ 73 (298)
++++.+ +++|+.+|+.+.+++|+++++++|++...++++.
T Consensus 46 l~~~~~--~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~ 85 (337)
T 2ool_A 46 FVVSET--DLRIASVSANVEDLLRQPPASLLNVPIAHYLTAA 85 (337)
T ss_dssp EEECTT--TCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHH
T ss_pred EEEECC--CCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHH
Confidence 445542 4899999999999999999999999988887653
No 126
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=89.56 E-value=0.15 Score=36.19 Aligned_cols=34 Identities=6% Similarity=0.020 Sum_probs=29.3
Q ss_pred CCceeeehhhhhhhccccc--eeccchhhHHHHhhhc
Q 022384 263 DMPMVYASDAFLKLTDKGK--HSNRASMHSTYLKLQE 297 (298)
Q Consensus 263 ~~~i~~~N~af~~itGys~--eE~~G~~~~~~~~~~~ 297 (298)
+|+|++|.....+ .+|.. +|++|+++++|.-.+|
T Consensus 16 dGKf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~H~~D 51 (132)
T 1oj5_A 16 TGKIISIDTSSLR-AAGRTGWEDLVRKCIYAFFQPQG 51 (132)
T ss_dssp TCCEEEEECHHHH-TTCCSCHHHHHHHHHHHHTSCBT
T ss_pred CCcEEEEeccccc-ccccccHHHHHHHHHHHHhCccc
Confidence 9999999998774 77787 9999999999986554
No 127
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=83.29 E-value=4.6 Score=26.91 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=31.8
Q ss_pred HHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCc
Q 022384 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSR 58 (298)
Q Consensus 19 ~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~ 58 (298)
-.+.+..++|..+.+.+.. ..++|+|.+|.+++-...
T Consensus 21 ~iq~iY~nSPVpVCVRNq~---RkilYaN~aF~elF~Ked 57 (127)
T 4ew7_A 21 SIQDIYKNSPVPVCVRNQS---RKIIYANGAFIELFSKED 57 (127)
T ss_dssp HHHHHHTTCSSCEEEECTT---SCEEEECHHHHHHTTSCC
T ss_pred hHHhhhcCCCccEEEeccc---ceEEEecchHHHHhhccc
Confidence 4567899999999999999 999999999999965443
No 128
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=68.80 E-value=35 Score=25.70 Aligned_cols=96 Identities=8% Similarity=0.076 Sum_probs=55.4
Q ss_pred HHHHHHHHhhCCC--EEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEE
Q 022384 17 TLWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (298)
Q Consensus 17 ~~~l~~~~~~~~~--~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (298)
...+..+....+. .+++.|.+ |.++..+.. ...+. ...+.+. +..++..+..+-.
T Consensus 57 ~~~L~~~~~~~~~~~~i~i~d~~---G~~~~~~~~----------~~~~~------~~~~r~~----f~~a~~~~~~~is 113 (217)
T 4dah_A 57 QSILEKTFDSEPRFSGLYFLNAK---GDVTASTTE----------LKTKV------NLADRSF----FIKAKETKKTVIS 113 (217)
T ss_dssp HHHHHHHHTTCTTEEEEEEEETT---CBEEEESSC----------CSSCC------BCTTSHH----HHHHHHHCSCEEC
T ss_pred HHHHHHHHhcCCcccEEEEECCC---CcEEEecCC----------CCCCC------CcchhHH----HHHHHhcCCcEEe
Confidence 3455556665554 68889999 998875430 00111 1122222 3344555655433
Q ss_pred EEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhh
Q 022384 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (298)
Q Consensus 95 e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~ 138 (298)
+...-...|. ++.....|+.+ .+|.+.|++++..++....+
T Consensus 114 ~~~~~~~~g~--~~i~ia~pi~~-~~g~~~Gvl~~~i~l~~l~~ 154 (217)
T 4dah_A 114 DSYSSRITGQ--PIFTICVPVLD-SKRNVTDYLVAAIQIDYLKN 154 (217)
T ss_dssp CCEECTTTCS--EEEEEEEEEEC-TTSCEEEEEEEEEEHHHHHH
T ss_pred ceEEcCCCCC--EEEEEEEEEEC-CCCCEEEEEEEEEcHHHHHH
Confidence 3333334565 45567789987 68999999888777665433
No 129
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=66.84 E-value=20 Score=29.70 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=38.6
Q ss_pred EEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHh
Q 022384 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88 (298)
Q Consensus 30 ~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~ 88 (298)
.+++++.+ ++|+.++..+..++|.++++++|++...++++ .....+...+..
T Consensus 31 ~Ll~~~~~---~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~----~~~~~l~~~l~~ 82 (327)
T 4e04_A 31 LLLALAAD---MTIVAGSDNLPELTGLAIGALIGRSAADVFDS----ETHNRLTIALAE 82 (327)
T ss_dssp EEEEECTT---CBEEEEETTHHHHHSCCHHHHTTCBHHHHBCH----HHHHHHHHHHHS
T ss_pred EEEEEcCC---CeEEEEcccHHHHhCCChHhhcCCCHHHHcCH----HHHHHHHHHhhc
Confidence 34566755 99999999999999999999999997777653 333444455443
No 130
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=64.37 E-value=6.6 Score=26.15 Aligned_cols=28 Identities=21% Similarity=0.371 Sum_probs=21.0
Q ss_pred cccceEeeCCCCCCCceeeehhhhhhhcccc
Q 022384 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTDKG 280 (298)
Q Consensus 250 ~~~~i~i~d~~~~~~~i~~~N~af~~itGys 280 (298)
++-.+.+... +..|+|+|-+|.+++--+
T Consensus 29 SPVpVCVRNq---~RkilYaN~aF~elF~Ke 56 (127)
T 4ew7_A 29 SPVPVCVRNQ---SRKIIYANGAFIELFSKE 56 (127)
T ss_dssp CSSCEEEECT---TSCEEEECHHHHHHTTSC
T ss_pred CCccEEEecc---cceEEEecchHHHHhhcc
Confidence 3444567776 889999999999995433
No 131
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=63.89 E-value=3.3 Score=34.58 Aligned_cols=33 Identities=9% Similarity=-0.043 Sum_probs=30.2
Q ss_pred CCCceeeehhhhhhhccccceeccchhhHHHHh
Q 022384 262 PDMPMVYASDAFLKLTDKGKHSNRASMHSTYLK 294 (298)
Q Consensus 262 ~~~~i~~~N~af~~itGys~eE~~G~~~~~~~~ 294 (298)
++.+|+++......++|.+.++++|++..+++.
T Consensus 61 ~~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~ 93 (343)
T 3s7o_A 61 HSGEVLQMSLNAATFLGQEPTVLRGQTLAALLP 93 (343)
T ss_dssp TTCBEEEEETTHHHHHSSCHHHHTTCBHHHHST
T ss_pred CCCEEEEEcccHHHHhCcChHHHcCCCHHHHHh
Confidence 378999999999999999999999999988874
No 132
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=57.93 E-value=4.8 Score=33.42 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=32.7
Q ss_pred eEeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHHh
Q 022384 254 FVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYLK 294 (298)
Q Consensus 254 i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~~ 294 (298)
++..|+ +.+|+.+......++|-+.++++|++..+++.
T Consensus 32 Ll~~~~---~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~ 69 (327)
T 4e04_A 32 LLALAA---DMTIVAGSDNLPELTGLAIGALIGRSAADVFD 69 (327)
T ss_dssp EEEECT---TCBEEEEETTHHHHHSCCHHHHTTCBHHHHBC
T ss_pred EEEEcC---CCeEEEEcccHHHHhCCChHhhcCCCHHHHcC
Confidence 344555 89999999999999999999999999988764
No 133
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=50.19 E-value=7 Score=32.62 Aligned_cols=41 Identities=10% Similarity=0.042 Sum_probs=33.9
Q ss_pred EEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCC
Q 022384 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (298)
Q Consensus 30 ~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~ 72 (298)
.+++++.+ +++|+.++..+..++|.++++++|++...++++
T Consensus 54 ~LL~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 54 ALLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp EEEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred EEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 34566652 389999999999999999999999998777765
No 134
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=46.01 E-value=8.5 Score=34.20 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=30.2
Q ss_pred CCCceeeehhhhhhhccccceeccchhhHHHHh
Q 022384 262 PDMPMVYASDAFLKLTDKGKHSNRASMHSTYLK 294 (298)
Q Consensus 262 ~~~~i~~~N~af~~itGys~eE~~G~~~~~~~~ 294 (298)
++..|+++......++|.+.++++|++..+++.
T Consensus 38 ~~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~ 70 (520)
T 3zq5_A 38 PDLTISQISANCTGILGRSPEDLLGRTLGEVFD 70 (520)
T ss_dssp TTTEEEEEETTHHHHHSCCHHHHTTSBHHHHCE
T ss_pred CCCEEEEEcccHHHHhCcChHHHcCCCHHHHcC
Confidence 378999999999999999999999999998874
No 135
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=36.05 E-value=1.3e+02 Score=24.00 Aligned_cols=90 Identities=13% Similarity=0.202 Sum_probs=55.2
Q ss_pred HhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEEEEccCC
Q 022384 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (298)
Q Consensus 24 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg 103 (298)
..++|+--++.+.+ |.+ |-++-...+|.+..++ ..+.+.+..+..|+... ....+
T Consensus 77 p~~~pDfRFI~~~~---~~~--WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~~--~~s~~ 131 (270)
T 3c38_A 77 LSNAPDLRFISSHD---NIL--WDDGNASFYGIAQQEL------------------NKLIRRVAISGNWHLVQ--TPSEG 131 (270)
T ss_dssp GGGCCSEEEEEETT---EEE--EECSCGGGGTCCHHHH------------------HHHHHHSCSSSSCEEEE--ECCSS
T ss_pred ccCCCcEEEEEeCC---ceE--EECCCCceeCCCHHHH------------------HHHHhhcccCCceEEEE--eccCC
Confidence 34678888888876 543 3333334455443322 33444445556676432 34567
Q ss_pred CEEEEEEEEEEeecCCCCcEEEEEEEEecCchhhh
Q 022384 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (298)
Q Consensus 104 ~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~k~ 138 (298)
..+++.+...|+.++..|++.|++.++......--
T Consensus 132 g~~~lLvRr~pIid~~TGEVlG~Ly~gvVLnnNfs 166 (270)
T 3c38_A 132 KSVHILMRRSSLIEAGTGQVVGYLYVGIVLNDNFA 166 (270)
T ss_dssp SCEEEEEEEEEECCCC-CCCCEEEEEEEECTTCHH
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEecCcHH
Confidence 77888899999998567999998777766554433
No 136
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=34.77 E-value=1.5e+02 Score=22.71 Aligned_cols=87 Identities=13% Similarity=0.035 Sum_probs=54.7
Q ss_pred HhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHHhCCCEEEEEEEEccCC
Q 022384 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (298)
Q Consensus 24 ~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dg 103 (298)
..++|+--++.+.+ +.+ |-++-...+|.+..++ ..+.+.+..+..|+... ....+
T Consensus 58 p~~~pDfRFI~~~~---~~~--WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~~--~~s~~ 112 (221)
T 2hje_A 58 PSHTPEFRFLTDHK---GII--WDDGNAHFYGVNDLIL------------------DSLANRVSFSNNWYYIN--VMTSI 112 (221)
T ss_dssp GGGCCSEEEEECSS---SEE--EECSGGGGGTCCHHHH------------------HHHHHHCCSSSSCEEEE--EEETT
T ss_pred cCCCCcEEEEEeCC---ceE--EECCCccccccCHHHH------------------HHHHhhhcccCceEEEE--eccCC
Confidence 35788888888877 533 3444445566554332 23334444555666432 34466
Q ss_pred CEEEEEEEEEEeecCCCCcEEEEEEEEecCch
Q 022384 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (298)
Q Consensus 104 ~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe 135 (298)
..+++.+...|+.++..|++.|++.+..-...
T Consensus 113 g~~~lLvRR~pIi~~~tGeVlG~Ly~gvVLnn 144 (221)
T 2hje_A 113 GSRHMLVRRVPILDPSTGEVLGFSFNAVVLDN 144 (221)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEECTT
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEecC
Confidence 77888899999998678999998766654443
No 137
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=34.02 E-value=12 Score=29.74 Aligned_cols=30 Identities=7% Similarity=0.026 Sum_probs=25.0
Q ss_pred ceEeeCCCCCCCceeeehhhhhhhccccceec
Q 022384 253 SFVLIDPHLPDMPMVYASDAFLKLTDKGKHSN 284 (298)
Q Consensus 253 ~i~i~d~~~~~~~i~~~N~af~~itGys~eE~ 284 (298)
++.+.|- ..+...+++..|..++||+.+++
T Consensus 45 ~~~l~D~--~~~~~~~~s~~~~~llG~~~~~~ 74 (258)
T 3clo_A 45 CAVISDL--SNRKSYVTVHPWANFLGLTPEEA 74 (258)
T ss_dssp EEEEEET--TTTEEEEEECTTCGGGCCCHHHH
T ss_pred eEEEEEc--CCCeEEEEeCCHHHHhCCCcccc
Confidence 4567775 37789999999999999999877
No 138
>2joi_A Hypothetical protein TA0095; structural genomics, COG4004 orthologous group, structural genomics consortium, SGC, unknown function; NMR {Thermoplasma acidophilum}
Probab=33.79 E-value=13 Score=25.27 Aligned_cols=16 Identities=25% Similarity=0.273 Sum_probs=11.6
Q ss_pred hhhhhhhccccceecc
Q 022384 270 SDAFLKLTDKGKHSNR 285 (298)
Q Consensus 270 N~af~~itGys~eE~~ 285 (298)
|+-.+++||||+.|=+
T Consensus 97 rdFLe~aTGYTAKER~ 112 (118)
T 2joi_A 97 NDFIEKLTGYSAKERK 112 (118)
T ss_dssp HHHHHHHHCCCGGGHH
T ss_pred HHHHHHHhCccHHHHH
Confidence 4444788999998843
No 139
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=32.22 E-value=95 Score=27.43 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=29.7
Q ss_pred EEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCC-CcC
Q 022384 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQG 71 (298)
Q Consensus 31 i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~-l~~ 71 (298)
+++++.+ ++|+.++..+..++|.++ ++|++... +++
T Consensus 29 Ll~l~~~---~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~ 65 (505)
T 3nhq_A 29 LVTLRAD---GMVLAASENIQALLGFVA--SPGSYLTQEQVG 65 (505)
T ss_dssp EEEECTT---SBEEEEETTHHHHHSSCC--CTTCBCCHHHHH
T ss_pred EEEEcCC---CeEEEEcccHHHHhCccc--ccCCchhhhhCC
Confidence 4556666 999999999999999988 89998776 554
No 140
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=31.84 E-value=14 Score=32.91 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=32.8
Q ss_pred EEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCC
Q 022384 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (298)
Q Consensus 30 ~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~ 72 (298)
.+++++.+ +++|+.++..+..++|.++++++|++...++++
T Consensus 31 ~LLal~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 71 (520)
T 3zq5_A 31 LVVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDS 71 (520)
T ss_dssp EEEEEETT--TTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEE
T ss_pred EEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHcCH
Confidence 34566652 389999999999999999999999987666543
No 141
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=26.02 E-value=82 Score=25.52 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=31.2
Q ss_pred HHHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhC
Q 022384 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55 (298)
Q Consensus 17 ~~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g 55 (298)
..-++.+++..+...+++|.. ..++.+|+++..+++
T Consensus 98 ~p~l~~lLd~l~~PA~V~d~~---~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 98 LQYLIDMIRNMNVPAFVTDQY---VNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHTCSSCEEEEETT---CBEEEEEHHHHHHHT
T ss_pred CHHHHHHHHhcCCCeEEECCC---CCHhhcCHHHHHHhC
Confidence 345677888888889999999 999999999999995
No 142
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=23.97 E-value=2.4e+02 Score=21.40 Aligned_cols=94 Identities=12% Similarity=0.128 Sum_probs=51.9
Q ss_pred HHHHHHHHhhCCC--EEEEEeCCCCCCcEEEcchHHHHHhCCCccccCCCCCCCCcCCCCCHHHHHHHHHHHH--hCCCE
Q 022384 17 TLWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR--EERPI 92 (298)
Q Consensus 17 ~~~l~~~~~~~~~--~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ig~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~ 92 (298)
...+..+....|. .+++.|.+ |. +..+.. .. ..+.. ..+.+ .+..++. .+..+
T Consensus 57 ~~~L~~~~~~~~~~~~i~i~d~~---G~-~~~s~~------~~---~~~~~------~~~r~----~f~~a~~~~~~~~~ 113 (254)
T 3lif_A 57 NERLRALADNLPQLSDVAILDAD---GQ-LTYASV------KP---VPALD------NSDRS----YFRYHRANDDHTLL 113 (254)
T ss_dssp HHHHHHHHHHCTTEEEEEEECTT---SB-EEEESS------SS---EECCB------CTTSH----HHHHHHHCCCCCCE
T ss_pred HHHHHHHHhcCCccceEEEECCC---CC-EecCCC------CC---CCCCC------cccHH----HHHHHHhCCCCCeE
Confidence 3456666666665 68899999 98 543221 00 01111 11222 2344444 34444
Q ss_pred EEEEEEEccCCCEEEEEEEEEEeecCCCCcEEEEEEEEecCchh
Q 022384 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (298)
Q Consensus 93 ~~e~~~~~~dg~~~~~~~~~~p~~~~~~g~~~~~~~~~~DITe~ 136 (298)
-.+...-...|. |+.....|+.+ .+|.+.|++++..++...
T Consensus 114 is~p~~~~~~g~--~~i~~~~pi~~-~~g~~~Gvl~~~i~l~~l 154 (254)
T 3lif_A 114 ITGPIQSRTSGV--WVFVVSRRLET-TDGKFFGVVVATIESEYF 154 (254)
T ss_dssp EEEEEECTTTCC--EEEEEEEEEEC-TTCCEEEEEEEEECHHHH
T ss_pred ECCceecCCCCc--EEEEEEeeeeC-CCCCEeEEEEEEECHHHH
Confidence 433333333454 45567789987 689998988887776543
No 143
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=21.57 E-value=60 Score=25.50 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=32.0
Q ss_pred HHHHHHHhhCCCEEEEEeCCCCCCcEEEcchHHHHHhCCCcccc
Q 022384 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEI 61 (298)
Q Consensus 18 ~~l~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~e~ 61 (298)
.............++++|-. .+.+.+++..+..++||+++++
T Consensus 33 ~~~~~~~~~~~~~~~l~D~~--~~~~~~~s~~~~~llG~~~~~~ 74 (258)
T 3clo_A 33 QFVRSLTEVNGGCAVISDLS--NRKSYVTVHPWANFLGLTPEEA 74 (258)
T ss_dssp HHHHHHHHHHSSEEEEEETT--TTEEEEEECTTCGGGCCCHHHH
T ss_pred HHHHHHHHHcCCeEEEEEcC--CCeEEEEeCCHHHHhCCCcccc
Confidence 34444455566778888843 3889999999999999998866
No 144
>2p08_A Signal transduction histidine kinase; PAS-like domain, homologous to domain in soluble guanylyl CY transferase; 2.00A {Nostoc punctiforme} PDB: 2p04_A
Probab=20.95 E-value=55 Score=22.25 Aligned_cols=35 Identities=3% Similarity=0.127 Sum_probs=28.0
Q ss_pred EeeCCCCCCCceeeehhhhhhhccccceeccchhhHHHHhh
Q 022384 255 VLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHSTYLKL 295 (298)
Q Consensus 255 ~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~~~~~ 295 (298)
++-|. +++|+++-+...++.+-. ..|+++.++.++
T Consensus 15 lvfd~---~~~I~q~G~~L~k~~p~~---~~g~~~~d~F~l 49 (115)
T 2p08_A 15 FAFSR---NREIVQTGEVLERISPEP---LVGKLIEQHFQI 49 (115)
T ss_dssp EEECT---TCBEEEECHHHHHHCSSC---CTTSBGGGTEEE
T ss_pred EEECC---CCEEEEeccHHHHhCccc---cCCCChhHeEEE
Confidence 46777 999999999999998643 269888887654
No 145
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=20.13 E-value=55 Score=28.95 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=30.8
Q ss_pred ceEeeCCCCCCCceeeehhhhhhhccccceeccchhhHH-HHh
Q 022384 253 SFVLIDPHLPDMPMVYASDAFLKLTDKGKHSNRASMHST-YLK 294 (298)
Q Consensus 253 ~i~i~d~~~~~~~i~~~N~af~~itGys~eE~~G~~~~~-~~~ 294 (298)
+++..|. +..|+++......++|.+. ++|++..+ ++.
T Consensus 28 ~Ll~l~~---~~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~ 65 (505)
T 3nhq_A 28 ALVTLRA---DGMVLAASENIQALLGFVA--SPGSYLTQEQVG 65 (505)
T ss_dssp EEEEECT---TSBEEEEETTHHHHHSSCC--CTTCBCCHHHHH
T ss_pred EEEEEcC---CCeEEEEcccHHHHhCccc--ccCCchhhhhCC
Confidence 3455666 7899999999999999998 99998887 664
Done!